Citrus Sinensis ID: 035614

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28

MTVIVLEPNESSNAENDTAVDGELDVPRRNAFGLDFRDFEKESLRNAIVQECYRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDHPHEYWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVAKGNNTTLPPAGLFIIRFHSFYAMHRHGAYTFLMNDEDKEMLKWLQVFNKYDLYSKSKYFPEKLKW

cEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHcccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccc

cEEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccEEEEcccccccccEEEcccccccccccccEEccHHHccccccccccccccccccccccccccEEEEcccHHHHHHHHHcccccccHHHHHHHHHcccccccccccHHHHccHHHHHHHHHHHHHcccccccccccccccccc

mtvivlepnessnaendtavdgeldvprrnafgldfrDFEKESLRNAIVQECYRKNHIYQTCEFANKKkeeygkldkaEMSIWECCELLKNyvdesdpdldepqIDHLLQTAEAIRRDHPHEYWLQLTALIHDLGKvllhpafgeetqwcvvgdtfplgcafdnnivhhqffkenpdsrnpafntklgiysenigldnitmswghDEYMYLVAKgnnttlppaglfiIRFHSFYAMHRHGAYTFLMNDEDKEMLKWLQVFNkydlyskskyfpeklkw

mtvivlepnessnaendtavdgeldvPRRNAFGLDFRDFEKESLRNAIVQecyrknhiyqtcefanKKKEEYGKLDKAEMSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDHPHEYWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVAKGNNTTLPPAGLFIIRFHSFYAMHRHGAYTFLMNDEDKEMLKWLQVFNkydlyskskyfpeklkw

*****************************NAFGLDFRDFEKESLRNAIVQECYRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKNYVDE*********IDHLLQTAEAIRRDHPHEYWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQFFKEN****NPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVAKGNNTTLPPAGLFIIRFHSFYAMHRHGAYTFLMNDEDKEMLKWLQVFNKYDLYSKSKYF******

MTVIVL*P********************RNAFGLDFRDFEKESLRNAIVQECYRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDHPHEYWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVAKGNNTTLPPAGLFIIRFHSFYAMHRHGAYTFLMNDEDKEMLKWLQVFNKYDLYSKSKYFPEKLKW

MTVIVLEPN*********AVDGELDVPRRNAFGLDFRDFEKESLRNAIVQECYRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDHPHEYWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVAKGNNTTLPPAGLFIIRFHSFYAMHRHGAYTFLMNDEDKEMLKWLQVFNKYDLYSKSKYFPEKLKW

MTVIVLEPNE*********VDGELDVP*****GLDFRDFEKESLRNAIVQECYRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDHPHEYWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVAKGNNTTLPPAGLFIIRFHSFYAMHRHGAYTFLMNDEDKEMLKWLQVFNKYDLYSKSKYFPEKLKW

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		278	2.2.26 [Sep-21-2011]
Q8L799		311	Inositol oxygenase 1 OS=A	yes	no	0.985	0.881	0.619	1e-105
Q5Z8T3		308	Probable inositol oxygena	yes	no	1.0	0.902	0.600	1e-102
O82200		317	Inositol oxygenase 2 OS=A	no	no	0.917	0.804	0.649	2e-98
Q8H1S0		317	Inositol oxygenase 4 OS=A	no	no	0.942	0.826	0.628	3e-97
Q9FJU4		314	Inositol oxygenase 5 OS=A	no	no	0.910	0.805	0.628	1e-95
Q54GH4		292	Inositol oxygenase OS=Dic	yes	no	0.866	0.825	0.513	7e-73
Q4V8T0		278	Inositol oxygenase OS=Dan	yes	no	0.859	0.859	0.475	7e-60
A7MBE4		285	Inositol oxygenase OS=Bos	yes	no	0.845	0.824	0.454	1e-58
Q8WN98		282	Inositol oxygenase OS=Sus	yes	no	0.845	0.833	0.445	6e-56
Q5REY9		285	Inositol oxygenase OS=Pon	yes	no	0.845	0.824	0.445	2e-55

>sp\|Q8L799\|MIOX1_ARATH Inositol oxygenase 1 OS=Arabidopsis thaliana GN=MIOX1 PE=2 SV=1	Back alignment and function desciption

 Score =  381 bits (979), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/294 (61%), Positives = 220/294 (74%), Gaps = 20/294 (6%)

Query: 5   VLEPNESSNAENDT--AVDGELDVPRRNAFGLDFRDFEKESLRNAIVQECYRKNHIYQTC 62
           ++E N+ +  E +T   +D   + P  N+FG  FRD++ ES R   V+E YR NHI QT 
Sbjct: 18  IVEKNQGNGKEEETELVLDAGFEAPHTNSFGRTFRDYDAESERRRGVEEFYRVNHIGQTV 77

Query: 63  EFANKKKEEYGKLDKAEMSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDHPHE 122
           +F  K +EEY KL++ EMSIWECCELL  ++DESDPDLDEPQI+HLLQTAEAIR+D+P E
Sbjct: 78  DFVRKMREEYEKLNRTEMSIWECCELLNEFIDESDPDLDEPQIEHLLQTAEAIRKDYPDE 137

Query: 123 YWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQFFKENPDSRNPA 182
            WL LT LIHDLGKVLLH +FGE  QW VVGDTFP+GCAFD +IVHH++FKENPD  NP+
Sbjct: 138 DWLHLTGLIHDLGKVLLHSSFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYDNPS 197

