Citrus Sinensis ID: 035612

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530----
MNGDHEAHPNSGDIKAPLLPSHRQIQRSPSSHFTLKTIFTPNNFYILLGPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTDGDVQ
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccc
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHccHHHHHHHHHHHHHHHcccHHcHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHcccccccHHHHHHHHHHHEEccccccccccccccHHHHcccccEEEEEEHHHHHHHHHHcHcHHHHHHHHHHcHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHEEHHHHHHHHHHHHcccccccccEEEEEcccEEHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccc
mngdheahpnsgdikapllpshrqiqrspsshftlktiftpnnfyILLGPLLCAVICVCVkldgqatsRNMLGVLAWVFAWWLteavpmpitsmaplflfplfgissadtvAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILfcgepmnppllllgiCGTTAFVSMWMHNVAAAVIMMPVATgilqnlpevplqstlVRKYCKAVVLGVIYSAAvggmstltgTGVNLILVGMWKtyfpeanpisfstwfcFGFPLALVIFVALWAILCLFYcsrgsgpalseYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRsitddipgwgalfndragdgtasvscdgnivvhnseheakgeklmdwnkckklpwnIILLLGAGfaiadgvrtsglADDLSKALDFleaapylaiAPIVCLISAIITeftsnnatttLVLPLLIQIAKTMHvhplllmvpgaigaqfsfllptgtpsnivgfttGHIEIQDMIKTGLPLKIAGIAAMAFLMPtlgayvfgtdgdvq
mngdheahpnsgdikapllPSHRQIQRSPSSHFTLKTIFTPNNFYILLGPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSaavggmstlTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNseheakgeklMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTDGDVQ
MNGDHEAHPNSGDIKAPLLPSHRQIQRSPSSHFTLKTIFTPNNFYILLGPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTDGDVQ
*******************************HFTLKTIFTPNNFYILLGPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGT*****
**************************************FTPNNFYILLGPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATG*****************YCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSG*************RELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTDGD**
**********SGDIKAPLLPSHRQIQRSPSSHFTLKTIFTPNNFYILLGPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTDGDVQ
****************PLLPSHRQIQRSPSSHFTLKTIFTPNNFYILLGPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTDG***
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiii
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
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MNGDHEAHPNSGDIKAPLLPSHRQIQRSPSSHFTLKTIFTPNNFYILLGPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTDGDVQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query534 2.2.26 [Sep-21-2011]
Q8LG88540 Tonoplast dicarboxylate t yes no 0.994 0.983 0.734 0.0
Q8WWT9602 Solute carrier family 13 yes no 0.829 0.735 0.331 4e-74
Q91Y63600 Solute carrier family 13 yes no 0.829 0.738 0.319 5e-73
Q9Z0Z5600 Solute carrier family 13 yes no 0.829 0.738 0.321 1e-72
Q86YT5568 Solute carrier family 13 no no 0.833 0.783 0.352 8e-69
Q28615593 Solute carrier family 13 yes no 0.829 0.747 0.334 1e-68
Q49YW0519 Sodium-dependent dicarbox yes no 0.790 0.813 0.352 3e-68
Q9ES88586 Solute carrier family 13 no no 0.827 0.754 0.344 8e-68
Q13183592 Solute carrier family 13 no no 0.825 0.744 0.337 4e-66
Q2YU56520 Sodium-dependent dicarbox yes no 0.786 0.807 0.348 1e-61
>sp|Q8LG88|TDT_ARATH Tonoplast dicarboxylate transporter OS=Arabidopsis thaliana GN=TDT PE=2 SV=2 Back     alignment and function desciption
 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/542 (73%), Positives = 448/542 (82%), Gaps = 11/542 (2%)

Query: 1   MNGDHEAHPNSGDIKAPLLP---SHRQIQRSPSSHFTLKTIFTPNNFYILLGPLLCAVIC 57
           MNG       S D+K+PLLP   +    +R       L+TIFTP N YI LGPLLCAV+C
Sbjct: 1   MNGGDVTVAGSDDLKSPLLPVVHNDEPFERQTVGQ-QLRTIFTPKNCYIALGPLLCAVVC 59

Query: 58  VCVKLDGQATS--RNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSY 115
           +CV L G  T+  RNMLGVL W+FAWWLTEAVPMPITSM PLFLFPLFGIS+AD VA+SY
Sbjct: 60  LCVDLGGDETTTARNMLGVLVWMFAWWLTEAVPMPITSMTPLFLFPLFGISAADDVANSY 119

Query: 116 MDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM 175
           MDDVI+LVLGSFILALAVEHYNIH+RLALNIT++FC EP+N PLLLLGIC TTAFVSMWM
Sbjct: 120 MDDVISLVLGSFILALAVEHYNIHRRLALNITLVFCVEPLNAPLLLLGICATTAFVSMWM 179

Query: 176 HNVAAAVIMMPVATGILQNLPEVPLQSTLVR----KYCKAVVLGVIYSAAVGGMSTLTGT 231
           HNVAAAV+MMPVATGILQ LP     + +V     K+ +AVVLGVIYSAAVGGMSTLTGT
Sbjct: 180 HNVAAAVMMMPVATGILQRLPSSSSTTEVVHPAVGKFSRAVVLGVIYSAAVGGMSTLTGT 239

Query: 232 GVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEY 291
           GVNLILVGMWK+YFPEA+PISFS WF FGFPLAL IFV LW +LC+ YC +G+G ALS Y
Sbjct: 240 GVNLILVGMWKSYFPEADPISFSQWFFFGFPLALCIFVVLWCVLCVMYCPKGAGQALSPY 299

Query: 292 LDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTAS 351
           L K++L+RELD+LGPM FAEKMVLAVFG L+ LWMTR+ITDDIPGWG +F  RAGDGT S
Sbjct: 300 LHKSHLRRELDLLGPMNFAEKMVLAVFGGLVVLWMTRNITDDIPGWGRIFAGRAGDGTVS 359

Query: 352 VSCDGNIVVHNSEHEAKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKA 411
           V     + +  S  + KGEKLMDWNKCKKLPWNI+LLLGAGFAIADGVRTSGLA+ LSK 
Sbjct: 360 VMMATLLFIIPSNIK-KGEKLMDWNKCKKLPWNIVLLLGAGFAIADGVRTSGLAEVLSKG 418

Query: 412 LDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAI 471
           L FLE APY AIAP VCLI+A ITEFTSNNATTTL++PLLI+IAK M +HPLLLMVPGAI
Sbjct: 419 LVFLETAPYWAIAPTVCLIAATITEFTSNNATTTLLVPLLIEIAKNMGIHPLLLMVPGAI 478

Query: 472 GAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTDG 531
           GAQF+FLLPTGTPSN+VGFTTGHIEI+DMIKTGLPLKIAG   ++ LMPTLGAYVF + G
Sbjct: 479 GAQFAFLLPTGTPSNVVGFTTGHIEIKDMIKTGLPLKIAGTIFLSILMPTLGAYVFASMG 538