Query: 183 FNTKLGIYSENIGLDNITMSWGHDEYMYLVAKGNNTTLPPAGLFIIRFHSFYAMHRHGAY 242
           +N+K GIY+E  GLDN+ MSWGHD+YMYLVAK N TTLP AGLFIIR+HSFYA+H+  AY
Sbjct: 198 YNSKYGIYTEGCGLDNVLMSWGHDDYMYLVAKENQTTLPSAGLFIIRYHSFYALHKSEAY 257

Query: 243 TFLMNDEDKEMLKWLQVFNKYDLYSKS------------------KYFPEKLKW 278
             LMN+ED+E +KWL+VFNKYDLYSKS                  KYFP KLKW
Sbjct: 258 KHLMNNEDRENMKWLKVFNKYDLYSKSKVRVNVEEVKPYYLSLTNKYFPSKLKW 311

Involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. May be also involved in plant ascorbate biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 3EC: .EC: 9EC: 9EC: .EC: 1

>sp\|Q5Z8T3\|MIOX_ORYSJ Probable inositol oxygenase OS=Oryza sativa subsp. japonica GN=Os06g0561000 PE=2 SV=1	Back alignment and function description

>sp\|O82200\|MIOX2_ARATH Inositol oxygenase 2 OS=Arabidopsis thaliana GN=MIOX2 PE=2 SV=2	Back alignment and function description

>sp\|Q8H1S0\|MIOX4_ARATH Inositol oxygenase 4 OS=Arabidopsis thaliana GN=MIOX4 PE=2 SV=1	Back alignment and function description

>sp\|Q9FJU4\|MIOX5_ARATH Inositol oxygenase 5 OS=Arabidopsis thaliana GN=MIOX5 PE=2 SV=1	Back alignment and function description

>sp\|Q54GH4\|MIOX_DICDI Inositol oxygenase OS=Dictyostelium discoideum GN=miox PE=3 SV=1	Back alignment and function description

>sp\|Q4V8T0\|MIOX_DANRE Inositol oxygenase OS=Danio rerio GN=miox PE=2 SV=1	Back alignment and function description

>sp\|A7MBE4\|MIOX_BOVIN Inositol oxygenase OS=Bos taurus GN=MIOX PE=2 SV=1	Back alignment and function description

>sp\|Q8WN98\|MIOX_PIG Inositol oxygenase OS=Sus scrofa GN=MIOX PE=1 SV=1	Back alignment and function description

>sp\|Q5REY9\|MIOX_PONAB Inositol oxygenase OS=Pongo abelii GN=MIOX PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		278
116786574		316	unknown [Picea sitchensis]	1.0	0.879	0.623	1e-108
192338750		315	myo-inositol oxygenase [Eucalyptus grand	0.949	0.838	0.648	1e-104
30683840		311	inositol oxygenase 1 [Arabidopsis thalia	0.985	0.881	0.619	1e-103
238478480		309	inositol oxygenase 1 [Arabidopsis thalia	0.985	0.886	0.619	1e-103
110740103		294	hypothetical protein [Arabidopsis thalia	0.985	0.931	0.619	1e-103
225445025		309	PREDICTED: probable inositol oxygenase [	1.0	0.899	0.605	1e-103
26451656		311	unknown protein [Arabidopsis thaliana] g	0.985	0.881	0.615	1e-103
297849866		311	myo-inisitol oxygenase [Arabidopsis lyra	0.985	0.881	0.619	1e-103
7262695		422	Strong similarity to an unknown protein	0.956	0.630	0.652	1e-102
225442398		304	PREDICTED: inositol oxygenase 1 [Vitis v	1.0	0.914	0.601	1e-102

>gi\|116786574\|gb\|ABK24160.1\| unknown [Picea sitchensis]	Back alignment and taxonomy information

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/316 (62%), Positives = 226/316 (71%), Gaps = 38/316 (12%)

Query: 1   MTVIVLEPNESSNAENDTAV--------------------DGELDVPRRNAFGLDFRDFE 40
           MTVIV EP    +  N T +                    DG    P  NAFG  FRD++
Sbjct: 1   MTVIVQEPLLEGDEVNQTQIVSEEKRGNGDGPSESDILQLDGGFVTPDSNAFGHSFRDYD 60

Query: 41  KESLRNAIVQECYRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKNYVDESDPDL 100
           KES R A VQE YR NHI QT E+   K+E YGKLDKA MSIWECCELL  +VDESDPDL
Sbjct: 61  KESERRAGVQEFYRINHINQTYEYVLSKREHYGKLDKAVMSIWECCELLNEFVDESDPDL 120

Query: 101 DEPQIDHLLQTAEAIRRDHPHEYWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGC 160
           DEPQI+HLLQTAEAIR+D+P+E WL LT LIHDLGKVLLHP+FGEE QW  VGDT+PLGC
Sbjct: 121 DEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPSFGEEPQWAAVGDTYPLGC 180

Query: 161 AFDNNIVHHQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVAKGNNTTL 220
           AFD +IVH+++F ENPD  NP +NTK G+YSE  GL+N+ +SWGHDEYM++VAK N TTL
Sbjct: 181 AFDESIVHYEYFNENPDFYNPKYNTKYGVYSEKCGLENVIISWGHDEYMHMVAKMNKTTL 240

Query: 221 PPAGLFIIRFHSFYAMHRHGAYTFLMNDEDKEMLKWLQVFNKYDLYSKS----------- 269
           PPA LFIIRFHSFYAMHR GAYT LMNDEDKEML+W+++FNKYDLYSKS           
Sbjct: 241 PPAALFIIRFHSFYAMHRAGAYTHLMNDEDKEMLEWVKIFNKYDLYSKSKVRVDVEEVKP 300