Query: 532 DV 533
            V
Sbjct: 539 GV 540
Putative carrier protein indirectly involved in the uptake of malate and fumarate to the vacuole, probably by regulating the energization across the tonoplast. Uptake of malate to vacuoles is inhibited by citrate and by the uncoupler carbonyl-cyanide m-chlorophenylhydrazone, but seems to be not affected by sodium. Critical for pH homeostasis.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8WWT9|S13A3_HUMAN Solute carrier family 13 member 3 OS=Homo sapiens GN=SLC13A3 PE=1 SV=1 Back     alignment and function description
>sp|Q91Y63|S13A3_MOUSE Solute carrier family 13 member 3 OS=Mus musculus GN=Slc13a3 PE=2 SV=1 Back     alignment and function description
>sp|Q9Z0Z5|S13A3_RAT Solute carrier family 13 member 3 OS=Rattus norvegicus GN=Slc13a3 PE=2 SV=1 Back     alignment and function description
>sp|Q86YT5|S13A5_HUMAN Solute carrier family 13 member 5 OS=Homo sapiens GN=SLC13A5 PE=1 SV=1 Back     alignment and function description
>sp|Q28615|S13A2_RABIT Solute carrier family 13 member 2 OS=Oryctolagus cuniculus GN=SLC13A2 PE=2 SV=1 Back     alignment and function description
>sp|Q49YW0|SDCS_STAS1 Sodium-dependent dicarboxylate transporter SdcS OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sdcS PE=3 SV=1 Back     alignment and function description
>sp|Q9ES88|S13A2_MOUSE Solute carrier family 13 member 2 OS=Mus musculus GN=Slc13a2 PE=2 SV=1 Back     alignment and function description
>sp|Q13183|S13A2_HUMAN Solute carrier family 13 member 2 OS=Homo sapiens GN=SLC13A2 PE=2 SV=1 Back     alignment and function description
>sp|Q2YU56|SDCS_STAAB Sodium-dependent dicarboxylate transporter SdcS OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sdcS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query534
116804319533 vacuolar citrate/H+ symporter [Citrus si 0.998 1.0 0.968 0.0
225469988531 PREDICTED: tonoplast dicarboxylate trans 0.994 1.0 0.771 0.0
255581607535 Tonoplast dicarboxylate transporter, put 0.990 0.988 0.793 0.0
307563626529 malate transporter [Malus x domestica] 0.986 0.996 0.750 0.0
297790903540 ATSDAT [Arabidopsis lyrata subsp. lyrata 0.994 0.983 0.739 0.0
307563628529 malate transporter [Malus x domestica] 0.986 0.996 0.756 0.0
15238130540 tonoplast dicarboxylate transporter [Ara 0.994 0.983 0.734 0.0
21536650540 sodium-dicarboxylate cotransporter-like 0.994 0.983 0.732 0.0
224086413462 sodium-dicarboxylate cotransporter [Popu 0.865 1.0 0.844 0.0
12057074540 SDAT(At) [Arabidopsis thaliana] 0.994 0.983 0.725 0.0
>gi|116804319|gb|ABK27327.1| vacuolar citrate/H+ symporter [Citrus sinensis] Back     alignment and taxonomy information
 Score = 1040 bits (2688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/534 (96%), Positives = 521/534 (97%), Gaps = 1/534 (0%)

Query: 1   MNGDHEAHPNSGDIKAPLLPSHRQIQRSPSSHFTLKTIFTPNNFYILLGPLLCAVICVCV 60
           MNGDHEAHPNSGDIKAPLLPSHRQIQRSPSSHFTLKTIFTPNNFYILLGPLLCAVICVCV
Sbjct: 1   MNGDHEAHPNSGDIKAPLLPSHRQIQRSPSSHFTLKTIFTPNNFYILLGPLLCAVICVCV 60

Query: 61  KLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVI 120
           KLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVI
Sbjct: 61  KLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVI 120

Query: 121 ALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAA 180
           ALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAA
Sbjct: 121 ALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAA 180

Query: 181 AVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGM 240
           AVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGM
Sbjct: 181 AVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGM 240

Query: 241 WKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRE 300
           WKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRE
Sbjct: 241 WKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRE 300

Query: 301 LDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVV 360
           LDMLGPMAFAEKMVLAVFG LIALWMTRSITDDIPGWGALFNDRAGDGTASV     + +
Sbjct: 301 LDMLGPMAFAEKMVLAVFGTLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFI 360

Query: 361 HNSEHEAKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPY 420
             S  + KGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPY
Sbjct: 361 IPSMKQ-KGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPY 419

Query: 421 LAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLP 480
           LAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLP
Sbjct: 420 LAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLP 479

Query: 481 TGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTDGDVQ 534
           TGTPSNI GFTTGHIEIQDMIKTGLPLKIAGIAA+AFLMPTLGAYVFGTDGDVQ
Sbjct: 480 TGTPSNIAGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTDGDVQ 533

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225469988|ref|XP_002277785.1| PREDICTED: tonoplast dicarboxylate transporter-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255581607|ref|XP_002531608.1| Tonoplast dicarboxylate transporter, putative [Ricinus communis] gi|223528775|gb|EEF30783.1| Tonoplast dicarboxylate transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|307563626|gb|ADN52376.1| malate transporter [Malus x domestica] Back     alignment and taxonomy information
>gi|297790903|ref|XP_002863336.1| ATSDAT [Arabidopsis lyrata subsp. lyrata] gi|297309171|gb|EFH39595.1| ATSDAT [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|307563628|gb|ADN52377.1| malate transporter [Malus x domestica] Back     alignment and taxonomy information
>gi|15238130|ref|NP_199567.1| tonoplast dicarboxylate transporter [Arabidopsis thaliana] gi|71153589|sp|Q8LG88.2|TDT_ARATH RecName: Full=Tonoplast dicarboxylate transporter; Short=AttDT; AltName: Full=Sodium-dicarboxylate cotransporter-like; Short=AtSDAT; AltName: Full=Vacuolar malate transporter gi|8051712|dbj|BAA96091.1| sodium sulfate or dicarboxylate transporter [Arabidopsis thaliana] gi|18176009|gb|AAL59967.1| putative sodium-dicarboxylate cotransporter protein [Arabidopsis thaliana] gi|22136994|gb|AAM91726.1| putative sodium-dicarboxylate cotransporter protein [Arabidopsis thaliana] gi|332008149|gb|AED95532.1| tonoplast dicarboxylate transporter [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21536650|gb|AAM60982.1| sodium-dicarboxylate cotransporter-like [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224086413|ref|XP_002307886.1| sodium-dicarboxylate cotransporter [Populus trichocarpa] gi|222853862|gb|EEE91409.1| sodium-dicarboxylate cotransporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|12057074|emb|CAC19843.1| SDAT(At) [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query534
TAIR|locus:2168988540 TDT "tonoplast dicarboxylate t 0.994 0.983 0.736 1.2e-209
UNIPROTKB|I3LKJ1594 SLC13A2 "Uncharacterized prote 0.264 0.237 0.471 8.3e-75
UNIPROTKB|Q86YT5568 SLC13A5 "Solute carrier family 0.297 0.279 0.418 2.6e-74
UNIPROTKB|F1NA00589 SLC13A5 "Uncharacterized prote 0.297 0.269 0.418 4.2e-73
ZFIN|ZDB-GENE-030131-4628582 si:ch211-221p4.4 "si:ch211-221 0.297 0.273 0.425 6.1e-73
ZFIN|ZDB-GENE-031222-3583 slc13a1 "solute carrier family 0.601 0.550 0.340 8.6e-73
UNIPROTKB|E1BYV5588 E1BYV5 "Uncharacterized protei 0.589 0.535 0.333 1.8e-72
ZFIN|ZDB-GENE-040426-2389613 slc13a2 "solute carrier family 0.325 0.283 0.410 4.9e-72
UNIPROTKB|Q3SYV8592 SLC13A2 "Uncharacterized prote 0.264 0.238 0.443 1.2e-71
UNIPROTKB|E2R656591 SLC13A2 "Uncharacterized prote 0.292 0.263 0.420 2.2e-71
TAIR|locus:2168988 TDT "tonoplast dicarboxylate transporter" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2027 (718.6 bits), Expect = 1.2e-209, P = 1.2e-209
 Identities = 399/542 (73%), Positives = 448/542 (82%)

Query:     1 MNGDHEAHPNSGDIKAPLLPS-HRQ--IQRSPSSHFTLKTIFTPNNFYILLGPLLCAVIC 57
             MNG       S D+K+PLLP  H     +R       L+TIFTP N YI LGPLLCAV+C
Sbjct:     1 MNGGDVTVAGSDDLKSPLLPVVHNDEPFERQTVGQ-QLRTIFTPKNCYIALGPLLCAVVC 59

Query:    58 VCVKLDGQ--ATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSY 115
             +CV L G    T+RNMLGVL W+FAWWLTEAVPMPITSM PLFLFPLFGIS+AD VA+SY
Sbjct:    60 LCVDLGGDETTTARNMLGVLVWMFAWWLTEAVPMPITSMTPLFLFPLFGISAADDVANSY 119

Query:   116 MDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM 175
             MDDVI+LVLGSFILALAVEHYNIH+RLALNIT++FC EP+N PLLLLGIC TTAFVSMWM
Sbjct:   120 MDDVISLVLGSFILALAVEHYNIHRRLALNITLVFCVEPLNAPLLLLGICATTAFVSMWM 179

Query:   176 HNVAAAVIMMPVATGILQNLPEVPLQSTLVR----KYCKAVVLGVIYSAAVGGMSTLTGT 231
             HNVAAAV+MMPVATGILQ LP     + +V     K+ +AVVLGVIYSAAVGGMSTLTGT
Sbjct:   180 HNVAAAVMMMPVATGILQRLPSSSSTTEVVHPAVGKFSRAVVLGVIYSAAVGGMSTLTGT 239

Query:   232 GVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEY 291
             GVNLILVGMWK+YFPEA+PISFS WF FGFPLAL IFV LW +LC+ YC +G+G ALS Y
Sbjct:   240 GVNLILVGMWKSYFPEADPISFSQWFFFGFPLALCIFVVLWCVLCVMYCPKGAGQALSPY 299

Query:   292 LDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTAS 351
             L K++L+RELD+LGPM FAEKMVLAVFG L+ LWMTR+ITDDIPGWG +F  RAGDGT S
Sbjct:   300 LHKSHLRRELDLLGPMNFAEKMVLAVFGGLVVLWMTRNITDDIPGWGRIFAGRAGDGTVS 359

Query:   352 VSCDGNIVVHNSEHEAKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKA 411
             V     + +  S  + KGEKLMDWNKCKKLPWNI+LLLGAGFAIADGVRTSGLA+ LSK 
Sbjct:   360 VMMATLLFIIPSNIK-KGEKLMDWNKCKKLPWNIVLLLGAGFAIADGVRTSGLAEVLSKG 418

Query:   412 LDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAI 471
             L FLE APY AIAP VCLI+A ITEFTSNNATTTL++PLLI+IAK M +HPLLLMVPGAI
Sbjct:   419 LVFLETAPYWAIAPTVCLIAATITEFTSNNATTTLLVPLLIEIAKNMGIHPLLLMVPGAI 478

Query:   472 GAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTDG 531
             GAQF+FLLPTGTPSN+VGFTTGHIEI+DMIKTGLPLKIAG   ++ LMPTLGAYVF + G
Sbjct:   479 GAQFAFLLPTGTPSNVVGFTTGHIEIKDMIKTGLPLKIAGTIFLSILMPTLGAYVFASMG 538

Query:   532 DV 533
              V
Sbjct:   539 GV 540
GO:0005215 "transporter activity" evidence=IEA
GO:0006814 "sodium ion transport" evidence=IEA;ISS
GO:0006835 "dicarboxylic acid transport" evidence=ISS
GO:0016020 "membrane" evidence=IEA
GO:0017153 "sodium:dicarboxylate symporter activity" evidence=ISS
GO:0035725 "sodium ion transmembrane transport" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0015140 "malate transmembrane transporter activity" evidence=IMP;IDA
GO:0015743 "malate transport" evidence=TAS
GO:0051453 "regulation of intracellular pH" evidence=TAS
UNIPROTKB|I3LKJ1 SLC13A2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q86YT5 SLC13A5 "Solute carrier family 13 member 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NA00 SLC13A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-4628 si:ch211-221p4.4 "si:ch211-221p4.4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031222-3 slc13a1 "solute carrier family 13 (sodium/sulphate symporters), member 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYV5 E1BYV5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2389 slc13a2 "solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SYV8 SLC13A2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R656 SLC13A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LG88TDT_ARATHNo assigned EC number0.73430.99430.9833yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query534
cd01115382 cd01115, SLC13_permease, Permease SLC13 (solute ca 2e-66
COG0471461 COG0471, CitT, Di- and tricarboxylate transporters 3e-50
TIGR00785444 TIGR00785, dass, anion transporter 3e-46
cd00625396 cd00625, ArsB_NhaD_permease, Anion permease ArsB/N 3e-39
pfam00939471 pfam00939, Na_sulph_symp, Sodium:sulfate symporter 2e-35
COG1055424 COG1055, ArsB, Na+/H+ antiporter NhaD and related 1e-09
cd01116413 cd01116, P_permease, Permease P (pink-eyed dilutio 3e-06
COG0471461 COG0471, CitT, Di- and tricarboxylate transporters 4e-06
cd01117384 cd01117, YbiR_permease, Putative anion permease Yb 3e-04
cd01116 413 cd01116, P_permease, Permease P (pink-eyed dilutio 0.001
COG1055 424 COG1055, ArsB, Na+/H+ antiporter NhaD and related 0.004
>gnl|CDD|238535 cd01115, SLC13_permease, Permease SLC13 (solute carrier 13) Back     alignment and domain information 
 Score =  219 bits (560), Expect = 2e-66
 Identities = 118/453 (26%), Positives = 189/453 (41%), Gaps = 72/453 (15%)

Query: 72  LGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILAL 131
           L +L +    ++TEA+P+ +T++    L  L G+         + D  + L L  FIL  
Sbjct: 1   LAILVFAAVLFVTEALPLDVTALLVPVLLVLLGVVPPKEAFSGFSDPAVILFLAGFILGA 60

Query: 132 AVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGI 191
           A+    + KR+A  +             LLL +   TAF+S +M N A   IM+PVA G+
Sbjct: 61  ALTRTGLAKRIATKLLKRAGKGERR---LLLLLMLVTAFLSAFMSNTATVAIMLPVALGL 117

Query: 192 LQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPI 251
              L   P            +++ + ++A++GGM TL GT  NL+  G  ++   +    
Sbjct: 118 AAKLDISP----------SRLLMPLAFAASIGGMLTLIGTPPNLVASGYLESLGGQ--GF 165

Query: 252 SFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAE 311
           SF  +   G PL ++  + LW I                                     
Sbjct: 166 SFFEFTPIGLPLLIIGLLYLWFI------------------------------------- 188

Query: 312 KMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEK 371
              LAV  + I L         I G   +         +     G IV+        G  
Sbjct: 189 -FRLAVLIITIVLLA---ALAAITGLLPV---------SVAIAIGAIVL------VFGGV 229

Query: 372 LMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKAL-DFLEAAPYLAIAPIVCLI 430
           L+     K + W II L   G  +   + +SG A  +++AL   L   P  AI  ++CL+
Sbjct: 230 LLTKEDYKSIDWGIIFLFAGGIPLGKALESSGAAALIAEALISLLGGLPPFAILLLLCLL 289

Query: 431 SAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGF 490
           + ++T F SN AT  L+ P+ + IA ++ + P  L++  AIGA  +F+LP GTP N +  
Sbjct: 290 TLVLTNFISNTATAVLLAPIALSIALSLGLPPEALLLAVAIGASCAFMLPVGTPPNAIVL 349

Query: 491 TTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLG 523
             G  +  D  K GLPL I  +     ++P + 
Sbjct: 350 GPGGYKFSDFAKVGLPLSILSLVVSVTMIPLIW 382