Query: 270 -------KYFPEKLKW 278
                  KYFP KL+W
Sbjct: 301 YYQSLIDKYFPSKLRW 316

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|192338750\|gb\|ACF04280.1\| myo-inositol oxygenase [Eucalyptus grandis]	Back alignment and taxonomy information

>gi|30683840|ref|NP_172904.2| inositol oxygenase 1 [Arabidopsis thaliana] gi|75154124|sp|Q8L799.1|MIOX1_ARATH RecName: Full=Inositol oxygenase 1; AltName: Full=Myo-inositol oxygenase 1; Short=AtMIOX1; Short=MI oxygenase 1 gi|22531100|gb|AAM97054.1| unknown protein [Arabidopsis thaliana] gi|23197958|gb|AAN15506.1| unknown protein [Arabidopsis thaliana] gi|51968372|dbj|BAD42878.1| unknown protein [Arabidopsis thaliana] gi|51971577|dbj|BAD44453.1| unknown protein [Arabidopsis thaliana] gi|332191053|gb|AEE29174.1| inositol oxygenase 1 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|238478480\|ref\|NP_001154337.1\| inositol oxygenase 1 [Arabidopsis thaliana] gi\|332191054\|gb\|AEE29175.1\| inositol oxygenase 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|110740103\|dbj\|BAF01953.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|225445025\|ref\|XP_002283119.1\| PREDICTED: probable inositol oxygenase [Vitis vinifera] gi\|297738724\|emb\|CBI27969.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|26451656\|dbj\|BAC42925.1\| unknown protein [Arabidopsis thaliana] gi\|51969778\|dbj\|BAD43581.1\| unknown protein [Arabidopsis thaliana] gi\|51969808\|dbj\|BAD43596.1\| unknown protein [Arabidopsis thaliana] gi\|62321202\|dbj\|BAD94364.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297849866\|ref\|XP_002892814.1\| myo-inisitol oxygenase [Arabidopsis lyrata subsp. lyrata] gi\|297338656\|gb\|EFH69073.1\| myo-inisitol oxygenase [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|7262695\|gb\|AAF43953.1\|AC012188_30 Strong similarity to an unknown protein from Arabidopsis thaliana gb\|AL049171.1 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|225442398\|ref\|XP_002282395.1\| PREDICTED: inositol oxygenase 1 [Vitis vinifera] gi\|297743146\|emb\|CBI36013.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		278
TAIR\|locus:2012572		311	MIOX1 "myo-inositol oxygenase	0.956	0.855	0.652	4.1e-102
TAIR\|locus:2052015		317	MIOX2 "myo-inositol oxygenase	0.884	0.776	0.692	4.2e-96
TAIR\|locus:2165061		314	MIOX5 "myo-inositol oxygenase	0.902	0.799	0.661	3.8e-93
DICTYBASE\|DDB_G0290161		292	miox "inositol oxygenase" [Dic	0.830	0.791	0.548	3.2e-73
ZFIN\|ZDB-GENE-050913-113		283	miox "myo-inositol oxygenase"	0.859	0.844	0.475	1.9e-60
CGD\|CAL0002203		340	orf19.3894 [Candida albicans (	0.931	0.761	0.471	3.1e-60
UNIPROTKB\|Q5AKC6		340	IOX1 "Likely inositol oxygenas	0.931	0.761	0.471	3.1e-60
FB\|FBgn0036262		292	CG6910 [Drosophila melanogaste	0.845	0.804	0.489	4.5e-59
ASPGD\|ASPL0000003632		312	AN5985 [Emericella nidulans (t	0.931	0.830	0.463	4e-58
UNIPROTKB\|A7MBE4		285	MIOX "Inositol oxygenase" [Bos	0.924	0.901	0.433	2.2e-57

TAIR\|locus:2012572 MIOX1 "myo-inositol oxygenase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 978 (349.3 bits), Expect = 4.1e-102, Sum P(2) = 4.1e-102
 Identities = 175/268 (65%), Positives = 213/268 (79%)

Query:     5 VLEPNESSNAENDT--AVDGELDVPRRNAFGLDFRDFEKESLRNAIVQECYRKNHIYQTC 62
             ++E N+ +  E +T   +D   + P  N+FG  FRD++ ES R   V+E YR NHI QT 
Sbjct:    18 IVEKNQGNGKEEETELVLDAGFEAPHTNSFGRTFRDYDAESERRRGVEEFYRVNHIGQTV 77

Query:    63 EFANKKKEEYGKLDKAEMSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDHPHE 122
             +F  K +EEY KL++ EMSIWECCELL  ++DESDPDLDEPQI+HLLQTAEAIR+D+P E
Sbjct:    78 DFVRKMREEYEKLNRTEMSIWECCELLNEFIDESDPDLDEPQIEHLLQTAEAIRKDYPDE 137

Query:   123 YWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQFFKENPDSRNPA 182
              WL LT LIHDLGKVLLH +FGE  QW VVGDTFP+GCAFD +IVHH++FKENPD  NP+
Sbjct:   138 DWLHLTGLIHDLGKVLLHSSFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYDNPS 197

Query:   183 FNTKLGIYSENIGLDNITMSWGHDEYMYLVAKGNNTTLPPAGLFIIRFHSFYAMHRHGAY 242
             +N+K GIY+E  GLDN+ MSWGHD+YMYLVAK N TTLP AGLFIIR+HSFYA+H+  AY
Sbjct:   198 YNSKYGIYTEGCGLDNVLMSWGHDDYMYLVAKENQTTLPSAGLFIIRYHSFYALHKSEAY 257

Query:   243 TFLMNDEDKEMLKWLQVFNKYDLYSKSK 270
               LMN+ED+E +KWL+VFNKYDLYSKSK
Sbjct:   258 KHLMNNEDRENMKWLKVFNKYDLYSKSK 285

GO:0005506 "iron ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0019310 "inositol catabolic process" evidence=IEA

GO:0050113 "inositol oxygenase activity" evidence=IEA;IMP

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006949 "syncytium formation" evidence=IGI

TAIR\|locus:2052015 MIOX2 "myo-inositol oxygenase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2165061 MIOX5 "myo-inositol oxygenase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0290161 miox "inositol oxygenase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050913-113 miox "myo-inositol oxygenase" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

CGD\|CAL0002203 orf19.3894 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5AKC6 IOX1 "Likely inositol oxygenase" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

FB\|FBgn0036262 CG6910 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000003632 AN5985 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|A7MBE4 MIOX "Inositol oxygenase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8WN98	MIOX_PIG	1, ., 1, 3, ., 9, 9, ., 1	0.4458	0.8453	0.8333	yes	no
Q9QXN5	MIOX_MOUSE	1, ., 1, 3, ., 9, 9, ., 1	0.4333	0.8453	0.8245	yes	no
Q4V8T0	MIOX_DANRE	1, ., 1, 3, ., 9, 9, ., 1	0.4756	0.8597	0.8597	yes	no
Q8L799	MIOX1_ARATH	1, ., 1, 3, ., 9, 9, ., 1	0.6190	0.9856	0.8810	yes	no
Q9QXN4	MIOX_RAT	1, ., 1, 3, ., 9, 9, ., 1	0.4291	0.8453	0.8245	yes	no
Q5Z8T3	MIOX_ORYSJ	1, ., 1, 3, ., 9, 9, ., 1	0.6006	1.0	0.9025	yes	no
Q9UGB7	MIOX_HUMAN	1, ., 1, 3, ., 9, 9, ., 1	0.4416	0.8453	0.8245	yes	no
A7MBE4	MIOX_BOVIN	1, ., 1, 3, ., 9, 9, ., 1	0.4541	0.8453	0.8245	yes	no
Q54GH4	MIOX_DICDI	1, ., 1, 3, ., 9, 9, ., 1	0.5132	0.8669	0.8253	yes	no
Q5REY9	MIOX_PONAB	1, ., 1, 3, ., 9, 9, ., 1	0.4458	0.8453	0.8245	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.13.99	0.963
3rd Layer	1.13.99.1	0.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		278
pfam05153		255	pfam05153, DUF706, Family of unknown function (DUF	1e-139

>gnl\|CDD\|191210 pfam05153, DUF706, Family of unknown function (DUF706)	Back alignment and domain information

 Score =  392 bits (1010), Expect = e-139
 Identities = 144/248 (58%), Positives = 170/248 (68%), Gaps = 20/248 (8%)

Query: 49  VQECYRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKNYVDESDPDLDEPQIDHL 108
           V+E YR+ H  QT +F  K + E+ K  +A+M+IWE  ELL   VDESDPD D PQI HL
Sbjct: 10  VREFYREQHTKQTVDFVKKARAEFLKFTRAKMTIWEALELLNTLVDESDPDTDLPQIQHL 69

Query: 109 LQTAEAIRRDHPHEYWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVH 168
           LQTAEAIRRDHP   W+ LT LIHDLGKVL    FG E QW VVGDTFP+GCAF  +IV+
Sbjct: 70  LQTAEAIRRDHPDPDWMHLTGLIHDLGKVLAF--FGGEPQWAVVGDTFPVGCAFSESIVY 127

Query: 169 HQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVAKGNNTTLPPAGLFII 228
            + FK NPD  NP +NTK GIY  N GLDN+ MSWGHDEY+Y V K N +TLP   L++I
Sbjct: 128 PESFKGNPDYDNPKYNTKYGIYQPNCGLDNVMMSWGHDEYLYQVLKHNKSTLPEEALYMI 187

Query: 229 RFHSFYAMHRHGAYTFLMNDEDKEMLKWLQVFNKYDLYSKS------------------K 270
           R+HSFY  HR GAYT LMN++D+EMLKW++ FN YDLYSKS                  K
Sbjct: 188 RYHSFYPWHREGAYTHLMNEKDEEMLKWVKAFNPYDLYSKSDDPPDVEALKPYYQELIDK 247

Query: 271 YFPEKLKW 278
           YFP  L+W
Sbjct: 248 YFPGVLEW 255

Family of uncharacterized eukaryotic function. Some members have a described putative function, but a common theme is not evident. Length = 255

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		278
PF05153		253	DUF706: Family of unknown function (DUF706) ; Inte	100.0
KOG1573		204	consensus Aldehyde reductase [General function pre	100.0
TIGR03276		179	Phn-HD phosphonate degradation operons associated	97.1
smart00471		124	HDc Metal dependent phosphohydrolases with conserv	95.54
TIGR00277		80	HDIG uncharacterized domain HDIG. This domain is f	93.83
TIGR00488		158	putative HD superfamily hydrolase of NAD metabolis	93.63
PF01966		122	HD: HD domain; InterPro: IPR006674 This domain is	93.49
COG4341		186	Predicted HD phosphohydrolase [General function pr	92.5
PRK00106		535	hypothetical protein; Provisional	90.66
PF08668		196	HDOD: HDOD domain; InterPro: IPR013976 This domain	90.42
TIGR01596		177	cas3_HD CRISPR-associated endonuclease Cas3-HD. CR	90.12
cd00077		145	HDc Metal dependent phosphohydrolases with conserv	88.64
COG2316		212	Predicted hydrolase (HD superfamily) [General func	81.02
TIGR00295		164	conserved hypothetical protein TIGR00295. This set	80.66
TIGR03319		514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	80.05