The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices. Length = 382
>gnl|CDD|223547 COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|233126 TIGR00785, dass, anion transporter Back     alignment and domain information
>gnl|CDD|238344 cd00625, ArsB_NhaD_permease, Anion permease ArsB/NhaD Back     alignment and domain information
>gnl|CDD|216206 pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region Back     alignment and domain information
>gnl|CDD|223983 COG1055, ArsB, Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|238536 cd01116, P_permease, Permease P (pink-eyed dilution) Back     alignment and domain information
>gnl|CDD|223547 COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|238537 cd01117, YbiR_permease, Putative anion permease YbiR Back     alignment and domain information
>gnl|CDD|238536 cd01116, P_permease, Permease P (pink-eyed dilution) Back     alignment and domain information
>gnl|CDD|223983 COG1055, ArsB, Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 534
KOG1281586 consensus Na+/dicarboxylate, Na+/tricarboxylate an 100.0
PF00939471 Na_sulph_symp: Sodium:sulfate symporter transmembr 100.0
TIGR00785444 dass anion transporter. Functionally characterized 100.0
COG0471461 CitT Di- and tricarboxylate transporters [Inorgani 100.0
PRK15445427 arsenical pump membrane protein; Provisional 100.0
cd01115382 SLC13_permease Permease SLC13 (solute carrier 13). 100.0
TIGR00935429 2a45 arsenical pump membrane protein. 100.0
cd01116413 P_permease Permease P (pink-eyed dilution). Mutati 100.0
cd01118416 ArsB_permease Anion permease ArsB. These permeases 100.0
PLN00136482 silicon transporter; Provisional 100.0
cd00625396 ArsB_NhaD_permease Anion permease ArsB/NhaD. These 100.0
cd01117384 YbiR_permease Putative anion permease YbiR. Based 100.0
COG1055424 ArsB Na+/H+ antiporter NhaD and related arsenite p 100.0
PRK09547513 nhaB sodium/proton antiporter; Reviewed 100.0
TIGR00774515 NhaB Na+/H+ antiporter NhaB. These proteins are me 100.0
PLN00137424 NHAD transporter family protein; Provisional 100.0
PF02040423 ArsB: Arsenical pump membrane protein; InterPro: I 100.0
TIGR00775420 NhaD Na+/H+ antiporter, NhaD family. These protein 100.0
KOG2639685 consensus Sodium sulfate symporter and related ars 100.0
TIGR00784431 citMHS citrate transporter, CitMHS family. This fa 100.0
PF03600351 CitMHS: Citrate transporter; InterPro: IPR004680 C 99.97
TIGR00786405 dctM TRAP transporter, DctM subunit. force-depende 99.95
PRK09412433 anaerobic C4-dicarboxylate transporter; Reviewed 99.93
PRK15060425 L-dehydroascorbate transporter large permease subu 99.92
COG1593379 DctQ TRAP-type C4-dicarboxylate transport system, 99.9
PF06808416 DctM: DctM-like transporters; InterPro: IPR010656 99.87
TIGR00770430 Dcu anaerobic c4-dicarboxylate membrane transporte 99.87
PF02447441 GntP_permease: GntP family permease; InterPro: IPR 99.86
PRK10654455 dcuC C4-dicarboxylate transporter DcuC; Provisiona 99.85
TIGR00771388 DcuC c4-dicarboxylate anaerobic carrier family pro 99.84
PRK12489443 anaerobic C4-dicarboxylate transporter; Reviewed 99.83
COG2851433 CitM H+/citrate symporter [Energy production and c 99.82
TIGR02123613 TRAP_fused TRAP transporter, 4TM/12TM fusion prote 99.82
PRK14984438 high-affinity gluconate transporter; Provisional 99.82
PRK10472445 low affinity gluconate transporter; Provisional 99.81
PRK09821454 putative transporter; Provisional 99.81
cd01116413 P_permease Permease P (pink-eyed dilution). Mutati 99.81
PRK10034447 fructuronate transporter; Provisional 99.8
PF03606465 DcuC: C4-dicarboxylate anaerobic carrier; InterPro 99.79
PRK11588506 hypothetical protein; Provisional 99.79
cd01118 416 ArsB_permease Anion permease ArsB. These permeases 99.78
PLN00136482 silicon transporter; Provisional 99.77
cd01115382 SLC13_permease Permease SLC13 (solute carrier 13). 99.76
TIGR00785444 dass anion transporter. Functionally characterized 99.76
TIGR00791440 gntP gluconate transporter. This family includes k 99.76
COG1288481 Predicted membrane protein [Function unknown] 99.75
COG2610442 GntT H+/gluconate symporter and related permeases 99.75
PRK15445 427 arsenical pump membrane protein; Provisional 99.74
TIGR00935429 2a45 arsenical pump membrane protein. 99.69
COG0471461 CitT Di- and tricarboxylate transporters [Inorgani 99.69
PF00939471 Na_sulph_symp: Sodium:sulfate symporter transmembr 99.69
PRK09921445 permease DsdX; Provisional 99.68
cd01117 384 YbiR_permease Putative anion permease YbiR. Based 99.68
TIGR00819513 ydaH p-Aminobenzoyl-glutamate transporter family. 99.66
PRK09804455 putative cryptic C4-dicarboxylate transporter DcuD 99.65
COG4664447 FcbT3 TRAP-type mannitol/chloroaromatic compound t 99.64
cd00625 396 ArsB_NhaD_permease Anion permease ArsB/NhaD. These 99.64
COG1055 424 ArsB Na+/H+ antiporter NhaD and related arsenite p 99.6
PF02040 423 ArsB: Arsenical pump membrane protein; InterPro: I 99.59
PRK11339508 abgT putative aminobenzoyl-glutamate transporter; 99.58
TIGR00529387 AF0261 converved hypothetical integral membrane pr 99.58
PF06450515 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterP 99.56
PRK09547513 nhaB sodium/proton antiporter; Reviewed 99.55
KOG2639685 consensus Sodium sulfate symporter and related ars 99.51
PF03600 351 CitMHS: Citrate transporter; InterPro: IPR004680 C 99.5
PLN00137 424 NHAD transporter family protein; Provisional 99.47
COG2056444 Predicted permease [General function prediction on 99.45
PF03605364 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane tra 99.41
TIGR00775 420 NhaD Na+/H+ antiporter, NhaD family. These protein 99.36
KOG1281586 consensus Na+/dicarboxylate, Na+/tricarboxylate an 99.34
PF03806502 ABG_transport: AbgT putative transporter family; I 99.32
COG3067516 NhaB Na+/H+ antiporter [Inorganic ion transport an 99.29
TIGR00931454 antiport_nhaC Na+/H+ antiporter NhaC. A single mem 99.27
PF07158149 MatC_N: Dicarboxylate carrier protein MatC N-termi 99.27
PF04165385 DUF401: Protein of unknown function (DUF401) ; Int 99.26
TIGR00774 515 NhaB Na+/H+ antiporter NhaB. These proteins are me 99.24
COG3069451 DcuC C4-dicarboxylate transporter [Energy producti 99.22
COG2704436 DcuB Anaerobic C4-dicarboxylate transporter [Gener 99.14
TIGR00784431 citMHS citrate transporter, CitMHS family. This fa 99.09
COG2978516 AbgT Putative p-aminobenzoyl-glutamate transporter 99.03
TIGR00786405 dctM TRAP transporter, DctM subunit. force-depende 98.93
PRK09412 433 anaerobic C4-dicarboxylate transporter; Reviewed 98.92
COG1757485 NhaC Na+/H+ antiporter [Energy production and conv 98.9
PF02652522 Lactate_perm: L-lactate permease; InterPro: IPR003 98.87
PRK12489 443 anaerobic C4-dicarboxylate transporter; Reviewed 98.8
TIGR00770 430 Dcu anaerobic c4-dicarboxylate membrane transporte 98.68
TIGR00366438 conserved hypothetical integral membrane protein. 98.68
PF07158149 MatC_N: Dicarboxylate carrier protein MatC N-termi 98.65
PRK10654455 dcuC C4-dicarboxylate transporter DcuC; Provisiona 98.53
PRK10420551 L-lactate permease; Provisional 98.52
TIGR00795530 lctP L-lactate transport. The only characterized m 98.5
COG1620522 LldP L-lactate permease [Energy production and con 98.46
COG4666642 TRAP-type uncharacterized transport system, fused 98.44
PF02667453 SCFA_trans: Short chain fatty acid transporter; In 98.42
PRK09695560 glycolate transporter; Provisional 98.37
PRK15060425 L-dehydroascorbate transporter large permease subu 98.3
COG1593379 DctQ TRAP-type C4-dicarboxylate transport system, 98.29
PRK11339508 abgT putative aminobenzoyl-glutamate transporter; 98.27
TIGR00819513 ydaH p-Aminobenzoyl-glutamate transporter family. 98.21
TIGR00771388 DcuC c4-dicarboxylate anaerobic carrier family pro 98.17
PRK11588506 hypothetical protein; Provisional 98.06
TIGR02123613 TRAP_fused TRAP transporter, 4TM/12TM fusion prote 98.06
PF03606465 DcuC: C4-dicarboxylate anaerobic carrier; InterPro 98.04
COG1906388 Uncharacterized conserved protein [Function unknow 98.02
PF06808416 DctM: DctM-like transporters; InterPro: IPR010656 98.01
PF07854347 DUF1646: Protein of unknown function (DUF1646); In 98.01
PF03553303 Na_H_antiporter: Na+/H+ antiporter family; InterPr 97.99
PF03553303 Na_H_antiporter: Na+/H+ antiporter family; InterPr 97.86
PF03806502 ABG_transport: AbgT putative transporter family; I 97.81
TIGR00791 440 gntP gluconate transporter. This family includes k 97.73
TIGR00931 454 antiport_nhaC Na+/H+ antiporter NhaC. A single mem 97.69
PRK09804455 putative cryptic C4-dicarboxylate transporter DcuD 97.58
COG1288481 Predicted membrane protein [Function unknown] 97.42
COG2851433 CitM H+/citrate symporter [Energy production and c 97.41
COG2610 442 GntT H+/gluconate symporter and related permeases 97.33
PF03605 364 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane tra 97.29
PRK10034 447 fructuronate transporter; Provisional 97.29
TIGR00529 387 AF0261 converved hypothetical integral membrane pr 97.29
PF02447 441 GntP_permease: GntP family permease; InterPro: IPR 97.17
COG1757485 NhaC Na+/H+ antiporter [Energy production and conv 97.12
PRK09821 454 putative transporter; Provisional 97.01
PRK10472 445 low affinity gluconate transporter; Provisional 96.87
PF07399438 DUF1504: Protein of unknown function (DUF1504); In 96.86
COG2978516 AbgT Putative p-aminobenzoyl-glutamate transporter 96.74
COG2031446 AtoE Short chain fatty acids transporter [Lipid me 96.68
PRK09921 445 permease DsdX; Provisional 96.59
COG4664447 FcbT3 TRAP-type mannitol/chloroaromatic compound t 96.58
PF06166308 DUF979: Protein of unknown function (DUF979); Inte 96.57
PF06149218 DUF969: Protein of unknown function (DUF969); Inte 96.48
COG2056444 Predicted permease [General function prediction on 96.44
PRK14984 438 high-affinity gluconate transporter; Provisional 96.42
TIGR00366438 conserved hypothetical integral membrane protein. 96.41
PF02652522 Lactate_perm: L-lactate permease; InterPro: IPR003 95.37
PF06166308 DUF979: Protein of unknown function (DUF979); Inte 95.17
PF04165385 DUF401: Protein of unknown function (DUF401) ; Int 95.05
PF07399438 DUF1504: Protein of unknown function (DUF1504); In 94.55
PRK10420551 L-lactate permease; Provisional 94.38
PF06450515 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterP 94.31
COG2704 436 DcuB Anaerobic C4-dicarboxylate transporter [Gener 94.27
COG3817313 Predicted membrane protein [Function unknown] 94.15
COG3069 451 DcuC C4-dicarboxylate transporter [Energy producti 94.12
TIGR00795530 lctP L-lactate transport. The only characterized m 93.92
PRK09695560 glycolate transporter; Provisional 93.31
COG1620522 LldP L-lactate permease [Energy production and con 93.2
PF07854347 DUF1646: Protein of unknown function (DUF1646); In 92.57
PF1372688 Na_H_antiport_2: Na+-H+ antiporter family 88.78
COG4756367 Predicted cation transporter [General function pre 87.6
COG3817313 Predicted membrane protein [Function unknown] 87.13
PF02667453 SCFA_trans: Short chain fatty acid transporter; In 86.27
COG3067516 NhaB Na+/H+ antiporter [Inorganic ion transport an 82.25
COG4756367 Predicted cation transporter [General function pre 82.21
COG3819229 Predicted membrane protein [Function unknown] 80.24
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-66  Score=528.35  Aligned_cols=490  Identities=37%  Similarity=0.624  Sum_probs=430.5

Q ss_pred             hhhhhhhH-HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhccCChHHHHhhh
Q 035612           37 TIFTPNNF-YILLGPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSY  115 (534)
Q Consensus        37 ~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v~~~~  115 (534)
                      .++.+|+. .+...|++..+.-.-...+.+ ++.+|++....+..+|++|++|.+++++++.+++++.|+++.+|+...|
T Consensus        10 ~l~~~~~~~~~~~~~ll~~p~~~~~~l~~~-~e~~c~y~~~vm~~yw~~Ealpl~vtal~p~~l~p~~gi~~s~eva~~y   88 (586)
T KOG1281|consen   10 TLLQYRSLLVLNRTPLLLLPKKLDKLLHSS-EEARCAYVILVMAVYWVTEALPLAVTALLPIVLFPFFGIVRSNEVANEY   88 (586)
T ss_pred             HHHHhhhhheeehhhhhhcchhhhhhcCCc-HHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhcCccHHHHHHHH
Confidence            44445552 333345554431111112333 4677999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC
Q 035612          116 MDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL  195 (534)
Q Consensus       116 ~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~  195 (534)
                      .+|+..++.|..+++.++|++++|+|+|.++.+.+|.   +|.++.+++|..++++|+|+||+|++++|+|++.++.+++
T Consensus        89 f~d~~~l~~~~l~~A~AvE~~~Lh~riaL~~~~~vg~---~P~~l~lg~m~~taflsmwisntA~tamm~pi~~avL~~l  165 (586)
T KOG1281|consen   89 FKDTNLLFLGGLIMALAVEKCNLHKRIALKVLRKVGV---EPARLMLGFMGVTAFLSMWISNTATTAMMIPIATAVLQEL  165 (586)
T ss_pred             HhhhhHHHhhhHHHHHHHHHhhhhHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999996   6889999999999999999999999999999999999987


Q ss_pred             CCCCc-----------------c--------------------h-----------------hhhhhhhhHHHHHHHHHhh
Q 035612          196 PEVPL-----------------Q--------------------S-----------------TLVRKYCKAVVLGVIYSAA  221 (534)
Q Consensus       196 g~~~~-----------------~--------------------~-----------------~~~~~~~~~l~l~i~~aa~  221 (534)
                      ....+                 +                    .                 ++.+.+.+.+.++++++++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vp~~~v~~~~~~~~~g~~~~~~~~~i~~~~~s~~~~~~~~g~~L~ia~Sa~  245 (586)
T KOG1281|consen  166 PSFNDEEQHRMLESVSHLWAVEAIPTSFLVPLLTVFFPILKDETGKPMSPTSSSILSTMWSSTIMLLLKGFTLGIAYSAY  245 (586)
T ss_pred             cccchhhhhhhHHHhhcchhhhcCCcccCCcchhhcccccCCccCCCCCcchhhhhhhccchHHHHHHHHHHHHHHHHHh
Confidence            66211                 0                    0                 0112367899999999999