>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1	Back alignment and domain information

Probab=100.00  E-value=5.4e-135  Score=919.99  Aligned_cols=232  Identities=65%  Similarity=1.128  Sum_probs=186.5

Q ss_pred             hhHHHHHHHHHhhhhccHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHhhCCCCCc
Q 035614           45 RNAIVQECYRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDHPHEYW  124 (278)
Q Consensus        45 r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW  124 (278)
                      |++||++|||+||++||||||++||++|++++|++|||||||++||+||||||||+|+|||+||||||||||+|||+|||
T Consensus         4 ~~~~V~~~Y~~~h~~QTv~fv~~~~~~~~~~~~~~Mti~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~dW   83 (253)
T PF05153_consen    4 ACDRVKEFYRLQHTNQTVDFVKKMRAKYLKFDHAEMTIWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPDW   83 (253)
T ss_dssp             -HHHHHHHHHHHHCC--HHHHHHHHHHHTT--SEEE-HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-HH
T ss_pred             HhHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCcceeeHHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcch
Confidence            46779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhcccccccccCCCCCCceeeecCeeeeecccCCccccccccccCCCCCCccCCCCCCcccCCCCccccccccC
Q 035614          125 LQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWG  204 (278)
Q Consensus       125 ~qLtGLiHDLGKvl~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~~~CGLdnV~mSWG  204 (278)
                      ||||||||||||||++  ||++|||+||||||||||+|+++|||+++|++|||.+||+|||++|||+||||||||+||||
T Consensus        84 ~~LtGLiHDLGKvl~~--~~~e~QW~vvGDTfpVGC~f~~~iv~~e~f~~NpD~~~~~YnTk~GiY~~~CGLdnv~msWg  161 (253)
T PF05153_consen   84 MQLTGLIHDLGKVLAL--FGGEPQWAVVGDTFPVGCAFSESIVFPEFFKDNPDSKNPRYNTKYGIYEPNCGLDNVMMSWG  161 (253)
T ss_dssp             HHHHHHHTTGGGHHHH--C-T--GGGTSS---BSSS---TTSTTCCC-TT-GGGCSTTTSSSSTT--TT--GGGS-B-SS
T ss_pred             hhheehhccchhhhhh--hcCCCCceeecCceeEecccCccccChhhHhhCCCCCCccccCCCCccCCCCCccceeecCC
Confidence            9999999999999999  89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHhcCCCCCCccchhhhhccccccccccccccccCChhhHHHHHHHHHcCCccccccc---------------
Q 035614          205 HDEYMYLVAKGNNTTLPPAGLFIIRFHSFYAMHRHGAYTFLMNDEDKEMLKWLQVFNKYDLYSKS---------------  269 (278)
Q Consensus       205 HDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~~l~wv~~Fn~yDLYSK~---------------  269 (278)
                      ||||||+|||+|+||||+|||+|||||||||||++|+|+||||++|.+||+||++||||||||||               
T Consensus       162 HDEYlY~Vlk~n~~tLP~eaL~mIRyhSfypwH~~~~Y~~L~~~~D~~~l~wv~~Fn~~dLYSK~~~~pdve~l~PYY~~  241 (253)
T PF05153_consen  162 HDEYLYQVLKHNKSTLPEEALYMIRYHSFYPWHREGAYDHLMNEEDEEMLKWVKEFNKYDLYSKSDEPPDVEELKPYYQS  241 (253)
T ss_dssp             HHHHHHHHHHHCT----HHHHHHHHHTT-HHHHTTS--TTT--HHHHHHHHHHHHHHHHHHHT--SS---HCCCHHHHHH
T ss_pred             chHHHHHHHHcccCccCHHHHHHHHHhccccccccchhhHhhccCcHHHHHHHHHhCCcceeeCCCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999               


Q ss_pred             ---ccCCCCCCC
Q 035614          270 ---KYFPEKLKW  278 (278)
Q Consensus       270 ---ky~P~~l~W  278 (278)
                         ||||++|+|
T Consensus       242 LidKy~P~~l~W  253 (253)
T PF05153_consen  242 LIDKYFPGKLKW  253 (253)
T ss_dssp             HHHHHS-S-EEE
T ss_pred             HHHHHCCCcCCC
Confidence               999999998

13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.

>KOG1573 consensus Aldehyde reductase [General function prediction only]	Back alignment and domain information

>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein	Back alignment and domain information

>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif	Back alignment and domain information

>TIGR00277 HDIG uncharacterized domain HDIG	Back alignment and domain information

>TIGR00488 putative HD superfamily hydrolase of NAD metabolism	Back alignment and domain information

>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []	Back alignment and domain information

>COG4341 Predicted HD phosphohydrolase [General function prediction only]	Back alignment and domain information

>PRK00106 hypothetical protein; Provisional	Back alignment and domain information

>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity	Back alignment and domain information

>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD	Back alignment and domain information

>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif	Back alignment and domain information

>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]	Back alignment and domain information

>TIGR00295 conserved hypothetical protein TIGR00295	Back alignment and domain information