Q ss_pred             hccccccccchhHHHHHHHHhhhCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------CCCcchh
Q 035612          222 VGGMSTLTGTGVNLILVGMWKTYFP-EANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRG----------SGPALSE  290 (534)
Q Consensus       222 igg~~t~~g~~~n~i~~~~~~~~~~-~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~----------~~~~~~~  290 (534)
                      +||.+|.+|+.+|++..+.++..+| +....||.+|+.+++|+.+.++.+.|.++.++|.+..          +.+..++
T Consensus       246 igg~~titGT~pnlVll~~~~~~fp~s~~~~Nf~swl~Fs~ppmL~~L~~~w~~l~~lflG~~~~~~~~~~~s~~~s~q~  325 (586)
T KOG1281|consen  246 IGGTLTITGTAPNLVLLGNMNVRFPLSMWVSNFASWLFFSFPPMLRYLLASWPFLQALFLGIALAANIGGMSSPISSPQN  325 (586)
T ss_pred             hcchhhhcCCCccHHHHHHHHHhccccccccchHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHhhhhhcCCCCCcCChHH
Confidence            9999999999999999999999998 4567899999999999999999999999888775211          1122233


Q ss_pred             hhhHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHhhcccCCCCCCcccccccc--cCchHHHHHHHHHHHhccCcccc-
Q 035612          291 YLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDR--AGDGTASVSCDGNIVVHNSEHEA-  367 (534)
Q Consensus       291 ~~~~~~~~~~~~~lg~~~~~e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~--~~~~~va~l~~~ll~~l~~~~~~-  367 (534)
                      ...+++++++|+++||++..|+.+.++|++++.+|++|++ ++.|||++.+++.  ..|++++++++.+++.+|++.+. 
T Consensus       326 ~~a~~~i~~~y~~lG~~~~~e~~v~ilfil~v~lw~tr~p-~~~pgw~~~f~~~~~~~d~t~~~~i~ilLf~lps~~~~f  404 (586)
T KOG1281|consen  326 IVAKKVIKPEYDGLGPMFFAEKPVFILFILLVWLWFTRDP-GFVPGWGDLFKPGFFQSDSTSVVIITILLFCLPSQIPGF  404 (586)
T ss_pred             HHHHHHhhHhhcccccchHHHHHHHHHHHHHHHHHHhcCC-CCccchHhhcCCccceehhhHHHHHHHHhheecccCccc
Confidence            4567788999999999999999999999999999999999 8899999988664  78999999999999999986541 


Q ss_pred             ------------ccCccccccccc-CCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHH
Q 035612          368 ------------KGEKLMDWNKCK-KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAII  434 (534)
Q Consensus       368 ------------~~~~~l~~~~~~-~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~l  434 (534)
                                  ..+++++|++.+ +++|+++++.+|+++++++.++||+.+|+++.+.++++.|.+.+.++++++..++
T Consensus       405 ~~~~~~~~~p~~~~~~l~~w~~~q~~fPWsIvlLlgGGfALakgv~sSGLs~~I~~~L~~l~~~p~~~i~li~~ll~~v~  484 (586)
T KOG1281|consen  405 GKSGFIAIIPIVVFFGLGLWKTVQFTFPWSIVLLLGGGFALAKGVSSSGLSSLIGNALKPLESLPVFAILLIFSLLILVV  484 (586)
T ss_pred             cccCcccccccccccCccchhhhcccCCchHhhhhccchhhhhhcccccHHHHHHHhhhhcccCChHHHHHHHHHHHHHH
Confidence                        236889999974 6999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHH
Q 035612          435 TEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAA  514 (534)
Q Consensus       435 t~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii  514 (534)
                      |+|.||++++.+++|++.++|+++|.||.+++++.++++|+++++|+|+|||++++++|+.+.+||+|.|..+++.+.+.
T Consensus       485 TeF~Sntata~IfiPIl~ela~~l~~hplyl~lp~tl~~SfAf~LPvstpPNaivfs~~~~k~~dm~~~G~~l~i~~~a~  564 (586)
T KOG1281|consen  485 TEFVSNTATASIFIPILAELAEALGIHPLYLMLPTTLACSFAFMLPVSTPPNAIVFSMGDIKGKDMLKVGLFLNIGGPAI  564 (586)
T ss_pred             HHHhcchhheeehHHhHHHHHHhcCCCCceeehhHHHHHHHHHhcCCCCCCCeEEEeecccchhhHhhhccchhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCC
Q 035612          515 MAFLMPTLGAYVFGTDG  531 (534)
Q Consensus       515 ~~~~~~~~~~~~~~~~~  531 (534)
                      ..+.++.|+..+|.+++
T Consensus       565 l~~~m~tw~~~~f~l~~  581 (586)
T KOG1281|consen  565 LLLFMNTWTLGYFILGT  581 (586)
T ss_pred             HHHHHHHHHHHhchhcc
Confidence            99999999999998664

>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families Back     alignment and domain information
>TIGR00785 dass anion transporter Back     alignment and domain information
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15445 arsenical pump membrane protein; Provisional Back     alignment and domain information
>cd01115 SLC13_permease Permease SLC13 (solute carrier 13) Back     alignment and domain information
>TIGR00935 2a45 arsenical pump membrane protein Back     alignment and domain information
>cd01116 P_permease Permease P (pink-eyed dilution) Back     alignment and domain information
>cd01118 ArsB_permease Anion permease ArsB Back     alignment and domain information
>PLN00136 silicon transporter; Provisional Back     alignment and domain information
>cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD Back     alignment and domain information
>cd01117 YbiR_permease Putative anion permease YbiR Back     alignment and domain information
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09547 nhaB sodium/proton antiporter; Reviewed Back     alignment and domain information
>TIGR00774 NhaB Na+/H+ antiporter NhaB Back     alignment and domain information
>PLN00137 NHAD transporter family protein; Provisional Back     alignment and domain information
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes Back     alignment and domain information
>TIGR00775 NhaD Na+/H+ antiporter, NhaD family Back     alignment and domain information
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00784 citMHS citrate transporter, CitMHS family Back     alignment and domain information
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR00786 dctM TRAP transporter, DctM subunit Back     alignment and domain information
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed Back     alignment and domain information
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional Back     alignment and domain information
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease Back     alignment and domain information
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein Back     alignment and domain information
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake Back     alignment and domain information
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional Back     alignment and domain information
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein Back     alignment and domain information
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed Back     alignment and domain information
>COG2851 CitM H+/citrate symporter [Energy production and conversion] Back     alignment and domain information
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein Back     alignment and domain information
>PRK14984 high-affinity gluconate transporter; Provisional Back     alignment and domain information
>PRK10472 low affinity gluconate transporter; Provisional Back     alignment and domain information
>PRK09821 putative transporter; Provisional Back     alignment and domain information
>cd01116 P_permease Permease P (pink-eyed dilution) Back     alignment and domain information
>PRK10034 fructuronate transporter; Provisional Back     alignment and domain information
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ] Back     alignment and domain information
>PRK11588 hypothetical protein; Provisional Back     alignment and domain information
>cd01118 ArsB_permease Anion permease ArsB Back     alignment and domain information
>PLN00136 silicon transporter; Provisional Back     alignment and domain information
>cd01115 SLC13_permease Permease SLC13 (solute carrier 13) Back     alignment and domain information
>TIGR00785 dass anion transporter Back     alignment and domain information
>TIGR00791 gntP gluconate transporter Back     alignment and domain information
>COG1288 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism] Back     alignment and domain information
>PRK15445 arsenical pump membrane protein; Provisional Back     alignment and domain information
>TIGR00935 2a45 arsenical pump membrane protein Back     alignment and domain information
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families Back     alignment and domain information
>PRK09921 permease DsdX; Provisional Back     alignment and domain information
>cd01117 YbiR_permease Putative anion permease YbiR Back     alignment and domain information
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family Back     alignment and domain information
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional Back     alignment and domain information
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD Back     alignment and domain information
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes Back     alignment and domain information
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional Back     alignment and domain information
>TIGR00529 AF0261 converved hypothetical integral membrane protein Back     alignment and domain information
>PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange Back     alignment and domain information
>PRK09547 nhaB sodium/proton antiporter; Reviewed Back     alignment and domain information
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN00137 NHAD transporter family protein; Provisional Back     alignment and domain information
>COG2056 Predicted permease [General function prediction only] Back     alignment and domain information
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family Back     alignment and domain information
>TIGR00775 NhaD Na+/H+ antiporter, NhaD family Back     alignment and domain information
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae Back     alignment and domain information
>COG3067 NhaB Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC Back     alignment and domain information
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC Back     alignment and domain information
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions Back     alignment and domain information
>TIGR00774 NhaB Na+/H+ antiporter NhaB Back     alignment and domain information
>COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion] Back     alignment and domain information
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only] Back     alignment and domain information
>TIGR00784 citMHS citrate transporter, CitMHS family Back     alignment and domain information
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism] Back     alignment and domain information
>TIGR00786 dctM TRAP transporter, DctM subunit Back     alignment and domain information
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed Back     alignment and domain information
>COG1757 NhaC Na+/H+ antiporter [Energy production and conversion] Back     alignment and domain information
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport Back     alignment and domain information
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed Back     alignment and domain information
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein Back     alignment and domain information
>TIGR00366 conserved hypothetical integral membrane protein Back     alignment and domain information
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC Back     alignment and domain information
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional Back     alignment and domain information
>PRK10420 L-lactate permease; Provisional Back     alignment and domain information
>TIGR00795 lctP L-lactate transport Back     alignment and domain information
>COG1620 LldP L-lactate permease [Energy production and conversion] Back     alignment and domain information
>COG4666 TRAP-type uncharacterized transport system, fused permease components [General function prediction only] Back     alignment and domain information
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function Back     alignment and domain information
>PRK09695 glycolate transporter; Provisional Back     alignment and domain information
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional Back     alignment and domain information
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional Back     alignment and domain information
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family Back     alignment and domain information
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein Back     alignment and domain information
>PRK11588 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein Back     alignment and domain information
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ] Back     alignment and domain information
>COG1906 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease Back     alignment and domain information
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT) Back     alignment and domain information
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised Back     alignment and domain information
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised Back     alignment and domain information
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae Back     alignment and domain information
>TIGR00791 gntP gluconate transporter Back     alignment and domain information
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC Back     alignment and domain information
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional Back     alignment and domain information
>COG1288 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG2851 CitM H+/citrate symporter [Energy production and conversion] Back     alignment and domain information
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism] Back     alignment and domain information
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family Back     alignment and domain information
>PRK10034 fructuronate transporter; Provisional Back     alignment and domain information
>TIGR00529 AF0261 converved hypothetical integral membrane protein Back     alignment and domain information
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake Back     alignment and domain information
>COG1757 NhaC Na+/H+ antiporter [Energy production and conversion] Back     alignment and domain information
>PRK09821 putative transporter; Provisional Back     alignment and domain information
>PRK10472 low affinity gluconate transporter; Provisional Back     alignment and domain information
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length Back     alignment and domain information
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism] Back     alignment and domain information
>COG2031 AtoE Short chain fatty acids transporter [Lipid metabolism] Back     alignment and domain information
>PRK09921 permease DsdX; Provisional Back     alignment and domain information
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins Back     alignment and domain information
>PF06149 DUF969: Protein of unknown function (DUF969); InterPro: IPR010374 This is a family of uncharacterised bacterial membrane proteins Back     alignment and domain information
>COG2056 Predicted permease [General function prediction only] Back     alignment and domain information
>PRK14984 high-affinity gluconate transporter; Provisional Back     alignment and domain information
>TIGR00366 conserved hypothetical integral membrane protein Back     alignment and domain information
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport Back     alignment and domain information
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins Back     alignment and domain information
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions Back     alignment and domain information
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length Back     alignment and domain information
>PRK10420 L-lactate permease; Provisional Back     alignment and domain information
>PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange Back     alignment and domain information
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only] Back     alignment and domain information
>COG3817 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion] Back     alignment and domain information
>TIGR00795 lctP L-lactate transport Back     alignment and domain information
>PRK09695 glycolate transporter; Provisional Back     alignment and domain information
>COG1620 LldP L-lactate permease [Energy production and conversion] Back     alignment and domain information
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT) Back     alignment and domain information
>PF13726 Na_H_antiport_2: Na+-H+ antiporter family Back     alignment and domain information
>COG4756 Predicted cation transporter [General function prediction only] Back     alignment and domain information
>COG3817 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function Back     alignment and domain information
>COG3067 NhaB Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4756 Predicted cation transporter [General function prediction only] Back     alignment and domain information
>COG3819 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query534
4f35_D449 Crystal Structure Of A Bacterial DicarboxylateSODIU 1e-25
>pdb|4F35|D Chain D, Crystal Structure Of A Bacterial DicarboxylateSODIUM SYMPORTER Length = 449 Back     alignment and structure 
Iteration: 1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 203/443 (45%), Gaps = 43/443 (9%)
Query: 72  LGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILAL 131
           +  LA++   WLTEA+ + +T++        FGI       +++ + +I L LG F LA 
Sbjct: 36  ISXLAFIAVLWLTEALHVTVTAILVPVXAVFFGIFETQAALNNFANSIIFLFLGGFALAA 95
Query: 132 AVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGI 191
           A  H  + K +A  +     G+       L G+   TA +S W+ N A A   +P+  G+
Sbjct: 96  AXHHQGLDKVIADKVLAXAQGKXSVAVFXLFGV---TALLSXWISNTATAAXXLPLVLGV 152
Query: 192 LQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPI 251
           L  +     +ST V      V+LGV YSA++GG++TL G+  N I          E   +
Sbjct: 153 LSKVDADKQRSTYVF-----VLLGVAYSASIGGIATLVGSPPNAIAAA-------EVG-L 199
Query: 252 SFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAE 311
           SF+ W  FG P A        AI  L++  + +     E LD+A +  +          +
Sbjct: 200 SFTDWXKFGLPTAXXXLPX--AIAILYFLLKPTLNGXFE-LDRAPVNWDK--------GK 248
Query: 312 KMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEK 371
            + L +FG+ + LW+  S  +   G    F+     G A +      VVH          
Sbjct: 249 VVTLGIFGLTVFLWIFSSPINAALGGFKSFDTLVALG-AILXLSFARVVH---------- 297
Query: 372 LMDWNKCKKLP-WNIILLLGAGFAIADGVRTSGLADDLSKAL-DFLEAAPYLAIAPIVCL 429
              W + +K   W ++LL G G  +++ ++ +G +  L+ AL D +       +  +V  
Sbjct: 298 ---WKEIQKTADWGVLLLFGGGLCLSNVLKQTGTSVFLANALSDXVSHXGIFVVILVVAT 354
Query: 430 ISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVG 489
               +TEF SN A+  L++P+   +A+     P+LL V  A+ A  +F LP  TP N + 
Sbjct: 355 FVVFLTEFASNTASAALLIPVFATVAEAFGXSPVLLSVLIAVAASCAFXLPVATPPNAIV 414
Query: 490 FTTGHIEIQDMIKTGLPLKIAGI 512
           F +GHI+  +  + GL L IA I
Sbjct: 415 FASGHIKQSEXXRVGLYLNIACI 437

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query534
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 36/252 (14%), Positives = 68/252 (26%), Gaps = 86/252 (34%)