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		278
2huo_A		289	Crystal Structure Of Mouse Myo-Inositol Oxygenase I		3e-56
2ibn_A		246	Crystal Structure Of Human Myo-Inositol Oxygenase (		3e-46
2ibn_B		240	Crystal Structure Of Human Myo-Inositol Oxygenase (		7e-46

>pdb|2HUO|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase In Complex With Substrate Length = 289

Back alignment and structure

Iteration: 1

Score = 214 bits (546), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 104/240 (43%), Positives = 151/240 (62%), Gaps = 5/240 (2%) Query: 36 FRDFEKESLRNAIVQECYRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKNYVDE 95 FR++ L + + Y+ H +QT +F ++K+ +YG +M+I E +L + VDE Sbjct: 32 FRNYTSGPLLDRVF-TTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAVGMLDDLVDE 90 Query: 96 SDPDLDEPQIDHLLQTAEAIRRDHPHEYWLQLTALIHDLGKVLLHPAFGEETQWCVVGDT 155 SDPD+D P H QTAE IR+ HP + W L L+HDLGK++ A E QW VVGDT Sbjct: 91 SDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIM---ALWGEPQWAVVGDT 147 Query: 156 FPLGCAFDNNIVH-HQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVAK 214 FP+GC ++V F++NPD ++P ++T+LG+Y + GL+N+ MSWGHDEY+Y + K Sbjct: 148 FPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLENVLMSWGHDEYLYQMMK 207 Query: 215 GNNTTLPPAGLFIIRFHSFYAMHRHGAYTFLMNDEDKEMLKWLQVFNKYDLYSKSKYFPE 274 N +LP ++IRFHSFY H G Y L + +D +ML W+Q FNK+DLY+K P+ Sbjct: 208 FNKFSLPSEAFYMIRFHSFYPWHTGGDYRQLCSQQDLDMLPWVQEFNKFDLYTKCPDLPD 267

PyMOL of 2huo

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		278
2ibn_A		250	Inositol oxygenase; reductase, DIIRON, structural	1e-104
2huo_A		289	Inositol oxygenase; protein-substrate complex, HD	1e-104

>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4 Length = 250	Back alignment and structure

 Score =  302 bits (775), Expect = e-104
 Identities = 108/249 (43%), Positives = 143/249 (57%), Gaps = 22/249 (8%)

Query: 49  VQECYRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKNYVDESDPDLDEPQIDHL 108
           V   Y+  H +QT +F   K  ++G     +M++ E  +LL   VDESDPD+D P   H 
Sbjct: 5   VFTTYKLMHTHQTVDFVRSKHAQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHA 64

Query: 109 LQTAEAIRRDHPHEYWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVH 168
            QTAE IR+ HP + W  L  L+HDLGKVL   A   E QW VVGDTFP+GC    ++V 
Sbjct: 65  FQTAEGIRKAHPDKDWFHLVGLLHDLGKVL---ALFGEPQWAVVGDTFPVGCRPQASVVF 121

Query: 169 -HQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVAKGNNTTLPPAGLFI 227
               F++NPD ++P ++T+LG+Y  + GLD + MSWGHDEYMY V K N  +LPP   ++
Sbjct: 122 CDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWGHDEYMYQVMKFNKFSLPPEAFYM 181

Query: 228 IRFHSFYAMHRHGAYTFLMNDEDKEMLKWLQVFNKYDLYSKS------------------ 269
           IRFHSFY  H    Y  L + +D  ML W++ FNK+DLY+K                   
Sbjct: 182 IRFHSFYPWHTGRDYQQLCSQQDLAMLPWVREFNKFDLYTKCPDLPDVDKLRPYYQGLID 241

Query: 270 KYFPEKLKW 278
           KY P  L W
Sbjct: 242 KYCPGILSW 250

PyMOL of 2ibn

>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A* Length = 289	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		278
2huo_A		289	Inositol oxygenase; protein-substrate complex, HD	100.0
2ibn_A		250	Inositol oxygenase; reductase, DIIRON, structural	100.0
3ccg_A		190	HD superfamily hydrolase; NP_347894.1, HD domain,	93.99
2o08_A		188	BH1327 protein; putative HD superfamily hydrolase,	93.95
2ogi_A		196	Hypothetical protein SAG1661; structural genomics,	93.5
3hc1_A		305	Uncharacterized HDOD domain protein; HDOD domain p	91.74
3ljx_A		288	MMOQ response regulator; structural genomics, PSI-	91.32
3i7a_A		281	Putative metal-dependent phosphohydrolase; YP_9268	90.33
2qgs_A		225	Protein Se1688; alpha-helical protein, structural	88.06
3djb_A		223	Hydrolase, HD family; all alpha-helical protein.,	85.43
3m1t_A		275	Putative phosphohydrolase; structural genomics, jo	85.1
3b57_A		209	LIN1889 protein; Q92AN1, X-RAY, NESG, structural g	83.87
2pjq_A		231	Uncharacterized protein LP_2664; LPR71, NESG, stru	83.29
3dto_A		223	BH2835 protein; all alpha-helical protein, structu	83.01
2pq7_A		220	Predicted HD superfamily hydrolase; 104161995, HD	82.82

>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*	Back alignment and structure

Probab=100.00  E-value=4.4e-138  Score=951.96  Aligned_cols=256  Identities=43%  Similarity=0.805  Sum_probs=234.7