Query: 296 NLKRELDMLGP--------MAFAEKMVLAV-------------FGMLIALWMT----RSI 330
            L++ L  L P        +  + K  +A+             F +    W+      S 
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF---WLNLKNCNSP 195

Query: 331 TDDIPGWGALFNDRAGDGTASVSCDGNIVVH-NSEHEAKGEKLMDWNKCKKLPWNIILLL 389
              +     L      + T+      NI +  +S        L        L   ++L  
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVL-- 250

Query: 390 GAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLP 449
                    V+ +   +    A +              C I  ++T  T     T  +  
Sbjct: 251 -------LNVQNAKAWN----AFNL------------SCKI--LLT--TRFKQVTDFLSA 283

Query: 450 LLIQIAKTMHV---HPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDM---IKT 503
                A T H+   H  + + P  + +     L                  QD+   + T
Sbjct: 284 -----ATTTHISLDHHSMTLTPDEVKSLLLKYL--------------DCRPQDLPREVLT 324

Query: 504 GLPLKIAGIAAM 515
             P +++ IA  
Sbjct: 325 TNPRRLSIIAES 336
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query534
4f35_D449 Transporter, NADC family; transport protein; HET: 100.0
4f35_D449 Transporter, NADC family; transport protein; HET: 99.73
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae} Back     alignment and structure
Probab=100.00  E-value=3.2e-61  Score=508.42  Aligned_cols=439  Identities=27%  Similarity=0.473  Sum_probs=366.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhccCChHHHHhhhcchHH
Q 035612           41 PNNFYILLGPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVI  120 (534)
Q Consensus        41 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v~~~~~~~~i  120 (534)
                      ||.+.++..++++..++..  .+.+++++++++++++++++|++|++|.+++|+++.++++++|+.+++|++++|.++++
T Consensus         7 r~~~~~~~~~~l~~~~~~~--~p~~~~~~~~lai~~~~~~lw~te~iP~~vtall~~~l~~l~gv~~~~~a~~~~~~~~i   84 (449)
T 4f35_D            7 RNSLIVLADVALFLALYHF--LPFEHNVVLGISMLAFIAVLWLTEALHVTVTAILVPVMAVFFGIFETQAALNNFANSII   84 (449)
T ss_dssp             THHHHHHHHHHHHHHHHHH--CCSTTHHHHHHHHHHHHHHHHTTTSSCSHHHHHHHHHHHHHTTSSCHHHHHTTTTCHHH
T ss_pred             hhHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHCCCCHHHHHHHccCHHH
Confidence            3444455556666554433  34667899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCc
Q 035612          121 ALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPL  200 (534)
Q Consensus       121 ~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~  200 (534)
                      ++++|+++++.+++|||++||+|++++++.|+   +++++.++++..++++|+++||+++++++.|++.+++++.+.+++
T Consensus        85 ~li~g~~~la~al~~tGl~~riA~~il~~~g~---~~~~l~~~~~~~~~~lS~~isn~a~~~~~~Pi~~~i~~~~~~~~~  161 (449)
T 4f35_D           85 FLFLGGFALAAAMHHQGLDKVIADKVLAMAQG---KMSVAVFMLFGVTALLSMWISNTATAAMMLPLVLGVLSKVDADKQ  161 (449)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCS---CTHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHSCSCCCSSC
T ss_pred             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHhcchHHHHHhchHHHHHHHHHhhccc
Confidence            99999999999999999999999999999886   688899999999999999999999999999999999999998774


Q ss_pred             chhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035612          201 QSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYC  280 (534)
Q Consensus       201 ~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~  280 (534)
                           ++..+.+++++++++++||++|++|+++|.+..+        +.+++|.||+.+++|+.++.+++.+.++++.+|
T Consensus       162 -----~~~~~~lll~~~~aa~igg~~t~ig~~~N~i~~~--------~~~~~f~~~~~~~~p~~li~l~~~~~~l~~~~~  228 (449)
T 4f35_D          162 -----RSTYVFVLLGVAYSASIGGIATLVGSPPNAIAAA--------EVGLSFTDWMKFGLPTAMMMLPMAIAILYFLLK  228 (449)
T ss_dssp             -----CSSTTTTHHHHHHHHHHHHSSSSSSSHHHHHHHH--------HHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             -----hhHHHHHHHHHHHHHhhhhhcccCcCCCcccccc--------cccccHHHhhhhcCchHHHHHHHHHHHHHHHhc
Confidence                 4455678999999999999999999999998764        457899999999999999999999988887776


Q ss_pred             CCCCCCcchhhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHhhcccCC-CCCCcccccccccCchHHHHHHHHHHH
Q 035612          281 SRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITD-DIPGWGALFNDRAGDGTASVSCDGNIV  359 (534)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~e~~~l~~~~~~i~l~~~~~~~~-~~~~~~~~~~~~~~~~~va~l~~~ll~  359 (534)
                      |+.++.           +|+.++..+.+++|+.....+..++++|+.+.... ...++.      ..+..+++ .+++++
T Consensus       229 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~i~l~~~~~~l~~~~~~~~------~~~~~val-~~~~ll  290 (449)
T 4f35_D          229 PTLNGM-----------FELDRAPVNWDKGKVVTLGIFGLTVFLWIFSSPINAALGGFK------SFDTLVAL-GAILML  290 (449)
T ss_dssp             ------------------------CCCCCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCS------SHHHHHHH-HHHHHH
T ss_pred             cccccc-----------chhhccchhhhHHHHHHHHHHHHHHHHHHhhccccccccccc------chhHHHHH-HHHHHh
Confidence            654211           11223345567788888888888888888766421 111110      11233333 344444


Q ss_pred             hccCccccccCcccccccc-cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhh-hccccHHHHHHHHHHHHHHHHHh
Q 035612          360 VHNSEHEAKGEKLMDWNKC-KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDF-LEAAPYLAIAPIVCLISAIITEF  437 (534)
Q Consensus       360 ~l~~~~~~~~~~~l~~~~~-~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~-l~~~~~~~~~~~~~~~~~~lt~f  437 (534)
                      ...        ++++|||. ++++|+++++++|+++++++++++|+.+|+++.+.+ .++.+......+++.++.++|+|
T Consensus       291 ~~~--------~~l~~~~~~~~i~W~~l~~~~g~~~l~~~l~~sG~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~ls~f  362 (449)
T 4f35_D          291 SFA--------RVVHWKEIQKTADWGVLLLFGGGLCLSNVLKQTGTSVFLANALSDMVSHMGIFVVILVVATFVVFLTEF  362 (449)
T ss_dssp             HHT--------TSSCHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSHHHHHHHHHTTSEETEE
T ss_pred             hhh--------hccchhhhhcccCchHHHHhhhHHHHhHHHHhcCCHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHh
Confidence            333        57899995 889999999999999999999999999999999875 45666666666777777888999


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHH
Q 035612          438 TSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAF  517 (534)
Q Consensus       438 ~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~  517 (534)
                      +||+++++++.|++.+++++.|.||..++++.+++++++++||+|+++|++++|.|+++++||+|.|++++++++++...
T Consensus       363 ~sn~a~~~~l~Pi~~~~a~~~g~~p~~~~~~~~~~~s~~~~~p~~t~~n~i~~g~g~~~~~d~~k~G~~~~~~~~~v~~~  442 (449)
T 4f35_D          363 ASNTASAALLIPVFATVAEAFGMSPVLLSVLIAVAASCAFMLPVATPPNAIVFASGHIKQSEMMRVGLYLNIACIGLLTA  442 (449)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHCCCSSSSSSHHHHHHCSSGGGGTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhHhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHH
Q 035612          518 LMPTLG  523 (534)
Q Consensus       518 ~~~~~~  523 (534)
                      +.+.||
T Consensus       443 ~~~~~W  448 (449)
T 4f35_D          443 IAMLFW  448 (449)
T ss_dssp             HHHHTT
T ss_pred             HHHHhc
Confidence            888876
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00