Q ss_pred             eecCC-CCCcccc----cccccCCCcchhhhhhHHHHHHHHHhhhhccHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhh
Q 035614           19 AVDGE-LDVPRRN----AFGLDFRDFEKESLRNAIVQECYRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKNYV   93 (278)
Q Consensus        19 ~~d~~-f~~p~~~----~~~~~fR~Y~~~~~r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lv   93 (278)
                      .+|++ +..|+.+    +++++||||+. +.+++||++|||+||++|||+||++||++|++++|++|||||||++||+||
T Consensus        10 ~~d~~~~~~p~~~~~~~k~~~~FR~Y~~-~~~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MtIweA~e~Ln~Lv   88 (289)
T 2huo_A           10 GPDPSLVYRPDVDPEMAKSKDSFRNYTS-GPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAVGMLDDLV   88 (289)
T ss_dssp             ----------------------CCCSSS-CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCC
T ss_pred             cCCccceeccCccccccccHHHhhCccc-chhHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhc
Confidence            37777 5667776    77899999997 556899999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCchhHHHHHHHHHHHHhhCCCCCchhhhhhhhcccccccccCCCCCCceeeecCeeeeecccCCcccccc-cc
Q 035614           94 DESDPDLDEPQIDHLLQTAEAIRRDHPHEYWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQ-FF  172 (278)
Q Consensus        94 DeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGLiHDLGKvl~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e-~F  172 (278)
                      ||||||+|+|||+||||||||||+|||++||||||||||||||||++   +++|||+||||||||||+|+++|||++ +|
T Consensus        89 DeSDPD~dl~qi~H~lQTAEaiR~d~pp~dW~qLtGLiHDLGKvl~~---~~epQW~vvGDTfpVGC~f~~~iv~~e~~F  165 (289)
T 2huo_A           89 DESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL---WGEPQWAVVGDTFPVGCRPQASVVFCDSTF  165 (289)
T ss_dssp             CSSCTTCCSCHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTGGGGGGG---GTCCGGGTSSCCCBSSSCCCTTSTTTTTSC
T ss_pred             CCcCCccchhHHHHHHHHHHHHHHhCCCcchheeeeecccchhhhhh---cCCCceeeecCcceeccccccccccchhhc
Confidence            99999999999999999999999998878999999999999999987   499999999999999999999999999 99


Q ss_pred             ccCCCCCCccCCCCCCcccCCCCccccccccCcchhHHHHHhcCCCCCCccchhhhhccccccccccccccccCChhhHH
Q 035614          173 KENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVAKGNNTTLPPAGLFIIRFHSFYAMHRHGAYTFLMNDEDKE  252 (278)
Q Consensus       173 ~~NPD~~~p~YnT~~GiY~~~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~  252 (278)
                      ++|||.+||+||||+|||+||||||||+||||||||||+|||+|+||||+|||+|||||||||||++|||+||||++|.+
T Consensus       166 ~~NpD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~~L~ne~D~~  245 (289)
T 2huo_A          166 QDNPDLQDPRYSTELGMYQPHCGLENVLMSWGHDEYLYQMMKFNKFSLPSEAFYMIRFHSFYPWHTGGDYRQLCSQQDLD  245 (289)
T ss_dssp             TTCGGGGSTTTSSSSTTCCTTCCGGGSCBCSSHHHHHHHHHHHTTCCCCHHHHHHHHHTTCHHHHTSSCCTTTCCHHHHH
T ss_pred             cCCCCCCCccccccCCcccCCCCccceeecccchHHHHHHHHcCCCCCCHHHHHHHHHhccCcccccccHhhhcChhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCccccccc------------------ccCCCCCCC
Q 035614          253 MLKWLQVFNKYDLYSKS------------------KYFPEKLKW  278 (278)
Q Consensus       253 ~l~wv~~Fn~yDLYSK~------------------ky~P~~l~W  278 (278)
                      ||+||++||||||||||                  ||||++|+|
T Consensus       246 ~l~wv~~Fn~yDLYSKs~~~pdve~lkpYY~~LidKY~P~~l~W  289 (289)
T 2huo_A          246 MLPWVQEFNKFDLYTKCPDLPDVESLRPYYQGLIDKYCPGTLSW  289 (289)
T ss_dssp             HHHHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHHSCSCEEC
T ss_pred             HHHHHHHhCcccccccCCCCCCHHHHHHHHHHHHHHHCCcccCC
Confidence            99999999999999999                  999999999

PyMOL of 2huo

>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4	Back alignment and structure

>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}	Back alignment and structure

>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}	Back alignment and structure

>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}	Back alignment and structure

>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}	Back alignment and structure

>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A	Back alignment and structure

>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}	Back alignment and structure

>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1	Back alignment and structure

>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1	Back alignment and structure

>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0	Back alignment and structure

>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1	Back alignment and structure

>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1	Back alignment and structure

>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1	Back alignment and structure

>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		278
d2ibna1		249	a.211.1.4 (A:37-285) Myo-inositol oxygenase MioX {	1e-115

>d2ibna1 a.211.1.4 (A:37-285) Myo-inositol oxygenase MioX {Human (Homo sapiens) [TaxId: 9606]} Length = 249	Back information, alignment and structure


class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: MioX-like
domain: Myo-inositol oxygenase MioX
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  329 bits (845), Expect = e-115
 Identities = 108/249 (43%), Positives = 143/249 (57%), Gaps = 22/249 (8%)

Query: 49  VQECYRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKNYVDESDPDLDEPQIDHL 108
           V   Y+  H +QT +F   K  ++G     +M++ E  +LL   VDESDPD+D P   H 
Sbjct: 4   VFTTYKLMHTHQTVDFVRSKHAQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHA 63

Query: 109 LQTAEAIRRDHPHEYWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVH 168
            QTAE IR+ HP + W  L  L+HDLGKVL   A   E QW VVGDTFP+GC    ++V 
Sbjct: 64  FQTAEGIRKAHPDKDWFHLVGLLHDLGKVL---ALFGEPQWAVVGDTFPVGCRPQASVVF 120

Query: 169 HQF-FKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVAKGNNTTLPPAGLFI 227
               F++NPD ++P ++T+LG+Y  + GLD + MSWGHDEYMY V K N  +LPP   ++
Sbjct: 121 CDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWGHDEYMYQVMKFNKFSLPPEAFYM 180

Query: 228 IRFHSFYAMHRHGAYTFLMNDEDKEMLKWLQVFNKYDLYSKS------------------ 269
           IRFHSFY  H    Y  L + +D  ML W++ FNK+DLY+K                   
Sbjct: 181 IRFHSFYPWHTGRDYQQLCSQQDLAMLPWVREFNKFDLYTKCPDLPDVDKLRPYYQGLID 240

Query: 270 KYFPEKLKW 278
           KY P  L W
Sbjct: 241 KYCPGILSW 249

PyMOL of d2ibna1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		278
d2ibna1		249	Myo-inositol oxygenase MioX {Human (Homo sapiens)	100.0
d3b57a1		201	Uncharacterized protein Lin1889 {Listeria innocua	84.01
d3dtoa1		212	Uncharacterized protein BH2835 {Bacillus haloduran	82.66

>d2ibna1 a.211.1.4 (A:37-285) Myo-inositol oxygenase MioX {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: MioX-like
domain: Myo-inositol oxygenase MioX
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-130  Score=883.98  Aligned_cols=229  Identities=47%  Similarity=0.889  Sum_probs=219.4

Q ss_pred             HHHHHHHHHhhhhccHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHhhCCCCCchh
Q 035614           47 AIVQECYRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDHPHEYWLQ  126 (278)
Q Consensus        47 ~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~q  126 (278)
                      +||++|||+||++||||||++||++|++|++++||||||+++||+|||+||||+|+|||+||||||||||++||+|||||
T Consensus         2 drV~~~Y~~~h~~QT~dfv~~~~~~~~~~~~~~mti~eale~Ln~lvD~SDPD~~lpn~~H~~QTAE~iR~~~~~~dW~q   81 (249)
T d2ibna1           2 DRVFTTYKLMHTHQTVDFVRSKHAQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFH   81 (249)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcCCcceeEHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHHHHhCCCcchHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccccccccCCCCCCceeeecCeeeeecccCCcccccc-ccccCCCCCCccCCCCCCcccCCCCccccccccCc
Q 035614          127 LTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQ-FFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGH  205 (278)
Q Consensus       127 LtGLiHDLGKvl~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e-~F~~NPD~~~p~YnT~~GiY~~~CGLdnV~mSWGH  205 (278)
                      ||||||||||||++  | |+|||+||||||||||+|+++|||++ +|++|||..||+|||++|||+||||||||+|||||
T Consensus        82 L~GLiHDLGKvl~~--~-ge~qW~vVGDTf~vGC~~~~~iv~~e~~f~~NpD~~~~~yntk~GiY~~~CGLdNv~~SWGH  158 (249)
T d2ibna1          82 LVGLLHDLGKVLAL--F-GEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWGH  158 (249)
T ss_dssp             HHHHHTTGGGHHHH--T-TCCGGGTSSCCCBSSSCCCTTSTTHHHHCTTCGGGGCTTTSSSSTTCCTTCCGGGSCBCCSH
T ss_pred             hhhhhhhhHHHhHh--c-CCCceeeecccceecccCCccccccccccccCccccCCccCCcccccCCCCCccceeeeccc
Confidence            99999999999998  5 79999999999999999999999998 69999999999999999999999999999999999


Q ss_pred             chhHHHHHhcCCCCCCccchhhhhccccccccccccccccCChhhHHHHHHHHHcCCccccccc----------------
Q 035614          206 DEYMYLVAKGNNTTLPPAGLFIIRFHSFYAMHRHGAYTFLMNDEDKEMLKWLQVFNKYDLYSKS----------------  269 (278)
Q Consensus       206 DEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~~l~wv~~Fn~yDLYSK~----------------  269 (278)
                      |||||+|||+|+++||+|||+|||||||||||++|+|+||||++|.+||+||++|||||||||+                
T Consensus       159 DEYLY~Vlk~N~~~LP~eal~mIRyHSfYpwH~~~~Y~~l~n~~D~~ml~~V~~FN~yDLYSK~d~~pd~~~lkpYY~~L  238 (249)
T d2ibna1         159 DEYMYQVMKFNKFSLPPEAFYMIRFHSFYPWHTGRDYQQLCSQQDLAMLPWVREFNKFDLYTKCPDLPDVDKLRPYYQGL  238 (249)
T ss_dssp             HHHHHHHHHHHTCCCCHHHHHHHHHTTCHHHHTTCCCTTTCCHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHH
T ss_pred             hHHHHHHHhcCCCcCCHHHHHHHHhhccccccCcchHHHHhChhHHHHHHHHHhcCccccccCCCCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             --ccCCCCCCC
Q 035614          270 --KYFPEKLKW  278 (278)
Q Consensus       270 --ky~P~~l~W  278 (278)
                        ||||++|+|
T Consensus       239 idKY~pg~L~W  249 (249)
T d2ibna1         239 IDKYCPGILSW  249 (249)
T ss_dssp             HHHHSCSCEEC
T ss_pred             HHHHCCCCcCC
Confidence              999999999

PyMOL of d2ibna1

>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]}	Back information, alignment and structure

>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure