Citrus Sinensis ID: 035615

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MLCYQTNLYACILSEYQNWLKQLIKQKSIAKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHWES
Secondary Structure (PSIPRED)
ccccccEEEEEEcccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccccccEEEEEcccHHHHHHHHHHcccccEEEEccccccccccccccccHHHHHHHccEEEEEccccccccccccHHHHHHccccEEEEEccccccccHHHHHHHHHcccccccccccccccccccccccccccEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHcEEEEEEcEccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEcccEEEEEcccHHHHHHHHHHHHcccEEEEEcccccHHHcccEEccHHHHHHHccEEEEcccccccccccEcHHHHHHccccEEEEEcccHHHEcHHHHHHHHHHccEEEEEEccccccccccccccccccEEEccccccccHHcc
Coil and Loop (DISEMBL)
MLCYQTNLYACILSEYQNWLKQLIKQKSiakqadlpiVADLAIGLLIDFLrrispgnwyvraglwaktgdyplgfklggMQVGIVRLGNIGSEVLNRLQAFGFIIsynsrrkrpsvlfpycanvydlavNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGdingvgldvfendpnvpkeplrldnivllpcqnalthwes
Flexible Loop (DISEMBL)
MLCYQTNLYACILSEYQNWLKQLIKQKSIAKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQnalthwes
Low Complexity Region (SEG)
MLCYQTNLYACILSEYQNWLKQLIKQKSIAKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHWES
Disordered region (IsUnstruct)
*LCYQTNLYACILSEYQNWLKQLIKQKSIAKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW**
Disordered Region (DISOPRED)
MLCYQTNLYACILSEYQNWLKQLIKQKSIAKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQ*A******
Disordered Region (DISEMBL)
MLCYQTNLYACILSEYQNWLKQLIKQKSIAKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHWES
Disordered Region (DISPRO)
MLCYQTNLYACILSEYQNWLKQLIKQKSIAKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQN*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLCYQTNLYACILSEYQNWLKQLIKQKSIAKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHWES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
Q9LE33	323	Glyoxylate/hydroxypyruvat	yes	no	0.789	0.544	0.590	3e-54
Q9CA90	313	Glyoxylate/hydroxypyruvat	no	no	0.784	0.559	0.494	2e-39
B6YWH0	334	Glyoxylate reductase OS=T	yes	no	0.820	0.547	0.350	5e-26
P53839	350	Glyoxylate reductase 1 OS	yes	no	0.789	0.502	0.368	2e-23
Q9C4M5	331	Glyoxylate reductase OS=T	N/A	no	0.762	0.513	0.348	4e-23
Q8U3Y2	336	Glyoxylate reductase OS=P	no	no	0.816	0.541	0.315	1e-22
A6TFG7	323	Glyoxylate/hydroxypyruvat	yes	no	0.820	0.566	0.338	2e-22
B5XMZ4	323	Glyoxylate/hydroxypyruvat	no	no	0.820	0.566	0.338	2e-22
P58000	323	Glyoxylate/hydroxypyruvat	N/A	no	0.914	0.631	0.328	5e-22
Q9YAW4	335	Glyoxylate reductase OS=A	yes	no	0.820	0.546	0.333	6e-22

>sp|Q9LE33|HPR3_ARATH Glyoxylate/hydroxypyruvate reductase HPR3 OS=Arabidopsis thaliana GN=HPR3 PE=2 SV=1

 Score =  211 bits (538), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 104/176 (59%), Positives = 135/176 (76%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VAD A+GLLI  LRRI   + YVR+G WAK GD+ LG K+ G +VGIV LG+IGS V  R
Sbjct: 111 VADCAVGLLISVLRRIPAADRYVRSGNWAKFGDFQLGSKVSGKRVGIVGLGSIGSFVAKR 170

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
           L++FG +ISYNSR ++ S  + Y +++  LA N+DVLV+CC+LT++THHI+N++VM  LG
Sbjct: 171 LESFGCVISYNSRSQKQSSPYRYYSDILSLAENNDVLVLCCSLTDETHHIVNREVMELLG 230

Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
           K G++INVGRG LIDEKEM++ LV G I G GLDVFEN+P VP+E   LDN+VL P
Sbjct: 231 KDGVVINVGRGKLIDEKEMVKCLVDGVIGGAGLDVFENEPAVPQELFGLDNVVLSP 286

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate. Mostly active in the presence of NADPH and glyoxylate.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 1

>sp|Q9CA90|HPR2_ARATH Glyoxylate/hydroxypyruvate reductase A HPR2 OS=Arabidopsis thaliana GN=HPR2 PE=1 SV=1

 Score =  162 bits (409), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/176 (49%), Positives = 120/176 (68%), Gaps = 1/176 (0%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VADLAIGL++  LRR+   + YVR+G W K G++ L  K  G  VGI+ LG IG+ +  R
Sbjct: 104 VADLAIGLILALLRRLCECDRYVRSGKW-KQGEFQLTTKFSGKSVGIIGLGRIGTAIAKR 162

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
            +AF   I+Y SR  +P V + Y   V DLA NSD+LVV C LTEQT HI+++ VM  LG
Sbjct: 163 AEAFSCPINYYSRTIKPDVAYKYYPTVVDLAQNSDILVVACPLTEQTRHIVDRQVMDALG 222

Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
             G++IN+GRG  +DE+E+++ L +G + G  LDVFE +P+VP+E   L+N+VLLP
Sbjct: 223 AKGVLINIGRGPHVDEQELIKALTEGRLGGAALDVFEQEPHVPEELFGLENVVLLP 278

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate in the cytoplasm, thus providing a cytosolic bypass to the photorespiratory core cycle. Mostly active in the presence of NADPH and hydroxypyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1

 Score =  117 bits (294), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 108/191 (56%), Gaps = 8/191 (4%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGD--YPL---GFKLGGMQVGIVRLGNIGS 92
            AD+A  LL+   RR+   + +VR+G W K G   +PL   G+ + G  +GIV  G IG 
Sbjct: 104 TADMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQ 163

Query: 93  EVLNRLQAFGFIISYNSRRKRPSVLFPYCANVY---DLAVNSDVLVVCCALTEQTHHIIN 149
            +  R + FG  I YNSR ++P V     A      +L   SD +V+   LT++T+H+IN
Sbjct: 164 AIARRAKGFGMRILYNSRTRKPEVEKELGAEFMPLDELLKESDFVVLVVPLTKETYHMIN 223

Query: 150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNI 209
           ++ +  +    +++N+ RG ++D + +++ L +G I G GLDVFE +P   +E   LDN+
Sbjct: 224 EERLKLMKPTAILVNIARGKVVDTEALVKALREGWIAGAGLDVFEEEPYYHEELFSLDNV 283

Query: 210 VLLPCQNALTH 220
           VL P   + T+
Sbjct: 284 VLAPHIGSATY 294

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|P53839|GOR1_YEAST Glyoxylate reductase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GOR1 PE=1 SV=1

 Score =  109 bits (272), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 95/182 (52%), Gaps = 6/182 (3%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGD---YPLGFKLGGMQVGIVRLGNIGSEV 94
            AD  + LL+  LR    GN  +  G W + G     P G+   G  VGI+ LG IG  +
Sbjct: 119 TADTHVFLLLGALRNFGIGNRRLIEGNWPEAGPACGSPFGYDPEGKTVGILGLGRIGRCI 178

Query: 95  LNRLQAFGFI-ISYNSRRKRPSVLFPYCANV--YDLAVNSDVLVVCCALTEQTHHIINKD 151
           L RL+ FGF    Y++R + PS     C  V   +    SD++ V   L   THH+IN +
Sbjct: 179 LERLKPFGFENFIYHNRHQLPSEEEHGCEYVGFEEFLKRSDIVSVNVPLNHNTHHLINAE 238

Query: 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVL 211
            + ++  G +I+N  RGA+IDE+ M   L  G I   GLDVFE +P + KE L +  ++ 
Sbjct: 239 TIEKMKDGVVIVNTARGAVIDEQAMTDALRSGKIRSAGLDVFEYEPKISKELLSMSQVLG 298

Query: 212 LP 213
           LP
Sbjct: 299 LP 300

Reversibly reduces glyoxylate to glycolate.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1

 Score =  108 bits (269), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 95/178 (53%), Gaps = 8/178 (4%)

Query: 51  RRISPGNWYVRAGLWAKT--GDYPL---GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFII 105
           RRI   + +VR+G W K+  G +PL   G+ L G  +GIV  G IG  +  R + FG  I
Sbjct: 117 RRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAKRAKGFGMKI 176

Query: 106 SYNSRRKRPSVLFPYCANVYDLAV---NSDVLVVCCALTEQTHHIINKDVMAELGKGGMI 162
            Y SR ++P       A   D       SD + +   LT++T+H+I +  +  +    ++
Sbjct: 177 IYYSRTRKPEAEEEIGAEYVDFETLLKESDFISLHVPLTKETYHMIGEKELKLMKPNAIL 236

Query: 163 INVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTH 220
           IN  RGA++D   +++ L +G I G GLDVFE +P   +E  +L N+VL P   + TH
Sbjct: 237 INTSRGAVVDTNALIKALKEGWIAGAGLDVFEEEPYYNEELFKLKNVVLAPHIGSATH 294

Thermococcus litoralis (taxid: 2265)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 102/190 (53%), Gaps = 8/190 (4%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTG-----DYPLGFKLGGMQVGIVRLGNIGS 92
            AD A  LL+   R +  G+ +VR+G W + G      + LG++L G  +GIV  G IG 
Sbjct: 104 TADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVGFGRIGQ 163

Query: 93  EVLNRLQAFGFIISYNSRRKRPSVLFPYCAN---VYDLAVNSDVLVVCCALTEQTHHIIN 149
            +  R + F   I Y SR ++        A    + ++   SD +++   LT++T ++IN
Sbjct: 164 AIARRAKGFNMRILYYSRTRKSQAEKELGAEYRPLEEVLKESDFVILAVPLTKETMYMIN 223

Query: 150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNI 209
           ++ +  +    +++N+ RG ++D K +++ L +G I G GLDVFE +P   +E   LDN+
Sbjct: 224 EERLKLMKPTAILVNIARGKVVDTKALIKALKEGWIAGAGLDVFEEEPYYNEELFSLDNV 283

Query: 210 VLLPCQNALT 219
           VL P   + T
Sbjct: 284 VLTPHIGSAT 293

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A6TFG7|GHRB_KLEP7 Glyoxylate/hydroxypyruvate reductase B OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=ghrB PE=3 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 98/189 (51%), Gaps = 6/189 (3%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKT-GDYPLGFKLGGMQVGIVRLGNIGSEVLN 96
           VAD  + L++   RR+      V+AG W K+ G    G  +    +GIV +G IG  +  
Sbjct: 103 VADTVMALVLSTARRVVEVAERVKAGEWTKSIGPDWFGTDVHHKTLGIVGMGRIGMALAQ 162

Query: 97  RLQ-AFGFIISYNSRRKRPSVLFPYCANVYDLAV---NSDVLVVCCALTEQTHHIINKDV 152
           R    FG  I YN+RR+ P     + A   DL      +D + +   L+E+THH+  +  
Sbjct: 163 RAHFGFGMPILYNARRQHPQAEERFNARYCDLDTLLQEADFVCLILPLSEETHHLFGQAQ 222

Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEP-LRLDNIVL 211
            A++    + IN GRG ++DE+ ++  L  G+I+  GLDVFE++P     P L L N+V 
Sbjct: 223 FAKMKSSAIFINAGRGPVVDEQALIAALQNGEIHAAGLDVFEHEPLAKDSPLLSLPNVVA 282

Query: 212 LPCQNALTH 220
           LP   + TH
Sbjct: 283 LPHIGSATH 291

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) (taxid: 272620)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|B5XMZ4|GHRB_KLEP3 Glyoxylate/hydroxypyruvate reductase B OS=Klebsiella pneumoniae (strain 342) GN=ghrB PE=3 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 98/189 (51%), Gaps = 6/189 (3%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKT-GDYPLGFKLGGMQVGIVRLGNIGSEVLN 96
           VAD  + L++   RR+      V+AG W K+ G    G  +    +GIV +G IG  +  
Sbjct: 103 VADTVMALVLSTARRVVEVAERVKAGEWTKSIGPDWFGSDVHHKTLGIVGMGRIGMALAQ 162

Query: 97  RLQ-AFGFIISYNSRRKRPSVLFPYCANVYDLAV---NSDVLVVCCALTEQTHHIINKDV 152
           R    FG  I YN+RR+ P     + A   DL      +D + +   L+E+THH+  +  
Sbjct: 163 RAHFGFGMPILYNARRQHPQAEERFNARYCDLDTLLQEADFVCLILPLSEETHHLFGQAQ 222

Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEP-LRLDNIVL 211
            A++    + IN GRG ++DE+ ++  L  G+I+  GLDVFE++P     P L L N+V 
Sbjct: 223 FAKMKSSAIFINAGRGPVVDEQALIAALQAGEIHAAGLDVFEHEPLAKDSPLLTLPNVVA 282

Query: 212 LPCQNALTH 220
           LP   + TH
Sbjct: 283 LPHIGSATH 291

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Klebsiella pneumoniae (strain 342) (taxid: 507522)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|P58000|GHRB_ENTAG Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter agglomerans GN=tkrA PE=1 SV=1

 Score =  104 bits (260), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 109/216 (50%), Gaps = 12/216 (5%)

Query: 16  YQNWLKQLIKQKSIAKQADLPIV-----ADLAIGLLIDFLRRISPGNWYVRAGLWAKT-G 69
           Y N+  + + Q+ I    D P V     AD  + L++   RR+      V+AG W ++ G
Sbjct: 76  YDNFDVEALNQRGIV-LIDTPTVLTETVADTMMALVLSSARRVVEVAERVKAGEWRRSIG 134

Query: 70  DYPLGFKLGGMQVGIVRLGNIGSEVLNRLQ-AFGFIISYNSRRKRPSVLFPYCANVYDLA 128
               G  +   ++GI+ +G IG  +  R    FG  I YN+R+        + A   DL 
Sbjct: 135 PDWFGIDVHHKKMGILGMGRIGLALAQRAHHGFGMPILYNARKHHEEAESRFNAQYCDLD 194

Query: 129 V---NSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDI 185
                SD L +   LTEQTHH+I ++ +A++    ++IN GRG ++DE+ ++  L    I
Sbjct: 195 TLLRESDFLCISLPLTEQTHHMIGREQLAKMKPSAILINAGRGPVVDEQALIAALKDKTI 254

Query: 186 NGVGLDVFENDP-NVPKEPLRLDNIVLLPCQNALTH 220
           +  GLDVFE +P  V  E L L N+V LP   + TH
Sbjct: 255 HAAGLDVFEQEPLPVDSELLTLPNVVALPHIGSATH 290

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Enterobacter agglomerans (taxid: 549)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=gyaR PE=3 SV=2

 Score =  104 bits (259), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 103/192 (53%), Gaps = 9/192 (4%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLW--AKTGDYP---LGFKLGGMQVGIVRLGNIGS 92
            A+    L++   RR+   + +VR G W   +TG +P   LG +L G  +GI+ +G IGS
Sbjct: 105 TAEFTWALILAAARRVVEADHFVRWGEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGS 164

Query: 93  EVLNRLQAFGFIISYNSRRKRPSV---LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN 149
            V    +AFG  I Y+SR ++  +   L     ++ DL   SD+L +   LT++T H+I 
Sbjct: 165 RVAEIGKAFGMRIIYHSRSRKREIEKELGAEYRSLEDLLRESDILSIHLPLTDETRHLIG 224

Query: 150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR-LDN 208
           +  +  + K  +++N GRGA++D   +++ L +G I    LDVFE +P  P  PL    N
Sbjct: 225 ESELKLMKKTAILVNTGRGAIVDTGALVKALREGWIAAAALDVFEEEPLNPNHPLTAFKN 284

Query: 209 IVLLPCQNALTH 220
           +VL P   + T 
Sbjct: 285 VVLAPHAASATR 296

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
255537211	322	glycerate dehydrogenase, putative [Ricin	0.838	0.580	0.652	5e-65
225426720	334	PREDICTED: glyoxylate reductase-like [Vi	0.829	0.553	0.661	9e-64
225426718	314	PREDICTED: glyoxylate reductase [Vitis v	0.825	0.585	0.654	2e-62
317106634	333	JHL05D22.11 [Jatropha curcas]	0.816	0.546	0.631	4e-60
224058629	344	predicted protein [Populus trichocarpa]	0.816	0.529	0.637	5e-60
317106635	331	JHL05D22.12 [Jatropha curcas]	0.816	0.549	0.604	3e-59
224127466	331	predicted protein [Populus trichocarpa]	0.789	0.531	0.619	6e-59
224071666	332	predicted protein [Populus trichocarpa]	0.816	0.548	0.631	7e-59
359489392	341	PREDICTED: glyoxylate reductase isoform	0.816	0.533	0.593	8e-58
255541390	333	glycerate dehydrogenase, putative [Ricin	0.789	0.528	0.625	9e-58

>gi|255537211|ref|XP_002509672.1| glycerate dehydrogenase, putative [Ricinus communis] gi|223549571|gb|EEF51059.1| glycerate dehydrogenase, putative [Ricinus communis]

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 124/190 (65%), Positives = 148/190 (77%), Gaps = 3/190 (1%)

Query: 24  IKQKSIAKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVG 83
           I   S+A   D   VAD A+ LLID LRRIS  + +VR+GLW   GDYPLGFKLGG +VG
Sbjct: 99  ITNASVAFAED---VADQAVALLIDVLRRISAADRFVRSGLWPMKGDYPLGFKLGGKRVG 155

Query: 84  IVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQ 143
           IV  G+IGSEV  RL+AFG  I+YNSRRK+PSV FPY ANV DLA  SD+L++CC+LTE+
Sbjct: 156 IVGFGSIGSEVAKRLEAFGCRIAYNSRRKKPSVPFPYYANVLDLAAESDILILCCSLTEE 215

Query: 144 THHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEP 203
           THH+IN +VM  LG+ G+IINVGRG+LIDEKE++QFLVQG I G GLDVFEN+P VPKE 
Sbjct: 216 THHLINGNVMKTLGREGVIINVGRGSLIDEKELVQFLVQGKIGGAGLDVFENEPYVPKEL 275

Query: 204 LRLDNIVLLP 213
             LDN+VL P
Sbjct: 276 FSLDNVVLSP 285

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426720|ref|XP_002282078.1| PREDICTED: glyoxylate reductase-like [Vitis vinifera]

 Score =  248 bits (634), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 123/186 (66%), Positives = 150/186 (80%), Gaps = 1/186 (0%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VAD A+ LL+D LR+IS G+ Y+R+GLW+  GDYPLG+KLGG +VGIV LGNIGSEV  R
Sbjct: 125 VADYAVALLMDVLRKISAGDRYLRSGLWSTKGDYPLGWKLGGKRVGIVGLGNIGSEVAKR 184

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
           L AFG  I+YNSR+KR SV FPY A+V DLA NSD+LV+C ALT +THHIINKDVM  LG
Sbjct: 185 LVAFGCAIAYNSRKKRSSVSFPYYADVCDLAANSDILVICGALTSETHHIINKDVMTALG 244

Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNA 217
           K G+IINVGRG+LI++KE++QFLV+G I G GLDVFEN+P VP+E L LDN+VL P  NA
Sbjct: 245 KEGVIINVGRGSLINQKELVQFLVEGQIRGAGLDVFENEPIVPRELLELDNVVLSP-HNA 303

Query: 218 LTHWES 223
           +   E+
Sbjct: 304 VVTPEA 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426718|ref|XP_002281980.1| PREDICTED: glyoxylate reductase [Vitis vinifera]

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/185 (65%), Positives = 144/185 (77%), Gaps = 1/185 (0%)

Query: 39  ADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRL 98
           AD AIGLLID LRRIS  + YVRAGLW   GDYPLG KLGG +VGIV LG IGSE+  RL
Sbjct: 103 ADFAIGLLIDVLRRISAADRYVRAGLWPMKGDYPLGSKLGGKRVGIVGLGKIGSEIAKRL 162

Query: 99  QAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGK 158
            AFG  I+YNSR K+ SV FPY AN+ +LA NSD+L++CCALT++THH+I+KDVM  LGK
Sbjct: 163 VAFGCRIAYNSRNKKSSVSFPYYANICNLAANSDILIICCALTKETHHLIDKDVMTALGK 222

Query: 159 GGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNAL 218
            G+IINVGRG LI+EKE++Q LVQG I G GLDVFEN+P+VPKE   L+N+VL P   A+
Sbjct: 223 EGVIINVGRGGLINEKELVQCLVQGQIRGAGLDVFENEPDVPKELFELENVVLSP-HKAI 281

Query: 219 THWES 223
              ES
Sbjct: 282 ATLES 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106634|dbj|BAJ53140.1| JHL05D22.11 [Jatropha curcas]

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 115/182 (63%), Positives = 145/182 (79%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VAD+A+GLLID +R+IS  + YVR   W   GD PLG KL G QVGIV LGNIG EV  R
Sbjct: 121 VADIAVGLLIDVIRKISASDRYVRQDSWPIKGDSPLGSKLRGRQVGIVGLGNIGLEVAKR 180

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
           L+AFG  I YNSR+K+PSV++PY +NV +LA N +VL++CC L++QTHH+INK+V++ELG
Sbjct: 181 LEAFGCNILYNSRKKKPSVIYPYYSNVCELAANCNVLIICCGLSKQTHHLINKEVLSELG 240

Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNA 217
           K G+IINVGRGA+IDE+EM+Q L+QG I G GLDVFEN+PNVPKE + LDN+VL P + A
Sbjct: 241 KDGVIINVGRGAIIDEQEMVQCLMQGTIAGAGLDVFENEPNVPKELVELDNVVLSPHRAA 300

Query: 218 LT 219
            T
Sbjct: 301 HT 302

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058629|ref|XP_002299574.1| predicted protein [Populus trichocarpa] gi|222846832|gb|EEE84379.1| predicted protein [Populus trichocarpa]

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 116/182 (63%), Positives = 139/182 (76%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
            AD A+ LLID  RRIS  + ++ AGLW   GDYPL  KL G +VGIV LG+IG EV  R
Sbjct: 132 AADYAVALLIDVWRRISAADRFLHAGLWPVKGDYPLASKLRGKRVGIVGLGSIGFEVSKR 191

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
           L+AFG  I+YNSR ++PSV FPY ANV DLA +SD LV+CC+LTEQT HIINKDVM  LG
Sbjct: 192 LEAFGCSIAYNSRMEKPSVPFPYYANVLDLAAHSDALVLCCSLTEQTRHIINKDVMTALG 251

Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNA 217
           K G+IINVGRG LIDEKE++QFL++GDI G GLDVFEN+P+VP+E   LDN+VL P +  
Sbjct: 252 KKGVIINVGRGGLIDEKELVQFLLRGDIGGAGLDVFENEPDVPRELFELDNVVLSPHRAV 311

Query: 218 LT 219
            T
Sbjct: 312 AT 313

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106635|dbj|BAJ53141.1| JHL05D22.12 [Jatropha curcas]

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/182 (60%), Positives = 140/182 (76%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VADLA+GLLID LR+IS  + YVR GLWA  GDYPLG KL G + GIV LG IG EV  R
Sbjct: 119 VADLAVGLLIDVLRKISASDRYVRQGLWATKGDYPLGAKLSGKRAGIVGLGRIGYEVAKR 178

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
           L+AFG  ISYNSR+K+P+V +P+  NV +LA N D L++CC LT+QT H+INK+V++ LG
Sbjct: 179 LEAFGCYISYNSRKKKPNVSYPFYQNVSELAANCDALIICCGLTKQTFHMINKEVLSALG 238

Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNA 217
           K G+I+N+GRGA+IDEKEM++ LV G+I G GLDVFEN+P+VPKE   ++N+VL P    
Sbjct: 239 KKGVIVNIGRGAIIDEKEMVRCLVAGEIAGAGLDVFENEPDVPKEFFTMENVVLSPHTAV 298

Query: 218 LT 219
            T
Sbjct: 299 FT 300

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127466|ref|XP_002320081.1| predicted protein [Populus trichocarpa] gi|222860854|gb|EEE98396.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 109/176 (61%), Positives = 140/176 (79%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VAD A+GLLID LR++S  + YVR GLWA  GDYPLG KLGG ++GIV LGNIG  V  R
Sbjct: 120 VADFAVGLLIDVLRKVSASDGYVRKGLWATKGDYPLGSKLGGKRIGIVGLGNIGFAVAKR 179

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
           L+AFG  ISYNSR+++P V +P+  +V +LA N DVLV+CC LT+QT H+INK+V++ LG
Sbjct: 180 LEAFGCSISYNSRKRKPHVSYPFYESVCELAANCDVLVICCELTDQTRHMINKEVLSALG 239

Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
           K G+I+N+GRGA+I+EKEM+Q LVQG+I G GLDVFEN+P+VP E   +DN+VL P
Sbjct: 240 KEGVIVNIGRGAIINEKEMVQCLVQGEIAGAGLDVFENEPDVPVELFAMDNVVLSP 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071666|ref|XP_002303552.1| predicted protein [Populus trichocarpa] gi|222840984|gb|EEE78531.1| predicted protein [Populus trichocarpa]

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 115/182 (63%), Positives = 139/182 (76%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
            AD A+ LLID  RRIS  + +VRAGLW    D  LGFK+G  +VGIV LG IG EV  R
Sbjct: 120 AADHAVALLIDVCRRISTADRFVRAGLWPVKRDCSLGFKMGRKRVGIVGLGRIGFEVGKR 179

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
           L+AFG  I+YNSR+K+PSV F Y ANV DLA +SD L++CC+LTEQTHHIINKDV+  LG
Sbjct: 180 LEAFGCSIAYNSRKKKPSVPFSYHANVLDLAEDSDALILCCSLTEQTHHIINKDVLEALG 239

Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNA 217
           K G+IINVGRGALIDEK ++QFL++GDI G GLDVFEN+P+VP+E   LDN+VL P +  
Sbjct: 240 KEGVIINVGRGALIDEKVLVQFLLRGDIGGAGLDVFENEPDVPRELFELDNVVLSPHRAI 299

Query: 218 LT 219
            T
Sbjct: 300 FT 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489392|ref|XP_003633919.1| PREDICTED: glyoxylate reductase isoform 1 [Vitis vinifera]

 Score =  229 bits (583), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 108/182 (59%), Positives = 142/182 (78%)

Query: 39  ADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRL 98
           AD+ +GL ID L++IS G+ +VR+GLW    D+PLG KLGG +VGIV LG+IG EV  RL
Sbjct: 130 ADMGVGLFIDVLKKISAGDRFVRSGLWPIQKDFPLGSKLGGKRVGIVGLGSIGLEVAKRL 189

Query: 99  QAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGK 158
           +AFG II YNSRRK+ ++ +P+ +NV +LA NS+ L++CCALT++T H+INK+VM  LGK
Sbjct: 190 EAFGCIILYNSRRKKANISYPFYSNVCELAANSNALIICCALTDETRHMINKEVMKALGK 249

Query: 159 GGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNAL 218
            G+IIN+GRGA+IDEKE++Q LVQG+I G GLDVFEN+P+VPKE   LDN+VL P     
Sbjct: 250 EGVIINIGRGAIIDEKELVQCLVQGEIGGAGLDVFENEPDVPKELFTLDNVVLSPHVAVF 309

Query: 219 TH 220
           T 
Sbjct: 310 TQ 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541390|ref|XP_002511759.1| glycerate dehydrogenase, putative [Ricinus communis] gi|223548939|gb|EEF50428.1| glycerate dehydrogenase, putative [Ricinus communis]

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 110/176 (62%), Positives = 136/176 (77%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VADL +GL ID LR+IS  + YVR G W   GD+PLGFKL G QVGIV LG+IG EV  R
Sbjct: 119 VADLTVGLFIDVLRKISASDQYVRQGSWPTKGDFPLGFKLRGRQVGIVGLGSIGLEVAKR 178

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
           ++AFG  I YNSR K+PSV +PY +NV +LA N DVL++CC LT+QT H+INK+V   LG
Sbjct: 179 VEAFGCKIMYNSRNKKPSVPYPYYSNVCELAANCDVLIICCGLTDQTRHMINKEVFEALG 238

Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
           K G+I+NVGRG +IDE+EM+Q LVQG+I G GLDVFEN+P+VPKE   L+N+VL P
Sbjct: 239 KEGVIVNVGRGVIIDEQEMVQRLVQGEIAGAGLDVFENEPHVPKELTVLNNVVLSP 294

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
TAIR|locus:2034665	323	HPR3 "hydroxypyruvate reductas	0.789	0.544	0.590	2.4e-51
TAIR|locus:2043684	338	AT2G45630 [Arabidopsis thalian	0.789	0.520	0.553	1.1e-48
TAIR|locus:2017824	313	AT1G79870 [Arabidopsis thalian	0.784	0.559	0.494	1.4e-41
TIGR_CMR|SPO_2422	313	SPO_2422 "D-isomer specific 2-	0.811	0.578	0.390	4.5e-27
UNIPROTKB|Q483F8	311	CPS_2082 "Putative glyoxylate	0.834	0.598	0.352	1.1e-25
TIGR_CMR|CPS_2082	311	CPS_2082 "putative glyoxylate	0.834	0.598	0.352	1.1e-25
CGD|CAL0006135	342	GOR1 [Candida albicans (taxid:	0.843	0.549	0.321	2.6e-24
SGD|S000005218	350	GOR1 "Glyoxylate reductase" [S	0.784	0.5	0.370	2.3e-23
CGD|CAL0005418	345	IFM3 [Candida albicans (taxid:	0.802	0.518	0.364	6.1e-23
UNIPROTKB|Q5A2T9	345	IFM3 "Potential D-isomer speci	0.802	0.518	0.364	6.1e-23

TAIR|locus:2034665 HPR3 "hydroxypyruvate reductase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 104/176 (59%), Positives = 135/176 (76%)

Query:    38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
             VAD A+GLLI  LRRI   + YVR+G WAK GD+ LG K+ G +VGIV LG+IGS V  R
Sbjct:   111 VADCAVGLLISVLRRIPAADRYVRSGNWAKFGDFQLGSKVSGKRVGIVGLGSIGSFVAKR 170

Query:    98 LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
             L++FG +ISYNSR ++ S  + Y +++  LA N+DVLV+CC+LT++THHI+N++VM  LG
Sbjct:   171 LESFGCVISYNSRSQKQSSPYRYYSDILSLAENNDVLVLCCSLTDETHHIVNREVMELLG 230

Query:   158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
             K G++INVGRG LIDEKEM++ LV G I G GLDVFEN+P VP+E   LDN+VL P
Sbjct:   231 KDGVVINVGRGKLIDEKEMVKCLVDGVIGGAGLDVFENEPAVPQELFGLDNVVLSP 286

GO:0005737 "cytoplasm" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0009853 "photorespiration" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

TAIR|locus:2043684 AT2G45630 [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 98/177 (55%), Positives = 130/177 (73%)

Query:    38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
             VAD A+GLLID  RRIS  N +V+   W   GDYPLG KLG  ++GIV LG+IGS+V  R
Sbjct:   127 VADTAVGLLIDVFRRISAANRFVKQRFWPLKGDYPLGSKLGRKRIGIVGLGSIGSKVATR 186

Query:    98 LQAFGFIISYNSRRKRP-SVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
             L AFG  ISY+SR ++P  V + Y  ++ ++A NSD L++CC L E+T  +INKDV++ L
Sbjct:   187 LDAFGCQISYSSRNRKPYDVPYHYYMDIEEMAANSDALIICCELNEKTLRLINKDVLSAL 246

Query:   157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
             GK G+I+NV RGA+IDE+EM++ L +G+I G GLDVFE++PNVPKE   LDN+V  P
Sbjct:   247 GKRGVIVNVARGAIIDEEEMVRCLREGEIGGAGLDVFEDEPNVPKELFELDNVVFSP 303

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA;ISS

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2017824 AT1G79870 [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 87/176 (49%), Positives = 120/176 (68%)

Query:    38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
             VADLAIGL++  LRR+   + YVR+G W K G++ L  K  G  VGI+ LG IG+ +  R
Sbjct:   104 VADLAIGLILALLRRLCECDRYVRSGKW-KQGEFQLTTKFSGKSVGIIGLGRIGTAIAKR 162

Query:    98 LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
              +AF   I+Y SR  +P V + Y   V DLA NSD+LVV C LTEQT HI+++ VM  LG
Sbjct:   163 AEAFSCPINYYSRTIKPDVAYKYYPTVVDLAQNSDILVVACPLTEQTRHIVDRQVMDALG 222

Query:   158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
               G++IN+GRG  +DE+E+++ L +G + G  LDVFE +P+VP+E   L+N+VLLP
Sbjct:   223 AKGVLINIGRGPHVDEQELIKALTEGRLGGAALDVFEQEPHVPEELFGLENVVLLP 278

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0009854 "oxidative photosynthetic carbon pathway" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TIGR_CMR|SPO_2422 SPO_2422 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 71/182 (39%), Positives = 104/182 (57%)

Query:    38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
             VADLA+ +L+   RR+  G  +VR G W +T ++PL  K  G   G+V LG IG E+ +R
Sbjct:   102 VADLAVTMLLMQCRRMEQGGAWVREGHW-ETANFPLNRKASGGVAGVVGLGRIGREIADR 160

Query:    98 LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
             L AF   I Y +R ++ +  + Y A+   LA   D LVV      +T   I+++V+  LG
Sbjct:   161 LAAFKMDIHYFARSEKDTPGWTYHADPVSLAKAVDFLVVALVGGPETEKFISREVIEALG 220

Query:   158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNA 217
               G+++N+ RG+ IDE  +L  L +G I G  LDVF N+P +    L L N+VL P Q +
Sbjct:   221 PRGVVVNISRGSTIDETALLDALERGRIAGAALDVFLNEPTIDPRFLALSNVVLQPHQGS 280

Query:   218 LT 219
              T
Sbjct:   281 GT 282

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|Q483F8 CPS_2082 "Putative glyoxylate reductase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 69/196 (35%), Positives = 107/196 (54%)

Query:    27 KSIAKQADLPIV----ADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYP-LGFKLGGMQ 81
             K IA   + P+V    ADLA  L++   R+++    ++R G W+ T     LG  + G +
Sbjct:    82 KGIAV-TNTPVVTEDTADLAFSLILAASRQLTANEKFLRNGQWSATNPIGCLGKTVHGAK 140

Query:    82 VGIVRLGNIGSEVLNRLQAFGFIISYNS-RRK---RPSVLFPYCANVYDLAVNSDVLVVC 137
             +GI+  G IG  V  R +AF   I Y+  RRK     S+   Y  N+ D+   SD++ + 
Sbjct:   141 LGIIGFGEIGQAVARRAKAFNMEIFYHGPRRKIDAEVSLEAVYFENLTDMLAASDIISIN 200

Query:   138 CALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP 197
             C L E THH+IN D +A +    +++N GRG LIDE  ++  + +G +   GLDVFE++P
Sbjct:   201 CPLNENTHHLINADTIATMRPDAILVNTGRGPLIDESALVGAMKKGHLFAAGLDVFEHEP 260

Query:   198 NVPKEPLRLDNIVLLP 213
              +  + L L N+ L P
Sbjct:   261 EIHDQLLTLPNVTLTP 276

GO:0008152 "metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|CPS_2082 CPS_2082 "putative glyoxylate reductase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 69/196 (35%), Positives = 107/196 (54%)

Query:    27 KSIAKQADLPIV----ADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYP-LGFKLGGMQ 81
             K IA   + P+V    ADLA  L++   R+++    ++R G W+ T     LG  + G +
Sbjct:    82 KGIAV-TNTPVVTEDTADLAFSLILAASRQLTANEKFLRNGQWSATNPIGCLGKTVHGAK 140

Query:    82 VGIVRLGNIGSEVLNRLQAFGFIISYNS-RRK---RPSVLFPYCANVYDLAVNSDVLVVC 137
             +GI+  G IG  V  R +AF   I Y+  RRK     S+   Y  N+ D+   SD++ + 
Sbjct:   141 LGIIGFGEIGQAVARRAKAFNMEIFYHGPRRKIDAEVSLEAVYFENLTDMLAASDIISIN 200

Query:   138 CALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP 197
             C L E THH+IN D +A +    +++N GRG LIDE  ++  + +G +   GLDVFE++P
Sbjct:   201 CPLNENTHHLINADTIATMRPDAILVNTGRGPLIDESALVGAMKKGHLFAAGLDVFEHEP 260

Query:   198 NVPKEPLRLDNIVLLP 213
              +  + L L N+ L P
Sbjct:   261 EIHDQLLTLPNVTLTP 276

GO:0008152 "metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

CGD|CAL0006135 GOR1 [Candida albicans (taxid:5476)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 64/199 (32%), Positives = 109/199 (54%)

Query:    24 IKQKSIAKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDY-----PLGFKLG 78
             ++  ++ +  + P  AD+A+ L++  +R    G   +  G W   GD      PLG    
Sbjct:   105 VQVSNVTEPVERP-TADVAVFLVLACMRNFLQGRQILMNGEWPSNGDKEAAGAPLGHTPQ 163

Query:    79 GMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSVL--FPYCANVYDLAVNSDVL 134
             G  VGI+ +G IG  + +RL+ FGF  I+ YN ++  P +     Y   + +L   SDV+
Sbjct:   164 GKVVGILGMGGIGRAIRDRLKPFGFDGIVYYNRKQLSPELEKGAEY-VTMDELFKQSDVI 222

Query:   135 VVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE 194
             ++   L  +T H+I+K+ + ++  G +++N+ RGA+IDEK + + +  G I   G DVFE
Sbjct:   223 IIGVPLNAKTRHLIDKEAIQKMKDGVVLVNIARGAIIDEKHLPELIKSGKIGAFGADVFE 282

Query:   195 NDPNVPKEPLRLDNIVLLP 213
             ++P V  E + L N+V LP
Sbjct:   283 HEPEVSAELVNLPNVVALP 301

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0047964 "glyoxylate reductase activity" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=IEA

SGD|S000005218 GOR1 "Glyoxylate reductase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 67/181 (37%), Positives = 95/181 (52%)

Query:    39 ADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDY---PLGFKLGGMQVGIVRLGNIGSEVL 95
             AD  + LL+  LR    GN  +  G W + G     P G+   G  VGI+ LG IG  +L
Sbjct:   120 ADTHVFLLLGALRNFGIGNRRLIEGNWPEAGPACGSPFGYDPEGKTVGILGLGRIGRCIL 179

Query:    96 NRLQAFGFI-ISYNSRRKRPSVLFPYCANV--YDLAVNSDVLVVCCALTEQTHHIINKDV 152
              RL+ FGF    Y++R + PS     C  V   +    SD++ V   L   THH+IN + 
Sbjct:   180 ERLKPFGFENFIYHNRHQLPSEEEHGCEYVGFEEFLKRSDIVSVNVPLNHNTHHLINAET 239

Query:   153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLL 212
             + ++  G +I+N  RGA+IDE+ M   L  G I   GLDVFE +P + KE L +  ++ L
Sbjct:   240 IEKMKDGVVIVNTARGAVIDEQAMTDALRSGKIRSAGLDVFEYEPKISKELLSMSQVLGL 299

Query:   213 P 213
             P
Sbjct:   300 P 300

GO:0047964 "glyoxylate reductase activity" evidence=IEA;IMP

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0009436 "glyoxylate catabolic process" evidence=IMP

GO:0048037 "cofactor binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0051287 "NAD binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

CGD|CAL0005418 IFM3 [Candida albicans (taxid:5476)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 67/184 (36%), Positives = 97/184 (52%)

Query:    42 AIGLLIDFLRRISPGNWYVRAGLW--AKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQ 99
             A+ L++  LR    G+  +  G W   K G   LG    G  VGI+ +G IG  + +RL+
Sbjct:   121 AVFLVLSCLRNYQEGHQILYDGGWDSKKCGGAKLGHSPEGKVVGILGMGGIGRAIRDRLK 180

Query:   100 AFGFI-ISYNSRRKRPSVLFPYCANVY--DLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
              FGF  I Y++R+   S L      V   DL   +D++ +   L   T H INK+ ++++
Sbjct:   181 PFGFTKILYHNRKPLSSDLEGGAEYVSKEDLFKQADIICISVPLNAHTKHSINKEAISQM 240

Query:   157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQN 216
               G ++IN  RGA+IDEKE+ + L  G I   G DVFE +P V  E  RL N+V LP   
Sbjct:   241 KDGVILINTARGAVIDEKELPELLKSGKIGAFGADVFEKEPEVSPELYRLPNVVSLPHMG 300

Query:   217 ALTH 220
               T+
Sbjct:   301 THTY 304

GO:0005575 "cellular_component" evidence=ND

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

UNIPROTKB|Q5A2T9 IFM3 "Potential D-isomer specific 2-hydroxyacid dehydrogenase" [Candida albicans SC5314 (taxid:237561)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 67/184 (36%), Positives = 97/184 (52%)

Query:    42 AIGLLIDFLRRISPGNWYVRAGLW--AKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQ 99
             A+ L++  LR    G+  +  G W   K G   LG    G  VGI+ +G IG  + +RL+
Sbjct:   121 AVFLVLSCLRNYQEGHQILYDGGWDSKKCGGAKLGHSPEGKVVGILGMGGIGRAIRDRLK 180

Query:   100 AFGFI-ISYNSRRKRPSVLFPYCANVY--DLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
              FGF  I Y++R+   S L      V   DL   +D++ +   L   T H INK+ ++++
Sbjct:   181 PFGFTKILYHNRKPLSSDLEGGAEYVSKEDLFKQADIICISVPLNAHTKHSINKEAISQM 240

Query:   157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQN 216
               G ++IN  RGA+IDEKE+ + L  G I   G DVFE +P V  E  RL N+V LP   
Sbjct:   241 KDGVILINTARGAVIDEKELPELLKSGKIGAFGADVFEKEPEVSPELYRLPNVVSLPHMG 300

Query:   217 ALTH 220
               T+
Sbjct:   301 THTY 304

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	4e-84
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	8e-55
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	1e-49
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	2e-49
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	6e-49
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	7e-46
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	2e-43
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	2e-42
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	7e-42
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	8e-41
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	5e-36
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	2e-35
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	2e-35
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	2e-34
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	5e-33
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	7e-33
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	1e-32
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	4e-32
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	7e-32
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	2e-30
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	6e-29
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	2e-28
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	6e-28
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	1e-27
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	2e-27
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	2e-27
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	5e-27
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	8e-26
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	1e-25
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	9e-25
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	1e-24
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	3e-24
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	9e-24
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	6e-23
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	9e-23
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	2e-22
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	2e-22
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	2e-22
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	3e-21
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	7e-21
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	9e-21
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	9e-21
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	5e-20
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	2e-19
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	6e-19
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	8e-19
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	9e-19
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	7e-18
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	4e-16
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	5e-16
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	6e-15
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	1e-14
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	2e-14
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	5e-10
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	5e-10
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	1e-09
PRK15469	312	PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr	3e-09
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	1e-08
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	7e-08
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	2e-05
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	5e-04

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  251 bits (644), Expect = 4e-84
 Identities = 89/183 (48%), Positives = 121/183 (66%), Gaps = 1/183 (0%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VADLA+GLL+  LRRI   + +VRAG W K G +PL  K+ G +VGIV LG IG  +  R
Sbjct: 101 VADLAVGLLLAVLRRIPAADRFVRAGRWPK-GAFPLTRKVSGKRVGIVGLGRIGRAIARR 159

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
           L+AFG  I+Y+ RR +P V + Y A++ +LA  SDVLVV C     T H++N +V+  LG
Sbjct: 160 LEAFGMEIAYHGRRPKPDVPYRYYASLLELAAESDVLVVACPGGPATRHLVNAEVLEALG 219

Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNA 217
             G+++NV RG+++DE  ++  L +G I G GLDVFEN+PNVP   L LDN+VL P   +
Sbjct: 220 PDGVLVNVARGSVVDEAALIAALQEGRIAGAGLDVFENEPNVPAALLDLDNVVLTPHIAS 279

Query: 218 LTH 220
            T 
Sbjct: 280 ATV 282

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  177 bits (451), Expect = 8e-55
 Identities = 75/192 (39%), Positives = 106/192 (55%), Gaps = 9/192 (4%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTG--DYPLGFKLGGMQVGIVRLGNIGSEVL 95
           VA+ A+ L++   RRI  G+  VR G W+ +G  D  LGF L G  +GI+ LG IG  V 
Sbjct: 103 VAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVA 162

Query: 96  NRLQAFGFIISYNSRRKRPSVLFPYCANVYD---LAVNSDVLVVCCALTEQTHHIINKDV 152
            RL+ FG  + Y  R   P       A   D   L   SD++ + C LT +T H+IN + 
Sbjct: 163 RRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEE 222

Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-RLDN--- 208
           +A++  G +++N  RG L+DE+ ++  L  G I G GLDVFEN+P +   PL RLDN   
Sbjct: 223 LAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPN 282

Query: 209 IVLLPCQNALTH 220
           +VL P   + T 
Sbjct: 283 VVLTPHIASATE 294

Length = 324

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  159 bits (405), Expect = 1e-49
 Identities = 67/174 (38%), Positives = 95/174 (54%), Gaps = 5/174 (2%)

Query: 43  IGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFG 102
           + LL+   RRI   +  VRAG W    D  LG +L G  VGI+ LG IG  V  RL+AFG
Sbjct: 1   LALLLALARRIPEADRQVRAGRWRP--DALLGRELSGKTVGIIGLGRIGRAVARRLKAFG 58

Query: 103 F-IISYN-SRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGG 160
             +I+Y+   +     L     ++ +L   SDV+ +   LT +T H+IN + +A +  G 
Sbjct: 59  MKVIAYDRYPKAEAEALGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGA 118

Query: 161 MIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR-LDNIVLLP 213
           ++IN  RG L+DE  ++  L  G I G  LDVFE +P  P  PL  L N++L P
Sbjct: 119 ILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNVILTP 172

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  163 bits (415), Expect = 2e-49
 Identities = 71/183 (38%), Positives = 101/183 (55%), Gaps = 9/183 (4%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYP---LGFKLGGMQVGIVRLGNIGSEV 94
            ADLA  LL+   RR+  G+ +VRAG W   G  P   LG  L G  +GIV +G IG  V
Sbjct: 102 TADLAFALLLAAARRVVEGDRFVRAGEW--KGWSPTLLLGTDLHGKTLGIVGMGRIGQAV 159

Query: 95  LNRLQAFGFIISYNSRRKRPSV---LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD 151
             R + FG  I Y++R ++P     L     ++ +L   SD + + C LT +T H+IN +
Sbjct: 160 ARRAKGFGMKILYHNRSRKPEAEEELGARYVSLDELLAESDFVSLHCPLTPETRHLINAE 219

Query: 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR-LDNIV 210
            +A +    ++IN  RG ++DE  +++ L  G I G GLDVFE +P     PL  L N+V
Sbjct: 220 RLALMKPTAILINTARGGVVDEDALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPNVV 279

Query: 211 LLP 213
           LLP
Sbjct: 280 LLP 282

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  162 bits (412), Expect = 6e-49
 Identities = 66/180 (36%), Positives = 93/180 (51%), Gaps = 4/180 (2%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
            AD A+ L++  LR  S      RAG W    D  L     G  +GI+ LG IG  +  +
Sbjct: 113 TADTALFLILGALRNFSRAERSARAGKWRGFLDLTLAHDPRGKTLGILGLGGIGKAIARK 172

Query: 98  LQAFGF-IISYNSRRKRPSVLFP---YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153
             AFG  II +N  R    +      Y  ++ +L   SDV+ + C LT  T H+INK   
Sbjct: 173 AAAFGMKIIYHNRSRLPEELEKALATYYVSLDELLAQSDVVSLNCPLTAATRHLINKKEF 232

Query: 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
           A++  G +I+N  RGA+IDE  ++  L  G +   GLDVFEN+P V    L++ N+ LLP
Sbjct: 233 AKMKDGVIIVNTARGAVIDEDALVDALESGKVASAGLDVFENEPEVNPGLLKMPNVTLLP 292

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  153 bits (390), Expect = 7e-46
 Identities = 71/181 (39%), Positives = 102/181 (56%), Gaps = 7/181 (3%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+ A+GLL+  LRR+   +  VR G       +P G++L G  VGIV LG IG  V  R
Sbjct: 100 VAEHALGLLLALLRRLPRADAAVRRGWGWLWAGFP-GYELEGKTVGIVGLGRIGQRVAKR 158

Query: 98  LQAFGFIISYNSRRKRPSV----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153
           LQAFG  + Y  R ++P       F   + + +L   SDV+V+   LT +T H+IN++ +
Sbjct: 159 LQAFGMKVLYYDRTRKPEPEEDLGFRVVS-LDELLAQSDVVVLHLPLTPETRHLINEEEL 217

Query: 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-RLDNIVLL 212
           A +  G +++N  RG L+DE  +L+ L  G I G  LDVFE +P     PL  L N++L 
Sbjct: 218 ALMKPGAVLVNTARGGLVDEDALLRALKSGKIAGAALDVFEPEPLPADHPLLELPNVILT 277

Query: 213 P 213
           P
Sbjct: 278 P 278

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  147 bits (374), Expect = 2e-43
 Identities = 63/181 (34%), Positives = 94/181 (51%), Gaps = 7/181 (3%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+L + LL+   RRI   +   R G W +   +  G +L G  VGI+ LG IG  V  R
Sbjct: 103 VAELVLALLLALARRIPDADASQRRGEWDRK-AFR-GTELAGKTVGIIGLGRIGRAVAKR 160

Query: 98  LQAFGF-IISYNSRRKRPSVLFPYC---ANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153
           L+AFG  +I Y+    R            ++ +L   +D+L +   LT +T  +IN + +
Sbjct: 161 LKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEEL 220

Query: 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-RLDNIVLL 212
           A++  G ++IN  RG ++DE  +L  L  G I G  LDVFE +P     PL  L N++L 
Sbjct: 221 AKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILT 280

Query: 213 P 213
           P
Sbjct: 281 P 281

Length = 324

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  144 bits (367), Expect = 2e-42
 Identities = 62/190 (32%), Positives = 95/190 (50%), Gaps = 25/190 (13%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VAD A+ L++   R++   +  VRAG W  T   P+  +L G+ +G+V  G IG  V  R
Sbjct: 102 VADHALALILALARKLPFLDRAVRAGGWDWTVGGPIR-RLRGLTLGLVGFGRIGRAVAKR 160

Query: 98  LQAFGF-IISYNSRRKRPSVLFPYCANVY------------DLAVNSDVLVVCCALTEQT 144
            +AFGF +I+Y+          PY  +              +L   SDV+ + C LT +T
Sbjct: 161 AKAFGFRVIAYD----------PYVPDGVAALGGVRVVSLDELLARSDVVSLHCPLTPET 210

Query: 145 HHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL 204
            H+I+ + +A +  G  ++N  RG L+DE  + + L  G I G  LDV E +P     PL
Sbjct: 211 RHLIDAEALALMKPGAFLVNTARGGLVDEAALARALKSGRIAGAALDVLEEEPPPADSPL 270

Query: 205 R-LDNIVLLP 213
               N++L P
Sbjct: 271 LSAPNVILTP 280

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  143 bits (364), Expect = 7e-42
 Identities = 61/181 (33%), Positives = 94/181 (51%), Gaps = 7/181 (3%)

Query: 39  ADLAIGLLIDFLRRISPGNWYVRAGLWAKTGD-YPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           A+L  GL++   RRI+ G+  +R G +      + LG +L G  +GI+ +G IG  V  R
Sbjct: 103 AELTFGLILALARRIAEGDRLMRRGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARR 162

Query: 98  LQAFGFIISYNSRRKRPSVL-----FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152
            +AFG  I Y +R +            Y  ++ +L   SD + +    T +THH+I+   
Sbjct: 163 AKAFGMKILYYNRHRLSEETEKELGATYV-DLDELLKESDFVSLHAPYTPETHHLIDAAA 221

Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLL 212
              +     +IN  RG L+DEK ++  L  G+I G  LDVFE +P V  E  +LDN++L 
Sbjct: 222 FKLMKPTAYLINAARGPLVDEKALVDALKTGEIAGAALDVFEFEPEVSPELKKLDNVILT 281

Query: 213 P 213
           P
Sbjct: 282 P 282

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  141 bits (357), Expect = 8e-41
 Identities = 67/181 (37%), Positives = 99/181 (54%), Gaps = 6/181 (3%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+ A+ L++  LRR+   +  +RAG W +  +     +L G  VGIV LGNIG  V  R
Sbjct: 102 VAEHAVMLMLALLRRLPEADRELRAGRWGRP-EGRPSRELSGKTVGIVGLGNIGRAVARR 160

Query: 98  LQAFGF-IISYNSRRKRPSVLFPYCANV---YDLAVNSDVLVVCCALTEQTHHIINKDVM 153
           L+ FG  +I Y+  R   +             +L   SDV+ +   LT +T H+I  + +
Sbjct: 161 LRGFGVEVIYYDRFRDPEAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHLIGAEEL 220

Query: 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-RLDNIVLL 212
           A +  G ++IN  RG L+DE+ +L  L  G + G GLDVF  +P  P +PL RLDN++L 
Sbjct: 221 AAMKPGAILINTARGGLVDEEALLAALRSGHLAGAGLDVFWQEPLPPDDPLLRLDNVILT 280

Query: 213 P 213
           P
Sbjct: 281 P 281

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  128 bits (324), Expect = 5e-36
 Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 8/183 (4%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAK--TGDYPLGFKLGGMQVGIVRLGNIGSEVL 95
           VA+  +GL++   R I+  +  ++ G W K        G +L G  VGIV  G IG  V 
Sbjct: 104 VAEFTVGLMLAETRNIARAHAALKDGEWRKDYYNYDGYGPELRGKTVGIVGFGAIGRRVA 163

Query: 96  NRLQAFGF-IISYNSRRKRPSVLFPYCANVY--DLAVNSDVLVVCCALTEQTHHIINKDV 152
            RL+AFG  ++ Y+       +       V   +L   SDV+ +   LT +T  +I  + 
Sbjct: 164 KRLKAFGAEVLVYDPYVDPEKIEADGVKKVSLEELLKRSDVVSLHARLTPETRGMIGAEE 223

Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEP--LRLDNIV 210
            A +      IN  R  L+DE  +++ L +G I G  LDVF  +P +P +   L+LDN+ 
Sbjct: 224 FALMKPTAYFINTARAGLVDEDALIEALEEGKIGGAALDVFPEEP-LPADHPLLKLDNVT 282

Query: 211 LLP 213
           L P
Sbjct: 283 LTP 285

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  126 bits (320), Expect = 2e-35
 Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 6/180 (3%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+  I L++   R I   +  +RAG W +   +  G +L G  +GIV LG IG EV  R
Sbjct: 99  VAEHTIALMLALARNIPQADASLRAGKWDR-KKFM-GVELRGKTLGIVGLGRIGREVARR 156

Query: 98  LQAFGF-IISYNS--RRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA 154
            +AFG  +++Y+     +R +       ++ +L   +D + +   LT +T  +IN + +A
Sbjct: 157 ARAFGMKVLAYDPYISAERAAAGGVELVSLDELLAEADFISLHTPLTPETRGLINAEELA 216

Query: 155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR-LDNIVLLP 213
           ++  G ++IN  RG ++DE  +   L  G I G  LDVFE +P     PL  L N++L P
Sbjct: 217 KMKPGAILINTARGGIVDEAALADALKSGKIAGAALDVFEQEPPPADSPLLGLPNVILTP 276

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  126 bits (319), Expect = 2e-35
 Identities = 62/180 (34%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+L IGL++   R+I   +  VRAG W +    P+G +L G  +GI+ LG IG  V  R
Sbjct: 105 VAELTIGLMLALARQIPQADREVRAGGWDR----PVGTELYGKTLGIIGLGRIGKAVARR 160

Query: 98  LQAFGFIISYNSRRKRPSVLFPY---CANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA 154
           L  FG  +              +     ++ +L   SD + +   LT +T H+IN   +A
Sbjct: 161 LSGFGMKVLAYDPYPDEEFAKEHGVEFVSLEELLKESDFISLHLPLTPETRHLINAAELA 220

Query: 155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR-LDNIVLLP 213
            +  G ++IN  RG L+DE+ + + L  G I G  LDVFE +P     PL  L N++L P
Sbjct: 221 LMKPGAILINTARGGLVDEEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTP 280

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  124 bits (314), Expect = 2e-34
 Identities = 64/191 (33%), Positives = 102/191 (53%), Gaps = 10/191 (5%)

Query: 39  ADLAIGLLIDFLRRISPGNWYVRAGLWAKTGD--YP---LGFKLGGMQVGIVRLGNIGSE 93
           AD A  LL+   RR+   + +VR+G W + G   +P   LG+ + G  +GI+  G IG  
Sbjct: 105 ADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQA 164

Query: 94  VLNRLQAFGFIISYNSRRKRPSV---LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150
           V  R + FG  I Y SR ++P     L      + +L   SD + +   LT++T+H+IN+
Sbjct: 165 VARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINE 224

Query: 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-RLDNI 209
           + +  +    +++N  RG ++D K +++ L +G I G GLDVFE +P    E L  L N+
Sbjct: 225 ERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEP-YYNEELFSLKNV 283

Query: 210 VLLPCQNALTH 220
           VL P   + T 
Sbjct: 284 VLAPHIGSATF 294

Length = 333

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  120 bits (303), Expect = 5e-33
 Identities = 65/179 (36%), Positives = 94/179 (52%), Gaps = 5/179 (2%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+L IGL++   R I   N  ++ G W K   Y  G +L G  +GI+  G IG EV   
Sbjct: 100 VAELVIGLMLSLARFIHRANREMKLGKWNK-KKY-KGIELRGKTLGIIGFGRIGREVAKI 157

Query: 98  LQAFGF-IISYNSRRKRPSVLFPYCANVY--DLAVNSDVLVVCCALTEQTHHIINKDVMA 154
            +A G  +I+Y+   K    +      V   +L  NSD + +   LT +T H+INK  + 
Sbjct: 158 ARALGMNVIAYDPYPKDEQAVELGVKTVSLEELLKNSDFISLHVPLTPETKHMINKKELE 217

Query: 155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
            +  G +IIN  RG +IDE+ +L+ L  G + G  LDVFEN+P    + L L N+ L P
Sbjct: 218 LMKDGAIIINTSRGGVIDEEALLEALKSGKLAGAALDVFENEPPPGSKLLELPNVSLTP 276

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  120 bits (303), Expect = 7e-33
 Identities = 62/180 (34%), Positives = 99/180 (55%), Gaps = 7/180 (3%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+L IGL ID LR I P +  VRAG    T    +G +L G  VGIV  G IG  V   
Sbjct: 106 VAELTIGLAIDLLRNIVPCDAAVRAG---GTKAGLIGRELAGKTVGIVGTGAIGLRVARL 162

Query: 98  LQAFGF-IISYN-SRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE 155
            +AFG  +++Y+ S ++    L     ++ +L   SD++ +   L ++T  +I K+ +A 
Sbjct: 163 FKAFGCKVLAYSRSEKEEAKALGIEYVSLDELLAESDIVSLHLPLNDETKGLIGKEKLAL 222

Query: 156 LGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKE-PLR-LDNIVLLP 213
           + +  ++IN  RG ++D + +   L +G I G G+DVF+ +P +P + PL    N +L P
Sbjct: 223 MKESAILINTARGPVVDNEALADALNEGKIAGAGIDVFDMEPPLPADYPLLHAPNTILTP 282

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  119 bits (300), Expect = 1e-32
 Identities = 56/189 (29%), Positives = 96/189 (50%), Gaps = 11/189 (5%)

Query: 36  PIVADLAIGLLIDFLRRISPGNWYVRAGLWAK-TGDYPLGFKLGGMQVGIVRLGNIGSEV 94
           P VA+ A+ L++   +RI   +  +R G+W    G+ P   +L G  VGI+  G+IG E+
Sbjct: 93  PAVAEHALALILALAKRIVEYDNDLRRGIWHGRAGEEPESKELRGKTVGILGYGHIGREI 152

Query: 95  LNRLQAFGF-IISYNSRRKRPSVLFPYC--ANVYDLAVNSDVLVVCCALTEQTHHIINKD 151
              L+AFG  +I  +   K           +++ +    +DV+VV   LT+QT  +I   
Sbjct: 153 ARLLKAFGMRVIGVSRSPKEDEGADFVGTLSDLDEALEQADVVVVALPLTKQTRGLIGAA 212

Query: 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVF--ENDPNVPKEPLR---- 205
            +A +  G +++NVGRG ++DE+ + + L +  I G  +DV+        P  P R    
Sbjct: 213 ELAAMKPGAILVNVGRGPVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFH 272

Query: 206 -LDNIVLLP 213
            L N+++ P
Sbjct: 273 ELPNVIMSP 281

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  121 bits (307), Expect = 4e-32
 Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 29/191 (15%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
            A+  I L++   R I   +  ++AG W +   + +G +L G  +GI+ LG IGSEV  R
Sbjct: 101 AAEHTIALMLALARNIPQAHASLKAGKWER-KKF-MGVELYGKTLGIIGLGRIGSEVAKR 158

Query: 98  LQAFGF-IISYNSRRKRPSVLFPYC------------ANVYDLAVNSDVLVVCCALTEQT 144
            +AFG  +I+Y+          PY              ++ +L   +D + +   LT +T
Sbjct: 159 AKAFGMKVIAYD----------PYISPERAAQLGVELVSLDELLARADFITLHTPLTPET 208

Query: 145 HHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKE-P 203
             +I  + +A++  G  IIN  RG +IDE  + + L  G + G  LDVFE +P  P + P
Sbjct: 209 RGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEP--PTDSP 266

Query: 204 LR-LDNIVLLP 213
           L  L N+V+ P
Sbjct: 267 LFELPNVVVTP 277

Length = 526

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  117 bits (296), Expect = 7e-32
 Identities = 63/190 (33%), Positives = 104/190 (54%), Gaps = 10/190 (5%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+ A+ L++  LR+I+  +  V+ G W +  ++ +G +L G  VGI+  GNIGS V   
Sbjct: 107 VAEHAVALILTVLRKINQASEAVKEGKWTERANF-VGHELSGKTVGIIGYGNIGSRV-AE 164

Query: 98  LQAFGF---IISYNSRRKRPSVLFPYCANVYD---LAVNSDVLVVCCALTEQTHHIINKD 151
           +   GF   +++Y        V+    A       L   SD++ +   LTE+T+H+IN+ 
Sbjct: 165 ILKEGFNAKVLAY-DPYVSEEVIKKKGAKPVSLEELLAESDIISLHAPLTEETYHMINEK 223

Query: 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEP-LRLDNIV 210
             +++ KG +++N  RG LIDE+ +++ L  G I G GLDV E +P     P L  +N+V
Sbjct: 224 AFSKMKKGVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEPIKADHPLLHYENVV 283

Query: 211 LLPCQNALTH 220
           + P   A T+
Sbjct: 284 ITPHIGAYTY 293

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  113 bits (285), Expect = 2e-30
 Identities = 63/186 (33%), Positives = 97/186 (52%), Gaps = 13/186 (6%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTG-----DYPLGFKLGGMQVGIVRLGNIGS 92
           VA     LL+   R ++  N  V+AG W K+      DYP+  +L G  +GI+  GNIG 
Sbjct: 102 VAQHTFALLLALARLVAYHNDVVKAGEWQKSPDFCFWDYPII-ELAGKTLGIIGYGNIGQ 160

Query: 93  EVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152
            V    +AFG  + +  R+  P +   Y  ++ +L   SDV+ + C LT +T ++IN + 
Sbjct: 161 AVARIARAFGMKVLFAERKGAPPLREGY-VSLDELLAQSDVISLHCPLTPETRNLINAEE 219

Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLL 212
           +A++  G ++IN  RG L+DE+ +   L  G I G GLDV        +EP R DN +L 
Sbjct: 220 LAKMKPGAILINTARGGLVDEQALADALNSGKIAGAGLDVL------SQEPPRADNPLLK 273

Query: 213 PCQNAL 218
              N +
Sbjct: 274 AAPNLI 279

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  109 bits (276), Expect = 6e-29
 Identities = 62/189 (32%), Positives = 97/189 (51%), Gaps = 20/189 (10%)

Query: 36  PIVADLAIGLLIDFLRRISPGNWYVR---AGLWAKTGDYPLGFKLGGMQVGIVRLGNIGS 92
           P +A+  +G ++ F R++     Y R      W + G      +L G  V IV LG+IG 
Sbjct: 94  PPIAEYVLGYMLAFARKL---PRYARNQAERRWQRRGPV---RELAGKTVLIVGLGDIGR 147

Query: 93  EVLNRLQAFGFIISYNSRRKRPSVLFPYCANVY------DLAVNSDVLVVCCALTEQTHH 146
           E+  R +AFG  +    R  RP+   P    VY      +L   +D +V    LT +T  
Sbjct: 148 EIARRAKAFGMRVIGVRRSGRPAP--PVVDEVYTPDELDELLPEADYVVNALPLTPETRG 205

Query: 147 IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKE-PL- 204
           + N +  A +  G ++INVGRG+++DE  +++ L  G I G  LDVFE +P +P + PL 
Sbjct: 206 LFNAERFAAMKPGAVLINVGRGSVVDEDALIEALESGRIAGAALDVFEEEP-LPADSPLW 264

Query: 205 RLDNIVLLP 213
            L N+++ P
Sbjct: 265 DLPNVIITP 273

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  111 bits (280), Expect = 2e-28
 Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 6/186 (3%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
            A+ A+ +L+   R I   +  ++ G W +      G +L G  +G++ LG IGS V  R
Sbjct: 99  AAEHALAMLLAAARNIPQADASLKEGEWDRKAFM--GTELYGKTLGVIGLGRIGSIVAKR 156

Query: 98  LQAFGF-IISYN---SRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153
            +AFG  +++Y+   S  +   +      ++ +L   +D + V   LT +T  +I  + +
Sbjct: 157 AKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEEL 216

Query: 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
           A++ KG +I+N  RG +IDE  + + L +G +    LDVFE +P        LDN++  P
Sbjct: 217 AKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATP 276

Query: 214 CQNALT 219
              A T
Sbjct: 277 HLGAST 282

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  107 bits (269), Expect = 6e-28
 Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 20/193 (10%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+  I L++  LR         R           +G +L    VG+V  G IG  V  R
Sbjct: 104 VAEHTIALILALLRNR--KYIDERDKNQDLQDAGVIGRELEDQTVGVVGTGKIGRAVAQR 161

Query: 98  LQAFGF-IISYNSRRKR--PSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA 154
            + FG  +I+Y+  R          Y  ++ +L  NSD++ +   LT + HH+IN++   
Sbjct: 162 AKGFGMKVIAYDPFRNPELEDKGVKY-VSLEELFKNSDIISLHVPLTPENHHMINEEAFK 220

Query: 155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEN-------------DPNVPK 201
            + KG +IIN  RG+L+D + +++ L  G I G GLDV E+               +   
Sbjct: 221 LMKKGVIIINTARGSLVDTEALIEALDSGKIFGAGLDVLEDETPDLLKDLEGEIFKDALN 280

Query: 202 EPL-RLDNIVLLP 213
             L R  N+++ P
Sbjct: 281 ALLGRRPNVIITP 293

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  106 bits (267), Expect = 1e-27
 Identities = 47/190 (24%), Positives = 89/190 (46%), Gaps = 20/190 (10%)

Query: 38  VADLAIGLLIDFLRRISPGNWYV--------RAGLWAKTGDYPLGFKLGGMQVGIVRLGN 89
           VA+L I +++   R I     +V          G+      +  G +L G  +G++ LGN
Sbjct: 87  VAELVIAMMLALSRNIIQAIKWVTNGDGDDISKGVEKGKKQFV-GTELRGKTLGVIGLGN 145

Query: 90  IGSEVLNRLQAFGF-IISYN-----SRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQ 143
           IG  V N   A G  +I Y+         + SV      ++ +L   +D + +   LT++
Sbjct: 146 IGRLVANAALALGMKVIGYDPYLSVEAAWKLSVEVQRVTSLEELLATADYITLHVPLTDE 205

Query: 144 THHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEP 203
           T  +IN +++A++  G +++N  RG ++DE+ +L+ L +G + G  +  F     +   P
Sbjct: 206 TRGLINAELLAKMKPGAILLNFARGEIVDEEALLEALDEGKL-GGYVTDFPEPALLGHLP 264

Query: 204 LRLDNIVLLP 213
               N++  P
Sbjct: 265 ----NVIATP 270

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  105 bits (265), Expect = 2e-27
 Identities = 61/189 (32%), Positives = 94/189 (49%), Gaps = 6/189 (3%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKT-GDYPLGFKLGGMQVGIVRLGNIGSEVLN 96
           VAD  + L++   RR+      V+AG W  + G    G  +    +GIV +G IG  +  
Sbjct: 103 VADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQ 162

Query: 97  RLQ-AFGFIISYNSRRKRPSVLFPYCANVYDLAV---NSDVLVVCCALTEQTHHIINKDV 152
           R    F   I YN+RR        + A   DL      SD + +   LT++THH+   + 
Sbjct: 163 RAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQ 222

Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP-NVPKEPLRLDNIVL 211
            A++    + IN GRG ++DE  ++  L +G+I+  GLDVFE +P +V    L L N+V 
Sbjct: 223 FAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVA 282

Query: 212 LPCQNALTH 220
           +P   + TH
Sbjct: 283 VPHIGSATH 291

Length = 323

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  105 bits (265), Expect = 2e-27
 Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 4/161 (2%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
            A+L IGLLI   R I  G+ +VR+G +        G  L G  VGI+ +G +G  +  R
Sbjct: 103 TAELTIGLLIGLGRHILAGDRFVRSGKFGGWRPKFYGTGLDGKTVGILGMGALGRAIARR 162

Query: 98  LQAFGFIISYNSRRKRPSV----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153
           L  FG  + Y             L      + +L  +SD LV+   LT  T H+IN + +
Sbjct: 163 LSGFGATLLYYDPHPLDQAEEQALNLRRVELDELLESSDFLVLALPLTPDTLHLINAEAL 222

Query: 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE 194
           A++  G +++N  RG+++DE  + + L  G + G   DVFE
Sbjct: 223 AKMKPGALLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFE 263

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  104 bits (262), Expect = 5e-27
 Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 19/186 (10%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+ A+ LL+  LR++       RA  W    +  L   L G  V IV  G IG  ++  
Sbjct: 87  VAEHALALLLAGLRQLPA---RARATTWDPAEEDDLVTLLRGSTVAIVGAGGIGRALIPL 143

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLA---VNSDVLVVCCALTEQTHHIINKDVMA 154
           L  FG  +   +R  RP            L     ++D +V+   LT +T H+++   +A
Sbjct: 144 LAPFGAKVIAVNRSGRPVEGADETVPADRLDEVWPDADHVVLAAPLTPETRHLVDAAALA 203

Query: 155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-------RLD 207
            +     ++NV RG L+D   ++  L  G+I G  LDV   DP    EPL        L 
Sbjct: 204 AMKPHAWLVNVARGPLVDTDALVDALRSGEIAGAALDVT--DP----EPLPDGHPLWSLP 257

Query: 208 NIVLLP 213
           N ++ P
Sbjct: 258 NALITP 263

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  101 bits (255), Expect = 8e-26
 Identities = 61/199 (30%), Positives = 82/199 (41%), Gaps = 39/199 (19%)

Query: 36  PIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVL 95
             VA+  +  ++  LRRI       RAG          G  L G  VGIV  G IG  V+
Sbjct: 107 EPVAEFTLAAILLALRRIPRFAAAYRAGRDWGWPTRRGGRGLYGRTVGIVGFGRIGRAVV 166

Query: 96  NRLQAFGFIISYNSRRKRPSVLFPYCANVYD--------------------LAVNSDVLV 135
             L+ FG             VL      VYD                    L   SDV+ 
Sbjct: 167 ELLRPFG-----------LRVL------VYDPYLPAAEAAALGVELVSLDELLARSDVVS 209

Query: 136 VCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEN 195
           +   LT +T  +I+  ++A +  G   IN  RGAL+DE  +L  L  G +    LDV + 
Sbjct: 210 LHAPLTPETRGMIDARLLALMRDGATFINTARGALVDEAALLAELRSGRLRAA-LDVTDP 268

Query: 196 DPNVPKEPLR-LDNIVLLP 213
           +P  P  PLR L N++L P
Sbjct: 269 EPLPPDSPLRTLPNVLLTP 287

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  101 bits (253), Expect = 1e-25
 Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 9/181 (4%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
            A+L   L++   R +   +  +RAG W  T    LG  L G  +GIV LG IG+ V   
Sbjct: 105 TAELTWALILALARNLPEEDAALRAGGWQTT----LGTGLAGKTLGIVGLGRIGARVARI 160

Query: 98  LQAFGF-IISYNSRRKR---PSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153
            QAFG  +I+++S        +       +  +L   SDV+ +   L+++T  ++  + +
Sbjct: 161 GQAFGMRVIAWSSNLTAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDL 220

Query: 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR-LDNIVLL 212
           A +    +++N  RG L+DE  +L  L  G I G  LDVF+ +P     PLR L N++L 
Sbjct: 221 ALMKPTALLVNTSRGPLVDEGALLAALRAGRIAGAALDVFDVEPLPADHPLRGLPNVLLT 280

Query: 213 P 213
           P
Sbjct: 281 P 281

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score = 98.9 bits (247), Expect = 9e-25
 Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 9/183 (4%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+L +GL++   RRI   +  VRAG W K G  P+G +L G  +G++  G IG      
Sbjct: 97  VAELTVGLILALARRIPEADASVRAGDWKKGG--PIGLELYGKTLGVIGGGGIGGIGAAI 154

Query: 98  LQAFGF-IISYNSRRKRPSVLFPYCANV------YDLAVNSDVLVVCCALTEQTHHIINK 150
            +A G  +++Y+               +       DL  + D++ +    T +T HII  
Sbjct: 155 AKALGMGVVAYDPYPNPERAEEGGVEVLLLDLLLLDLKESDDLINLAPPTTMKTGHIIIN 214

Query: 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIV 210
           +    L     I N   G +I+E  +   L +G        V E  P V    L L N++
Sbjct: 215 EARGMLKDAVAINNARGGGVIEEAALDALLEEGIAAAALDVVEEEPPPVNSPLLDLPNVI 274

Query: 211 LLP 213
           L P
Sbjct: 275 LTP 277

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score = 98.0 bits (245), Expect = 1e-24
 Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 10/144 (6%)

Query: 77  LGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYN-SRRKRPSVLFPYC---ANVYDLAVNS 131
           L G  +  +  G+IG E+  RL+AFG  +I  N S R      F  C     + ++   +
Sbjct: 133 LYGKTILFLGTGSIGQEIAKRLKAFGMKVIGVNTSGRDVEY--FDKCYPLEELDEVLKEA 190

Query: 132 DVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD 191
           D++V    LTE+THH+ ++    ++ KG + INVGRG  +DE  +++ L    I G  LD
Sbjct: 191 DIVVNVLPLTEETHHLFDEAFFEQMKKGALFINVGRGPSVDEDALIEALKNKQIRGAALD 250

Query: 192 VFENDPNVPKE-PL-RLDNIVLLP 213
           VFE +P +PK+ PL  LDN+++ P
Sbjct: 251 VFEEEP-LPKDSPLWDLDNVLITP 273

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score = 97.3 bits (243), Expect = 3e-24
 Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 17/174 (9%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYP----LGFKLGGMQVGIVRLGNIGSE 93
           VA+ A  LL+   R++        A    + GD+      GF+L G  +G+V  G IG  
Sbjct: 100 VAEHAFALLLALSRKL------REAIERTRRGDFSQAGLRGFELAGKTLGVVGTGRIGRR 153

Query: 94  VLNRLQAFGF-IISYNSRRKRPSVL----FPYCANVYDLAVNSDVLVVCCALTEQTHHII 148
           V    + FG  +++Y+       +     F Y + + +L   SD++ +    T QTHH+I
Sbjct: 154 VARIARGFGMKVLAYD-VVPDEELAERLGFRYVS-LEELLQESDIISLHVPYTPQTHHLI 211

Query: 149 NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKE 202
           N++  A +  G ++IN  RGA++D + +++ L +G + G GLDV E +  + +E
Sbjct: 212 NRENFALMKPGAVLINTARGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREE 265

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 95.9 bits (239), Expect = 9e-24
 Identities = 58/169 (34%), Positives = 86/169 (50%), Gaps = 13/169 (7%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           +A+  +  ++   +R+ P  W   A  W +    PLG  L G  +GIV  G IG  +  R
Sbjct: 99  IAEFVLAAILAAAKRL-PEIWVKGAEQWRRE---PLG-SLAGSTLGIVGFGAIGQALARR 153

Query: 98  LQAFGFIISYNSRRKRPSVL--FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE 155
             A G  +    R  RPS +      A++ +L   SD LV+   LT +T H+IN DV+A+
Sbjct: 154 ALALGMRVLALRRSGRPSDVPGVEAAADLAELFARSDHLVLAAPLTPETRHLINADVLAQ 213

Query: 156 LGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL 204
              G  +IN+ RG L+D++ +L+ L  G I+   LDV   DP    EPL
Sbjct: 214 AKPGLHLINIARGGLVDQEALLEALDSGRISLASLDV--TDP----EPL 256

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score = 94.0 bits (235), Expect = 6e-23
 Identities = 57/162 (35%), Positives = 90/162 (55%), Gaps = 6/162 (3%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+ A+ LL+   R+I      VR G ++  G   LGF L G  VG++  G IG      
Sbjct: 105 VAEHAVALLLALNRKIHRAYNRVREGNFSLDG--LLGFDLHGKTVGVIGTGKIGQAFARI 162

Query: 98  LQAFGF-IISYNSRRKRP--SVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA 154
           L+ FG  +++Y+         +   Y  ++ +L   SD++ + C LT +THH+IN + +A
Sbjct: 163 LKGFGCRVLAYDPYPNPELAKLGVEYV-DLDELLAESDIISLHCPLTPETHHLINAETIA 221

Query: 155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEND 196
           ++  G M+IN  RG LID K +++ L  G I G+GLDV+E +
Sbjct: 222 KMKDGVMLINTSRGGLIDTKALIEALKSGKIGGLGLDVYEEE 263

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 93.3 bits (233), Expect = 9e-23
 Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 22/164 (13%)

Query: 61  RAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPY 120
           R G+W K             +VG++ LG +G+ V  RL A GF +S  SR  +       
Sbjct: 118 RRGVW-KPLPQRPA---AERRVGVLGLGELGAAVARRLAALGFPVSGWSRSPKD------ 167

Query: 121 CANVY---------DLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALI 171
              V               +D+LV    LT +T  I+N +++A L +G  +INVGRG  +
Sbjct: 168 IEGVTCFHGEEGLDAFLAQTDILVCLLPLTPETRGILNAELLARLPRGAALINVGRGPHL 227

Query: 172 DEKEMLQFLVQGDINGVGLDVFENDPNVPKE-PL-RLDNIVLLP 213
            E ++L  L  G ++G  LDVFE +P +P + PL R   + + P
Sbjct: 228 VEADLLAALDSGHLSGAVLDVFEQEP-LPADHPLWRHPRVTVTP 270

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score = 93.2 bits (232), Expect = 2e-22
 Identities = 55/193 (28%), Positives = 100/193 (51%), Gaps = 23/193 (11%)

Query: 39  ADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRL 98
           A++AI L++  LR+ +     ++  L A+    P+G  L G  V I+  G IG E+  RL
Sbjct: 123 AEMAIYLMLGLLRKQNE----MQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRL 178

Query: 99  QAFGFIISYNSRRKRPSVLFPYCA-----------------NVYDLAVNSDVLVVCCALT 141
           + FG  +   +RR   S                        ++Y+ A  +D++V+CC LT
Sbjct: 179 RPFGVKLLA-TRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLT 237

Query: 142 EQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK 201
           ++T  I+N + ++ + KG +++N+ RG L+D   +L  L  G + G+ +DV  ++P  P 
Sbjct: 238 KETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPD 297

Query: 202 EP-LRLDNIVLLP 213
           +P L+  N+++ P
Sbjct: 298 DPILKHPNVIITP 310

Length = 347

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score = 92.4 bits (230), Expect = 2e-22
 Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 25/185 (13%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTG-----DYPLGFKLGGMQVGIVRLGNIGS 92
           VA     +L+  L RI+  + YV++G ++++        PLG ++ G + GI+ LG IG 
Sbjct: 100 VAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLG-EIKGKKWGIIGLGTIGK 158

Query: 93  EVLNRLQAFGFIISY------NSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHH 146
            V    QAFG  + Y      N   +   V         +L   SD++ +   L E+T +
Sbjct: 159 RVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLE------ELLKTSDIISIHAPLNEKTKN 212

Query: 147 IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRL 206
           +I    +  L  G ++INVGRG +++EK++ + L + DI   GLDV E      KEP+  
Sbjct: 213 LIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDI-YAGLDVLE------KEPMEK 265

Query: 207 DNIVL 211
           ++ +L
Sbjct: 266 NHPLL 270

Length = 311

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score = 92.3 bits (230), Expect = 2e-22
 Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 17/166 (10%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG----GMQVGIVRLGNIGSE 93
           VAD  + L++  LR+                 DY LG   G     + VG++  G IG  
Sbjct: 104 VADYTVMLMLMALRKYKQIMKRAEVN------DYSLGGLQGRELRNLTVGVIGTGRIGQA 157

Query: 94  VLNRLQAFGF-IISYNSRRKRPSVLFPYCANVYDLAV---NSDVLVVCCALTEQTHHIIN 149
           V+  L  FG  I++Y+       V   Y A   DL      SD++ +   LTE+T+H+IN
Sbjct: 158 VIKNLSGFGCKILAYD-PYPNEEVK-KY-AEYVDLDTLYKESDIITLHTPLTEETYHLIN 214

Query: 150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEN 195
           K+ +A++  G +IIN  RG LID + +++ L  G I G  LDV E 
Sbjct: 215 KESIAKMKDGVIIINTARGELIDTEALIEGLESGKIGGAALDVIEG 260

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 89.3 bits (222), Expect = 3e-21
 Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 18/189 (9%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           V + A+G+L+    +++  +  VR G+W + G+   G +L G  VGI+  GN+G     R
Sbjct: 99  VGEHALGMLLALFNKLNRADQEVRNGIWDREGNR--GVELMGKTVGIIGYGNMGKAFAKR 156

Query: 98  LQAFGF-IISYNSRRKRPSVLFPYCANV--YDLAVNSDVLVVCCALTEQTHHIINKDVMA 154
           L  FG  +I+Y+  +        Y   V    L   +D+L +   LT +T  ++NK+ ++
Sbjct: 157 LSGFGCKVIAYDKYKNFGDA---YAEQVSLETLFKEADILSLHIPLTPETRGMVNKEFIS 213

Query: 155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEN----------DPNVPKEPL 204
              K    IN  RG ++  K++++ L  G I G  LDV E            P   +  +
Sbjct: 214 SFKKPFYFINTARGKVVVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLI 273

Query: 205 RLDNIVLLP 213
           +   ++L P
Sbjct: 274 KSPKVILTP 282

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score = 89.0 bits (221), Expect = 7e-21
 Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 9/175 (5%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLW--AKTGDYPLGFKLGGMQVGIVRLGNIGSEVL 95
           VA+  + +++  +R   P +     G W  A        + L GM VGIV  G IG  VL
Sbjct: 151 VAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSR--SYDLEGMTVGIVGAGRIGLAVL 208

Query: 96  NRLQAFGFIISYNSRRKRPSVL-----FPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150
            RL+ F   + Y  R + P  +       Y  +   L    DV+ + C L  +T H+ + 
Sbjct: 209 RRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDA 268

Query: 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR 205
           DV++ + +G  ++N  RG ++D   +++ L  G + G   DV+   P     P R
Sbjct: 269 DVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWR 323

Length = 385

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score = 88.4 bits (220), Expect = 9e-21
 Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 12/155 (7%)

Query: 59  YVRAGL--WAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPS 115
           YV + L   A+      GF L G  VGIV +GN+GS +  RL+A G  ++  +  R    
Sbjct: 97  YVLSALLVLAQ----RQGFSLKGKTVGIVGVGNVGSRLARRLEALGMNVLLCDPPRAEAE 152

Query: 116 VLFPYCANVYDLAVNSDVLVVCCALTEQ----THHIINKDVMAELGKGGMIINVGRGALI 171
              P   ++ +L   +D++ +   LT      T+H++++D +A L  G ++IN  RGA+I
Sbjct: 153 GD-PGFVSLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILINASRGAVI 211

Query: 172 DEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRL 206
           D + +L  L +G    V LDV+EN+P +  E L  
Sbjct: 212 DNQALLALLQRGKDLRVVLDVWENEPEIDLELLDK 246

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score = 87.6 bits (218), Expect = 9e-21
 Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 10/183 (5%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLG-FKLGGMQVGIVRLGNIGSEVLN 96
           VA+L IG +I   RR+   N     G+W K+     G  ++ G  +GI+  G+IGS++  
Sbjct: 101 VAELVIGEIIMLARRLPDRNAAAHRGIWNKSAT---GSHEVRGKTLGIIGYGHIGSQLSV 157

Query: 97  RLQAFGF-IISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE 155
             +A G  +I Y+   K P       +++ +L   +D + +    T  T ++I  + +A+
Sbjct: 158 LAEALGMRVIFYDIAEKLPLGNARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQ 217

Query: 156 LGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKE----PLR-LDNIV 210
           + KG ++IN  RG ++D   + + L  G + G  +DVF  +P    E    PL+ L N++
Sbjct: 218 MKKGAILINASRGTVVDIDALAEALRSGHLAGAAVDVFPEEPASNGEPFSSPLQGLPNVI 277

Query: 211 LLP 213
           L P
Sbjct: 278 LTP 280

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score = 86.0 bits (213), Expect = 5e-20
 Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 16/188 (8%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVR--AGLWAKTG-----DYPLGFKLGGMQVGIVRLGNI 90
           V +  +G++  F  + S   WY    +  WA        DYP+   + G  +G+   G +
Sbjct: 102 VPEHVLGMI--FALKHSLMGWYRDQLSDRWATCKQFCYFDYPIT-DVRGSTLGVFGKGCL 158

Query: 91  GSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150
           G+EV    QA G  + Y   +        Y     ++   +D++ + C LTE T ++IN 
Sbjct: 159 GTEVGRLAQALGMKVLYAEHKGASVCREGYTP-FEEVLKQADIVTLHCPLTETTQNLINA 217

Query: 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-----R 205
           + +A +     +IN GRG L+DE+ +L  L  G I G  LDV   +P     PL     R
Sbjct: 218 ETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKR 277

Query: 206 LDNIVLLP 213
           L N+++ P
Sbjct: 278 LPNLLITP 285

Length = 314

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score = 84.7 bits (210), Expect = 2e-19
 Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 7/174 (4%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+  + +++  +R   PG+     G W         + L G  VG V  G IG  VL R
Sbjct: 121 VAEHVVMMILILVRNYVPGHEQAIEGGWNVADVVKRAYDLEGKTVGTVGAGRIGLRVLRR 180

Query: 98  LQAFGFIISYNSRRKRPSVLFP-----YCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152
           L+ F   + Y  R + P  +         A++ D+    DV+ + C L  +T  + NK++
Sbjct: 181 LKPFDVHLLYYDRHRLPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKEL 240

Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKE-PLR 205
           ++++ KG  ++N  RG + D + + + L  G + G   DV+   P  PK+ P R
Sbjct: 241 LSKMKKGAYLVNTARGKICDREAVAEALESGHLAGYAGDVWFPQP-APKDHPWR 293

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score = 83.4 bits (207), Expect = 6e-19
 Identities = 62/251 (24%), Positives = 108/251 (43%), Gaps = 45/251 (17%)

Query: 3   CYQTNLYACILSEYQNWLKQL-IKQKSI------------AKQADLPI----------VA 39
             QT  Y   + E    L +  IKQ ++            AK+  L I          +A
Sbjct: 50  VQQTLPYDEEVYEK---LAEYGIKQIALRSAGVDMIDLDLAKENGLKITNVPAYSPRAIA 106

Query: 40  DLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQ 99
           + A+   ++ LR     +  V  G +       +G ++  + VGI+  G IGS      +
Sbjct: 107 EFAVTQALNLLRNTPEIDRRVAKGDFRWAPG-LIGREIRDLTVGIIGTGRIGSAAAKIFK 165

Query: 100 AFGF-IISYNSRRKRPSV--LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
            FG  +I+Y      P +     Y  ++ DL   +D++ +   LT++ HH+IN +  A++
Sbjct: 166 GFGAKVIAY-DPYPNPELEKFLLYYDSLEDLLKQADIISLHVPLTKENHHLINAEAFAKM 224

Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEN--------------DPNVPKE 202
             G +++N  RG L+D K ++  L  G I G  LD +EN              +  V KE
Sbjct: 225 KDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYENETGYFNKDWSGKEIEDEVLKE 284

Query: 203 PLRLDNIVLLP 213
            + + N+++ P
Sbjct: 285 LIAMPNVLITP 295

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 82.6 bits (205), Expect = 8e-19
 Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 16/182 (8%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRA---GLWA--KTGDYPLGFKLGGMQVGIVRLGNIGS 92
            A+LA+ L++  LR +     +VRA   G W   +T        L   +V IV  G+IG 
Sbjct: 95  TAELAVALILASLRGLPR---FVRAQARGRWEPRRTPS------LADRRVLIVGYGSIGR 145

Query: 93  EVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152
            +  RL  F   ++  +R  RP         +  L   +DV+V+   LT++T  +++ + 
Sbjct: 146 AIERRLAPFEVRVTRVARTARPGEQVHGIDELPALLPEADVVVLIVPLTDETRGLVDAEF 205

Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-RLDNIVL 211
           +A +  G +++NV RG ++D   ++  L  G +    LDV + +P  P  PL     +++
Sbjct: 206 LARMPDGALLVNVARGPVVDTDALVAELASGRLR-AALDVTDPEPLPPGHPLWSAPGVLI 264

Query: 212 LP 213
            P
Sbjct: 265 TP 266

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score = 82.4 bits (204), Expect = 9e-19
 Identities = 54/177 (30%), Positives = 80/177 (45%), Gaps = 14/177 (7%)

Query: 36  PIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTG-----DYPLGFKLGGMQVGIVRLGNI 90
           P VA   + LL+    R+      V AG W ++      D+P+  +L G  +G++  G +
Sbjct: 101 PSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPI-VELEGKTLGLLGHGEL 159

Query: 91  GSEVLNRLQAFG---FIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHI 147
           G  V    +AFG    I     R  RP  L      + +L    D L + C LTE T H+
Sbjct: 160 GGAVARLAEAFGMRVLIGQLPGRPARPDRL-----PLDELLPQVDALTLHCPLTEHTRHL 214

Query: 148 INKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL 204
           I    +A +  G ++IN  RG L+DE+ +   L  G + G   DV   +P V   PL
Sbjct: 215 IGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPL 271

Length = 317

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 80.1 bits (198), Expect = 7e-18
 Identities = 58/190 (30%), Positives = 87/190 (45%), Gaps = 11/190 (5%)

Query: 34  DLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKT--GDYPLG-----FKLGGMQVGIVR 86
           D   VA+  + L++  +RR+       R   WA    G  PL        L G +V I  
Sbjct: 92  DGT-VAEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLLGARVLIWG 150

Query: 87  LGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCA--NVYDLAVNSDVLVVCCALTEQT 144
            G+IG  +   L A G  ++  +R       FP  A   + +L   +DVLV+    T  T
Sbjct: 151 FGSIGQRLAPLLTALGARVTGVARSAGERAGFPVVAEDELPELLPETDVLVMILPATPST 210

Query: 145 HHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL 204
            H ++ +V+A L K   ++NVGRGA +DE  ++  L  G + G  LDV   +P     PL
Sbjct: 211 AHALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGRLGGAALDVTATEPLPASSPL 270

Query: 205 -RLDNIVLLP 213
               N++L P
Sbjct: 271 WDAPNLILTP 280

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 75.7 bits (186), Expect = 4e-16
 Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 5/161 (3%)

Query: 50  LRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNS 109
           LR   PG   V +G W   G     + L G  VG V  G IG  +L RL+ F   + Y+ 
Sbjct: 170 LRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHD 229

Query: 110 RRKRPSVL-----FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIIN 164
           R K    L       +  ++  +    DV+V+   LTE+T  + NK+ +A++ KG +I+N
Sbjct: 230 RLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVN 289

Query: 165 VGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR 205
             RGA++D + +      G I G G DV+   P     P R
Sbjct: 290 NARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWR 330

Length = 386

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 74.5 bits (183), Expect = 5e-16
 Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 8/177 (4%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+ A  LL+ + + I   N+ ++ G + K     L   L    +GI+  G IG  V   
Sbjct: 85  VAEHAFALLLAWAKNICENNYNMKNGNF-KQSPTKL---LYNKSLGILGYGGIGRRVALL 140

Query: 98  LQAFGF-IISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
            +AFG  I +Y        +   Y     D+   SD +++   LT++T  +IN  +++  
Sbjct: 141 AKAFGMNIYAYTRSYVNDGISSIY-MEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLF 199

Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
            KG  IINV R  ++D+ +ML FL   +      DV+ N+P + +     DN++L P
Sbjct: 200 RKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET--NPDNVILSP 254

Length = 303

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score = 72.2 bits (177), Expect = 6e-15
 Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 27/207 (13%)

Query: 39  ADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYP---LGFKLGGMQVGIVRLGNIGSEVL 95
           A+LA  L +   RRI   + ++RAGL+   G  P   +G  L G  VG++  G IGS   
Sbjct: 124 AELAASLSLAAARRIVEADEFMRAGLY--EGWLPHLFVGNLLKGQTVGVIGAGRIGS-AY 180

Query: 96  NRLQAFGFIIS------YNSRR---------------KRPSVLFPYCANVYDLAVNSDVL 134
            R+   GF ++      Y S R                   V +   +++ ++   +DV+
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI 240

Query: 135 VVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE 194
            +   L + T+H+INK+ +A + K  +++N  RG +IDE  +++ L    +  VGLDVFE
Sbjct: 241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFE 300

Query: 195 NDPNVPKEPLRLDNIVLLPCQNALTHW 221
           ++P +      + N V++P   + + W
Sbjct: 301 DEPYMKPGLADMKNAVVVPHIASASKW 327

Length = 386

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score = 71.7 bits (177), Expect = 1e-14
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 28/192 (14%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLG-FKLGGMQVGIVRLGNIGSEVLN 96
           VA+L IG +I  LR I   N     G W K+     G F++ G  +GIV  G+IG+++  
Sbjct: 112 VAELVIGEIILLLRGIPEKNAKAHRGGWNKSAA---GSFEVRGKTLGIVGYGHIGTQLSV 168

Query: 97  RLQAFGFIISY----------NSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHH 146
             ++ G  + +          N+R+           ++ +L   SDV+ +    T  T +
Sbjct: 169 LAESLGMRVYFYDIEDKLPLGNARQ---------VGSLEELLAQSDVVSLHVPETPSTKN 219

Query: 147 IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKE---- 202
           +I  + +A +  G ++IN  RG ++D   +   L  G + G  +DVF  +P    +    
Sbjct: 220 MIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFES 279

Query: 203 PLR-LDNIVLLP 213
           PLR LDN++L P
Sbjct: 280 PLRGLDNVILTP 291

Length = 409

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 33/153 (21%)

Query: 79  GMQVGIVRLGNIGSEVLNRLQAFGF-IISYN--------SRRKR---------PSVLFPY 120
           G +VGI+  G+IG +     QA G  + +Y         SR+           P    P 
Sbjct: 133 GKRVGILGYGSIGRQTARLAQALGMEVYAYTRSPRPTPESRKDDGYIVPGTGDPDGSIPS 192

Query: 121 C-------ANVYD-LAVNSDVLVVCCALTEQTHHIINKDVMAELGKGG-MIINVGRGALI 171
                   A++++ L  + D+LVV   LT  T H++  +    L K    + N+ RG+L+
Sbjct: 193 AWFSGTDKASLHEFLRQDLDLLVVSLPLTPATKHLLGAEEFEILAKRKTFVSNIARGSLV 252

Query: 172 DEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL 204
           D   ++  L  G I G  LDV   DP    EPL
Sbjct: 253 DTDALVAALESGQIRGAALDV--TDP----EPL 279

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score = 57.7 bits (140), Expect = 5e-10
 Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 33/179 (18%)

Query: 38  VADLAIGLLIDFLR-------RISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNI 90
           +A+LA  L +   R       R +  N+ V   +++K        ++    VGI+  G I
Sbjct: 105 IAELAFTLAMTLSRHTAYTASRTANKNFKVDPFMFSK--------EIRNSTVGIIGTGRI 156

Query: 91  GSEVLNRLQAFGF-IISYNSRRKRPSVLFP------YCANVY--DLAVNSDVLVVCCA-L 140
           G       +  G  +I Y+        ++P          V   +L   SD++ +    +
Sbjct: 157 GLTAAKLFKGLGAKVIGYD--------IYPSDAAKDVVTFVSLDELLKKSDIISLHVPYI 208

Query: 141 TEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNV 199
             +   +INK+ ++++  G ++IN  RG L DE+ +L+ L  G + G G DV  N+  +
Sbjct: 209 KGKNDKLINKEFISKMKDGAILINTARGELQDEEAILEALESGKLAGFGTDVLNNEKEI 267

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score = 57.6 bits (139), Expect = 5e-10
 Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 80  MQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCC 138
           M V I+  G IG+        FG  I +Y++   +      Y  +V +   ++D++ +  
Sbjct: 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHV 206

Query: 139 ALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPN 198
              ++++H+ +K +   + KG +++N  RGA+I+  +++  +  G + G  +D +EN+  
Sbjct: 207 PANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAA 266

Length = 330

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 7/127 (5%)

Query: 73  LGFKLGGMQVGIVRLGNIGSEVLNRL-QAFGF-IISYN---SRRKRPSVLFPYCANVYDL 127
           L   +  ++V ++  G IG  V     + +G  +++Y+   + +    V   Y   + + 
Sbjct: 140 LSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYV--DYKDTIEEA 197

Query: 128 AVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDING 187
              +D++ +    T+  H++ N D+     KG + +N  RG+L+D K +L  L  G I G
Sbjct: 198 VEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKG 257

Query: 188 VGLDVFE 194
             LD +E
Sbjct: 258 AALDTYE 264

Length = 332

>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 3/127 (2%)

Query: 81  QVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKR--PSV-LFPYCANVYDLAVNSDVLVVC 137
            +GI+  G +GS+V   LQ +GF +   SR ++  P V  F     +      + VL+  
Sbjct: 138 TIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINL 197

Query: 138 CALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP 197
              T +T  IIN+ ++ +L  G  ++N+ RG  + E ++L  L  G + G  LDVF  +P
Sbjct: 198 LPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREP 257

Query: 198 NVPKEPL 204
             P+ PL
Sbjct: 258 LPPESPL 264

Length = 312

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 10/133 (7%)

Query: 74  GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNS--RRKR-PSVLFPYCANVYDLAVN 130
           G  L     G+V  G++G  ++  L+  G+ +      R++      F    ++  +   
Sbjct: 111 GVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDF---VSLERILEE 167

Query: 131 SDVLVVCCALTEQ----THHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN 186
            DV+ +   LT++    T H++++  +A L  G  +IN  RGA++D + + + L+ G+  
Sbjct: 168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDL 227

Query: 187 GVGLDVFENDPNV 199
              LDV+E +P +
Sbjct: 228 DAVLDVWEGEPQI 240

Length = 381

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 51.8 bits (124), Expect = 7e-08
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 22/145 (15%)

Query: 74  GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYD------- 126
           GF L    VGIV +GN+G  +  RL+A G          +  +  P  A+  D       
Sbjct: 111 GFSLHDRTVGIVGVGNVGRRLQARLEALGI---------KTLLCDPPRADRGDEGDFRSL 161

Query: 127 --LAVNSDVLVVCCALTE----QTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFL 180
             L   +D+L     L +    +T H+ ++ ++  L  G ++IN  RGA++D   +L  L
Sbjct: 162 DELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCL 221

Query: 181 VQGDINGVGLDVFENDPNVPKEPLR 205
            +G    V LDV+E +P +  E L+
Sbjct: 222 NEGQKLSVVLDVWEGEPELNVELLK 246

Length = 378

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 22/169 (13%)

Query: 37  IVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLN 96
              +L++  +  FL    PG       +  KT             V +V  G +G E   
Sbjct: 131 GAGELSVQFIARFLEVQQPGRLGGAPDVAGKT-------------VVVVGAGVVGKEAAQ 177

Query: 97  RLQAFGF-IISYNSRRKRPS---VLFPY-CANVYDLAVNSDVLVVCCALTEQTHHIIN-K 150
            L+  G  ++  +   +       L       + +    +DV+V    L  +   I+  +
Sbjct: 178 MLRGLGAQVLITDINVEALEQLEELGGKNVEELEEALAEADVIVTTTLLPGKRAGILVPE 237

Query: 151 DVMAELGKGGMIINVGRGAL-IDEKEMLQFLVQGDINGVGLDVFENDPN 198
           +++ ++  G +I+NV  GA+   +    Q L +G       DV  N P 
Sbjct: 238 ELVEQMKPGSVIVNVAVGAVGCVQALHTQLLEEGHGVVHYGDV--NMPG 284

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 17/135 (12%)

Query: 77  LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVL-- 134
           L G++VGI+ LG  G  + + L  FG  + Y SR ++P       A        +++L  
Sbjct: 136 LTGLKVGIIGLGTTGQMIADALSFFGADVYYYSRTRKPD----AEAKGIRYLPLNELLKT 191

Query: 135 --VVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN------ 186
             V+C  L +    ++ ++    LG G ++ N   G   + + + ++L     N      
Sbjct: 192 VDVICTCLPKNV-ILLGEEEFELLGDGKILFNTSLGPSFEVEALKKWLKASGYNIFDCDT 250

Query: 187 --GVGLDVFENDPNV 199
              +G +     PNV
Sbjct: 251 AGALGDEELLRYPNV 265

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PLN02306	386	hydroxypyruvate reductase	100.0
PLN02928	347	oxidoreductase family protein	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.95
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.87
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.78
PLN02494	477	adenosylhomocysteinase	99.71
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.63
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.61
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.59
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.59
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.52
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.46
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.46
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.45
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.45
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.4
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.39
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.36
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.35
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.33
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.27
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.27
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.26
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.26
PLN02858	1378	fructose-bisphosphate aldolase	99.26
PLN02712	667	arogenate dehydrogenase	99.23
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.22
PLN02858	1378	fructose-bisphosphate aldolase	99.2
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.2
PLN02256	304	arogenate dehydrogenase	99.17
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.16
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.1
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.05
PRK08655	437	prephenate dehydrogenase; Provisional	99.05
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.05
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.01
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	99.01
PLN02712	667	arogenate dehydrogenase	98.98
PRK07417	279	arogenate dehydrogenase; Reviewed	98.98
PRK05225	487	ketol-acid reductoisomerase; Validated	98.97
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.96
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.96
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.95
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.95
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.93
PRK08818	370	prephenate dehydrogenase; Provisional	98.92
PLN02688	266	pyrroline-5-carboxylate reductase	98.92
PRK06545	359	prephenate dehydrogenase; Validated	98.92
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.9
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.89
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.89
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.88
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.87
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.85
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.83
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.82
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.81
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.81
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.81
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.8
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.79
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.78
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.77
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.77
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.77
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.76
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.76
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.75
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	98.73
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.72
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.72
PRK08507	275	prephenate dehydrogenase; Validated	98.7
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.7
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.7
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.69
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.69
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.69
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.68
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.68
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.67
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.66
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.65
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.64
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.64
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.63
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.62
PRK07680	273	late competence protein ComER; Validated	98.61
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.59
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.59
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.58
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.57
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.57
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.52
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.46
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.45
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.44
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.42
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	98.4
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.39
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.39
PTZ00431	260	pyrroline carboxylate reductase; Provisional	98.39
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.39
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.38
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.35
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.34
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.33
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	98.33
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.32
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.32
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	98.32
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.31
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.3
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.3
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.3
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.29
PLN00203	519	glutamyl-tRNA reductase	98.29
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	98.29
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.29
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.28
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.28
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	98.25
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.25
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	98.24
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	98.24
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	98.24
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.21
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	98.2
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.19
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.17
PRK06141	314	ornithine cyclodeaminase; Validated	98.16
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.16
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	98.14
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.12
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.11
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	98.11
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	98.1
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.1
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.1
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.09
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	98.08
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.08
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.08
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	98.05
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	98.05
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	98.04
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.04
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.03
PRK13940	414	glutamyl-tRNA reductase; Provisional	98.03
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.02
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.02
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	98.01
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	98.0
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.0
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.99
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.98
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.98
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.96
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.96
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.96
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.96
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.95
PRK07340	304	ornithine cyclodeaminase; Validated	97.93
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	97.92
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.91
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.91
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.9
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.89
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.87
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.87
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.87
PRK14982	340	acyl-ACP reductase; Provisional	97.85
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.83
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.82
PLN02477	410	glutamate dehydrogenase	97.81
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.8
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.79
PRK08618	325	ornithine cyclodeaminase; Validated	97.79
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.77
PRK06046	326	alanine dehydrogenase; Validated	97.74
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.73
PRK06444	197	prephenate dehydrogenase; Provisional	97.71
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	97.7
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.69
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.69
PRK09414	445	glutamate dehydrogenase; Provisional	97.68
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.68
PRK08291	330	ectoine utilization protein EutC; Validated	97.67
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.67
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	97.66
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.66
PRK06823	315	ornithine cyclodeaminase; Validated	97.66
PRK13303	265	L-aspartate dehydrogenase; Provisional	97.65
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.64
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	97.64
PRK14030	445	glutamate dehydrogenase; Provisional	97.63
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.62
PTZ00117	319	malate dehydrogenase; Provisional	97.61
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.59
PRK06199	379	ornithine cyclodeaminase; Validated	97.58
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	97.57
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.56
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.56
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	97.55
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.55
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.53
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	97.53
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.53
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	97.52
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.52
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	97.52
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.51
PRK14031	444	glutamate dehydrogenase; Provisional	97.51
PRK06407	301	ornithine cyclodeaminase; Provisional	97.48
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	97.46
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	97.46
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	97.44
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.44
PRK07589	346	ornithine cyclodeaminase; Validated	97.38
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.36
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	97.34
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.34
COG5322	351	Predicted dehydrogenase [General function predicti	97.32
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.3
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.28
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	97.26
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	97.25
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.24
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.23
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	97.23
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.21
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.2
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.18
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.18
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.17
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	97.16
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.15
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	97.14
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.13
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.12
PRK06223	307	malate dehydrogenase; Reviewed	97.11
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	97.1
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	97.08
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	97.08
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	97.06
PTZ00082	321	L-lactate dehydrogenase; Provisional	97.06
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	97.02
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.98
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.97
TIGR00036	266	dapB dihydrodipicolinate reductase.	96.96
PRK09496	453	trkA potassium transporter peripheral membrane com	96.95
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	96.95
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.93
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.92
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.91
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.9
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.9
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	96.87
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.86
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	96.86
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.85
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.85
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.83
PRK06270	341	homoserine dehydrogenase; Provisional	96.82
PRK00779	304	ornithine carbamoyltransferase; Provisional	96.8
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.79
PLN02527	306	aspartate carbamoyltransferase	96.77
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	96.76
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	96.74
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.73
PRK08223	287	hypothetical protein; Validated	96.71
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.71
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.69
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.69
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.67
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.66
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	96.66
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	96.66
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.65
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.65
PLN02342	348	ornithine carbamoyltransferase	96.64
PRK02255	338	putrescine carbamoyltransferase; Provisional	96.64
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.63
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	96.6
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.6
PRK07411	390	hypothetical protein; Validated	96.59
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.59
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	96.58
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.58
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.58
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.57
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.57
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.55
PRK10637	457	cysG siroheme synthase; Provisional	96.52
PRK01713	334	ornithine carbamoyltransferase; Provisional	96.5
PRK06349	426	homoserine dehydrogenase; Provisional	96.49
PRK10669	558	putative cation:proton antiport protein; Provision	96.49
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	96.48
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.47
PLN02948	577	phosphoribosylaminoimidazole carboxylase	96.47
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	96.46
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.44
PRK02102	331	ornithine carbamoyltransferase; Validated	96.43
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.42
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.42
PRK11579	346	putative oxidoreductase; Provisional	96.42
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.41
PRK08328	231	hypothetical protein; Provisional	96.41
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.4
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.4
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	96.37
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	96.34
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.33
PRK04284	332	ornithine carbamoyltransferase; Provisional	96.32
PRK07877	722	hypothetical protein; Provisional	96.32
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	96.31
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.3
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	96.28
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	96.26
PRK09496	453	trkA potassium transporter peripheral membrane com	96.2
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.2
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	96.18
PRK11891	429	aspartate carbamoyltransferase; Provisional	96.18
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.17
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.16
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	96.15
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	96.12
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	96.09
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.08
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.08
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	96.07
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	96.06
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.06
PRK08300	302	acetaldehyde dehydrogenase; Validated	96.05
PRK06392	326	homoserine dehydrogenase; Provisional	96.04
COG2910	211	Putative NADH-flavin reductase [General function p	96.0
PRK08324	681	short chain dehydrogenase; Validated	95.99
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.95
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	95.94
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	95.93
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.91
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	95.89
COG2344	211	AT-rich DNA-binding protein [General function pred	95.88
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.88
PRK05086	312	malate dehydrogenase; Provisional	95.88
COG0673	342	MviM Predicted dehydrogenases and related proteins	95.84
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	95.8
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	95.78
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	95.78
PRK14804	311	ornithine carbamoyltransferase; Provisional	95.76
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.76
CHL00194	317	ycf39 Ycf39; Provisional	95.76
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	95.73
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.73
PRK04148	134	hypothetical protein; Provisional	95.73
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	95.72
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	95.72
PRK12862	763	malic enzyme; Reviewed	95.72
COG0281	432	SfcA Malic enzyme [Energy production and conversio	95.71
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.71
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	95.7
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.7
PLN02602	350	lactate dehydrogenase	95.7
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.69
PRK08192	338	aspartate carbamoyltransferase; Provisional	95.67
PLN02383	344	aspartate semialdehyde dehydrogenase	95.62
PLN00106	323	malate dehydrogenase	95.61
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	95.59
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	95.57
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	95.56
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	95.55
PRK07806	248	short chain dehydrogenase; Provisional	95.53
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	95.49
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	95.48
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	95.4
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.4
PLN02586	360	probable cinnamyl alcohol dehydrogenase	95.39
PRK14851	679	hypothetical protein; Provisional	95.38
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	95.37
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.36
PRK08374	336	homoserine dehydrogenase; Provisional	95.25
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	95.25
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	95.24
PRK10206	344	putative oxidoreductase; Provisional	95.22
PRK10537	393	voltage-gated potassium channel; Provisional	95.2
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	95.2
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	95.19
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	95.17
PTZ00325	321	malate dehydrogenase; Provisional	95.16
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	95.16
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	95.11
PLN02214	342	cinnamoyl-CoA reductase	94.98
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	94.97
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	94.95
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	94.95
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	94.93
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	94.92
PLN03209	576	translocon at the inner envelope of chloroplast su	94.84
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	94.83
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	94.83
PRK06398	258	aldose dehydrogenase; Validated	94.82
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	94.79
PLN02695	370	GDP-D-mannose-3',5'-epimerase	94.74
PRK12861	764	malic enzyme; Reviewed	94.73
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	94.71
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	94.71
PRK08265	261	short chain dehydrogenase; Provisional	94.7
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	94.69
PRK05884	223	short chain dehydrogenase; Provisional	94.68
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	94.68
PRK07523	255	gluconate 5-dehydrogenase; Provisional	94.68
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	94.66
PRK06523	260	short chain dehydrogenase; Provisional	94.65
PLN00112	444	malate dehydrogenase (NADP); Provisional	94.62
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.61
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	94.57
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	94.56
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	94.55
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	94.53
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.53
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	94.51
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	94.49
PRK08628	258	short chain dehydrogenase; Provisional	94.48
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	94.47
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	94.46
PLN02427	386	UDP-apiose/xylose synthase	94.46
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	94.42
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	94.41
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	94.39
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	94.38
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	94.33
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	94.32
PRK12937	245	short chain dehydrogenase; Provisional	94.3
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	94.29
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	94.25
PLN02178	375	cinnamyl-alcohol dehydrogenase	94.25
PRK08862	227	short chain dehydrogenase; Provisional	94.21
PRK05442	326	malate dehydrogenase; Provisional	94.19
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	94.14
PRK14852	989	hypothetical protein; Provisional	94.13
PRK06197	306	short chain dehydrogenase; Provisional	94.12
PLN02896	353	cinnamyl-alcohol dehydrogenase	94.08
PRK05865	854	hypothetical protein; Provisional	94.07
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	94.06
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	94.06
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	94.05
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	94.04
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.04
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	94.02
PLN02514	357	cinnamyl-alcohol dehydrogenase	94.01
PRK08264	238	short chain dehydrogenase; Validated	94.0
PRK05717	255	oxidoreductase; Validated	93.98
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.96
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	93.95
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	93.94
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	93.92
PRK12367	245	short chain dehydrogenase; Provisional	93.9
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	93.89
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	93.87
PLN03129	581	NADP-dependent malic enzyme; Provisional	93.86
PRK15076	431	alpha-galactosidase; Provisional	93.86
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	93.85
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	93.84
PRK09186	256	flagellin modification protein A; Provisional	93.83
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	93.83
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	93.83
PRK07478	254	short chain dehydrogenase; Provisional	93.81
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	93.77
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	93.74
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	93.74
PF00289	110	CPSase_L_chain: Carbamoyl-phosphate synthase L cha	93.7
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	93.7
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	93.69
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	93.68
PRK06196	315	oxidoreductase; Provisional	93.67
PRK08589	272	short chain dehydrogenase; Validated	93.67
PRK07825	273	short chain dehydrogenase; Provisional	93.66
PRK06153	393	hypothetical protein; Provisional	93.64
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	93.63
PRK07890	258	short chain dehydrogenase; Provisional	93.63

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=1e-66  Score=454.21  Aligned_cols=218  Identities=28%  Similarity=0.411  Sum_probs=204.0

Q ss_pred             CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCcccc
Q 035615            2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKL   77 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l   77 (223)
                      .+|+||||++.++|+||||.+++.++||    +|++|+.+||||+++++|+++|+++.+++.+++|.|.+. . ..+.+|
T Consensus        63 ~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~-~-~~g~el  140 (324)
T COG0111          63 AAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRK-A-FRGTEL  140 (324)
T ss_pred             hCCCceEEEEccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCcccc-c-cccccc
Confidence            4799999999999999999999999998    799999999999999999999999999999999999962 2 246799


Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-C---CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-V---LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~---~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      +||||||||+|+||+.+|+++++|||+|++||+..... .   +.....++++++++||+|++|+|+|++|++|||++.|
T Consensus       141 ~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~  220 (324)
T COG0111         141 AGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEEL  220 (324)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHH
Confidence            99999999999999999999999999999999954432 2   3445678999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CCCCCCceEEccCCCCCCCC
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK-EPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~-~l~~~~nv~~TPH~a~~t~~  221 (223)
                      ++||+|++|||+|||++||++||++||++|+|+||+||||++||++++ |||++|||++|||+||.|.|
T Consensus       221 a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~e  289 (324)
T COG0111         221 AKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDE  289 (324)
T ss_pred             hhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHH
Confidence            999999999999999999999999999999999999999999999886 99999999999999999986

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-64  Score=440.25  Aligned_cols=219  Identities=26%  Similarity=0.360  Sum_probs=200.6

Q ss_pred             CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCC----C
Q 035615            2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYP----L   73 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~----~   73 (223)
                      .+|+||||+++++|+||||+++++++||    +||+|+.+||||++++||++.|++..+++.+++|.|.....+.    .
T Consensus        60 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~  139 (311)
T PRK08410         60 QLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRP  139 (311)
T ss_pred             hCCCCeEEEEcccccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCcc
Confidence            3799999999999999999999999998    6999999999999999999999999999999999997542211    2


Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      +.+|.||||||||+|+||+.+|+++++|||+|++|||+.........+.++++++++||+|++|+|+|++|+++||++.|
T Consensus       140 ~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~  219 (311)
T PRK08410        140 LGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKEL  219 (311)
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHH
Confidence            46899999999999999999999999999999999997543322234568999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CCCCC---CceEEccCCCCCCCC
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK-EPLRL---DNIVLLPCQNALTHW  221 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~-~l~~~---~nv~~TPH~a~~t~~  221 (223)
                      ++||+|++|||+|||++||++||++||++|+|+ |+||||++||++++ |||++   |||++|||+|++|.+
T Consensus       220 ~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e  290 (311)
T PRK08410        220 KLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKE  290 (311)
T ss_pred             HhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHH
Confidence            999999999999999999999999999999999 99999999998764 89987   899999999999865

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=4.4e-64  Score=438.73  Aligned_cols=220  Identities=28%  Similarity=0.437  Sum_probs=201.5

Q ss_pred             CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCC-CCCCccc
Q 035615            2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTG-DYPLGFK   76 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~-~~~~~~~   76 (223)
                      .+|+||||+++++|+||||.++++++||    +||+|+++||||++++||++.|++..+++.+++|.|.... ....+.+
T Consensus        63 ~~p~Lk~I~~~g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~  142 (323)
T PRK15409         63 KMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTD  142 (323)
T ss_pred             hCCCCeEEEECceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCC
Confidence            4799999999999999999999999998    6999999999999999999999999999999999997431 1124678


Q ss_pred             cCCCEEEEEecChHHHHHHHHHH-hCCCEEEEEcCCCCCCC---CcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQ-AFGFIISYNSRRKRPSV---LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~---~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      |.|||+||||+|+||+.+|++++ +|||+|++|+|......   ....+.++++++++||+|++|+|+|++|+++|+++.
T Consensus       143 L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~  222 (323)
T PRK15409        143 VHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQ  222 (323)
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHH
Confidence            99999999999999999999998 99999999998754321   112356999999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCCCCCCceEEccCCCCCCCC
Q 035615          153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP-KEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~-~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      |++||+|++|||+|||++||++||++||++|+|.||+||||++||++. +|||++|||++|||+||.|.+
T Consensus       223 l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e  292 (323)
T PRK15409        223 FAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHE  292 (323)
T ss_pred             HhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHH
Confidence            999999999999999999999999999999999999999999999875 489999999999999999975

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=7.1e-64  Score=436.12  Aligned_cols=219  Identities=36%  Similarity=0.604  Sum_probs=201.8

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCC--CCCCccc
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTG--DYPLGFK   76 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~--~~~~~~~   76 (223)
                      +|+||+|+..++||||||+++++++||    +|++++++||||++++||++.|++.++++.+++|.|...+  ....+++
T Consensus        64 ~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~  143 (324)
T COG1052          64 LPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFD  143 (324)
T ss_pred             CCCcEEEEEeccccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccC
Confidence            599999999999999999999999999    6999999999999999999999999999999999998753  2346789


Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC---CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS---VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      ++|||+||||+|+||+++|+++++|||+|+||+|++.+.   .....+.+++|++++||+|++|||+|++|+|+||++.|
T Consensus       144 l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l  223 (324)
T COG1052         144 LRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEEL  223 (324)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHH
Confidence            999999999999999999999999999999999998521   12133455999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCC-CCCCCCCCc---eEEccCCCCCCCC
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNV-PKEPLRLDN---IVLLPCQNALTHW  221 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~-~~~l~~~~n---v~~TPH~a~~t~~  221 (223)
                      ++||+|++|||+|||++||++||++||++|+|.||++|||+.||.. ++||+.++|   |++|||+|++|.|
T Consensus       224 ~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~e  295 (324)
T COG1052         224 AKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEE  295 (324)
T ss_pred             HhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHH
Confidence            9999999999999999999999999999999999999999999985 568887777   9999999999965

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.8e-63  Score=434.31  Aligned_cols=217  Identities=25%  Similarity=0.390  Sum_probs=199.5

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCC----CCc
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDY----PLG   74 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~----~~~   74 (223)
                      +|+||||+++++|+||||.+++.++||    +||+++.+||||++++||++.|++..+++.+++|.|.....+    ..+
T Consensus        64 ~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~  143 (317)
T PRK06487         64 APQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPI  143 (317)
T ss_pred             CCCCeEEEEcCccccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcc
Confidence            799999999999999999999999998    699999999999999999999999999999999999754221    124


Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA  154 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~  154 (223)
                      .+|.||||||||+|+||+.+|+++++|||+|++|+++....  .....++++++++||+|++|+|+|++|+++||++.|+
T Consensus       144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~--~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~  221 (317)
T PRK06487        144 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA--RPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELA  221 (317)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc--cccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHh
Confidence            68999999999999999999999999999999999864322  1234689999999999999999999999999999999


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CCCC--CCceEEccCCCCCCCC
Q 035615          155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK-EPLR--LDNIVLLPCQNALTHW  221 (223)
Q Consensus       155 ~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~-~l~~--~~nv~~TPH~a~~t~~  221 (223)
                      +||+|++|||+|||++||++||++||++|+|+||+||||++||++++ |||.  +|||++|||+||+|.+
T Consensus       222 ~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e  291 (317)
T PRK06487        222 LMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSRE  291 (317)
T ss_pred             cCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHH
Confidence            99999999999999999999999999999999999999999998864 8995  8999999999999865

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=5e-63  Score=430.90  Aligned_cols=219  Identities=22%  Similarity=0.328  Sum_probs=199.3

Q ss_pred             CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCC----CC
Q 035615            2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDY----PL   73 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~----~~   73 (223)
                      -+|+||||++.++|+||||.++++++||    +||+++.+||||+++++|++.|++..+++.++++.|.....+    ..
T Consensus        62 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~  141 (314)
T PRK06932         62 QLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYP  141 (314)
T ss_pred             hCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhChHHHHHHHHcCCCCcCccccccCCc
Confidence            3799999999999999999999999998    699999999999999999999999999999999999743221    13


Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      +.+|.||||||||+|+||+.+|+++++|||+|++|++....... ..+.++++++++||+|++|+|+|++|+++||++.|
T Consensus       142 ~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~-~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l  220 (314)
T PRK06932        142 ITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCR-EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETL  220 (314)
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccc-cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHH
Confidence            46899999999999999999999999999999999986432211 22568999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCCC----CCCceEEccCCCCCCCC
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP-KEPL----RLDNIVLLPCQNALTHW  221 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~-~~l~----~~~nv~~TPH~a~~t~~  221 (223)
                      ++||+|++|||+|||++||++||+++|++|+|+||+||||++||++. +|||    ++|||++|||+|++|.+
T Consensus       221 ~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e  293 (314)
T PRK06932        221 ALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDS  293 (314)
T ss_pred             HhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHH
Confidence            99999999999999999999999999999999999999999999875 4898    59999999999999965

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-61  Score=429.83  Aligned_cols=219  Identities=25%  Similarity=0.319  Sum_probs=202.0

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      +|+||||++.++|+||||++++.++||    ++|+|+.+||||++++||++.|++..+++.+++|.|........+++|.
T Consensus       119 ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~  198 (386)
T PLN03139        119 AKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLE  198 (386)
T ss_pred             CCCccEEEECCccccccCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCC
Confidence            799999999999999999999999999    6999999999999999999999999999999999997532223467899


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      ||||||||+|+||+.+|++|++|||+|++||++..+..     ++....++++++++||+|++|+|++++|+++|+++.|
T Consensus       199 gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l  278 (386)
T PLN03139        199 GKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERI  278 (386)
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHH
Confidence            99999999999999999999999999999998754321     2334468999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CCCCCCceEEccCCCCCCCC
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK-EPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~-~l~~~~nv~~TPH~a~~t~~  221 (223)
                      ++||+|++|||++||++||++||+++|++|+|.||++|||++||++.+ |||.+|||++|||+||.|.+
T Consensus       279 ~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~  347 (386)
T PLN03139        279 AKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTID  347 (386)
T ss_pred             hhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHH
Confidence            999999999999999999999999999999999999999999998764 99999999999999999865

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=1.8e-61  Score=424.36  Aligned_cols=220  Identities=30%  Similarity=0.483  Sum_probs=202.0

Q ss_pred             CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCC-----CCC
Q 035615            2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTG-----DYP   72 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~-----~~~   72 (223)
                      .+|+||||+++++|+||||.++++++||    +||+|+.+||||++++||++.|++..+++.+++|.|....     ...
T Consensus        64 ~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~  143 (333)
T PRK13243         64 AAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMF  143 (333)
T ss_pred             hCCCCeEEEecCccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccc
Confidence            3799999999999999999999999998    6999999999999999999999999999999999997421     112


Q ss_pred             CccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---CcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      .+.+|+||||||||+|+||+.+|+++++|||+|++|||++....   ......++++++++||+|++|+|+|++|+++|+
T Consensus       144 ~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~  223 (333)
T PRK13243        144 LGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMIN  223 (333)
T ss_pred             cccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccC
Confidence            46789999999999999999999999999999999999765421   112346899999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615          150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      ++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||++++|||++|||++|||+|++|.+
T Consensus       224 ~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e  295 (333)
T PRK13243        224 EERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFE  295 (333)
T ss_pred             HHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHH
Confidence            999999999999999999999999999999999999999999999999987799999999999999999865

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-61  Score=429.90  Aligned_cols=220  Identities=23%  Similarity=0.371  Sum_probs=202.6

Q ss_pred             CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCcccc
Q 035615            2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKL   77 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l   77 (223)
                      -+|+||||+++++|+||||++++.++||    ++++|+.+||||++++||++.|++..+++.+++|.|........+++|
T Consensus       111 ~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L  190 (385)
T PRK07574        111 KAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDL  190 (385)
T ss_pred             hCCCCcEEEECCcccccccHHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceec
Confidence            3799999999999999999999999998    589999999999999999999999999999999999854222246789


Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-----CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      .|+||||||+|+||+.+|++|++|||+|++|||+....     .+...+.+++|++++||+|++|+|+|++|+++|+++.
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~  270 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADV  270 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHH
Confidence            99999999999999999999999999999999986321     1333457899999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CCCCCCceEEccCCCCCCCC
Q 035615          153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK-EPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~-~l~~~~nv~~TPH~a~~t~~  221 (223)
                      |++||+|++|||+|||+++|++||++||++|+|+||++|||++||++++ |||++|||++|||+||.|.+
T Consensus       271 l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e  340 (385)
T PRK07574        271 LSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLS  340 (385)
T ss_pred             HhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHH
Confidence            9999999999999999999999999999999999999999999998764 99999999999999999865

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.3e-61  Score=433.56  Aligned_cols=218  Identities=24%  Similarity=0.366  Sum_probs=202.0

Q ss_pred             CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCcccc
Q 035615            2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKL   77 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l   77 (223)
                      .+|+||||++.++|+||||+++++++||    +||+|+.+||||++++||++.|++..+++.+++|.|.+..  ..+.+|
T Consensus        72 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~--~~~~~L  149 (409)
T PRK11790         72 AAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA--AGSFEV  149 (409)
T ss_pred             hCCCCeEEEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccc--cCcccC
Confidence            3799999999999999999999999999    6999999999999999999999999999999999998532  246789


Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL  156 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~m  156 (223)
                      .|||+||||+|+||+.+|+++++|||+|++||++..... ......+++|++++||+|++|+|+|++|+++||++.|++|
T Consensus       150 ~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~m  229 (409)
T PRK11790        150 RGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALM  229 (409)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcC
Confidence            999999999999999999999999999999998754332 2334568999999999999999999999999999999999


Q ss_pred             CCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC-----CCCCCCCceEEccCCCCCCCC
Q 035615          157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP-----KEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       157 k~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~-----~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      |+|++|||+|||++||++||+++|++|+|.||+||||++||++.     +|||++|||++|||+||+|.+
T Consensus       230 k~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~e  299 (409)
T PRK11790        230 KPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQE  299 (409)
T ss_pred             CCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHH
Confidence            99999999999999999999999999999999999999999874     489999999999999999865

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=9.6e-61  Score=425.49  Aligned_cols=219  Identities=25%  Similarity=0.385  Sum_probs=198.5

Q ss_pred             Ccc--ceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCC-CCCCcc
Q 035615            3 CYQ--TNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTG-DYPLGF   75 (223)
Q Consensus         3 ~p~--Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~-~~~~~~   75 (223)
                      +|+  ||+|+++++|+||||+++++++||    +||+++.+||||++++||++.|++..+++.+++|.|.... ....+.
T Consensus        82 ~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~  161 (386)
T PLN02306         82 LSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGN  161 (386)
T ss_pred             CCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCc
Confidence            564  699999999999999999999998    6999999999999999999999999999999999985321 112467


Q ss_pred             ccCCCEEEEEecChHHHHHHHHHH-hCCCEEEEEcCCCCCCC-------C------------cccccChhhhhcCCcEEE
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQ-AFGFIISYNSRRKRPSV-------L------------FPYCANVYDLAVNSDVLV  135 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~-------~------------~~~~~~l~el~~~aDiv~  135 (223)
                      +|.|+||||||+|+||+.+|++++ +|||+|++||++.....       +            .....+++|++++||+|+
T Consensus       162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~  241 (386)
T PLN02306        162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVIS  241 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEE
Confidence            899999999999999999999985 99999999998764211       0            112358999999999999


Q ss_pred             EeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCC
Q 035615          136 VCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQ  215 (223)
Q Consensus       136 ~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~  215 (223)
                      +|+|+|++|+++||++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||++++|||++|||++|||+
T Consensus       242 lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPHi  321 (386)
T PLN02306        242 LHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHI  321 (386)
T ss_pred             EeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999877799999999999999


Q ss_pred             CCCCCC
Q 035615          216 NALTHW  221 (223)
Q Consensus       216 a~~t~~  221 (223)
                      |++|.+
T Consensus       322 ag~T~e  327 (386)
T PLN02306        322 ASASKW  327 (386)
T ss_pred             ccCcHH
Confidence            999864

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=1.7e-60  Score=419.99  Aligned_cols=215  Identities=26%  Similarity=0.426  Sum_probs=197.5

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCC---CcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCcc
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQA---DLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGF   75 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~---~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~   75 (223)
                      +|+||||++.++|+||+|++++.++||    +|++   |+.+||||+++++|++.|++..+++.++++.|..    ..+.
T Consensus        80 ~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~----~~~~  155 (347)
T PLN02928         80 ASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE----PIGD  155 (347)
T ss_pred             CCCceEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc----cccc
Confidence            799999999999999999999999998    4654   7899999999999999999999999999999964    2457


Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCC----------------cccccChhhhhcCCcEEEEecc
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVL----------------FPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~----------------~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      +|.|||+||||+|+||+.+|+++++|||+|++|+|+......                .....++++++++||+|++|+|
T Consensus       156 ~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lP  235 (347)
T PLN02928        156 TLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCT  235 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCC
Confidence            899999999999999999999999999999999987432110                1135689999999999999999


Q ss_pred             CChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CCCCCCceEEccCCCCC
Q 035615          140 LTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK-EPLRLDNIVLLPCQNAL  218 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~-~l~~~~nv~~TPH~a~~  218 (223)
                      +|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||++++ |||++|||++|||+|++
T Consensus       236 lt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~  315 (347)
T PLN02928        236 LTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGV  315 (347)
T ss_pred             CChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999998764 99999999999999999


Q ss_pred             CCC
Q 035615          219 THW  221 (223)
Q Consensus       219 t~~  221 (223)
                      |.+
T Consensus       316 t~~  318 (347)
T PLN02928        316 TEY  318 (347)
T ss_pred             hHH
Confidence            875

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=3.9e-59  Score=431.06  Aligned_cols=217  Identities=26%  Similarity=0.406  Sum_probs=201.0

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      +|+||||+++++|+||||++++.++||    +||+|+.+||||++++||+++|+++.+++.+++|.|....  ..+.+|.
T Consensus        60 ~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~--~~g~~l~  137 (525)
T TIGR01327        60 APKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKA--FMGTELY  137 (525)
T ss_pred             CCCceEEEECCcccchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccc--cCccccC
Confidence            799999999999999999999999998    6999999999999999999999999999999999997532  2467899


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA  154 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~  154 (223)
                      ||||||||+|+||+.+|+++++|||+|++|||+....    .+.....+++|++++||+|++|+|+|++|+++|+++.|+
T Consensus       138 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~  217 (525)
T TIGR01327       138 GKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELA  217 (525)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHh
Confidence            9999999999999999999999999999999864322    123334589999999999999999999999999999999


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615          155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       155 ~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      +||+|++|||+|||++||++||++||++|+|+||+||||++||++++|||++|||++|||+|+.|.+
T Consensus       218 ~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e  284 (525)
T TIGR01327       218 KMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTRE  284 (525)
T ss_pred             cCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHH
Confidence            9999999999999999999999999999999999999999999877799999999999999999865

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=1.9e-58  Score=401.52  Aligned_cols=216  Identities=21%  Similarity=0.322  Sum_probs=193.2

Q ss_pred             CccceEEEEccccchhHhHHH-----HHhcCC----C-CCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCC
Q 035615            3 CYQTNLYACILSEYQNWLKQL-----IKQKSI----A-KQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYP   72 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~-----~~~~~i----~-~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~   72 (223)
                      +|+||||++.++|+|++|...     +.+++|    + .+.++.+||||+++++|++.|++..+.+.++++.|...    
T Consensus        54 ~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~----  129 (312)
T PRK15469         54 GRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL----  129 (312)
T ss_pred             cCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC----
Confidence            589999999999999998432     334676    2 34689999999999999999999999999999999743    


Q ss_pred             CccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc---ccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF---PYCANVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~---~~~~~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      ...+++|+||||||+|+||+.+|++|++|||+|++|+++.+...+.   ....++++++++||+|++|+|+|++|+++|+
T Consensus       130 ~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~  209 (312)
T PRK15469        130 PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIIN  209 (312)
T ss_pred             CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhH
Confidence            3457999999999999999999999999999999999876543322   2246899999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CCCCCCceEEccCCCCCCCCC
Q 035615          150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK-EPLRLDNIVLLPCQNALTHWE  222 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~-~l~~~~nv~~TPH~a~~t~~~  222 (223)
                      ++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||++++ |||++|||++|||+|+.|.++
T Consensus       210 ~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~  283 (312)
T PRK15469        210 QQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA  283 (312)
T ss_pred             HHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH
Confidence            9999999999999999999999999999999999999999999999998764 999999999999999999753

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=3.6e-58  Score=397.94  Aligned_cols=212  Identities=24%  Similarity=0.318  Sum_probs=193.9

Q ss_pred             CCccceEEEEccccchhHhHHHHHhcCC---CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            2 LCYQTNLYACILSEYQNWLKQLIKQKSI---AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i---~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      .+|+||||++.++|+||+|.++++++++   ++|+++.+||||+++++|++.|++..+++.+++|.|...    .+.+|.
T Consensus        46 ~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~----~~~~L~  121 (303)
T PRK06436         46 PGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNAGAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS----PTKLLY  121 (303)
T ss_pred             CCCCeEEEEECCcccCcccHHHHHhCCeEEEcCCCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC----CCCCCC
Confidence            4689999999999999999999998887   578999999999999999999999999999999999853    357899


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcc-cccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFP-YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG  157 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~-~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk  157 (223)
                      ||||||||+|+||+.+|+++++|||+|++|||+.... +.. .+.++++++++||+|++|+|+|++|+++|+++.|++||
T Consensus       122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk  200 (303)
T PRK06436        122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND-GISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFR  200 (303)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc-CcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCC
Confidence            9999999999999999999999999999999975432 222 25689999999999999999999999999999999999


Q ss_pred             CCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCC-CCC
Q 035615          158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNA-LTH  220 (223)
Q Consensus       158 ~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~-~t~  220 (223)
                      +|++|||+|||+++|+++|+++|++|++.+|++|||++||++++.  .+|||++|||++| .|.
T Consensus       201 ~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~--~~~nviiTPHi~g~~t~  262 (303)
T PRK06436        201 KGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET--NPDNVILSPHVAGGMSG  262 (303)
T ss_pred             CCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC--CCCCEEECCccccccCH
Confidence            999999999999999999999999999999999999999986654  6899999999876 443

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.5e-58  Score=425.80  Aligned_cols=217  Identities=27%  Similarity=0.408  Sum_probs=201.1

Q ss_pred             CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCcccc
Q 035615            2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKL   77 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l   77 (223)
                      .+|+||||+++++|+||||+++++++||    +|++|+.+||||++++||+++|+++.+++.+++|.|....  ..+.+|
T Consensus        61 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~--~~g~~l  138 (526)
T PRK13581         61 AAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKK--FMGVEL  138 (526)
T ss_pred             hCCCCeEEEECCcccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccC--cccccc
Confidence            3799999999999999999999999998    6999999999999999999999999999999999997532  246789


Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      .||||||||+|+||+.+|+++++|||+|++|||+....    .++. ..+++|++++||+|++|+|+|++|+++|+++.|
T Consensus       139 ~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l  217 (526)
T PRK13581        139 YGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVE-LVSLDELLARADFITLHTPLTPETRGLIGAEEL  217 (526)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCE-EEcHHHHHhhCCEEEEccCCChHhhcCcCHHHH
Confidence            99999999999999999999999999999999865322    1232 348999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      ++||+|++|||+|||++||++||+++|++|+|+||+||||++||++++|||++|||++|||+|+.|.+
T Consensus       218 ~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e  285 (526)
T PRK13581        218 AKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAE  285 (526)
T ss_pred             hcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHH
Confidence            99999999999999999999999999999999999999999999887799999999999999999865

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-58  Score=393.86  Aligned_cols=218  Identities=25%  Similarity=0.396  Sum_probs=202.6

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      .-+||+|++.++|+||+|++++.++||    +|.+|+.++||+++++++++.|++.+....+++|+|.+..  ..+.+|.
T Consensus        68 ~~~lkvVgrag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~--~~G~el~  145 (406)
T KOG0068|consen   68 AGGLKVVGRAGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVK--YLGWELR  145 (406)
T ss_pred             cCCeEEEEecccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecc--eeeeEEe
Confidence            457999999999999999999999998    7999999999999999999999999999999999998653  2689999


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhc
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE  155 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~  155 (223)
                      |||+||+|+|+||+.+|++++.+||+|++||+-.....   ......+++|+++.||||++|+|+||+|++++|++.|++
T Consensus       146 GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~  225 (406)
T KOG0068|consen  146 GKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAK  225 (406)
T ss_pred             ccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHH
Confidence            99999999999999999999999999999987654332   123568999999999999999999999999999999999


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC---CCCCCCCceEEccCCCCCCCCC
Q 035615          156 LGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP---KEPLRLDNIVLLPCQNALTHWE  222 (223)
Q Consensus       156 mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~---~~l~~~~nv~~TPH~a~~t~~~  222 (223)
                      ||+|..+||++||++||++||++||++|+++||++|||+.||+..   ..|.+||||++|||+|++|.|.
T Consensus       226 mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EA  295 (406)
T KOG0068|consen  226 MKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEA  295 (406)
T ss_pred             hhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHH
Confidence            999999999999999999999999999999999999999999874   4899999999999999999873

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=1.5e-57  Score=393.38  Aligned_cols=220  Identities=39%  Similarity=0.649  Sum_probs=205.6

Q ss_pred             CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCcccc
Q 035615            2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKL   77 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l   77 (223)
                      +.|+||+|.++++|+||||+++++++||    +|+.++.+|||++++++|.+.|++..+++.+++|.|.....+..+..+
T Consensus        81 ~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~  160 (336)
T KOG0069|consen   81 LSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDL  160 (336)
T ss_pred             cCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccc
Confidence            5799999999999999999999999999    699999999999999999999999999999999999666666788999


Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc----ccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF----PYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~----~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      .||||||+|+|+||+.+|++|++||+.+.|++|++.+.+..    ....++++++.+||+|++|||+|++|+++||++.|
T Consensus       161 ~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~  240 (336)
T KOG0069|consen  161 EGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFI  240 (336)
T ss_pred             cCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHH
Confidence            99999999999999999999999998899999987654321    23569999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      .+||+|++|||++||.++|++++++||++|+|.+|++|||++||.+++||+.++|+++|||+|+.|.+
T Consensus       241 ~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHigs~t~~  308 (336)
T KOG0069|consen  241 EKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHIGSATLE  308 (336)
T ss_pred             HhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEecccccCcHH
Confidence            99999999999999999999999999999999999999999999667799999999999999999854

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=2e-57  Score=397.93  Aligned_cols=217  Identities=18%  Similarity=0.341  Sum_probs=197.0

Q ss_pred             ccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCC
Q 035615            4 YQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGG   79 (223)
Q Consensus         4 p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g   79 (223)
                      |+||+|++.++|+||||+++++++||    +|++++++||||+++++|++.|++..+++.+++|.|.+... ..+.+|+|
T Consensus        68 ~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~-~~~~~l~g  146 (330)
T PRK12480         68 YGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAE-IMSKPVKN  146 (330)
T ss_pred             cCceEEEecccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccc-cCccccCC
Confidence            38999999999999999999999998    69999999999999999999999999999999997653221 24678999


Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc-ccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF-PYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGK  158 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~-~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~  158 (223)
                      ++|||||+|.||+.+|++|++||++|++||+++...... ....++++++++||+|++|+|.+++|+++++++.|+.||+
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~  226 (330)
T PRK12480        147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKK  226 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCC
Confidence            999999999999999999999999999999987543322 2345899999999999999999999999999999999999


Q ss_pred             CcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCC----------C----CCCCCCCceEEccCCCCCCCC
Q 035615          159 GGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNV----------P----KEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       159 ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~----------~----~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      |++|||+|||.+||++||+++|++|+|+||+||||++||+.          +    .|||++|||++|||+|++|.+
T Consensus       227 gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~  303 (330)
T PRK12480        227 GAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDE  303 (330)
T ss_pred             CcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHH
Confidence            99999999999999999999999999999999999999962          1    269999999999999999975

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=7.5e-56  Score=392.05  Aligned_cols=198  Identities=24%  Similarity=0.326  Sum_probs=181.5

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      +|+||||+++++|+||||.++++++||    +||+|+.+||||+++++|++.|+.                    +.+|.
T Consensus        56 ~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~--------------------g~~L~  115 (378)
T PRK15438         56 GKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD--------------------GFSLH  115 (378)
T ss_pred             CCCCeEEEECcccccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC--------------------CCCcC
Confidence            689999999999999999999999999    699999999999999999999861                    24689


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChh----hhhccCHHHHh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQ----THHIINKDVMA  154 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~----t~~li~~~~l~  154 (223)
                      |+||||||+|+||+.+|+++++|||+|++||+..........+.++++++++||+|++|+|+|++    |+++++++.|+
T Consensus       116 gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~  195 (378)
T PRK15438        116 DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIR  195 (378)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHh
Confidence            99999999999999999999999999999997644322222457899999999999999999996    99999999999


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615          155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       155 ~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      +||+|++|||+|||++||++||+++|++|++.+|+||||++||.++.+||..++ ++|||+||+|.+
T Consensus       196 ~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e  261 (378)
T PRK15438        196 SLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLE  261 (378)
T ss_pred             cCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHH
Confidence            999999999999999999999999999999999999999999987778988766 999999999865

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=3e-55  Score=384.94  Aligned_cols=218  Identities=18%  Similarity=0.282  Sum_probs=196.5

Q ss_pred             Ccc--ceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccc
Q 035615            3 CYQ--TNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFK   76 (223)
Q Consensus         3 ~p~--Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~   76 (223)
                      +|+  ||||++.++|+||||+++++++||    +||+++.+||||+++++|++.|++..+++.+++|.|.+... ..+++
T Consensus        65 ~~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~-~~~~~  143 (332)
T PRK08605         65 LNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPP-ILSRS  143 (332)
T ss_pred             hhhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccc-cccce
Confidence            676  999999999999999999999998    69999999999999999999999999999999998853321 24678


Q ss_pred             cCCCEEEEEecChHHHHHHHHH-HhCCCEEEEEcCCCCCCC--CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRL-QAFGFIISYNSRRKRPSV--LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l-~~~G~~V~~~~~~~~~~~--~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      |+|++|||||+|+||+.+|++| ++||++|++||++.....  ......++++++++||+|++|+|.+++|+++++++.+
T Consensus       144 l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l  223 (332)
T PRK08605        144 IKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLF  223 (332)
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHH
Confidence            9999999999999999999999 789999999998765321  2223458999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCC--CCC------------CCCCCCceEEccCCCCCC
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPN--VPK------------EPLRLDNIVLLPCQNALT  219 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~--~~~------------~l~~~~nv~~TPH~a~~t  219 (223)
                      +.||+|++|||++||.++|+++|+++|++|+|.||+||||+.||+  +.+            +||++|||++|||+|++|
T Consensus       224 ~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t  303 (332)
T PRK08605        224 KHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYT  303 (332)
T ss_pred             hcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccH
Confidence            999999999999999999999999999999999999999999983  221            499999999999999998


Q ss_pred             CC
Q 035615          220 HW  221 (223)
Q Consensus       220 ~~  221 (223)
                      .+
T Consensus       304 ~e  305 (332)
T PRK08605        304 DA  305 (332)
T ss_pred             HH
Confidence            65

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=6.2e-55  Score=387.15  Aligned_cols=198  Identities=20%  Similarity=0.308  Sum_probs=182.7

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      .|+||||++.++|+||||.++++++||    +||+|+.+||||+++++|++.|+                    .+.+|.
T Consensus        56 ~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~--------------------~g~~l~  115 (381)
T PRK00257         56 GSRVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER--------------------EGVDLA  115 (381)
T ss_pred             CCCCeEEEECCccccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc--------------------cCCCcC
Confidence            489999999999999999999999999    69999999999999999999885                    135699


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCCh----hhhhccCHHHHh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTE----QTHHIINKDVMA  154 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~----~t~~li~~~~l~  154 (223)
                      |+||||||+|+||+.+|+++++|||+|++||+......+...+.++++++++||+|++|+|+|+    .|+++|+++.|+
T Consensus       116 gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~  195 (381)
T PRK00257        116 ERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLA  195 (381)
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHh
Confidence            9999999999999999999999999999999865433333346789999999999999999998    599999999999


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615          155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       155 ~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      +||+|++|||+|||++||++||+++|++|++.+|+||||++||.++.+||.. |+++|||+||+|.+
T Consensus       196 ~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e  261 (381)
T PRK00257        196 SLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLD  261 (381)
T ss_pred             cCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHH
Confidence            9999999999999999999999999999999999999999999877789986 99999999999965

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=2.4e-52  Score=336.89  Aligned_cols=173  Identities=33%  Similarity=0.541  Sum_probs=152.4

Q ss_pred             HHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----Cc
Q 035615           43 IGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LF  118 (223)
Q Consensus        43 ~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~  118 (223)
                      ++++|++.|++..+++.++++.|... ....+++++|+||||||+|+||+.+|+++++|||+|++|||+.....    ..
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W~~~-~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~   79 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEWASR-ERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG   79 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBHHHH-TTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCCCCC-cCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccccc
Confidence            58999999999999999999999211 12367899999999999999999999999999999999999987533    12


Q ss_pred             ccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCC
Q 035615          119 PYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPN  198 (223)
Q Consensus       119 ~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~  198 (223)
                      ..+.+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||++|||++||+
T Consensus        80 ~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~  159 (178)
T PF02826_consen   80 VEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPL  159 (178)
T ss_dssp             EEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSS
T ss_pred             ceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCC
Confidence            24679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-CCCCCCceEEccCCC
Q 035615          199 VPK-EPLRLDNIVLLPCQN  216 (223)
Q Consensus       199 ~~~-~l~~~~nv~~TPH~a  216 (223)
                      +.+ |||++|||++|||+|
T Consensus       160 ~~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  160 PADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             STTHHHHTSTTEEEESS-T
T ss_pred             CCCChHHcCCCEEEeCccC
Confidence            876 999999999999997

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.95  E-value=5.3e-28  Score=208.52  Aligned_cols=209  Identities=22%  Similarity=0.325  Sum_probs=184.6

Q ss_pred             cceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCC-----CCcc
Q 035615            5 QTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDY-----PLGF   75 (223)
Q Consensus         5 ~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~-----~~~~   75 (223)
                      -||++...+.|+|++|+.++.+.+|    .|+..-+.+|+-++..+|.++|+-....+..++|.|......     .-..
T Consensus        95 alRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~  174 (435)
T KOG0067|consen   95 ALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQALREGTCTQGLEQVREAACGLA  174 (435)
T ss_pred             hhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhhhcccceeechhhhhhhhhccc
Confidence            3799999999999999999999998    488889999999999999999999999999999998643211     1234


Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcccccChhhhhcCCcEEEEeccCChhhhhccCHH
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~  151 (223)
                      .++|.+.|++|+|+.|++++.++++||+.|+.||+.....    .+.....++.+++.++|.+++|+.+++.++++|+.-
T Consensus       175 ~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~  254 (435)
T KOG0067|consen  175 RIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDF  254 (435)
T ss_pred             cccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchhhhhccceeeecccCcccccccccc
Confidence            5789999999999999999999999999999999875432    244455679999999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCC--CCCCCCCCceEEccCCCCCCC
Q 035615          152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNV--PKEPLRLDNIVLLPCQNALTH  220 (223)
Q Consensus       152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~--~~~l~~~~nv~~TPH~a~~t~  220 (223)
                      ..++|++|+.++|++||.++|+++|.++|+.|++.+++       |..  ..||.+.||.++|||.+++++
T Consensus       255 tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~e  318 (435)
T KOG0067|consen  255 TIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKDAPNLICTPHTAWYSE  318 (435)
T ss_pred             cceeecccceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccCCCCCCCCcccchhhH
Confidence            99999999999999999999999999999999999888       222  248999999999999998875

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.87  E-value=4.1e-21  Score=173.70  Aligned_cols=163  Identities=17%  Similarity=0.199  Sum_probs=129.3

Q ss_pred             ccccchhHhHHH-HHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEe
Q 035615           12 ILSEYQNWLKQL-IKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVR   86 (223)
Q Consensus        12 ~~aG~d~id~~~-~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG   86 (223)
                      +++|+..+-..+ ....+|    +|++++.+++|+++++++++..      ..++.+          +..+.|++++|+|
T Consensus       198 TttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d------~~~R~~----------~~~LaGKtVgVIG  261 (476)
T PTZ00075        198 TTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLID------GIFRAT----------DVMIAGKTVVVCG  261 (476)
T ss_pred             chHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHH------HHHHhc----------CCCcCCCEEEEEC
Confidence            667776653321 112344    6999999999999999999883      333333          2468999999999


Q ss_pred             cChHHHHHHHHHHhCCCEEEEEcCCCCCCC----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEE
Q 035615           87 LGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMI  162 (223)
Q Consensus        87 ~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~l  162 (223)
                      +|.||+.+|+++++||++|+++++++....    ......+++++++.+|+|++|+    .+.++|+++.|+.||+|++|
T Consensus       262 ~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpGAiL  337 (476)
T PTZ00075        262 YGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNNAIV  337 (476)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCCcEE
Confidence            999999999999999999999977754431    1122457999999999999985    37889999999999999999


Q ss_pred             EEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC
Q 035615          163 INVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK  201 (223)
Q Consensus       163 IN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~  201 (223)
                      ||+||+   |++.+.++|+++.    ++|+++.||....
T Consensus       338 INvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~~  369 (476)
T PTZ00075        338 GNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVDR  369 (476)
T ss_pred             EEcCCC---chHHhHHHHHhcC----CceeecccCCCCe
Confidence            999999   7888889988754    7899999996543

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.78  E-value=8.4e-19  Score=151.24  Aligned_cols=149  Identities=17%  Similarity=0.198  Sum_probs=118.4

Q ss_pred             ceEEEEccccchhHhHH-HHHhcCC----------CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCc
Q 035615            6 TNLYACILSEYQNWLKQ-LIKQKSI----------AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLG   74 (223)
Q Consensus         6 Lk~i~~~~aG~d~id~~-~~~~~~i----------~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~   74 (223)
                      ++.++...+|+++.+++ .++++||          .+.+|+.++||+++++++..                       .+
T Consensus        90 ~~~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~-----------------------~~  146 (287)
T TIGR02853        90 TKGHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH-----------------------TD  146 (287)
T ss_pred             cCCCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh-----------------------cC
Confidence            34577789999999998 9999998          25789999999999988752                       12


Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccc--cccChhhhhcCCcEEEEeccCChhhhhc
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFP--YCANVYDLAVNSDVLVVCCALTEQTHHI  147 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~--~~~~l~el~~~aDiv~~~~p~t~~t~~l  147 (223)
                      .+++|++++|+|+|.||+.+|+.|+++|++|.+++|+++...     +..  ...+++++++++|+|++|+|.+     +
T Consensus       147 ~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----i  221 (287)
T TIGR02853       147 FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----V  221 (287)
T ss_pred             CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----H
Confidence            368899999999999999999999999999999999875421     111  2346778899999999999853     6


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCce
Q 035615          148 INKDVMAELGKGGMIINVGRGAL-IDEKEMLQFLVQGDIN  186 (223)
Q Consensus       148 i~~~~l~~mk~ga~lIN~arg~~-vd~~al~~aL~~~~i~  186 (223)
                      ++++.++.||+++++||++..+- +|.    ++.++..+.
T Consensus       222 i~~~~l~~~k~~aliIDlas~Pg~tdf----~~Ak~~G~~  257 (287)
T TIGR02853       222 LTADVLSKLPKHAVIIDLASKPGGTDF----EYAKKRGIK  257 (287)
T ss_pred             hCHHHHhcCCCCeEEEEeCcCCCCCCH----HHHHHCCCE
Confidence            78889999999999999998543 344    344455554

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PLN02494 adenosylhomocysteinase

Probab=99.71  E-value=3.2e-17  Score=148.24  Aligned_cols=116  Identities=16%  Similarity=0.230  Sum_probs=101.1

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      .+.|++++|+|+|.||+.+|+++++||++|+++++++....     ++. ..+++++++.+|+|+.+    ..+++++++
T Consensus       251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~-vv~leEal~~ADVVI~t----TGt~~vI~~  325 (477)
T PLN02494        251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ-VLTLEDVVSEADIFVTT----TGNKDIIMV  325 (477)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe-eccHHHHHhhCCEEEEC----CCCccchHH
Confidence            47899999999999999999999999999999988775421     232 34788999999999873    357889999


Q ss_pred             HHHhcCCCCcEEEEcCC-CcccCHHHHHHH--HHcCCceEEEeeCCCCCC
Q 035615          151 DVMAELGKGGMIINVGR-GALIDEKEMLQF--LVQGDINGVGLDVFENDP  197 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~ar-g~~vd~~al~~a--L~~~~i~~a~lDV~~~EP  197 (223)
                      +.|+.||+|++|+|+|| +..||+++|.++  ++.+.++ +.+|+|+.|-
T Consensus       326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d  374 (477)
T PLN02494        326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD  374 (477)
T ss_pred             HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence            99999999999999999 689999999998  9999998 9999998864

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.63  E-value=1.2e-15  Score=136.82  Aligned_cols=115  Identities=16%  Similarity=0.241  Sum_probs=99.2

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      .+.|++|+|+|+|.||+.+|++++++|++|+++++++.+..     ++ ...+++++++.+|+|+.+..    +.++++.
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~-~v~~leeal~~aDVVItaTG----~~~vI~~  266 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGF-RVMTMEEAAKIGDIFITATG----NKDVIRG  266 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCC-EeCCHHHHHhcCCEEEECCC----CHHHHHH
Confidence            47899999999999999999999999999999987764421     23 34567889999999987653    6788999


Q ss_pred             HHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCceEEEeeCCCC
Q 035615          151 DVMAELGKGGMIINVGRGAL-IDEKEMLQFLVQGDINGVGLDVFEN  195 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~-vd~~al~~aL~~~~i~~a~lDV~~~  195 (223)
                      +.+..||+|++|+|+||+.+ ||.++|.+++.+.+..+..+|+|.-
T Consensus       267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~  312 (406)
T TIGR00936       267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL  312 (406)
T ss_pred             HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence            99999999999999999998 9999999999887777899999874

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.61  E-value=1.9e-15  Score=130.84  Aligned_cols=88  Identities=20%  Similarity=0.258  Sum_probs=75.6

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      ..|+||||||||+|+||+++|++|+++|++|+++++......     ++ ...+++|++++||+|++|+|+ ++++++++
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~-~v~sl~Eaak~ADVV~llLPd-~~t~~V~~   89 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGF-EVMSVSEAVRTAQVVQMLLPD-EQQAHVYK   89 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCC-EECCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence            469999999999999999999999999999998876543321     33 245899999999999999996 67899999


Q ss_pred             HHHHhcCCCCcEEEE
Q 035615          150 KDVMAELGKGGMIIN  164 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN  164 (223)
                      ++.++.||+|++|+-
T Consensus        90 ~eil~~MK~GaiL~f  104 (335)
T PRK13403         90 AEVEENLREGQMLLF  104 (335)
T ss_pred             HHHHhcCCCCCEEEE
Confidence            999999999997764

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.59  E-value=1.5e-15  Score=120.64  Aligned_cols=111  Identities=20%  Similarity=0.366  Sum_probs=90.0

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccC-HHHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN-KDVM  153 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~-~~~l  153 (223)
                      ++|||||+|.||+.+|++|...|++|.+|||++++.+     +.....++.|+++++|+|++++|..++++.++. .+.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~   81 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL   81 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence            6899999999999999999999999999999875532     455678999999999999999998888877762 2278


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV  192 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV  192 (223)
                      +.+++|.++||++....-+...+.+.+++..+.  ++|.
T Consensus        82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda  118 (163)
T PF03446_consen   82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA  118 (163)
T ss_dssp             GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred             hccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence            889999999999999999999999999988876  7774

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.59  E-value=6.3e-15  Score=126.23  Aligned_cols=116  Identities=18%  Similarity=0.260  Sum_probs=102.6

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC------CCcccccChhhhhcCCcEEEEeccCChhhhhccC--HH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS------VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN--KD  151 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~--~~  151 (223)
                      ++||+||+|.||..||++|...|++|.+|||++.+.      .+.....+..|+.+.+|+|++++|..++.+.++.  ..
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            479999999999999999999999999999998772      2556677889999999999999999999998874  57


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee--CCCCCC
Q 035615          152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD--VFENDP  197 (223)
Q Consensus       152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD--V~~~EP  197 (223)
                      .++.+|+|+++||+++.+......+.+.++++.+.  ++|  |....+
T Consensus        81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lDAPVsGg~~  126 (286)
T COG2084          81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLDAPVSGGVP  126 (286)
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEecCccCCch
Confidence            88999999999999999999999999999999987  777  444443

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.52  E-value=1.1e-13  Score=119.95  Aligned_cols=135  Identities=14%  Similarity=0.158  Sum_probs=106.0

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCCC----C------CCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSIA----K------QADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYP   72 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i~----~------~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~   72 (223)
                      +|+.+.+ +.+.+.++++ +.+.++||+    .      -.|+.++||.++...+.   +                    
T Consensus        91 l~~~~~v-~~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~---~--------------------  145 (296)
T PRK08306         91 TPEHCTI-FSGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIE---H--------------------  145 (296)
T ss_pred             cCCCCEE-EEecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHH---h--------------------
Confidence            5677644 3688889987 788899983    2      24889999998776442   1                    


Q ss_pred             CccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccc--cccChhhhhcCCcEEEEeccCChhhh
Q 035615           73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFP--YCANVYDLAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~--~~~~l~el~~~aDiv~~~~p~t~~t~  145 (223)
                      .+..+.|++++|+|+|.+|+.+++.|+++|++|.+++|++....     ++.  ...++.+.++++|+|+.++|.     
T Consensus       146 ~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----  220 (296)
T PRK08306        146 TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----  220 (296)
T ss_pred             CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----
Confidence            12347899999999999999999999999999999999865321     222  234677889999999999883     


Q ss_pred             hccCHHHHhcCCCCcEEEEcCC
Q 035615          146 HIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      .+++++.++.|++++++||++.
T Consensus       221 ~~i~~~~l~~~~~g~vIIDla~  242 (296)
T PRK08306        221 LVLTKEVLSKMPPEALIIDLAS  242 (296)
T ss_pred             hhhhHHHHHcCCCCcEEEEEcc
Confidence            4678899999999999999985

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.46  E-value=2.1e-13  Score=117.67  Aligned_cols=109  Identities=16%  Similarity=0.237  Sum_probs=91.6

Q ss_pred             EEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhcc-C-HHHH
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHII-N-KDVM  153 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li-~-~~~l  153 (223)
                      +|||||+|.||+.+|+.+...|++|.+|||+++...     +.....+..+++++||+|++|+|.++.++.++ . ...+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            489999999999999999999999999999875432     33345678899999999999999887777764 3 3467


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD  191 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD  191 (223)
                      ..++++.++||+++....+.+.+.+.++++.+.  ++|
T Consensus        81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~--~~~  116 (291)
T TIGR01505        81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID--YLD  116 (291)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEe
Confidence            788999999999999999999999999987766  555

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.46  E-value=2.4e-13  Score=117.50  Aligned_cols=118  Identities=17%  Similarity=0.262  Sum_probs=95.6

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccC--HHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN--KDV  152 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~--~~~  152 (223)
                      ++|||||+|.||+.+|+.+...|++|.+|||++....     +.....++++++++||+|++++|.+..++.++.  ...
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~   82 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI   82 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence            5899999999999999999999999999999875432     233456788999999999999998888777763  346


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCC
Q 035615          153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP  197 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP  197 (223)
                      ++.++++.++||+++......+++.+.+.+..+...---|+..+|
T Consensus        83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~  127 (296)
T PRK11559         83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP  127 (296)
T ss_pred             hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence            778899999999999999888899999988777633333554444

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.45  E-value=3.7e-13  Score=116.66  Aligned_cols=111  Identities=12%  Similarity=0.183  Sum_probs=94.6

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccC--HHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN--KDV  152 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~--~~~  152 (223)
                      ++|||||+|.||..+|+.|...|++|.+|||++....     +.....+..+++++||+|++|+|....++.++.  ...
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i   81 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV   81 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence            4799999999999999999999999999999876432     333456888999999999999998777777663  346


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615          153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV  192 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV  192 (223)
                      ++.++++.++||++++.....+.+.+.+.+..+.  ++|.
T Consensus        82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda  119 (296)
T PRK15461         82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV  119 (296)
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence            7778999999999999999999999999998887  6774

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.45  E-value=4.6e-13  Score=116.22  Aligned_cols=109  Identities=20%  Similarity=0.305  Sum_probs=93.0

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcC---CcEEEEeccCChhhhhccCHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVN---SDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~---aDiv~~~~p~t~~t~~li~~~  151 (223)
                      ++|||||+|+||+.+|++|...|++|.+|||++....     +.....+.++++++   +|+|++++|..+.++.++ .+
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~   79 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KD   79 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HH
Confidence            3799999999999999999999999999999865422     33445688888876   699999999887888877 45


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee
Q 035615          152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD  191 (223)
Q Consensus       152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD  191 (223)
                      .+..+++|.++||+++....+...+.+.+++..+.  ++|
T Consensus        80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd  117 (299)
T PRK12490         80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD  117 (299)
T ss_pred             HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence            77788999999999999999999999999988876  677

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.40  E-value=6.9e-13  Score=104.52  Aligned_cols=99  Identities=16%  Similarity=0.327  Sum_probs=72.7

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-----CCcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      ..+.||++.|+|||.+|+.+|+.|+++|++|.+++..|...     +++. ..+++++++++|+++.+..    ...++.
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~-v~~~~~a~~~adi~vtaTG----~~~vi~   93 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE-VMTLEEALRDADIFVTATG----NKDVIT   93 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E-EE-HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE-ecCHHHHHhhCCEEEECCC----CccccC
Confidence            35889999999999999999999999999999999887543     2333 4689999999999988764    467889


Q ss_pred             HHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 035615          150 KDVMAELGKGGMIINVGRGAL-IDEKEMLQ  178 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~arg~~-vd~~al~~  178 (223)
                      .+.|.+||+|+++.|++.-.. +|-+.|.+
T Consensus        94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~  123 (162)
T PF00670_consen   94 GEHFRQMKDGAILANAGHFDVEIDVDALEA  123 (162)
T ss_dssp             HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred             HHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence            999999999999999997665 56666554

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.39  E-value=1.7e-12  Score=112.67  Aligned_cols=110  Identities=22%  Similarity=0.297  Sum_probs=93.2

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcC---CcEEEEeccCChhhhhccCHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVN---SDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~---aDiv~~~~p~t~~t~~li~~~  151 (223)
                      ++|||||+|.||+.+|+.|...|++|.+|||+++...     +.....+.+++++.   +|+|++++|..+.++.++ ..
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~   79 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE   79 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence            4799999999999999999999999999999875432     33445678888875   699999999877777776 46


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615          152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV  192 (223)
Q Consensus       152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV  192 (223)
                      .+..++++.++||++++.......+.+.+++..+.  ++|.
T Consensus        80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da  118 (301)
T PRK09599         80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV  118 (301)
T ss_pred             HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence            77889999999999999999999999999999887  6674

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.36  E-value=3.3e-12  Score=115.30  Aligned_cols=98  Identities=18%  Similarity=0.297  Sum_probs=83.3

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      .+.|++++|+|+|.||+.+|++++++|++|+++++++.+..     ++ ...+++++++.+|+|+.+.    .+.++|+.
T Consensus       209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~-~v~~l~eal~~aDVVI~aT----G~~~vI~~  283 (425)
T PRK05476        209 LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGF-RVMTMEEAAELGDIFVTAT----GNKDVITA  283 (425)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCC-EecCHHHHHhCCCEEEECC----CCHHHHHH
Confidence            47899999999999999999999999999999998875432     22 2457889999999998765    35678999


Q ss_pred             HHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 035615          151 DVMAELGKGGMIINVGRGAL-IDEKEMLQ  178 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~-vd~~al~~  178 (223)
                      +.+..||+|++++|+|+... +|.++|.+
T Consensus       284 ~~~~~mK~GailiNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        284 EHMEAMKDGAILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             HHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence            99999999999999999887 78887765

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.35  E-value=2.9e-12  Score=117.75  Aligned_cols=116  Identities=15%  Similarity=0.186  Sum_probs=98.3

Q ss_pred             EEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------Ccc---cccChhhhhcC---CcEEEEeccCChhhh
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------LFP---YCANVYDLAVN---SDVLVVCCALTEQTH  145 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~---~~~~l~el~~~---aDiv~~~~p~t~~t~  145 (223)
                      +|||||+|.||+.||++|...|++|.+|||++++.+         +..   ...+++|+++.   +|+|++++|..+.++
T Consensus         8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~   87 (493)
T PLN02350          8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD   87 (493)
T ss_pred             CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence            699999999999999999999999999999875432         211   35678888875   999999999999999


Q ss_pred             hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCC
Q 035615          146 HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP  197 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP  197 (223)
                      .++ ...++.+++|.++||+++...-+...+.+.+++..+.....=|+..++
T Consensus        88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~  138 (493)
T PLN02350         88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE  138 (493)
T ss_pred             HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence            888 568888999999999999999999999999999999844444665554

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.33  E-value=6.6e-12  Score=108.73  Aligned_cols=111  Identities=16%  Similarity=0.188  Sum_probs=92.2

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcccccChhhhhcCCcEEEEeccCChhhhhccCH--HHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK--DVM  153 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~--~~l  153 (223)
                      ++|||||+|+||+.+++.|...|++|.+|++++...    .+.....+..+++++||+|++++|..+..+.++..  ..+
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~   80 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT   80 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence            379999999999999999999999999999876421    13344567888999999999999988777776632  356


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV  192 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV  192 (223)
                      +.+++|.++|+++....-....+.+.+++..+.  ++|.
T Consensus        81 ~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda  117 (292)
T PRK15059         81 KASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA  117 (292)
T ss_pred             ccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence            778999999999999999999999999988776  7774

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.27  E-value=1.4e-11  Score=104.95  Aligned_cols=113  Identities=16%  Similarity=0.236  Sum_probs=97.5

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccC--
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN--  149 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~--  149 (223)
                      -+.++||+||+|.||..|+..|...|++|++|||+....+     ++....+..|+.+.||+|+.++|.....+.++.  
T Consensus        33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~  112 (327)
T KOG0409|consen   33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK  112 (327)
T ss_pred             cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence            3578999999999999999999999999999999987654     455578999999999999999999888888763  


Q ss_pred             HHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCceEEEee
Q 035615          150 KDVMAELGKGGMI-INVGRGALIDEKEMLQFLVQGDINGVGLD  191 (223)
Q Consensus       150 ~~~l~~mk~ga~l-IN~arg~~vd~~al~~aL~~~~i~~a~lD  191 (223)
                      ...|+.++++... |+.+.-+..-...|.++++....+  ++|
T Consensus       113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vD  153 (327)
T KOG0409|consen  113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVD  153 (327)
T ss_pred             CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEe
Confidence            3477777888777 899999988888999999998776  676

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.27  E-value=1.4e-11  Score=107.86  Aligned_cols=91  Identities=20%  Similarity=0.253  Sum_probs=73.5

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC------CCcccccChhhhhcCCcEEEEeccCChhhhhcc
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS------VLFPYCANVYDLAVNSDVLVVCCALTEQTHHII  148 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li  148 (223)
                      ..|++++|||||+|+||+++|+.|+.+|++|+++++.....      .++. ..+.++++++||+|++++|.+.. ..++
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~-~~s~~eaa~~ADVVvLaVPd~~~-~~V~   90 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFE-VLTVAEAAKWADVIMILLPDEVQ-AEVY   90 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCe-eCCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence            45899999999999999999999999999998776654322      1232 34889999999999999996654 6777


Q ss_pred             CHHHHhcCCCCcEEEEcCCC
Q 035615          149 NKDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       149 ~~~~l~~mk~ga~lIN~arg  168 (223)
                      +++.+..|++|++| -++.|
T Consensus        91 ~~~I~~~Lk~g~iL-~~a~G  109 (330)
T PRK05479         91 EEEIEPNLKEGAAL-AFAHG  109 (330)
T ss_pred             HHHHHhcCCCCCEE-EECCC
Confidence            67788899999988 55555

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.26  E-value=3.5e-11  Score=104.44  Aligned_cols=109  Identities=22%  Similarity=0.316  Sum_probs=88.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhh---hcCCcEEEEeccCChhhhhccCHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDL---AVNSDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el---~~~aDiv~~~~p~t~~t~~li~~~  151 (223)
                      ++|||||+|.||..+|+.|...|++|.+|||+++...     +.....+++++   +..+|+|++++|.. .++.++ ++
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~   78 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE   78 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence            4799999999999999999999999999999876432     22223455554   45789999999976 777777 46


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615          152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV  192 (223)
Q Consensus       152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV  192 (223)
                      ....+++|.++||++.+...+...+.+.+++..+.  ++|.
T Consensus        79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda  117 (298)
T TIGR00872        79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDC  117 (298)
T ss_pred             HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEec
Confidence            77788999999999999989999999999888776  5664

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.26  E-value=3.3e-11  Score=110.50  Aligned_cols=114  Identities=18%  Similarity=0.246  Sum_probs=96.6

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------C--cccccChhhhhc---CCcEEEEeccCChhhh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------L--FPYCANVYDLAV---NSDVLVVCCALTEQTH  145 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~--~~~~~~l~el~~---~aDiv~~~~p~t~~t~  145 (223)
                      .+|||||+|.||+.+|++|...|++|.+|||+++..+         +  ...+.+++|+++   ++|+|++++|..+.++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            4799999999999999999999999999999876521         2  123568888886   5899999999888888


Q ss_pred             hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee--CCCCC
Q 035615          146 HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD--VFEND  196 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD--V~~~E  196 (223)
                      .++ ++.+..+++|.++||++.+..-|...+.+.+.+..+.  ++|  |...+
T Consensus        82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~--fldapVSGG~  131 (470)
T PTZ00142         82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGIL--YLGMGVSGGE  131 (470)
T ss_pred             HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEcCCCCCCH
Confidence            888 5678889999999999999999999999999999998  555  45444

>PLN02858 fructose-bisphosphate aldolase

Probab=99.26  E-value=2.2e-11  Score=123.64  Aligned_cols=113  Identities=19%  Similarity=0.179  Sum_probs=98.8

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhcc--CH
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHII--NK  150 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li--~~  150 (223)
                      +.++||+||+|.||..||++|...|++|.+|||++.+..     ++....+..|+.++||+|++|+|..+..+.++  ..
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~   82 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE   82 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence            467899999999999999999999999999999876543     45567899999999999999999988888876  35


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC--ceEEEeeC
Q 035615          151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGD--INGVGLDV  192 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~--i~~a~lDV  192 (223)
                      ..++.+++|.++|++|+...-....+.+.+++..  +.  ++|.
T Consensus        83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~--~lDa  124 (1378)
T PLN02858         83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIF--LVDA  124 (1378)
T ss_pred             hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceE--EEEc
Confidence            6788899999999999999999999999998877  54  7774

>PLN02712 arogenate dehydrogenase

Probab=99.23  E-value=2.4e-11  Score=115.70  Aligned_cols=109  Identities=18%  Similarity=0.269  Sum_probs=85.1

Q ss_pred             CccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcccccChhhhhc-CCcEEEEeccCChhhhhc
Q 035615           73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFPYCANVYDLAV-NSDVLVVCCALTEQTHHI  147 (223)
Q Consensus        73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~-~aDiv~~~~p~t~~t~~l  147 (223)
                      .+.++.+++|||||+|.||+.+|+.++.+|++|++|+++....    .+.....++++++. .+|+|++|+| ...+..+
T Consensus       363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~v  441 (667)
T PLN02712        363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKV  441 (667)
T ss_pred             ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHH
Confidence            4667899999999999999999999999999999999875321    13333567888775 5999999999 4577777


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 035615          148 INKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQ  182 (223)
Q Consensus       148 i~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~  182 (223)
                      +.+-....||+|++++|++.++-...+.+.+.+..
T Consensus       442 i~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~  476 (667)
T PLN02712        442 LKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ  476 (667)
T ss_pred             HHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence            76544446899999999999985555555555544

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.22  E-value=5.7e-11  Score=107.03  Aligned_cols=99  Identities=15%  Similarity=0.277  Sum_probs=81.6

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      ..+.|++|+|+|+|.||+.+++.++++|++|+++++++.+..     ++ ...++++.++.+|+|+.+..    +.++++
T Consensus       198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~-~~~~~~e~v~~aDVVI~atG----~~~~i~  272 (413)
T cd00401         198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGY-EVMTMEEAVKEGDIFVTTTG----NKDIIT  272 (413)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCC-EEccHHHHHcCCCEEEECCC----CHHHHH
Confidence            347899999999999999999999999999999988765432     33 23456788899999988653    456788


Q ss_pred             HHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 035615          150 KDVMAELGKGGMIINVGRGAL-IDEKEMLQ  178 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~arg~~-vd~~al~~  178 (223)
                      ...+..||+|++++|+|++.+ +|...|..
T Consensus       273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            888999999999999999876 77777664

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02858 fructose-bisphosphate aldolase

Probab=99.20  E-value=5.5e-11  Score=120.75  Aligned_cols=112  Identities=20%  Similarity=0.160  Sum_probs=95.9

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhcc--CHH
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHII--NKD  151 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li--~~~  151 (223)
                      .++|||||+|.||..||++|...|++|.+|||++....     +.....+..+++++||+|++|+|..++++.++  +..
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g  403 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG  403 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence            47899999999999999999999999999999875432     33345788999999999999999888888887  345


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHc--CCceEEEeeC
Q 035615          152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQ--GDINGVGLDV  192 (223)
Q Consensus       152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~--~~i~~a~lDV  192 (223)
                      .++.+++|.++||++....-....+.+.+++  ..+.  ++|.
T Consensus       404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lDA  444 (1378)
T PLN02858        404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVDA  444 (1378)
T ss_pred             HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEEc
Confidence            7888999999999999999999999999988  5665  6664

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.20  E-value=5.1e-11  Score=102.83  Aligned_cols=107  Identities=12%  Similarity=0.160  Sum_probs=88.5

Q ss_pred             EEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccC--HHHHhcC
Q 035615           84 IVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN--KDVMAEL  156 (223)
Q Consensus        84 IiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~--~~~l~~m  156 (223)
                      |||+|.||..+|+.|...|++|.+|||+++...     +.....++.++++++|+|++|+|..+..+.++.  ...+..+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            689999999999999999999999999875432     333456888999999999999997777777662  4566788


Q ss_pred             CCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615          157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV  192 (223)
Q Consensus       157 k~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV  192 (223)
                      +++.++||++....-....+.+.+++..+.  ++|.
T Consensus        81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vda  114 (288)
T TIGR01692        81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMDA  114 (288)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEC
Confidence            999999999988877788888888887776  6773

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PLN02256 arogenate dehydrogenase

Probab=99.17  E-value=2.5e-10  Score=99.40  Aligned_cols=135  Identities=16%  Similarity=0.182  Sum_probs=90.8

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcccccChhhhh-cCCcEEEEeccCChhhhhccCHH
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFPYCANVYDLA-VNSDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~-~~aDiv~~~~p~t~~t~~li~~~  151 (223)
                      -++++|+|||+|.||+.+++.++..|++|++++++....    .+.....+.++++ ..+|+|++|+|. ..+..++.+-
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~l  112 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRSL  112 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHhh
Confidence            357899999999999999999999999999999875321    1233345777776 479999999994 3566766443


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCCCCCCceEEccCC
Q 035615          152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP-KEPLRLDNIVLLPCQ  215 (223)
Q Consensus       152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~-~~l~~~~nv~~TPH~  215 (223)
                      ....+++++++++++..+-+..+++.+.+..+. .  .+=....-+... ...+.-.+++++|..
T Consensus       113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~-~--~V~~HPmaG~e~~~~~~~~~~~~~~~~~  174 (304)
T PLN02256        113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEF-D--ILCTHPMFGPESGKGGWAGLPFVYDKVR  174 (304)
T ss_pred             hhhccCCCCEEEecCCchHHHHHHHHHhCCCCC-e--EEecCCCCCCCCCccccCCCeEEEecce
Confidence            256689999999999977665666666654321 1  222222211111 134555567777653

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.16  E-value=1.2e-10  Score=106.70  Aligned_cols=112  Identities=17%  Similarity=0.255  Sum_probs=92.0

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----C------cccccChhhhh---cCCcEEEEeccCChhhhhcc
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----L------FPYCANVYDLA---VNSDVLVVCCALTEQTHHII  148 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~------~~~~~~l~el~---~~aDiv~~~~p~t~~t~~li  148 (223)
                      |||||+|.||+.+|++|...|++|.+|||+++..+    .      .....++++++   +++|+|++++|..+.++.++
T Consensus         2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi   81 (467)
T TIGR00873         2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVI   81 (467)
T ss_pred             EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHH
Confidence            89999999999999999999999999999876432    1      22345677765   46899999999888888887


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee--CCCCC
Q 035615          149 NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD--VFEND  196 (223)
Q Consensus       149 ~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD--V~~~E  196 (223)
                       .+.+..+++|.++||++....-|.....+.+.+..+.  ++|  |...+
T Consensus        82 -~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~--fvdapVsGG~  128 (467)
T TIGR00873        82 -NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGIL--FVGSGVSGGE  128 (467)
T ss_pred             -HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCE--EEcCCCCCCH
Confidence             4677889999999999999999999999999998887  555  44443

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.10  E-value=4.2e-10  Score=98.08  Aligned_cols=83  Identities=20%  Similarity=0.282  Sum_probs=69.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh-cC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA-EL  156 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~-~m  156 (223)
                      .+++|+|||+|.||+.+|+.|...|++|.+|+|+..        .+++++++++|+|++++|. +..+.+++ +... .+
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------~~~~~~~~~advvi~~vp~-~~~~~v~~-~l~~~~~   72 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------LSLAAVLADADVIVSAVSM-KGVRPVAE-QVQALNL   72 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------CCHHHHHhcCCEEEEECCh-HHHHHHHH-HHHHhcC
Confidence            367899999999999999999999999999998753        4688899999999999996 46777763 3323 47


Q ss_pred             CCCcEEEEcCCCcc
Q 035615          157 GKGGMIINVGRGAL  170 (223)
Q Consensus       157 k~ga~lIN~arg~~  170 (223)
                      ++++++|++++|-.
T Consensus        73 ~~~~ivi~~s~gi~   86 (308)
T PRK14619         73 PPETIIVTATKGLD   86 (308)
T ss_pred             CCCcEEEEeCCccc
Confidence            88999999988543

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.05  E-value=7e-10  Score=100.76  Aligned_cols=132  Identities=9%  Similarity=0.071  Sum_probs=93.0

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----Cc----------------ccccChhhhhcCCcEEEEec
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LF----------------PYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~----------------~~~~~l~el~~~aDiv~~~~  138 (223)
                      .++|||||+|.||..+|..+.. |++|++||+++.+.+    +.                ....+..+.+++||++++|+
T Consensus         6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V   84 (425)
T PRK15182          6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV   84 (425)
T ss_pred             CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence            4789999999999999999877 799999998876432    11                12334345689999999999


Q ss_pred             cCC------hhhhhcc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH-Hc-CCce-E-EEeeCCCCCCCCCC----C
Q 035615          139 ALT------EQTHHII--NKDVMAELGKGGMIINVGRGALIDEKEMLQFL-VQ-GDIN-G-VGLDVFENDPNVPK----E  202 (223)
Q Consensus       139 p~t------~~t~~li--~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL-~~-~~i~-~-a~lDV~~~EP~~~~----~  202 (223)
                      |..      ++...++  .+...+.+++|.++|+.|+-.+-..+.+++.+ ++ .++. + ...=+|.+||..+.    .
T Consensus        85 ptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~  164 (425)
T PRK15182         85 PTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHR  164 (425)
T ss_pred             CCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccccc
Confidence            954      2334444  24567789999999999999988777655443 33 1232 1 11125778998653    5


Q ss_pred             CCCCCceEE
Q 035615          203 PLRLDNIVL  211 (223)
Q Consensus       203 l~~~~nv~~  211 (223)
                      +...|+++.
T Consensus       165 ~~~~~riv~  173 (425)
T PRK15182        165 LTNIKKITS  173 (425)
T ss_pred             ccCCCeEEE
Confidence            777777765

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.05  E-value=8.6e-10  Score=100.54  Aligned_cols=128  Identities=20%  Similarity=0.362  Sum_probs=92.2

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      ++|+||| +|.||+.+|+.|+..|++|.+++|++....      +.....+..+.+.++|+|++++|. ..+..++ ++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl-~~l   78 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI-KEV   78 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH-HHH
Confidence            4799998 899999999999999999999998765421      223345777889999999999995 3455555 456


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCC--CCCCCCCCCceEEccCC
Q 035615          153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPN--VPKEPLRLDNIVLLPCQ  215 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~--~~~~l~~~~nv~~TPH~  215 (223)
                      ...+++++++++++.......+++.+.+..+ ..  ++..   -|.  +..+++.-..+++||+-
T Consensus        79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~~--~V~~---HPmaGp~~~~~~g~~~il~p~~  137 (437)
T PRK08655         79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEG-VE--ILPT---HPMFGPRTPSLKGQVVILTPTE  137 (437)
T ss_pred             HhhCCCCCEEEEcccccHHHHHHHHHhcCCC-CE--EEEc---CCCCCCCCcccCCCEEEEecCC
Confidence            6778999999999986655555666555432 22  2332   233  22256777789999974

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.05  E-value=7.7e-10  Score=96.70  Aligned_cols=92  Identities=20%  Similarity=0.250  Sum_probs=68.4

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCC-CCCC-----CCcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRR-KRPS-----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~-~~~~-----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      |+||+|||||+|+||+++|+.|+.+|++|+++++. .+..     .++. ..+..+++++||+|++++|.... ...+.+
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~-~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~   78 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFK-VGTVEEAIPQADLIMNLLPDEVQ-HEVYEA   78 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCE-ECCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence            57999999999999999999999999998765443 2221     1232 34688889999999999994423 334456


Q ss_pred             HHHhcCCCCcEEEEcCCCccc
Q 035615          151 DVMAELGKGGMIINVGRGALI  171 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~v  171 (223)
                      +....++++. +|.++-|--+
T Consensus        79 ei~~~l~~g~-iVs~aaG~~i   98 (314)
T TIGR00465        79 EIQPLLKEGK-TLGFSHGFNI   98 (314)
T ss_pred             HHHhhCCCCc-EEEEeCCccH
Confidence            6777788886 7888777544

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.01  E-value=2.2e-09  Score=92.29  Aligned_cols=129  Identities=21%  Similarity=0.328  Sum_probs=88.6

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC--CC-----Cccc--ccCh-hhhhcCCcEEEEeccCChhhhhcc
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP--SV-----LFPY--CANV-YDLAVNSDVLVVCCALTEQTHHII  148 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~--~~-----~~~~--~~~l-~el~~~aDiv~~~~p~t~~t~~li  148 (223)
                      .++|+|+|+|.||+.+|+.++..|+.|.+++++...  ..     +...  ..+. .+....+|+|++++|-. .|..++
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l   81 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVL   81 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHH
Confidence            478999999999999999999999987555444432  21     1111  1232 56778899999999954 555655


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCC----CCCCCCCCceEEccCC
Q 035615          149 NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNV----PKEPLRLDNIVLLPCQ  215 (223)
Q Consensus       149 ~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~----~~~l~~~~nv~~TPH~  215 (223)
                       ++....+|+|+++++++.-+----+++.+.+.+.. .     +...-|..    ..+++..-.+++||.-
T Consensus        82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~-----~vg~HPM~G~~~~~~lf~~~~~vltp~~  145 (279)
T COG0287          82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-R-----FVGGHPMFGPEADAGLFENAVVVLTPSE  145 (279)
T ss_pred             -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-e-----eEecCCCCCCcccccccCCCEEEEcCCC
Confidence             45555799999999999877655556555554432 2     22233432    2378888889999964

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=99.01  E-value=6.5e-10  Score=87.43  Aligned_cols=86  Identities=16%  Similarity=0.238  Sum_probs=61.9

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC------CCcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS------VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      |++|+|+|||||..|++.|..|+..|++|++-.|...+.      .++ ...+.+|.++++|+|++.+|.. ....+..+
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf-~v~~~~eAv~~aDvV~~L~PD~-~q~~vy~~   79 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGF-EVMSVAEAVKKADVVMLLLPDE-VQPEVYEE   79 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT--ECCEHHHHHHC-SEEEE-S-HH-HHHHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCC-eeccHHHHHhhCCEEEEeCChH-HHHHHHHH
Confidence            689999999999999999999999999998777665521      233 3568999999999999999943 33455667


Q ss_pred             HHHhcCCCCcEEEE
Q 035615          151 DVMAELGKGGMIIN  164 (223)
Q Consensus       151 ~~l~~mk~ga~lIN  164 (223)
                      +....||+|..|+=
T Consensus        80 ~I~p~l~~G~~L~f   93 (165)
T PF07991_consen   80 EIAPNLKPGATLVF   93 (165)
T ss_dssp             HHHHHS-TT-EEEE
T ss_pred             HHHhhCCCCCEEEe
Confidence            88889999997763

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PLN02712 arogenate dehydrogenase

Probab=98.98  E-value=1.2e-09  Score=104.28  Aligned_cols=105  Identities=17%  Similarity=0.323  Sum_probs=76.8

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcccccChhhhh-cCCcEEEEeccCChhhhhccC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFPYCANVYDLA-VNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~-~~aDiv~~~~p~t~~t~~li~  149 (223)
                      .+-+.++|||||+|.||+.+|+.++.+|++|.+|+++....    .+.....++++++ .++|+|++|+|. ..+..++.
T Consensus        48 ~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~  126 (667)
T PLN02712         48 DNTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLK  126 (667)
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHH
Confidence            34456799999999999999999999999999999874321    1333456777865 569999999994 46777776


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 035615          150 KDVMAELGKGGMIINVGRGALIDEKEMLQFL  180 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~arg~~vd~~al~~aL  180 (223)
                      +-.+..++++++|+|++.-+..--+++.+.+
T Consensus       127 ~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l  157 (667)
T PLN02712        127 SLPLQRLKRNTLFVDVLSVKEFAKNLLLDYL  157 (667)
T ss_pred             hhhhhcCCCCeEEEECCCCcHHHHHHHHHhc
Confidence            5444668999999999755532223344444

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.98  E-value=1.8e-09  Score=92.81  Aligned_cols=129  Identities=17%  Similarity=0.206  Sum_probs=83.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cc-ccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LF-PYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~-~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      ++|+|||+|.||+.+|+.|+..|++|.+|+++++...     +. ....+..+.++++|+|++++|.. ....++ ++..
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~-~~~~~~-~~l~   78 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIG-LLLPPS-EQLI   78 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHHH
Confidence            4799999999999999999999999999998765322     11 11222235688999999999943 333333 5666


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCC---CCCCCC-C---CCCCCCCceEEccCCC
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVF---ENDPNV-P---KEPLRLDNIVLLPCQN  216 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~---~~EP~~-~---~~l~~~~nv~~TPH~a  216 (223)
                      ..+++++++++++.-+.-    ..+++......  ++...   ..|... .   ..|+.-.++++||+-.
T Consensus        79 ~~l~~~~ii~d~~Svk~~----~~~~~~~~~~~--~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~  142 (279)
T PRK07417         79 PALPPEAIVTDVGSVKAP----IVEAWEKLHPR--FVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTEN  142 (279)
T ss_pred             HhCCCCcEEEeCcchHHH----HHHHHHHhhCC--ceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCC
Confidence            778999999999875532    23333322112  23322   222110 0   1266667889999754

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.97  E-value=5.4e-10  Score=100.73  Aligned_cols=101  Identities=19%  Similarity=0.221  Sum_probs=74.6

Q ss_pred             CCCCCCCCCC-ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCC------CCC-----CCcccccChhhhhcCC
Q 035615           64 LWAKTGDYPL-GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRK------RPS-----VLFPYCANVYDLAVNS  131 (223)
Q Consensus        64 ~w~~~~~~~~-~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~------~~~-----~~~~~~~~l~el~~~a  131 (223)
                      -|.+. .|+. ...|+||||+|||+|++|++-|..|+..|++|.+--|..      +..     .++ ...+++|++++|
T Consensus        21 ~~~r~-ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF-~v~~~~Ea~~~A   98 (487)
T PRK05225         21 FMDRD-EFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF-KVGTYEELIPQA   98 (487)
T ss_pred             ecchh-hccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC-ccCCHHHHHHhC
Confidence            46543 3322 356999999999999999988888888888877433321      111     233 346899999999


Q ss_pred             cEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCc
Q 035615          132 DVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       132 Div~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~  169 (223)
                      |+|++.+|++ . .+.+.++.++.||+|++|. .|.|=
T Consensus        99 DvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHGF  133 (487)
T PRK05225         99 DLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHGF  133 (487)
T ss_pred             CEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCCc
Confidence            9999999988 3 6667799999999999765 44443

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.96  E-value=1.1e-09  Score=94.81  Aligned_cols=99  Identities=12%  Similarity=0.108  Sum_probs=75.8

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C------------cccccChhhhhcCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L------------FPYCANVYDLAVNS  131 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~------------~~~~~~l~el~~~a  131 (223)
                      ++|+|||+|.||..+|+.+...|++|++||+++....                +            .....+..+.++.|
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a   84 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA   84 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence            6899999999999999999999999999998764421                0            01122233568999


Q ss_pred             cEEEEeccCChhhhhccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHH
Q 035615          132 DVLVVCCALTEQTHHIINKDVMAELGKGGMII-NVGRGALIDEKEMLQFLV  181 (223)
Q Consensus       132 Div~~~~p~t~~t~~li~~~~l~~mk~ga~lI-N~arg~~vd~~al~~aL~  181 (223)
                      |+|+.++|..++.+..+-++..+.++++++|+ |+|.-.   ...+.+.+.
T Consensus        85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~  132 (295)
T PLN02545         85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQ  132 (295)
T ss_pred             CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcC
Confidence            99999999998888877677777789999887 776664   444555554

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.96  E-value=2.1e-09  Score=93.73  Aligned_cols=98  Identities=19%  Similarity=0.322  Sum_probs=83.6

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      .+.||++.|.|||..|+.+|++++++|++|++..-.|-...     ++ .+..+++..+.+|+++.+.-    ++++|..
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf-~V~~m~~Aa~~gDifiT~TG----nkdVi~~  280 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGF-RVMTMEEAAKTGDIFVTATG----NKDVIRK  280 (420)
T ss_pred             eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCc-EEEEhHHhhhcCCEEEEccC----CcCccCH
Confidence            47899999999999999999999999999999877665432     33 35688999999999998764    6889999


Q ss_pred             HHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 035615          151 DVMAELGKGGMIINVGRGAL-IDEKEMLQ  178 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~-vd~~al~~  178 (223)
                      +.|..||.|+++-|.+.-.. ||.+.|.+
T Consensus       281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~  309 (420)
T COG0499         281 EHFEKMKDGAILANAGHFDVEIDVAGLEE  309 (420)
T ss_pred             HHHHhccCCeEEecccccceeccHHHHHH
Confidence            99999999999999998776 67777664

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.95  E-value=3.2e-09  Score=91.60  Aligned_cols=110  Identities=12%  Similarity=0.164  Sum_probs=80.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCC-----------------------------cccccChhhhhcC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVL-----------------------------FPYCANVYDLAVN  130 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~-----------------------------~~~~~~l~el~~~  130 (223)
                      ++|+|||.|.||..+|..+...|++|++||++++....                             .....++++.+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            57999999999999999999999999999987654211                             1123567788999


Q ss_pred             CcEEEEeccCChhhhhccCHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCceEEEeeCC
Q 035615          131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMI-INVGRGALIDEKEMLQFLVQGDINGVGLDVF  193 (223)
Q Consensus       131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~l-IN~arg~~vd~~al~~aL~~~~i~~a~lDV~  193 (223)
                      ||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.-.+   ..+.+.++. .-+..++..+
T Consensus        82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~  141 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF  141 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence            99999999987766555445566778999877 78877554   456655543 2223466655

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.95  E-value=6e-10  Score=80.29  Aligned_cols=85  Identities=25%  Similarity=0.405  Sum_probs=62.1

Q ss_pred             EEEEEecChHHHHHHHHHHhCC---CEEE-EEcCCCCCCC------Cccccc-ChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFG---FIIS-YNSRRKRPSV------LFPYCA-NVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G---~~V~-~~~~~~~~~~------~~~~~~-~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      ||||||+|+||+++++.+...|   .+|. +++|+++...      +..... +..|+++++|+|++++|.. ....++ 
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~-   78 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLPEVL-   78 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHH-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHHHHH-
Confidence            6999999999999999999999   8888 5588876542      222233 7889999999999999833 333443 


Q ss_pred             HHHHhcCCCCcEEEEcCCC
Q 035615          150 KDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~arg  168 (223)
                      ++. ....++.++|++.-|
T Consensus        79 ~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   79 SEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             HHH-HHHHTTSEEEEESTT
T ss_pred             HHH-hhccCCCEEEEeCCC
Confidence            333 556788999988654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.93  E-value=4.5e-09  Score=90.86  Aligned_cols=80  Identities=19%  Similarity=0.267  Sum_probs=67.9

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.++.||+|+|||.| .||+.+|.+|...|++|.+|++...         ++.++.++||+|+++++..    +.+.+.+
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~---------~l~e~~~~ADIVIsavg~~----~~v~~~~  220 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST---------DAKALCRQADIVVAAVGRP----RLIDADW  220 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC---------CHHHHHhcCCEEEEecCCh----hcccHhh
Confidence            447999999999996 9999999999999999999976542         7889999999999999843    3555554


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 035615          153 MAELGKGGMIINVGRGA  169 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~  169 (223)
                         +|+|+++||+|--.
T Consensus       221 ---ik~GaiVIDvgin~  234 (301)
T PRK14194        221 ---LKPGAVVIDVGINR  234 (301)
T ss_pred             ---ccCCcEEEEecccc
Confidence               79999999999544

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.92  E-value=2.6e-08  Score=88.84  Aligned_cols=121  Identities=16%  Similarity=0.191  Sum_probs=83.1

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHh-CCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH-
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQA-FGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM-  153 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~-~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l-  153 (223)
                      +...||+|||+ |.||+.+|+.|+. +|.+|+++|+...      ...++++.+++||+|++|+|.. .+..++. +.. 
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------~~~~~~~~v~~aDlVilavPv~-~~~~~l~-~l~~   73 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------GSLDPATLLQRADVLIFSAPIR-HTAALIE-EYVA   73 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------ccCCHHHHhcCCCEEEEeCCHH-HHHHHHH-HHhh
Confidence            45689999999 9999999999996 5899999998522      1246778899999999999944 4455542 232 


Q ss_pred             --hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC---CCCCCCCceEEccC
Q 035615          154 --AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP---KEPLRLDNIVLLPC  214 (223)
Q Consensus       154 --~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~---~~l~~~~nv~~TPH  214 (223)
                        ..+|+++++++++.-+--    +.+++.....     ++-..-|..-   ..+++-.++++||.
T Consensus        74 ~~~~l~~~~iVtDVgSvK~~----i~~~~~~~~~-----~fVG~HPMaG~E~s~lf~g~~~iltp~  130 (370)
T PRK08818         74 LAGGRAAGQLWLDVTSIKQA----PVAAMLASQA-----EVVGLHPMTAPPKSPTLKGRVMVVCEA  130 (370)
T ss_pred             hhcCCCCCeEEEECCCCcHH----HHHHHHhcCC-----CEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence              237999999999986632    2222222211     2233344421   25677778899986

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.92  E-value=6.1e-09  Score=88.66  Aligned_cols=99  Identities=17%  Similarity=0.290  Sum_probs=74.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC----EEEEE-cCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF----IISYN-SRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~----~V~~~-~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      ++|||||+|+||+++++.|...|+    +|+++ +|+++...     +.....+..+++++||+|++++| .+..+.++ 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl-   78 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL-   78 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence            579999999999999999998887    88888 88765432     33345677888999999999997 55566666 


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 035615          150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQ  182 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~  182 (223)
                      .+....++++.++|++.-|  +..+.+.+.+..
T Consensus        79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~  109 (266)
T PLN02688         79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG  109 (266)
T ss_pred             HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence            3455667889999988665  466666665543

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.92  E-value=7.3e-09  Score=92.20  Aligned_cols=129  Identities=20%  Similarity=0.176  Sum_probs=86.7

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------Ccc--cccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------LFP--YCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~--~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      ++|+|||+|.||+++|+.++..|++|.+|++++....       +..  ...++++++++||+|++++|. +.+..++. 
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl~-   78 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALLA-   78 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHHH-
Confidence            4799999999999999999999998888877654321       111  134677889999999999995 35666663 


Q ss_pred             HHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC----------CCCCCCCceEEccCCC
Q 035615          151 DVMA-ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP----------KEPLRLDNIVLLPCQN  216 (223)
Q Consensus       151 ~~l~-~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~----------~~l~~~~nv~~TPH~a  216 (223)
                      +... .+++++++++++.-+.-..+++.+.+. ....  +++.+   |...          ..|+.-...++||+-.
T Consensus        79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~-~~~~--~ig~H---PMaG~e~sG~~aa~~~lf~g~~~il~~~~~  149 (359)
T PRK06545         79 ELADLELKPGVIVTDVGSVKGAILAEAEALLG-DLIR--FVGGH---PMAGSHKSGVAAARADLFENAPWVLTPDDH  149 (359)
T ss_pred             HHhhcCCCCCcEEEeCccccHHHHHHHHHhcC-CCCe--EEeeC---CcCcCchhhHHHhcHHHHCCCcEEEecCCC
Confidence            3433 478999999998877544444443322 2222  44432   3221          1466666788888643

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.90  E-value=1.2e-08  Score=83.70  Aligned_cols=104  Identities=20%  Similarity=0.250  Sum_probs=81.7

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------CcccccChhhhhc-CCcEEEEeccCChhhhhc
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFPYCANVYDLAV-NSDVLVVCCALTEQTHHI  147 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~el~~-~aDiv~~~~p~t~~t~~l  147 (223)
                      .+++||+++|+|+|+||+.+|+.|..+|++|+++|+++....      +.. ..+.++++. +||+++.|..     .++
T Consensus        24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~-~v~~~~l~~~~~Dv~vp~A~-----~~~   97 (200)
T cd01075          24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGAT-VVAPEEIYSVDADVFAPCAL-----GGV   97 (200)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE-EEcchhhccccCCEEEeccc-----ccc
Confidence            468999999999999999999999999999999998765322      222 224456664 7999986654     468


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          148 INKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       148 i~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      ++++.++.|+. .+++.-+.+.+-| ..-.+.|+++.+.
T Consensus        98 I~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi~  134 (200)
T cd01075          98 INDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGIL  134 (200)
T ss_pred             cCHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCCE
Confidence            99999999974 5888988988876 5567778888776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.89  E-value=9.3e-09  Score=85.37  Aligned_cols=111  Identities=22%  Similarity=0.292  Sum_probs=94.2

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhh---hcCCcEEEEeccCChhhhhccCHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDL---AVNSDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el---~~~aDiv~~~~p~t~~t~~li~~~  151 (223)
                      +++|.||+|+||..+++++...|.+|++||+++...+     ++....+++|+   +...-+|.+.+|...-|..+| ++
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~   79 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD   79 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence            5799999999999999999999999999999886432     44445677766   456789999999887777777 45


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCC
Q 035615          152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVF  193 (223)
Q Consensus       152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~  193 (223)
                      +-..|.+|-++|+-+...--|....++.|+++.|.  ++||=
T Consensus        80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~G  119 (300)
T COG1023          80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVG  119 (300)
T ss_pred             HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEecc
Confidence            77788999999999999999999999999999997  89984

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.89  E-value=3.4e-09  Score=94.69  Aligned_cols=91  Identities=13%  Similarity=0.210  Sum_probs=72.5

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------Cc------ccccChhhhhcCCcEEEEeccCC-h
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LF------PYCANVYDLAVNSDVLVVCCALT-E  142 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~------~~~~~l~el~~~aDiv~~~~p~t-~  142 (223)
                      .+.++++.|+|.|.+|+.+++.++.+|++|.++|+++...+      +.      ....++.+.++++|+|+.+++.+ .
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~  243 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA  243 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence            36788899999999999999999999999999998754321      11      01134677889999999998643 2


Q ss_pred             hhhhccCHHHHhcCCCCcEEEEcC
Q 035615          143 QTHHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       143 ~t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      .+..+++++.++.||+++++||++
T Consensus       244 ~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       244 KAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             CCCcCcCHHHHhcCCCCCEEEEEe
Confidence            345678999999999999999987

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.88  E-value=9.3e-09  Score=89.52  Aligned_cols=134  Identities=14%  Similarity=0.224  Sum_probs=86.2

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC-----Cc--ccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV-----LF--PYCANVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-----~~--~~~~~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      .++|+|||+|.||+.+++.++..|.  +|++|++++....     +.  ....++++.++++|+|++++|.. .+..++ 
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~-   83 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA-   83 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH-
Confidence            4789999999999999999998885  8999999765322     11  12346778889999999999953 333333 


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCC---CCCCCC---C-CCCCCCCceEEccCCCC
Q 035615          150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVF---ENDPNV---P-KEPLRLDNIVLLPCQNA  217 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~---~~EP~~---~-~~l~~~~nv~~TPH~a~  217 (223)
                      ++....++++.++++++....--.+++.+.+.. .+.  ++..+   ..|-..   . .+|+.-.++++||+-++
T Consensus        84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~  155 (307)
T PRK07502         84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVH--FIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT  155 (307)
T ss_pred             HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCe--EEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC
Confidence            445567899999999976543222233333222 222  33332   222111   1 15666677889987543

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.87  E-value=1.3e-08  Score=92.29  Aligned_cols=104  Identities=12%  Similarity=0.130  Sum_probs=76.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCC----cc--cccChhhh---------------hcCCcEEEEec
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVL----FP--YCANVYDL---------------AVNSDVLVVCC  138 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~----~~--~~~~l~el---------------~~~aDiv~~~~  138 (223)
                      ++|+|||+|.||..+|..|...|++|++||+++...+.    ..  ....++++               ++.||+|++|+
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v   83 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV   83 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence            68999999999999999999999999999988764321    00  11233333               34799999999


Q ss_pred             cCC------hhhhhcc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          139 ALT------EQTHHII--NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       139 p~t------~~t~~li--~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      |..      ++...+.  -+...+.+++|+++|+.|.-..-..+.+...+.+.
T Consensus        84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~  136 (415)
T PRK11064         84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA  136 (415)
T ss_pred             CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            953      1222222  24567778999999999998888788887777654

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.85  E-value=1.4e-08  Score=88.93  Aligned_cols=111  Identities=13%  Similarity=0.087  Sum_probs=83.7

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------------------CcccccChhhhhcCCcEE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------------------LFPYCANVYDLAVNSDVL  134 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------------------~~~~~~~l~el~~~aDiv  134 (223)
                      ++|+|||.|.||..+|..+...|++|..||++++...                         ......++++.++.||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            6899999999999999999999999999998764211                         012346788999999999


Q ss_pred             EEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCC
Q 035615          135 VVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVF  193 (223)
Q Consensus       135 ~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~  193 (223)
                      +-++|.+.+.+..+-++.-+.+++++ +|.++.. -+...++.+.++. .-+..++--|
T Consensus        88 iEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS-~l~~s~la~~~~~-p~R~~g~Hff  143 (321)
T PRK07066         88 QESAPEREALKLELHERISRAAKPDA-IIASSTS-GLLPTDFYARATH-PERCVVGHPF  143 (321)
T ss_pred             EECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCC-ccCHHHHHHhcCC-cccEEEEecC
Confidence            99999998888877788888899998 4544444 3466777777754 2222354434

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.83  E-value=2.4e-08  Score=89.37  Aligned_cols=121  Identities=12%  Similarity=0.127  Sum_probs=83.6

Q ss_pred             cchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           35 LPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        35 ~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      ....++-.+-.++..+|++.      ++..+...       .-..++|+||| +|.||+.+|+.|+..|+.|.+|+++..
T Consensus        67 ~~~~~~~i~~~i~~~s~~~q------~~~~~~~~-------~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~  133 (374)
T PRK11199         67 PPDLIEDVLRRVMRESYSSE------NDKGFKTL-------NPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW  133 (374)
T ss_pred             CHHHHHHHHHHHHHHHHHHh------HHhccccc-------CcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc
Confidence            34445666666666666432      22222211       11458999999 999999999999999999999998531


Q ss_pred             CCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 035615          114 PSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQF  179 (223)
Q Consensus       114 ~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~a  179 (223)
                              .+.++++++||+|++|+|... +..++ ++... +++|+++++++.-+..-..++.+.
T Consensus       134 --------~~~~~~~~~aDlVilavP~~~-~~~~~-~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~  188 (374)
T PRK11199        134 --------DRAEDILADAGMVIVSVPIHL-TEEVI-ARLPP-LPEDCILVDLTSVKNAPLQAMLAA  188 (374)
T ss_pred             --------hhHHHHHhcCCEEEEeCcHHH-HHHHH-HHHhC-CCCCcEEEECCCccHHHHHHHHHh
Confidence                    356788999999999999653 45555 34444 899999999987654333344443

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.82  E-value=2e-08  Score=80.26  Aligned_cols=82  Identities=21%  Similarity=0.362  Sum_probs=70.1

Q ss_pred             cccCCCEEEEEecChH-HHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           75 FKLGGMQVGIVRLGNI-GSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      .+|.|+++.|||.|.| |..+++.|...|++|.+.+|+.         .++.+.++++|+|+.+++..   + +|+++. 
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~---------~~l~~~l~~aDiVIsat~~~---~-ii~~~~-  105 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT---------KNLKEHTKQADIVIVAVGKP---G-LVKGDM-  105 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc---------hhHHHHHhhCCEEEEcCCCC---c-eecHHH-
Confidence            3589999999999996 8889999999999999998763         46788999999999998733   3 788775 


Q ss_pred             hcCCCCcEEEEcCCCcccC
Q 035615          154 AELGKGGMIINVGRGALID  172 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd  172 (223)
                        ++++.++||++...-+|
T Consensus       106 --~~~~~viIDla~prdvd  122 (168)
T cd01080         106 --VKPGAVVIDVGINRVPD  122 (168)
T ss_pred             --ccCCeEEEEccCCCccc
Confidence              57899999999988777

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.81  E-value=2.6e-08  Score=77.64  Aligned_cols=106  Identities=17%  Similarity=0.157  Sum_probs=78.4

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCC-CEEEEEcCCCCCCC------Cc----ccccChhhhhcCCcEEEEeccCChh-
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFG-FIISYNSRRKRPSV------LF----PYCANVYDLAVNSDVLVVCCALTEQ-  143 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~------~~----~~~~~l~el~~~aDiv~~~~p~t~~-  143 (223)
                      ++.+++++|+|.|.||+.+++.+...| .+|.+++|+++...      ..    ....+.+++++++|+|++++|.... 
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~   95 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP   95 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence            356899999999999999999999886 68999998865432      11    1345677778999999999996643 


Q ss_pred             hhh-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          144 THH-IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       144 t~~-li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      ... .+..   ..++++.+++|++..+...  .+.+.+++..+.
T Consensus        96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~  134 (155)
T cd01065          96 GDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGAK  134 (155)
T ss_pred             CCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCc
Confidence            222 2332   2368999999998875443  788888776654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.81  E-value=3.3e-08  Score=85.29  Aligned_cols=127  Identities=7%  Similarity=0.086  Sum_probs=85.2

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------------------------------CcccccChhhhhc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------------------------------LFPYCANVYDLAV  129 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------------------------------~~~~~~~l~el~~  129 (223)
                      ++|+|||.|.||..+|..+...|++|..||++++...                              ......++++.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            5899999999999999999999999999998764211                              0012467788899


Q ss_pred             CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCce
Q 035615          130 NSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNI  209 (223)
Q Consensus       130 ~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv  209 (223)
                      .||+|+.++|...+...-+-++..+.++++++|+..+.+  +....+.+.++... +..++--|       .|.+..+.+
T Consensus        84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~~-r~vg~Hf~-------~p~~~~~lv  153 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRPE-KFLALHFA-------NEIWKNNTA  153 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCcc-cEEEEcCC-------CCCCcCCeE
Confidence            999999999966554444335566677888888543333  34456666654322 22344322       245556677


Q ss_pred             EEccCCC
Q 035615          210 VLLPCQN  216 (223)
Q Consensus       210 ~~TPH~a  216 (223)
                      .+.|+-.
T Consensus       154 evv~~~~  160 (287)
T PRK08293        154 EIMGHPG  160 (287)
T ss_pred             EEeCCCC
Confidence            7776543

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.81  E-value=1.5e-08  Score=87.56  Aligned_cols=110  Identities=11%  Similarity=0.142  Sum_probs=77.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhcC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAVN  130 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~  130 (223)
                      ++|+|||.|.||..+|..+...|++|.+||++++...                +             .....+++ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            6899999999999999999999999999998764321                1             11234554 4789


Q ss_pred             CcEEEEeccCChhhhhccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615          131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMII-NVGRGALIDEKEMLQFLVQGDINGVGLDVFE  194 (223)
Q Consensus       131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lI-N~arg~~vd~~al~~aL~~~~i~~a~lDV~~  194 (223)
                      ||+|+.++|...+.+..+-++..+.++++++|+ |+|.-.   ...+.+.+... -+..++..+.
T Consensus        84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~~-~r~~g~h~~~  144 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDRP-ERFIGIHFMN  144 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCCc-ccEEEeeccC
Confidence            999999999876655444356777789999998 665544   34577666432 1223555554

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.80  E-value=1.8e-08  Score=88.39  Aligned_cols=98  Identities=18%  Similarity=0.194  Sum_probs=74.9

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------C------cccccChhhhhcCCcEEEEecc
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------L------FPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------~------~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      .++|+|||.|.||..+|..|...|++|.+|+|+++..+             +      .....++++.++.+|+|++++|
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            46899999999999999999999999999999754211             1      1234578888899999999999


Q ss_pred             CChhhhhccCHHHHhcCCCCcEEEEcCCC-cccC--HHHHHHHHHc
Q 035615          140 LTEQTHHIINKDVMAELGKGGMIINVGRG-ALID--EKEMLQFLVQ  182 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~mk~ga~lIN~arg-~~vd--~~al~~aL~~  182 (223)
                      .. .+     ++.++.++++.++|+++.| ..-+  ...+.+.+.+
T Consensus        84 ~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         84 SK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             hH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            55 22     5566778999999999997 3332  4456666654

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.79  E-value=2.5e-08  Score=85.71  Aligned_cols=100  Identities=12%  Similarity=0.157  Sum_probs=73.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCC----CEEEEEcCCCCC-CC------CcccccChhhhhcCCcEEEEeccCChhhhh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFG----FIISYNSRRKRP-SV------LFPYCANVYDLAVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~-~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~  146 (223)
                      +.++|+|||+|+||+++++.|...|    .+|++++|+... ..      +.....+..+++++||+|++++|. .....
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p-~~~~~   80 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKP-KDVAE   80 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCH-HHHHH
Confidence            3579999999999999999998887    678999986532 11      333456778889999999999983 34444


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 035615          147 IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLV  181 (223)
Q Consensus       147 li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~  181 (223)
                      ++ .+....++++.++|++.-|-  ..+.+.+.+.
T Consensus        81 vl-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~  112 (279)
T PRK07679         81 AL-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQ  112 (279)
T ss_pred             HH-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence            44 44555678889999986553  5556666554

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.78  E-value=3.1e-08  Score=85.72  Aligned_cols=79  Identities=19%  Similarity=0.341  Sum_probs=66.4

Q ss_pred             cccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEc-CCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           75 FKLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNS-RRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        75 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~-~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      .+++||+|+||| .|.||+.+|.+|...|+.|.+|+ |+.          ++++++++||+|+++++...    ++.+.+
T Consensus       154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------~l~e~~~~ADIVIsavg~~~----~v~~~~  219 (296)
T PRK14188        154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------DLPAVCRRADILVAAVGRPE----MVKGDW  219 (296)
T ss_pred             CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------CHHHHHhcCCEEEEecCChh----hcchhe
Confidence            368999999999 99999999999999999999995 543          57899999999999998543    455443


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 035615          153 MAELGKGGMIINVGRGAL  170 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~  170 (223)
                         +|+|+++||+|--.+
T Consensus       220 ---lk~GavVIDvGin~~  234 (296)
T PRK14188        220 ---IKPGATVIDVGINRI  234 (296)
T ss_pred             ---ecCCCEEEEcCCccc
Confidence               799999999986543

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.77  E-value=1.6e-08  Score=86.71  Aligned_cols=99  Identities=13%  Similarity=0.220  Sum_probs=74.8

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCC----EEEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhcc
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGF----IISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHII  148 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~----~V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li  148 (223)
                      .++|||||+|+||+++++.|...|+    +|++++|+++...      +.....+..+++++||+|++++| ......++
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl   80 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI   80 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH
Confidence            3589999999999999999988774    6899998765422      23334577788999999999999 35566665


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 035615          149 NKDVMAELGKGGMIINVGRGALIDEKEMLQFLV  181 (223)
Q Consensus       149 ~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~  181 (223)
                       ++....++++.++|.+.-|  ++.+.|.+.+.
T Consensus        81 -~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~  110 (272)
T PRK12491         81 -NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD  110 (272)
T ss_pred             -HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence             3454557888999999887  45566666664

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.77  E-value=2.9e-08  Score=91.96  Aligned_cols=112  Identities=11%  Similarity=0.111  Sum_probs=79.4

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------------------------C-cccccChhhhhcCCcEE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------------------------L-FPYCANVYDLAVNSDVL  134 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~el~~~aDiv  134 (223)
                      ++|||||.|.||..+|..+...|++|.+||+++....                        + .....++++++++||+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            5899999999999999999999999999998865421                        1 22346788899999999


Q ss_pred             EEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCC
Q 035615          135 VVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEN  195 (223)
Q Consensus       135 ~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~  195 (223)
                      +.++|...+.+..+-++.-+.++++++ |.++..++ ....+.+.+.....  ...+-+-+
T Consensus        85 ieavpe~~~vk~~l~~~l~~~~~~~~i-I~SsTsgi-~~s~l~~~~~~~~r--~~~~hP~n  141 (495)
T PRK07531         85 QESVPERLDLKRRVLAEIDAAARPDAL-IGSSTSGF-LPSDLQEGMTHPER--LFVAHPYN  141 (495)
T ss_pred             EEcCcCCHHHHHHHHHHHHhhCCCCcE-EEEcCCCC-CHHHHHhhcCCcce--EEEEecCC
Confidence            999998766565443445556777765 55555443 35577777754332  35554433

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.77  E-value=1.7e-08  Score=86.56  Aligned_cols=104  Identities=23%  Similarity=0.325  Sum_probs=77.6

Q ss_pred             CCCEEEEEecChHHHHHHHHHHh--CCCEEE-EEcCCCCCCC------C-cccccChhhhhcCCcEEEEeccCChhhhhc
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQA--FGFIIS-YNSRRKRPSV------L-FPYCANVYDLAVNSDVLVVCCALTEQTHHI  147 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~--~G~~V~-~~~~~~~~~~------~-~~~~~~l~el~~~aDiv~~~~p~t~~t~~l  147 (223)
                      ..++|||||+|+||+.+++.+..  .++++. +++++++...      + ...+.++++++.++|+|++|+|.... .. 
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~e-   82 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-RA-   82 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-HH-
Confidence            35799999999999999999986  478875 6788764322      1 13467899999999999999994422 22 


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          148 INKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       148 i~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      +   ....++.|.-++..++|.+.+.++|.++.++++..
T Consensus        83 ~---~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         83 I---VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             H---HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence            2   23334667777778899888899999998886654

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.76  E-value=3.6e-08  Score=89.25  Aligned_cols=132  Identities=16%  Similarity=0.222  Sum_probs=87.6

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------------------------C-cccccChhhhhcCCcEE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------------------------L-FPYCANVYDLAVNSDVL  134 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~el~~~aDiv  134 (223)
                      ++|+|||+|.||..+|..|...|++|++||+++....                        + .....+..+++++||+|
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            4799999999999999999999999999998765321                        1 12235677888999999


Q ss_pred             EEeccCChh------hhhcc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHH-HHcC-CceEEEeeC---CCCCCCCCC
Q 035615          135 VVCCALTEQ------THHII--NKDVMAELGKGGMIINVGRGALIDEKEMLQF-LVQG-DINGVGLDV---FENDPNVPK  201 (223)
Q Consensus       135 ~~~~p~t~~------t~~li--~~~~l~~mk~ga~lIN~arg~~vd~~al~~a-L~~~-~i~~a~lDV---~~~EP~~~~  201 (223)
                      ++|+|....      ...+.  -....+.++++.++|+.|.-.+-..+.+.+. +++. .+. .+.|.   +.+|...+.
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~-~~~d~~v~~~Pe~~~~G  159 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLK-LGEDFYLAYNPEFLREG  159 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCC-CCCCceEEECCCcCCCC
Confidence            999995432      11121  1345667899999999987666666666544 4441 111 12332   345544332


Q ss_pred             ----CCCCCCceEEc
Q 035615          202 ----EPLRLDNIVLL  212 (223)
Q Consensus       202 ----~l~~~~nv~~T  212 (223)
                          .++..+.+++.
T Consensus       160 ~~~~~~~~~~~iv~G  174 (411)
T TIGR03026       160 NAVHDLLNPDRIVGG  174 (411)
T ss_pred             ChhhhhcCCCEEEEe
Confidence                35566677664

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.76  E-value=3.6e-08  Score=84.71  Aligned_cols=80  Identities=18%  Similarity=0.303  Sum_probs=68.4

Q ss_pred             cccCCCEEEEEecChH-HHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           75 FKLGGMQVGIVRLGNI-GSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      .++.||++.|||.|.+ |+.++..|...|++|+.+...         ..++.+.+++||+|++++|    +.++++.+  
T Consensus       154 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------t~~l~~~~~~ADIVV~avG----~~~~i~~~--  218 (285)
T PRK14189        154 IPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------TRDLAAHTRQADIVVAAVG----KRNVLTAD--  218 (285)
T ss_pred             CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------CCCHHHHhhhCCEEEEcCC----CcCccCHH--
Confidence            4689999999999999 999999999999999887543         2478899999999999998    45678874  


Q ss_pred             hcCCCCcEEEEcCCCcc
Q 035615          154 AELGKGGMIINVGRGAL  170 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~  170 (223)
                       .+|+|+++||+|--.+
T Consensus       219 -~ik~gavVIDVGin~~  234 (285)
T PRK14189        219 -MVKPGATVIDVGMNRD  234 (285)
T ss_pred             -HcCCCCEEEEcccccc
Confidence             5799999999996553

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.75  E-value=4.1e-08  Score=88.27  Aligned_cols=123  Identities=12%  Similarity=0.091  Sum_probs=86.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------------------Cccc--ccChhhhhcCCcEEEE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------------------LFPY--CANVYDLAVNSDVLVV  136 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------------------~~~~--~~~l~el~~~aDiv~~  136 (223)
                      ++|+|||+|.||..+|..+. .|++|++||++++...                     ....  ..+..+.++.||+|++
T Consensus         1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            47999999999999997776 4999999998765421                     0111  1235677899999999


Q ss_pred             eccCCh----------hhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC----C
Q 035615          137 CCALTE----------QTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK----E  202 (223)
Q Consensus       137 ~~p~t~----------~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~----~  202 (223)
                      |+|...          ..+..+ +...+ +++|.++|+.|.-.+=-.+.+.+.+.+..+.      |.+|.+.+.    .
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~------~~PE~l~~G~a~~d  151 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENII------FSPEFLREGKALYD  151 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEE------ECcccccCCccccc
Confidence            999541          112222 23344 7999999999999988888888887765443      467776543    4


Q ss_pred             CCCCCceEE
Q 035615          203 PLRLDNIVL  211 (223)
Q Consensus       203 l~~~~nv~~  211 (223)
                      +...|+|++
T Consensus       152 ~~~p~rvv~  160 (388)
T PRK15057        152 NLHPSRIVI  160 (388)
T ss_pred             ccCCCEEEE
Confidence            666677665

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=98.73  E-value=6.4e-09  Score=79.62  Aligned_cols=40  Identities=18%  Similarity=0.077  Sum_probs=36.2

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHH
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLA   42 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~   42 (223)
                      +|+||||++.++|+||||+++++++||    +||+++.+||||+
T Consensus        58 ~~~Lk~I~~~~~G~d~id~~~a~~~gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   58 APNLKLISTAGAGVDNIDLEAAKERGIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             HTT-SEEEESSSSCTTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred             cceeEEEEEcccccCcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence            599999999999999999999999999    6999999999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.72  E-value=2.8e-08  Score=86.66  Aligned_cols=90  Identities=13%  Similarity=0.228  Sum_probs=69.4

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------------CcccccChhhhhcCCcEEEEeccC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------------LFPYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------------~~~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      ++|+|||.|.||..+|..|...|++|.+|+|++...+                   ......+.++.++.+|+|++++|.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS   81 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence            4799999999999999999999999999998753211                   122345677888999999999995


Q ss_pred             ChhhhhccCHHHHhcCCCCcEEEEcCCCccc
Q 035615          141 TEQTHHIINKDVMAELGKGGMIINVGRGALI  171 (223)
Q Consensus       141 t~~t~~li~~~~l~~mk~ga~lIN~arg~~v  171 (223)
                       ..++.++ ++..+.+++++++|+++.|--.
T Consensus        82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         82 -QALREVL-KQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             -HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence             4566665 3455667889999999865443

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.72  E-value=1.2e-07  Score=82.39  Aligned_cols=88  Identities=11%  Similarity=0.119  Sum_probs=71.4

Q ss_pred             HHHHHHHHHhCCCEEEEEcCCCCCC----------CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCc
Q 035615           91 GSEVLNRLQAFGFIISYNSRRKRPS----------VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGG  160 (223)
Q Consensus        91 G~~~a~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga  160 (223)
                      |+.||++|...|++|++|||++...          .++....+..++++++|+|++++|..+.++.++ ...++.+++|+
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga  110 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA  110 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence            7899999999999999998875422          144556788999999999999999888888887 56888999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHc
Q 035615          161 MIINVGRGALIDEKEMLQFLVQ  182 (223)
Q Consensus       161 ~lIN~arg~~vd~~al~~aL~~  182 (223)
                      ++||++..   +.+.+++.|+.
T Consensus       111 IVID~STI---sP~t~~~~~e~  129 (341)
T TIGR01724       111 VICNTCTV---SPVVLYYSLEK  129 (341)
T ss_pred             EEEECCCC---CHHHHHHHHHH
Confidence            99999765   45566666655

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK08507 prephenate dehydrogenase; Validated

Probab=98.70  E-value=4.2e-08  Score=84.13  Aligned_cols=127  Identities=14%  Similarity=0.203  Sum_probs=80.0

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC-----Ccc-cccChhhhhcCCcEEEEeccCChhhhhccCHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV-----LFP-YCANVYDLAVNSDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-----~~~-~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~  151 (223)
                      ++|+|||+|.||+.+|+.|+..|+  +|++||+++....     +.. ...+.+++. ++|+|++++|.. .+..++ .+
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~-~~~~~~-~~   77 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVD-AIIEIL-PK   77 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHH-HHHHHH-HH
Confidence            479999999999999999998885  7889998764321     221 234666765 599999999954 344444 44


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCC---C---CCCCC-CCCCCCceEEccCC
Q 035615          152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEN---D---PNVPK-EPLRLDNIVLLPCQ  215 (223)
Q Consensus       152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~---E---P~~~~-~l~~~~nv~~TPH~  215 (223)
                      ..+ +++++++++++.-    ...+.+.+.+.. .+.+++....   |   |.... .+++-..++++|.-
T Consensus        78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~~~-~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~  142 (275)
T PRK08507         78 LLD-IKENTTIIDLGST----KAKIIESVPKHI-RKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVE  142 (275)
T ss_pred             Hhc-cCCCCEEEECccc----hHHHHHHHHHhc-CCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCC
Confidence            556 8899999997552    344555554431 1123444332   1   11111 25554567788753

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.70  E-value=2.3e-08  Score=78.83  Aligned_cols=87  Identities=15%  Similarity=0.315  Sum_probs=63.8

Q ss_pred             EEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-------------C------CcccccChhhhhcCCcEEEEeccCC
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-------------V------LFPYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------------~------~~~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      +|+|+|.|++|.++|..|...|.+|..|.|+++..             .      ......+++++++.+|+|++++|..
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~   80 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ   80 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence            68999999999999999999999999999875321             0      1123578999999999999999943


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcCCCc
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~arg~  169 (223)
                       ..+.++ ++....++++..+|++..|=
T Consensus        81 -~~~~~~-~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   81 -AHREVL-EQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             -GHHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred             -HHHHHH-HHHhhccCCCCEEEEecCCc
Confidence             344444 45566678899999998774

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.70  E-value=1.2e-08  Score=78.48  Aligned_cols=94  Identities=18%  Similarity=0.221  Sum_probs=70.0

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCCCCC-----------CcccccChhhhhcCCcEEEEeccCChh
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKRPSV-----------LFPYCANVYDLAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~-----------~~~~~~~l~el~~~aDiv~~~~p~t~~  143 (223)
                      +++++++.|||.|.+|+.+++.|...|++ |++++|+.++..           ......++.+.+.++|+|+.+.|..  
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~--   86 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSG--   86 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTT--
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCC--
Confidence            68999999999999999999999999997 999999875432           0123456667789999999998854  


Q ss_pred             hhhccCHHHHhcCCCCc-EEEEcCCCcccC
Q 035615          144 THHIINKDVMAELGKGG-MIINVGRGALID  172 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga-~lIN~arg~~vd  172 (223)
                       ...+.++.++..++.. ++++++.-.-||
T Consensus        87 -~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~  115 (135)
T PF01488_consen   87 -MPIITEEMLKKASKKLRLVIDLAVPRDID  115 (135)
T ss_dssp             -STSSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred             -CcccCHHHHHHHHhhhhceeccccCCCCC
Confidence             3378888887665433 888887654443

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.69  E-value=9.3e-09  Score=78.39  Aligned_cols=88  Identities=11%  Similarity=0.238  Sum_probs=54.8

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEE-EEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIIS-YNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      -...+|+|||.|++|..+++.|+..|+.|. +|+|+....+      +...+.+++|+++++|++++++|.. ....+. 
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va-   85 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVA-   85 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHH-
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHH-
Confidence            346789999999999999999999999986 4577653321      2234567889999999999999965 334332 


Q ss_pred             HHHHhc--CCCCcEEEEcC
Q 035615          150 KDVMAE--LGKGGMIINVG  166 (223)
Q Consensus       150 ~~~l~~--mk~ga~lIN~a  166 (223)
                      +++-..  .++|.+++-+|
T Consensus        86 ~~La~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   86 EQLAQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             HHHHCC--S-TT-EEEES-
T ss_pred             HHHHHhccCCCCcEEEECC
Confidence            233322  57899999886

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.69  E-value=3.3e-08  Score=84.71  Aligned_cols=91  Identities=13%  Similarity=0.199  Sum_probs=77.1

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----CcccccChhhhhcCCcEEEEeccCChhhhhccCHH
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~  151 (223)
                      .+.||.+.|.|||.+|+..|+.|++||.+|++....|-...    +......++|+.++.|+++.+.    ..+.+|..+
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtT----Gc~dii~~~  286 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTT----GCKDIITGE  286 (434)
T ss_pred             eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEcc----CCcchhhHH
Confidence            37899999999999999999999999999999876664322    2234678999999999998865    468889999


Q ss_pred             HHhcCCCCcEEEEcCCCcc
Q 035615          152 VMAELGKGGMIINVGRGAL  170 (223)
Q Consensus       152 ~l~~mk~ga~lIN~arg~~  170 (223)
                      .|.+||.++++.|++.-.+
T Consensus       287 H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  287 HFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             HHHhCcCCcEEeccccccc
Confidence            9999999999999987665

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.69  E-value=8.3e-08  Score=82.92  Aligned_cols=112  Identities=13%  Similarity=0.133  Sum_probs=77.4

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------------Cc-------------ccccChhhh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------------LF-------------PYCANVYDL  127 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------------~~-------------~~~~~l~el  127 (223)
                      ++|+|||.|.||..+|..+...|++|++||++++..+                   +.             ....++ +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            6899999999999999999999999999998764321                   00             012234 56


Q ss_pred             hcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCC
Q 035615          128 AVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEN  195 (223)
Q Consensus       128 ~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~  195 (223)
                      +++||+|+.++|...+.+.-+-++.-+.++++++|+....|  +....+.+.+... -+..++.-|.+
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~~-~r~ig~hf~~P  147 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALERK-DRFIGMHWFNP  147 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCCc-ccEEEEecCCC
Confidence            78999999999976554443334455667889998877666  4556677776432 22235554443

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.68  E-value=5.1e-08  Score=90.55  Aligned_cols=113  Identities=13%  Similarity=0.176  Sum_probs=83.4

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhcC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAVN  130 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~  130 (223)
                      ++|||||.|.||+.+|..+...|++|.+||++++..+                +             .....++++ ++.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            6799999999999999999999999999998876422                1             122356655 569


Q ss_pred             CcEEEEeccCChhhhhccCHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCC
Q 035615          131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMI-INVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP  197 (223)
Q Consensus       131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~l-IN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP  197 (223)
                      ||+|+-++|...+.+..+-.+.-+.++++++| .|+|.-.+-   .+.++++.. -+..++..|.+-|
T Consensus        87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p-~r~~G~hff~Pa~  150 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHP-ERVAGLHFFNPVP  150 (507)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCc-ccEEEEeecCCcc
Confidence            99999999998888876655555567899999 499877763   566666532 1224666666444

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.68  E-value=1.3e-08  Score=84.14  Aligned_cols=130  Identities=12%  Similarity=0.132  Sum_probs=90.1

Q ss_pred             CCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHH--HhCCCEEE-EEc
Q 035615           33 ADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRL--QAFGFIIS-YNS  109 (223)
Q Consensus        33 ~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l--~~~G~~V~-~~~  109 (223)
                      ......++|.+..++...|++..         |          . ..++++|||+|.+|+.+++.+  ...|+++. ++|
T Consensus        58 ~~G~~~~gy~v~~l~~~~~~~l~---------~----------~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D  117 (213)
T PRK05472         58 EFGKRGVGYNVEELLEFIEKILG---------L----------D-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFD  117 (213)
T ss_pred             hcCCCCCCeeHHHHHHHHHHHhC---------C----------C-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEE
Confidence            34455567888888887777531         1          1 356899999999999999863  35788876 566


Q ss_pred             CCCCCCC----C--cccccChhhhhcC--CcEEEEeccCChh---hhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 035615          110 RRKRPSV----L--FPYCANVYDLAVN--SDVLVVCCALTEQ---THHIINKDVMAELGKGGMIINVGRGALIDEKEMLQ  178 (223)
Q Consensus       110 ~~~~~~~----~--~~~~~~l~el~~~--aDiv~~~~p~t~~---t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~  178 (223)
                      +++....    +  .....++++++++  .|.+++++|....   ...+.......-+....+.+|+.+|.+|+.++|..
T Consensus       118 ~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~  197 (213)
T PRK05472        118 VDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTV  197 (213)
T ss_pred             CChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHH
Confidence            6543321    1  1123567787754  9999999997654   22233333344456667899999999999999999


Q ss_pred             HHHc
Q 035615          179 FLVQ  182 (223)
Q Consensus       179 aL~~  182 (223)
                      +|..
T Consensus       198 ~l~~  201 (213)
T PRK05472        198 ELQT  201 (213)
T ss_pred             HHHH
Confidence            9874

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.67  E-value=1e-07  Score=81.90  Aligned_cols=80  Identities=21%  Similarity=0.383  Sum_probs=66.2

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.++.||+++|||. |.+|+.+|..|...|++|.++...         ..++.+.+++||+|+++++..    +++...+
T Consensus       153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------t~~l~~~~~~ADIVI~avg~~----~~v~~~~  219 (284)
T PRK14179        153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------TRNLAEVARKADILVVAIGRG----HFVTKEF  219 (284)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------CCCHHHHHhhCCEEEEecCcc----ccCCHHH
Confidence            44689999999999 999999999999999999988322         137889999999999999833    3465554


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 035615          153 MAELGKGGMIINVGRGA  169 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~  169 (223)
                         +|+|+++||+|--.
T Consensus       220 ---ik~GavVIDvgin~  233 (284)
T PRK14179        220 ---VKEGAVVIDVGMNR  233 (284)
T ss_pred             ---ccCCcEEEEeccee
Confidence               79999999998544

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.66  E-value=1.4e-07  Score=82.13  Aligned_cols=110  Identities=9%  Similarity=0.022  Sum_probs=73.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhcC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAVN  130 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~  130 (223)
                      ++|+|||.|.||..+|..+...|++|.+||+++....                +             .....++.+.++.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            4799999999999999999999999999999864211                1             1234678888999


Q ss_pred             CcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCC
Q 035615          131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVF  193 (223)
Q Consensus       131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~  193 (223)
                      ||+|+.++|...+....+-++.-+..++..++. .+.. ......+.+.+.....  ...|-+
T Consensus        83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~-ssts-~~~~~~la~~~~~~~~--~~~~hp  141 (308)
T PRK06129         83 ADYVQESAPENLELKRALFAELDALAPPHAILA-SSTS-ALLASAFTEHLAGRER--CLVAHP  141 (308)
T ss_pred             CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE-EeCC-CCCHHHHHHhcCCccc--EEEEec
Confidence            999999999765444333233323345555443 3333 3456677777754332  344543

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.65  E-value=8.1e-08  Score=88.00  Aligned_cols=107  Identities=14%  Similarity=0.252  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHhCCCEEEEEcCCCCCCC----------CcccccChhhhhcC---CcEEEEeccCChhhhhccCHHHHhcC
Q 035615           90 IGSEVLNRLQAFGFIISYNSRRKRPSV----------LFPYCANVYDLAVN---SDVLVVCCALTEQTHHIINKDVMAEL  156 (223)
Q Consensus        90 iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~el~~~---aDiv~~~~p~t~~t~~li~~~~l~~m  156 (223)
                      ||+.||++|...|++|.+|||++++.+          ++....+++|+++.   +|+|++++|..+.++.++ ...+..|
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l   79 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL   79 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence            799999999999999999999876432          24456789998874   899999999999999988 5688899


Q ss_pred             CCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCC
Q 035615          157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP  197 (223)
Q Consensus       157 k~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP  197 (223)
                      .+|.++||++....-|...+.+.+++..+.....=|...++
T Consensus        80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~  120 (459)
T PRK09287         80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE  120 (459)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence            99999999999999999999999999999833333555443

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.64  E-value=2.1e-07  Score=80.08  Aligned_cols=100  Identities=7%  Similarity=0.079  Sum_probs=73.0

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhcC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAVN  130 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~  130 (223)
                      ++|+|||.|.||..+|..+...|++|+++|++++...                +             .....+.+ .+++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~   82 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD   82 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            5799999999999999999999999999997765431                1             01123444 4789


Q ss_pred             CcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 035615          131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQ  182 (223)
Q Consensus       131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~  182 (223)
                      ||+|+.++|...+.+.-+-++..+.++++++++....|  +....|.+.+..
T Consensus        83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~  132 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR  132 (282)
T ss_pred             CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence            99999999877666544445566778899988544444  555678777743

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.64  E-value=9.8e-08  Score=88.53  Aligned_cols=114  Identities=11%  Similarity=0.135  Sum_probs=82.8

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhc
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAV  129 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~  129 (223)
                      =++|||||.|.||+.+|..+...|++|.+||++++..+                +             .....++++ ++
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~   83 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA   83 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence            46799999999999999999999999999998865421                1             112456655 56


Q ss_pred             CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCC
Q 035615          130 NSDVLVVCCALTEQTHHIINKDVMAELGKGGMII-NVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP  197 (223)
Q Consensus       130 ~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lI-N~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP  197 (223)
                      .||+|+.++|...+.+..+-.+.-+.++++++|. |+|.-.+   ..+.+.++. ..+..++.-|.+-|
T Consensus        84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Pap  148 (503)
T TIGR02279        84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAP  148 (503)
T ss_pred             CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCccc
Confidence            9999999999888877765555556678888776 6665554   456666653 23345777776555

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.63  E-value=8.6e-08  Score=83.46  Aligned_cols=99  Identities=9%  Similarity=0.095  Sum_probs=69.1

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------C--------------cccccChhhhhcCCcEEE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------L--------------FPYCANVYDLAVNSDVLV  135 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~--------------~~~~~~l~el~~~aDiv~  135 (223)
                      ++|+|||.|.||..+|..+...|++|+++|++.+...          +              .....+.++.+++||+|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            5899999999999999999999999999998664321          0              112346777889999999


Q ss_pred             EeccCChhh-hhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 035615          136 VCCALTEQT-HHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLV  181 (223)
Q Consensus       136 ~~~p~t~~t-~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~  181 (223)
                      +++|...+. ..++ ++.-..++++++++....|  +....+.+.+.
T Consensus        85 ~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~  128 (311)
T PRK06130         85 EAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG--LPITAIAQAVT  128 (311)
T ss_pred             EeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence            999966543 3343 3333446777766533333  33557777664

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.62  E-value=7.8e-08  Score=83.11  Aligned_cols=112  Identities=11%  Similarity=0.119  Sum_probs=79.1

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------Cc-------------ccccChhhhhcC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------LF-------------PYCANVYDLAVN  130 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~~-------------~~~~~l~el~~~  130 (223)
                      ++|||||.|.||..+|..+...|++|..||++++..+                +.             ....++ +.++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            4899999999999999999999999999998876421                10             023456 45799


Q ss_pred             CcEEEEeccCChhhhhccCHHHHhcC-CCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCC
Q 035615          131 SDVLVVCCALTEQTHHIINKDVMAEL-GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEN  195 (223)
Q Consensus       131 aDiv~~~~p~t~~t~~li~~~~l~~m-k~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~  195 (223)
                      ||+|+-++|.+.+.+..+-.+.-+.+ +++++|++.+.+-.+.  ++..+++.. -+..++.-|.+
T Consensus        85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~--~la~~~~~~-~r~~g~hf~~P  147 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIM--KLAAATKRP-GRVLGLHFFNP  147 (286)
T ss_pred             CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCC-ccEEEEecCCC
Confidence            99999999999887776655444445 7899998776665444  344444322 12246665654

>PRK07680 late competence protein ComER; Validated

Probab=98.61  E-value=1.4e-07  Score=80.82  Aligned_cols=98  Identities=12%  Similarity=0.309  Sum_probs=72.5

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC----EEEEEcCCCCCCC-------CcccccChhhhhcCCcEEEEeccCChhhhhcc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF----IISYNSRRKRPSV-------LFPYCANVYDLAVNSDVLVVCCALTEQTHHII  148 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~----~V~~~~~~~~~~~-------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li  148 (223)
                      ++|+|||+|+||+.+++.|...|.    +|.+++|+++...       +.....+..+++.++|+|++++| ......++
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl   79 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL   79 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH
Confidence            379999999999999999988883    6899999764321       23334577788899999999997 33345554


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 035615          149 NKDVMAELGKGGMIINVGRGALIDEKEMLQFLV  181 (223)
Q Consensus       149 ~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~  181 (223)
                       ++....++++.++|+++-|  +..+.|.+.+.
T Consensus        80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence             3444567788899999855  36667766654

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.59  E-value=2.1e-07  Score=80.16  Aligned_cols=79  Identities=22%  Similarity=0.346  Sum_probs=67.3

Q ss_pred             cccCCCEEEEEecCh-HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           75 FKLGGMQVGIVRLGN-IGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      .+++|+++.|||.|. +|+.+|+.|...|++|+.+++..         .++.+.+++||+|+.+++.    .+++.++. 
T Consensus       154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t---------~~l~~~~~~ADIVIsAvg~----p~~i~~~~-  219 (286)
T PRK14175        154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS---------KDMASYLKDADVIVSAVGK----PGLVTKDV-  219 (286)
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHHhhCCEEEECCCC----CcccCHHH-
Confidence            469999999999998 99999999999999998887642         3688999999999999973    34677764 


Q ss_pred             hcCCCCcEEEEcCCCc
Q 035615          154 AELGKGGMIINVGRGA  169 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~  169 (223)
                        +|+|+++||+|--.
T Consensus       220 --vk~gavVIDvGi~~  233 (286)
T PRK14175        220 --VKEGAVIIDVGNTP  233 (286)
T ss_pred             --cCCCcEEEEcCCCc
Confidence              58999999999654

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.59  E-value=1.3e-07  Score=80.33  Aligned_cols=98  Identities=16%  Similarity=0.263  Sum_probs=71.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCE---EEEEcCCCCCCC-------CcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFI---ISYNSRRKRPSV-------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~---V~~~~~~~~~~~-------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      ++|||||+|+||+.+++.|...|..   +.+++|+.+...       +.....+..++++++|+|++++| ......++.
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~   79 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLR   79 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHH
Confidence            3799999999999999999887753   578888765422       12334678888999999999998 344555543


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      .  +. ++++.++|.+.  .-+..+.|.+.+..+
T Consensus        80 ~--l~-~~~~~~vis~~--ag~~~~~l~~~~~~~  108 (258)
T PRK06476         80 A--LR-FRPGQTVISVI--AATDRAALLEWIGHD  108 (258)
T ss_pred             H--hc-cCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence            2  22 57888999987  347777888877653

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.58  E-value=2e-07  Score=90.12  Aligned_cols=131  Identities=15%  Similarity=0.186  Sum_probs=89.4

Q ss_pred             CEEEEEecChHHHHHHHHHHhCC--CEEEEEcCCCCCCC-----Ccc--cccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFG--FIISYNSRRKRPSV-----LFP--YCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~-----~~~--~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      ++|+|||+|.||+++++.++..|  .+|++||++.....     +..  ...+++++++++|+|++++|.. ....++ +
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~   81 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A   81 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence            68999999999999999999888  47999998865422     221  2346778899999999999943 444444 3


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCC----------CCCCCCCCceEEccCCCC
Q 035615          151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNV----------PKEPLRLDNIVLLPCQNA  217 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~----------~~~l~~~~nv~~TPH~a~  217 (223)
                      +..+.++++.++++++..+..-.+.+.+.+....+     .+..+-|..          ..+|+.-.++++||+...
T Consensus        82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~-----r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~  153 (735)
T PRK14806         82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPA-----GFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET  153 (735)
T ss_pred             HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCC-----eEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence            44456788999999997664434555555543222     222233321          125777788899997543

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.57  E-value=4.2e-07  Score=78.17  Aligned_cols=99  Identities=14%  Similarity=0.243  Sum_probs=71.6

Q ss_pred             CEEEEEecChHHHHHHHHHHhCC----CEEEEEcCCCCCC-C-------CcccccChhhhhcCCcEEEEeccCChhhhhc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFG----FIISYNSRRKRPS-V-------LFPYCANVYDLAVNSDVLVVCCALTEQTHHI  147 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~-~-------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~l  147 (223)
                      ++|+|||+|+||+.+++.+...|    .+|.+++++.... .       ......+..++++++|+|++++| ......+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v   80 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL   80 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH
Confidence            47999999999999999998877    6788888764221 1       11224577788999999999998 3334444


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 035615          148 INKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQ  182 (223)
Q Consensus       148 i~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~  182 (223)
                      + .+....++++..+|.+.-|  +..+.|.+.+..
T Consensus        81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~  112 (277)
T PRK06928         81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPG  112 (277)
T ss_pred             H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence            3 3343456778899998887  666678777643

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.57  E-value=3e-07  Score=75.37  Aligned_cols=86  Identities=24%  Similarity=0.328  Sum_probs=63.6

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-C-------CcccccChhhhhcCCcEEEEeccCChhhhhccCHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-V-------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~-------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~  151 (223)
                      ++++|+|.|+||..+|+++...|++|.+-++..... .       ......+.++..+.+|+|++++|+... ..+ .++
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~-~~v-~~~   79 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAI-PDV-LAE   79 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHH-HhH-HHH
Confidence            689999999999999999999999998875544332 1       112345778899999999999996532 222 245


Q ss_pred             HHhcCCCCcEEEEcCCC
Q 035615          152 VMAELGKGGMIINVGRG  168 (223)
Q Consensus       152 ~l~~mk~ga~lIN~arg  168 (223)
                      ....+. |.++|++.-.
T Consensus        80 l~~~~~-~KIvID~tnp   95 (211)
T COG2085          80 LRDALG-GKIVIDATNP   95 (211)
T ss_pred             HHHHhC-CeEEEecCCC
Confidence            555555 8899988764

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.52  E-value=7.7e-07  Score=63.09  Aligned_cols=67  Identities=21%  Similarity=0.355  Sum_probs=55.4

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhC-CCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAF-GFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      ..+++++++|+|.|.+|+.+++.+... +.+|.+++|                     |+++.+.+.    .+.+.++..
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r---------------------di~i~~~~~----~~~~~~~~~   73 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR---------------------DILVTATPA----GVPVLEEAT   73 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC---------------------CEEEEcCCC----CCCchHHHH
Confidence            347899999999999999999999998 567888987                     999998873    334445567


Q ss_pred             hcCCCCcEEEEcC
Q 035615          154 AELGKGGMIINVG  166 (223)
Q Consensus       154 ~~mk~ga~lIN~a  166 (223)
                      ..++++.++++++
T Consensus        74 ~~~~~~~~v~~~a   86 (86)
T cd05191          74 AKINEGAVVIDLA   86 (86)
T ss_pred             HhcCCCCEEEecC
Confidence            7889999999874

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.46  E-value=5.8e-07  Score=81.61  Aligned_cols=95  Identities=17%  Similarity=0.189  Sum_probs=71.8

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCC-CEEEEEcCCCCCCC------Cc--ccccChhhhhcCCcEEEEeccCChhhhh
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFG-FIISYNSRRKRPSV------LF--PYCANVYDLAVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~------~~--~~~~~l~el~~~aDiv~~~~p~t~~t~~  146 (223)
                      .+.|++++|+|.|.||+.+++.|...| .+|++++|+.....      +.  ....++.+.+..+|+|+.+++   .+..
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~---s~~~  253 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTG---APHP  253 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCC---CCCc
Confidence            377999999999999999999999999 67999999875422      11  122456778899999999876   3466


Q ss_pred             ccCHHHHhcCC----CCcEEEEcCCCcccCH
Q 035615          147 IINKDVMAELG----KGGMIINVGRGALIDE  173 (223)
Q Consensus       147 li~~~~l~~mk----~ga~lIN~arg~~vd~  173 (223)
                      +++++.++.+.    ...++||.+...=+|.
T Consensus       254 ii~~e~l~~~~~~~~~~~~viDla~Prdid~  284 (417)
T TIGR01035       254 IVSKEDVERALRERTRPLFIIDIAVPRDVDP  284 (417)
T ss_pred             eEcHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence            78888877652    2458999986554554

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.45  E-value=4.6e-07  Score=75.20  Aligned_cols=89  Identities=19%  Similarity=0.211  Sum_probs=63.0

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------Cc---ccccChhhhhcCCcEEEEeccCCh
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------LF---PYCANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------~~---~~~~~l~el~~~aDiv~~~~p~t~  142 (223)
                      ++|+||| .|+||+.+++.|...|.+|.+++|+++...             +.   ....+..+.++++|+|++++|.. 
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~-   79 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD-   79 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-
Confidence            4799997 999999999999999999999998764321             10   11235677889999999999943 


Q ss_pred             hhhhccCHHHHhcCCCCcEEEEcCCCccc
Q 035615          143 QTHHIINKDVMAELGKGGMIINVGRGALI  171 (223)
Q Consensus       143 ~t~~li~~~~l~~mk~ga~lIN~arg~~v  171 (223)
                      ....++ ++.-..++ +.++|++.-|--.
T Consensus        80 ~~~~~l-~~l~~~l~-~~vvI~~~ngi~~  106 (219)
T TIGR01915        80 HVLKTL-ESLRDELS-GKLVISPVVPLAS  106 (219)
T ss_pred             HHHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence            333333 22223344 5799999877443

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.44  E-value=1e-06  Score=69.77  Aligned_cols=80  Identities=20%  Similarity=0.348  Sum_probs=58.3

Q ss_pred             cccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           75 FKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        75 ~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      .+++||++.|||-+ .+|+.++..|...|+.|...+...         .++++.+++||+|+.+++    ..++|..+. 
T Consensus        32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------~~l~~~~~~ADIVVsa~G----~~~~i~~~~-   97 (160)
T PF02882_consen   32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------KNLQEITRRADIVVSAVG----KPNLIKADW-   97 (160)
T ss_dssp             -STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------SSHHHHHTTSSEEEE-SS----STT-B-GGG-
T ss_pred             CCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------CcccceeeeccEEeeeec----ccccccccc-
Confidence            46999999999997 499999999999999999876543         478899999999999986    355676654 


Q ss_pred             hcCCCCcEEEEcCCCcc
Q 035615          154 AELGKGGMIINVGRGAL  170 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~  170 (223)
                        +|+|+++||++.-..
T Consensus        98 --ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   98 --IKPGAVVIDVGINYV  112 (160)
T ss_dssp             --S-TTEEEEE--CEEE
T ss_pred             --ccCCcEEEecCCccc
Confidence              599999999987665

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.42  E-value=6.2e-07  Score=76.68  Aligned_cols=102  Identities=20%  Similarity=0.327  Sum_probs=69.7

Q ss_pred             CEEEEEecChHHHHHHHHHHhC--CCEE-EEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF--GFII-SYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~--G~~V-~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      ++|||||+|.||+.+++.+...  ++++ .++|+++....      +...+.++++++.++|+|+.|.|.... ..    
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~-~~----   76 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAV-EE----   76 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHH-HH----
Confidence            4899999999999999998765  5664 46888764322      223467899998999999999873221 11    


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCCce
Q 035615          151 DVMAELGKGGMIINVGRGALIDE---KEMLQFLVQGDIN  186 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~vd~---~al~~aL~~~~i~  186 (223)
                      -....++.|.-++..+.|.+.|.   +.|.++.++++..
T Consensus        77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~  115 (265)
T PRK13304         77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK  115 (265)
T ss_pred             HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence            12223455666677788887764   4566666665543

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.40  E-value=3.6e-06  Score=65.23  Aligned_cols=80  Identities=21%  Similarity=0.282  Sum_probs=67.4

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.+++||++.|+|- ...|+.++..|...|++|...++..         .++++.+++||+|+.+++..    ++|+.++
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------~~l~~~v~~ADIVvsAtg~~----~~i~~~~   89 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------IQLQSKVHDADVVVVGSPKP----EKVPTEW   89 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------cCHHHHHhhCCEEEEecCCC----CccCHHH
Confidence            35689999999996 6789999999999999999887543         37889999999999998733    5687766


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 035615          153 MAELGKGGMIINVGRGA  169 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~  169 (223)
                         +|+|+++||++...
T Consensus        90 ---ikpGa~Vidvg~~~  103 (140)
T cd05212          90 ---IKPGATVINCSPTK  103 (140)
T ss_pred             ---cCCCCEEEEcCCCc
Confidence               58999999999766

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.39  E-value=4.4e-07  Score=73.62  Aligned_cols=132  Identities=11%  Similarity=0.150  Sum_probs=75.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------------------CcccccChhhhhcCCcEE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------------------LFPYCANVYDLAVNSDVL  134 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------------------~~~~~~~l~el~~~aDiv  134 (223)
                      |+|+|||+|.+|..+|..+...|++|+++|.+++...                         ......+.++.++++|++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~   80 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV   80 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence            6899999999999999999999999999997754210                         011235677889999999


Q ss_pred             EEeccCChhhhhcc--------CHHHHhcCCCCcEEEEcCCCcccCHHHHH-HHHHcCCceEEEee-CCCCCCCCCC---
Q 035615          135 VVCCALTEQTHHII--------NKDVMAELGKGGMIINVGRGALIDEKEML-QFLVQGDINGVGLD-VFENDPNVPK---  201 (223)
Q Consensus       135 ~~~~p~t~~t~~li--------~~~~l~~mk~ga~lIN~arg~~vd~~al~-~aL~~~~i~~a~lD-V~~~EP~~~~---  201 (223)
                      ++|+|......+..        -+...+.++++.++|.-|.-.+=-.+.+. ..|++..-...-++ +|.+|=+.+.   
T Consensus        81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~  160 (185)
T PF03721_consen   81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI  160 (185)
T ss_dssp             EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred             EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence            99998322212221        13566678999999999998886666433 44544221100111 2556655443   


Q ss_pred             -CCCCCCceEE
Q 035615          202 -EPLRLDNIVL  211 (223)
Q Consensus       202 -~l~~~~nv~~  211 (223)
                       .+...|+|++
T Consensus       161 ~d~~~~~rvV~  171 (185)
T PF03721_consen  161 EDFRNPPRVVG  171 (185)
T ss_dssp             HHHHSSSEEEE
T ss_pred             hhccCCCEEEE
Confidence             4666677764

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.39  E-value=8.2e-07  Score=75.56  Aligned_cols=96  Identities=16%  Similarity=0.264  Sum_probs=67.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCC---CEEEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFG---FIISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G---~~V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      ++|+|||+|.||+.+++.+...|   .+|.+++|+++...      +.....+.++++.++|+|++++|.. ....++. 
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~-   80 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLS-   80 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHHH-
Confidence            58999999999999999999888   68999999864322      2233456778889999999999832 3444332 


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 035615          151 DVMAELGKGGMIINVGRGALIDEKEMLQFLV  181 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~vd~~al~~aL~  181 (223)
                      +....+  +.++|.+.-|-  ..+.+.+.+.
T Consensus        81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~  107 (267)
T PRK11880         81 ELKGQL--DKLVVSIAAGV--TLARLERLLG  107 (267)
T ss_pred             HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence            222223  46788776654  5566666654

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=98.39  E-value=1.7e-06  Score=73.66  Aligned_cols=97  Identities=21%  Similarity=0.417  Sum_probs=65.4

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCC----EEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGF----IISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA  154 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~----~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~  154 (223)
                      .++|+|||+|+||+++++.+...+.    ++++++|+.... ......+..++++++|+|++++| ...+..++. +...
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~-~i~~   79 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLL-EIKP   79 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHH-HHHh
Confidence            4789999999999999999987662    488888865442 22334567778889999999987 334555553 3333


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHH
Q 035615          155 ELGKGGMIINVGRGALIDEKEMLQFLV  181 (223)
Q Consensus       155 ~mk~ga~lIN~arg~~vd~~al~~aL~  181 (223)
                      .++++ .+|.+.-|-  +.+.+.+.+.
T Consensus        80 ~l~~~-~iIS~~aGi--~~~~l~~~~~  103 (260)
T PTZ00431         80 YLGSK-LLISICGGL--NLKTLEEMVG  103 (260)
T ss_pred             hccCC-EEEEEeCCc--cHHHHHHHcC
Confidence            45544 455555443  3555555553

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.39  E-value=8.5e-07  Score=76.12  Aligned_cols=91  Identities=21%  Similarity=0.269  Sum_probs=68.8

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-----CCcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      -|.||||+|||||+-|++=|..|+..|.+|++--|.....     ...-...+.+|+.+++|+|.+.+|...+ ..++.+
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~q-~~vy~~   93 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQQ-KEVYEK   93 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhhH-HHHHHH
Confidence            4899999999999999999999999999987654444331     1222356899999999999999995533 445566


Q ss_pred             HHHhcCCCCcEEEEcCCC
Q 035615          151 DVMAELGKGGMIINVGRG  168 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg  168 (223)
                      +.-..||+|+.| -.+.|
T Consensus        94 ~I~p~Lk~G~aL-~FaHG  110 (338)
T COG0059          94 EIAPNLKEGAAL-GFAHG  110 (338)
T ss_pred             HhhhhhcCCceE-Eeccc
Confidence            777888988844 34443

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.38  E-value=2.6e-06  Score=73.31  Aligned_cols=77  Identities=25%  Similarity=0.353  Sum_probs=64.7

Q ss_pred             ccccCCCEEEEEecCh-HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRLGN-IGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.+++||++.|||.|. +|+.+|..|...|+.|..+.+..         .++.+.+++||+|+.+++-    .+++..+ 
T Consensus       154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T---------~~l~~~~~~ADIvi~avG~----p~~v~~~-  219 (285)
T PRK10792        154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT---------KNLRHHVRNADLLVVAVGK----PGFIPGE-  219 (285)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC---------CCHHHHHhhCCEEEEcCCC----cccccHH-
Confidence            3478999999999999 99999999999999999886542         4689999999999999952    2356664 


Q ss_pred             HhcCCCCcEEEEcC
Q 035615          153 MAELGKGGMIINVG  166 (223)
Q Consensus       153 l~~mk~ga~lIN~a  166 (223)
                        .+|+|+++||+|
T Consensus       220 --~vk~gavVIDvG  231 (285)
T PRK10792        220 --WIKPGAIVIDVG  231 (285)
T ss_pred             --HcCCCcEEEEcc
Confidence              468999999999

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.35  E-value=2.6e-06  Score=73.53  Aligned_cols=80  Identities=19%  Similarity=0.330  Sum_probs=66.1

Q ss_pred             ccccCCCEEEEEecCh-HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRLGN-IGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.+++||++.|+|.|. .|++++..|...|++|..+++.         ..++.+.++++|+|+.+++ .+   +.++.+.
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~---------t~~L~~~~~~aDIvI~AtG-~~---~~v~~~~  220 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR---------TQNLPELVKQADIIVGAVG-KP---ELIKKDW  220 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC---------chhHHHHhccCCEEEEccC-CC---CcCCHHH
Confidence            4578999999999998 9999999999999999988862         2467888899999999996 22   2577654


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 035615          153 MAELGKGGMIINVGRGA  169 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~  169 (223)
                         +|+|++++|++-..
T Consensus       221 ---lk~gavViDvg~n~  234 (283)
T PRK14192        221 ---IKQGAVVVDAGFHP  234 (283)
T ss_pred             ---cCCCCEEEEEEEee
Confidence               69999999998543

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.34  E-value=5.8e-06  Score=69.10  Aligned_cols=126  Identities=15%  Similarity=0.163  Sum_probs=86.6

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCE---EEEEcCCC----CCCC-----------Cc--ccc-cChhhhhcCCcE
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFI---ISYNSRRK----RPSV-----------LF--PYC-ANVYDLAVNSDV  133 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~---V~~~~~~~----~~~~-----------~~--~~~-~~l~el~~~aDi  133 (223)
                      .+++++++.|+|.|.+|+.+++.|...|++   ++.+||+.    ....           ..  ... .++.+.++++|+
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv  100 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV  100 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence            458899999999999999999999999985   88999983    2210           00  011 257678889999


Q ss_pred             EEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC-ceEEEeeCCCCCCCCCCCCCCCCceEEc
Q 035615          134 LVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGD-INGVGLDVFENDPNVPKEPLRLDNIVLL  212 (223)
Q Consensus       134 v~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~-i~~a~lDV~~~EP~~~~~l~~~~nv~~T  212 (223)
                      |+.+.|     .++++++.++.|+++.++...+.-  ..|.-+.++.+.|- +..-+.     +.    -..+..|+++-
T Consensus       101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G~-----~~----~~~Q~nn~~~f  164 (226)
T cd05311         101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATGR-----SD----FPNQVNNVLGF  164 (226)
T ss_pred             EEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeCC-----CC----Cccccceeeec
Confidence            999876     567888999999999988888833  24444444444433 232221     11    23356788887


Q ss_pred             cCCC
Q 035615          213 PCQN  216 (223)
Q Consensus       213 PH~a  216 (223)
                      |=++
T Consensus       165 Pg~~  168 (226)
T cd05311         165 PGIF  168 (226)
T ss_pred             chhh
Confidence            7554

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.33  E-value=2.8e-06  Score=71.28  Aligned_cols=101  Identities=12%  Similarity=0.186  Sum_probs=67.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCC---CE-EEEEcCC-CCCCC------CcccccChhhhhcCCcEEEEeccCChhhhh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFG---FI-ISYNSRR-KRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G---~~-V~~~~~~-~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~  146 (223)
                      +.++|+|||.|+||+.+++.+...|   .+ ++.++|+ ++...      +.....+.+++++++|+|++++|.. ..+.
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~   81 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE   81 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence            4678999999999999999987765   33 6677764 22211      2333567888999999999999933 3333


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          147 IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       147 li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      ++ ++.-..++ +.++|.++-|  ++.+.|.+.+..+
T Consensus        82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~  114 (245)
T PRK07634         82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG  114 (245)
T ss_pred             HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence            33 22222334 5689998766  4555666666543

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=98.33  E-value=2.2e-06  Score=75.44  Aligned_cols=103  Identities=14%  Similarity=0.213  Sum_probs=72.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcc-----------------cccChhhhhcCCcEEEEec
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFP-----------------YCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~-----------------~~~~l~el~~~aDiv~~~~  138 (223)
                      ++|+|||.|.||..+|..|...|++|.+++|++...    .+..                 ...+. +.++.+|+|++++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v   81 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV   81 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence            579999999999999999999999999999864211    0110                 12233 5678999999999


Q ss_pred             cCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          139 ALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       139 p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      |.. +....+ ++..+.++++.++|.+..| +...+.+.+.+...++.
T Consensus        82 k~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~  126 (341)
T PRK08229         82 KSA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVL  126 (341)
T ss_pred             cCc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEE
Confidence            844 445544 4456667888999888654 44456677777665543

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.32  E-value=2.3e-06  Score=73.61  Aligned_cols=80  Identities=16%  Similarity=0.272  Sum_probs=66.8

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.++.||++.|||-| .+|+.+|..|...|+.|..+....         .++.+.+++||+|+.+++    ..+++..++
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t---------~~l~~~~~~ADIvV~AvG----~p~~i~~~~  218 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT---------KDLSFYTQNADIVCVGVG----KPDLIKASM  218 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc---------HHHHHHHHhCCEEEEecC----CCCcCCHHH
Confidence            347899999999999 999999999999999998874322         357899999999999996    345677776


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 035615          153 MAELGKGGMIINVGRGA  169 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~  169 (223)
                      +   |+|+++||+|-..
T Consensus       219 v---k~GavVIDvGi~~  232 (285)
T PRK14191        219 V---KKGAVVVDIGINR  232 (285)
T ss_pred             c---CCCcEEEEeeccc
Confidence            5   9999999999644

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.32  E-value=5e-07  Score=71.99  Aligned_cols=92  Identities=11%  Similarity=0.207  Sum_probs=66.4

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----C--------------------------cccccC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----L--------------------------FPYCAN  123 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~--------------------------~~~~~~  123 (223)
                      ..+...+|.|+|.|+.|+..++.++++|++|..+|..+....     .                          ......
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN   95 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence            457789999999999999999999999999998886643210     0                          001234


Q ss_pred             hhhhhcCCcEEEEec-cCChhhhhccCHHHHhcCCCCcEEEEcC
Q 035615          124 VYDLAVNSDVLVVCC-ALTEQTHHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       124 l~el~~~aDiv~~~~-p~t~~t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      +.+.++.+|+|+.++ -..+..-.+++++.++.||++.+++++|
T Consensus        96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            677889999998654 3345566789999999999999999986

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=98.32  E-value=6.7e-06  Score=66.83  Aligned_cols=90  Identities=16%  Similarity=0.180  Sum_probs=66.4

Q ss_pred             CccccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCC-----C-Ccccc--cC----hhhhhcCCcEEEEecc
Q 035615           73 LGFKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPS-----V-LFPYC--AN----VYDLAVNSDVLVVCCA  139 (223)
Q Consensus        73 ~~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~-~~~~~--~~----l~el~~~aDiv~~~~p  139 (223)
                      .+.+++||++.|||-+ .+|+.+|..|...|+.|+.++.+.-..     . .....  .+    +.+.+++||+|+.+++
T Consensus        56 ~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG  135 (197)
T cd01079          56 YGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVP  135 (197)
T ss_pred             cCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccC
Confidence            3568999999999975 579999999999999999886322110     0 00011  13    7789999999999997


Q ss_pred             CChhhhhc-cCHHHHhcCCCCcEEEEcCCCc
Q 035615          140 LTEQTHHI-INKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       140 ~t~~t~~l-i~~~~l~~mk~ga~lIN~arg~  169 (223)
                          ..++ +..+++   |+|+++||+|--.
T Consensus       136 ----~~~~~i~~d~i---k~GavVIDVGi~~  159 (197)
T cd01079         136 ----SPNYKVPTELL---KDGAICINFASIK  159 (197)
T ss_pred             ----CCCCccCHHHc---CCCcEEEEcCCCc
Confidence                3445 777664   8999999998443

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.31  E-value=2e-06  Score=73.73  Aligned_cols=80  Identities=18%  Similarity=0.277  Sum_probs=67.4

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.+++|+++.|+|.+ ..|+.+|..+...|++|..+.+..         .++.+.+++||+|+.+++.    .+++.+++
T Consensus       147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t---------~~L~~~~~~ADIvI~Avgk----~~lv~~~~  213 (279)
T PRK14178        147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT---------ENLKAELRQADILVSAAGK----AGFITPDM  213 (279)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh---------hHHHHHHhhCCEEEECCCc----ccccCHHH
Confidence            347999999999998 999999999999999998776432         4789999999999999962    26788877


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 035615          153 MAELGKGGMIINVGRGA  169 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~  169 (223)
                      +   |+|+++||+|-..
T Consensus       214 v---k~GavVIDVgi~~  227 (279)
T PRK14178        214 V---KPGATVIDVGINQ  227 (279)
T ss_pred             c---CCCcEEEEeeccc
Confidence            4   9999999999443

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.30  E-value=1.3e-06  Score=76.32  Aligned_cols=94  Identities=20%  Similarity=0.255  Sum_probs=65.6

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCC-CEEEEEcCCCCCCC------Ccc--cccChhhhhcCCcEEEEeccCChhhhhc
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFG-FIISYNSRRKRPSV------LFP--YCANVYDLAVNSDVLVVCCALTEQTHHI  147 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~------~~~--~~~~l~el~~~aDiv~~~~p~t~~t~~l  147 (223)
                      +.+++|+|||.|.||+.+++.++..| .+|.+++|++.+..      +..  ...++.+.+.++|+|+.++|.... ..+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~  254 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI  254 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence            68999999999999999999999876 46889999865431      111  123466778899999999984432 222


Q ss_pred             cCHHHHhcC-CCCcEEEEcCCCcccC
Q 035615          148 INKDVMAEL-GKGGMIINVGRGALID  172 (223)
Q Consensus       148 i~~~~l~~m-k~ga~lIN~arg~~vd  172 (223)
                      + +..++.. +++.++||++...-+|
T Consensus       255 ~-~~~~~~~~~~~~~viDlavPrdi~  279 (311)
T cd05213         255 V-ERAMKKRSGKPRLIVDLAVPRDIE  279 (311)
T ss_pred             H-HHHHhhCCCCCeEEEEeCCCCCCc
Confidence            2 3333332 3578999999644344

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.30  E-value=3.3e-06  Score=72.72  Aligned_cols=78  Identities=24%  Similarity=0.396  Sum_probs=65.2

Q ss_pred             ccccCCCEEEEEecCh-HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRLGN-IGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.++.||++.|||.|. +|+.+|..|...|+.|..+....         .++.+..++||+|++++.-    -+++..+ 
T Consensus       159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T---------~~l~~~~~~ADIvv~AvG~----p~~i~~~-  224 (287)
T PRK14176        159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT---------DDLKKYTLDADILVVATGV----KHLIKAD-  224 (287)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC---------CCHHHHHhhCCEEEEccCC----ccccCHH-
Confidence            3468999999999999 99999999999999998887432         3688999999999998752    2467666 


Q ss_pred             HhcCCCCcEEEEcCC
Q 035615          153 MAELGKGGMIINVGR  167 (223)
Q Consensus       153 l~~mk~ga~lIN~ar  167 (223)
                        .+|+|+++||+|-
T Consensus       225 --~vk~gavVIDvGi  237 (287)
T PRK14176        225 --MVKEGAVIFDVGI  237 (287)
T ss_pred             --HcCCCcEEEEecc
Confidence              4689999999985

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.30  E-value=1.6e-06  Score=80.17  Aligned_cols=90  Identities=13%  Similarity=0.246  Sum_probs=68.3

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc-----------------ccC----------
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY-----------------CAN----------  123 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~-----------------~~~----------  123 (223)
                      .+.+.++.|+|.|.+|...++.++.+|.+|.+++++....+     +...                 ..+          
T Consensus       161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            35678999999999999999999999999999987764321     1110                 001          


Q ss_pred             hhhhhcCCcEEEEec--cCChhhhhccCHHHHhcCCCCcEEEEcC
Q 035615          124 VYDLAVNSDVLVVCC--ALTEQTHHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       124 l~el~~~aDiv~~~~--p~t~~t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      +.+.++++|+|+.++  |..+ .-.++.++.++.||+|+++||++
T Consensus       241 ~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA  284 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLA  284 (511)
T ss_pred             HHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEee
Confidence            445678899998877  3222 23578999999999999999987

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.29  E-value=5.4e-06  Score=71.49  Aligned_cols=103  Identities=16%  Similarity=0.188  Sum_probs=71.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cc-----------ccccChhhhhcCCcEEEEeccCChh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LF-----------PYCANVYDLAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~-----------~~~~~l~el~~~aDiv~~~~p~t~~  143 (223)
                      ++|+|||.|.||..+|..|...|.+|..++|+++..+     +.           ....+.+++ +.+|+|++++|.. +
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~   78 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q   78 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence            4799999999999999999999999999988543321     11           112345554 8899999999843 4


Q ss_pred             hhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          144 THHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      +..++ +...+.+.+++.+|....| +-.++.+.+.+....+.
T Consensus        79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~  119 (304)
T PRK06522         79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL  119 (304)
T ss_pred             HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence            44444 3344556677888888777 33356666666555554

>PLN00203 glutamyl-tRNA reductase

Probab=98.29  E-value=9.7e-07  Score=82.04  Aligned_cols=94  Identities=12%  Similarity=0.175  Sum_probs=71.0

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------Cc----ccccChhhhhcCCcEEEEeccCChh
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------LF----PYCANVYDLAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------~~----~~~~~l~el~~~aDiv~~~~p~t~~  143 (223)
                      ++.+++|+|||.|.||+.+++.|...|+ +|++++|+.....       +.    ....++.+.+.++|+|+.++|   .
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s  339 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S  339 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence            3779999999999999999999999997 6999999865432       11    112456678899999999876   4


Q ss_pred             hhhccCHHHHhcCCC-------CcEEEEcCCCcccC
Q 035615          144 THHIINKDVMAELGK-------GGMIINVGRGALID  172 (223)
Q Consensus       144 t~~li~~~~l~~mk~-------ga~lIN~arg~~vd  172 (223)
                      ...+|.++.++.+++       ..+|||++=..=||
T Consensus       340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdId  375 (519)
T PLN00203        340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVG  375 (519)
T ss_pred             CCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCc
Confidence            466888888887643       24788888554333

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=98.29  E-value=4.3e-06  Score=74.02  Aligned_cols=90  Identities=12%  Similarity=0.117  Sum_probs=70.4

Q ss_pred             HHHHHHHHHhCCCEEEEEcCCCCCC----------CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCc
Q 035615           91 GSEVLNRLQAFGFIISYNSRRKRPS----------VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGG  160 (223)
Q Consensus        91 G~~~a~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga  160 (223)
                      |..+|..|...|++|++|||+....          .+.....+..+++++||+|++++|....++.++ ......+++++
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~  110 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA  110 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence            7899999999999999999876521          133345677888999999999999665477776 46777889999


Q ss_pred             EEEEcCCCcccCH-HHHHHHHH
Q 035615          161 MIINVGRGALIDE-KEMLQFLV  181 (223)
Q Consensus       161 ~lIN~arg~~vd~-~al~~aL~  181 (223)
                      ++||++.+..... +.+.+.+.
T Consensus       111 IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557        111 VICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             EEEEecCCCHHHHHHHHHHHhc
Confidence            9999999987655 56666664

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.29  E-value=1.3e-06  Score=79.39  Aligned_cols=94  Identities=17%  Similarity=0.242  Sum_probs=69.4

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC------C--cccccChhhhhcCCcEEEEeccCChhhhh
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV------L--FPYCANVYDLAVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~--~~~~~~l~el~~~aDiv~~~~p~t~~t~~  146 (223)
                      .+.+++|+|+|.|.||+.+++.|...|+ +|++++|++....      +  .....++.+.+..+|+|+.++|.   ...
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s---~~~  255 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGA---PHP  255 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCC---CCc
Confidence            3789999999999999999999999998 7899999865422      1  11124556778899999999863   355


Q ss_pred             ccCHHHHhcC-----CCCcEEEEcCCCcccC
Q 035615          147 IINKDVMAEL-----GKGGMIINVGRGALID  172 (223)
Q Consensus       147 li~~~~l~~m-----k~ga~lIN~arg~~vd  172 (223)
                      +++.+.++.+     +.+.++||++-..=+|
T Consensus       256 ~i~~~~l~~~~~~~~~~~~vviDla~Prdid  286 (423)
T PRK00045        256 IIGKGMVERALKARRHRPLLLVDLAVPRDIE  286 (423)
T ss_pred             EEcHHHHHHHHhhccCCCeEEEEeCCCCCCc
Confidence            6777777654     2457899988544333

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.28  E-value=2.9e-06  Score=73.32  Aligned_cols=103  Identities=17%  Similarity=0.285  Sum_probs=72.0

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-----CCc-------------ccccChhhhhcCCcEEEEeccCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-----VLF-------------PYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~-------------~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      ++|+|||.|.||..+|..|...|.+|..++| .+..     .+.             ....+.++..+.+|+|++++|..
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~   79 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY   79 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence            4799999999999999999999999999988 3211     010             01234556668999999999843


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                       ++..++ ++....++++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus        80 -~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~  121 (305)
T PRK12921         80 -QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL  121 (305)
T ss_pred             -CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence             444443 3344456778888887666 44466777777665544

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.28  E-value=1.4e-06  Score=70.28  Aligned_cols=109  Identities=9%  Similarity=0.195  Sum_probs=72.2

Q ss_pred             EEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhcCC
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAVNS  131 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~a  131 (223)
                      +|+|||.|.||+.+|..+...|++|..||+++....                +             .....+++++. .|
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            699999999999999999999999999998865321                0             11246788888 99


Q ss_pred             cEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCC
Q 035615          132 DVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVF  193 (223)
Q Consensus       132 Div~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~  193 (223)
                      |+|+=++|..-+.+.-+-++.-+.++++++|...+.+  +....|.+.+.. .-+..++--|
T Consensus        80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~-p~R~ig~Hf~  138 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSR-PERFIGMHFF  138 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSST-GGGEEEEEE-
T ss_pred             heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCc-CceEEEEecc
Confidence            9999999987776665556666677899987754333  445556666542 2233455555

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=98.25  E-value=1.8e-06  Score=75.30  Aligned_cols=104  Identities=18%  Similarity=0.293  Sum_probs=78.6

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcccccChhhhhc-CCcEEEEeccCChhhhhccCHHH
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFPYCANVYDLAV-NSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~-~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      .-++|||||+|+||+-.|+.+...|+.|+..+|+.-..    -+...+..+.++++ .+|+|++|+.. ..++.++----
T Consensus        51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilatyp  129 (480)
T KOG2380|consen   51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATYP  129 (480)
T ss_pred             cceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhcC
Confidence            35689999999999999999999999999999986322    14445677777764 79999999852 23444443223


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 035615          153 MAELGKGGMIINVGRGALIDEKEMLQFLVQ  182 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~  182 (223)
                      ++++|.|++++++-.-+.-..+++.+-|-+
T Consensus       130 fqrlrrgtlfvdvlSvKefek~lfekYLPk  159 (480)
T KOG2380|consen  130 FQRLRRGTLFVDVLSVKEFEKELFEKYLPK  159 (480)
T ss_pred             chhhccceeEeeeeecchhHHHHHHHhCcc
Confidence            556899999999988887777777777754

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.25  E-value=9.2e-06  Score=74.90  Aligned_cols=130  Identities=7%  Similarity=0.125  Sum_probs=88.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhC--CCEEEEEcCCCCCCC------------C------------cccccChhhhhcCCcE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF--GFIISYNSRRKRPSV------------L------------FPYCANVYDLAVNSDV  133 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~~~~~------------~------------~~~~~~l~el~~~aDi  133 (223)
                      ++|+|||+|.+|..+|..|...  |++|+++|.++....            +            .....+.++.++.||+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv   81 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI   81 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence            6899999999999999999866  688999987654311            0            1123456677899999


Q ss_pred             EEEeccCChhh------------hhcc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee-CCCCCCC
Q 035615          134 LVVCCALTEQT------------HHII--NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD-VFENDPN  198 (223)
Q Consensus       134 v~~~~p~t~~t------------~~li--~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD-V~~~EP~  198 (223)
                      +++|+| ||..            ..+.  -+..-+.++++.++|.-|.-.+=-.+.+.+.|.+.. .|.-.. +|.+|=+
T Consensus        82 i~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl  159 (473)
T PLN02353         82 VFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFL  159 (473)
T ss_pred             EEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCcc
Confidence            999996 2221            1222  134566679999999998877766677777777531 111111 3567766


Q ss_pred             CCC----CCCCCCceEE
Q 035615          199 VPK----EPLRLDNIVL  211 (223)
Q Consensus       199 ~~~----~l~~~~nv~~  211 (223)
                      .+.    .+...|+|++
T Consensus       160 ~~G~a~~d~~~p~riVi  176 (473)
T PLN02353        160 AEGTAIEDLFKPDRVLI  176 (473)
T ss_pred             CCCCcccccCCCCEEEE
Confidence            543    5778888874

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.24  E-value=2.2e-06  Score=74.76  Aligned_cols=95  Identities=13%  Similarity=0.256  Sum_probs=71.5

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC-------------CC------CcccccChhhhhcCCcEEEEeccC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP-------------SV------LFPYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~-------------~~------~~~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      ++|+|+|.|..|.++|+.|...|.+|..|.|.++.             ..      ......++.++++.||+|++.+| 
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP-   80 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP-   80 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence            68999999999999999999999999999875321             11      12345789999999999999999 


Q ss_pred             ChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 035615          141 TEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEM  176 (223)
Q Consensus       141 t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al  176 (223)
                      +...+.++. +.-..++++..+|+++.|=-.+...+
T Consensus        81 s~~~r~v~~-~l~~~l~~~~~iv~~sKGie~~t~~l  115 (329)
T COG0240          81 SQALREVLR-QLKPLLLKDAIIVSATKGLEPETGRL  115 (329)
T ss_pred             hHHHHHHHH-HHhhhccCCCeEEEEeccccCCCcch
Confidence            444555442 23346689999999998866554333

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.24  E-value=1e-05  Score=71.90  Aligned_cols=117  Identities=16%  Similarity=0.259  Sum_probs=95.5

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------CcccccChhhh---hcCCcEEEEeccCChhhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------LFPYCANVYDL---AVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~el---~~~aDiv~~~~p~t~~t~  145 (223)
                      ...||+||+|-||+.+|......|++|.+|+|+..+.+          ....+.+++|+   ++.-.-|++.+-.....+
T Consensus         3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD   82 (473)
T COG0362           3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVD   82 (473)
T ss_pred             ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHH
Confidence            35699999999999999999999999999999986532          22334567765   456677777775443234


Q ss_pred             hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCC
Q 035615          146 HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEND  196 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~E  196 (223)
                      ..| ++++..|.+|-++|+-+...--|...-.++|.+..|...+.-|...|
T Consensus        83 ~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGE  132 (473)
T COG0362          83 AVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGE  132 (473)
T ss_pred             HHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccc
Confidence            445 56888999999999999999999999999999999999999998887

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.24  E-value=2.8e-06  Score=72.51  Aligned_cols=94  Identities=20%  Similarity=0.351  Sum_probs=71.4

Q ss_pred             CEEEEEecChHHHHHHHHHHhCC----CEEEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFG----FIISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      ++|||||+|+||++++..+...|    .+|++.+|+.+...      +.....+..++..++|+|++++.  |+.    -
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq~----~   75 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQD----L   75 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hHh----H
Confidence            58999999999999999999888    47899998876543      22225667789999999999995  322    1


Q ss_pred             HHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHH
Q 035615          150 KDVMAELG---KGGMIINVGRGALIDEKEMLQFLV  181 (223)
Q Consensus       150 ~~~l~~mk---~ga~lIN~arg~~vd~~al~~aL~  181 (223)
                      .+.++.+|   ++.++|.++-|  +..+.|.+.+.
T Consensus        76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~  108 (266)
T COG0345          76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG  108 (266)
T ss_pred             HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence            34555555   68899999877  45667777775

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.21  E-value=6.9e-06  Score=70.50  Aligned_cols=79  Identities=15%  Similarity=0.291  Sum_probs=65.6

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.+++||++.|||-+ .+|+.+|..|...|+.|..+....         .++.+..++||+|+++++    ..+++..++
T Consensus       152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T---------~~l~~~~~~ADIvV~AvG----kp~~i~~~~  218 (281)
T PRK14183        152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT---------KDLKAHTKKADIVIVGVG----KPNLITEDM  218 (281)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------cCHHHHHhhCCEEEEecC----cccccCHHH
Confidence            347899999999998 899999999999999998775322         368899999999999996    345677776


Q ss_pred             HhcCCCCcEEEEcCCC
Q 035615          153 MAELGKGGMIINVGRG  168 (223)
Q Consensus       153 l~~mk~ga~lIN~arg  168 (223)
                      +   |+|+++||+|--
T Consensus       219 v---k~gavvIDvGin  231 (281)
T PRK14183        219 V---KEGAIVIDIGIN  231 (281)
T ss_pred             c---CCCcEEEEeecc
Confidence            4   899999999943

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=98.20  E-value=7.5e-06  Score=72.49  Aligned_cols=90  Identities=14%  Similarity=0.145  Sum_probs=65.9

Q ss_pred             EEEEEecChHHHHHHHHHHhCC--------CEEEEEcCCC-----C----------C---CCC------cccccChhhhh
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFG--------FIISYNSRRK-----R----------P---SVL------FPYCANVYDLA  128 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G--------~~V~~~~~~~-----~----------~---~~~------~~~~~~l~el~  128 (223)
                      +|+|||.|++|.++|..+...|        .+|..|.|..     .          .   ..+      .....++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            5899999999999999998767        8999997732     0          0   011      12346788999


Q ss_pred             cCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccC
Q 035615          129 VNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALID  172 (223)
Q Consensus       129 ~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd  172 (223)
                      +.||+|++++| +...+.++ .+.-..++++..+|+++.|=-.+
T Consensus        81 ~~ADiIIlAVP-s~~i~~vl-~~l~~~l~~~~~iVs~tKGie~~  122 (342)
T TIGR03376        81 KGADILVFVIP-HQFLEGIC-KQLKGHVKPNARAISCIKGLEVS  122 (342)
T ss_pred             hcCCEEEEECC-hHHHHHHH-HHHHhhcCCCCEEEEEeCCcccC
Confidence            99999999999 33444444 34445678889999999885443

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.19  E-value=1.9e-06  Score=74.27  Aligned_cols=90  Identities=10%  Similarity=0.163  Sum_probs=71.2

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------Ccc------cccChhhhhcCCcEEEEeccC-Chh
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFP------YCANVYDLAVNSDVLVVCCAL-TEQ  143 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~------~~~~l~el~~~aDiv~~~~p~-t~~  143 (223)
                      +...+|.|||.|-+|..-||.+.++|.+|...|++..+..      +.+      ...++++.+.++|+|+-.+=- ...
T Consensus       166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgak  245 (371)
T COG0686         166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAK  245 (371)
T ss_pred             CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCC
Confidence            5667899999999999999999999999999988855432      111      134678899999999877621 223


Q ss_pred             hhhccCHHHHhcCCCCcEEEEcC
Q 035615          144 THHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      .-.++.++.+++||||+++||++
T Consensus       246 aPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         246 APKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             CceehhHHHHHhcCCCcEEEEEE
Confidence            44577889999999999999986

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.17  E-value=1.6e-05  Score=68.32  Aligned_cols=81  Identities=21%  Similarity=0.349  Sum_probs=66.4

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|..+....         .++.+..++||+|+.+++    ..+++..++
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T---------~~l~~~~~~ADIvI~AvG----~~~~i~~~~  218 (284)
T PRK14170        152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT---------KDLPQVAKEADILVVATG----LAKFVKKDY  218 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecC----CcCccCHHH
Confidence            347999999999975 679999999999999998875432         368899999999999997    345687766


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 035615          153 MAELGKGGMIINVGRGAL  170 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~  170 (223)
                      +   |+|+++||+|--.+
T Consensus       219 v---k~GavVIDvGin~~  233 (284)
T PRK14170        219 I---KPGAIVIDVGMDRD  233 (284)
T ss_pred             c---CCCCEEEEccCccc
Confidence            4   89999999996553

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.16  E-value=4.9e-06  Score=72.85  Aligned_cols=84  Identities=12%  Similarity=0.061  Sum_probs=61.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHHh-CC-CEEEEEcCCCCCCC---------C--cccccChhhhhcCCcEEEEeccCChhh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQA-FG-FIISYNSRRKRPSV---------L--FPYCANVYDLAVNSDVLVVCCALTEQT  144 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~-~G-~~V~~~~~~~~~~~---------~--~~~~~~l~el~~~aDiv~~~~p~t~~t  144 (223)
                      ..++|+|||.|.+|+.+++.+.. ++ .+|.+|+|++++..         +  .....+.++.+++||+|+++.|..   
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---  200 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---  200 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence            47899999999999999986553 45 57999999876532         1  222467888999999998777743   


Q ss_pred             hhccCHHHHhcCCCCcEEEEcCC
Q 035615          145 HHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      ..++..+   .+++|+.+.-++.
T Consensus       201 ~pvl~~~---~l~~g~~i~~ig~  220 (314)
T PRK06141        201 EPLVRGE---WLKPGTHLDLVGN  220 (314)
T ss_pred             CCEecHH---HcCCCCEEEeeCC
Confidence            5667654   4689985444443

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.16  E-value=1.5e-05  Score=68.69  Aligned_cols=81  Identities=23%  Similarity=0.418  Sum_probs=67.5

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.+++||++.|||- ..+|+.+|..|...|+.|+.+...         ..++.+.+++||+|+.+++    ..++|+.++
T Consensus       153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~---------t~~l~~~~~~ADIvI~AvG----~p~~i~~~~  219 (284)
T PRK14190        153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK---------TKNLAELTKQADILIVAVG----KPKLITADM  219 (284)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC---------chhHHHHHHhCCEEEEecC----CCCcCCHHH
Confidence            34689999999996 678999999999999999887532         2478899999999999996    344788877


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 035615          153 MAELGKGGMIINVGRGAL  170 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~  170 (223)
                      +   |+|+++||+|.-.+
T Consensus       220 i---k~gavVIDvGi~~~  234 (284)
T PRK14190        220 V---KEGAVVIDVGVNRL  234 (284)
T ss_pred             c---CCCCEEEEeecccc
Confidence            5   89999999997664

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.14  E-value=1.1e-05  Score=71.95  Aligned_cols=93  Identities=12%  Similarity=0.191  Sum_probs=66.3

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCC-------CEEEEEcCCCCC------------------CCC------cccccChhhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFG-------FIISYNSRRKRP------------------SVL------FPYCANVYDL  127 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G-------~~V~~~~~~~~~------------------~~~------~~~~~~l~el  127 (223)
                      .++|+|||.|.+|.++|..+...|       .+|..|.|++..                  ..+      .....+++++
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea   90 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA   90 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence            468999999999999999998665       789888777631                  001      1224678889


Q ss_pred             hcCCcEEEEeccCChhhhhccCHHHHh--cCCCCcEEEEcCCCcccCH
Q 035615          128 AVNSDVLVVCCALTEQTHHIINKDVMA--ELGKGGMIINVGRGALIDE  173 (223)
Q Consensus       128 ~~~aDiv~~~~p~t~~t~~li~~~~l~--~mk~ga~lIN~arg~~vd~  173 (223)
                      ++.+|+|++++| +...+.++. +.-.  .+++++++|+++-|=-.+.
T Consensus        91 v~~aDiIvlAVP-sq~l~~vl~-~l~~~~~l~~~~~iIS~aKGIe~~t  136 (365)
T PTZ00345         91 VEDADLLIFVIP-HQFLESVLS-QIKENNNLKKHARAISLTKGIIVEN  136 (365)
T ss_pred             HhcCCEEEEEcC-hHHHHHHHH-HhccccccCCCCEEEEEeCCcccCC
Confidence            999999999999 334444442 2223  4566789999988754443

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.12  E-value=2.1e-05  Score=67.77  Aligned_cols=77  Identities=16%  Similarity=0.245  Sum_probs=64.3

Q ss_pred             cccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           75 FKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        75 ~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      .+++||++.|||-+ .+|+.++..|...|+.|..+....         .++.+..++||+|+.++.    -.+++..+++
T Consensus       155 i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T---------~~L~~~~~~ADIvV~AvG----kp~~i~~~~v  221 (288)
T PRK14171        155 PNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT---------HNLSSITSKADIVVAAIG----SPLKLTAEYF  221 (288)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccC----CCCccCHHHc
Confidence            36899999999974 679999999999999998776432         468899999999999996    2357887764


Q ss_pred             hcCCCCcEEEEcCC
Q 035615          154 AELGKGGMIINVGR  167 (223)
Q Consensus       154 ~~mk~ga~lIN~ar  167 (223)
                         |+|+++||+|-
T Consensus       222 ---k~GavVIDvGi  232 (288)
T PRK14171        222 ---NPESIVIDVGI  232 (288)
T ss_pred             ---CCCCEEEEeec
Confidence               89999999983

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.11  E-value=1.6e-05  Score=68.45  Aligned_cols=79  Identities=15%  Similarity=0.314  Sum_probs=65.8

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.++.||++.|||- ..+|+.++..|...|+.|+.++...         .++.+..++||+|+.+++    ..+++..++
T Consensus       154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T---------~~l~~~~~~ADIvIsAvG----k~~~i~~~~  220 (284)
T PRK14177        154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT---------QNLPSIVRQADIIVGAVG----KPEFIKADW  220 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEeCC----CcCccCHHH
Confidence            34789999999996 5789999999999999999886432         368899999999999986    345687766


Q ss_pred             HhcCCCCcEEEEcCCC
Q 035615          153 MAELGKGGMIINVGRG  168 (223)
Q Consensus       153 l~~mk~ga~lIN~arg  168 (223)
                         .|+|+++||+|--
T Consensus       221 ---ik~gavVIDvGin  233 (284)
T PRK14177        221 ---ISEGAVLLDAGYN  233 (284)
T ss_pred             ---cCCCCEEEEecCc
Confidence               4899999999853

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.11  E-value=2.6e-05  Score=69.43  Aligned_cols=128  Identities=16%  Similarity=0.287  Sum_probs=88.5

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------------------------C-cccccChhhhhcCCcEE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------------------------L-FPYCANVYDLAVNSDVL  134 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~el~~~aDiv  134 (223)
                      .+|||||+|-||-.+|..+...|++|+++|.+++..+                        + .....+.+ .++.||++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~-~l~~~dv~   88 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPE-ELKECDVF   88 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChh-hcccCCEE
Confidence            7999999999999999999999999999998765321                        0 11123333 35599999


Q ss_pred             EEeccCChhhh-------hccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC--CceEEEeeC---CCCCCCCC
Q 035615          135 VVCCALTEQTH-------HIIN--KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG--DINGVGLDV---FENDPNVP  200 (223)
Q Consensus       135 ~~~~p~t~~t~-------~li~--~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~--~i~~a~lDV---~~~EP~~~  200 (223)
                      ++|+| ||-+.       .+.+  +..-+.||+|.++|==|.-..=-.+.++.-|.+.  .+. ..-|.   |.+|-..|
T Consensus        89 iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P  166 (436)
T COG0677          89 IICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP  166 (436)
T ss_pred             EEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence            99998 44322       2221  3456678999999988888777778887776653  343 33454   56665433


Q ss_pred             C----CCCCCCceE
Q 035615          201 K----EPLRLDNIV  210 (223)
Q Consensus       201 ~----~l~~~~nv~  210 (223)
                      .    .+.+.|+||
T Consensus       167 G~~~~el~~~~kVI  180 (436)
T COG0677         167 GNVLKELVNNPKVI  180 (436)
T ss_pred             CchhhhhhcCCcee
Confidence            2    455667775

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=98.10  E-value=6.2e-06  Score=70.93  Aligned_cols=110  Identities=15%  Similarity=0.162  Sum_probs=72.9

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCC-CEEEEEcCCCCCCCCc----c-----cc-cChhhhhcCCcEEEEeccCCh
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFG-FIISYNSRRKRPSVLF----P-----YC-ANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~----~-----~~-~~l~el~~~aDiv~~~~p~t~  142 (223)
                      +..+.++++.|+|.|.+|+++++.|...| .+|.+++|+.++....    .     .. .++.+.+.++|+|+.++|..-
T Consensus       118 ~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~  197 (278)
T PRK00258        118 GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGM  197 (278)
T ss_pred             CCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCC
Confidence            34688999999999999999999999999 5899999987543211    0     11 133466788999999998653


Q ss_pred             hhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 035615          143 QTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDI  185 (223)
Q Consensus       143 ~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i  185 (223)
                      ....-.+.-.+..++++.+++++.-.+. .. .|+++-++..+
T Consensus       198 ~~~~~~~~~~~~~l~~~~~v~DivY~P~-~T-~ll~~A~~~G~  238 (278)
T PRK00258        198 SGELPLPPLPLSLLRPGTIVYDMIYGPL-PT-PFLAWAKAQGA  238 (278)
T ss_pred             CCCCCCCCCCHHHcCCCCEEEEeecCCC-CC-HHHHHHHHCcC
Confidence            2111011112345678899999976543 33 44444444333

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.10  E-value=2.5e-05  Score=67.02  Aligned_cols=79  Identities=19%  Similarity=0.379  Sum_probs=65.6

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      .+++||++.|||- ..+|+.++..|...|+.|..+....         .++.+..++||+|+.+++    ..++|..++ 
T Consensus       154 i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T---------~~l~~~~~~ADIvIsAvG----kp~~i~~~~-  219 (278)
T PRK14172        154 IDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT---------KNLKEVCKKADILVVAIG----RPKFIDEEY-  219 (278)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCC----CcCccCHHH-
Confidence            4689999999997 5689999999999999998886432         378899999999999997    345688776 


Q ss_pred             hcCCCCcEEEEcCCCc
Q 035615          154 AELGKGGMIINVGRGA  169 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~  169 (223)
                        .|+|+++||+|--.
T Consensus       220 --ik~gavVIDvGin~  233 (278)
T PRK14172        220 --VKEGAIVIDVGTSS  233 (278)
T ss_pred             --cCCCcEEEEeeccc
Confidence              58999999997443

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.10  E-value=1.8e-05  Score=68.23  Aligned_cols=81  Identities=21%  Similarity=0.383  Sum_probs=67.2

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.+++||++.|||- ..+|+.++..|...|+.|..+....         .++.+..++||+|+++++    ..++++.++
T Consensus       150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T---------~~l~~~~~~ADIvIsAvG----kp~~i~~~~  216 (287)
T PRK14173        150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT---------QDLPAVTRRADVLVVAVG----RPHLITPEM  216 (287)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecC----CcCccCHHH
Confidence            34789999999996 5789999999999999998776432         368899999999999996    346787776


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 035615          153 MAELGKGGMIINVGRGAL  170 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~  170 (223)
                      +   |+|+++||+|--.+
T Consensus       217 v---k~GavVIDVGin~~  231 (287)
T PRK14173        217 V---RPGAVVVDVGINRV  231 (287)
T ss_pred             c---CCCCEEEEccCccc
Confidence            5   89999999997664

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.09  E-value=2.8e-05  Score=67.35  Aligned_cols=81  Identities=17%  Similarity=0.316  Sum_probs=66.6

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.+++||++.|||- ..+|+.++..|...|+.|..+....         .++.+..++||+|+++++    ..+++..++
T Consensus       153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T---------~~l~~~~~~ADIvIsAvG----kp~~i~~~~  219 (297)
T PRK14186        153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT---------QDLASITREADILVAAAG----RPNLIGAEM  219 (297)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence            34789999999997 5679999999999999998875432         378899999999999997    235687766


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 035615          153 MAELGKGGMIINVGRGAL  170 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~  170 (223)
                         +|+|+++||+|--.+
T Consensus       220 ---ik~gavVIDvGin~~  234 (297)
T PRK14186        220 ---VKPGAVVVDVGIHRL  234 (297)
T ss_pred             ---cCCCCEEEEeccccc
Confidence               489999999996654

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=98.08  E-value=1.6e-05  Score=70.04  Aligned_cols=92  Identities=14%  Similarity=0.174  Sum_probs=66.6

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCCcccccChh----hhhcCCcEEEEeccCChhhhhccCH
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLFPYCANVY----DLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~l~----el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      ++.++++.|||.|.||+.+++.|...|. +|++.+|+.....    +.++.    ++..++|+|+.+...|.....++..
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~----~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~  246 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLP----YRTVVREELSFQDPYDVIFFGSSESAYAFPHLSW  246 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccc----hhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence            4889999999999999999999999996 5899999875321    22222    4567999999874334444556666


Q ss_pred             HHHhcCCCCcEEEEcCCCcccC
Q 035615          151 DVMAELGKGGMIINVGRGALID  172 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~vd  172 (223)
                      +.++..++ -+|||.+=..=||
T Consensus       247 ~~~~~~~~-r~~iDLAvPRdId  267 (338)
T PRK00676        247 ESLADIPD-RIVFDFNVPRTFP  267 (338)
T ss_pred             HHHhhccC-cEEEEecCCCCCc
Confidence            66655433 4889988655554

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.08  E-value=1.9e-05  Score=67.88  Aligned_cols=79  Identities=16%  Similarity=0.314  Sum_probs=65.5

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.+++||++.|||-+ .+|+.+|..|...|+.|..+....         .++.+..++||+|+++++    ..++++.++
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------~nl~~~~~~ADIvIsAvG----kp~~i~~~~  218 (282)
T PRK14166        152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------KDLSLYTRQADLIIVAAG----CVNLLRSDM  218 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCC----CcCccCHHH
Confidence            346899999999975 679999999999999999876532         468899999999999996    345688775


Q ss_pred             HhcCCCCcEEEEcCCC
Q 035615          153 MAELGKGGMIINVGRG  168 (223)
Q Consensus       153 l~~mk~ga~lIN~arg  168 (223)
                         .|+|+++||+|--
T Consensus       219 ---vk~GavVIDvGin  231 (282)
T PRK14166        219 ---VKEGVIVVDVGIN  231 (282)
T ss_pred             ---cCCCCEEEEeccc
Confidence               4899999999843

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.08  E-value=2e-05  Score=67.82  Aligned_cols=80  Identities=23%  Similarity=0.388  Sum_probs=65.8

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.+++||++.|||- ..+|+.+|..|...|+.|..+....         .++.+..++||+|+++++    ..++++.++
T Consensus       151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T---------~~l~~~~~~ADIvI~AvG----~p~~i~~~~  217 (282)
T PRK14169        151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT---------RNLKQLTKEADILVVAVG----VPHFIGADA  217 (282)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC---------CCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence            34689999999997 4679999999999999998875432         368899999999999997    345688775


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 035615          153 MAELGKGGMIINVGRGA  169 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~  169 (223)
                         +|+|+++||+|--.
T Consensus       218 ---vk~GavVIDvGin~  231 (282)
T PRK14169        218 ---VKPGAVVIDVGISR  231 (282)
T ss_pred             ---cCCCcEEEEeeccc
Confidence               58999999998544

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=98.05  E-value=7.7e-06  Score=71.97  Aligned_cols=84  Identities=18%  Similarity=0.209  Sum_probs=64.3

Q ss_pred             CCEEEEEecChHHHHHHHHHHh-C-CCEEEEEcCCCCCCC---------C--cccccChhhhhcCCcEEEEeccCChhhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQA-F-GFIISYNSRRKRPSV---------L--FPYCANVYDLAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~-~-G~~V~~~~~~~~~~~---------~--~~~~~~l~el~~~aDiv~~~~p~t~~t~  145 (223)
                      -+++||||.|.+|+..++.+.. + ..+|.+|+|+.++..         +  ...+.+.++++++||+|++|+|.   ..
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s---~~  204 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPS---RK  204 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCC---CC
Confidence            5789999999999997776654 2 346899999876532         1  22357889999999999999874   35


Q ss_pred             hccCHHHHhcCCCCcEEEEcCCC
Q 035615          146 HIINKDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~arg  168 (223)
                      .++..+.   +|||+.+..+|.-
T Consensus       205 P~~~~~~---l~~g~~v~~vGs~  224 (325)
T TIGR02371       205 PVVKADW---VSEGTHINAIGAD  224 (325)
T ss_pred             cEecHHH---cCCCCEEEecCCC
Confidence            6776654   5999999999843

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=98.05  E-value=1.6e-05  Score=67.88  Aligned_cols=82  Identities=24%  Similarity=0.399  Sum_probs=67.6

Q ss_pred             cccCCCEEEEEecCh-HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           75 FKLGGMQVGIVRLGN-IGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      .+|+|+++.|||-++ +|+.++..|...+++|.++....         .++.+..++||+|++++-    -.+++..++ 
T Consensus       152 i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------~~l~~~~k~ADIvv~AvG----~p~~i~~d~-  217 (283)
T COG0190         152 IDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------KDLASITKNADIVVVAVG----KPHFIKADM-  217 (283)
T ss_pred             CCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------CCHHHHhhhCCEEEEecC----Ccccccccc-
Confidence            468999999999876 59999999999999999887543         478899999999999985    356677654 


Q ss_pred             hcCCCCcEEEEcCCCcccC
Q 035615          154 AELGKGGMIINVGRGALID  172 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd  172 (223)
                        .|+|+++|+++--.+-+
T Consensus       218 --vk~gavVIDVGinrv~~  234 (283)
T COG0190         218 --VKPGAVVIDVGINRVND  234 (283)
T ss_pred             --ccCCCEEEecCCccccC
Confidence              58999999998655443

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=98.04  E-value=3e-05  Score=66.35  Aligned_cols=105  Identities=10%  Similarity=0.001  Sum_probs=73.5

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------CcccccChhhh-hcCCcEEEEeccCC--hhh
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------LFPYCANVYDL-AVNSDVLVVCCALT--EQT  144 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~~~l~el-~~~aDiv~~~~p~t--~~t  144 (223)
                      ..+++++|+|.|.+|++++..+...|++|.+++|+.++..         +.....++++. ..++|+|+.++|..  +..
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~  194 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI  194 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence            5689999999999999999999999999999998865321         11112233333 35799999999964  222


Q ss_pred             hh-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          145 HH-IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       145 ~~-li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      .. .++   .+.++++.+++|+.-.+...  .|.+..++..+.
T Consensus       195 ~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~  232 (270)
T TIGR00507       195 DEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTK  232 (270)
T ss_pred             CCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCe
Confidence            11 222   34578899999998876533  477777666554

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.04  E-value=2.5e-05  Score=67.12  Aligned_cols=78  Identities=22%  Similarity=0.349  Sum_probs=64.8

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.+++||++.|||- ..+|+.++..|...|++|..+....         .++.+..++||+|+++++    ..++|..++
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------~dl~~~~k~ADIvIsAvG----kp~~i~~~~  219 (282)
T PRK14180        153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------TDLKSHTTKADILIVAVG----KPNFITADM  219 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------CCHHHHhhhcCEEEEccC----CcCcCCHHH
Confidence            34789999999997 5689999999999999998886432         378889999999999997    345677765


Q ss_pred             HhcCCCCcEEEEcCC
Q 035615          153 MAELGKGGMIINVGR  167 (223)
Q Consensus       153 l~~mk~ga~lIN~ar  167 (223)
                         .|+|+++||+|-
T Consensus       220 ---vk~gavVIDvGi  231 (282)
T PRK14180        220 ---VKEGAVVIDVGI  231 (282)
T ss_pred             ---cCCCcEEEEecc
Confidence               489999999984

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.03  E-value=2.6e-05  Score=67.42  Aligned_cols=80  Identities=16%  Similarity=0.269  Sum_probs=66.1

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.++.||++.|||- ..+|+.++..|...|+.|..+....         .++.+..++||+|+++++    ..+++..++
T Consensus       155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------~~l~~~~~~ADIvVsAvG----kp~~i~~~~  221 (294)
T PRK14187        155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------RDLADYCSKADILVAAVG----IPNFVKYSW  221 (294)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence            34699999999997 5689999999999999998876532         368899999999999997    345687776


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 035615          153 MAELGKGGMIINVGRGA  169 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~  169 (223)
                      +   |+|+++||+|--.
T Consensus       222 i---k~gaiVIDVGin~  235 (294)
T PRK14187        222 I---KKGAIVIDVGINS  235 (294)
T ss_pred             c---CCCCEEEEecccc
Confidence            5   7999999998544

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=98.03  E-value=2.4e-05  Score=71.03  Aligned_cols=89  Identities=15%  Similarity=0.236  Sum_probs=65.5

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC------C---cccccChhhhhcCCcEEEEeccCChhhh
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV------L---FPYCANVYDLAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~---~~~~~~l~el~~~aDiv~~~~p~t~~t~  145 (223)
                      .+.|+++.|||.|.||+.+++.|...|. ++++++|+..+..      +   ...+.++.+.+.++|+|+.|++.   ..
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a---~~  254 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNV---LE  254 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCC---CC
Confidence            4789999999999999999999999997 6899999865422      1   11234566788999999999863   35


Q ss_pred             hccCHHHHhcCCCCcEEEEcCCCc
Q 035615          146 HIINKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~arg~  169 (223)
                      .+|..+...  .+..++||.+=..
T Consensus       255 ~vi~~~~~~--~~~~~~iDLavPR  276 (414)
T PRK13940        255 YIVTCKYVG--DKPRVFIDISIPQ  276 (414)
T ss_pred             eeECHHHhC--CCCeEEEEeCCCC
Confidence            567665543  2345778877443

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.02  E-value=1.2e-05  Score=65.24  Aligned_cols=95  Identities=13%  Similarity=-0.008  Sum_probs=65.1

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCC----------c-------ccccChhhhhcCCcEEEE
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVL----------F-------PYCANVYDLAVNSDVLVV  136 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~----------~-------~~~~~l~el~~~aDiv~~  136 (223)
                      .+++++++.|+|. |.+|+.+++.+...|.+|..++|+..+...          .       ....++.+.++++|+|+.
T Consensus        24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~  103 (194)
T cd01078          24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA  103 (194)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence            4578999999995 999999999999999999999887543210          0       011233467888999998


Q ss_pred             eccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCH
Q 035615          137 CCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDE  173 (223)
Q Consensus       137 ~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~  173 (223)
                      +.|....+  .+.  .-...+++.+++|+.+..-++.
T Consensus       104 at~~g~~~--~~~--~~~~~~~~~vv~D~~~~~~~~~  136 (194)
T cd01078         104 AGAAGVEL--LEK--LAWAPKPLAVAADVNAVPPVGI  136 (194)
T ss_pred             CCCCCcee--chh--hhcccCceeEEEEccCCCCCCc
Confidence            88755321  111  1113455778898887776544

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.02  E-value=1.3e-05  Score=71.02  Aligned_cols=89  Identities=15%  Similarity=0.103  Sum_probs=63.8

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-------------C-C------cccccChhhhhcCCcEEEEecc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-------------V-L------FPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------------~-~------~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      ++|+|||.|.+|..+|..|...| .|..|.++++..             . +      .....++++.++.+|+|++++|
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp   86 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP   86 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence            68999999999999999999988 566666543210             0 1      1124567788899999999999


Q ss_pred             CChhhhhccCHHHHhcCCCCcEEEEcCCCccc
Q 035615          140 LTEQTHHIINKDVMAELGKGGMIINVGRGALI  171 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~mk~ga~lIN~arg~~v  171 (223)
                       +..++..+ ++....++++..+|++..|=-.
T Consensus        87 -s~~~~~vl-~~i~~~l~~~~~vIsl~kGi~~  116 (341)
T PRK12439         87 -SHGFRGVL-TELAKELRPWVPVVSLVKGLEQ  116 (341)
T ss_pred             -HHHHHHHH-HHHHhhcCCCCEEEEEEeCCcC
Confidence             44455554 3444557888889999886433

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=98.01  E-value=3e-05  Score=67.19  Aligned_cols=80  Identities=19%  Similarity=0.286  Sum_probs=66.3

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.+++||++.|||-+ .+|+.+|..|...|++|+.+....         .++++..++||+|+.++.-    .+++..++
T Consensus       162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T---------~nl~~~~~~ADIvv~AvGk----~~~i~~~~  228 (299)
T PLN02516        162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT---------PDPESIVREADIVIAAAGQ----AMMIKGDW  228 (299)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence            357999999999975 579999999999999999886432         3688999999999999862    36788776


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 035615          153 MAELGKGGMIINVGRGA  169 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~  169 (223)
                      +   |+|+++||+|--.
T Consensus       229 v---k~gavVIDvGin~  242 (299)
T PLN02516        229 I---KPGAAVIDVGTNA  242 (299)
T ss_pred             c---CCCCEEEEeeccc
Confidence            4   8999999998544

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=98.00  E-value=2.9e-05  Score=68.61  Aligned_cols=80  Identities=15%  Similarity=0.267  Sum_probs=66.2

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.+++||++.|||- ..+|+.+|..|...|+.|..+....         .++.+..++||+|+.+++    ..+++..++
T Consensus       226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T---------~nl~~~~r~ADIVIsAvG----kp~~i~~d~  292 (364)
T PLN02616        226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------KNPEEITREADIIISAVG----QPNMVRGSW  292 (364)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC---------CCHHHHHhhCCEEEEcCC----CcCcCCHHH
Confidence            34789999999996 5679999999999999998875432         478899999999999996    345688776


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 035615          153 MAELGKGGMIINVGRGA  169 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~  169 (223)
                      +   |+|+++||+|--.
T Consensus       293 v---K~GAvVIDVGIn~  306 (364)
T PLN02616        293 I---KPGAVVIDVGINP  306 (364)
T ss_pred             c---CCCCEEEeccccc
Confidence            4   8999999998544

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.00  E-value=3.5e-05  Score=66.23  Aligned_cols=80  Identities=16%  Similarity=0.224  Sum_probs=66.1

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.+++||++.|||- ..+|+.++..|...|+.|..+....         .++.+..++||+|+.+++    ..+++..++
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T---------~nl~~~~~~ADIvI~AvG----k~~~i~~~~  218 (282)
T PRK14182        152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT---------ADLAGEVGRADILVAAIG----KAELVKGAW  218 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecC----CcCccCHHH
Confidence            34689999999997 5689999999999999998876432         368899999999999996    255788776


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 035615          153 MAELGKGGMIINVGRGA  169 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~  169 (223)
                      +   |+|+++||+|--.
T Consensus       219 i---k~gaiVIDvGin~  232 (282)
T PRK14182        219 V---KEGAVVIDVGMNR  232 (282)
T ss_pred             c---CCCCEEEEeecee
Confidence            4   8999999998554

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.99  E-value=3.6e-05  Score=66.28  Aligned_cols=81  Identities=15%  Similarity=0.287  Sum_probs=66.3

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHh--CCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQA--FGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~--~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      +.+++||++.|||- ..+|+.++..|..  .++.|..+....         .++.+..++||+|+++++-    .+++..
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T---------~~l~~~~k~ADIvV~AvGk----p~~i~~  219 (284)
T PRK14193        153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT---------RDLAAHTRRADIIVAAAGV----AHLVTA  219 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC---------CCHHHHHHhCCEEEEecCC----cCccCH
Confidence            34789999999996 5789999999987  789998876432         4788999999999999972    357887


Q ss_pred             HHHhcCCCCcEEEEcCCCcc
Q 035615          151 DVMAELGKGGMIINVGRGAL  170 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~  170 (223)
                      ++   +|+|+++||+|.-.+
T Consensus       220 ~~---ik~GavVIDvGin~~  236 (284)
T PRK14193        220 DM---VKPGAAVLDVGVSRA  236 (284)
T ss_pred             HH---cCCCCEEEEcccccc
Confidence            76   489999999996653

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.98  E-value=3.2e-05  Score=68.00  Aligned_cols=80  Identities=14%  Similarity=0.263  Sum_probs=65.8

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.+++||++.|||-+ .+|+.+|..|...|+.|..+....         .++.+..++||+|+.+++    ..+++..++
T Consensus       209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T---------~nl~~~~~~ADIvIsAvG----kp~~v~~d~  275 (345)
T PLN02897        209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT---------KDPEQITRKADIVIAAAG----IPNLVRGSW  275 (345)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC---------CCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence            347999999999975 579999999999999998775432         368899999999999996    345687776


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 035615          153 MAELGKGGMIINVGRGA  169 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~  169 (223)
                      +   |+|+++||+|--.
T Consensus       276 v---k~GavVIDVGin~  289 (345)
T PLN02897        276 L---KPGAVVIDVGTTP  289 (345)
T ss_pred             c---CCCCEEEEccccc
Confidence            4   8999999998544

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.98  E-value=3.2e-05  Score=67.83  Aligned_cols=88  Identities=15%  Similarity=0.245  Sum_probs=61.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-------------CC------cccccChhhhh-cCCcEEEEecc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-------------VL------FPYCANVYDLA-VNSDVLVVCCA  139 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------------~~------~~~~~~l~el~-~~aDiv~~~~p  139 (223)
                      ++|+|||.|.||..++..|...|.+|..|+|+++..             .+      .....++++.+ ..+|+|++++|
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk   80 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP   80 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence            469999999999999999999999999999864210             01      11234566665 58999999998


Q ss_pred             CChhhhhccCHHHHh-cCCCCcEEEEcCCCc
Q 035615          140 LTEQTHHIINKDVMA-ELGKGGMIINVGRGA  169 (223)
Q Consensus       140 ~t~~t~~li~~~~l~-~mk~ga~lIN~arg~  169 (223)
                      . ..+..++. +... .+++++.+|.+..|-
T Consensus        81 s-~~~~~~l~-~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         81 T-QQLRTICQ-QLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             H-HHHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence            3 34555442 3333 567777777777664

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.96  E-value=4.1e-05  Score=65.95  Aligned_cols=80  Identities=16%  Similarity=0.315  Sum_probs=65.2

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHHhC----CCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhcc
Q 035615           74 GFKLGGMQVGIVRLG-NIGSEVLNRLQAF----GFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHII  148 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li  148 (223)
                      +.+++||++.|||-+ .+|+.+|..|...    ++.|..+....         .++.+.+++||+|+.+++    ..+++
T Consensus       148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T---------~~l~~~~~~ADIvV~AvG----~p~~i  214 (287)
T PRK14181        148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS---------ENLTEILKTADIIIAAIG----VPLFI  214 (287)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccC----CcCcc
Confidence            346999999999975 6799999999887    78888775432         368999999999999996    23578


Q ss_pred             CHHHHhcCCCCcEEEEcCCCc
Q 035615          149 NKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       149 ~~~~l~~mk~ga~lIN~arg~  169 (223)
                      ..+++   |+|+++||+|--.
T Consensus       215 ~~~~i---k~GavVIDvGin~  232 (287)
T PRK14181        215 KEEMI---AEKAVIVDVGTSR  232 (287)
T ss_pred             CHHHc---CCCCEEEEecccc
Confidence            87764   8999999998655

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.96  E-value=5.1e-05  Score=62.28  Aligned_cols=91  Identities=18%  Similarity=0.187  Sum_probs=67.8

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC---CCCCC---------C----------------ccc-----
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR---KRPSV---------L----------------FPY-----  120 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~---~~~~~---------~----------------~~~-----  120 (223)
                      ..|+.++|+|+|.|.+|..+|+.|...|. ++..+|++   .....         +                ...     
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            45899999999999999999999999999 58888876   21100         0                000     


Q ss_pred             ----ccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcC
Q 035615          121 ----CANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       121 ----~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                          ..+++++++.+|+|+-+ ..+.+++.++..+....++...++...+
T Consensus        97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g  145 (200)
T TIGR02354        97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASG  145 (200)
T ss_pred             eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEec
Confidence                12345678899999888 5788899988888888887766666433

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.96  E-value=2.2e-05  Score=69.08  Aligned_cols=83  Identities=16%  Similarity=0.149  Sum_probs=60.2

Q ss_pred             EEEEecChHHHHHHHHHHh-CCCEEEEE-cCCCCCC------CC------------------cccccChhhhhcCCcEEE
Q 035615           82 VGIVRLGNIGSEVLNRLQA-FGFIISYN-SRRKRPS------VL------------------FPYCANVYDLAVNSDVLV  135 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~-~G~~V~~~-~~~~~~~------~~------------------~~~~~~l~el~~~aDiv~  135 (223)
                      |||+|||+||+.+++.+.. -+++++++ |..++..      .+                  .....++++++..+|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            6999999999999998764 46787654 4333210      01                  011346889999999999


Q ss_pred             EeccCChhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          136 VCCALTEQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       136 ~~~p~t~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      .|.|   .+.+..+++.+.+|+++++|+-.--
T Consensus        81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p~  109 (333)
T TIGR01546        81 DATP---GGIGAKNKPLYEKAGVKAIFQGGEK  109 (333)
T ss_pred             ECCC---CCCChhhHHHHHhCCcCEEEECCCC
Confidence            8876   5577889999999999888886443

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.96  E-value=0.00012  Score=62.06  Aligned_cols=105  Identities=16%  Similarity=0.139  Sum_probs=73.1

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCC------C-----------------CC--CCc------ccccC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRK------R-----------------PS--VLF------PYCAN  123 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~------~-----------------~~--~~~------~~~~~  123 (223)
                      .+++|+||.|-|||++|+.+|+.|..+|++|++++.+.      .                 ..  ..+      ....+
T Consensus        34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~  113 (254)
T cd05313          34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFE  113 (254)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeC
Confidence            46899999999999999999999999999988543210      0                 00  000      11123


Q ss_pred             hhhhh-cCCcEEEEeccCChhhhhccCHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          124 VYDLA-VNSDVLVVCCALTEQTHHIINKDVMAELG--KGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       124 l~el~-~~aDiv~~~~p~t~~t~~li~~~~l~~mk--~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      .++++ ..||+++-|.     +.+.|+.+..+.++  +-.+++-.+.+++-.  +-.+.|.++.+.
T Consensus       114 ~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~  172 (254)
T cd05313         114 GKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL  172 (254)
T ss_pred             CcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            34443 4789888764     67889998888884  345777888888755  345778777775

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.95  E-value=1.6e-05  Score=71.72  Aligned_cols=95  Identities=17%  Similarity=0.253  Sum_probs=70.4

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC------C--cccccChhhhhcCCcEEEEeccCChhhhh
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV------L--FPYCANVYDLAVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~--~~~~~~l~el~~~aDiv~~~~p~t~~t~~  146 (223)
                      +|+++++.|||.|.||..+|+.|...|. +|++.+|+..+..      +  +....++.+.+.++|+|+.++.   +...
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~  251 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP  251 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence            3899999999999999999999999996 5889999986543      2  2334667778999999999864   3466


Q ss_pred             ccCHHHHhcC-C--CCcEEEEcCCCcccCH
Q 035615          147 IINKDVMAEL-G--KGGMIINVGRGALIDE  173 (223)
Q Consensus       147 li~~~~l~~m-k--~ga~lIN~arg~~vd~  173 (223)
                      ++..+.+... +  +.-++||++=..-|++
T Consensus       252 ii~~~~ve~a~~~r~~~livDiavPRdie~  281 (414)
T COG0373         252 IITREMVERALKIRKRLLIVDIAVPRDVEP  281 (414)
T ss_pred             ccCHHHHHHHHhcccCeEEEEecCCCCCCc
Confidence            6766554443 1  2257888886554444

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.93  E-value=2.1e-05  Score=68.58  Aligned_cols=85  Identities=11%  Similarity=0.058  Sum_probs=65.5

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHh-CCC-EEEEEcCCCCCCC---------Cccc-ccChhhhhcCCcEEEEeccCChhh
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQA-FGF-IISYNSRRKRPSV---------LFPY-CANVYDLAVNSDVLVVCCALTEQT  144 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~---------~~~~-~~~l~el~~~aDiv~~~~p~t~~t  144 (223)
                      ...++++|||.|.+|+..++.+.. ++. +|.+|+|++++..         +... ..+.++++.++|+|+.++|.+   
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---  199 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---  199 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---
Confidence            357899999999999999999864 665 5899999875432         1111 357889999999999998844   


Q ss_pred             hhccCHHHHhcCCCCcEEEEcCCC
Q 035615          145 HHIINKDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~arg  168 (223)
                      ..+|..    .+|||+.++.+|.-
T Consensus       200 ~Pl~~~----~~~~g~hi~~iGs~  219 (304)
T PRK07340        200 TPVYPE----AARAGRLVVAVGAF  219 (304)
T ss_pred             CceeCc----cCCCCCEEEecCCC
Confidence            567754    26999999999843

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=97.92  E-value=9.3e-05  Score=55.47  Aligned_cols=100  Identities=19%  Similarity=0.355  Sum_probs=70.8

Q ss_pred             CEEEEEe----cChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhc
Q 035615           80 MQVGIVR----LGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE  155 (223)
Q Consensus        80 ~~vgIiG----~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~  155 (223)
                      |+|+|||    -+..|..+.+.|+..|++|+..++......+...+.+++|.-...|++++++|. +.+..+++ +. ..
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v~-~~-~~   77 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIVD-EA-AA   77 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHHH-HH-HH
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCH-HHHHHHHH-HH-HH
Confidence            6899999    799999999999999999999999887777777788999855889999999983 33444442 22 33


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          156 LGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       156 mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      +..+.+++..+    ..++.+.+.+++..+.
T Consensus        78 ~g~~~v~~~~g----~~~~~~~~~a~~~gi~  104 (116)
T PF13380_consen   78 LGVKAVWLQPG----AESEELIEAAREAGIR  104 (116)
T ss_dssp             HT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred             cCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence            45677888877    6778888888888776

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.91  E-value=6e-05  Score=65.83  Aligned_cols=108  Identities=16%  Similarity=0.111  Sum_probs=73.0

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC---CCcc-------------cccChhhhhcCCcEEEEeccCCh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS---VLFP-------------YCANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---~~~~-------------~~~~l~el~~~aDiv~~~~p~t~  142 (223)
                      .++|+|||.|.||..+|.+|...|++|.++.|+....   .+..             ...+..+....+|+|+++++.. 
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-   83 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT-   83 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC-
Confidence            4689999999999999999999999999888765211   0100             0011223457899999999844 


Q ss_pred             hhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEE
Q 035615          143 QTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVG  189 (223)
Q Consensus       143 ~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~  189 (223)
                      ++...+ +.....+++++.++...-| +-.++.+.+.+...++.++.
T Consensus        84 ~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~  128 (313)
T PRK06249         84 ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL  128 (313)
T ss_pred             ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence            333333 2344456778888887666 44667777788766766543

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.91  E-value=2e-05  Score=73.06  Aligned_cols=92  Identities=14%  Similarity=0.272  Sum_probs=67.1

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccccc-------------------cC--------
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYC-------------------AN--------  123 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~-------------------~~--------  123 (223)
                      ...+.+|.|+|.|.+|...++.++.+|.+|+++|+++...+     ++...                   .+        
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~  241 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL  241 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence            35699999999999999999999999999999998765422     22100                   01        


Q ss_pred             hhhhhcCCcEEEEeccCChh-hhhccCHHHHhcCCCCcEEEEcCC
Q 035615          124 VYDLAVNSDVLVVCCALTEQ-THHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       124 l~el~~~aDiv~~~~p~t~~-t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      +.+.++.+|+|+.+...... .-.++.++.++.||+|+++|+++=
T Consensus       242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            01123579999998853211 223556889999999999999984

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.90  E-value=6.1e-05  Score=65.27  Aligned_cols=80  Identities=19%  Similarity=0.349  Sum_probs=64.6

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHhC----CCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhcc
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAF----GFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHII  148 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li  148 (223)
                      +.++.||++.|||- ..+|+.+|..|...    ++.|..+....         .++.+..++||+|+.++.    ..+++
T Consensus       156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T---------~~l~~~~~~ADIvVsAvG----kp~~i  222 (297)
T PRK14168        156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS---------KNLARHCQRADILIVAAG----VPNLV  222 (297)
T ss_pred             CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC---------cCHHHHHhhCCEEEEecC----CcCcc
Confidence            45799999999996 57899999999876    78888775332         368899999999999985    34568


Q ss_pred             CHHHHhcCCCCcEEEEcCCCc
Q 035615          149 NKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       149 ~~~~l~~mk~ga~lIN~arg~  169 (223)
                      ..+++   |+|+++||+|--.
T Consensus       223 ~~~~i---k~gavVIDvGin~  240 (297)
T PRK14168        223 KPEWI---KPGATVIDVGVNR  240 (297)
T ss_pred             CHHHc---CCCCEEEecCCCc
Confidence            77764   8999999998544

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.89  E-value=6.4e-05  Score=64.96  Aligned_cols=80  Identities=13%  Similarity=0.295  Sum_probs=64.3

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHhC----CCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhcc
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAF----GFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHII  148 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li  148 (223)
                      +.+++||++.|||- ..+|+.++..|...    ++.|..+....         .++.+..++||+|+.+++    ..++|
T Consensus       152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------~nl~~~~~~ADIvIsAvG----kp~~i  218 (293)
T PRK14185        152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS---------KNLKKECLEADIIIAALG----QPEFV  218 (293)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC---------CCHHHHHhhCCEEEEccC----CcCcc
Confidence            34689999999997 56799999999876    68888775432         378899999999999997    34567


Q ss_pred             CHHHHhcCCCCcEEEEcCCCc
Q 035615          149 NKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       149 ~~~~l~~mk~ga~lIN~arg~  169 (223)
                      ..++   .|+|+++||+|--.
T Consensus       219 ~~~~---vk~gavVIDvGin~  236 (293)
T PRK14185        219 KADM---VKEGAVVIDVGTTR  236 (293)
T ss_pred             CHHH---cCCCCEEEEecCcc
Confidence            7765   58999999998544

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.87  E-value=0.00034  Score=58.17  Aligned_cols=104  Identities=17%  Similarity=0.215  Sum_probs=70.4

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEE-EcCCC----------CCC-----C-Cccc-----ccChhhhh-cCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISY-NSRRK----------RPS-----V-LFPY-----CANVYDLA-VNS  131 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~-~~~~~----------~~~-----~-~~~~-----~~~l~el~-~~a  131 (223)
                      .++.|++|.|.|+|++|+.+|+.|...|.+|++ .|.+.          +..     . ....     ..+-++++ .+|
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   98 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV   98 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence            358899999999999999999999999997654 45443          100     0 0111     11123333 378


Q ss_pred             cEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          132 DVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       132 Div~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      |+++-|.+     .+.|+.+....++ -.+++--+.+++-+  .-.+.|+++.+.
T Consensus        99 DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~  145 (217)
T cd05211          99 DIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV  145 (217)
T ss_pred             cEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            99988875     4478888888886 35677778888765  345667666654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.87  E-value=0.00043  Score=57.91  Aligned_cols=104  Identities=20%  Similarity=0.257  Sum_probs=71.2

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC---C--------------C----c--ccccChhhhh-cC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS---V--------------L----F--PYCANVYDLA-VN  130 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---~--------------~----~--~~~~~l~el~-~~  130 (223)
                      .++++++|.|.|+|++|+.+++.|..+|++|+++..+....   .              +    +  ....+.++++ .+
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~  106 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD  106 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence            45889999999999999999999999999998553331100   0              0    0  0011233333 37


Q ss_pred             CcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      ||+++-|.+     .+.++.+...+++ =.+++-.+.+.+-  ....+.|+++.+.
T Consensus       107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~t--~~a~~~L~~rGi~  154 (227)
T cd01076         107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPTT--PEADEILHERGVL  154 (227)
T ss_pred             ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCCC--HHHHHHHHHCCCE
Confidence            888887764     5567888888887 3567777777774  4556778887776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.87  E-value=1.1e-05  Score=59.19  Aligned_cols=86  Identities=19%  Similarity=0.181  Sum_probs=56.1

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-CCcc-cccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-VLFP-YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~~~~-~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      +++|++|.|||.|.+|..-++.|...|++|.++++..... .... ....+++.+..+|+|+.+.+. ++    +++...
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d-~~----~n~~i~   78 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDD-PE----LNEAIY   78 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS--HH----HHHHHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCC-HH----HHHHHH
Confidence            5889999999999999999999999999999999874100 1111 123345668889998877653 22    334444


Q ss_pred             hcCCCCcEEEEcC
Q 035615          154 AELGKGGMIINVG  166 (223)
Q Consensus       154 ~~mk~ga~lIN~a  166 (223)
                      ...+.-.+++|++
T Consensus        79 ~~a~~~~i~vn~~   91 (103)
T PF13241_consen   79 ADARARGILVNVV   91 (103)
T ss_dssp             HHHHHTTSEEEET
T ss_pred             HHHhhCCEEEEEC
Confidence            4455455777765

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.85  E-value=5.6e-05  Score=66.81  Aligned_cols=95  Identities=23%  Similarity=0.285  Sum_probs=70.6

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHh-CCC-EEEEEcCCCCCCCC------cccccChhhhhcCCcEEEEeccCChhh
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQA-FGF-IISYNSRRKRPSVL------FPYCANVYDLAVNSDVLVVCCALTEQT  144 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~~------~~~~~~l~el~~~aDiv~~~~p~t~~t  144 (223)
                      +.++++++|.|+|. |.||+.+++.|.. .|. +++.++|+..+...      .....++++.+.++|+|+.+...   .
T Consensus       150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~---~  226 (340)
T PRK14982        150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASM---P  226 (340)
T ss_pred             ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcC---C
Confidence            45689999999998 8999999999974 564 78888887543221      11234677899999998876532   2


Q ss_pred             hh-ccCHHHHhcCCCCcEEEEcCCCcccCHH
Q 035615          145 HH-IINKDVMAELGKGGMIINVGRGALIDEK  174 (223)
Q Consensus       145 ~~-li~~~~l~~mk~ga~lIN~arg~~vd~~  174 (223)
                      .. +++.+.   ++++.++||+++-.=||.+
T Consensus       227 ~~~~I~~~~---l~~~~~viDiAvPRDVd~~  254 (340)
T PRK14982        227 KGVEIDPET---LKKPCLMIDGGYPKNLDTK  254 (340)
T ss_pred             cCCcCCHHH---hCCCeEEEEecCCCCCCcc
Confidence            34 377764   4789999999999888753

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.83  E-value=7.5e-05  Score=64.37  Aligned_cols=78  Identities=18%  Similarity=0.310  Sum_probs=64.3

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHh----CCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhcc
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQA----FGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHII  148 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~----~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li  148 (223)
                      +.+++||++.|||- ..+|+.++..|..    .+++|..+....         .++.+.+++||+|+.+++    ..+++
T Consensus       152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t---------~~l~~~~~~ADIVI~AvG----~p~li  218 (286)
T PRK14184        152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT---------PDLAEECREADFLFVAIG----RPRFV  218 (286)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecC----CCCcC
Confidence            34689999999997 5679999999987    788988765432         478999999999999995    35568


Q ss_pred             CHHHHhcCCCCcEEEEcCC
Q 035615          149 NKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       149 ~~~~l~~mk~ga~lIN~ar  167 (223)
                      ..+++   |+|+++||++-
T Consensus       219 ~~~~v---k~GavVIDVGi  234 (286)
T PRK14184        219 TADMV---KPGAVVVDVGI  234 (286)
T ss_pred             CHHHc---CCCCEEEEeee
Confidence            87766   99999999983

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.82  E-value=8.9e-05  Score=64.25  Aligned_cols=80  Identities=15%  Similarity=0.276  Sum_probs=64.4

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHh----CCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhcc
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQA----FGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHII  148 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~----~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li  148 (223)
                      +.+++||++.|||- ..+|+.++..|..    .|++|.......         .++.+.+++||+|+.+++.    .++|
T Consensus       154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t---------~~l~~~~~~ADIvI~Avg~----~~li  220 (295)
T PRK14174        154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT---------KDIPSYTRQADILIAAIGK----ARFI  220 (295)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecCc----cCcc
Confidence            34689999999997 4679999999876    578887765432         3688999999999999952    2678


Q ss_pred             CHHHHhcCCCCcEEEEcCCCc
Q 035615          149 NKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       149 ~~~~l~~mk~ga~lIN~arg~  169 (223)
                      ..+++   |+|+++||+|-..
T Consensus       221 ~~~~v---k~GavVIDVgi~~  238 (295)
T PRK14174        221 TADMV---KPGAVVIDVGINR  238 (295)
T ss_pred             CHHHc---CCCCEEEEeeccc
Confidence            88876   9999999998544

>PLN02477 glutamate dehydrogenase

Probab=97.81  E-value=0.00044  Score=62.62  Aligned_cols=104  Identities=20%  Similarity=0.194  Sum_probs=72.9

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEE-cCCCC-----CCC---------------Ccc--cccChhhh-hcC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYN-SRRKR-----PSV---------------LFP--YCANVYDL-AVN  130 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~-~~~~~-----~~~---------------~~~--~~~~l~el-~~~  130 (223)
                      .+++|++|.|.|+|++|+.+|+.|...|++|+++ |.+..     -..               ++.  ...+.+++ ...
T Consensus       202 ~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~  281 (410)
T PLN02477        202 KSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEP  281 (410)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceecc
Confidence            4689999999999999999999999999998854 43310     000               000  11122333 347


Q ss_pred             CcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      ||+++-|.     ..+.|+++...+++ -.+++-.+.+.+ ..+ -.+.|+++.|.
T Consensus       282 ~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~  329 (410)
T PLN02477        282 CDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVV  329 (410)
T ss_pred             ccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcE
Confidence            89887765     46679988888886 357888889998 433 45788888776

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.80  E-value=0.00011  Score=63.58  Aligned_cols=79  Identities=19%  Similarity=0.302  Sum_probs=63.5

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhC----CCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAF----GFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      .+++||++.|||- ..+|+.+|..|...    ++.|..+....         .++.+..++||+|+.++.    --+++.
T Consensus       153 i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------~~l~~~~~~ADIvIsAvG----kp~~i~  219 (297)
T PRK14167        153 VDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT---------DDLAAKTRRADIVVAAAG----VPELID  219 (297)
T ss_pred             CCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccC----CcCccC
Confidence            4689999999997 46799999999865    78898775332         368899999999999885    344787


Q ss_pred             HHHHhcCCCCcEEEEcCCCc
Q 035615          150 KDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~arg~  169 (223)
                      .++   +|+|+++||+|--.
T Consensus       220 ~~~---ik~gaiVIDvGin~  236 (297)
T PRK14167        220 GSM---LSEGATVIDVGINR  236 (297)
T ss_pred             HHH---cCCCCEEEEccccc
Confidence            765   48999999999544

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.79  E-value=6.9e-05  Score=62.03  Aligned_cols=92  Identities=25%  Similarity=0.297  Sum_probs=64.2

Q ss_pred             CEEEEEecChHHHHHHHHHHhC--CCE-EEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF--GFI-ISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~--G~~-V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      ++|||||+|.||+.+.+.++.-  .++ +.+||++.++..      ......+++|++++.|+++=|.. .+..+.+   
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~e~---   76 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVREY---   76 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHHHH---
Confidence            4799999999999999999843  465 678999877643      22335789999999999987764 2222322   


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHH
Q 035615          151 DVMAELGKGGMIINVGRGALIDEKEM  176 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~vd~~al  176 (223)
                       ..+.||.|.-+|=+|-|.+.|+.-+
T Consensus        77 -~~~~L~~g~d~iV~SVGALad~~l~  101 (255)
T COG1712          77 -VPKILKAGIDVIVMSVGALADEGLR  101 (255)
T ss_pred             -hHHHHhcCCCEEEEechhccChHHH
Confidence             2333566666666777888866543

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.79  E-value=4.9e-05  Score=66.86  Aligned_cols=83  Identities=14%  Similarity=0.154  Sum_probs=63.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHH-hCCC-EEEEEcCCCCCCC----------C--cccccChhhhhcCCcEEEEeccCChh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQ-AFGF-IISYNSRRKRPSV----------L--FPYCANVYDLAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDiv~~~~p~t~~  143 (223)
                      ..++++|||.|.+|+..++.+. ..++ +|.+++|++++..          +  ...+.+++++++++|+|++++|..  
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~--  203 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK--  203 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence            4688999999999999887764 4566 5889999875432          1  123567889999999999999844  


Q ss_pred             hhhccCHHHHhcCCCCcEEEEcCC
Q 035615          144 THHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                       ..++.    +.+|+|+.++.++.
T Consensus       204 -~p~i~----~~l~~G~hV~~iGs  222 (325)
T PRK08618        204 -TPVFS----EKLKKGVHINAVGS  222 (325)
T ss_pred             -CcchH----HhcCCCcEEEecCC
Confidence             45554    45699999988875

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.77  E-value=7.6e-05  Score=65.69  Aligned_cols=83  Identities=14%  Similarity=0.129  Sum_probs=64.2

Q ss_pred             CCEEEEEecChHHHHHHHHHH-hCCC-EEEEEcCCCCCCC----------Cc--ccccChhhhhcCCcEEEEeccCChhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQ-AFGF-IISYNSRRKRPSV----------LF--PYCANVYDLAVNSDVLVVCCALTEQT  144 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~----------~~--~~~~~l~el~~~aDiv~~~~p~t~~t  144 (223)
                      .++++|||.|.+|+..++.+. ..+. +|.+|+|+.++..          +.  ....++++.+++||+|+.++|.+   
T Consensus       129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~---  205 (326)
T TIGR02992       129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE---  205 (326)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC---
Confidence            579999999999999999987 4675 5889999875432          11  12467888999999999998753   


Q ss_pred             hhccCHHHHhcCCCCcEEEEcCC
Q 035615          145 HHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      ..+|..+.   +|+|+.+..++.
T Consensus       206 ~p~i~~~~---l~~g~~i~~vg~  225 (326)
T TIGR02992       206 TPILHAEW---LEPGQHVTAMGS  225 (326)
T ss_pred             CcEecHHH---cCCCcEEEeeCC
Confidence            46776654   589998887763

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK06046 alanine dehydrogenase; Validated

Probab=97.74  E-value=8e-05  Score=65.55  Aligned_cols=82  Identities=20%  Similarity=0.291  Sum_probs=62.4

Q ss_pred             CCEEEEEecChHHHHHHHHHHh-CCCE-EEEEcCCCCCCC----------C--cccccChhhhhcCCcEEEEeccCChhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQA-FGFI-ISYNSRRKRPSV----------L--FPYCANVYDLAVNSDVLVVCCALTEQT  144 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~-~G~~-V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDiv~~~~p~t~~t  144 (223)
                      -+++||||.|.+|+..++.+.. .+.+ |.+|+|+++...          +  ...+.+++++++ +|+|++++|.+   
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~---  204 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR---  204 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence            5789999999999999998873 4664 778999875422          1  123567888887 99999999854   


Q ss_pred             hhccCHHHHhcCCCCcEEEEcCC
Q 035615          145 HHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      ..++..+.   +|+|+.+..+|.
T Consensus       205 ~P~~~~~~---l~~g~hV~~iGs  224 (326)
T PRK06046        205 KPVVKAEW---IKEGTHINAIGA  224 (326)
T ss_pred             CcEecHHH---cCCCCEEEecCC
Confidence            57777665   489999888874

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.73  E-value=0.00016  Score=61.65  Aligned_cols=99  Identities=18%  Similarity=0.169  Sum_probs=64.4

Q ss_pred             CCEEEEEecChHHHHHHHHHHhC---CCEE-EEEcCCCCCCC----CcccccChhhh-hcCCcEEEEeccCChhhhhccC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAF---GFII-SYNSRRKRPSV----LFPYCANVYDL-AVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~---G~~V-~~~~~~~~~~~----~~~~~~~l~el-~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      .++|||||+|.||+.+++.+..-   ++++ .+++|.+....    ....+.+++++ ..+.|+|+=|.... ..+    
T Consensus         2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~-av~----   76 (267)
T PRK13301          2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQ-AIA----   76 (267)
T ss_pred             ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHH-HHH----
Confidence            36899999999999999998753   3664 35666653221    23346789997 57899998887522 111    


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHc
Q 035615          150 KDVMAELGKGGMIINVGRGALID---EKEMLQFLVQ  182 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~arg~~vd---~~al~~aL~~  182 (223)
                      +--.+-|+.|.-++=.|-|.+.|   ++.|.++.++
T Consensus        77 e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~  112 (267)
T PRK13301         77 EHAEGCLTAGLDMIICSAGALADDALRARLIAAAEA  112 (267)
T ss_pred             HHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence            12223346677777788888887   4445554444

>PRK06444 prephenate dehydrogenase; Provisional

Probab=97.71  E-value=0.00015  Score=59.42  Aligned_cols=62  Identities=11%  Similarity=0.166  Sum_probs=47.6

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCC
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGK  158 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~  158 (223)
                      ++++|||- |.||+.+++.++..|+.|.                     +++||+|++|+|.. .+..+     ++.+. 
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~---------------------~~~~DlVilavPv~-~~~~~-----i~~~~-   52 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVY---------------------IKKADHAFLSVPID-AALNY-----IESYD-   52 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEE---------------------ECCCCEEEEeCCHH-HHHHH-----HHHhC-
Confidence            47999997 9999999999999999985                     36899999999943 33333     33333 


Q ss_pred             CcEEEEcCCCcc
Q 035615          159 GGMIINVGRGAL  170 (223)
Q Consensus       159 ga~lIN~arg~~  170 (223)
                       .++++++.-+-
T Consensus        53 -~~v~Dv~SvK~   63 (197)
T PRK06444         53 -NNFVEISSVKW   63 (197)
T ss_pred             -CeEEeccccCH
Confidence             37889987554

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=97.70  E-value=0.00011  Score=62.47  Aligned_cols=120  Identities=13%  Similarity=0.164  Sum_probs=73.7

Q ss_pred             HHHHHHhCC--CEEEEEcCCCCCCC-----Cccc-ccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEc
Q 035615           94 VLNRLQAFG--FIISYNSRRKRPSV-----LFPY-CANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINV  165 (223)
Q Consensus        94 ~a~~l~~~G--~~V~~~~~~~~~~~-----~~~~-~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~  165 (223)
                      +|+.|+..|  .+|+++|+++....     +... ..+-.+.++++|+|++|+|.. .+..++ ++....++++++++++
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~Dv   78 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTDV   78 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE-
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEEe
Confidence            477788777  78999998876432     2221 122257789999999999944 445554 5566678999999999


Q ss_pred             CCCcccCHHHHHHHHHcCCceEEEee-CCCCCCCC----CCCCCCCCceEEccCCC
Q 035615          166 GRGALIDEKEMLQFLVQGDINGVGLD-VFENDPNV----PKEPLRLDNIVLLPCQN  216 (223)
Q Consensus       166 arg~~vd~~al~~aL~~~~i~~a~lD-V~~~EP~~----~~~l~~~~nv~~TPH~a  216 (223)
                      +.-+.--.+++.+.+. ......+.- .|.+|-.-    ...|+.-.++++||+-.
T Consensus        79 ~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~  133 (258)
T PF02153_consen   79 GSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED  133 (258)
T ss_dssp             -S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred             CCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence            9877655566666665 233333332 45554321    23688888999999864

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.69  E-value=0.00011  Score=65.82  Aligned_cols=99  Identities=14%  Similarity=0.121  Sum_probs=67.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCC-CEEEEEcCCCCCCC---------------CcccccChhhhhcCCcEEEEeccCChh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFG-FIISYNSRRKRPSV---------------LFPYCANVYDLAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~---------------~~~~~~~l~el~~~aDiv~~~~p~t~~  143 (223)
                      ++|.|||.|.||+.+|..|.+.| .+|++.||+..+..               ++.....+.+++++.|+|+.++|..-.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~   81 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD   81 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence            68999999999999999999888 89999999965321               111234677899999999999985422


Q ss_pred             hhhccCHHHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 035615          144 THHIINKDVM-AELGKGGMIINVGRGALIDEKEMLQFLVQGDI  185 (223)
Q Consensus       144 t~~li~~~~l-~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i  185 (223)
                            ...+ +.++.|.-.++++-.+--- .++.+..++..+
T Consensus        82 ------~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agi  117 (389)
T COG1748          82 ------LTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGI  117 (389)
T ss_pred             ------HHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcCe
Confidence                  1222 3346667777776554332 344444444443

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.69  E-value=5.4e-05  Score=66.31  Aligned_cols=88  Identities=16%  Similarity=0.148  Sum_probs=54.9

Q ss_pred             CCEEEEEecChHHHHHHHHHHh-CCC-EEEEEcCCCCCCC-----------CcccccChhhhhcCCcEEEEeccCChhhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQA-FGF-IISYNSRRKRPSV-----------LFPYCANVYDLAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~-----------~~~~~~~l~el~~~aDiv~~~~p~t~~t~  145 (223)
                      -++++|||.|..++.-++.+.. ++. +|.+|+|+++..+           ......+.++++++||+|+.++|.+..+ 
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-  206 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-  206 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-
Confidence            3589999999999999988764 566 5899999875422           1223678999999999999988755322 


Q ss_pred             hccCHHHHhcCCCCcEEEEcCCCcc
Q 035615          146 HIINKDVMAELGKGGMIINVGRGAL  170 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~arg~~  170 (223)
                      .+++.+   .+|+|+.++.++....
T Consensus       207 P~~~~~---~l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  207 PVFDAE---WLKPGTHINAIGSYTP  228 (313)
T ss_dssp             ESB-GG---GS-TT-EEEE-S-SST
T ss_pred             ccccHH---HcCCCcEEEEecCCCC
Confidence            677765   4689999999997544

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.68  E-value=0.00057  Score=62.48  Aligned_cols=106  Identities=9%  Similarity=0.098  Sum_probs=71.9

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEE-cCCCC-------C--------------CCCcc-----cccChhh
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYN-SRRKR-------P--------------SVLFP-----YCANVYD  126 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~-~~~~~-------~--------------~~~~~-----~~~~l~e  126 (223)
                      +.++.|+||.|.|+|++|+.+|+.|..+|++|+++ |.+..       .              ..++.     ...+.++
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~  306 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS  306 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence            34689999999999999999999999999999876 42110       0              00010     1123344


Q ss_pred             hhc-CCcEEEEeccCChhhhhccCHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          127 LAV-NSDVLVVCCALTEQTHHIINKDVMAELG--KGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       127 l~~-~aDiv~~~~p~t~~t~~li~~~~l~~mk--~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      ++. +||+++-|..     .+.|+.+....++  .-.+++-.+.+.+ ..+ -.+.|.++.|.
T Consensus       307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI~  362 (445)
T PRK09414        307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGVL  362 (445)
T ss_pred             ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCcE
Confidence            443 6899887764     6678777766663  2357778888888 333 45677777765

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.68  E-value=0.00016  Score=66.80  Aligned_cols=100  Identities=14%  Similarity=0.158  Sum_probs=67.5

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc-----ccccChhhh--hcCCcEEEEeccCChhhhh
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF-----PYCANVYDL--AVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~-----~~~~~l~el--~~~aDiv~~~~p~t~~t~~  146 (223)
                      +.++++++++|+|.|.+|+++++.+...|++|.+++|+..+....     ....+++++  +.++|+|++|+|....   
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~---  403 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVT---  403 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCc---
Confidence            346789999999999999999999999999999998875432211     011122222  5689999999996532   


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 035615          147 IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDI  185 (223)
Q Consensus       147 li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i  185 (223)
                       +. ..+   .  .+++++.-.+....  |.++.++..+
T Consensus       404 -~~-~~l---~--~~v~D~~Y~P~~T~--ll~~A~~~G~  433 (477)
T PRK09310        404 -IP-KAF---P--PCVVDINTLPKHSP--YTQYARSQGS  433 (477)
T ss_pred             -ch-hHH---h--hhEEeccCCCCCCH--HHHHHHHCcC
Confidence             22 222   2  27888877664433  6666666544

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.67  E-value=8.8e-05  Score=65.39  Aligned_cols=82  Identities=13%  Similarity=0.172  Sum_probs=61.0

Q ss_pred             CCEEEEEecChHHHHHHHHHHh-CCC-EEEEEcCCCCCCC----------Cc--ccccChhhhhcCCcEEEEeccCChhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQA-FGF-IISYNSRRKRPSV----------LF--PYCANVYDLAVNSDVLVVCCALTEQT  144 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~----------~~--~~~~~l~el~~~aDiv~~~~p~t~~t  144 (223)
                      .++++|||.|.+|+..+..+.. .+. +|.+|+|++++.+          +.  ..+.++++++.++|+|++++|..   
T Consensus       132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~---  208 (330)
T PRK08291        132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE---  208 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC---
Confidence            5799999999999999888874 564 6899999865432          11  12467889999999999998754   


Q ss_pred             hhccCHHHHhcCCCCcEEEEcC
Q 035615          145 HHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      ..++..+.   +++|+.+..++
T Consensus       209 ~p~i~~~~---l~~g~~v~~vg  227 (330)
T PRK08291        209 EPILKAEW---LHPGLHVTAMG  227 (330)
T ss_pred             CcEecHHH---cCCCceEEeeC
Confidence            46676654   57887666643

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.67  E-value=0.00011  Score=63.38  Aligned_cols=104  Identities=13%  Similarity=0.063  Sum_probs=70.4

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCCc-------------ccccChhhhhcCCcEEEEeccCC
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLF-------------PYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~-------------~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      .+.++++.|+|.|.+|++++..|...|+ +|+++||+..+.+..             ....++.+.++++|+|+.++|..
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G  203 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG  203 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence            5788999999999999999999999998 699999986543211             01233455678899999998854


Q ss_pred             hh-h-hhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 035615          142 EQ-T-HHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGD  184 (223)
Q Consensus       142 ~~-t-~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~  184 (223)
                      -. . ...++.   ..++++.+++|+.-.+. ++ .|+++-++..
T Consensus       204 m~~~~~~~~~~---~~l~~~~~v~DivY~P~-~T-~ll~~A~~~G  243 (284)
T PRK12549        204 MAKHPGLPLPA---ELLRPGLWVADIVYFPL-ET-ELLRAARALG  243 (284)
T ss_pred             CCCCCCCCCCH---HHcCCCcEEEEeeeCCC-CC-HHHHHHHHCC
Confidence            21 1 112333   34677888888876653 33 3444444433

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.66  E-value=0.0002  Score=63.06  Aligned_cols=117  Identities=18%  Similarity=0.271  Sum_probs=96.7

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------CcccccChhhh---hcCCcEEEEeccCChhhhh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------LFPYCANVYDL---AVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~el---~~~aDiv~~~~p~t~~t~~  146 (223)
                      ..||+||++-||+.++-.....|+.|.+|+|+..+.+          ......|++++   ++.-..|++.+-.......
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~   86 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ   86 (487)
T ss_pred             cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence            4689999999999999999999999999999876543          12234677776   4667788888766655666


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCC
Q 035615          147 IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP  197 (223)
Q Consensus       147 li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP  197 (223)
                      +| +++...|.+|-++|+-+...--|...=.+.|....|...+.-|...|-
T Consensus        87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEE  136 (487)
T KOG2653|consen   87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEE  136 (487)
T ss_pred             HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCccc
Confidence            66 567788999999999999999999999999999999889999988774

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.66  E-value=0.00019  Score=69.54  Aligned_cols=111  Identities=12%  Similarity=0.107  Sum_probs=79.5

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhcC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAVN  130 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~  130 (223)
                      ++|+|||.|.||..+|..+...|++|..+|++++...                +             .....++ +.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            5899999999999999999999999999998865321                0             0112345 44789


Q ss_pred             CcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615          131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE  194 (223)
Q Consensus       131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~  194 (223)
                      ||+|+=++|...+.+.-+-++.-+.++++++|...+  +-+....|.+.++. .-+..++.-|.
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNT--Ssl~i~~la~~~~~-p~r~~g~Hff~  453 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNT--STISISLLAKALKR-PENFCGMHFFN  453 (715)
T ss_pred             CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcC--CCCCHHHHHhhcCC-CccEEEEecCC
Confidence            999999999888877766667777789998886432  33455566676653 23335665553

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.66  E-value=0.00013  Score=63.94  Aligned_cols=83  Identities=16%  Similarity=0.144  Sum_probs=64.4

Q ss_pred             CCEEEEEecChHHHHHHHHHHh-CCC-EEEEEcCCCCCCC---------C--cccccChhhhhcCCcEEEEeccCChhhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQA-FGF-IISYNSRRKRPSV---------L--FPYCANVYDLAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~---------~--~~~~~~l~el~~~aDiv~~~~p~t~~t~  145 (223)
                      -++++|+|.|..++.-++.+.. +.. +|.+|+|++++..         +  .....+.+++++.||+|+.+++   .+.
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~---s~~  204 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTP---SRE  204 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecC---CCC
Confidence            5789999999999999887764 334 6899999986542         1  1124678999999999998876   446


Q ss_pred             hccCHHHHhcCCCCcEEEEcCC
Q 035615          146 HIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      .+|+.+.   +|||+.++.+|.
T Consensus       205 P~~~~~~---l~~G~hi~~iGs  223 (315)
T PRK06823        205 PLLQAED---IQPGTHITAVGA  223 (315)
T ss_pred             ceeCHHH---cCCCcEEEecCC
Confidence            7887765   589999999983

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=97.65  E-value=0.00027  Score=60.40  Aligned_cols=102  Identities=23%  Similarity=0.284  Sum_probs=62.4

Q ss_pred             CEEEEEecChHHHHHHHHHHhC-CCEEE-EEcCCCCCC-------CCcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF-GFIIS-YNSRRKRPS-------VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~-------~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      ++|||||+|+||+.+++.+... ++++. ++++.....       .+...+.+++++-.+.|+|+.|.|.... .    +
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~----e   76 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-K----E   76 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-H----H
Confidence            4899999999999999998865 56653 343332211       0223456788874569999999984322 1    1


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCCce
Q 035615          151 DVMAELGKGGMIINVGRGALIDE---KEMLQFLVQGDIN  186 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~vd~---~al~~aL~~~~i~  186 (223)
                      -....++.|.-++-.+-|.+.|.   +.|.++.+++...
T Consensus        77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~  115 (265)
T PRK13303         77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR  115 (265)
T ss_pred             HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence            22233455555555555655543   4466666665543

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.64  E-value=0.00022  Score=62.74  Aligned_cols=83  Identities=17%  Similarity=0.204  Sum_probs=66.9

Q ss_pred             CCEEEEEecChHHHHHHHHHHh-CCC-EEEEEcCCCCCCC---------C---cccccChhhhhcCCcEEEEeccCChhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQA-FGF-IISYNSRRKRPSV---------L---FPYCANVYDLAVNSDVLVVCCALTEQT  144 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~---------~---~~~~~~l~el~~~aDiv~~~~p~t~~t  144 (223)
                      -++++|||.|..++.-.+.++. ++. +|.+|+|+++..+         .   +....+.+++++.||+|+.++|.+   
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~---  206 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPST---  206 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCC---
Confidence            5689999999999999998874 566 5899999986543         1   234678899999999999999865   


Q ss_pred             hhccCHHHHhcCCCCcEEEEcCC
Q 035615          145 HHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      ..++..+++   |||+.+..++-
T Consensus       207 ~Pil~~~~l---~~G~hI~aiGa  226 (330)
T COG2423         207 EPVLKAEWL---KPGTHINAIGA  226 (330)
T ss_pred             CCeecHhhc---CCCcEEEecCC
Confidence            377877764   79999999984

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=97.64  E-value=0.00035  Score=60.88  Aligned_cols=113  Identities=11%  Similarity=0.117  Sum_probs=79.5

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------Cc-------------ccccChhhhhc
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------LF-------------PYCANVYDLAV  129 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~~-------------~~~~~l~el~~  129 (223)
                      -++|+|||.|.||+.+|..+...|++|..+|++++...                +.             ....++. .++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~   81 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK   81 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence            47899999999999999999887799999998854211                00             0112222 588


Q ss_pred             CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEeeCCCCC
Q 035615          130 NSDVLVVCCALTEQTHHIINKDVMAELGKGGMII-NVGRGALIDEKEMLQFLVQGDINGVGLDVFEND  196 (223)
Q Consensus       130 ~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lI-N~arg~~vd~~al~~aL~~~~i~~a~lDV~~~E  196 (223)
                      .||+|+=.+|.+-+.+.-+-++.=...||+++|- |+|+   +.-.++.++++ +.=+..++--|.+-
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~-rper~iG~HFfNP~  145 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALK-RPERFIGLHFFNPV  145 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhC-CchhEEEEeccCCC
Confidence            9999999999887777655566666778998876 5544   44566777773 33344676666443

>PRK14030 glutamate dehydrogenase; Provisional

Probab=97.63  E-value=0.00081  Score=61.41  Aligned_cols=111  Identities=13%  Similarity=0.100  Sum_probs=73.6

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEE--------EcCCCCCCC---------------------Cc--cccc
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISY--------NSRRKRPSV---------------------LF--PYCA  122 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~--------~~~~~~~~~---------------------~~--~~~~  122 (223)
                      +.+|+|+||.|=|+|++|+..|+.|..+|++|++        ||+..-...                     .+  ....
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i  302 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF  302 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence            3468999999999999999999999999999988        553321100                     00  0111


Q ss_pred             Chhhhh-cCCcEEEEeccCChhhhhccCHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615          123 NVYDLA-VNSDVLVVCCALTEQTHHIINKDVMAELG--KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV  192 (223)
Q Consensus       123 ~l~el~-~~aDiv~~~~p~t~~t~~li~~~~l~~mk--~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV  192 (223)
                      +.++++ ..||+++-|.     +.+.|+.+..+.+.  .-.+++--+.+ .+..+| .+.|.++.|. ++=|+
T Consensus       303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA-~~iL~~rGI~-~vPD~  367 (445)
T PRK14030        303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEA-IDKFIAAKQL-FAPGK  367 (445)
T ss_pred             CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHH-HHHHHHCCCE-EeCcc
Confidence            233444 3588887665     67888888777772  23467777888 455554 3667777665 33443

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.62  E-value=0.0004  Score=52.52  Aligned_cols=98  Identities=19%  Similarity=0.276  Sum_probs=59.4

Q ss_pred             CEEEEEec-ChHHHHHHHHHHh-CCCEE-EEEcCCCCCC-------------CCcccccChhhhhcCCcEEEEeccCChh
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQA-FGFII-SYNSRRKRPS-------------VLFPYCANVYDLAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~-~G~~V-~~~~~~~~~~-------------~~~~~~~~l~el~~~aDiv~~~~p~t~~  143 (223)
                      .+|+|+|+ |+||+.+++.+.. -|+++ .++++.....             .+.....++++++.++|+++-..  +|+
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~   78 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPD   78 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChH
Confidence            47999999 9999999999987 68885 4677766221             12334578999999999887665  333


Q ss_pred             -hhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          144 -THHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       144 -t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                       +...+ +..   ++.+.-+|-...|---++.+.++.+.+.
T Consensus        79 ~~~~~~-~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~~  115 (124)
T PF01113_consen   79 AVYDNL-EYA---LKHGVPLVIGTTGFSDEQIDELEELAKK  115 (124)
T ss_dssp             HHHHHH-HHH---HHHT-EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred             HhHHHH-HHH---HhCCCCEEEECCCCCHHHHHHHHHHhcc
Confidence             32222 222   2335566665566644444455544443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.61  E-value=0.00036  Score=61.26  Aligned_cols=112  Identities=17%  Similarity=0.101  Sum_probs=70.1

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCC-CEEEEEcCCCCCCC-------------Cc--c-c-ccChhhhhcCCcEEEEec
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFG-FIISYNSRRKRPSV-------------LF--P-Y-CANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~-------------~~--~-~-~~~l~el~~~aDiv~~~~  138 (223)
                      +..++|+|||.|.+|..++..+...| .++..+|.+.....             +.  . . ..+.+ .++.||+|+++.
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita   81 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA   81 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence            45779999999999999999998878 68889998764321             00  0 1 23445 679999999998


Q ss_pred             --cCChh-hh--------hccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCceEEE
Q 035615          139 --ALTEQ-TH--------HIIN--KDVMAELGKGGMIINVGRGALIDEKEMLQFLV--QGDINGVG  189 (223)
Q Consensus       139 --p~t~~-t~--------~li~--~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~--~~~i~~a~  189 (223)
                        |..+. ++        .++.  .+.+....|.+++|+++.-.-+-...+.+...  ..++.|.+
T Consensus        82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g  147 (319)
T PTZ00117         82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA  147 (319)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence              43331 11        1110  12334456788999986544333444444332  35566555

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.59  E-value=0.00017  Score=63.50  Aligned_cols=83  Identities=17%  Similarity=0.224  Sum_probs=57.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccccc------cChhhhhcCCcEEEEeccCChhhhh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYC------ANVYDLAVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~------~~l~el~~~aDiv~~~~p~t~~t~~  146 (223)
                      .|++|+|+|+|..|....+.++++|++|++++++.++.+     ++..+      ...+++-+.+|+++.++| ....  
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~--  242 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATL--  242 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhH--
Confidence            399999999999999999999999999999999987643     22211      112333334999999887 3321  


Q ss_pred             ccCHHHHhcCCCCcEEEEcC
Q 035615          147 IINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       147 li~~~~l~~mk~ga~lIN~a  166 (223)
                         ...++.+|++..++-++
T Consensus       243 ---~~~l~~l~~~G~~v~vG  259 (339)
T COG1064         243 ---EPSLKALRRGGTLVLVG  259 (339)
T ss_pred             ---HHHHHHHhcCCEEEEEC
Confidence               23444555555555444

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.58  E-value=0.00017  Score=64.74  Aligned_cols=88  Identities=16%  Similarity=0.293  Sum_probs=66.4

Q ss_pred             CCEEEEEecChHHHHHHHHHHh-C-CC-EEEEEcCCCCCCC-----------C---cccccChhhhhcCCcEEEEeccCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQA-F-GF-IISYNSRRKRPSV-----------L---FPYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~-~-G~-~V~~~~~~~~~~~-----------~---~~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      -++++|||.|..++.-++.+.. + .. +|.+|+|++.+..           +   +..+.+.++++++||+|+.+++.+
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~  234 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE  234 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence            4789999999999999988876 4 24 6999999875421           1   223578999999999999998754


Q ss_pred             h---hhhhccCHHHHhcCCCCcEEEEcCCCc
Q 035615          142 E---QTHHIINKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       142 ~---~t~~li~~~~l~~mk~ga~lIN~arg~  169 (223)
                      .   ++..+|..+.   +|+|+.++.++.-+
T Consensus       235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~~e  262 (379)
T PRK06199        235 TGDPSTYPYVKREW---VKPGAFLLMPAACR  262 (379)
T ss_pred             CCCCCcCcEecHHH---cCCCcEEecCCccc
Confidence            3   3457787765   47999888776644

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=97.57  E-value=0.00018  Score=63.61  Aligned_cols=59  Identities=17%  Similarity=0.183  Sum_probs=47.3

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCC-c------ccc---cChhhhhcCCcEEEEe
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVL-F------PYC---ANVYDLAVNSDVLVVC  137 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~-~------~~~---~~l~el~~~aDiv~~~  137 (223)
                      ++||||||-|..|++++...+.+|++|++.|+.+..... .      ..+   ..+.++++.||+|..-
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~E   69 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYE   69 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEe
Confidence            479999999999999999999999999999987764321 0      112   3577899999999764

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.56  E-value=0.00028  Score=52.88  Aligned_cols=85  Identities=15%  Similarity=0.185  Sum_probs=53.1

Q ss_pred             EEEEEe-cChHHHHHHHHHHhC-CCEEEEE-cCCCCCCC-----C--cc--cccChh-hhh--cCCcEEEEeccCChhhh
Q 035615           81 QVGIVR-LGNIGSEVLNRLQAF-GFIISYN-SRRKRPSV-----L--FP--YCANVY-DLA--VNSDVLVVCCALTEQTH  145 (223)
Q Consensus        81 ~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~-~~~~~~~~-----~--~~--~~~~l~-el~--~~aDiv~~~~p~t~~t~  145 (223)
                      +++|+| .|.+|+.+++.+... ++++..+ ++......     .  ..  ...+.+ +.+  .++|+|++|+|.... .
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~-~   79 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVS-K   79 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHH-H
Confidence            589999 599999999999874 7887654 43321111     0  10  001111 222  489999999996533 3


Q ss_pred             hccCHHHHhcCCCCcEEEEcCC
Q 035615          146 HIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      ..+. .....+++|.++|+++.
T Consensus        80 ~~~~-~~~~~~~~g~~viD~s~  100 (122)
T smart00859       80 EIAP-LLPKAAEAGVKVIDLSS  100 (122)
T ss_pred             HHHH-HHHhhhcCCCEEEECCc
Confidence            3221 23455789999999973

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.56  E-value=0.00015  Score=59.80  Aligned_cols=67  Identities=12%  Similarity=0.058  Sum_probs=48.3

Q ss_pred             CccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------Cccc--ccChhhhhcCCcEEEEecc
Q 035615           73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------LFPY--CANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~~--~~~l~el~~~aDiv~~~~p  139 (223)
                      ..-+|+|++|.|||.|.+|..-++.|..+|++|.++++...+..       ....  -.--.+.+..+|+|+.+..
T Consensus         3 ~~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~   78 (205)
T TIGR01470         3 VFANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATD   78 (205)
T ss_pred             eEEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCC
Confidence            44579999999999999999999999999999999988654221       1110  0001345678888877654

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.55  E-value=0.00064  Score=60.78  Aligned_cols=131  Identities=11%  Similarity=0.137  Sum_probs=90.0

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----------------------C--cccccChhhhhcCCcEE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----------------------L--FPYCANVYDLAVNSDVL  134 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----------------------~--~~~~~~l~el~~~aDiv  134 (223)
                      ++|.|+|.|-+|-..+..+..+|++|+.+|..+.+.+                       .  .....+.++.++++|++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~   80 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV   80 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence            5899999999999999999999999999987654311                       0  22346788889999999


Q ss_pred             EEeccCChhhhhccC--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee-CCCCCCCCCC----
Q 035615          135 VVCCALTEQTHHIIN--------KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD-VFENDPNVPK----  201 (223)
Q Consensus       135 ~~~~p~t~~t~~li~--------~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD-V~~~EP~~~~----  201 (223)
                      ++++|..+...+-+|        ++..+.++..+++|+=|+-.+=-.+.+.+.+.+..-.. -.+ ++.+|=|...    
T Consensus        81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~  159 (414)
T COG1004          81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVY  159 (414)
T ss_pred             EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhh
Confidence            999985443344333        45666777779999999888777777777666554322 222 2444433321    


Q ss_pred             CCCCCCceEE
Q 035615          202 EPLRLDNIVL  211 (223)
Q Consensus       202 ~l~~~~nv~~  211 (223)
                      .++.-+++++
T Consensus       160 D~~~PdRIVi  169 (414)
T COG1004         160 DFLYPDRIVI  169 (414)
T ss_pred             hccCCCeEEE
Confidence            3444556654

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.55  E-value=0.00099  Score=57.90  Aligned_cols=110  Identities=11%  Similarity=0.157  Sum_probs=75.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCC--CCCCCcccccChhhhhcCCcEEEEeccCChhh---h-------
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRK--RPSVLFPYCANVYDLAVNSDVLVVCCALTEQT---H-------  145 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~--~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t---~-------  145 (223)
                      .+++++|||-=.--..++++|.+.|++|..+.-..  ....++....+.+++++++|+|+.-+|.+.+.   +       
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~   80 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK   80 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence            37899999999989999999999999987643322  22335555567788999999999988865322   1       


Q ss_pred             hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615          146 HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE  194 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~  194 (223)
                      --++++.++.|+++..++ ++.+.   .. +-+.++++++.  .+|..+
T Consensus        81 ~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~--~~~~~~  122 (296)
T PRK08306         81 LVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRK--LVELFE  122 (296)
T ss_pred             CcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCe--EEEEec
Confidence            113578999999998444 33332   22 34566678887  345443

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.53  E-value=0.00029  Score=61.87  Aligned_cols=103  Identities=17%  Similarity=0.172  Sum_probs=65.8

Q ss_pred             CCEEEEEecChHHHHHHHHHHhC-CCEEE-EEcCCC-CCC-C--CcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAF-GFIIS-YNSRRK-RPS-V--LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~-~~~-~--~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      ..+|||||+|+||+.+++.+... ++++. ++++++ ... .  +.....+.++++.+.|+|++|.|....-     +..
T Consensus         3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th~-----~~~   77 (324)
T TIGR01921         3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATDI-----PEQ   77 (324)
T ss_pred             CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccCH-----HHH
Confidence            36899999999999999998765 78876 468774 221 1  2222356777788999999999854221     334


Q ss_pred             HhcCCCCcEEEEcCCCc--ccC-HHHHHHHHHc-CCce
Q 035615          153 MAELGKGGMIINVGRGA--LID-EKEMLQFLVQ-GDIN  186 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~--~vd-~~al~~aL~~-~~i~  186 (223)
                      ...|+.|.-+|+..--.  +-+ .+.|-++-++ |++.
T Consensus        78 ~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs  115 (324)
T TIGR01921        78 APYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS  115 (324)
T ss_pred             HHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence            44566677777775321  123 2334444453 5665

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=97.53  E-value=0.00041  Score=67.20  Aligned_cols=111  Identities=13%  Similarity=0.108  Sum_probs=78.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhcC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAVN  130 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~  130 (223)
                      ++|+|||.|.||..+|..+...|++|..+|++++...                +             .....++ +.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            5799999999999999999999999999998765321                0             0112344 34789


Q ss_pred             CcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615          131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE  194 (223)
Q Consensus       131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~  194 (223)
                      ||+|+=++|..-+.+.-+-++.-+.++++++|-...  +-++...|.+.++. .-+..++--|.
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnT--S~l~i~~ia~~~~~-p~r~ig~Hff~  453 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNT--STISISLLAKALKR-PENFCGMHFFN  453 (714)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECC--CCCCHHHHHhhcCC-cccEEEEecCC
Confidence            999999999887777666566667789998876432  33455666666653 22334555553

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.53  E-value=0.00026  Score=58.21  Aligned_cols=70  Identities=17%  Similarity=0.133  Sum_probs=49.9

Q ss_pred             CCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------C-ccc-ccCh-hhhhcCCcEEEEeccCC
Q 035615           72 PLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------L-FPY-CANV-YDLAVNSDVLVVCCALT  141 (223)
Q Consensus        72 ~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~-~~~-~~~l-~el~~~aDiv~~~~p~t  141 (223)
                      |..-+|+|++|.|||.|.+|...++.|...|++|.++++...+..      + ... ...+ ++.+..+|+|+.++...
T Consensus         3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~   81 (202)
T PRK06718          3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP   81 (202)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH
Confidence            345679999999999999999999999999999999987643210      1 100 0111 33467889888876533

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=97.52  E-value=0.00032  Score=68.15  Aligned_cols=111  Identities=12%  Similarity=0.095  Sum_probs=80.4

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhcC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAVN  130 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~  130 (223)
                      ++|+|||.|.||..+|..+...|++|..+|++++...                +             .....+++ .+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            5899999999999999999999999999998865321                0             01123444 5789


Q ss_pred             CcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615          131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE  194 (223)
Q Consensus       131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~  194 (223)
                      ||+|+=++|..-+.+.-+-++.=+.++++++|..  .-+-++...|.+.++.. -+..++.-|.
T Consensus       415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilas--NTSsl~i~~la~~~~~p-~r~ig~Hff~  475 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIAS--NTSALPIKDIAAVSSRP-EKVIGMHYFS  475 (737)
T ss_pred             CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEE--cCCCCCHHHHHhhcCCc-cceEEEeccC
Confidence            9999999998888777666777778899988763  22335566677776542 3335776664

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.52  E-value=0.0004  Score=67.24  Aligned_cols=111  Identities=10%  Similarity=0.070  Sum_probs=79.5

Q ss_pred             CEEEEEecChHHHHHHHHHH-hCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQ-AFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAV  129 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~  129 (223)
                      ++|+|||.|.||..+|..+. ..|++|..+|++++...                +             .....++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            68999999999999999987 78999999998764311                0             0112344 4578


Q ss_pred             CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615          130 NSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE  194 (223)
Q Consensus       130 ~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~  194 (223)
                      .||+|+=++|.+.+.+.-+-++.=+.++|+++|...  .+-+....|.+.++.. -+..++.-|.
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasn--TS~l~i~~la~~~~~p-~r~ig~Hff~  450 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASN--TSSLPIGQIAAAAARP-EQVIGLHYFS  450 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEEC--CCCCCHHHHHHhcCcc-cceEEEecCC
Confidence            999999999988887776666777778999988743  3345556677766432 2335666553

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.52  E-value=0.00016  Score=62.89  Aligned_cols=106  Identities=22%  Similarity=0.317  Sum_probs=67.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------Ccccc-c---C---hhhhhcCCcEEEEeccCChhh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFPYC-A---N---VYDLAVNSDVLVVCCALTEQT  144 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~-~---~---l~el~~~aDiv~~~~p~t~~t  144 (223)
                      .|+.+||+|+|.+|+.-.+.+++||++|+++|++.++.+      ++..+ .   +   .+++...-|.++-+++.-  .
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a  258 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A  258 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c
Confidence            799999999999999999999999999999999874332      22111 1   1   234455556665555422  2


Q ss_pred             hhccCHHHHhcCCCCcEEEEcC------------------------CCcccCHHHHHHHHHcCCce
Q 035615          145 HHIINKDVMAELGKGGMIINVG------------------------RGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~a------------------------rg~~vd~~al~~aL~~~~i~  186 (223)
                      ++-+ ...++.||++..+|-++                        =|+..|.+.+++...++.|.
T Consensus       259 ~~~~-~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik  323 (360)
T KOG0023|consen  259 EHAL-EPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVGSRKETQEALDFVARGLIK  323 (360)
T ss_pred             ccch-HHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEEEeeccccHHHHHHHHHHHHcCCCc
Confidence            2222 34555666666555543                        24455666666666666654

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.51  E-value=0.00036  Score=60.92  Aligned_cols=111  Identities=18%  Similarity=0.180  Sum_probs=70.5

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------------Cc---c-cccChhhhhcCCcEEEEeccCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------------LF---P-YCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~~---~-~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      ++|+|||.|.||..+|..+...|. +|+.+|.......             ..   . ...+.++ +++||+|+++++..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p   80 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP   80 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence            589999999999999999988775 8999987543211             00   1 1245666 78999999998732


Q ss_pred             hh---h--------hhccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCceEEE--ee
Q 035615          142 EQ---T--------HHIIN--KDVMAELGKGGMIINVGRGALIDEKEMLQF--LVQGDINGVG--LD  191 (223)
Q Consensus       142 ~~---t--------~~li~--~~~l~~mk~ga~lIN~arg~~vd~~al~~a--L~~~~i~~a~--lD  191 (223)
                      ..   +        ..++.  .+.+....+++++|+++.--=+-...+.+.  +...++.|.+  ||
T Consensus        81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            11   1        11221  122333457889999876554444555555  4455666664  56

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK14031 glutamate dehydrogenase; Provisional

Probab=97.51  E-value=0.0015  Score=59.78  Aligned_cols=106  Identities=13%  Similarity=0.060  Sum_probs=70.5

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC---C----------------------Cc-----ccccC
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS---V----------------------LF-----PYCAN  123 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---~----------------------~~-----~~~~~  123 (223)
                      +.+|.|+||.|.|+|++|+..|+.|..+|++|++++.+....   .                      ++     ....+
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~  302 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE  302 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence            446999999999999999999999999999998754421110   0                      00     01113


Q ss_pred             hhhhh-cCCcEEEEeccCChhhhhccCHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          124 VYDLA-VNSDVLVVCCALTEQTHHIINKDVMAELGK-GG-MIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       124 l~el~-~~aDiv~~~~p~t~~t~~li~~~~l~~mk~-ga-~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      .++++ ..||+++-|.     +.+.|+++..++++. +. +++--+.+ .+..++. +.|.++.|.
T Consensus       303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~  361 (444)
T PRK14031        303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL  361 (444)
T ss_pred             CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE
Confidence            33443 4688887665     578899988888865 34 55666666 5666655 445555554

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.48  E-value=0.00029  Score=61.40  Aligned_cols=83  Identities=16%  Similarity=0.090  Sum_probs=63.5

Q ss_pred             CCEEEEEecChHHHHHHHHHHh-CCC-EEEEEcCCCCCCC----------C--cccccChhhhhcCCcEEEEeccCChhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQA-FGF-IISYNSRRKRPSV----------L--FPYCANVYDLAVNSDVLVVCCALTEQT  144 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDiv~~~~p~t~~t  144 (223)
                      -+++||||.|..|+.-++.+.. +.. +|.+|+|++.+..          +  .....+.++++.+||+|+.++|.   +
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s---~  193 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS---D  193 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC---C
Confidence            5889999999999998887764 444 5899999976532          1  22356899999999999998874   4


Q ss_pred             hhccCHHHHhcCCCCcEEEEcCC
Q 035615          145 HHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      ..+|+.+.   +|||+.+.-+|.
T Consensus       194 ~P~~~~~~---l~pg~hV~aiGs  213 (301)
T PRK06407        194 TPIFNRKY---LGDEYHVNLAGS  213 (301)
T ss_pred             CcEecHHH---cCCCceEEecCC
Confidence            67787765   478887777664

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=97.46  E-value=0.001  Score=52.52  Aligned_cols=96  Identities=13%  Similarity=0.224  Sum_probs=70.1

Q ss_pred             CCCEEEEEe--cChHHHHHHHHHHhCCCEEEEEcCCCC--CC----------------CCcccccChhhhhcCCcEEEEe
Q 035615           78 GGMQVGIVR--LGNIGSEVLNRLQAFGFIISYNSRRKR--PS----------------VLFPYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        78 ~g~~vgIiG--~G~iG~~~a~~l~~~G~~V~~~~~~~~--~~----------------~~~~~~~~l~el~~~aDiv~~~  137 (223)
                      .|+||++||  .+++.++++..+..||+++.+..+..-  +.                .......++++.++.+|+|...
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~   80 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD   80 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence            489999999  389999999999999999888887652  11                0123457899999999999876


Q ss_pred             ccC----Chh-------hhhccCHHHHhcCCCCcEEEEcC---CCcccCH
Q 035615          138 CAL----TEQ-------THHIINKDVMAELGKGGMIINVG---RGALIDE  173 (223)
Q Consensus       138 ~p~----t~~-------t~~li~~~~l~~mk~ga~lIN~a---rg~~vd~  173 (223)
                      .--    .+.       ....++++.++.+|++++|..+.   ||.=|+.
T Consensus        81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~~  130 (158)
T PF00185_consen   81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLPANRGEEVSD  130 (158)
T ss_dssp             SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBEH
T ss_pred             CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeCH
Confidence            543    110       12567999999999999999887   4544443

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=97.46  E-value=0.00014  Score=54.04  Aligned_cols=100  Identities=16%  Similarity=0.286  Sum_probs=64.8

Q ss_pred             EEEEEecChHHHHHHHHHHhC--CCEEE-EEcCCCCCCC------CcccccChhhhhc--CCcEEEEeccCChhhhhccC
Q 035615           81 QVGIVRLGNIGSEVLNRLQAF--GFIIS-YNSRRKRPSV------LFPYCANVYDLAV--NSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~--G~~V~-~~~~~~~~~~------~~~~~~~l~el~~--~aDiv~~~~p~t~~t~~li~  149 (223)
                      ++||||+|.+|+.....+...  ++++. ++|+++....      +...+.+++++++  +.|+|+++.|........  
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~--   79 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIA--   79 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHH--
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHH--
Confidence            799999999999999888766  55654 6788764332      3446789999998  799999999854332222  


Q ss_pred             HHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHcCCc
Q 035615          150 KDVMAELGKG-GMIINVG-RGALIDEKEMLQFLVQGDI  185 (223)
Q Consensus       150 ~~~l~~mk~g-a~lIN~a-rg~~vd~~al~~aL~~~~i  185 (223)
                      ...++   .| .+++.-- --.+-+.+.|.++.++.+.
T Consensus        80 ~~~l~---~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~  114 (120)
T PF01408_consen   80 KKALE---AGKHVLVEKPLALTLEEAEELVEAAKEKGV  114 (120)
T ss_dssp             HHHHH---TTSEEEEESSSSSSHHHHHHHHHHHHHHTS
T ss_pred             HHHHH---cCCEEEEEcCCcCCHHHHHHHHHHHHHhCC
Confidence            23333   33 3444421 1234455666666665544

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=97.44  E-value=0.00082  Score=56.85  Aligned_cols=104  Identities=22%  Similarity=0.301  Sum_probs=70.3

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEE--------cCCCCCCC----------C-cccc----------cChh-
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYN--------SRRKRPSV----------L-FPYC----------ANVY-  125 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~--------~~~~~~~~----------~-~~~~----------~~l~-  125 (223)
                      +++|+++.|-|+|++|+.+|+.|...|++|++.        |+..-..+          . ...+          .+-+ 
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  108 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD  108 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence            589999999999999999999999999998765        32211000          1 1111          1221 


Q ss_pred             hhh-cCCcEEEEeccCChhhhhccCHHHHh-cCCCCc-EEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          126 DLA-VNSDVLVVCCALTEQTHHIINKDVMA-ELGKGG-MIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       126 el~-~~aDiv~~~~p~t~~t~~li~~~~l~-~mk~ga-~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      +++ ..||+++-|.     ..+.|+++... .+++++ +++-.+.+.+- .++.. .|+++.|.
T Consensus       109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI~  165 (244)
T PF00208_consen  109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGIL  165 (244)
T ss_dssp             HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-E
T ss_pred             ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCCE
Confidence            555 5899999885     46678888888 777665 55667777765 44444 88888775

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.44  E-value=0.0007  Score=65.46  Aligned_cols=111  Identities=14%  Similarity=0.122  Sum_probs=77.6

Q ss_pred             CEEEEEecChHHHHHHHHHH-hCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQ-AFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAV  129 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~  129 (223)
                      ++|+|||.|.||+.+|..+. ..|++|..+|++++...                +             .....++ +.++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence            58999999999999999887 58999999998864211                0             0112344 4578


Q ss_pred             CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615          130 NSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE  194 (223)
Q Consensus       130 ~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~  194 (223)
                      .||+|+=++|...+.+.-+-++.-+.++++++|....  +-+....|.+.++. .-+..++.-|.
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnT--S~l~i~~la~~~~~-p~r~~g~Hffn  445 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNT--SSLPIGQIAAAASR-PENVIGLHYFS  445 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCC--CCCCHHHHHHhcCC-cccEEEEecCC
Confidence            9999999999888877766666767788988876332  23445566666643 22335666553

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.38  E-value=0.00044  Score=61.41  Aligned_cols=85  Identities=15%  Similarity=0.192  Sum_probs=62.8

Q ss_pred             CCEEEEEecChHHHHHHHHHH-hCCC-EEEEEcCCCCCCC---------C--cccccChhhhhcCCcEEEEeccCChhhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQ-AFGF-IISYNSRRKRPSV---------L--FPYCANVYDLAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~---------~--~~~~~~l~el~~~aDiv~~~~p~t~~t~  145 (223)
                      -++++|||.|..++.-++.+. -+.. +|.+|+|+++...         +  +....+.++++++||+|+.++|.+ +..
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~  207 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA  207 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence            578999999999998887665 3455 5899999976532         1  223578999999999999998733 223


Q ss_pred             hccCHHHHhcCCCCcEEEEcCC
Q 035615          146 HIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      .+|..+.   +|+|+.+.-+|.
T Consensus       208 Pvl~~~~---lkpG~hV~aIGs  226 (346)
T PRK07589        208 TILTDDM---VEPGMHINAVGG  226 (346)
T ss_pred             ceecHHH---cCCCcEEEecCC
Confidence            5676654   589998887763

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.36  E-value=0.0013  Score=55.87  Aligned_cols=60  Identities=18%  Similarity=0.316  Sum_probs=45.6

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhC-CCEEE-EEcCCCCCCC-----CcccccChhhhhcCCcEEEEecc
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAF-GFIIS-YNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      .+|+|+|+ |+||+.+++.+... ++++. ++|+.++...     +...+.+++++++.+|+|+.++|
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~   69 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT   69 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence            58999998 99999999998764 78865 5776654321     22345788999989999997775

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=97.34  E-value=0.0058  Score=55.95  Aligned_cols=106  Identities=14%  Similarity=0.116  Sum_probs=67.6

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEE-cCCCC----------CC--------------CCc------cccc
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYN-SRRKR----------PS--------------VLF------PYCA  122 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~-~~~~~----------~~--------------~~~------~~~~  122 (223)
                      +.+|+|+||.|=|+|++|+..|+.|..+|.+|+.+ |.+..          ..              ..+      ..+.
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~  311 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV  311 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence            35689999999999999999999999999998844 43310          00              000      0111


Q ss_pred             Chhhhh-cCCcEEEEeccCChhhhhccCHHHHhcC-CCCc-EEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          123 NVYDLA-VNSDVLVVCCALTEQTHHIINKDVMAEL-GKGG-MIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       123 ~l~el~-~~aDiv~~~~p~t~~t~~li~~~~l~~m-k~ga-~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      +-++++ -.||+.+-|.     +.+.|+.+..+.+ +.++ +++--+.+.+-. + -.+.|+++.|.
T Consensus       312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~-e-A~~~L~~~GI~  371 (454)
T PTZ00079        312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTI-E-ATHLFKKNGVI  371 (454)
T ss_pred             CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCH-H-HHHHHHHCCcE
Confidence            222333 3688877664     5777888776655 3344 455666676644 3 34666776665

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.34  E-value=0.0002  Score=58.84  Aligned_cols=37  Identities=24%  Similarity=0.219  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR  111 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  111 (223)
                      ..|.+++|.|+|+|.+|..+++.|...|+ ++..+|+.
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            46899999999999999999999999998 68888766

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=97.32  E-value=0.00065  Score=57.81  Aligned_cols=97  Identities=21%  Similarity=0.163  Sum_probs=67.3

Q ss_pred             CccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCC-----------CCcccccChhhhhcCCcEEEEeccC
Q 035615           73 LGFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPS-----------VLFPYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        73 ~~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----------~~~~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      .|.+|+..|++|+|+ |.||..+|+.|.+.+.+....-|.....           .+.....+++..+.+.|+++.... 
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs-  239 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVAS-  239 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEee-
Confidence            578999999999996 9999999999999888765554332211           122234566665666666655442 


Q ss_pred             ChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHH
Q 035615          141 TEQTHHIINKDVMAELGKGGMIINVGRGALIDEK  174 (223)
Q Consensus       141 t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~  174 (223)
                      + .+-..|+.+   .+|||+++|+-++-.=+|+.
T Consensus       240 ~-~~g~~I~pq---~lkpg~~ivD~g~P~dvd~~  269 (351)
T COG5322         240 M-PKGVEIFPQ---HLKPGCLIVDGGYPKDVDTS  269 (351)
T ss_pred             c-CCCceechh---hccCCeEEEcCCcCcccccc
Confidence            1 234456654   46999999999998877764

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.30  E-value=0.0007  Score=57.68  Aligned_cols=111  Identities=16%  Similarity=0.238  Sum_probs=70.8

Q ss_pred             EEEEec-ChHHHHHHHHHHhCC----CEEEEEcCCCCCCCC----------c------ccccChhhhhcCCcEEEEeccC
Q 035615           82 VGIVRL-GNIGSEVLNRLQAFG----FIISYNSRRKRPSVL----------F------PYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        82 vgIiG~-G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~----------~------~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      |+|||. |.+|..++..+...|    .++..+|...+....          .      ....++.+.+++||+|+++.-.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            589999 999999999998777    689999987654321          0      0124557889999999996521


Q ss_pred             --Ch---------hhhhccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCceEEE-eeC
Q 035615          141 --TE---------QTHHIIN--KDVMAELGKGGMIINVGRGALIDEKEMLQF--LVQGDINGVG-LDV  192 (223)
Q Consensus       141 --t~---------~t~~li~--~~~l~~mk~ga~lIN~arg~~vd~~al~~a--L~~~~i~~a~-lDV  192 (223)
                        .+         .+..++.  .+.+.+..|.+++||.+.--=+-...+.+.  +...++.|.+ +|.
T Consensus        81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~  148 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDP  148 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence              11         1111111  123444568899999963222333344444  4567788888 775

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.28  E-value=0.0008  Score=50.51  Aligned_cols=83  Identities=19%  Similarity=0.265  Sum_probs=51.0

Q ss_pred             EEEEEe-cChHHHHHHHHHHh-CCCEEE-EEcCCCCCCC----C------cc--cc-cChhhhhcCCcEEEEeccCChhh
Q 035615           81 QVGIVR-LGNIGSEVLNRLQA-FGFIIS-YNSRRKRPSV----L------FP--YC-ANVYDLAVNSDVLVVCCALTEQT  144 (223)
Q Consensus        81 ~vgIiG-~G~iG~~~a~~l~~-~G~~V~-~~~~~~~~~~----~------~~--~~-~~l~el~~~aDiv~~~~p~t~~t  144 (223)
                      +|+||| .|.+|+.+.+.|.. ..+++. +++++.....    .      ..  .. ....+.+..+|+|++|+|.... 
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~-   79 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGAS-   79 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHH-
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHH-
Confidence            699999 99999999999986 345644 4555542211    0      00  01 1122445999999999984322 


Q ss_pred             hhccCHHHHhcCCCCcEEEEcCCC
Q 035615          145 HHIINKDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~arg  168 (223)
                      .... .+.   +++|..+|+.+.-
T Consensus        80 ~~~~-~~~---~~~g~~ViD~s~~   99 (121)
T PF01118_consen   80 KELA-PKL---LKAGIKVIDLSGD   99 (121)
T ss_dssp             HHHH-HHH---HHTTSEEEESSST
T ss_pred             HHHH-HHH---hhCCcEEEeCCHH
Confidence            2221 222   4788999998743

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=97.26  E-value=0.0013  Score=59.01  Aligned_cols=101  Identities=20%  Similarity=0.288  Sum_probs=71.9

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCC------------------CCC------CcccccChhhhhc-
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKR------------------PSV------LFPYCANVYDLAV-  129 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~------------------~~~------~~~~~~~l~el~~-  129 (223)
                      .+|+|+||.|=|+|+.|+..|+.+...|.+|+++|.+..                  ...      +. .+.+-++++. 
T Consensus       203 ~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga-~~i~~~e~~~~  281 (411)
T COG0334         203 DDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGA-EYITNEELLEV  281 (411)
T ss_pred             CCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCc-eEccccccccc
Confidence            358999999999999999999999999999988776554                  100      11 1223355553 


Q ss_pred             CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          130 NSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       130 ~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      .||+++=|.     +.+.|+.+..+++|-. +++--+.|++- .+|--..++.|
T Consensus       282 ~cDIl~PcA-----~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erG  328 (411)
T COG0334         282 DCDILIPCA-----LENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERG  328 (411)
T ss_pred             cCcEEcccc-----cccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCC
Confidence            689886554     6788998888888865 78888888876 33333333444

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=97.25  E-value=0.0024  Score=54.14  Aligned_cols=90  Identities=18%  Similarity=0.214  Sum_probs=60.1

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGK  158 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~  158 (223)
                      --++-|+|.|.+++.+++.++.+|++|.++|+.+.....        ..+..++.+....|          .+.+..+.+
T Consensus       100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~--------~~~~~~~~~~~~~~----------~~~~~~~~~  161 (246)
T TIGR02964       100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPE--------DLPDGVATLVTDEP----------EAEVAEAPP  161 (246)
T ss_pred             CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccc--------cCCCCceEEecCCH----------HHHHhcCCC
Confidence            358999999999999999999999999998866541110        11123433322211          122223456


Q ss_pred             CcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          159 GGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       159 ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      ...+|=+.++.-.|.+.|..+|++....
T Consensus       162 ~t~vvi~th~h~~D~~~L~~aL~~~~~~  189 (246)
T TIGR02964       162 GSYFLVLTHDHALDLELCHAALRRGDFA  189 (246)
T ss_pred             CcEEEEEeCChHHHHHHHHHHHhCCCCc
Confidence            6777777788888888888888554443

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.24  E-value=0.00028  Score=60.92  Aligned_cols=66  Identities=15%  Similarity=0.187  Sum_probs=50.0

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCCc----------ccc---cChhhhhcCCcEEEEeccCC
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLF----------PYC---ANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~----------~~~---~~l~el~~~aDiv~~~~p~t  141 (223)
                      .++++++.|||.|.+|++++..|...|+ +|.+++|+.++.+..          ...   .++.+.+.++|+|+.++|..
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g  201 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD  201 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence            4679999999999999999999999998 599999986543210          011   12335567899999998864

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.23  E-value=0.0011  Score=57.32  Aligned_cols=92  Identities=11%  Similarity=0.071  Sum_probs=60.4

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCC---CCC-----------C--cc--ccc---ChhhhhcCCcE
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKR---PSV-----------L--FP--YCA---NVYDLAVNSDV  133 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~---~~~-----------~--~~--~~~---~l~el~~~aDi  133 (223)
                      ++.++++.|+|.|.+|++++..|...|++ |.+++|+.+   +.+           .  ..  ...   ++++.++.+|+
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di  202 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI  202 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence            46789999999999999999999999996 999999752   110           0  00  011   23345667899


Q ss_pred             EEEeccCCh--hhhh-ccCHHHHhcCCCCcEEEEcCCCc
Q 035615          134 LVVCCALTE--QTHH-IINKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       134 v~~~~p~t~--~t~~-li~~~~l~~mk~ga~lIN~arg~  169 (223)
                      |+.++|..-  .... .+.  ....++++.+++++--.+
T Consensus       203 lINaTp~Gm~~~~~~~~~~--~~~~l~~~~~v~D~vY~P  239 (289)
T PRK12548        203 LVNATLVGMKPNDGETNIK--DTSVFRKDLVVADTVYNP  239 (289)
T ss_pred             EEEeCCCCCCCCCCCCCCC--cHHhcCCCCEEEEecCCC
Confidence            999988541  1111 110  123456777888876555

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=97.23  E-value=0.0036  Score=54.70  Aligned_cols=99  Identities=14%  Similarity=0.217  Sum_probs=72.6

Q ss_pred             ccCCCEEEEEec---ChHHHHHHHHHHhCCCEEEEEcCCCCCCC---CcccccChhhhhcCCcEEEEeccC--------C
Q 035615           76 KLGGMQVGIVRL---GNIGSEVLNRLQAFGFIISYNSRRKRPSV---LFPYCANVYDLAVNSDVLVVCCAL--------T  141 (223)
Q Consensus        76 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---~~~~~~~l~el~~~aDiv~~~~p~--------t  141 (223)
                      .+.|++|+++|=   +++.++++..+..+|+++.+..|..-...   ......++++.++.+|+|....=.        .
T Consensus       153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~~  232 (305)
T PRK00856        153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMMLRVQKERMDGGLL  232 (305)
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEECCcccccccccch
Confidence            378999999996   69999999999999999998877543221   224467899999999999775310        0


Q ss_pred             hh-----hhhccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 035615          142 EQ-----THHIINKDVMAELGKGGMIINVG---RGALIDEK  174 (223)
Q Consensus       142 ~~-----t~~li~~~~l~~mk~ga~lIN~a---rg~~vd~~  174 (223)
                      ++     -...++++.++..|++++|.-+-   ||.=|+.+
T Consensus       233 ~~~~~~~~~y~v~~~ll~~a~~~~~~mHcLPa~Rg~Ev~~~  273 (305)
T PRK00856        233 PSYEEYKRSYGLTAERLALAKPDAIVMHPGPVNRGVEIASD  273 (305)
T ss_pred             HHHHHHhccCccCHHHHhhcCCCCEEECCCCCCCCCccCHH
Confidence            11     12456888999999999888765   56544443

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.21  E-value=0.0013  Score=59.65  Aligned_cols=104  Identities=13%  Similarity=0.109  Sum_probs=64.0

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc-----ccccChhhhhcCCcEEEEeccCChhhh--------
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF-----PYCANVYDLAVNSDVLVVCCALTEQTH--------  145 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~-----~~~~~l~el~~~aDiv~~~~p~t~~t~--------  145 (223)
                      .++|.|||+|.+|.++|+.|+..|++|.++|++.......     ......+.+.+++|+++.+.+..+...        
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~   82 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS   82 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence            4689999999999999999999999999999765432210     011223344577998887765433211        


Q ss_pred             --hccCHHH--Hhc--C-CCCcEEEEcCCCcccCHHHHHHHHHc
Q 035615          146 --HIINKDV--MAE--L-GKGGMIINVGRGALIDEKEMLQFLVQ  182 (223)
Q Consensus       146 --~li~~~~--l~~--m-k~ga~lIN~arg~~vd~~al~~aL~~  182 (223)
                        .++.+..  +..  + +...+=|--+.|+.--.+-|...|+.
T Consensus        83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~  126 (418)
T PRK00683         83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR  126 (418)
T ss_pred             CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence              1222211  111  1 11234555556777767777777765

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.20  E-value=0.0015  Score=56.86  Aligned_cols=87  Identities=17%  Similarity=0.230  Sum_probs=57.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCCC-------------c--ccccChhhhhcCCcEEEEeccCCh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSVL-------------F--PYCANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~-------------~--~~~~~l~el~~~aDiv~~~~p~t~  142 (223)
                      ++|+|||.|.+|+.+|..|...|.  ++..+|+..+...+             .  .......+.++.||+|+++.....
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~   80 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ   80 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence            489999999999999999998884  79999987664321             0  011122345789999999985421


Q ss_pred             ---hhh--------hccC--HHHHhcCCCCcEEEEcC
Q 035615          143 ---QTH--------HIIN--KDVMAELGKGGMIINVG  166 (223)
Q Consensus       143 ---~t~--------~li~--~~~l~~mk~ga~lIN~a  166 (223)
                         .++        .++.  .+.+....|.+++|+++
T Consensus        81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs  117 (306)
T cd05291          81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS  117 (306)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence               111        1111  12344456788999987

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.18  E-value=0.0011  Score=55.37  Aligned_cols=88  Identities=20%  Similarity=0.214  Sum_probs=59.1

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------------C-----------------c--c--
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------------L-----------------F--P--  119 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~-----------------~--~--  119 (223)
                      ..|.+++|.|+|+|.+|..+|+.|...|+ ++..+|...-...             +                 .  .  
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~   96 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY   96 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            46899999999999999999999999999 5777764321100             0                 0  0  


Q ss_pred             --c--ccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcC
Q 035615          120 --Y--CANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       120 --~--~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                        .  ..+++++++++|+|+.|+. +.+++..+++...+.   +.-+|..+
T Consensus        97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~ip~i~~g  143 (228)
T cd00757          97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVKL---GKPLVSGA  143 (228)
T ss_pred             cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEEE
Confidence              0  1234567888998888765 566777776554432   34456554

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.18  E-value=0.00053  Score=53.04  Aligned_cols=105  Identities=18%  Similarity=0.189  Sum_probs=69.7

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccc-------------c-ccChhhhhcCCcEEEEeccCCh
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFP-------------Y-CANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~-------------~-~~~l~el~~~aDiv~~~~p~t~  142 (223)
                      |.|+|.|.||.-+|-+|+..|.+|..+.|.. ..+     +..             . ..+..+.....|+|++++... 
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~-   78 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY-   78 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-
Confidence            6899999999999999999999999998876 211     110             0 111124577899999999744 


Q ss_pred             hhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEe
Q 035615          143 QTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGL  190 (223)
Q Consensus       143 ~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~l  190 (223)
                      ++...+. .....+++++.++-.-.| +-.++.+.+.+...++.++..
T Consensus        79 ~~~~~l~-~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~~  124 (151)
T PF02558_consen   79 QLEQALQ-SLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGVT  124 (151)
T ss_dssp             GHHHHHH-HHCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEEE
T ss_pred             chHHHHH-HHhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEEE
Confidence            4444443 355556677777766666 455677777775556654443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.17  E-value=0.00095  Score=59.10  Aligned_cols=78  Identities=18%  Similarity=0.140  Sum_probs=55.8

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCC--------------------------------CCcc--
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPS--------------------------------VLFP--  119 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~--------------------------------~~~~--  119 (223)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|+..-..                                ....  
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~   99 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV   99 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence            45899999999999999999999999998 677787653110                                0000  


Q ss_pred             ------cccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615          120 ------YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus       120 ------~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                            ...+++++++++|+|+.++ .+.+++.+++.-..
T Consensus       100 ~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~  138 (338)
T PRK12475        100 PVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQ  138 (338)
T ss_pred             EEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHH
Confidence                  0134567788899888877 46677777765443

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=97.16  E-value=0.00082  Score=56.85  Aligned_cols=37  Identities=27%  Similarity=0.312  Sum_probs=32.2

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR  111 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  111 (223)
                      ..|++++|.|||+|.+|..+++.|...|. ++.++|..
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            46999999999999999999999999998 57676643

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.15  E-value=0.0022  Score=56.30  Aligned_cols=89  Identities=18%  Similarity=0.183  Sum_probs=58.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCCC-------c-------ccccChhhhhcCCcEEEEeccC-
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSVL-------F-------PYCANVYDLAVNSDVLVVCCAL-  140 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~-------~-------~~~~~l~el~~~aDiv~~~~p~-  140 (223)
                      .+++|+|||.|.+|..+|-.+...|.  ++..+|+......+       .       ....+..+.+++||+|+++.-. 
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~   84 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP   84 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence            46799999999999999999988887  78999986654321       0       0111223558999999998632 


Q ss_pred             -Ch-hhh--------hccC--HHHHhcCCCCcEEEEcC
Q 035615          141 -TE-QTH--------HIIN--KDVMAELGKGGMIINVG  166 (223)
Q Consensus       141 -t~-~t~--------~li~--~~~l~~mk~ga~lIN~a  166 (223)
                       .+ .++        .++.  .+.+....+.+++|+++
T Consensus        85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         85 QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence             11 122        1111  11222234688999987

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=97.14  E-value=0.00014  Score=60.47  Aligned_cols=117  Identities=15%  Similarity=0.156  Sum_probs=75.6

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------------------Cc-------------cccc
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------------------LF-------------PYCA  122 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------------------~~-------------~~~~  122 (223)
                      ..-+.|+|||.|.||..+|+.....|+.|..+|++.+...                     ..             ....
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t   88 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST   88 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence            3456899999999999999999999999999998865321                     00             0124


Q ss_pred             ChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCC
Q 035615          123 NVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMII-NVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP  197 (223)
Q Consensus       123 ~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lI-N~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP  197 (223)
                      ++.++++.+|+|+=++-.+-+.+.-+-++.=...|+.++|. |+|.   +...++..+++.... .++|-.|.+-|
T Consensus        89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~sr-f~GlHFfNPvP  160 (298)
T KOG2304|consen   89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSR-FAGLHFFNPVP  160 (298)
T ss_pred             CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhh-hceeeccCCch
Confidence            56667777777765553332222111122223357777665 5554   445667777776554 47888887766

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.13  E-value=0.00058  Score=57.01  Aligned_cols=63  Identities=17%  Similarity=0.176  Sum_probs=48.2

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCC--------------cccccChhhh-hcCCcEEEEeccCCh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVL--------------FPYCANVYDL-AVNSDVLVVCCALTE  142 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~--------------~~~~~~l~el-~~~aDiv~~~~p~t~  142 (223)
                      |++.|+|+|+.|..+|+.|...|+.|+.+++++.....              .....-|.++ +.++|+++.++....
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~   78 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE   78 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH
Confidence            58999999999999999999999999999887654221              0112335555 788999999887543

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.12  E-value=0.0012  Score=52.13  Aligned_cols=69  Identities=19%  Similarity=0.222  Sum_probs=48.5

Q ss_pred             CCCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---C-ccc-ccCh-hhhhcCCcEEEEecc
Q 035615           71 YPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---L-FPY-CANV-YDLAVNSDVLVVCCA  139 (223)
Q Consensus        71 ~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---~-~~~-~~~l-~el~~~aDiv~~~~p  139 (223)
                      |+..-+|+|++|.|||.|.+|...++.|...|++|.++++......   . ... ...+ ++-+..+|+|+.++.
T Consensus         5 ~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~   79 (157)
T PRK06719          5 YPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATN   79 (157)
T ss_pred             cceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCC
Confidence            3456789999999999999999999999999999998875432210   0 000 1111 123677888887765

>PRK06223 malate dehydrogenase; Reviewed

Probab=97.11  E-value=0.0021  Score=55.91  Aligned_cols=108  Identities=17%  Similarity=0.189  Sum_probs=63.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCC-------------c--c--cccChhhhhcCCcEEEEecc--
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVL-------------F--P--YCANVYDLAVNSDVLVVCCA--  139 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~-------------~--~--~~~~l~el~~~aDiv~~~~p--  139 (223)
                      ++|+|||.|.+|..+|..+...|. +|..+|+..+...+             .  .  ...+. +.++.||+|+++..  
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~p   81 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGVP   81 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCCC
Confidence            689999999999999999987665 89999986643210             0  0  11344 45789999999863  


Q ss_pred             CChh---------hhhccCHHH---HhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCceEEE
Q 035615          140 LTEQ---------THHIINKDV---MAELGKGGMIINVGRGALIDEKEMLQF--LVQGDINGVG  189 (223)
Q Consensus       140 ~t~~---------t~~li~~~~---l~~mk~ga~lIN~arg~~vd~~al~~a--L~~~~i~~a~  189 (223)
                      ..+.         +..++ .+.   +...-+.+++|+++...=+-...+.+.  +...++.|.+
T Consensus        82 ~~~~~~r~~~~~~n~~i~-~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~g  144 (307)
T PRK06223         82 RKPGMSRDDLLGINAKIM-KDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMA  144 (307)
T ss_pred             CCcCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeC
Confidence            2111         11222 122   222345678888854433333344332  2224566554

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=97.10  E-value=0.0025  Score=55.51  Aligned_cols=107  Identities=16%  Similarity=0.156  Sum_probs=70.1

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-----C-Ccc-------c----ccChhhhhcCCcEEEEeccCCh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-----V-LFP-------Y----CANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~-~~~-------~----~~~l~el~~~aDiv~~~~p~t~  142 (223)
                      ++|+|+|.|.||.-+|-+|...|.+|..+.|..+..     . +..       .    .....+.....|+|++++-.. 
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~-   81 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY-   81 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence            579999999999999999999999999988864221     1 110       0    011112345789999998533 


Q ss_pred             hhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEE
Q 035615          143 QTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVG  189 (223)
Q Consensus       143 ~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~  189 (223)
                      ++...+ +.....+.+++.+|-+-.|= -.++.+.+.+...++.++.
T Consensus        82 ~~~~al-~~l~~~l~~~t~vv~lQNGv-~~~e~l~~~~~~~~v~~g~  126 (305)
T PRK05708         82 DAEPAV-ASLAHRLAPGAELLLLQNGL-GSQDAVAARVPHARCIFAS  126 (305)
T ss_pred             hHHHHH-HHHHhhCCCCCEEEEEeCCC-CCHHHHHHhCCCCcEEEEE
Confidence            333333 34556677888877765553 4566677777666665443

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=97.08  E-value=0.0034  Score=57.45  Aligned_cols=121  Identities=18%  Similarity=0.200  Sum_probs=78.4

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC---------CCccc--ccChhhhhcCCcEEEEec--cCC-h
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS---------VLFPY--CANVYDLAVNSDVLVVCC--ALT-E  142 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---------~~~~~--~~~l~el~~~aDiv~~~~--p~t-~  142 (223)
                      +.+++|.|+|+|.-|.++++.|+..|++|+++|..+...         ++...  -....+...++|+|+..=  |.+ |
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p   84 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHP   84 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCH
Confidence            449999999999999999999999999999999766551         11111  011125678899998862  222 2


Q ss_pred             h-------hhhccCH-HHHhcC--CCCcEEEEcCCCcccCHHHHHHHHHc--------CCceEEEeeCCCCCC
Q 035615          143 Q-------THHIINK-DVMAEL--GKGGMIINVGRGALIDEKEMLQFLVQ--------GDINGVGLDVFENDP  197 (223)
Q Consensus       143 ~-------t~~li~~-~~l~~m--k~ga~lIN~arg~~vd~~al~~aL~~--------~~i~~a~lDV~~~EP  197 (223)
                      .       -..++.+ +++-+.  +.--+-|.-+.|+.--..-+...|++        |.|...++|+.++++
T Consensus        85 ~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~  157 (448)
T COG0771          85 LVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAE  157 (448)
T ss_pred             HHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccC
Confidence            1       0112222 233332  22244555567887777777777766        677888899987744

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=97.08  E-value=0.0077  Score=55.33  Aligned_cols=109  Identities=13%  Similarity=0.219  Sum_probs=77.8

Q ss_pred             cCCCEEEEEec----ChHHHHHHHHHHhCCC--EEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           77 LGGMQVGIVRL----GNIGSEVLNRLQAFGF--IISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        77 l~g~~vgIiG~----G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      ++-++|.|||.    |++|..+.+.++..|+  +|+.+++......+...+.+++++-...|++++++|. +.+..++. 
T Consensus         5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~~~l~-   82 (447)
T TIGR02717         5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPA-KYVPQVVE-   82 (447)
T ss_pred             cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCH-HHHHHHHH-
Confidence            56789999998    8899999999999888  6888888776666777788999998889999999993 34444442 


Q ss_pred             HHHhcCCCCcEEE-EcCCCcc-----cCHHHHHHHHHcCCceEE
Q 035615          151 DVMAELGKGGMII-NVGRGAL-----IDEKEMLQFLVQGDINGV  188 (223)
Q Consensus       151 ~~l~~mk~ga~lI-N~arg~~-----vd~~al~~aL~~~~i~~a  188 (223)
                      +..+ .+-.+++| .-+-++.     ..++.|.+..+++.++-.
T Consensus        83 e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl  125 (447)
T TIGR02717        83 ECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL  125 (447)
T ss_pred             HHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence            3332 34344443 3222222     235778888888877633

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=97.06  E-value=0.0015  Score=58.44  Aligned_cols=59  Identities=17%  Similarity=0.238  Sum_probs=44.6

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-C---------cccccChhhhhcCCcEEEEe
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-L---------FPYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~---------~~~~~~l~el~~~aDiv~~~  137 (223)
                      .++|||||-|..|++++..++.+|++|+++|+.+.... .         +.....+.++++.+|+|...
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e   70 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYE   70 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeC
Confidence            37899999999999999999999999999988764321 1         01112366778899988643

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=97.06  E-value=0.0023  Score=56.30  Aligned_cols=112  Identities=14%  Similarity=0.147  Sum_probs=68.7

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------------Cc--c-c-ccChhhhhcCCcEEEEec
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------------LF--P-Y-CANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~~--~-~-~~~l~el~~~aDiv~~~~  138 (223)
                      +..++|+|||.|.+|..+|..+...|. +++.+|.+++...             +.  . . ..+. +.++.||+|+++.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta   82 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA   82 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence            456899999999999999999887785 8889998776321             00  0 1 2344 5679999999976


Q ss_pred             cCC--h--------------hhhhccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCceEEE
Q 035615          139 ALT--E--------------QTHHIIN--KDVMAELGKGGMIINVGRGALIDEKEMLQFLV--QGDINGVG  189 (223)
Q Consensus       139 p~t--~--------------~t~~li~--~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~--~~~i~~a~  189 (223)
                      -..  +              .+..++.  .+.+....|.+++||++.-.=+-...+.+...  ..++.|.+
T Consensus        83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            221  1              1111111  12233345678999998544333444444332  24566555

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=97.02  E-value=0.0035  Score=54.99  Aligned_cols=91  Identities=18%  Similarity=0.192  Sum_probs=64.4

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHh-------CCCEEEEEcCCCCCC--------------------C------CcccccC
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQA-------FGFIISYNSRRKRPS--------------------V------LFPYCAN  123 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~-------~G~~V~~~~~~~~~~--------------------~------~~~~~~~  123 (223)
                      -.-++|+|||.|+.|+++|+.+..       |..+|..|-+.....                    +      ......+
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d   98 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD   98 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence            446799999999999999998863       334565543222110                    0      1123578


Q ss_pred             hhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCc
Q 035615          124 VYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       124 l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~  169 (223)
                      +.+.+.+||+++..+|.+ .+..++ ++.....|+++..|....|=
T Consensus        99 l~ea~~dADilvf~vPhQ-f~~~ic-~~l~g~vk~~~~aISL~KG~  142 (372)
T KOG2711|consen   99 LVEAAKDADILVFVVPHQ-FIPRIC-EQLKGYVKPGATAISLIKGV  142 (372)
T ss_pred             HHHHhccCCEEEEeCChh-hHHHHH-HHHhcccCCCCeEEEeecce
Confidence            999999999999999954 344444 56777889999999988763

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.98  E-value=0.0043  Score=57.01  Aligned_cols=109  Identities=11%  Similarity=0.092  Sum_probs=70.5

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------Ccccc--cChhhhhcCCcEEEEeccCChh
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------LFPYC--ANVYDLAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~~~--~~l~el~~~aDiv~~~~p~t~~  143 (223)
                      -+.+++|+|+|+|..|.++|+.|+..|++|.++|+.+....          +....  ....+.+.++|+|+.. |.-+.
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~   89 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI   89 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence            36789999999999999999999999999999997653211          11111  1223556789999887 43322


Q ss_pred             hhh-----------ccCH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 035615          144 THH-----------IINK-DVM-AELGKGGMIINVGRGALIDEKEMLQFLVQGDI  185 (223)
Q Consensus       144 t~~-----------li~~-~~l-~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i  185 (223)
                      +..           ++++ +.+ +..+...+-|--+.|+.--.+-+...|+....
T Consensus        90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~  144 (458)
T PRK01710         90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGY  144 (458)
T ss_pred             CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence            211           2221 122 22233356666678888888888888876443

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.97  E-value=0.0029  Score=56.24  Aligned_cols=87  Identities=21%  Similarity=0.268  Sum_probs=55.3

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhC-CCEEE-EEcCCCCCCC----------Cc--cccc--ChhhhhcCCcEEEEeccCCh
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAF-GFIIS-YNSRRKRPSV----------LF--PYCA--NVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~----------~~--~~~~--~l~el~~~aDiv~~~~p~t~  142 (223)
                      ++|+|+|. |.+|+.+++.|... ++++. .+++......          ..  ..+.  +.++++.++|++++|+|.. 
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~-   79 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG-   79 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence            47999998 99999999999977 66776 4343321111          10  0122  4456667899999999944 


Q ss_pred             hhhhccCHHHHhc-CCCCcEEEEcCCCcccC
Q 035615          143 QTHHIINKDVMAE-LGKGGMIINVGRGALID  172 (223)
Q Consensus       143 ~t~~li~~~~l~~-mk~ga~lIN~arg~~vd  172 (223)
                      ....+     ... .+.|..+|+.|-.-=.+
T Consensus        80 ~s~~~-----~~~~~~~G~~VIDlS~~fR~~  105 (346)
T TIGR01850        80 VSAEL-----APELLAAGVKVIDLSADFRLK  105 (346)
T ss_pred             HHHHH-----HHHHHhCCCEEEeCChhhhcC
Confidence            22222     222 25688999888443333

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=96.96  E-value=0.0056  Score=52.40  Aligned_cols=60  Identities=20%  Similarity=0.314  Sum_probs=43.1

Q ss_pred             CEEEEEe-cChHHHHHHHHHHh-CCCEEE-EEcCCCCCC-------------CCcccccChhhhhcCCcEEEEecc
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQA-FGFIIS-YNSRRKRPS-------------VLFPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~-~G~~V~-~~~~~~~~~-------------~~~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      .+|+|+| +|+||+.+++.+.. -++++. ++|+.....             .+...+.+++++...+|+|+.+.|
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~   77 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT   77 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC
Confidence            4799999 69999999999875 588865 567432211             122335778888667999999885

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.95  E-value=0.0022  Score=58.44  Aligned_cols=64  Identities=16%  Similarity=0.141  Sum_probs=47.8

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------Cc-------ccccChhhh-hcCCcEEEEeccCChh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LF-------PYCANVYDL-AVNSDVLVVCCALTEQ  143 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~-------~~~~~l~el-~~~aDiv~~~~p~t~~  143 (223)
                      ++|.|+|+|.+|+.+++.|...|++|.+++++++...      +.       .....++++ +.++|.|+++++....
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~   78 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET   78 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence            5799999999999999999999999999988664321      11       112234555 7889999999885433

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.95  E-value=0.0033  Score=55.78  Aligned_cols=62  Identities=19%  Similarity=0.265  Sum_probs=42.5

Q ss_pred             CEEEEEecChHHHHHHHHHHh-CCCEEEE-EcCCCCCC------------------------CCcccccChhhhhcCCcE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQA-FGFIISY-NSRRKRPS------------------------VLFPYCANVYDLAVNSDV  133 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~~-~~~~~~~~------------------------~~~~~~~~l~el~~~aDi  133 (223)
                      .+|||+|+|+||+.+++.+.. -++++.+ .++.+...                        .+.....++++++..+|+
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            479999999999999998875 4778664 44333100                        011112457788888999


Q ss_pred             EEEeccCC
Q 035615          134 LVVCCALT  141 (223)
Q Consensus       134 v~~~~p~t  141 (223)
                      |+.|.|..
T Consensus        82 VIdaT~~~   89 (341)
T PRK04207         82 VVDATPGG   89 (341)
T ss_pred             EEECCCch
Confidence            99998743

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.93  E-value=0.0034  Score=52.98  Aligned_cols=80  Identities=21%  Similarity=0.218  Sum_probs=54.8

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------------C-----------------c--c--
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------------L-----------------F--P--  119 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~-----------------~--~--  119 (223)
                      ..|++++|.|+|.|.+|..+|+.|...|. ++..+|+..-...             +                 .  .  
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~   99 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI   99 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence            45899999999999999999999999998 4777665432210             0                 0  0  


Q ss_pred             --c--ccChhhhhcCCcEEEEeccCChhhhhccCHHHHhc
Q 035615          120 --Y--CANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE  155 (223)
Q Consensus       120 --~--~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~  155 (223)
                        .  ..++.++++++|+|+.++ .+.+++..+++...+.
T Consensus       100 ~~~i~~~~~~~~~~~~DlVvd~~-D~~~~r~~ln~~~~~~  138 (240)
T TIGR02355       100 NAKLDDAELAALIAEHDIVVDCT-DNVEVRNQLNRQCFAA  138 (240)
T ss_pred             eccCCHHHHHHHhhcCCEEEEcC-CCHHHHHHHHHHHHHc
Confidence              0  022456778888887766 4566777776655443

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.92  E-value=0.0075  Score=52.23  Aligned_cols=107  Identities=14%  Similarity=0.187  Sum_probs=67.2

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCC---CCC----Cc-------ccccCh------hhhhcCCcE
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKR---PSV----LF-------PYCANV------YDLAVNSDV  133 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~---~~~----~~-------~~~~~l------~el~~~aDi  133 (223)
                      .+++++++.|+|.|..+++++..+...|+ +|.+++|+..   +.+    ..       ....++      .+.+.++|+
T Consensus       120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDi  199 (288)
T PRK12749        120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADI  199 (288)
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCE
Confidence            45789999999999999999999988898 6999999853   111    00       011222      234567899


Q ss_pred             EEEeccCCh--hhhh-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 035615          134 LVVCCALTE--QTHH-IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDI  185 (223)
Q Consensus       134 v~~~~p~t~--~t~~-li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i  185 (223)
                      |+.++|..-  .... ++..  ...++++.++.++--.+.  +..|+++-++..+
T Consensus       200 vINaTp~Gm~~~~~~~~~~~--~~~l~~~~~v~D~vY~P~--~T~ll~~A~~~G~  250 (288)
T PRK12749        200 LTNGTKVGMKPLENESLVND--ISLLHPGLLVTECVYNPH--MTKLLQQAQQAGC  250 (288)
T ss_pred             EEECCCCCCCCCCCCCCCCc--HHHCCCCCEEEEecCCCc--cCHHHHHHHHCCC
Confidence            999998531  1111 1111  234677888888765443  3345555444433

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.91  E-value=0.013  Score=50.63  Aligned_cols=109  Identities=15%  Similarity=0.184  Sum_probs=76.7

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCC--CCCCCCcccccChhhhhcCCcEEEEeccCChhh----------hh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRR--KRPSVLFPYCANVYDLAVNSDVLVVCCALTEQT----------HH  146 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~--~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t----------~~  146 (223)
                      |++++|||-=.--..+++.|...|++|..+...  .....++....+.++.++++|+|++=+|.+...          +-
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~   80 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKV   80 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCc
Confidence            689999999888889999999999998766533  222234445556666799999999999966542          11


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615          147 IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE  194 (223)
Q Consensus       147 li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~  194 (223)
                      .++++.++.++++++ +-++    ++..++.++.++..+.  ..|.++
T Consensus        81 ~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~--v~~~~~  121 (287)
T TIGR02853        81 VLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK--LIELFE  121 (287)
T ss_pred             cccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe--EEEEEe
Confidence            246889999998664 4444    4445566677777776  554443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.90  E-value=0.0026  Score=49.00  Aligned_cols=85  Identities=14%  Similarity=0.287  Sum_probs=50.7

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcE
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGM  161 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~  161 (223)
                      +-|+|.|.+++++++.++.+|++|.++|+.++.             +..++-+. +.+.    ..+.  +.+ .+.+++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~-------------~~~~~~~~-~~~~----~~~~--~~~-~~~~~t~   59 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER-------------FPEADEVI-CIPP----DDIL--EDL-EIDPNTA   59 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC--------------TTSSEEE-CSHH----HHHH--HHC--S-TT-E
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc-------------cCCCCccE-ecCh----HHHH--hcc-CCCCCeE
Confidence            468999999999999999999999999877431             12344332 2221    1111  111 3566666


Q ss_pred             EEEcCCCcccCHHHHHHHHHcCCceEEE
Q 035615          162 IINVGRGALIDEKEMLQFLVQGDINGVG  189 (223)
Q Consensus       162 lIN~arg~~vd~~al~~aL~~~~i~~a~  189 (223)
                      +| +.++.-.|.+.|.++|+. ...+.+
T Consensus        60 Vv-~th~h~~D~~~L~~~l~~-~~~YiG   85 (136)
T PF13478_consen   60 VV-MTHDHELDAEALEAALAS-PARYIG   85 (136)
T ss_dssp             EE---S-CCCHHHHHHHHTTS-S-SEEE
T ss_pred             EE-EcCCchhHHHHHHHHHcC-CCCEEE
Confidence            66 888888999988888887 444343

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.90  E-value=0.0014  Score=48.35  Aligned_cols=80  Identities=21%  Similarity=0.155  Sum_probs=51.4

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccc-------cccChhhh-hcCCcEEEEeccCChhhhhcc
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFP-------YCANVYDL-AVNSDVLVVCCALTEQTHHII  148 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~-------~~~~l~el-~~~aDiv~~~~p~t~~t~~li  148 (223)
                      |.|+|+|.+|+.+++.|+..+.+|++++++++...     +..       ....++++ +.++|.++++.+....+..+ 
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~-   79 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLI-   79 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHH-
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHH-
Confidence            57999999999999999997779999988764321     111       11223332 67899999988744333332 


Q ss_pred             CHHHHhcCCCCcEEE
Q 035615          149 NKDVMAELGKGGMII  163 (223)
Q Consensus       149 ~~~~l~~mk~ga~lI  163 (223)
                       ...++.+-+...++
T Consensus        80 -~~~~r~~~~~~~ii   93 (116)
T PF02254_consen   80 -ALLARELNPDIRII   93 (116)
T ss_dssp             -HHHHHHHTTTSEEE
T ss_pred             -HHHHHHHCCCCeEE
Confidence             34555555555554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=96.87  E-value=0.011  Score=51.50  Aligned_cols=97  Identities=21%  Similarity=0.201  Sum_probs=69.6

Q ss_pred             ccCCCEEEEEec---ChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------C--cccccChhhhhcCCcEEEEeccC
Q 035615           76 KLGGMQVGIVRL---GNIGSEVLNRLQAFGFIISYNSRRKRPSV----------L--FPYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        76 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      .++|++|+++|-   +++.++.+..+..+|++|.+..|..-...          +  +....++++.++.+|+|....-.
T Consensus       147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~  226 (301)
T TIGR00670       147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQ  226 (301)
T ss_pred             CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCcc
Confidence            378999999998   49999999999999999998876543111          1  12357899999999999774210


Q ss_pred             -----C-hh-----hhhccCHHHHhcCCCCcEEEEcC-CCcccC
Q 035615          141 -----T-EQ-----THHIINKDVMAELGKGGMIINVG-RGALID  172 (223)
Q Consensus       141 -----t-~~-----t~~li~~~~l~~mk~ga~lIN~a-rg~~vd  172 (223)
                           . ++     ...-++++.++.+|++++|.-+. ||.=|+
T Consensus       227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclPRg~Ev~  270 (301)
T TIGR00670       227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLPRVDEID  270 (301)
T ss_pred             ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCCCCcccC
Confidence                 0 11     12346788899999999888655 554333

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.86  E-value=0.0016  Score=53.87  Aligned_cols=88  Identities=18%  Similarity=0.198  Sum_probs=60.2

Q ss_pred             CCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------C---cccccChhhhhcCCcEEEEeccCC
Q 035615           72 PLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------L---FPYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        72 ~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~---~~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      +...+|.|++|.|||-|..|..=++.+...|.+|+++++...+..       .   ....-+.++ +..+++|+.+++..
T Consensus         5 Pl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~   83 (210)
T COG1648           5 PLFLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDE   83 (210)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCH
Confidence            455679999999999999999999999999999999988772211       1   111122333 44489999888643


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEc
Q 035615          142 EQTHHIINKDVMAELGKGGMIINV  165 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~  165 (223)
                      +     +|++.+...++-.+++|+
T Consensus        84 ~-----ln~~i~~~a~~~~i~vNv  102 (210)
T COG1648          84 E-----LNERIAKAARERRILVNV  102 (210)
T ss_pred             H-----HHHHHHHHHHHhCCceec
Confidence            3     344444455554566665

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=96.86  E-value=0.0019  Score=58.95  Aligned_cols=61  Identities=8%  Similarity=0.043  Sum_probs=44.8

Q ss_pred             CEEEEEecChHHHHHHH---HH---HhCCCEEEEEcCCCCCCC-----------------CcccccChhhhhcCCcEEEE
Q 035615           80 MQVGIVRLGNIGSEVLN---RL---QAFGFIISYNSRRKRPSV-----------------LFPYCANVYDLAVNSDVLVV  136 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~---~l---~~~G~~V~~~~~~~~~~~-----------------~~~~~~~l~el~~~aDiv~~  136 (223)
                      .+|+|||.|.+|...+-   .+   ...|.+|..||++++...                 ......++.+.++.||+|+.
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~   80 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN   80 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence            47999999999998554   22   334678999998865321                 11124577899999999999


Q ss_pred             eccC
Q 035615          137 CCAL  140 (223)
Q Consensus       137 ~~p~  140 (223)
                      ++|.
T Consensus        81 ai~~   84 (423)
T cd05297          81 TIQV   84 (423)
T ss_pred             eeEe
Confidence            9983

linked to 3D####ucture

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.85  E-value=0.0027  Score=57.11  Aligned_cols=96  Identities=17%  Similarity=0.230  Sum_probs=62.7

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHhC-CCEEEEEcCCCCCCCC------------cccccChhh-hhcCCcEEEEeccCC
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQAF-GFIISYNSRRKRPSVL------------FPYCANVYD-LAVNSDVLVVCCALT  141 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~------------~~~~~~l~e-l~~~aDiv~~~~p~t  141 (223)
                      -..++|+|+|. |.+|+.+.+.|... ++++..+.+.....+.            .....+++. .++++|+|++++|..
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~  115 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG  115 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence            35569999996 99999999999877 7787766543322110            011222222 257899999999843


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQ  178 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~  178 (223)
                       ..     .+....|+.|..+|+.|..-..+.++.++
T Consensus       116 -~s-----~~i~~~~~~g~~VIDlSs~fRl~~~~~y~  146 (381)
T PLN02968        116 -TT-----QEIIKALPKDLKIVDLSADFRLRDIAEYE  146 (381)
T ss_pred             -HH-----HHHHHHHhCCCEEEEcCchhccCCcccch
Confidence             22     34444456789999999766666554443

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.85  E-value=0.0038  Score=54.70  Aligned_cols=108  Identities=16%  Similarity=0.198  Sum_probs=64.8

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCCC----------c----c-c-ccChhhhhcCCcEEEEeccC-
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSVL----------F----P-Y-CANVYDLAVNSDVLVVCCAL-  140 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~----------~----~-~-~~~l~el~~~aDiv~~~~p~-  140 (223)
                      .+|+|||.|.+|..+|-.+...|.  ++..+|...+...+          +    . . ..+.+ .++.||+|+++.-. 
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG~~   82 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAGAR   82 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCCCC
Confidence            589999999999999998876665  68889887653220          0    1 1 13444 48999999997632 


Q ss_pred             -Ch-hhh-hcc--C-------HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCceEE
Q 035615          141 -TE-QTH-HII--N-------KDVMAELGKGGMIINVGRGALIDEKEMLQF--LVQGDINGV  188 (223)
Q Consensus       141 -t~-~t~-~li--~-------~~~l~~mk~ga~lIN~arg~~vd~~al~~a--L~~~~i~~a  188 (223)
                       .+ .++ .++  |       .+.+....+.+++|+++.-.=+-...+.+.  +...++.|.
T Consensus        83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~  144 (312)
T cd05293          83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGS  144 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEec
Confidence             21 223 111  1       123444577899999983222222233333  334555555

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.83  E-value=0.0029  Score=54.90  Aligned_cols=57  Identities=16%  Similarity=0.138  Sum_probs=41.7

Q ss_pred             EEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------------Cc--c--cccChhhhhcCCcEEEEecc
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------------LF--P--YCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~~--~--~~~~l~el~~~aDiv~~~~p  139 (223)
                      |+|||.|.||..+|..+...|. +|+.+|++++...             ..  .  ...+. +.++.||+|+++..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g   75 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence            6899999999999999886665 9999998765321             00  0  11344 45899999999873

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK06270 homoserine dehydrogenase; Provisional

Probab=96.82  E-value=0.0087  Score=53.04  Aligned_cols=107  Identities=14%  Similarity=0.215  Sum_probs=64.1

Q ss_pred             CEEEEEecChHHHHHHHHHHhC----------CCEEE-EEcCCCC-------CC--------C-C-cc------cccChh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF----------GFIIS-YNSRRKR-------PS--------V-L-FP------YCANVY  125 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~----------G~~V~-~~~~~~~-------~~--------~-~-~~------~~~~l~  125 (223)
                      .+|+|+|+|.||+.+++.+...          +++|. +.|++..       ..        . + ..      ...+++
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL   82 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence            4799999999999999998754          56755 4454321       00        0 0 00      123778


Q ss_pred             hhhc--CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCce
Q 035615          126 DLAV--NSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGAL-IDEKEMLQFLVQGDIN  186 (223)
Q Consensus       126 el~~--~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~-vd~~al~~aL~~~~i~  186 (223)
                      +++.  +.|+|+.++|....+...--.-....|+.|.-+|-...+.+ ...+.|.++.++....
T Consensus        83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~  146 (341)
T PRK06270         83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR  146 (341)
T ss_pred             HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence            8874  68999999985443211111122444566766666544443 2456777777776654

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=96.80  E-value=0.016  Score=50.64  Aligned_cols=92  Identities=15%  Similarity=0.176  Sum_probs=68.4

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----------C--cccccChhhhhcCCcEEEEec---
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV-----------L--FPYCANVYDLAVNSDVLVVCC---  138 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----------~--~~~~~~l~el~~~aDiv~~~~---  138 (223)
                      .+.|++|+++|= +++.++.+..+..+|++|.+..|..-...           +  +....++++.++.+|+|..-.   
T Consensus       149 ~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~  228 (304)
T PRK00779        149 SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVS  228 (304)
T ss_pred             CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccc
Confidence            378999999996 88999999999999999998876542221           1  223578999999999998752   


Q ss_pred             -cCC---hh-----hhhccCHHHHhcCCCCcEEEEcCC
Q 035615          139 -ALT---EQ-----THHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       139 -p~t---~~-----t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                       ...   .+     ...-++++.++.+|++++|.-+.-
T Consensus       229 ~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHplP  266 (304)
T PRK00779        229 MGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCLP  266 (304)
T ss_pred             cccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCCC
Confidence             110   11     234568888988999998887763

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.79  E-value=0.027  Score=47.82  Aligned_cols=154  Identities=14%  Similarity=0.124  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhCCC-----------EEE
Q 035615           38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGF-----------IIS  106 (223)
Q Consensus        38 vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-----------~V~  106 (223)
                      +|=-+++-+++..|-                    .+..|++.+|.|+|.|..|-.+|+.+...+.           +++
T Consensus         4 TaaV~lAgllnAlk~--------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~   63 (254)
T cd00762           4 TASVAVAGLLAALKV--------------------TKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIW   63 (254)
T ss_pred             hHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEE
Confidence            344567777777763                    3456889999999999999999999987665           577


Q ss_pred             EEcCCCC----C--CC----C---c----ccccChhhhhc--CCcEEEEeccCChhhhhccCHHHHhcCC---CCcEEEE
Q 035615          107 YNSRRKR----P--SV----L---F----PYCANVYDLAV--NSDVLVVCCALTEQTHHIINKDVMAELG---KGGMIIN  164 (223)
Q Consensus       107 ~~~~~~~----~--~~----~---~----~~~~~l~el~~--~aDiv~~~~p~t~~t~~li~~~~l~~mk---~ga~lIN  164 (223)
                      .+|+..-    .  ..    .   +    ....+|.|+++  +.|+++=.-    ..-++|+++.++.|.   +..++.=
T Consensus        64 ~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFa  139 (254)
T cd00762          64 XVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFA  139 (254)
T ss_pred             EECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEE
Confidence            7776531    0  00    0   1    12358999999  999886532    235789999999998   8899998


Q ss_pred             cCCCccc---CHHHHHHHHHcCCceEEEeeCCCCCCCCCC--CCCCCCceEEccCCC
Q 035615          165 VGRGALI---DEKEMLQFLVQGDINGVGLDVFENDPNVPK--EPLRLDNIVLLPCQN  216 (223)
Q Consensus       165 ~arg~~v---d~~al~~aL~~~~i~~a~lDV~~~EP~~~~--~l~~~~nv~~TPH~a  216 (223)
                      .|+-..-   ..++.+++=+-+.|.+-+.-.+.++- ...  ..-+..|+++-|=++
T Consensus       140 LSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~-~g~~~~~~Q~NN~~iFPGig  195 (254)
T cd00762         140 LSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL-NGGTYKPGQGNNLYIFPGVA  195 (254)
T ss_pred             CCCcCCccccCHHHHHhhcCCCEEEEECCCCCCccc-CCceeecccccceeeccchh
Confidence            8877663   33444433322234322221111111 001  233667888888654

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PLN02527 aspartate carbamoyltransferase

Probab=96.77  E-value=0.016  Score=50.72  Aligned_cols=96  Identities=21%  Similarity=0.217  Sum_probs=68.3

Q ss_pred             ccCCCEEEEEecC---hHHHHHHHHHHhC-CCEEEEEcCCCCCCC----------C--cccccChhhhhcCCcEEEEecc
Q 035615           76 KLGGMQVGIVRLG---NIGSEVLNRLQAF-GFIISYNSRRKRPSV----------L--FPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        76 ~l~g~~vgIiG~G---~iG~~~a~~l~~~-G~~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      .+.|+||+++|-+   ++.++.+..+..+ |++|.+..|..-...          +  +....++++.++.+|+|....-
T Consensus       148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~  227 (306)
T PLN02527        148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRI  227 (306)
T ss_pred             CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCc
Confidence            3789999999965   6889999988887 999988876542111          1  1235789999999999988431


Q ss_pred             CCh------h------hhhccCHHHHhcCCCCcEEEEcC-CCccc
Q 035615          140 LTE------Q------THHIINKDVMAELGKGGMIINVG-RGALI  171 (223)
Q Consensus       140 ~t~------~------t~~li~~~~l~~mk~ga~lIN~a-rg~~v  171 (223)
                      ..+      .      ....++++.++..|++++|..+. ||.=|
T Consensus       228 q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclPRg~Ei  272 (306)
T PLN02527        228 QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLPRLDEI  272 (306)
T ss_pred             chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCCCcccc
Confidence            100      1      12557888898899999888665 55433

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=96.76  E-value=0.0044  Score=54.95  Aligned_cols=89  Identities=19%  Similarity=0.232  Sum_probs=55.3

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhC-CCEEE-EEcCCCCCCC-----C-cc-----cccChhh-hhcCCcEEEEeccCChhh
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAF-GFIIS-YNSRRKRPSV-----L-FP-----YCANVYD-LAVNSDVLVVCCALTEQT  144 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~-----~-~~-----~~~~l~e-l~~~aDiv~~~~p~t~~t  144 (223)
                      ++|+|+|. |.+|+.+++.+... ++++. +.++......     . ..     .+.++++ ...++|+|++|+|... .
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~-~   81 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGV-S   81 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHH-H
Confidence            68999996 99999999999876 67765 4554322110     0 11     1223333 4578999999999542 2


Q ss_pred             hhccCHHHHhcCCCCcEEEEcCCCcccCH
Q 035615          145 HHIINKDVMAELGKGGMIINVGRGALIDE  173 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~arg~~vd~  173 (223)
                      ..+. .   ..++.|..+||.|-.--.+.
T Consensus        82 ~~~v-~---~a~~aG~~VID~S~~fR~~~  106 (343)
T PRK00436         82 MDLA-P---QLLEAGVKVIDLSADFRLKD  106 (343)
T ss_pred             HHHH-H---HHHhCCCEEEECCcccCCCC
Confidence            2221 1   12356899999985444433

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=96.74  E-value=0.0031  Score=55.12  Aligned_cols=60  Identities=25%  Similarity=0.216  Sum_probs=45.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCC--CEEEEEcCCCCCCCC-------cc--------cccChhhhhcCCcEEEEeccC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFG--FIISYNSRRKRPSVL-------FP--------YCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~-------~~--------~~~~l~el~~~aDiv~~~~p~  140 (223)
                      ++|+|||.|.+|..+|..+...|  .+|..+|++.....+       ..        ...+. +.++.||+|+++.+.
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~   77 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGA   77 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCC
Confidence            47999999999999999999888  479999987643321       10        01233 558999999999875

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.73  E-value=0.0026  Score=56.99  Aligned_cols=80  Identities=14%  Similarity=0.155  Sum_probs=55.9

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC------------------------------Cc--c--
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV------------------------------LF--P--  119 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------------------------------~~--~--  119 (223)
                      ..|++++|.|+|+|.+|..+++.|...|+ ++..+|...-...                              ..  .  
T Consensus        37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~  116 (370)
T PRK05600         37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL  116 (370)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence            56899999999999999999999999998 6777765421100                              00  0  


Q ss_pred             ----cccChhhhhcCCcEEEEeccCChhhhhccCHHHHhc
Q 035615          120 ----YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE  155 (223)
Q Consensus       120 ----~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~  155 (223)
                          ...+.+++++++|+|+.|+ .+.+++.++++...+.
T Consensus       117 ~~~i~~~~~~~~~~~~DlVid~~-Dn~~~r~~in~~~~~~  155 (370)
T PRK05600        117 RERLTAENAVELLNGVDLVLDGS-DSFATKFLVADAAEIT  155 (370)
T ss_pred             eeecCHHHHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHc
Confidence                0124556788899887665 4667787777654443

>PRK08223 hypothetical protein; Validated

Probab=96.71  E-value=0.0071  Score=52.29  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=32.1

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR  111 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  111 (223)
                      ..|++++|.|||+|.+|..+++.|...|. ++..+|..
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            46999999999999999999999999998 46666644

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.71  E-value=0.0081  Score=51.91  Aligned_cols=105  Identities=20%  Similarity=0.210  Sum_probs=71.3

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCCc----------ccccChhhh--hcCCcEEEEeccCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLF----------PYCANVYDL--AVNSDVLVVCCALT  141 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~----------~~~~~l~el--~~~aDiv~~~~p~t  141 (223)
                      .+..|+++.|+|.|..+++++..|+..|+ +|.+++|+.++.+..          .......++  ..++|+|+.++|..
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G  201 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG  201 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence            45678999999999999999999999996 699999987653210          011222222  22699999999865


Q ss_pred             hhhh---hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          142 EQTH---HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       142 ~~t~---~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      -.-.   ..++   ...++++.++.++--.+. +..-|..|=+.|
T Consensus       202 m~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G  242 (283)
T COG0169         202 MAGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQG  242 (283)
T ss_pred             CCCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcC
Confidence            3322   1333   456788999999876665 444444444445

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.69  E-value=0.011  Score=51.93  Aligned_cols=90  Identities=8%  Similarity=0.072  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHhCCCEEEEEcCCCCCCC-----------------------C-------------cccccC--hhhhhcCC
Q 035615           90 IGSEVLNRLQAFGFIISYNSRRKRPSV-----------------------L-------------FPYCAN--VYDLAVNS  131 (223)
Q Consensus        90 iG~~~a~~l~~~G~~V~~~~~~~~~~~-----------------------~-------------~~~~~~--l~el~~~a  131 (223)
                      ||..+|..+...|++|..+|++++...                       +             .....+  ..+.+++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            688999999999999999999874200                       0             001112  55788999


Q ss_pred             cEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 035615          132 DVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLV  181 (223)
Q Consensus       132 Div~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~  181 (223)
                      |+|+-++|...+.+..+-.+..+.++++++|  ++.-+.+....|.+.++
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~  128 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVA  128 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcC
Confidence            9999999999888887767788889999988  45556666777777764

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.69  E-value=0.059  Score=46.44  Aligned_cols=152  Identities=15%  Similarity=0.158  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhC----CC-------EEE
Q 035615           38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAF----GF-------IIS  106 (223)
Q Consensus        38 vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~----G~-------~V~  106 (223)
                      +|=-+++-+++..|-                    .+..|.+.+|.|+|.|.-|-.+|+.+...    |.       +++
T Consensus         4 Ta~V~lAgllnAlk~--------------------~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~   63 (279)
T cd05312           4 TAAVALAGLLAALRI--------------------TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIW   63 (279)
T ss_pred             HHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEE
Confidence            445567778877774                    34568899999999999999999999876    77       688


Q ss_pred             EEcCCCC----C--CC----Cc----c--cccChhhhhc--CCcEEEEeccCChhhhhccCHHHHhcCC---CCcEEEEc
Q 035615          107 YNSRRKR----P--SV----LF----P--YCANVYDLAV--NSDVLVVCCALTEQTHHIINKDVMAELG---KGGMIINV  165 (223)
Q Consensus       107 ~~~~~~~----~--~~----~~----~--~~~~l~el~~--~aDiv~~~~p~t~~t~~li~~~~l~~mk---~ga~lIN~  165 (223)
                      .+|+..-    .  ..    .+    .  ...+|.|+++  +.|+++=+-    ..-++|+++.++.|.   +..++.=.
T Consensus        64 ~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaL  139 (279)
T cd05312          64 LVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFAL  139 (279)
T ss_pred             EEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence            8886531    1  10    00    1  2357999999  889886532    124789999999998   78999999


Q ss_pred             CCCcccCHHHHHHHHH--cCC-ceEEEeeCCCCCCCC-C---CCCCCCCceEEccCCC
Q 035615          166 GRGALIDEKEMLQFLV--QGD-INGVGLDVFENDPNV-P---KEPLRLDNIVLLPCQN  216 (223)
Q Consensus       166 arg~~vd~~al~~aL~--~~~-i~~a~lDV~~~EP~~-~---~~l~~~~nv~~TPH~a  216 (223)
                      |+-..--|-.-.++.+  +|+ |.+.+.-   -.|.. +   ...=+..|+++-|=++
T Consensus       140 SNPt~~~E~~pe~a~~~t~G~ai~ATGsP---f~pv~~~Gr~~~p~Q~NN~~iFPGig  194 (279)
T cd05312         140 SNPTSKAECTAEDAYKWTDGRALFASGSP---FPPVEYNGKTYVPGQGNNAYIFPGIG  194 (279)
T ss_pred             CCcCCccccCHHHHHHhhcCCEEEEeCCC---CCCeeeCCeEecCCCcceeeeccchh
Confidence            8876533322223333  354 4432221   11111 0   1233556888888654

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.67  E-value=0.0014  Score=50.72  Aligned_cols=87  Identities=20%  Similarity=0.293  Sum_probs=55.8

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCC--CEEEEEcCCCCCCCC---------------cccccChhhhhcCCcEEEEeccC-
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFG--FIISYNSRRKRPSVL---------------FPYCANVYDLAVNSDVLVVCCAL-  140 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~---------------~~~~~~l~el~~~aDiv~~~~p~-  140 (223)
                      ++|+|||. |++|+.+|-.|...+  -++..+|+......+               ........+.+++||+|+++.-. 
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~   80 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP   80 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence            58999999 999999999987555  479999987543210               11123566778999999998732 


Q ss_pred             -Ch-hhh-hcc--CH-------HHHhcCCCCcEEEEcC
Q 035615          141 -TE-QTH-HII--NK-------DVMAELGKGGMIINVG  166 (223)
Q Consensus       141 -t~-~t~-~li--~~-------~~l~~mk~ga~lIN~a  166 (223)
                       .+ +++ .++  |.       +.+.+..|.++++.++
T Consensus        81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt  118 (141)
T PF00056_consen   81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT  118 (141)
T ss_dssp             SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred             ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence             22 111 111  11       2233445778888874

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.66  E-value=0.0035  Score=55.91  Aligned_cols=37  Identities=24%  Similarity=0.280  Sum_probs=32.4

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR  111 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  111 (223)
                      ..|++++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus        24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D   61 (355)
T PRK05597         24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD   61 (355)
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999999998 47777654

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=96.66  E-value=0.013  Score=51.97  Aligned_cols=105  Identities=15%  Similarity=0.088  Sum_probs=67.6

Q ss_pred             CCEEEEEecChHHHHHHHHHHhC--CCEEE-EEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCC-hhhhhcc
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAF--GFIIS-YNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALT-EQTHHII  148 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~--G~~V~-~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t-~~t~~li  148 (223)
                      -.+|||||. .+|+..++.++..  ++++. ++|+..++..      +...+.+.+|++.+.|++++++|.+ +...|. 
T Consensus         3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~-   80 (343)
T TIGR01761         3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS-   80 (343)
T ss_pred             CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH-
Confidence            368999999 6899999888765  47765 5787765432      3335789999999999999999742 222221 


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          149 NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       149 ~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                       +-..+.|+.|.-++.=---..-+.++|+++.++.++.
T Consensus        81 -e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~  117 (343)
T TIGR01761        81 -ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRR  117 (343)
T ss_pred             -HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCE
Confidence             2223334555433332222245667777777776665

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.66  E-value=0.0029  Score=46.48  Aligned_cols=75  Identities=13%  Similarity=0.141  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHhCCCEEEEEcCCCCCCC--------CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcE
Q 035615           90 IGSEVLNRLQAFGFIISYNSRRKRPSV--------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGM  161 (223)
Q Consensus        90 iG~~~a~~l~~~G~~V~~~~~~~~~~~--------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~  161 (223)
                      -+..+++.|+..|++|.+|||.-....        +.....++++.++.+|+|+++++.. +-+.+--++....|+++.+
T Consensus        18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~~~~~~~~~~~~~   96 (106)
T PF03720_consen   18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDWEEIAKLMRKPPV   96 (106)
T ss_dssp             HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGHHHHHHHSCSSEE
T ss_pred             HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCHHHHHHhcCCCCE
Confidence            456889999999999999998765432        2333568899999999999999754 3333323456677888899


Q ss_pred             EEEc
Q 035615          162 IINV  165 (223)
Q Consensus       162 lIN~  165 (223)
                      ||++
T Consensus        97 iiD~  100 (106)
T PF03720_consen   97 IIDG  100 (106)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            9987

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.65  E-value=0.0058  Score=49.97  Aligned_cols=37  Identities=19%  Similarity=0.314  Sum_probs=32.8

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRR  111 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~  111 (223)
                      ..|++++|.|+|+|.+|..+++.|...|+. +..+|..
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            569999999999999999999999999995 7777654

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.65  E-value=0.0042  Score=55.07  Aligned_cols=37  Identities=24%  Similarity=0.275  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR  111 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  111 (223)
                      ..|..++|.|||.|.+|..+|+.|...|. ++..+|..
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999999999 78888765

>PLN02342 ornithine carbamoyltransferase

Probab=96.64  E-value=0.025  Score=50.33  Aligned_cols=92  Identities=15%  Similarity=0.106  Sum_probs=68.0

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------CcccccChhhhhcCCcEEEEec---
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------LFPYCANVYDLAVNSDVLVVCC---  138 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------~~~~~~~l~el~~~aDiv~~~~---  138 (223)
                      .+.|+||+++|= .++-++++..+..+|++|.+..|..-...             .+....++++.++.+|+|..-.   
T Consensus       191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s  270 (348)
T PLN02342        191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWAS  270 (348)
T ss_pred             CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccc
Confidence            478999999995 56888888889999999988876542211             1224578899999999998763   


Q ss_pred             -cCChh--------hhhccCHHHHhcCCCCcEEEEcCC
Q 035615          139 -ALTEQ--------THHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       139 -p~t~~--------t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                       -..+.        ....++++.++.+|++++|.-+.-
T Consensus       271 ~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpLP  308 (348)
T PLN02342        271 MGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCLP  308 (348)
T ss_pred             cccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCCC
Confidence             11111        125678999999999999988763

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=96.64  E-value=0.021  Score=50.63  Aligned_cols=92  Identities=12%  Similarity=0.065  Sum_probs=68.3

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEec
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~~  138 (223)
                      .+.|++|+++|= .++.++++..+..+|++|.++.|..-...              +  +....++++.++.+|+|..-.
T Consensus       151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~  230 (338)
T PRK02255        151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV  230 (338)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence            488999999995 78889999999999999998876532111              1  223578999999999998833


Q ss_pred             -----cCC---hh------hhhccCHHHHhcCCCCcEEEEcCC
Q 035615          139 -----ALT---EQ------THHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       139 -----p~t---~~------t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                           ...   ++      ....++++.++.+|++++|.-+.-
T Consensus       231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP  273 (338)
T PRK02255        231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLP  273 (338)
T ss_pred             cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCCC
Confidence                 110   01      125678999999999999987763

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.63  E-value=0.003  Score=60.13  Aligned_cols=87  Identities=22%  Similarity=0.237  Sum_probs=59.4

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccc-c---ccC---hhhh-hcCCcEEEEeccCChhhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFP-Y---CAN---VYDL-AVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~-~---~~~---l~el-~~~aDiv~~~~p~t~~t~  145 (223)
                      ..++.|+|+|++|+.+++.|...|.++++.|.+++..+     +.. .   ..+   ++++ ++++|.++++.+..+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~  479 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM  479 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence            45799999999999999999999999999998876432     111 0   112   2222 678999999998766555


Q ss_pred             hccCHHHHhcCCCCcEEEEcCC
Q 035615          146 HIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      .++  ...+++.|...+|--+|
T Consensus       480 ~i~--~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        480 KIV--ELCQQHFPHLHILARAR  499 (601)
T ss_pred             HHH--HHHHHHCCCCeEEEEeC
Confidence            543  33445556655554433

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=96.60  E-value=0.006  Score=43.90  Aligned_cols=69  Identities=19%  Similarity=0.195  Sum_probs=44.5

Q ss_pred             CCEEEEEecChHHHHHHHHH-HhCCCEE-EEEcCCCCCCC----CcccccChhhhhcC--CcEEEEeccCChhhhhcc
Q 035615           79 GMQVGIVRLGNIGSEVLNRL-QAFGFII-SYNSRRKRPSV----LFPYCANVYDLAVN--SDVLVVCCALTEQTHHII  148 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l-~~~G~~V-~~~~~~~~~~~----~~~~~~~l~el~~~--aDiv~~~~p~t~~t~~li  148 (223)
                      ..++.|+|.|+.|++++... ...|+++ .++|.++....    +...+.+++++.+.  .|+-++++|.. .....+
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~-~a~~~~   79 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAE-AAQEVA   79 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HH-HHHHHH
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHH-HHHHHH
Confidence            45799999999999997544 3557663 45665554322    33334577776665  99999999833 334443

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.60  E-value=0.004  Score=47.48  Aligned_cols=33  Identities=30%  Similarity=0.389  Sum_probs=28.5

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR  111 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  111 (223)
                      .++|.|+|+|.+|..+++.|...|+ ++..+|..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            6899999999999999999999999 57777754

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK07411 hypothetical protein; Validated

Probab=96.59  E-value=0.004  Score=56.20  Aligned_cols=83  Identities=22%  Similarity=0.116  Sum_probs=57.1

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------------C-----------------c--c--
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------------L-----------------F--P--  119 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~-----------------~--~--  119 (223)
                      ..|+..+|.|||+|.+|..+++.|...|. ++..+|...-...             +                 .  .  
T Consensus        34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~  113 (390)
T PRK07411         34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY  113 (390)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            46999999999999999999999999998 4667664421100             0                 0  0  


Q ss_pred             ----cccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCC
Q 035615          120 ----YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGK  158 (223)
Q Consensus       120 ----~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~  158 (223)
                          ...+..+++.++|+|+.|+ .+.+++.++++...+.-+|
T Consensus       114 ~~~~~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~~~p  155 (390)
T PRK07411        114 ETRLSSENALDILAPYDVVVDGT-DNFPTRYLVNDACVLLNKP  155 (390)
T ss_pred             ecccCHHhHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCC
Confidence                0123456788899887765 4567788887665554444

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.59  E-value=0.017  Score=52.44  Aligned_cols=87  Identities=15%  Similarity=0.209  Sum_probs=62.2

Q ss_pred             ccCCCEEEEEec----------ChHHHHHHHHHHhCCCEEEEEcCCCCCCC--CcccccChhhhhcCCcEEEEeccCChh
Q 035615           76 KLGGMQVGIVRL----------GNIGSEVLNRLQAFGFIISYNSRRKRPSV--LFPYCANVYDLAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        76 ~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~el~~~aDiv~~~~p~t~~  143 (223)
                      .+.|++|+|+|+          ..-...+++.|...|++|.+|||......  ......++++.++.+|.|+++.+..+ 
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~~~-  388 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDHDE-  388 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCCHH-
Confidence            478999999997          45678899999999999999998754322  11124688899999999999987543 


Q ss_pred             hhhccCHHHHh-cCCCCcEEEEc
Q 035615          144 THHIINKDVMA-ELGKGGMIINV  165 (223)
Q Consensus       144 t~~li~~~~l~-~mk~ga~lIN~  165 (223)
                      -+. ++-+.++ .|+ ..++++.
T Consensus       389 ~~~-~~~~~~~~~~~-~~~v~D~  409 (411)
T TIGR03026       389 FKD-LDLEKIKDLMK-GKVVVDT  409 (411)
T ss_pred             Hhc-cCHHHHHHhcC-CCEEEeC
Confidence            222 3444443 455 4577774

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=96.58  E-value=0.0091  Score=51.80  Aligned_cols=90  Identities=12%  Similarity=0.092  Sum_probs=63.1

Q ss_pred             cCCCEEEEEe---cChHHHHHHHHHHhCCCEEEEEcCCCCCC-----C---C---c-ccccChhhhhcCCcEEEEec---
Q 035615           77 LGGMQVGIVR---LGNIGSEVLNRLQAFGFIISYNSRRKRPS-----V---L---F-PYCANVYDLAVNSDVLVVCC---  138 (223)
Q Consensus        77 l~g~~vgIiG---~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~---~---~-~~~~~l~el~~~aDiv~~~~---  138 (223)
                      +.|++|+|+|   +|+..++.++.|+.||.+|..+.|..-..     .   .   . ......+|.++++|++.+.-   
T Consensus       156 ~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~lRvQ~  235 (316)
T COG0540         156 LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYMLRVQK  235 (316)
T ss_pred             cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEeehhhH
Confidence            8999999999   89999999999999999999998764332     1   1   1 22445566999999997652   


Q ss_pred             -----cCChh---hhhccCHHHHhc-CCCCcEEEEcC
Q 035615          139 -----ALTEQ---THHIINKDVMAE-LGKGGMIINVG  166 (223)
Q Consensus       139 -----p~t~~---t~~li~~~~l~~-mk~ga~lIN~a  166 (223)
                           |.-++   -.+.+....++. +|+++++.--+
T Consensus       236 ER~~~~~~~s~~~~y~~~~~~~~~~~~k~~~ivmHP~  272 (316)
T COG0540         236 ERFNDPEEYSKVKEYYKLYGLTLERLAKPDAIVMHPL  272 (316)
T ss_pred             hhcCCccchHHHHHHHHHHHHHHHhhcCCCcEEECCC
Confidence                 11111   112233445556 88888887655

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.58  E-value=0.012  Score=48.71  Aligned_cols=37  Identities=27%  Similarity=0.296  Sum_probs=32.9

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRR  111 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~  111 (223)
                      ..|+.++|.|||+|.+|..+++.|...|.. +..+|..
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            468999999999999999999999999985 7777765

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.58  E-value=0.015  Score=52.97  Aligned_cols=108  Identities=13%  Similarity=0.131  Sum_probs=69.1

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------Ccc--cccChhhhhcCCcEEEEeccCChh
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------LFP--YCANVYDLAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~--~~~~l~el~~~aDiv~~~~p~t~~  143 (223)
                      ++.+|++.|+|.|.+|..+|+.|...|++|.++|+......          +..  .....++....+|+|+.+.-..+.
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~   81 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD   81 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence            36799999999999999999999999999999998652210          111  112233556789999887533222


Q ss_pred             hh--------h--ccCH-HH-HhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          144 TH--------H--IINK-DV-MAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       144 t~--------~--li~~-~~-l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      ..        +  ++.. +. ....+...+-|--+.|+.--.+-|...|+..
T Consensus        82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~  133 (450)
T PRK14106         82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNA  133 (450)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHc
Confidence            11        1  1111 11 2222323455566678888888888888753

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.57  E-value=0.039  Score=46.33  Aligned_cols=121  Identities=20%  Similarity=0.157  Sum_probs=72.2

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCC-----------C--C-----------------c--c--
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPS-----------V--L-----------------F--P--  119 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----------~--~-----------------~--~--  119 (223)
                      ..|++++|.|+|+|.+|..+++.|...|. ++..+|...-..           .  +                 .  .  
T Consensus         7 ~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~   86 (231)
T cd00755           7 EKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAV   86 (231)
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEe
Confidence            35889999999999999999999999998 577776442110           0  0                 0  0  


Q ss_pred             --c--ccChhhhh-cCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccC-----------------HHHHH
Q 035615          120 --Y--CANVYDLA-VNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALID-----------------EKEML  177 (223)
Q Consensus       120 --~--~~~l~el~-~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd-----------------~~al~  177 (223)
                        .  ..+.++++ .+.|+|+.|+- +...+..+++...+.  .-.++...+-|.-.|                 ...+.
T Consensus        87 ~~~i~~~~~~~l~~~~~D~VvdaiD-~~~~k~~L~~~c~~~--~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~~~R  163 (231)
T cd00755          87 EEFLTPDNSEDLLGGDPDFVVDAID-SIRAKVALIAYCRKR--KIPVISSMGAGGKLDPTRIRVADISKTSGDPLARKVR  163 (231)
T ss_pred             eeecCHhHHHHHhcCCCCEEEEcCC-CHHHHHHHHHHHHHh--CCCEEEEeCCcCCCCCCeEEEccEeccccCcHHHHHH
Confidence              0  12345555 36899988874 334444344333221  123444455554333                 23456


Q ss_pred             HHHHcCCceEEEeeCCCCCCC
Q 035615          178 QFLVQGDINGVGLDVFENDPN  198 (223)
Q Consensus       178 ~aL~~~~i~~a~lDV~~~EP~  198 (223)
                      +.|++.++..-.-=||..|++
T Consensus       164 ~~Lrk~~~~~~~~~v~S~E~~  184 (231)
T cd00755         164 KRLRKRGIFFGVPVVYSTEPP  184 (231)
T ss_pred             HHHHHcCCCCCeEEEeCCCCC
Confidence            677777775223346888864

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.57  E-value=0.005  Score=57.75  Aligned_cols=91  Identities=12%  Similarity=0.119  Sum_probs=58.5

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc--------ccccChhhhh-cCCcEEEEeccCCh--hh
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF--------PYCANVYDLA-VNSDVLVVCCALTE--QT  144 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~--------~~~~~l~el~-~~aDiv~~~~p~t~--~t  144 (223)
                      ++.++++.|+|.|.+|++++..|...|++|++++|+.++....        ....++.+.. ..+|+|+.+.|..-  ..
T Consensus       376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~  455 (529)
T PLN02520        376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNV  455 (529)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCC
Confidence            5779999999999999999999999999999999875432210        1112222222 35688887776431  11


Q ss_pred             hh-ccCHHHHhcCCCCcEEEEcCCCc
Q 035615          145 HH-IINKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       145 ~~-li~~~~l~~mk~ga~lIN~arg~  169 (223)
                      .. .++.   ..+++..+++++.-.+
T Consensus       456 ~~~pl~~---~~l~~~~~v~D~vY~P  478 (529)
T PLN02520        456 DETPISK---HALKHYSLVFDAVYTP  478 (529)
T ss_pred             CCCcccH---hhCCCCCEEEEeccCC
Confidence            11 1222   3456677777776544

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.55  E-value=0.0034  Score=49.74  Aligned_cols=61  Identities=11%  Similarity=0.068  Sum_probs=47.6

Q ss_pred             EEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC---C-------cccccChhhhhcCCcEEEEeccCCh
Q 035615           82 VGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV---L-------FPYCANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        82 vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---~-------~~~~~~l~el~~~aDiv~~~~p~t~  142 (223)
                      |.|+| .|.+|+.+++.|...|++|.+..|++.+..   +       .....++.+.++.+|.|+.+++.+.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~   72 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP   72 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence            67899 499999999999999999999988876432   1       1122455677899999999997543

...

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.52  E-value=0.0049  Score=56.76  Aligned_cols=90  Identities=14%  Similarity=0.054  Sum_probs=58.5

Q ss_pred             CCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------C-cc--cccChhhhhcCCcEEEEeccCCh
Q 035615           72 PLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------L-FP--YCANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        72 ~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~-~~--~~~~l~el~~~aDiv~~~~p~t~  142 (223)
                      +..-+|+|++|.|||-|.++..=++.|..+|++|.++++...+..      + ..  ...-.++.++.+++|+.++...+
T Consensus         5 P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~   84 (457)
T PRK10637          5 PIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA   84 (457)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH
Confidence            455689999999999999999988999999999999987643221      0 00  00112345678888888765332


Q ss_pred             hhhhccCHHHHhcCCCCcEEEEcC
Q 035615          143 QTHHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       143 ~t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                           +|++.....+...+++|++
T Consensus        85 -----~n~~i~~~a~~~~~lvN~~  103 (457)
T PRK10637         85 -----VNQRVSEAAEARRIFCNVV  103 (457)
T ss_pred             -----HhHHHHHHHHHcCcEEEEC
Confidence                 3344444444444555543

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=96.50  E-value=0.022  Score=50.45  Aligned_cols=92  Identities=9%  Similarity=0.005  Sum_probs=66.3

Q ss_pred             ccCCCEEEEEecC--hHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEe
Q 035615           76 KLGGMQVGIVRLG--NIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        76 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~  137 (223)
                      .+.|++|++||=+  ++.++++..+..+|++|.+..|..-...              +  +....++++.++++|+|..-
T Consensus       153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~  232 (334)
T PRK01713        153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD  232 (334)
T ss_pred             CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4789999999975  6788889999999999998876532111              1  22357899999999999874


Q ss_pred             c----cC---Chh------hhhccCHHHHhcC-CCCcEEEEcCC
Q 035615          138 C----AL---TEQ------THHIINKDVMAEL-GKGGMIINVGR  167 (223)
Q Consensus       138 ~----p~---t~~------t~~li~~~~l~~m-k~ga~lIN~ar  167 (223)
                      .    ..   ..+      ....++++.++.. |++++|.-+.-
T Consensus       233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~lP  276 (334)
T PRK01713        233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCLP  276 (334)
T ss_pred             ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCCC
Confidence            2    10   001      1234788888886 78999988764

>PRK06349 homoserine dehydrogenase; Provisional

Probab=96.49  E-value=0.019  Score=52.44  Aligned_cols=103  Identities=17%  Similarity=0.282  Sum_probs=62.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhC----------CCEEE-EEcCCCCCCC-----CcccccChhhhhc--CCcEEEEeccCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF----------GFIIS-YNSRRKRPSV-----LFPYCANVYDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~----------G~~V~-~~~~~~~~~~-----~~~~~~~l~el~~--~aDiv~~~~p~t  141 (223)
                      .+|||+|+|.||+.+++.+...          ++++. +++++.....     ....+.++++++.  +.|+|+.+++..
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~   83 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI   83 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence            5799999999999999887432          45544 5566554322     1234568899985  469999887643


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCce
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVGRGALI-DEKEMLQFLVQGDIN  186 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~arg~~v-d~~al~~aL~~~~i~  186 (223)
                      .....+    ..+.|+.|.-+|...-..+. .-+.|.++.++.+..
T Consensus        84 ~~~~~~----~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~  125 (426)
T PRK06349         84 EPAREL----ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD  125 (426)
T ss_pred             hHHHHH----HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence            221211    22445566656544333222 236677777666654

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.49  E-value=0.004  Score=58.67  Aligned_cols=83  Identities=17%  Similarity=0.061  Sum_probs=55.6

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc----ccC---hhhh-hcCCcEEEEeccCChhhhh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY----CAN---VYDL-AVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~----~~~---l~el-~~~aDiv~~~~p~t~~t~~  146 (223)
                      -++-|+|+|++|+.+++.|+..|.+|+++|.+++..+     +...    ..+   ++++ ++++|.++++++...++..
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~  497 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE  497 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence            5689999999999999999999999999998765432     1110    112   2222 5689999999987666555


Q ss_pred             ccCHHHHhcCCCCcEEEE
Q 035615          147 IINKDVMAELGKGGMIIN  164 (223)
Q Consensus       147 li~~~~l~~mk~ga~lIN  164 (223)
                      ++..  ...+.+...+|-
T Consensus       498 iv~~--~~~~~~~~~iia  513 (558)
T PRK10669        498 IVAS--AREKRPDIEIIA  513 (558)
T ss_pred             HHHH--HHHHCCCCeEEE
Confidence            4422  233345555553

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=96.48  E-value=0.012  Score=56.10  Aligned_cols=65  Identities=22%  Similarity=0.422  Sum_probs=48.8

Q ss_pred             CCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhCCCE-EEEEc
Q 035615           31 KQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNS  109 (223)
Q Consensus        31 ~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~  109 (223)
                      +-.++...||-++-+=|-+.|             |..-+++.. ..|++.+|.|+|.|.+|..+|+.|.+.|+. +..+|
T Consensus       304 ~~mdP~~la~~avdlnlkLmk-------------WRllP~l~~-ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD  369 (664)
T TIGR01381       304 KEFDPKRLAERSVDLNLKLMK-------------WRLHPDLQL-ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVD  369 (664)
T ss_pred             hhcCHHHHHHHHHHHHHHHHh-------------hhcCChhhH-HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEc
Confidence            455677788888888777666             332222211 568999999999999999999999999994 66655

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.47  E-value=0.0046  Score=59.10  Aligned_cols=84  Identities=15%  Similarity=0.126  Sum_probs=56.4

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccc-c---ccC---hhh-hhcCCcEEEEeccCChhhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFP-Y---CAN---VYD-LAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~-~---~~~---l~e-l~~~aDiv~~~~p~t~~t~  145 (223)
                      ..+|-|+|+|++|+.+++.|.+.|.++++.|.+++..+     +.. .   ..+   +++ =++++|.++++++..+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~  479 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL  479 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence            46899999999999999999999999999988776432     211 1   122   222 2568999999997665554


Q ss_pred             hccCHHHHhcCCCCcEEEE
Q 035615          146 HIINKDVMAELGKGGMIIN  164 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN  164 (223)
                      .+.  ...+.+.|...++-
T Consensus       480 ~i~--~~ar~~~p~~~iia  496 (621)
T PRK03562        480 QLV--ELVKEHFPHLQIIA  496 (621)
T ss_pred             HHH--HHHHHhCCCCeEEE
Confidence            442  23444445544443

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=96.47  E-value=0.0079  Score=57.03  Aligned_cols=65  Identities=17%  Similarity=0.195  Sum_probs=48.9

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-Cc------ccccC---hhhhhcCCcEEEEecc
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-LF------PYCAN---VYDLAVNSDVLVVCCA  139 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~~------~~~~~---l~el~~~aDiv~~~~p  139 (223)
                      .+...|+|||||-|..|+.+++.++.+|++|+.+++.+.... .+      ..+.+   +.++.+++|+|+....
T Consensus        18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e   92 (577)
T PLN02948         18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE   92 (577)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence            347899999999999999999999999999999988764221 00      01233   5566788999877643

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=96.46  E-value=0.031  Score=48.84  Aligned_cols=91  Identities=12%  Similarity=0.089  Sum_probs=68.0

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEec-
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVCC-  138 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~~-  138 (223)
                      +.|.+|+++|= +++-++.+..+..+|++|.+..|..-...              +  +....++++.++.+|+|..-. 
T Consensus       146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w  225 (304)
T TIGR00658       146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW  225 (304)
T ss_pred             CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence            78999999995 78999999999999999988876542211              1  223578899999999998743 


Q ss_pred             -cCC-----h-----hhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          139 -ALT-----E-----QTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       139 -p~t-----~-----~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                       ...     +     .....++++.++.+|++++|.-+.-
T Consensus       226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHplP  265 (304)
T TIGR00658       226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCLP  265 (304)
T ss_pred             ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCCC
Confidence             101     1     1234678999999999999887763

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.44  E-value=0.0079  Score=55.21  Aligned_cols=109  Identities=15%  Similarity=0.077  Sum_probs=68.5

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEec--cCC-h----h
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCC--ALT-E----Q  143 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~--p~t-~----~  143 (223)
                      +++|++|.|+|+|..|.++|+.|+..|++|.++|.......     +......-.+-+..+|+|+..-  |.+ +    .
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~   85 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV   85 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence            47789999999999999999999999999999996543211     1111111112356789887532  211 1    1


Q ss_pred             h---hh----ccCH-HHHhc-C-----CCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 035615          144 T---HH----IINK-DVMAE-L-----GKGGMIINVGRGALIDEKEMLQFLVQGD  184 (223)
Q Consensus       144 t---~~----li~~-~~l~~-m-----k~ga~lIN~arg~~vd~~al~~aL~~~~  184 (223)
                      .   +.    ++.+ +.+.. +     +...+-|.-+.|+.--..-|...|++..
T Consensus        86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g  140 (460)
T PRK01390         86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAG  140 (460)
T ss_pred             HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence            1   11    1332 22222 2     3345667777899888888888887643

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=96.43  E-value=0.016  Score=51.27  Aligned_cols=92  Identities=13%  Similarity=0.119  Sum_probs=66.6

Q ss_pred             ccCCCEEEEEecC--hHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEe
Q 035615           76 KLGGMQVGIVRLG--NIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        76 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~  137 (223)
                      .+.|+||++||-+  ++.++++..+..+|++|.+..|..-...              +  +....++++.++.+|+|..-
T Consensus       152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~  231 (331)
T PRK02102        152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD  231 (331)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            3789999999986  7899999999999999988876542211              1  12347889999999999885


Q ss_pred             ccC-------Chh-----hhhccCHHHHh-cCCCCcEEEEcCC
Q 035615          138 CAL-------TEQ-----THHIINKDVMA-ELGKGGMIINVGR  167 (223)
Q Consensus       138 ~p~-------t~~-----t~~li~~~~l~-~mk~ga~lIN~ar  167 (223)
                      +=.       .++     ...-++++.++ .+|++++|.-+.-
T Consensus       232 ~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~lP  274 (331)
T PRK02102        232 VWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCLP  274 (331)
T ss_pred             CcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCCC
Confidence            310       011     13456788888 4789999887754

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.42  E-value=0.0035  Score=56.19  Aligned_cols=59  Identities=19%  Similarity=0.311  Sum_probs=42.6

Q ss_pred             EEEEecChHHHHHHHHHHhCC-C-EEEEEcCCCCCCC---------C-------cccccChhhhhcCCcEEEEeccC
Q 035615           82 VGIVRLGNIGSEVLNRLQAFG-F-IISYNSRRKRPSV---------L-------FPYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G-~-~V~~~~~~~~~~~---------~-------~~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      |+|+|.|.+|+.+++.|...+ + +|++.+|+.++..         .       .....++.++++++|+|+.|+|.
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp   77 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP   77 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence            789999999999999998765 4 7999998875421         1       11123477899999999999974

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.42  E-value=0.022  Score=52.78  Aligned_cols=98  Identities=9%  Similarity=0.192  Sum_probs=68.1

Q ss_pred             ccCCCEEEEEec----------ChHHHHHHHHHHhCCCEEEEEcCCCCCCCC---------------------------c
Q 035615           76 KLGGMQVGIVRL----------GNIGSEVLNRLQAFGFIISYNSRRKRPSVL---------------------------F  118 (223)
Q Consensus        76 ~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~---------------------------~  118 (223)
                      .+.|++|+|+|+          ..-...+++.|...|.+|.+||+.-.....                           .
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV  400 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence            488999999997          557789999999999999999987432110                           0


Q ss_pred             ccccChhhhhcCCcEEEEeccCChhhhhccCH-HHHhcCCCCcEEEEcCCCcccCHHHHH
Q 035615          119 PYCANVYDLAVNSDVLVVCCALTEQTHHIINK-DVMAELGKGGMIINVGRGALIDEKEML  177 (223)
Q Consensus       119 ~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~-~~l~~mk~ga~lIN~arg~~vd~~al~  177 (223)
                      ....++++.++.+|+|+++....+ -+. ++- +..+.|++..+++|. |+- .|.+.+.
T Consensus       401 ~~~~~~~~a~~~aD~vvi~t~~~e-f~~-l~~~~~~~~m~~~~~viD~-rn~-l~~~~~~  456 (473)
T PLN02353        401 SVVWDAYEATKGAHGICILTEWDE-FKT-LDYQKIYDNMQKPAFVFDG-RNV-LDHEKLR  456 (473)
T ss_pred             eeeCCHHHHhcCCCEEEECCCChH-hcc-cCHHHHHHhccCCCEEEEC-CCC-CCHHHHH
Confidence            113355788999999999987543 333 333 335567766688884 544 4665553

>PRK11579 putative oxidoreductase; Provisional

Probab=96.42  E-value=0.0058  Score=54.00  Aligned_cols=62  Identities=15%  Similarity=0.181  Sum_probs=44.7

Q ss_pred             CEEEEEecChHHHH-HHHHHHhC-CCEEE-EEcCCCCCCC----CcccccChhhhhc--CCcEEEEeccCC
Q 035615           80 MQVGIVRLGNIGSE-VLNRLQAF-GFIIS-YNSRRKRPSV----LFPYCANVYDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~~----~~~~~~~l~el~~--~aDiv~~~~p~t  141 (223)
                      .+|||||+|.||+. .+..++.. ++++. ++|++++...    ....+.+++++++  +.|+|++++|..
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~   75 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPND   75 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcH
Confidence            48999999999985 45655543 78865 5777654321    2234689999996  579999999854

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.41  E-value=0.0051  Score=55.22  Aligned_cols=37  Identities=22%  Similarity=0.228  Sum_probs=33.0

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR  111 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  111 (223)
                      ..|++++|.|+|.|.+|..+++.|...|. ++..+|+.
T Consensus       131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45899999999999999999999999999 57777765

>PRK08328 hypothetical protein; Provisional

Probab=96.41  E-value=0.011  Score=49.43  Aligned_cols=37  Identities=32%  Similarity=0.361  Sum_probs=32.5

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR  111 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  111 (223)
                      ..|++++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            56899999999999999999999999998 47777654

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.40  E-value=0.012  Score=53.70  Aligned_cols=109  Identities=14%  Similarity=0.086  Sum_probs=68.9

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------Ccccc--cChhhhhcC-CcEEEEec--c-C
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------LFPYC--ANVYDLAVN-SDVLVVCC--A-L  140 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~--~~l~el~~~-aDiv~~~~--p-~  140 (223)
                      ++.|+++.|+|.|.+|.++|+.|...|++|.+.|+......         +....  ....+++.. .|+|+..-  | .
T Consensus         2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~   81 (447)
T PRK02472          2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT   81 (447)
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence            36799999999999999999999999999999987543211         11111  122344444 89887754  2 2


Q ss_pred             Chhh-------hhccCHH-HHhcC-CCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 035615          141 TEQT-------HHIINKD-VMAEL-GKGGMIINVGRGALIDEKEMLQFLVQGD  184 (223)
Q Consensus       141 t~~t-------~~li~~~-~l~~m-k~ga~lIN~arg~~vd~~al~~aL~~~~  184 (223)
                      .+..       ..++.+. ++..+ +...+-|--+.|+.--..-+...|+...
T Consensus        82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g  134 (447)
T PRK02472         82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGG  134 (447)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCC
Confidence            2211       1223332 22233 3345666677888888888888887633

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.40  E-value=0.0087  Score=51.73  Aligned_cols=104  Identities=14%  Similarity=0.087  Sum_probs=65.8

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCCc------------ccccC---hhhhhcCCcEEEEecc
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLF------------PYCAN---VYDLAVNSDVLVVCCA  139 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~------------~~~~~---l~el~~~aDiv~~~~p  139 (223)
                      ++.++++.|+|.|..|++++-.|...|+ ++.+++|+.++.+..            ....+   +++.+..+|+|+.++|
T Consensus       124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp  203 (283)
T PRK14027        124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_pred             CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence            4678999999999999999999999998 588999986543210            01111   2345677999999998


Q ss_pred             CChhh-hh-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          140 LTEQT-HH-IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       140 ~t~~t-~~-li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      ..-.. .. .++.   ..++++.++.++--.+ ..+.-|.+|-+.|
T Consensus       204 ~Gm~~~~~~~~~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G  245 (283)
T PRK14027        204 MGMPAHPGTAFDV---SCLTKDHWVGDVVYMP-IETELLKAARALG  245 (283)
T ss_pred             CCCCCCCCCCCCH---HHcCCCcEEEEcccCC-CCCHHHHHHHHCC
Confidence            54211 11 1322   3356677777776544 3333333433333

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.37  E-value=0.045  Score=47.95  Aligned_cols=92  Identities=12%  Similarity=0.132  Sum_probs=67.9

Q ss_pred             ccCCCEEEEEec---ChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccC-----C
Q 035615           76 KLGGMQVGIVRL---GNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCAL-----T  141 (223)
Q Consensus        76 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~-----t  141 (223)
                      .+.|.+|+++|=   +++.++++..+..+|+ +|.+..|..-...     ......++++.++.+|+|...-=.     .
T Consensus       154 ~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~~~~~~er~~~  233 (310)
T PRK13814        154 HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVTLRLQKERHDN  233 (310)
T ss_pred             CcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEECccccccccc
Confidence            378999999996   6999999999999999 8988876542211     123357899999999999773210     0


Q ss_pred             hh----h--hhccCHHHHhcCCCCcEEEEcCC
Q 035615          142 EQ----T--HHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       142 ~~----t--~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      +.    .  ...++++.++.+|++++|.-+.-
T Consensus       234 ~~~~~~~~~~y~v~~~~l~~a~~~~i~mHcLP  265 (310)
T PRK13814        234 SVDIDAFRGSFRLTPEKLYSAKPDAIVMHPGP  265 (310)
T ss_pred             hhHHHHhCCCcccCHHHHHhcCCCCEEECCCC
Confidence            11    1  24568888888899999888763

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=96.34  E-value=0.0081  Score=53.18  Aligned_cols=56  Identities=18%  Similarity=0.250  Sum_probs=42.5

Q ss_pred             EEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-C-c-----ccccC---hhhhhcCCcEEEE
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-L-F-----PYCAN---VYDLAVNSDVLVV  136 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~-~-----~~~~~---l~el~~~aDiv~~  136 (223)
                      ||||||-|..|+.+++.++.+|++|++++.++.... . +     ..+.+   +.++++.||+|..
T Consensus         1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~   66 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF   66 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence            589999999999999999999999999988754321 0 0     01233   6677888998754

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.33  E-value=0.006  Score=56.60  Aligned_cols=107  Identities=15%  Similarity=0.145  Sum_probs=67.2

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccccc--cChhhhhcCCcEEEEeccCC---hhhh-
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYC--ANVYDLAVNSDVLVVCCALT---EQTH-  145 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~--~~l~el~~~aDiv~~~~p~t---~~t~-  145 (223)
                      +.|++|.|+|+|.+|.+.++.|+..|++|+++|+.+....     +....  ....+.++.+|+|+.+-...   |... 
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~   89 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA   89 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence            4689999999999999999999999999999996533211     22111  12335567899888764222   2111 


Q ss_pred             ------hccCHHHHh-cC--------CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          146 ------HIINKDVMA-EL--------GKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       146 ------~li~~~~l~-~m--------k~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                            .++++-.+. .+        +...+=|--+-|+.--..-+...|+..
T Consensus        90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~  142 (488)
T PRK03369         90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAA  142 (488)
T ss_pred             HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence                  123222221 11        112455666678888777788888763

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=96.32  E-value=0.019  Score=50.76  Aligned_cols=92  Identities=13%  Similarity=0.125  Sum_probs=66.7

Q ss_pred             ccCCCEEEEEecC--hHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEe
Q 035615           76 KLGGMQVGIVRLG--NIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        76 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~  137 (223)
                      .+.|+||++||=+  ++.++.+..+..+|++|.+..|..-...              +  +....++++.++.+|+|..-
T Consensus       152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~  231 (332)
T PRK04284        152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD  231 (332)
T ss_pred             CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence            3789999999964  8899999999999999988876532110              1  22357899999999999875


Q ss_pred             cc----C----Chh-----hhhccCHHHHhcCC-CCcEEEEcCC
Q 035615          138 CA----L----TEQ-----THHIINKDVMAELG-KGGMIINVGR  167 (223)
Q Consensus       138 ~p----~----t~~-----t~~li~~~~l~~mk-~ga~lIN~ar  167 (223)
                      .=    .    .++     ....++++.++.+| ++++|.-+.-
T Consensus       232 ~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHplP  275 (332)
T PRK04284        232 VWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCLP  275 (332)
T ss_pred             CcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCCC
Confidence            20    0    001     13456888999886 5898887764

>PRK07877 hypothetical protein; Provisional

Probab=96.32  E-value=0.016  Score=56.14  Aligned_cols=81  Identities=20%  Similarity=0.249  Sum_probs=58.0

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCC----------C--C----------------c------
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPS----------V--L----------------F------  118 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~----------~--~----------------~------  118 (223)
                      ..|++++|+|+|+| +|..+|..|...|.  ++..+|...-..          .  +                .      
T Consensus       103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~  181 (722)
T PRK07877        103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF  181 (722)
T ss_pred             HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence            45999999999999 99999999998884  666665332100          0  0                0      


Q ss_pred             ---ccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCC
Q 035615          119 ---PYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG  157 (223)
Q Consensus       119 ---~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk  157 (223)
                         ....+++++++.+|+|+-|+- +-+++.++++...+.-+
T Consensus       182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~i  222 (722)
T PRK07877        182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARRI  222 (722)
T ss_pred             eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence               011467788999999988875 66888898877766533

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=96.31  E-value=0.033  Score=48.69  Aligned_cols=104  Identities=20%  Similarity=0.212  Sum_probs=68.6

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC------------CC----cccccChhhhhcCCcEEEEeccCChh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS------------VL----FPYCANVYDLAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------~~----~~~~~~l~el~~~aDiv~~~~p~t~~  143 (223)
                      ++|.|+|.|.||.-++-+|...|..|..+.|.+...            .+    ......-.+.+..+|+|++++-.. +
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-q   79 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-Q   79 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-c
Confidence            589999999999999999999997788887776410            01    011223345567899999998633 4


Q ss_pred             hhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          144 THHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      +...+ +.....+++.+.++-+-.|- =.++.+.+.....++.
T Consensus        80 ~~~al-~~l~~~~~~~t~vl~lqNG~-g~~e~l~~~~~~~~il  120 (307)
T COG1893          80 LEEAL-PSLAPLLGPNTVVLFLQNGL-GHEEELRKILPKETVL  120 (307)
T ss_pred             HHHHH-HHhhhcCCCCcEEEEEeCCC-cHHHHHHHhCCcceEE
Confidence            44444 45666778887766554443 3344666666665444

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.30  E-value=0.012  Score=54.65  Aligned_cols=110  Identities=14%  Similarity=0.096  Sum_probs=68.5

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------Ccccc--cChhhhhcCCcEEEEe--ccCC--
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------LFPYC--ANVYDLAVNSDVLVVC--CALT--  141 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~--~~l~el~~~aDiv~~~--~p~t--  141 (223)
                      +.+++|.|+|+|..|.++|+.|+..|++|.++|.......         +....  ....+.+..+|+|+..  +|.+  
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~   84 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA   84 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence            5688999999999999999999999999999996543210         11111  1123456689999886  3332  


Q ss_pred             ---hhh-------hhccCH-HHHh-cC--------CCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          142 ---EQT-------HHIINK-DVMA-EL--------GKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       142 ---~~t-------~~li~~-~~l~-~m--------k~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                         |..       ..++.+ +.+. .+        ++..+-|--+-|+.--..-|...|++....
T Consensus        85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~  149 (498)
T PRK02006         85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK  149 (498)
T ss_pred             ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence               211       122222 2221 12        223455666678887777788888764443

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=96.28  E-value=0.023  Score=48.32  Aligned_cols=86  Identities=12%  Similarity=0.159  Sum_probs=67.9

Q ss_pred             HHHHHHHHHhCCCEEEEEcCCCCCCC----------CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCc
Q 035615           91 GSEVLNRLQAFGFIISYNSRRKRPSV----------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGG  160 (223)
Q Consensus        91 G~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga  160 (223)
                      |..+|-.+...|+.|+..+++..-..          +....++-.+..+.+.+.++-.|+.+.|.++. ++.+..++.|+
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA  111 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA  111 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence            56778788888999999988765432          33345566788999999999999998888875 67899999999


Q ss_pred             EEEEcCCCcccCHHHHHHHH
Q 035615          161 MIINVGRGALIDEKEMLQFL  180 (223)
Q Consensus       161 ~lIN~arg~~vd~~al~~aL  180 (223)
                      ++.|+..-+.+   .|+..|
T Consensus       112 VicnTCT~sp~---vLy~~L  128 (340)
T COG4007         112 VICNTCTVSPV---VLYYSL  128 (340)
T ss_pred             EecccccCchh---HHHHHh
Confidence            99999886654   455555

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=96.26  E-value=0.014  Score=52.76  Aligned_cols=79  Identities=18%  Similarity=0.129  Sum_probs=54.0

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------------C-----------------cc----
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------------L-----------------FP----  119 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~-----------------~~----  119 (223)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|...-...             +                 ..    
T Consensus        38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~  117 (392)
T PRK07878         38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH  117 (392)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence            45899999999999999999999999998 4777764421100             0                 00    


Q ss_pred             ----cccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615          120 ----YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA  154 (223)
Q Consensus       120 ----~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~  154 (223)
                          ...+..++++.+|+|+.|. .+..++.++|+-..+
T Consensus       118 ~~~i~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~  155 (392)
T PRK07878        118 EFRLDPSNAVELFSQYDLILDGT-DNFATRYLVNDAAVL  155 (392)
T ss_pred             eccCChhHHHHHHhcCCEEEECC-CCHHHHHHHHHHHHH
Confidence                0122456788888887665 456677777765544

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.20  E-value=0.014  Score=53.12  Aligned_cols=87  Identities=20%  Similarity=0.150  Sum_probs=56.3

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------Cccc----ccC---hh-hhhcCCcEEEEeccCC
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------LFPY----CAN---VY-DLAVNSDVLVVCCALT  141 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~~----~~~---l~-el~~~aDiv~~~~p~t  141 (223)
                      +..+++.|+|+|.+|+.+++.|...|.+|++++++++...       +...    ..+   ++ .-+.++|.|+++.+..
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~  308 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD  308 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence            4568999999999999999999999999999987765321       1110    112   22 2357899998888754


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEc
Q 035615          142 EQTHHIINKDVMAELGKGGMIINV  165 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~  165 (223)
                      ..+  ++-....+.+.+..+++-+
T Consensus       309 ~~n--~~~~~~~~~~~~~~ii~~~  330 (453)
T PRK09496        309 EAN--ILSSLLAKRLGAKKVIALV  330 (453)
T ss_pred             HHH--HHHHHHHHHhCCCeEEEEE
Confidence            332  2223333445544455543

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.20  E-value=0.02  Score=51.46  Aligned_cols=84  Identities=12%  Similarity=0.205  Sum_probs=60.2

Q ss_pred             cCCCEEEEEecC----------hHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCC
Q 035615           77 LGGMQVGIVRLG----------NIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        77 l~g~~vgIiG~G----------~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      |.||||||+|+-          .-...++++|+..|.+|.+|||......     +.....+++++++.||.++++... 
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew-  386 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEW-  386 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccH-
Confidence            899999999963          4567889999999999999998754332     234568899999999999998753 


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEE
Q 035615          142 EQTHHIINKDVMAELGKGGMIIN  164 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN  164 (223)
                      ++-+.+ +-+.+ .||. .++++
T Consensus       387 ~ef~~~-d~~~~-~m~~-~~v~D  406 (414)
T COG1004         387 DEFRDL-DFEKL-LMKT-PVVID  406 (414)
T ss_pred             HHHhcc-Chhhh-hccC-CEEEe
Confidence            233332 33333 5663 45554

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=96.18  E-value=0.021  Score=50.53  Aligned_cols=92  Identities=9%  Similarity=0.052  Sum_probs=66.4

Q ss_pred             ccCCCEEEEEecC--hHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEe
Q 035615           76 KLGGMQVGIVRLG--NIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        76 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~  137 (223)
                      .+.|++|++||-+  ++.++++..+..+|+++.+..|..-...              +  .....++++.++.+|+|..-
T Consensus       153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd  232 (336)
T PRK03515        153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD  232 (336)
T ss_pred             CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence            4889999999975  6899999999999999988876542111              1  22357899999999999875


Q ss_pred             c--cCC-----------hhhhhccCHHHHhcC-CCCcEEEEcCC
Q 035615          138 C--ALT-----------EQTHHIINKDVMAEL-GKGGMIINVGR  167 (223)
Q Consensus       138 ~--p~t-----------~~t~~li~~~~l~~m-k~ga~lIN~ar  167 (223)
                      .  ...           ......++++.++.. |++++|.-+.-
T Consensus       233 ~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcLP  276 (336)
T PRK03515        233 VWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCLP  276 (336)
T ss_pred             CcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCCC
Confidence            2  000           011245678888874 78898887764

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=96.18  E-value=0.034  Score=50.77  Aligned_cols=91  Identities=13%  Similarity=0.131  Sum_probs=67.0

Q ss_pred             ccCCCEEEEEec---ChHHHHHHHHHHhC-CCEEEEEcCCCCCC-C---------C--cccccChhhhhcCCcEEEEecc
Q 035615           76 KLGGMQVGIVRL---GNIGSEVLNRLQAF-GFIISYNSRRKRPS-V---------L--FPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        76 ~l~g~~vgIiG~---G~iG~~~a~~l~~~-G~~V~~~~~~~~~~-~---------~--~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      .+.|+||+++|-   +++.++++..+..+ |++|.+..|..-.. .         +  +..+.++++.++.+|+|....-
T Consensus       238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~  317 (429)
T PRK11891        238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRI  317 (429)
T ss_pred             CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence            378999999997   58999999988876 99998887654321 1         1  2235789999999999987542


Q ss_pred             CC-----hh-----hhhccCHHHHhc-CCCCcEEEEcC
Q 035615          140 LT-----EQ-----THHIINKDVMAE-LGKGGMIINVG  166 (223)
Q Consensus       140 ~t-----~~-----t~~li~~~~l~~-mk~ga~lIN~a  166 (223)
                      ..     +.     ....++++.++. .|++++|.-+.
T Consensus       318 q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcL  355 (429)
T PRK11891        318 QKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPL  355 (429)
T ss_pred             hhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCC
Confidence            11     10     124568899998 89999988665

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.17  E-value=0.012  Score=59.18  Aligned_cols=65  Identities=12%  Similarity=0.065  Sum_probs=45.4

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhC-CCE-------------EEEEcCCCCCCC-------Cc---cc-ccChhhh---h
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAF-GFI-------------ISYNSRRKRPSV-------LF---PY-CANVYDL---A  128 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~-G~~-------------V~~~~~~~~~~~-------~~---~~-~~~l~el---~  128 (223)
                      -+.++|+|||.|.||+..++.|... +++             |.+.|++.+...       +.   .. +.+.+++   +
T Consensus       567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v  646 (1042)
T PLN02819        567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYV  646 (1042)
T ss_pred             ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhh
Confidence            3478999999999999999999754 333             777887754321       11   11 3344444   4


Q ss_pred             cCCcEEEEeccCC
Q 035615          129 VNSDVLVVCCALT  141 (223)
Q Consensus       129 ~~aDiv~~~~p~t  141 (223)
                      +.+|+|++++|..
T Consensus       647 ~~~DaVIsalP~~  659 (1042)
T PLN02819        647 SQVDVVISLLPAS  659 (1042)
T ss_pred             cCCCEEEECCCch
Confidence            6899999999953

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.16  E-value=0.0095  Score=49.72  Aligned_cols=69  Identities=10%  Similarity=0.063  Sum_probs=48.2

Q ss_pred             CCCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------Cccc-ccCh-hhhhcCCcEEEEecc
Q 035615           71 YPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------LFPY-CANV-YDLAVNSDVLVVCCA  139 (223)
Q Consensus        71 ~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~~-~~~l-~el~~~aDiv~~~~p  139 (223)
                      ++..-+++|++|.|||-|.++..=++.|..+|++|.++++...+..       .... ..+. .+.+..+++|+.++.
T Consensus        17 ~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATd   94 (223)
T PRK05562         17 MFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATD   94 (223)
T ss_pred             eeeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCC
Confidence            3455678899999999999999988999999999999987654321       0100 0011 233567888877765

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=96.15  E-value=0.075  Score=48.58  Aligned_cols=95  Identities=11%  Similarity=0.064  Sum_probs=61.8

Q ss_pred             ccccCCCEEEEEec----------ChHHHHHHHHHHhCCCEEEEEcCCCCCCC--CcccccChhh-hhcCCcEEEEeccC
Q 035615           74 GFKLGGMQVGIVRL----------GNIGSEVLNRLQAFGFIISYNSRRKRPSV--LFPYCANVYD-LAVNSDVLVVCCAL  140 (223)
Q Consensus        74 ~~~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~e-l~~~aDiv~~~~p~  140 (223)
                      +..+.|++|+|+|+          ..-+..+++.|...|.+|.+||+.-....  .......+++ .++.+|.|++++..
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~h  388 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVAVGH  388 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccchhhhhcCCCEEEEccCC
Confidence            34588999999997          56688999999999999999998732211  1000111222 36789999999875


Q ss_pred             ChhhhhccCHHHH-hcCCCCcEEEEcCCCccc
Q 035615          141 TEQTHHIINKDVM-AELGKGGMIINVGRGALI  171 (223)
Q Consensus       141 t~~t~~li~~~~l-~~mk~ga~lIN~arg~~v  171 (223)
                      .+ -+. ++-+.+ +.||...++|+ +|+-+.
T Consensus       389 ~~-f~~-~~~~~~~~~~~~~~~iiD-~r~~~~  417 (425)
T PRK15182        389 QQ-FKQ-MGSEDIRGFGKDKHVLYD-LKYVLP  417 (425)
T ss_pred             HH-hhc-CCHHHHHHhcCCCCEEEE-CCCCCC
Confidence            43 222 344444 34554468888 466553

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=96.12  E-value=0.078  Score=46.04  Aligned_cols=105  Identities=14%  Similarity=0.145  Sum_probs=71.5

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHhCCCE-EEEEcCC--CCCCCCcccccChhhhhcC--CcEEEEeccCChhhhhccCHHH
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQAFGFI-ISYNSRR--KRPSVLFPYCANVYDLAVN--SDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~~G~~-V~~~~~~--~~~~~~~~~~~~l~el~~~--aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      ..+|.|.|. |.+|+.+.+.|..+|++ ++.+++.  .....+...+.+++|+-..  -|+.++++|. +.+...+ ++.
T Consensus         8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~-~~v~~~l-~e~   85 (291)
T PRK05678          8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPP-PFAADAI-LEA   85 (291)
T ss_pred             CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCH-HHHHHHH-HHH
Confidence            567999996 99999999999999986 4456766  4444566678899998887  8999999993 3344444 233


Q ss_pred             HhcCCC-CcEEEEcCCCcccCHHHHHHHHHcCCceE
Q 035615          153 MAELGK-GGMIINVGRGALIDEKEMLQFLVQGDING  187 (223)
Q Consensus       153 l~~mk~-ga~lIN~arg~~vd~~al~~aL~~~~i~~  187 (223)
                      .+ ..- .++++.-+- ..-|++.|.+..++..++-
T Consensus        86 ~~-~gvk~avI~s~Gf-~~~~~~~l~~~a~~~girv  119 (291)
T PRK05678         86 ID-AGIDLIVCITEGI-PVLDMLEVKAYLERKKTRL  119 (291)
T ss_pred             HH-CCCCEEEEECCCC-CHHHHHHHHHHHHHcCCEE
Confidence            32 232 334443332 3444458888888887763

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=96.09  E-value=0.06  Score=46.65  Aligned_cols=104  Identities=13%  Similarity=0.151  Sum_probs=70.6

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHhCCCE-EEEEcCC--CCCCCCcccccChhhhhcC--CcEEEEeccCChhhhhccCHHH
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQAFGFI-ISYNSRR--KRPSVLFPYCANVYDLAVN--SDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~~G~~-V~~~~~~--~~~~~~~~~~~~l~el~~~--aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      ..+|.|.|. |.+|+.+-+.+.+.|++ |..+++.  .....+...+.+++|+-..  .|+.++++|.. .+...+. +.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~-~v~~~l~-e~   83 (286)
T TIGR01019         6 DTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAP-FAADAIF-EA   83 (286)
T ss_pred             CCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHH-HHHHHHH-HH
Confidence            567999995 99999999999999987 3456666  3333466678899998876  69999999933 3444442 23


Q ss_pred             HhcCC-CCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          153 MAELG-KGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       153 l~~mk-~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      .+ .. +.++++.-+-++ -+++.|.+..++..++
T Consensus        84 ~~-~Gvk~avIis~Gf~e-~~~~~l~~~a~~~gir  116 (286)
T TIGR01019        84 ID-AGIELIVCITEGIPV-HDMLKVKRYMEESGTR  116 (286)
T ss_pred             HH-CCCCEEEEECCCCCH-HHHHHHHHHHHHcCCE
Confidence            32 22 233444333333 3677888888887766

ATP citrate lyases appear to form an outgroup.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.08  E-value=0.018  Score=46.04  Aligned_cols=32  Identities=25%  Similarity=0.304  Sum_probs=27.7

Q ss_pred             EEEEEecChHHHHHHHHHHhCCCE-EEEEcCCC
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRK  112 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~  112 (223)
                      +|+|+|.|.+|..+++.|...|+. +..+|...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            589999999999999999999994 87777653

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.08  E-value=0.011  Score=54.68  Aligned_cols=110  Identities=10%  Similarity=0.023  Sum_probs=69.6

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------Cccccc--ChhhhhcCCcEEEEec--c-CChh
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFPYCA--NVYDLAVNSDVLVVCC--A-LTEQ  143 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~--~l~el~~~aDiv~~~~--p-~t~~  143 (223)
                      ..+.+++|.|+|+|..|+++|+.|...|++|.++|+......      +.....  ...+.+.++|+|+..-  | .+|.
T Consensus        11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~   90 (473)
T PRK00141         11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPL   90 (473)
T ss_pred             ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHH
Confidence            357899999999999999999999999999999997543211      221111  2234466789887763  2 2232


Q ss_pred             hh-------hccCHHHHhc-------C-CC-CcEEEEcCCCcccCHHHHHHHHHcCC
Q 035615          144 TH-------HIINKDVMAE-------L-GK-GGMIINVGRGALIDEKEMLQFLVQGD  184 (223)
Q Consensus       144 t~-------~li~~~~l~~-------m-k~-ga~lIN~arg~~vd~~al~~aL~~~~  184 (223)
                      ..       .++.+-.+..       + ++ ..+-|--+-|+.--..-|...|+...
T Consensus        91 ~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g  147 (473)
T PRK00141         91 LVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG  147 (473)
T ss_pred             HHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence            11       2233322321       1 12 24555666788888888888887644

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.07  E-value=0.07  Score=44.14  Aligned_cols=91  Identities=19%  Similarity=0.137  Sum_probs=60.3

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc---c--cChhh-h----hcCCcEEEEeccCC
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY---C--ANVYD-L----AVNSDVLVVCCALT  141 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~---~--~~l~e-l----~~~aDiv~~~~p~t  141 (223)
                      ..|.+|.|.|.|.+|+.+++.++..|.+|++.++++....     +...   .  .+..+ +    -...|+++.+++..
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~  212 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP  212 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence            3588999999999999999999999999998887643211     0100   0  11111 1    24578888877532


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcCCCcccC
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVGRGALID  172 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~arg~~vd  172 (223)
                      .     .-...++.|+++..+++++.....+
T Consensus       213 ~-----~~~~~~~~l~~~G~~v~~~~~~~~~  238 (271)
T cd05188         213 E-----TLAQALRLLRPGGRIVVVGGTSGGP  238 (271)
T ss_pred             H-----HHHHHHHhcccCCEEEEEccCCCCC
Confidence            1     1244567788888899888665433

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=96.06  E-value=0.024  Score=49.40  Aligned_cols=82  Identities=16%  Similarity=0.231  Sum_probs=54.9

Q ss_pred             EEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCC-------------CC--CC-----------------cc--------
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKR-------------PS--VL-----------------FP--------  119 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~-------------~~--~~-----------------~~--------  119 (223)
                      +|.|+|.|.+|..+|+.|...|.. +..+|...-             ..  .+                 ..        
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I   80 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI   80 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence            589999999999999999999984 666653210             00  00                 00        


Q ss_pred             -----------------cccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcC
Q 035615          120 -----------------YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       120 -----------------~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                                       ....++++++++|+|+.++ .+-+++.+++.-....   +..+|+.+
T Consensus        81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~---~k~~I~aa  140 (307)
T cd01486          81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAK---NKLVINAA  140 (307)
T ss_pred             cccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHh---CCcEEEEE
Confidence                             0012467899999999988 5778888887554433   23566654

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.06  E-value=0.017  Score=53.35  Aligned_cols=107  Identities=15%  Similarity=0.097  Sum_probs=68.3

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-C-------Cccc--ccChhhhhcCCcEEEEec--c-CChh
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-V-------LFPY--CANVYDLAVNSDVLVVCC--A-LTEQ  143 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~-------~~~~--~~~l~el~~~aDiv~~~~--p-~t~~  143 (223)
                      +.|++|+|+|+|.-|.+.++.|...|++|+++|...... .       ....  .....+.+.++|+|+..-  | ..|.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~   85 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE   85 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence            568999999999999999999999999999998543211 1       1000  111234567899887763  2 2222


Q ss_pred             h-------hhccCHHH--Hhc-CC-----CCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          144 T-------HHIINKDV--MAE-LG-----KGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       144 t-------~~li~~~~--l~~-mk-----~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      .       ..++++-.  +.. ++     ...+-|--+.|+.--..-+...|+..
T Consensus        86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~  140 (468)
T PRK04690         86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAA  140 (468)
T ss_pred             HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence            1       12344333  333 31     13566666778888888888888753

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=96.05  E-value=0.022  Score=49.69  Aligned_cols=83  Identities=12%  Similarity=0.158  Sum_probs=53.6

Q ss_pred             CCEEEEEecChHHHHHHHHHHh-CCCEEE-EEcCCCCCC-------CCccc-ccChhhhhc-----CCcEEEEeccCChh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQA-FGFIIS-YNSRRKRPS-------VLFPY-CANVYDLAV-----NSDVLVVCCALTEQ  143 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~-~G~~V~-~~~~~~~~~-------~~~~~-~~~l~el~~-----~aDiv~~~~p~t~~  143 (223)
                      ..++||||.|+||+..+..+.. -++++. +++++++..       .+... +.+.+++++     +.|+|+.++|....
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H   83 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH   83 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence            4689999999999997766654 366764 566655321       12222 467888884     58889999874322


Q ss_pred             hhhccCHHHHhcCCCCcEEEEcC
Q 035615          144 THHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      .     +-.....+.|..+|+-+
T Consensus        84 ~-----e~a~~a~eaGk~VID~s  101 (302)
T PRK08300         84 V-----RHAAKLREAGIRAIDLT  101 (302)
T ss_pred             H-----HHHHHHHHcCCeEEECC
Confidence            1     11222346788888776

>PRK06392 homoserine dehydrogenase; Provisional

Probab=96.04  E-value=0.052  Score=47.89  Aligned_cols=106  Identities=12%  Similarity=0.197  Sum_probs=63.8

Q ss_pred             CEEEEEecChHHHHHHHHHHh--------CCCEEEE-EcCCCCCC--CC--------------cc-c-cc--Chhhhh-c
Q 035615           80 MQVGIVRLGNIGSEVLNRLQA--------FGFIISY-NSRRKRPS--VL--------------FP-Y-CA--NVYDLA-V  129 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~--------~G~~V~~-~~~~~~~~--~~--------------~~-~-~~--~l~el~-~  129 (223)
                      ++|+|+|+|++|+.+++.+..        ++.+|.+ .|++....  .+              .. . ..  ++++++ .
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~   80 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI   80 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence            379999999999999999875        4667654 45432110  00              00 0 11  455554 4


Q ss_pred             CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCce
Q 035615          130 NSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALI-DEKEMLQFLVQGDIN  186 (223)
Q Consensus       130 ~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~v-d~~al~~aL~~~~i~  186 (223)
                      ++|+|+=+.|....-.... .-..+.|+.|.-+|-.+.|.+. .-+.|.++.++++..
T Consensus        81 ~~DVvVE~t~~~~~g~~~~-~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~  137 (326)
T PRK06392         81 KPDVIVDVTPASKDGIREK-NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI  137 (326)
T ss_pred             CCCEEEECCCCCCcCchHH-HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence            6899988887432101111 2234456788888888877775 456666666666554

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.00  E-value=0.035  Score=45.01  Aligned_cols=62  Identities=15%  Similarity=0.165  Sum_probs=48.1

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCC---c-------ccccChhhhhcCCcEEEEeccCC
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVL---F-------PYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~---~-------~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      ++|+|||. |++|+.+++-++..|++|..+-|++.+...   .       ....++.+.+..-|+|+.+....
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~   73 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG   73 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence            58999995 999999999999999999999888765431   1       11234457788999999887433

>PRK08324 short chain dehydrogenase; Validated

Probab=95.99  E-value=0.0078  Score=58.11  Aligned_cols=106  Identities=17%  Similarity=0.132  Sum_probs=61.8

Q ss_pred             CCCccceEEEEccccchhHhHHHHHhcCCCCCCCcchHHHHHHHHHH-----HHHhCCcHHHHHHHcCCCCCCC----CC
Q 035615            1 MLCYQTNLYACILSEYQNWLKQLIKQKSIAKQADLPIVADLAIGLLI-----DFLRRISPGNWYVRAGLWAKTG----DY   71 (223)
Q Consensus         1 ~~~p~Lk~i~~~~aG~d~id~~~~~~~~i~~~~~~~~vAE~~~~~~l-----~~~r~~~~~~~~~~~~~w~~~~----~~   71 (223)
                      |+-|+=+++-..+.|+-.++..... ..+.+     .+.+.++..++     .-+..++... ...-..|....    ..
T Consensus       342 ~~~~~p~~~l~~g~g~~~~g~~~~~-a~~~~-----d~~~~~~~~~~~a~~~~~~~~l~~~~-~f~i~~~~~e~a~l~~~  414 (681)
T PRK08324        342 MLDPNPRVVLIPGLGMFSFGKDKKT-ARVAA-----DIYENAINVMRGAEAVGRYEPLSEQE-AFDIEYWSLEQAKLQRM  414 (681)
T ss_pred             ccCCCCeEEEECCCceEEeCCCHHH-hhhhH-----HHHHHHHHHHhhhhhcCCccCCChhh-hcceeeehhhhhhhhcC
Confidence            5678888888888888776654311 11111     12233333222     2222222211 11112332110    00


Q ss_pred             CCccccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           72 PLGFKLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        72 ~~~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      +....+.|+++.|.| .|.||+.+++.|...|++|+..+|+..
T Consensus       415 ~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~  457 (681)
T PRK08324        415 PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE  457 (681)
T ss_pred             CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence            123457899999999 599999999999999999999988764

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.95  E-value=0.1  Score=39.90  Aligned_cols=32  Identities=31%  Similarity=0.375  Sum_probs=28.2

Q ss_pred             EEEEEecChHHHHHHHHHHhCCC-EEEEEcCCC
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRK  112 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~  112 (223)
                      +|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999999 588887653

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=95.94  E-value=0.022  Score=44.38  Aligned_cols=85  Identities=15%  Similarity=0.107  Sum_probs=53.8

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc---ccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF---PYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~---~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      ..|++|++||+=   +.++++++..+.++.++|+++......   ......++++++||+|+++-. | -..+-+ .+.+
T Consensus         9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs-T-lvN~Ti-~~iL   82 (147)
T PF04016_consen    9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS-T-LVNGTI-DDIL   82 (147)
T ss_dssp             TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH-H-CCTTTH-HHHH
T ss_pred             cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee-e-eecCCH-HHHH
Confidence            469999999961   237778888889999999988543221   133466789999999988642 0 011112 3566


Q ss_pred             hcCCCCcEEEEcCC
Q 035615          154 AELGKGGMIINVGR  167 (223)
Q Consensus       154 ~~mk~ga~lIN~ar  167 (223)
                      +..+++..++=+|-
T Consensus        83 ~~~~~~~~vil~Gp   96 (147)
T PF04016_consen   83 ELARNAREVILYGP   96 (147)
T ss_dssp             HHTTTSSEEEEESC
T ss_pred             HhCccCCeEEEEec
Confidence            66776666666654

; PDB: 3L5O_B 3NPG_A.

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=95.93  E-value=0.075  Score=40.86  Aligned_cols=93  Identities=17%  Similarity=0.243  Sum_probs=64.3

Q ss_pred             HHHHHHHhCCCEEEEEcCCCCCC---------CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEE
Q 035615           93 EVLNRLQAFGFIISYNSRRKRPS---------VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMII  163 (223)
Q Consensus        93 ~~a~~l~~~G~~V~~~~~~~~~~---------~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lI  163 (223)
                      ..+++|...|++|++=.-.....         .++....+.++++++||+|+-.-|.+        .+.++.|++|.++|
T Consensus        18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li   89 (136)
T PF05222_consen   18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI   89 (136)
T ss_dssp             HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred             HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE
Confidence            45678888899998765443221         13333456669999999998765532        56778899999999


Q ss_pred             EcCCCcccCHHHHHHHHHcCCceEEEeeCCCC
Q 035615          164 NVGRGALIDEKEMLQFLVQGDINGVGLDVFEN  195 (223)
Q Consensus       164 N~arg~~vd~~al~~aL~~~~i~~a~lDV~~~  195 (223)
                      -...-.  ....+++.|.++++...++|....
T Consensus        90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr  119 (136)
T PF05222_consen   90 GFLHPA--QNKELLEALAKKGITAFALELIPR  119 (136)
T ss_dssp             EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred             Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence            776554  588899999999999888876544

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.91  E-value=0.019  Score=49.39  Aligned_cols=100  Identities=15%  Similarity=0.230  Sum_probs=62.7

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCCccc--ccChh-hh-hcCCcEEEEeccCChh--h---hhcc
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLFPY--CANVY-DL-AVNSDVLVVCCALTEQ--T---HHII  148 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~--~~~l~-el-~~~aDiv~~~~p~t~~--t---~~li  148 (223)
                      ++++.|+|.|..+++++..|...|+ +|.+++|+.++.+....  ..+.. ++ ...+|+|+.++|..-.  .   ...+
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi  201 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPIGMAGGPEADKLAF  201 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCccccCCCCccccCCC
Confidence            5789999999999999999999998 49999998754331110  01111 11 2458999999984311  1   0123


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          149 NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       149 ~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      +.   ..++++.+++++--.+ .+ ..|+++-++.
T Consensus       202 ~~---~~l~~~~~v~D~vY~P-~~-T~ll~~A~~~  231 (272)
T PRK12550        202 PE---AEIDAASVVFDVVALP-AE-TPLIRYARAR  231 (272)
T ss_pred             CH---HHcCCCCEEEEeecCC-cc-CHHHHHHHHC
Confidence            33   3456777888886655 23 3344444443

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.89  E-value=0.025  Score=50.00  Aligned_cols=84  Identities=17%  Similarity=0.248  Sum_probs=51.6

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHhCCC---EEEEEcCCCCCCC--Cc----ccccChh-hhhcCCcEEEEeccCChhhhhc
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQAFGF---IISYNSRRKRPSV--LF----PYCANVY-DLAVNSDVLVVCCALTEQTHHI  147 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~~G~---~V~~~~~~~~~~~--~~----~~~~~l~-el~~~aDiv~~~~p~t~~t~~l  147 (223)
                      +++|+|+| .|.+|+.+.+.|...|+   ++.+..+......  ..    ....+++ +.++.+|+|++++|.. .+..+
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~   79 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKY   79 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHH
Confidence            46899999 59999999999998665   3455543322211  10    1112222 3357899999999844 23332


Q ss_pred             cCHHHHhcCCCCcEEEEcCC
Q 035615          148 INKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       148 i~~~~l~~mk~ga~lIN~ar  167 (223)
                      . .+   .++.|+++|+.|.
T Consensus        80 ~-~~---~~~~G~~VIDlS~   95 (334)
T PRK14874         80 A-PK---AAAAGAVVIDNSS   95 (334)
T ss_pred             H-HH---HHhCCCEEEECCc
Confidence            2 11   2356889998773

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=95.88  E-value=0.0089  Score=48.35  Aligned_cols=62  Identities=16%  Similarity=0.145  Sum_probs=44.8

Q ss_pred             CEEEEEecChHHHHHHHH--HHhCCCEEE-EEcCCCCCCC----C--cccccChhhhhc--CCcEEEEeccCC
Q 035615           80 MQVGIVRLGNIGSEVLNR--LQAFGFIIS-YNSRRKRPSV----L--FPYCANVYDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~--l~~~G~~V~-~~~~~~~~~~----~--~~~~~~l~el~~--~aDiv~~~~p~t  141 (223)
                      .++.|||.|++|++++..  .+..||++. ++|..++..-    +  ....+++++.++  +.|+.++|+|..
T Consensus        85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~  157 (211)
T COG2344          85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAE  157 (211)
T ss_pred             eeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHH
Confidence            469999999999999874  357899864 7887665321    1  123456777777  678999999943

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.88  E-value=0.034  Score=48.77  Aligned_cols=85  Identities=16%  Similarity=0.194  Sum_probs=59.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----Ccccc-----cChhhhhc---CCcEEEEeccCChh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----LFPYC-----ANVYDLAV---NSDVLVVCCALTEQ  143 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~~-----~~l~el~~---~aDiv~~~~p~t~~  143 (223)
                      .|++|.|+|.|.+|...++.++..|. +|++.++++++.+     ++...     .++.++..   ..|+++-++... .
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~-~  247 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP-S  247 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH-H
Confidence            58999999999999999999999999 5888877654422     22111     12334332   268888876522 1


Q ss_pred             hhhccCHHHHhcCCCCcEEEEcCC
Q 035615          144 THHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      +   + ...++.++++..++.++.
T Consensus       248 ~---~-~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        248 S---I-NTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             H---H-HHHHHHhhcCCEEEEEcc
Confidence            1   1 356778899999998875

>PRK05086 malate dehydrogenase; Provisional

Probab=95.88  E-value=0.038  Score=48.41  Aligned_cols=90  Identities=16%  Similarity=0.178  Sum_probs=55.8

Q ss_pred             CEEEEEec-ChHHHHHHHHHHh---CCCEEEEEcCCCCCC----C--Ccc---c-----ccChhhhhcCCcEEEEeccC-
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQA---FGFIISYNSRRKRPS----V--LFP---Y-----CANVYDLAVNSDVLVVCCAL-  140 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~---~G~~V~~~~~~~~~~----~--~~~---~-----~~~l~el~~~aDiv~~~~p~-  140 (223)
                      ++|+|||. |.||+.++..+..   .+.++..+++.+...    +  ...   .     ..++.+.++.+|+|++++-. 
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            58999999 9999999987743   455788888764331    1  101   0     13556778999999999743 


Q ss_pred             -Chh-hh-hcc------CHHH---HhcCCCCcEEEEcCCCc
Q 035615          141 -TEQ-TH-HII------NKDV---MAELGKGGMIINVGRGA  169 (223)
Q Consensus       141 -t~~-t~-~li------~~~~---l~~mk~ga~lIN~arg~  169 (223)
                       .+. ++ .++      -.+.   +....+.+++++++.--
T Consensus        81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~  121 (312)
T PRK05086         81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV  121 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence             111 11 111      1222   33335678999986544

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=95.84  E-value=0.019  Score=50.13  Aligned_cols=63  Identities=19%  Similarity=0.285  Sum_probs=46.3

Q ss_pred             CCEEEEEecChHHH-HHHHHHHhCC--CE-EEEEcCCCCCCC------Cc-ccccChhhhhcC--CcEEEEeccCC
Q 035615           79 GMQVGIVRLGNIGS-EVLNRLQAFG--FI-ISYNSRRKRPSV------LF-PYCANVYDLAVN--SDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~G~iG~-~~a~~l~~~G--~~-V~~~~~~~~~~~------~~-~~~~~l~el~~~--aDiv~~~~p~t  141 (223)
                      -.++||||+|.+++ ..+..++..+  ++ |.++|+++....      +. ..+.+++++++.  -|+|++++|..
T Consensus         3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~   78 (342)
T COG0673           3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNA   78 (342)
T ss_pred             eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCCh
Confidence            35899999997775 4777887766  45 456788876532      22 357889999986  58999999954

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=95.80  E-value=0.071  Score=47.62  Aligned_cols=92  Identities=10%  Similarity=0.129  Sum_probs=64.4

Q ss_pred             ccCCCEEEEEecC--------hHHHHHHHHHHhCCCEEEEEcCCCCCC-C-------------C--cccccChhhhhcCC
Q 035615           76 KLGGMQVGIVRLG--------NIGSEVLNRLQAFGFIISYNSRRKRPS-V-------------L--FPYCANVYDLAVNS  131 (223)
Q Consensus        76 ~l~g~~vgIiG~G--------~iG~~~a~~l~~~G~~V~~~~~~~~~~-~-------------~--~~~~~~l~el~~~a  131 (223)
                      .|+|+||+|+|.|        ++.++++..+..+|++|.+..|..-.. .             +  +....++++.++.+
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a  246 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA  246 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            3789999999853        455778888899999999887753211 0             1  12357899999999


Q ss_pred             cEEEEec----c----------CCh-----------------hhhhccCHHHHhcCC-CCcEEEEcCC
Q 035615          132 DVLVVCC----A----------LTE-----------------QTHHIINKDVMAELG-KGGMIINVGR  167 (223)
Q Consensus       132 Div~~~~----p----------~t~-----------------~t~~li~~~~l~~mk-~ga~lIN~ar  167 (223)
                      |+|..-.    .          ..+                 .....++++.++.+| ++++|..+.-
T Consensus       247 Dvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vt~e~l~~a~~~~~i~MHcLP  314 (357)
T TIGR03316       247 DIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYMHCLP  314 (357)
T ss_pred             CEEEECCeeccccccccchhcccchhhhhhhhhccchhHHHHhcCCeECHHHHHhcCCCCcEEECCCC
Confidence            9998763    1          000                 012346888888888 8888887753

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=95.78  E-value=0.034  Score=48.76  Aligned_cols=78  Identities=18%  Similarity=0.155  Sum_probs=50.9

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHhCCC-EEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcC
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL  156 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~m  156 (223)
                      ..+|+||| .|-.|+.+.+.|..... ++.....+....  .   .+.++.++++|++++++|.... ..+. .+.   .
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~--~---~~~~~~~~~~DvvFlalp~~~s-~~~~-~~~---~   71 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD--A---AARRELLNAADVAILCLPDDAA-REAV-ALI---D   71 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc--c---cCchhhhcCCCEEEECCCHHHH-HHHH-HHH---H
Confidence            35899999 69999999999987643 555443332221  1   2345667889999999995422 2221 111   2


Q ss_pred             CCCcEEEEcC
Q 035615          157 GKGGMIINVG  166 (223)
Q Consensus       157 k~ga~lIN~a  166 (223)
                      +.|+.+||.|
T Consensus        72 ~~g~~VIDlS   81 (313)
T PRK11863         72 NPATRVIDAS   81 (313)
T ss_pred             hCCCEEEECC
Confidence            4688899888

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=95.78  E-value=0.038  Score=48.04  Aligned_cols=85  Identities=21%  Similarity=0.319  Sum_probs=55.3

Q ss_pred             EEEEecChHHHHHHHHHHhCC--CEEEEEcCCCCCCC----------Cc----ccc-cChhhhhcCCcEEEEeccCCh--
Q 035615           82 VGIVRLGNIGSEVLNRLQAFG--FIISYNSRRKRPSV----------LF----PYC-ANVYDLAVNSDVLVVCCALTE--  142 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~----------~~----~~~-~~l~el~~~aDiv~~~~p~t~--  142 (223)
                      |+|||.|.+|..+|-.+...|  .++..+|+......          ..    ... .+-.+.++.||+|+++.....  
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~~~   80 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRKP   80 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCCCC
Confidence            589999999999999998877  47999998765322          10    001 121467899999999985321  


Q ss_pred             h-hh--------hccC--HHHHhcCCCCcEEEEcC
Q 035615          143 Q-TH--------HIIN--KDVMAELGKGGMIINVG  166 (223)
Q Consensus       143 ~-t~--------~li~--~~~l~~mk~ga~lIN~a  166 (223)
                      . ++        .++.  .+.+....|.+++|+++
T Consensus        81 ~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s  115 (300)
T cd00300          81 GETRLDLINRNAPILRSVITNLKKYGPDAIILVVS  115 (300)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            1 11        1111  12334445789999987

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=95.76  E-value=0.077  Score=46.52  Aligned_cols=62  Identities=11%  Similarity=0.149  Sum_probs=49.0

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------CcccccChhhhhcCCcEEEEe
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------LFPYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------~~~~~~~l~el~~~aDiv~~~  137 (223)
                      .+.|+||++||- +++.++++..+..+|++|.+..|..-...             ......++++.++.+|+|..-
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d  225 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD  225 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence            478999999996 79999999999999999998887542100             112257899999999999884

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.76  E-value=0.027  Score=51.72  Aligned_cols=108  Identities=13%  Similarity=0.197  Sum_probs=70.1

Q ss_pred             cCCCEEEEEecChHHHH-HHHHHHhCCCEEEEEcCCCCCCC------Ccccc-cChhhhhcCCcEEEEec--c-CChhhh
Q 035615           77 LGGMQVGIVRLGNIGSE-VLNRLQAFGFIISYNSRRKRPSV------LFPYC-ANVYDLAVNSDVLVVCC--A-LTEQTH  145 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~-~a~~l~~~G~~V~~~~~~~~~~~------~~~~~-~~l~el~~~aDiv~~~~--p-~t~~t~  145 (223)
                      .++++|.|+|+|..|.+ +|+.|+..|++|.++|.......      +.... ....+.+..+|+|+..-  | .+|...
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~   84 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV   84 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence            56789999999999999 79999999999999997653211      11111 11234456799887763  2 222221


Q ss_pred             -------hccCH-HHHhc-CC-CCcEEEEcCCCcccCHHHHHHHHHcCC
Q 035615          146 -------HIINK-DVMAE-LG-KGGMIINVGRGALIDEKEMLQFLVQGD  184 (223)
Q Consensus       146 -------~li~~-~~l~~-mk-~ga~lIN~arg~~vd~~al~~aL~~~~  184 (223)
                             .++++ +++.. ++ ...+-|--+.|+.--..-+...|+...
T Consensus        85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence                   23443 33333 33 235666777899888888888887654

>CHL00194 ycf39 Ycf39; Provisional

Probab=95.76  E-value=0.02  Score=49.80  Aligned_cols=60  Identities=10%  Similarity=0.144  Sum_probs=44.9

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cc-------ccccChhhhhcCCcEEEEecc
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LF-------PYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~-------~~~~~l~el~~~aDiv~~~~p  139 (223)
                      ++|.|.| .|.+|+.+++.|...|++|.+.+|+..+..     +.       ....++.++++.+|+|+.+.+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            4799999 599999999999999999998888653221     11       112346677899999887653

>cd08230 glucose_DH Glucose dehydrogenase

Probab=95.73  E-value=0.023  Score=50.05  Aligned_cols=85  Identities=19%  Similarity=0.241  Sum_probs=57.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCC---CCCCC-----Ccccc----cChhh--hhcCCcEEEEeccCChh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRR---KRPSV-----LFPYC----ANVYD--LAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~---~~~~~-----~~~~~----~~l~e--l~~~aDiv~~~~p~t~~  143 (223)
                      .|.+|.|+|.|.+|...++.++..|++|++.+++   +++.+     ++...    .++.+  .....|+|+-++... .
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~-~  250 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVP-P  250 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCH-H
Confidence            5889999999999999999999999999988873   22211     21111    11111  223579998887522 1


Q ss_pred             hhhccCHHHHhcCCCCcEEEEcCC
Q 035615          144 THHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                         .+ .+.++.++++..++.++.
T Consensus       251 ---~~-~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         251 ---LA-FEALPALAPNGVVILFGV  270 (355)
T ss_pred             ---HH-HHHHHHccCCcEEEEEec
Confidence               22 456778899988888764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.73  E-value=0.024  Score=49.14  Aligned_cols=85  Identities=16%  Similarity=0.056  Sum_probs=54.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCCCCCCcc--cccChhh-hhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKRPSVLFP--YCANVYD-LAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~--~~~~l~e-l~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      .++++.|+|.|.+|...++.++.+|++ |++.++...+...+.  ...+..+ .-...|+|+-++... .+   + ...+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~-~~---~-~~~~  218 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDP-SL---I-DTLV  218 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCH-HH---H-HHHH
Confidence            477899999999999999999999998 555665543322111  1111111 123578888777522 11   2 3466


Q ss_pred             hcCCCCcEEEEcCC
Q 035615          154 AELGKGGMIINVGR  167 (223)
Q Consensus       154 ~~mk~ga~lIN~ar  167 (223)
                      +.++++..++.++-
T Consensus       219 ~~l~~~G~iv~~G~  232 (308)
T TIGR01202       219 RRLAKGGEIVLAGF  232 (308)
T ss_pred             HhhhcCcEEEEEee
Confidence            77888888887763

>PRK04148 hypothetical protein; Provisional

Probab=95.73  E-value=0.019  Score=44.06  Aligned_cols=62  Identities=10%  Similarity=0.047  Sum_probs=46.6

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------Ccc---cccChhhhhcCCcEEEEeccC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------LFP---YCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~---~~~~l~el~~~aDiv~~~~p~  140 (223)
                      +++++..||+| -|..+|+.|+..|++|++.|.++...+       .+.   .+..-.++.+.+|+|-..-|-
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp   87 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPP   87 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCC
Confidence            46889999999 999999999999999999998876432       111   122334677888888777763

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=95.72  E-value=0.038  Score=48.35  Aligned_cols=77  Identities=18%  Similarity=0.161  Sum_probs=50.9

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhC-CCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCC
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAF-GFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG  157 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk  157 (223)
                      -+|+|+|. |-.|..+.++|... .+++........    + ...+.+++++++|++++++|.. ....+. .. +  .+
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~----~-~~~~~~~~~~~~D~vFlalp~~-~s~~~~-~~-~--~~   71 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR----K-DAAERAKLLNAADVAILCLPDD-AAREAV-SL-V--DN   71 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc----c-CcCCHhHhhcCCCEEEECCCHH-HHHHHH-HH-H--Hh
Confidence            37999995 99999999999875 446554432221    1 1124567778999999999954 223222 11 1  24


Q ss_pred             CCcEEEEcC
Q 035615          158 KGGMIINVG  166 (223)
Q Consensus       158 ~ga~lIN~a  166 (223)
                      .|+.+||.|
T Consensus        72 ~g~~VIDlS   80 (310)
T TIGR01851        72 PNTCIIDAS   80 (310)
T ss_pred             CCCEEEECC
Confidence            688899888

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=95.72  E-value=0.29  Score=47.88  Aligned_cols=93  Identities=13%  Similarity=0.187  Sum_probs=72.4

Q ss_pred             CccccCCCEEEEEecChHHHHHHHHHHhCCC---EEEEEcCCCC----C---CCC----c---ccccChhhhhcCCcEEE
Q 035615           73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGF---IISYNSRRKR----P---SVL----F---PYCANVYDLAVNSDVLV  135 (223)
Q Consensus        73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~---~V~~~~~~~~----~---~~~----~---~~~~~l~el~~~aDiv~  135 (223)
                      .+..+...+|.|.|.|.-|-.+++.+...|.   +++.+|+..-    .   ...    +   ....+|.|+++.+|+++
T Consensus       179 ~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~i  258 (752)
T PRK07232        179 VGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFL  258 (752)
T ss_pred             hCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEE
Confidence            3467899999999999999999999999998   6888776531    1   110    1   12358999999999776


Q ss_pred             EeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcc
Q 035615          136 VCCALTEQTHHIINKDVMAELGKGGMIINVGRGAL  170 (223)
Q Consensus       136 ~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~  170 (223)
                      = +.    +-++|+++.++.|.+..++.=.|.-..
T Consensus       259 G-~s----~~g~~~~~~v~~M~~~piifalsNP~~  288 (752)
T PRK07232        259 G-LS----AAGVLTPEMVKSMADNPIIFALANPDP  288 (752)
T ss_pred             E-cC----CCCCCCHHHHHHhccCCEEEecCCCCc
Confidence            4 32    258999999999999999999888775

>PRK12862 malic enzyme; Reviewed

Probab=95.72  E-value=0.21  Score=48.92  Aligned_cols=93  Identities=11%  Similarity=0.191  Sum_probs=72.2

Q ss_pred             CccccCCCEEEEEecChHHHHHHHHHHhCCC---EEEEEcCCC-----CC--CC----Cc---ccccChhhhhcCCcEEE
Q 035615           73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGF---IISYNSRRK-----RP--SV----LF---PYCANVYDLAVNSDVLV  135 (223)
Q Consensus        73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~---~V~~~~~~~-----~~--~~----~~---~~~~~l~el~~~aDiv~  135 (223)
                      .++.++..+|.|.|.|.-|-.+|+.+...|.   +++.+|+..     +.  ..    .+   ....+|.|+++.+|+++
T Consensus       187 ~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~i  266 (763)
T PRK12862        187 VGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFL  266 (763)
T ss_pred             hCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEE
Confidence            3567899999999999999999999999998   688888542     11  11    00   12357999999999876


Q ss_pred             EeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcc
Q 035615          136 VCCALTEQTHHIINKDVMAELGKGGMIINVGRGAL  170 (223)
Q Consensus       136 ~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~  170 (223)
                      = +.    +-++|+++.++.|.+..++.=.|.-..
T Consensus       267 G-~s----~~g~~~~~~v~~M~~~piifalsNP~~  296 (763)
T PRK12862        267 G-LS----AAGVLKPEMVKKMAPRPLIFALANPTP  296 (763)
T ss_pred             E-cC----CCCCCCHHHHHHhccCCEEEeCCCCcc
Confidence            4 32    257899999999999999999888764

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=95.71  E-value=0.11  Score=47.06  Aligned_cols=128  Identities=19%  Similarity=0.200  Sum_probs=83.3

Q ss_pred             CccccCCCEEEEEecChHHHHHHHHHHhCCC---EEEEEcCCCCCCC--------Cccc---------ccChhhhhcCCc
Q 035615           73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGF---IISYNSRRKRPSV--------LFPY---------CANVYDLAVNSD  132 (223)
Q Consensus        73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~---~V~~~~~~~~~~~--------~~~~---------~~~l~el~~~aD  132 (223)
                      .++.|+..+|.+.|.|.-|-++++.+++.|+   +|+.+|+..--.+        ....         ... ++.+..+|
T Consensus       193 ~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~ad  271 (432)
T COG0281         193 TGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGAD  271 (432)
T ss_pred             hCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCC
Confidence            4677999999999999999999999999999   4888887632110        0000         011 44678899


Q ss_pred             EEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcC-CceEEEeeCCCCCCCCCCCCCCCCceE
Q 035615          133 VLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGAL-IDEKEMLQFLVQG-DINGVGLDVFENDPNVPKEPLRLDNIV  210 (223)
Q Consensus       133 iv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~-vd~~al~~aL~~~-~i~~a~lDV~~~EP~~~~~l~~~~nv~  210 (223)
                      +++=+-     ..+.|.++.++.|.+..++.=.|.-.. +..+++.+ ...+ .|.+     + .-|..|   -+..|++
T Consensus       272 v~iG~S-----~~G~~t~e~V~~Ma~~PiIfalaNP~pEi~Pe~a~~-~~~~aaiva-----T-Grsd~P---nQvNNvL  336 (432)
T COG0281         272 VLIGVS-----GVGAFTEEMVKEMAKHPIIFALANPTPEITPEDAKE-WGDGAAIVA-----T-GRSDYP---NQVNNVL  336 (432)
T ss_pred             EEEEcC-----CCCCcCHHHHHHhccCCEEeecCCCCccCCHHHHhh-cCCCCEEEE-----e-CCCCCc---cccccee
Confidence            876542     238999999999999999998887653 22222222 1111 2321     1 222111   1677899


Q ss_pred             EccCCC
Q 035615          211 LLPCQN  216 (223)
Q Consensus       211 ~TPH~a  216 (223)
                      +-|-+.
T Consensus       337 ~FPgIf  342 (432)
T COG0281         337 IFPGIF  342 (432)
T ss_pred             Ecchhh
Confidence            888764

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.71  E-value=0.022  Score=52.38  Aligned_cols=106  Identities=16%  Similarity=0.117  Sum_probs=65.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCC-------cccccChhhhhcCCcEEEEec--c-CChhhh--
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVL-------FPYCANVYDLAVNSDVLVVCC--A-LTEQTH--  145 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~-------~~~~~~l~el~~~aDiv~~~~--p-~t~~t~--  145 (223)
                      .|++|+|+|+|.-|.++++.|+. |++|+++|........       ........+.+.++|+|+..-  | .+|...  
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a   83 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA   83 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence            48899999999999999999995 9999999854332110       000011234567899887763  2 222211  


Q ss_pred             -----hccCHH-HH-hcCCC-CcEEEEcCCCcccCHHHHHHHHHcCC
Q 035615          146 -----HIINKD-VM-AELGK-GGMIINVGRGALIDEKEMLQFLVQGD  184 (223)
Q Consensus       146 -----~li~~~-~l-~~mk~-ga~lIN~arg~~vd~~al~~aL~~~~  184 (223)
                           .++++- ++ ..++. ..+=|--+.|+.--..-+...|+...
T Consensus        84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g  130 (454)
T PRK01368         84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNG  130 (454)
T ss_pred             HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence                 233332 32 33332 24555666788888888888888633

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=95.70  E-value=0.0073  Score=44.80  Aligned_cols=95  Identities=18%  Similarity=0.291  Sum_probs=58.1

Q ss_pred             ecChHHHHHHHHHHhC----CCEEE-EEcCCC--CCC-----CCcccccChhhhhc--CCcEEEEeccCChhhhhccCHH
Q 035615           86 RLGNIGSEVLNRLQAF----GFIIS-YNSRRK--RPS-----VLFPYCANVYDLAV--NSDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        86 G~G~iG~~~a~~l~~~----G~~V~-~~~~~~--~~~-----~~~~~~~~l~el~~--~aDiv~~~~p~t~~t~~li~~~  151 (223)
                      |+|.||+.+++.+...    ++++. +++++.  ...     .......++++++.  ..|+|+=|.+..+..     +-
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~-----~~   75 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVA-----EY   75 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHH-----HH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHH-----HH
Confidence            8999999999999865    67765 556661  111     12234678999988  899999885532222     22


Q ss_pred             HHhcCCCCcEEEEcCCCccc---CHHHHHHHHHcCCc
Q 035615          152 VMAELGKGGMIINVGRGALI---DEKEMLQFLVQGDI  185 (223)
Q Consensus       152 ~l~~mk~ga~lIN~arg~~v---d~~al~~aL~~~~i  185 (223)
                      ..+.|+.|.-+|-.+-+.+.   ..+.|.++.++++.
T Consensus        76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~  112 (117)
T PF03447_consen   76 YEKALERGKHVVTANKGALADEALYEELREAARKNGV  112 (117)
T ss_dssp             HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCC
Confidence            34556788899999888888   33445555554443

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.70  E-value=0.038  Score=50.26  Aligned_cols=68  Identities=9%  Similarity=0.009  Sum_probs=53.0

Q ss_pred             ccccCCCEEEEEec----------ChHHHHHHHHHHhCC-CEEEEEcCCCCCCC----CcccccChhhhhcCCcEEEEec
Q 035615           74 GFKLGGMQVGIVRL----------GNIGSEVLNRLQAFG-FIISYNSRRKRPSV----LFPYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        74 ~~~l~g~~vgIiG~----------G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~----~~~~~~~l~el~~~aDiv~~~~  138 (223)
                      +.++.|++|+|+|+          ..-...+++.|+..| .+|.+||+.-....    ......++++.++.+|.|+++.
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t  394 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV  394 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence            45688999999997          456789999999996 99999998743321    1123468889999999999998


Q ss_pred             cCC
Q 035615          139 ALT  141 (223)
Q Consensus       139 p~t  141 (223)
                      +..
T Consensus       395 ~~~  397 (415)
T PRK11064        395 DHS  397 (415)
T ss_pred             CCH
Confidence            754

>PLN02602 lactate dehydrogenase

Probab=95.70  E-value=0.03  Score=49.90  Aligned_cols=86  Identities=13%  Similarity=0.221  Sum_probs=56.4

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCCC-------------cccc---cChhhhhcCCcEEEEeccCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSVL-------------FPYC---ANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~-------------~~~~---~~l~el~~~aDiv~~~~p~t  141 (223)
                      ++|+|||.|.+|..+|-.+...|.  ++..+|.......+             ....   .+. +.+++||+|+++.-..
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~  116 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR  116 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence            699999999999999999886665  68889986653321             0111   233 4489999999986321


Q ss_pred             --h-hhh-hcc--C-------HHHHhcCCCCcEEEEcC
Q 035615          142 --E-QTH-HII--N-------KDVMAELGKGGMIINVG  166 (223)
Q Consensus       142 --~-~t~-~li--~-------~~~l~~mk~ga~lIN~a  166 (223)
                        + +++ .++  |       .+.+....|.+++|+++
T Consensus       117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt  154 (350)
T PLN02602        117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS  154 (350)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence              1 122 122  1       12334456788999987

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.69  E-value=0.032  Score=50.94  Aligned_cols=109  Identities=11%  Similarity=0.156  Sum_probs=69.1

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------Ccccc--cChhhhhcCCcEEEEecc---CCh
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------LFPYC--ANVYDLAVNSDVLVVCCA---LTE  142 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~--~~l~el~~~aDiv~~~~p---~t~  142 (223)
                      +.++++.|+|.|.+|.++|+.|...|++|.++|.......         +....  ...++.+..+|+|+..--   ..|
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p   82 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP   82 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence            5689999999999999999999999999999986554310         11111  112334568999887642   223


Q ss_pred             hhh-------hccC-HHHHhc-CC---CCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 035615          143 QTH-------HIIN-KDVMAE-LG---KGGMIINVGRGALIDEKEMLQFLVQGDI  185 (223)
Q Consensus       143 ~t~-------~li~-~~~l~~-mk---~ga~lIN~arg~~vd~~al~~aL~~~~i  185 (223)
                      ...       .++. .+++.. ++   ...+-|--+.|+.--..-+...|+....
T Consensus        83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~  137 (445)
T PRK04308         83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGL  137 (445)
T ss_pred             HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence            221       1222 233333 32   2355666667888877778888876443

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=95.67  E-value=0.079  Score=46.98  Aligned_cols=92  Identities=12%  Similarity=0.100  Sum_probs=63.7

Q ss_pred             ccCCCEEEEEec---ChHHHHHHHHHH-hCCCEEEEEcCCCCCCC------------CcccccChhhhhcCCcEEEEecc
Q 035615           76 KLGGMQVGIVRL---GNIGSEVLNRLQ-AFGFIISYNSRRKRPSV------------LFPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        76 ~l~g~~vgIiG~---G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~------------~~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      .+.|+||+++|=   +++..+.+..+. -+|++|.+..|..-...            .+....++++.++.+|+|....-
T Consensus       156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~~  235 (338)
T PRK08192        156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLTRI  235 (338)
T ss_pred             CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEcCc
Confidence            588999999997   588888888766 44999988876542211            12235789999999999988421


Q ss_pred             CC------hh-----hhhccCHHHH-hcCCCCcEEEEcCC
Q 035615          140 LT------EQ-----THHIINKDVM-AELGKGGMIINVGR  167 (223)
Q Consensus       140 ~t------~~-----t~~li~~~~l-~~mk~ga~lIN~ar  167 (223)
                      -.      +.     -...++++.+ +.+|++++|.-+.-
T Consensus       236 q~e~~~~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHcLP  275 (338)
T PRK08192        236 QEERFPSQEEANKYRGKFRLNQSIYTQHCKSNTVIMHPLP  275 (338)
T ss_pred             ccccccchHHHHHhhhccccCHHHHHhhhCCCCEEECCCC
Confidence            10      11     1145677777 45889999887763

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=95.62  E-value=0.05  Score=48.34  Aligned_cols=83  Identities=22%  Similarity=0.298  Sum_probs=50.6

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHHhCCC---EEEEE-c-CCCCCCCCc--c--cccChh-hhhcCCcEEEEeccCChhhhh
Q 035615           78 GGMQVGIVR-LGNIGSEVLNRLQAFGF---IISYN-S-RRKRPSVLF--P--YCANVY-DLAVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        78 ~g~~vgIiG-~G~iG~~~a~~l~~~G~---~V~~~-~-~~~~~~~~~--~--~~~~l~-el~~~aDiv~~~~p~t~~t~~  146 (223)
                      ...+|+|+| .|.+|+.+.+.|...++   ++.+. + ++..+....  .  .+.+++ +.+..+|+|++++|.. ....
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~   84 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKK   84 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHH
Confidence            357899999 59999999999988555   34333 2 222111111  0  112222 4458899999999854 2222


Q ss_pred             ccCHHHHhc-CCCCcEEEEcC
Q 035615          147 IINKDVMAE-LGKGGMIINVG  166 (223)
Q Consensus       147 li~~~~l~~-mk~ga~lIN~a  166 (223)
                      +     ... .+.|+.+||.|
T Consensus        85 ~-----~~~~~~~g~~VIDlS  100 (344)
T PLN02383         85 F-----GPIAVDKGAVVVDNS  100 (344)
T ss_pred             H-----HHHHHhCCCEEEECC
Confidence            2     222 25688899888

>PLN00106 malate dehydrogenase

Probab=95.61  E-value=0.043  Score=48.34  Aligned_cols=92  Identities=13%  Similarity=0.188  Sum_probs=58.9

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHHhCCC--EEEEEcCCCCCC---C------Ccc-----cccChhhhhcCCcEEEEeccC
Q 035615           78 GGMQVGIVRL-GNIGSEVLNRLQAFGF--IISYNSRRKRPS---V------LFP-----YCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~---~------~~~-----~~~~l~el~~~aDiv~~~~p~  140 (223)
                      ..++|+|+|. |++|..+|..|...+.  ++..+|..+...   +      ...     ...++.+.++.||+|+++.-.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~   96 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV   96 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence            4579999999 9999999999985554  788888765211   1      001     123346789999999998632


Q ss_pred             --Ch-hhhh-cc--C----H---HHHhcCCCCcEEEEcCCCc
Q 035615          141 --TE-QTHH-II--N----K---DVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       141 --t~-~t~~-li--~----~---~~l~~mk~ga~lIN~arg~  169 (223)
                        .+ .++. ++  |    .   +.+....+.+++++++.--
T Consensus        97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv  138 (323)
T PLN00106         97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV  138 (323)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence              21 1121 11  1    1   2333345789999987654

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=95.59  E-value=0.09  Score=46.54  Aligned_cols=93  Identities=10%  Similarity=0.044  Sum_probs=67.1

Q ss_pred             ccCCCEEEEEecC--hHHHHHHHHHHhCCCEEEEEcCCCCCC-C-------------C--cccccChhhhhcCCcEEEEe
Q 035615           76 KLGGMQVGIVRLG--NIGSEVLNRLQAFGFIISYNSRRKRPS-V-------------L--FPYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        76 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~-~-------------~--~~~~~~l~el~~~aDiv~~~  137 (223)
                      .+.|++|+++|-+  ++.++++..+..+|++|.+..|..-.. .             +  +....++++.++.+|+|..-
T Consensus       153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~  232 (334)
T PRK12562        153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD  232 (334)
T ss_pred             CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4789999999975  789999999999999998887654211 0             1  22357899999999999875


Q ss_pred             c------cCC--hh-----hhhccCHHHHhcC-CCCcEEEEcCCC
Q 035615          138 C------ALT--EQ-----THHIINKDVMAEL-GKGGMIINVGRG  168 (223)
Q Consensus       138 ~------p~t--~~-----t~~li~~~~l~~m-k~ga~lIN~arg  168 (223)
                      .      ...  ++     -..-++++.++.. |++++|.-+.-.
T Consensus       233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcLP~  277 (334)
T PRK12562        233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCLPA  277 (334)
T ss_pred             CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCCCC
Confidence            4      100  01     1245688888885 789999887643

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=95.57  E-value=0.034  Score=49.06  Aligned_cols=29  Identities=31%  Similarity=0.411  Sum_probs=23.5

Q ss_pred             EEEEEecChHHHHHHHHHHhCC----CEEEEEc
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFG----FIISYNS  109 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~  109 (223)
                      +|||+|+|+||+.+.+.+...+    ++|...+
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaIn   33 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALN   33 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEe
Confidence            5899999999999999987653    7776554

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=95.56  E-value=0.024  Score=49.25  Aligned_cols=91  Identities=13%  Similarity=0.214  Sum_probs=67.0

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------------Cccc----------ccChh
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------------LFPY----------CANVY  125 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------------~~~~----------~~~l~  125 (223)
                      -..+..++-++|+|-.|-..+...+..|+-|..++-.+...+                   ++..          ..-+.
T Consensus       160 gtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a  239 (356)
T COG3288         160 GTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVA  239 (356)
T ss_pred             ccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHH
Confidence            346778899999999999999999999999988775442211                   1111          12234


Q ss_pred             hhhcCCcEEEEec--cCChhhhhccCHHHHhcCCCCcEEEEcC
Q 035615          126 DLAVNSDVLVVCC--ALTEQTHHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       126 el~~~aDiv~~~~--p~t~~t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      +..++.|+|+...  |..|. -.++.++..+.||||+++|+.+
T Consensus       240 ~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA  281 (356)
T COG3288         240 EQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA  281 (356)
T ss_pred             HHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence            5678999998764  54443 4578899999999999999986

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=95.55  E-value=0.07  Score=46.65  Aligned_cols=59  Identities=22%  Similarity=0.246  Sum_probs=42.6

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCCC--EEEEEcCCC--CCCC-------------Cc-cc--c-cChhhhhcCCcEEEEe
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFGF--IISYNSRRK--RPSV-------------LF-PY--C-ANVYDLAVNSDVLVVC  137 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~--~~~~-------------~~-~~--~-~~l~el~~~aDiv~~~  137 (223)
                      ++|+|+|. |.+|..++..+...|.  +|+.+|+..  ....             .. ..  . .+ .+.++.||+|+++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence            58999997 9999999999988776  488888844  2211             00 01  1 23 3458999999999


Q ss_pred             cc
Q 035615          138 CA  139 (223)
Q Consensus       138 ~p  139 (223)
                      ..
T Consensus        80 ag   81 (309)
T cd05294          80 AG   81 (309)
T ss_pred             cC
Confidence            85

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK07806 short chain dehydrogenase; Provisional

Probab=95.53  E-value=0.059  Score=44.57  Aligned_cols=36  Identities=25%  Similarity=0.286  Sum_probs=32.1

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      +.++++.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~   40 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK   40 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence            67899999996 9999999999999999998877754

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=95.49  E-value=0.13  Score=46.54  Aligned_cols=92  Identities=10%  Similarity=0.177  Sum_probs=65.7

Q ss_pred             ccCCCEEEEEec-----C---hHHHHHHHHHHhCCCEEEEEcCCCCCC-C-------------C--cccccChhhhhcCC
Q 035615           76 KLGGMQVGIVRL-----G---NIGSEVLNRLQAFGFIISYNSRRKRPS-V-------------L--FPYCANVYDLAVNS  131 (223)
Q Consensus        76 ~l~g~~vgIiG~-----G---~iG~~~a~~l~~~G~~V~~~~~~~~~~-~-------------~--~~~~~~l~el~~~a  131 (223)
                      .+.|+||+|+|-     |   ++.++++..+..+|++|.+..|..-.. .             +  +....++++.++.+
T Consensus       184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a  263 (395)
T PRK07200        184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA  263 (395)
T ss_pred             ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            378999999985     5   567899999999999999888753211 0             1  22357899999999


Q ss_pred             cEEEEeccC-----C---------h-----------------hhhhccCHHHHhcCCCC-cEEEEcCC
Q 035615          132 DVLVVCCAL-----T---------E-----------------QTHHIINKDVMAELGKG-GMIINVGR  167 (223)
Q Consensus       132 Div~~~~p~-----t---------~-----------------~t~~li~~~~l~~mk~g-a~lIN~ar  167 (223)
                      |+|..-.=.     .         +                 ....-++++.++..|++ ++|.-+.-
T Consensus       264 DvVYtd~W~sm~~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~elm~~a~~~~ai~MHcLP  331 (395)
T PRK07200        264 DIVYPKSWAPYKVMEERTELYRAGDHEGIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMHCLP  331 (395)
T ss_pred             CEEEEcCeeecccccccccccccccchhhhhhhhhhhHHHHHccCCCcCHHHHhccCCCCcEEECCCC
Confidence            999876300     0         0                 12234678888888885 88888764

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=95.48  E-value=0.045  Score=46.65  Aligned_cols=85  Identities=18%  Similarity=0.170  Sum_probs=56.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCCCCC-----Ccccc---cChhh----hh--cCCcEEEEeccCCh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKRPSV-----LFPYC---ANVYD----LA--VNSDVLVVCCALTE  142 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~-----~~~~~---~~l~e----l~--~~aDiv~~~~p~t~  142 (223)
                      .|.+|.|+|.|.+|...++.++.+|.+ |++.++++++.+     ++...   .+..+    +.  ...|+++-++....
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~  199 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATA  199 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChH
Confidence            589999999999999999999999997 877776654321     22111   11111    11  24788887664221


Q ss_pred             hhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          143 QTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       143 ~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                          .+ ...++.++++..++.++-
T Consensus       200 ----~~-~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       200 ----AV-RACLESLDVGGTAVLAGS  219 (280)
T ss_pred             ----HH-HHHHHHhcCCCEEEEecc
Confidence                12 345677888888888773

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=95.40  E-value=0.068  Score=46.28  Aligned_cols=83  Identities=14%  Similarity=0.191  Sum_probs=51.9

Q ss_pred             CEEEEEecChHHHHHHHHHHh-CCCEEE-EEcCCCCCCC-------Ccc-cccChhhhhc--CCcEEEEeccCChhhhhc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQA-FGFIIS-YNSRRKRPSV-------LFP-YCANVYDLAV--NSDVLVVCCALTEQTHHI  147 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~-~~~~~~~~~~-------~~~-~~~~l~el~~--~aDiv~~~~p~t~~t~~l  147 (223)
                      .+|||||.|+||+..+..+.. -++++. +++++++...       +.. .+.+.++++.  +-|+|+++.|.....+  
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e--   79 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHAR--   79 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHH--
Confidence            479999999999988766654 467765 5666554311       222 2457888875  5788999998442211  


Q ss_pred             cCHHHHhcCCCCcEEEEcCC
Q 035615          148 INKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       148 i~~~~l~~mk~ga~lIN~ar  167 (223)
                         .....++.|..+|+-.-
T Consensus        80 ---~a~~al~aGk~VIdekP   96 (285)
T TIGR03215        80 ---HARLLAELGKIVIDLTP   96 (285)
T ss_pred             ---HHHHHHHcCCEEEECCc
Confidence               12233456666665543

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.40  E-value=0.034  Score=50.84  Aligned_cols=106  Identities=17%  Similarity=0.139  Sum_probs=66.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------Ccccc--cChhhhhcCCcEEEEec--c-CChh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------LFPYC--ANVYDLAVNSDVLVVCC--A-LTEQ  143 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~--~~l~el~~~aDiv~~~~--p-~t~~  143 (223)
                      ++-+++|+|+|.+|.++|+.|...|++|.++|.......         +....  ..-.+.+.++|+|+..-  | .+|.
T Consensus         5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~   84 (448)
T PRK03803          5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPA   84 (448)
T ss_pred             cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHH
Confidence            356899999999999999999999999999996543210         11111  11234466889887653  2 2222


Q ss_pred             hh-------hccCH-HHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          144 TH-------HIINK-DVMA-ELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       144 t~-------~li~~-~~l~-~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      ..       .++.+ +++. .++...+-|--+.|+.--..-+...|+..
T Consensus        85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~  133 (448)
T PRK03803         85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAA  133 (448)
T ss_pred             HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence            11       13332 2332 23434566666688888888888888763

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=95.39  E-value=0.1  Score=46.20  Aligned_cols=84  Identities=17%  Similarity=0.276  Sum_probs=53.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC------CCcccc---c---ChhhhhcCCcEEEEeccCChhhh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS------VLFPYC---A---NVYDLAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~---~---~l~el~~~aDiv~~~~p~t~~t~  145 (223)
                      .|++|.|.|.|.+|...++.++.+|.+|++.+.+..+.      .++...   .   .+.++....|+++-++... .+ 
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~-~~-  260 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAV-HA-  260 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCH-HH-
Confidence            58899999999999999999999999987765544321      122111   1   1223334578888776421 11 


Q ss_pred             hccCHHHHhcCCCCcEEEEcC
Q 035615          146 HIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~a  166 (223)
                        + .+.++.++++..++.++
T Consensus       261 --~-~~~~~~l~~~G~iv~vG  278 (360)
T PLN02586        261 --L-GPLLGLLKVNGKLITLG  278 (360)
T ss_pred             --H-HHHHHHhcCCcEEEEeC
Confidence              1 23455666666666654

>PRK14851 hypothetical protein; Provisional

Probab=95.38  E-value=0.048  Score=52.66  Aligned_cols=36  Identities=19%  Similarity=0.244  Sum_probs=31.1

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSR  110 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~  110 (223)
                      ..|++++|+|+|+|.+|..+++.|...|. ++..+|.
T Consensus        39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~   75 (679)
T PRK14851         39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADF   75 (679)
T ss_pred             HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcC
Confidence            46999999999999999999999999998 4666553

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=95.37  E-value=0.038  Score=48.34  Aligned_cols=59  Identities=24%  Similarity=0.365  Sum_probs=42.4

Q ss_pred             EEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC----------Cc------ccccChhhhhcCCcEEEEecc
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV----------LF------PYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~----------~~------~~~~~l~el~~~aDiv~~~~p  139 (223)
                      +|+|||.|.+|..+|-.+...+.  ++..+|.......          .+      ....+-.+.++.||+|+++.-
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG   77 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG   77 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence            58999999999999998876665  6888888654322          00      011223467899999999874

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.36  E-value=0.039  Score=37.93  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=31.9

Q ss_pred             EEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS  115 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~  115 (223)
                      ++.|||-|.+|-.+|..++.+|.+|..+.+.+...
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            58999999999999999999999999998877655

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK08374 homoserine dehydrogenase; Provisional

Probab=95.25  E-value=0.13  Score=45.53  Aligned_cols=114  Identities=15%  Similarity=0.257  Sum_probs=64.6

Q ss_pred             CEEEEEecChHHHHHHHHHHh--------CC--CEEEEE-cCCCCC--CCCc---------------cc--------ccC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQA--------FG--FIISYN-SRRKRP--SVLF---------------PY--------CAN  123 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~--------~G--~~V~~~-~~~~~~--~~~~---------------~~--------~~~  123 (223)
                      .+|+|+|+|++|+.+++.+..        +|  .+|.++ |++...  ..+.               ..        ..+
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS   82 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence            589999999999999998865        56  565543 433111  0000               00        115


Q ss_pred             hhhhh--cCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCce-EEEeeCCCCCCC
Q 035615          124 VYDLA--VNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALI-DEKEMLQFLVQGDIN-GVGLDVFENDPN  198 (223)
Q Consensus       124 l~el~--~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~v-d~~al~~aL~~~~i~-~a~lDV~~~EP~  198 (223)
                      +++++  ..+|+|+-+.+.. ....+    ..+.++.|.-+|-...|.+. ..+.|.+..++++.. .+.-.|...-|.
T Consensus        83 ~~ell~~~~~DVvVd~t~~~-~a~~~----~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPi  156 (336)
T PRK08374         83 PEEIVEEIDADIVVDVTNDK-NAHEW----HLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPI  156 (336)
T ss_pred             HHHHHhcCCCCEEEECCCcH-HHHHH----HHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCc
Confidence            66777  4799998777422 22222    22335566667766565443 555666665554443 233345555554

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=95.25  E-value=0.07  Score=46.85  Aligned_cols=88  Identities=16%  Similarity=0.164  Sum_probs=55.8

Q ss_pred             CCCEEEEEecChHHHHHHHHHHh-CC-CEEEEEcCCCCCCCCc---ccccChhhhhc--CCcEEEEeccCChhhhhccCH
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQA-FG-FIISYNSRRKRPSVLF---PYCANVYDLAV--NSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~-~G-~~V~~~~~~~~~~~~~---~~~~~l~el~~--~aDiv~~~~p~t~~t~~li~~  150 (223)
                      .|.+|.|+|.|.+|...++.++. +| .+|++.++++.+.+.+   ......+++.+  ..|+|+-++... .+...+ .
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G~~-~~~~~~-~  240 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVGGR-GSQSAI-N  240 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCCCC-ccHHHH-H
Confidence            48899999999999999998886 54 5788888776543211   11111222222  378888877521 011112 3


Q ss_pred             HHHhcCCCCcEEEEcCC
Q 035615          151 DVMAELGKGGMIINVGR  167 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~ar  167 (223)
                      +.++.++++..++.++-
T Consensus       241 ~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         241 QIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             HHHHhCcCCcEEEEEee
Confidence            46778888888887763

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=95.24  E-value=0.11  Score=45.49  Aligned_cols=88  Identities=14%  Similarity=0.181  Sum_probs=56.9

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCCC--EEEEEcCCCCCCC------Cc----cc--c---cChhhhhcCCcEEEEeccC-
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFGF--IISYNSRRKRPSV------LF----PY--C---ANVYDLAVNSDVLVVCCAL-  140 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~------~~----~~--~---~~l~el~~~aDiv~~~~p~-  140 (223)
                      ++|+|||. |++|..+|-.+...|.  ++..+|.. ....      ..    ..  .   +++.+.++.||+|+++.-. 
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~   79 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP   79 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence            48999999 9999999999987675  68888876 2211      11    11  1   1235779999999998743 


Q ss_pred             -Ch-hhhh-cc--CH-------HHHhcCCCCcEEEEcCCC
Q 035615          141 -TE-QTHH-II--NK-------DVMAELGKGGMIINVGRG  168 (223)
Q Consensus       141 -t~-~t~~-li--~~-------~~l~~mk~ga~lIN~arg  168 (223)
                       .| ++|- ++  |.       +.+....|.+++|+++.-
T Consensus        80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP  119 (310)
T cd01337          80 RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP  119 (310)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence             22 1221 22  11       233444688999998654

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK10206 putative oxidoreductase; Provisional

Probab=95.22  E-value=0.035  Score=49.20  Aligned_cols=62  Identities=11%  Similarity=0.284  Sum_probs=42.0

Q ss_pred             CEEEEEecChHHHH-HHHHHHh--CCCEEE-EEcCCCCCCC------CcccccChhhhhc--CCcEEEEeccCC
Q 035615           80 MQVGIVRLGNIGSE-VLNRLQA--FGFIIS-YNSRRKRPSV------LFPYCANVYDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG~G~iG~~-~a~~l~~--~G~~V~-~~~~~~~~~~------~~~~~~~l~el~~--~aDiv~~~~p~t  141 (223)
                      .++||||+|.|++. .+..+..  -++++. ++|++++...      ....+.+++++++  +.|+|++++|..
T Consensus         2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~   75 (344)
T PRK10206          2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD   75 (344)
T ss_pred             eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence            37999999998764 3443432  267765 6787653221      1234678999996  579999999854

>PRK10537 voltage-gated potassium channel; Provisional

Probab=95.20  E-value=0.066  Score=48.47  Aligned_cols=83  Identities=6%  Similarity=-0.070  Sum_probs=52.3

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC---CCccc----ccC---hhh-hhcCCcEEEEeccCChhhhhc
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS---VLFPY----CAN---VYD-LAVNSDVLVVCCALTEQTHHI  147 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---~~~~~----~~~---l~e-l~~~aDiv~~~~p~t~~t~~l  147 (223)
                      ..++-|+|+|++|+.+++.|+..|.++.+.+.+....   .+...    ..+   +++ =+++|+.|+++.+..+++..+
T Consensus       240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~i  319 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFV  319 (393)
T ss_pred             CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHH
Confidence            5679999999999999999999998887776542211   11110    112   222 256899998888765544433


Q ss_pred             cCHHHHhcCCCCcEEE
Q 035615          148 INKDVMAELGKGGMII  163 (223)
Q Consensus       148 i~~~~l~~mk~ga~lI  163 (223)
                        ....+.+.|+..+|
T Consensus       320 --vL~ar~l~p~~kII  333 (393)
T PRK10537        320 --VLAAKEMSSDVKTV  333 (393)
T ss_pred             --HHHHHHhCCCCcEE
Confidence              23445555654444

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=95.20  E-value=0.086  Score=46.22  Aligned_cols=88  Identities=18%  Similarity=0.220  Sum_probs=56.0

Q ss_pred             EEEEEec-ChHHHHHHHHHHhCCC--EEEEEcCCCCCCC-----Cc----ccc----c-ChhhhhcCCcEEEEeccCC--
Q 035615           81 QVGIVRL-GNIGSEVLNRLQAFGF--IISYNSRRKRPSV-----LF----PYC----A-NVYDLAVNSDVLVVCCALT--  141 (223)
Q Consensus        81 ~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-----~~----~~~----~-~l~el~~~aDiv~~~~p~t--  141 (223)
                      +|+|||. |.+|..+|-.|...+.  ++..+|..+....     ..    ...    . ++.+.++.||+|+++....  
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            5899999 9999999998876554  6888887662111     11    111    1 2367899999999987432  


Q ss_pred             h-hhh-hcc--CH-------HHHhcCCCCcEEEEcCCC
Q 035615          142 E-QTH-HII--NK-------DVMAELGKGGMIINVGRG  168 (223)
Q Consensus       142 ~-~t~-~li--~~-------~~l~~mk~ga~lIN~arg  168 (223)
                      + .++ .++  |.       +.+....|.+++|+++.-
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP  118 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP  118 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence            1 111 111  11       233444689999998653

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=95.19  E-value=0.11  Score=44.27  Aligned_cols=121  Identities=16%  Similarity=0.122  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhC----CC-------EEE
Q 035615           38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAF----GF-------IIS  106 (223)
Q Consensus        38 vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~----G~-------~V~  106 (223)
                      +|=-+++-+++..|-                    .+..|++.+|.|+|.|.-|-.+|+.+...    |.       +++
T Consensus         4 TaaV~lAgll~Al~~--------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~   63 (255)
T PF03949_consen    4 TAAVVLAGLLNALRV--------------------TGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIW   63 (255)
T ss_dssp             HHHHHHHHHHHHHHH--------------------HTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEE
T ss_pred             hHHHHHHHHHHHHHH--------------------hCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEE
Confidence            445567777777664                    34569999999999999999999999877    87       377


Q ss_pred             EEcCCC----CCC--C-----------CcccccChhhhhcCC--cEEEEeccCChhhhhccCHHHHhcCCC---CcEEEE
Q 035615          107 YNSRRK----RPS--V-----------LFPYCANVYDLAVNS--DVLVVCCALTEQTHHIINKDVMAELGK---GGMIIN  164 (223)
Q Consensus       107 ~~~~~~----~~~--~-----------~~~~~~~l~el~~~a--Div~~~~p~t~~t~~li~~~~l~~mk~---ga~lIN  164 (223)
                      .+|+..    ...  .           ......+|.|+++..  |+++=+-    ..-++|+++.++.|.+   ..++.=
T Consensus        64 lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~~~erPIIF~  139 (255)
T PF03949_consen   64 LVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAKHNERPIIFP  139 (255)
T ss_dssp             EEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHHHSSSEEEEE
T ss_pred             EEeccceEeccCccCChhhhhhhccCcccccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhccCCCCEEEE
Confidence            777652    111  0           001124899999988  9886542    2567899999999977   789998


Q ss_pred             cCCCcccCHHHHHHHHHc
Q 035615          165 VGRGALIDEKEMLQFLVQ  182 (223)
Q Consensus       165 ~arg~~vd~~al~~aL~~  182 (223)
                      .|+-..--|-.-.++.+-
T Consensus       140 LSNPt~~aE~~peda~~~  157 (255)
T PF03949_consen  140 LSNPTPKAECTPEDAYEW  157 (255)
T ss_dssp             -SSSCGGSSS-HHHHHHT
T ss_pred             CCCCCCcccCCHHHHHhh
Confidence            888766333333333333

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=95.17  E-value=0.055  Score=46.00  Aligned_cols=61  Identities=13%  Similarity=-0.009  Sum_probs=44.5

Q ss_pred             EEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------CcccccChhhhh------cC-CcEEEEeccCC
Q 035615           81 QVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV---------LFPYCANVYDLA------VN-SDVLVVCCALT  141 (223)
Q Consensus        81 ~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~~~l~el~------~~-aDiv~~~~p~t  141 (223)
                      +|.|.|. |.+|+.+++.|...|++|.+..|++....         .+....++.+.+      .. +|.|+++.|..
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~   78 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI   78 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence            4778886 99999999999999999999988775322         111234455566      45 89998887754

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PTZ00325 malate dehydrogenase; Provisional

Probab=95.16  E-value=0.073  Score=46.85  Aligned_cols=64  Identities=17%  Similarity=0.166  Sum_probs=44.7

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCC--CEEEEEcCCCCCCC--C-------ccc--c---cChhhhhcCCcEEEEec
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFG--FIISYNSRRKRPSV--L-------FPY--C---ANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~--~-------~~~--~---~~l~el~~~aDiv~~~~  138 (223)
                      -++.++|+|+|. |++|..+|..+...+  .++..+|+......  +       ...  .   .+..+.++.||+|++++
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita   84 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA   84 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence            367789999999 999999999988444  57888887321110  1       111  1   11257899999999887


Q ss_pred             c
Q 035615          139 A  139 (223)
Q Consensus       139 p  139 (223)
                      -
T Consensus        85 G   85 (321)
T PTZ00325         85 G   85 (321)
T ss_pred             C
Confidence            4

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=95.16  E-value=0.16  Score=47.56  Aligned_cols=93  Identities=12%  Similarity=0.083  Sum_probs=66.3

Q ss_pred             ccccCCCEEEEEec---ChHHHHHHHHHHhCC-CEEEEEcCCCCCCC----------C--cccccChhhhhcCCcEE--E
Q 035615           74 GFKLGGMQVGIVRL---GNIGSEVLNRLQAFG-FIISYNSRRKRPSV----------L--FPYCANVYDLAVNSDVL--V  135 (223)
Q Consensus        74 ~~~l~g~~vgIiG~---G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDiv--~  135 (223)
                      +..+.|++|+++|=   +++.++++..+..|| ++|.+..|..-...          +  +....++++.++.+|+.  .
T Consensus       169 G~~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw  248 (525)
T PRK13376        169 NFDNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIW  248 (525)
T ss_pred             CCCcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceE
Confidence            33588999999996   699999999999998 99988876443211          1  22357899999999952  2


Q ss_pred             E-------eccCC-----hh--hhhccCHHHHhcCCCCcEEEEcC
Q 035615          136 V-------CCALT-----EQ--THHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       136 ~-------~~p~t-----~~--t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      .       ..+..     ..  -...++++.++.+|++++|.-+.
T Consensus       249 ~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL  293 (525)
T PRK13376        249 YFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL  293 (525)
T ss_pred             EEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence            2       12111     01  13457899999999999998876

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=95.11  E-value=0.079  Score=45.64  Aligned_cols=61  Identities=13%  Similarity=0.103  Sum_probs=44.3

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------C-------cccccChhhhhcCCcEEEEe
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------L-------FPYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------~-------~~~~~~l~el~~~aDiv~~~  137 (223)
                      |++|.|.| .|-||+.+++.|...|++|.+..|+.....             .       ......++++++.+|+|+.+
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~   83 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHT   83 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEe
Confidence            68999999 699999999999999999987776543210             0       01123466778889988766


Q ss_pred             cc
Q 035615          138 CA  139 (223)
Q Consensus       138 ~p  139 (223)
                      ..
T Consensus        84 A~   85 (322)
T PLN02662         84 AS   85 (322)
T ss_pred             CC
Confidence            53

>PLN02214 cinnamoyl-CoA reductase

Probab=94.98  E-value=0.083  Score=46.49  Aligned_cols=64  Identities=14%  Similarity=0.112  Sum_probs=46.9

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCC------------CCc-------ccccChhhhhcCCcEEE
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPS------------VLF-------PYCANVYDLAVNSDVLV  135 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------~~~-------~~~~~l~el~~~aDiv~  135 (223)
                      .+++++|.|.|. |.||+.+++.|...|++|.+..|+....            ...       ....+++++++.+|+|+
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi   86 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF   86 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence            367899999997 9999999999999999999887754321            001       11234566788899887


Q ss_pred             Eecc
Q 035615          136 VCCA  139 (223)
Q Consensus       136 ~~~p  139 (223)
                      .+..
T Consensus        87 h~A~   90 (342)
T PLN02214         87 HTAS   90 (342)
T ss_pred             EecC
Confidence            6653

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=94.97  E-value=0.023  Score=46.92  Aligned_cols=60  Identities=15%  Similarity=0.133  Sum_probs=46.0

Q ss_pred             EEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCC-------CCc-------ccccChhhhhcCCcEEEEeccCC
Q 035615           82 VGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPS-------VLF-------PYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        82 vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------~~~-------~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      |.|+|. |.+|+.+++.|...+++|.+..|.....       .+.       ....++.+.++.+|.|++++|..
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~   75 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS   75 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence            678995 9999999999999999999888876321       111       12356777899999999999843

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=94.95  E-value=0.068  Score=47.09  Aligned_cols=36  Identities=22%  Similarity=0.138  Sum_probs=32.3

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      +++++|.|.|. |-||+.+++.|...|.+|+++++..
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~   49 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS   49 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            67899999994 9999999999999999999998743

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=94.95  E-value=0.27  Score=42.76  Aligned_cols=90  Identities=14%  Similarity=0.210  Sum_probs=67.9

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEecc
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      |+|+|+..+|= .+++.++......+|++|....|..-...              +  .....+.++.++.+|+|..-+.
T Consensus       151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW  230 (310)
T COG0078         151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW  230 (310)
T ss_pred             ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence            89999999995 57899998888999999987766542211              1  2235689999999999987663


Q ss_pred             CC--hhhh-----------hccCHHHHhcCCCCcEEEEcC
Q 035615          140 LT--EQTH-----------HIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       140 ~t--~~t~-----------~li~~~~l~~mk~ga~lIN~a  166 (223)
                      ..  ++.+           .-+|++.++.-+++++|.-|-
T Consensus       231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCL  270 (310)
T COG0078         231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCL  270 (310)
T ss_pred             ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCC
Confidence            22  2221           567889999999999999885

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=94.93  E-value=0.091  Score=46.28  Aligned_cols=94  Identities=13%  Similarity=0.144  Sum_probs=58.2

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCCC-------EEEEEcCCCCC--CC-------Cc--------ccccChhhhhcCCcEE
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFGF-------IISYNSRRKRP--SV-------LF--------PYCANVYDLAVNSDVL  134 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~--~~-------~~--------~~~~~l~el~~~aDiv  134 (223)
                      ++|+|||. |.+|..+|-.+...|.       ++..+|.....  ..       ..        ....+..+.++.||+|
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            58999999 9999999998876555       68888874332  11       00        0123445779999999


Q ss_pred             EEeccC--Ch-hhhh-cc--CH-------HHHhcCC-CCcEEEEcCCCcccCHHH
Q 035615          135 VVCCAL--TE-QTHH-II--NK-------DVMAELG-KGGMIINVGRGALIDEKE  175 (223)
Q Consensus       135 ~~~~p~--t~-~t~~-li--~~-------~~l~~mk-~ga~lIN~arg~~vd~~a  175 (223)
                      +++.-.  .+ +|+. ++  |.       +.+.... |.+++|+++  ..+|.-.
T Consensus        83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t  135 (322)
T cd01338          83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNA  135 (322)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHH
Confidence            998743  11 1221 11  11       1233334 588999986  5555444

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=94.92  E-value=0.072  Score=46.58  Aligned_cols=85  Identities=13%  Similarity=0.154  Sum_probs=56.4

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccCh-hhhhcCCcEEEEeccCChhhhhccCHH
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANV-YDLAVNSDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l-~el~~~aDiv~~~~p~t~~t~~li~~~  151 (223)
                      .|.+|.|.|.|.+|...++.++.+|++|++.++++++.+     ++....+. ++.-...|+++.+.... .   .+ ..
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~~-~~  239 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---LV-PP  239 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---HH-HH
Confidence            488999999999999999999999999988877665432     22211111 11112357666655422 1   22 45


Q ss_pred             HHhcCCCCcEEEEcCC
Q 035615          152 VMAELGKGGMIINVGR  167 (223)
Q Consensus       152 ~l~~mk~ga~lIN~ar  167 (223)
                      .++.++++..++.++.
T Consensus       240 ~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       240 ALEALDRGGVLAVAGI  255 (329)
T ss_pred             HHHhhCCCcEEEEEec
Confidence            6778888888888774

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.84  E-value=0.047  Score=51.57  Aligned_cols=64  Identities=16%  Similarity=0.201  Sum_probs=46.6

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C------cc-------cccChhhhh
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L------FP-------YCANVYDLA  128 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~------~~-------~~~~l~el~  128 (223)
                      -.|+++.|.|. |.||+.+++.|...|++|.++.|+.....              +      ..       ...++.+.+
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL  157 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL  157 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence            46889999995 99999999999999999998887643210              0      10       112344567


Q ss_pred             cCCcEEEEeccC
Q 035615          129 VNSDVLVVCCAL  140 (223)
Q Consensus       129 ~~aDiv~~~~p~  140 (223)
                      ..+|+|+.++..
T Consensus       158 ggiDiVVn~AG~  169 (576)
T PLN03209        158 GNASVVICCIGA  169 (576)
T ss_pred             cCCCEEEEcccc
Confidence            889999888643

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=94.83  E-value=0.1  Score=46.17  Aligned_cols=83  Identities=11%  Similarity=0.159  Sum_probs=51.3

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHHh--CC-CEEEEEcCCCCCCC-----C-cccccChhhh-hcCCcEEEEeccCChhhhh
Q 035615           78 GGMQVGIVRL-GNIGSEVLNRLQA--FG-FIISYNSRRKRPSV-----L-FPYCANVYDL-AVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        78 ~g~~vgIiG~-G~iG~~~a~~l~~--~G-~~V~~~~~~~~~~~-----~-~~~~~~l~el-~~~aDiv~~~~p~t~~t~~  146 (223)
                      ++.+|+|||. |-.|+.+.+.|..  +- .++..+........     + ...+.++++. +.++|++++++|... .  
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~-s--   79 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREA-S--   79 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHH-H--
Confidence            4678999996 9999999999987  43 35544432211111     1 1112344444 378999999998442 2  


Q ss_pred             ccCHHHHhcC-CCCcEEEEcC
Q 035615          147 IINKDVMAEL-GKGGMIINVG  166 (223)
Q Consensus       147 li~~~~l~~m-k~ga~lIN~a  166 (223)
                         .++...+ +.|+.+|+.|
T Consensus        80 ---~~~~~~~~~~g~~VIDlS   97 (336)
T PRK08040         80 ---AAYAEEATNAGCLVIDSS   97 (336)
T ss_pred             ---HHHHHHHHHCCCEEEECC
Confidence               2222222 5688899888

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=94.83  E-value=0.086  Score=45.92  Aligned_cols=83  Identities=19%  Similarity=0.230  Sum_probs=53.6

Q ss_pred             EEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCCC---------------cccccChhhhhcCCcEEEEeccC--Ch-h
Q 035615           84 IVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSVL---------------FPYCANVYDLAVNSDVLVVCCAL--TE-Q  143 (223)
Q Consensus        84 IiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~---------------~~~~~~l~el~~~aDiv~~~~p~--t~-~  143 (223)
                      |||.|.+|..+|..+...+.  ++..+|.......+               .....+-.+.+++||+|+++.-.  .| .
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~   80 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE   80 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence            68999999999999886665  68899986653321               01112335779999999998642  11 1


Q ss_pred             hh--------hccC--HHHHhcCCCCcEEEEcC
Q 035615          144 TH--------HIIN--KDVMAELGKGGMIINVG  166 (223)
Q Consensus       144 t~--------~li~--~~~l~~mk~ga~lIN~a  166 (223)
                      ++        .++.  .+.+....|.+++|+++
T Consensus        81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs  113 (299)
T TIGR01771        81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT  113 (299)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence            12        1111  12344457889999987

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK06398 aldose dehydrogenase; Validated

Probab=94.82  E-value=0.17  Score=42.49  Aligned_cols=38  Identities=21%  Similarity=0.148  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      +++||++.|.|. |.||+.+|+.|...|++|+..+|+..
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~   41 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP   41 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            478999999995 79999999999999999998887654

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=94.79  E-value=0.12  Score=45.58  Aligned_cols=60  Identities=13%  Similarity=0.104  Sum_probs=43.3

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCCC-------EEEEEcCCCCC--CCC-------c--------ccccChhhhhcCCcEE
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFGF-------IISYNSRRKRP--SVL-------F--------PYCANVYDLAVNSDVL  134 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~--~~~-------~--------~~~~~l~el~~~aDiv  134 (223)
                      .+|+|||. |.+|..+|-.|...|.       ++..+|.....  ..+       .        ....+..+.+++||+|
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV   83 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA   83 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence            47999998 9999999999886664       78888875421  110       0        0113455789999999


Q ss_pred             EEecc
Q 035615          135 VVCCA  139 (223)
Q Consensus       135 ~~~~p  139 (223)
                      +++.-
T Consensus        84 VitAG   88 (323)
T TIGR01759        84 LLVGA   88 (323)
T ss_pred             EEeCC
Confidence            99874

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=94.74  E-value=0.086  Score=47.02  Aligned_cols=61  Identities=20%  Similarity=0.213  Sum_probs=43.3

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCC-C----Ccc-------cccChhhhhcCCcEEEEec
Q 035615           78 GGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPS-V----LFP-------YCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        78 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~----~~~-------~~~~l~el~~~aDiv~~~~  138 (223)
                      .+|+|.|.|. |-||+.+++.|...|++|.+.+|..... .    ...       ...++.++++++|+|+-+.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   93 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA   93 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence            4789999996 9999999999999999999988753211 0    001       1122344567889887665

>PRK12861 malic enzyme; Reviewed

Probab=94.73  E-value=0.25  Score=48.29  Aligned_cols=93  Identities=13%  Similarity=0.193  Sum_probs=72.0

Q ss_pred             CccccCCCEEEEEecChHHHHHHHHHHhCCC---EEEEEcCCC-----CC--CC----Cc---ccccChhhhhcCCcEEE
Q 035615           73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGF---IISYNSRRK-----RP--SV----LF---PYCANVYDLAVNSDVLV  135 (223)
Q Consensus        73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~---~V~~~~~~~-----~~--~~----~~---~~~~~l~el~~~aDiv~  135 (223)
                      .++.|+..+|.|.|.|.-|..+++.+...|.   +++.+|+..     +.  ..    .+   ....+|.|+++.+|+++
T Consensus       183 ~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advli  262 (764)
T PRK12861        183 VGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVFL  262 (764)
T ss_pred             hCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEEE
Confidence            3567899999999999999999999999998   688888543     11  11    01   12358999999999775


Q ss_pred             EeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcc
Q 035615          136 VCCALTEQTHHIINKDVMAELGKGGMIINVGRGAL  170 (223)
Q Consensus       136 ~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~  170 (223)
                      = +.    .-++|+++.++.|.+..++.=.|.-..
T Consensus       263 G-~S----~~g~ft~e~v~~Ma~~PIIFaLsNPtp  292 (764)
T PRK12861        263 G-LS----AGGVLKAEMLKAMAARPLILALANPTP  292 (764)
T ss_pred             E-cC----CCCCCCHHHHHHhccCCEEEECCCCCc
Confidence            3 42    258999999999999999998887664

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=94.71  E-value=0.077  Score=45.62  Aligned_cols=60  Identities=20%  Similarity=0.116  Sum_probs=44.2

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccc-------cccChhhhhcCCcEEEEecc
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFP-------YCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~-------~~~~l~el~~~aDiv~~~~p  139 (223)
                      +++.|.| .|.||+.+++.|...|++|.+.+|++....     +..       ...++.++++.+|+|+.+..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            4789998 499999999999999999999888654321     111       12345667888998877654

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=94.71  E-value=0.035  Score=55.87  Aligned_cols=90  Identities=12%  Similarity=0.183  Sum_probs=61.9

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEE-----------------------EE----cCCCC---CC--CCc------
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIIS-----------------------YN----SRRKR---PS--VLF------  118 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-----------------------~~----~~~~~---~~--~~~------  118 (223)
                      +.-.+|.|+|.|++|+..++.+..+|++.+                       .|    .+...   ..  ..+      
T Consensus       201 v~P~~vVi~G~G~Vg~gA~~i~~~lg~~~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~y~  280 (1042)
T PLN02819        201 ICPLVFVFTGSGNVSQGAQEIFKLLPHTFVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYY  280 (1042)
T ss_pred             CCCeEEEEeCCchHHHHHHHHHhhcCCCccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhhhc
Confidence            446789999999999999999988865410                       00    00000   00  000      


Q ss_pred             ----ccccC-hhhhhcCCcEEEEeccCChhhhhccCHH-HHhcCCCCc----EEEEcC
Q 035615          119 ----PYCAN-VYDLAVNSDVLVVCCALTEQTHHIINKD-VMAELGKGG----MIINVG  166 (223)
Q Consensus       119 ----~~~~~-l~el~~~aDiv~~~~p~t~~t~~li~~~-~l~~mk~ga----~lIN~a  166 (223)
                          .+... +++.++.+|+++.++-..+..-.++.++ ..+.||+|.    +|+|++
T Consensus       281 ~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs  338 (1042)
T PLN02819        281 AHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT  338 (1042)
T ss_pred             cCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence                00112 3568899999999997777777888888 778899998    888876

>PRK08265 short chain dehydrogenase; Provisional

Probab=94.70  E-value=0.16  Score=42.59  Aligned_cols=38  Identities=21%  Similarity=0.114  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      +++++++.|.|. |.||+.+++.|...|++|++.+|+..
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD   41 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999995 99999999999999999999988753

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=94.69  E-value=0.077  Score=47.78  Aligned_cols=39  Identities=26%  Similarity=0.279  Sum_probs=34.0

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      +....+++|.|+|. |.||+.+++.|...|++|..++|+.
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~   94 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK   94 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence            34567899999995 9999999999999999999888765

>PRK05884 short chain dehydrogenase; Provisional

Probab=94.68  E-value=0.08  Score=43.54  Aligned_cols=33  Identities=12%  Similarity=0.232  Sum_probs=28.7

Q ss_pred             EEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           81 QVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        81 ~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      ++.|.|. |.||+.+++.+...|++|+..+|+.+
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~   35 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRD   35 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            6788885 89999999999999999998887653

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=94.68  E-value=0.094  Score=49.26  Aligned_cols=81  Identities=16%  Similarity=0.278  Sum_probs=63.2

Q ss_pred             ccCCCEEEEEecCh-HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615           76 KLGGMQVGIVRLGN-IGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA  154 (223)
Q Consensus        76 ~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~  154 (223)
                      .+.|++..++|-.. +|..++..|+.....|..+...         ..++.|.+.++|+|+.++-    .-+++-.++  
T Consensus       159 ~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK---------T~~lae~v~~ADIvIvAiG----~PefVKgdW--  223 (935)
T KOG4230|consen  159 FVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK---------TRNLAEKVSRADIVIVAIG----QPEFVKGDW--  223 (935)
T ss_pred             ccccceeEEEecccccCChHHHHHHhcCceEEEecCC---------CccHHHHhccCCEEEEEcC----Ccceeeccc--
Confidence            57899999999755 5899999999988999877432         3578999999999999985    234454554  


Q ss_pred             cCCCCcEEEEcCCCcccC
Q 035615          155 ELGKGGMIINVGRGALID  172 (223)
Q Consensus       155 ~mk~ga~lIN~arg~~vd  172 (223)
                       +|||+++|+++--.+-|
T Consensus       224 -iKpGavVIDvGINyvpD  240 (935)
T KOG4230|consen  224 -IKPGAVVIDVGINYVPD  240 (935)
T ss_pred             -ccCCcEEEEccccccCC
Confidence             58999999998655444

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=94.68  E-value=0.078  Score=44.15  Aligned_cols=38  Identities=21%  Similarity=0.227  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .++||++.|.|. |.||+.+++.|...|++|+..+|+..
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~   45 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA   45 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999995 99999999999999999999888653

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.66  E-value=0.16  Score=45.16  Aligned_cols=81  Identities=19%  Similarity=0.361  Sum_probs=49.2

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHh-CCCE---EEEE-cCCC-CCCCCc----ccc--cChhhhhcCCcEEEEeccCChhhh
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQA-FGFI---ISYN-SRRK-RPSVLF----PYC--ANVYDLAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~-~G~~---V~~~-~~~~-~~~~~~----~~~--~~l~el~~~aDiv~~~~p~t~~t~  145 (223)
                      +.+|||||. |..|+.+.+.|.. -.++   +..+ +... .+...+    ..+  .+.++ ++++|++++++|.. ...
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~s~   82 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-VSR   82 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-HHH
Confidence            568999996 9999999999984 5665   4333 3221 111111    111  23333 57899999999844 222


Q ss_pred             hccCHHHHhc-CCCCcEEEEcC
Q 035615          146 HIINKDVMAE-LGKGGMIINVG  166 (223)
Q Consensus       146 ~li~~~~l~~-mk~ga~lIN~a  166 (223)
                      .+     ... .+.|+.+|+.|
T Consensus        83 ~~-----~~~~~~~G~~VID~S   99 (347)
T PRK06728         83 QF-----VNQAVSSGAIVIDNT   99 (347)
T ss_pred             HH-----HHHHHHCCCEEEECc
Confidence            22     222 25678888877

>PRK06523 short chain dehydrogenase; Provisional

Probab=94.65  E-value=0.26  Score=40.98  Aligned_cols=39  Identities=21%  Similarity=0.302  Sum_probs=34.4

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .+++|+++.|.|. |.||+.+++.|...|++|+..+|+..
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~   44 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP   44 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence            4588999999995 89999999999999999998887653

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=94.62  E-value=0.28  Score=45.06  Aligned_cols=96  Identities=15%  Similarity=0.184  Sum_probs=60.9

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhC-------CC--EEEEEcCCCCCCCC--------c------cc-ccChhhhhcCCcEE
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAF-------GF--IISYNSRRKRPSVL--------F------PY-CANVYDLAVNSDVL  134 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~-------G~--~V~~~~~~~~~~~~--------~------~~-~~~l~el~~~aDiv  134 (223)
                      .+|+|||. |.+|..+|-.+...       |.  +++.+|+..+...+        .      .. ..+-.+.+++||+|
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV  180 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA  180 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence            58999999 99999999988755       44  67888887665431        0      01 13445779999999


Q ss_pred             EEeccC--Chh-hh--------hccC--HHHHhc-CCCCcEEEEcCCCcccCHHHHH
Q 035615          135 VVCCAL--TEQ-TH--------HIIN--KDVMAE-LGKGGMIINVGRGALIDEKEML  177 (223)
Q Consensus       135 ~~~~p~--t~~-t~--------~li~--~~~l~~-mk~ga~lIN~arg~~vd~~al~  177 (223)
                      +++.-.  .+. ++        .++.  .+.+.. ..+.+++|.++  ..+|.-..+
T Consensus       181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v  235 (444)
T PLN00112        181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALI  235 (444)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHH
Confidence            998732  221 11        1121  123344 46788999887  445554443

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.61  E-value=0.06  Score=49.65  Aligned_cols=109  Identities=11%  Similarity=0.062  Sum_probs=67.9

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------Ccccc-cChhhhhcCCcEEEEec---cC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------LFPYC-ANVYDLAVNSDVLVVCC---AL  140 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~~~-~~l~el~~~aDiv~~~~---p~  140 (223)
                      ..+.+++|.|||.|.+|.++|+.|+..|++|.++|+......          +.... ..-.+....+|+|+++.   |.
T Consensus        12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~   91 (480)
T PRK01438         12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPD   91 (480)
T ss_pred             cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCC
Confidence            457799999999999999999999999999999986542110          11111 01111345689998876   33


Q ss_pred             Chh-----hh--hccCH-HHH-hcCCC----CcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          141 TEQ-----TH--HIINK-DVM-AELGK----GGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       141 t~~-----t~--~li~~-~~l-~~mk~----ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      ++.     ..  .++++ +++ ..+.+    ..+-|--+.|+.--..-+...|+..
T Consensus        92 ~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~  147 (480)
T PRK01438         92 APLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAA  147 (480)
T ss_pred             CHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHc
Confidence            332     11  12332 232 33322    2456666678887777777778763

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=94.57  E-value=0.11  Score=45.30  Aligned_cols=85  Identities=20%  Similarity=0.249  Sum_probs=56.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc---cc--C-hhhhhcCCcEEEEeccCChhhhh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY---CA--N-VYDLAVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~---~~--~-l~el~~~aDiv~~~~p~t~~t~~  146 (223)
                      .|.++.|.|.|.+|+.+++.++.+|++|++.+++.+...     +...   ..  + ..+.-...|+++.+.+...    
T Consensus       169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~----  244 (337)
T cd05283         169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH----  244 (337)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc----
Confidence            478999999999999999999999999988877653321     1111   01  1 1122345788887776321    


Q ss_pred             ccCHHHHhcCCCCcEEEEcCC
Q 035615          147 IINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       147 li~~~~l~~mk~ga~lIN~ar  167 (223)
                       ...+.++.++++..+++++.
T Consensus       245 -~~~~~~~~l~~~G~~v~~g~  264 (337)
T cd05283         245 -DLDPYLSLLKPGGTLVLVGA  264 (337)
T ss_pred             -hHHHHHHHhcCCCEEEEEec
Confidence             12445666777777777764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=94.56  E-value=0.17  Score=42.55  Aligned_cols=31  Identities=35%  Similarity=0.506  Sum_probs=26.0

Q ss_pred             EEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR  111 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  111 (223)
                      +|.|||.|.+|..+++.|...|+ ++.++|..
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D   32 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMD   32 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            48999999999999999998888 46666543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=94.55  E-value=0.21  Score=43.83  Aligned_cols=83  Identities=20%  Similarity=0.163  Sum_probs=53.2

Q ss_pred             EEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCCCCC-------------C-----------------c--c----cccC
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKRPSV-------------L-----------------F--P----YCAN  123 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~-------------~-----------------~--~----~~~~  123 (223)
                      +|.|||.|.+|..+++.|...|.. +..+|...-...             +                 .  .    ...+
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~   80 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD   80 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence            589999999999999999988984 777765432110             0                 0  0    0111


Q ss_pred             ---hhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          124 ---VYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       124 ---l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                         ..+.+++.|+|+.++ .+.+.+..+++.....   +.-+|+.+.
T Consensus        81 ~~~~~~f~~~~DvVv~a~-Dn~~ar~~in~~c~~~---~ip~I~~gt  123 (312)
T cd01489          81 PDFNVEFFKQFDLVFNAL-DNLAARRHVNKMCLAA---DVPLIESGT  123 (312)
T ss_pred             ccchHHHHhcCCEEEECC-CCHHHHHHHHHHHHHC---CCCEEEEec
Confidence               236778889888877 4556677776655443   334666553

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=94.53  E-value=0.084  Score=45.96  Aligned_cols=85  Identities=20%  Similarity=0.227  Sum_probs=56.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCCCCC-----Cccc---cc--Ch---hhhhc--CCcEEEEeccCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKRPSV-----LFPY---CA--NV---YDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~-----~~~~---~~--~l---~el~~--~aDiv~~~~p~t  141 (223)
                      .|.+|.|+|.|.+|...++.++.+|++ |++.+++.++..     ++..   ..  +.   .++..  ..|+++-+....
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~  242 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT  242 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence            489999999999999999999999998 888877654321     1111   11  11   22222  478888776422


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                       ..   + ...+..++++..++.++.
T Consensus       243 -~~---~-~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         243 -AA---R-RLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             -HH---H-HHHHHHhhcCCEEEEEcC
Confidence             11   1 345667788888887764

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.53  E-value=0.088  Score=43.41  Aligned_cols=38  Identities=21%  Similarity=0.305  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      ++.++++.|+|. |.||+.+++.|...|++|++.+|++.
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~   40 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE   40 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            367899999995 99999999999999999999998864

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=94.51  E-value=0.15  Score=44.22  Aligned_cols=62  Identities=16%  Similarity=0.115  Sum_probs=44.2

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------------CcccccChhhhhcCCcEEEE
Q 035615           78 GGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------------LFPYCANVYDLAVNSDVLVV  136 (223)
Q Consensus        78 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------------~~~~~~~l~el~~~aDiv~~  136 (223)
                      .||++.|.| .|-||+.+++.|...|++|++..|+.....                    +.....+++++++..|+|+.
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih   83 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH   83 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence            378999999 499999999999999999987665543210                    01112345667788998877


Q ss_pred             ecc
Q 035615          137 CCA  139 (223)
Q Consensus       137 ~~p  139 (223)
                      +..
T Consensus        84 ~A~   86 (325)
T PLN02989         84 TAS   86 (325)
T ss_pred             eCC
Confidence            663

>cd00704 MDH Malate dehydrogenase

Probab=94.49  E-value=0.14  Score=45.09  Aligned_cols=94  Identities=15%  Similarity=0.176  Sum_probs=58.2

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCCC-------EEEEEcCCC--CCCCC-------c--------ccccChhhhhcCCcEE
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFGF-------IISYNSRRK--RPSVL-------F--------PYCANVYDLAVNSDVL  134 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~--~~~~~-------~--------~~~~~l~el~~~aDiv  134 (223)
                      .+|+|+|. |.+|+.++..|...|.       ++..+|+..  ....+       .        ....+..+.++.||+|
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV   80 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA   80 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence            37999999 9999999998876443       488888765  32221       0        0013566889999999


Q ss_pred             EEeccC--Ch-hhhh-cc--C----H---HHHhcC-CCCcEEEEcCCCcccCHHH
Q 035615          135 VVCCAL--TE-QTHH-II--N----K---DVMAEL-GKGGMIINVGRGALIDEKE  175 (223)
Q Consensus       135 ~~~~p~--t~-~t~~-li--~----~---~~l~~m-k~ga~lIN~arg~~vd~~a  175 (223)
                      +++.-.  .+ +++. ++  |    +   +.++.. +|++++|.++  ..+|.-.
T Consensus        81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t  133 (323)
T cd00704          81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNA  133 (323)
T ss_pred             EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHH
Confidence            988632  22 1221 11  1    1   233344 5788888885  4455443

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08628 short chain dehydrogenase; Provisional

Probab=94.48  E-value=0.13  Score=42.77  Aligned_cols=38  Identities=24%  Similarity=0.180  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      +++|+++.|.| .|.||+.+|+.|...|++|++.+|++.
T Consensus         4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~   42 (258)
T PRK08628          4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP   42 (258)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh
Confidence            48899999999 589999999999999999988887654

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=94.47  E-value=0.13  Score=45.24  Aligned_cols=87  Identities=14%  Similarity=0.157  Sum_probs=55.0

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCC-------CEEEEEcCCCCC--CCC----cc-----------cccChhhhhcCCcEE
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFG-------FIISYNSRRKRP--SVL----FP-----------YCANVYDLAVNSDVL  134 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G-------~~V~~~~~~~~~--~~~----~~-----------~~~~l~el~~~aDiv  134 (223)
                      .+|+|+|. |.+|+.++..|...+       .++..+|+.+..  ..+    ..           ...++.+.++.||+|
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV   82 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA   82 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence            36999998 999999999987644       478888885432  111    00           124556889999999


Q ss_pred             EEeccCCh---hhh-hcc--CH-------HHHhcC-CCCcEEEEcC
Q 035615          135 VVCCALTE---QTH-HII--NK-------DVMAEL-GKGGMIINVG  166 (223)
Q Consensus       135 ~~~~p~t~---~t~-~li--~~-------~~l~~m-k~ga~lIN~a  166 (223)
                      +.+.-...   .++ .++  |.       +.+... ++++++|.++
T Consensus        83 I~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs  128 (325)
T cd01336          83 ILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG  128 (325)
T ss_pred             EEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence            88763321   111 111  21       123333 5688888887

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=94.46  E-value=0.13  Score=43.26  Aligned_cols=36  Identities=17%  Similarity=0.187  Sum_probs=30.7

Q ss_pred             ccCCCEEEEEec---ChHHHHHHHHHHhCCCEEEEEcCC
Q 035615           76 KLGGMQVGIVRL---GNIGSEVLNRLQAFGFIISYNSRR  111 (223)
Q Consensus        76 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~  111 (223)
                      ++.||++.|.|.   +.||+++|+.+...|++|+...+.
T Consensus         3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~   41 (258)
T PRK07370          3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLP   41 (258)
T ss_pred             ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence            367999999997   489999999999999998766543

>PLN02427 UDP-apiose/xylose synthase

Probab=94.46  E-value=0.097  Score=46.71  Aligned_cols=65  Identities=12%  Similarity=0.062  Sum_probs=46.2

Q ss_pred             ccccCCCEEEEEe-cChHHHHHHHHHHhC-CCEEEEEcCCCCCCC------------Ccc-------cccChhhhhcCCc
Q 035615           74 GFKLGGMQVGIVR-LGNIGSEVLNRLQAF-GFIISYNSRRKRPSV------------LFP-------YCANVYDLAVNSD  132 (223)
Q Consensus        74 ~~~l~g~~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~------------~~~-------~~~~l~el~~~aD  132 (223)
                      ++.++.++|.|.| .|-||+.+++.|... |++|+++++......            ...       ....+.++++.+|
T Consensus         9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d   88 (386)
T PLN02427          9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD   88 (386)
T ss_pred             CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence            5567788999999 599999999999987 589998887543210            011       1223556778899


Q ss_pred             EEEEec
Q 035615          133 VLVVCC  138 (223)
Q Consensus       133 iv~~~~  138 (223)
                      +|+-+.
T Consensus        89 ~ViHlA   94 (386)
T PLN02427         89 LTINLA   94 (386)
T ss_pred             EEEEcc
Confidence            876554

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=94.42  E-value=0.18  Score=44.85  Aligned_cols=81  Identities=12%  Similarity=0.194  Sum_probs=48.4

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCC-CEEEEEcCCCCCC----C---Cc----------c--c--ccChhhhhcCCcEEEE
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFG-FIISYNSRRKRPS----V---LF----------P--Y--CANVYDLAVNSDVLVV  136 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~----~---~~----------~--~--~~~l~el~~~aDiv~~  136 (223)
                      .+|+|+| .|.+|+.+++.|..+. +++.++.++....    .   ..          .  .  ..+.+ .+.++|+|+.
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~DvVf~   82 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPE-AVDDVDIVFS   82 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHH-HhcCCCEEEE
Confidence            6899998 8999999999998764 4776662222111    0   01          0  0  11333 3478999999


Q ss_pred             eccCChhhhhccCHHHHhcCCCCcEEEEcC
Q 035615          137 CCALTEQTHHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       137 ~~p~t~~t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      ++|.... ..+.  +.+  .+.|..+|+.+
T Consensus        83 a~p~~~s-~~~~--~~~--~~~G~~vIDls  107 (349)
T PRK08664         83 ALPSDVA-GEVE--EEF--AKAGKPVFSNA  107 (349)
T ss_pred             eCChhHH-HHHH--HHH--HHCCCEEEECC
Confidence            9985422 2222  112  14567667665

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=94.41  E-value=0.093  Score=46.73  Aligned_cols=57  Identities=18%  Similarity=0.156  Sum_probs=41.1

Q ss_pred             EEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cc--ccccC---hhhhhc--CCcEEEEe
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LF--PYCAN---VYDLAV--NSDVLVVC  137 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~--~~~~~---l~el~~--~aDiv~~~  137 (223)
                      +|+|||-|..|..+++.++.+|++|+++++.+....     ..  ..+.+   +.++++  ++|.|+..
T Consensus         1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~   69 (380)
T TIGR01142         1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPE   69 (380)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEec
Confidence            589999999999999999999999999988764321     00  01233   444555  68888654

This enzyme is an alternative to PurN (TIGR00639)

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=94.39  E-value=0.087  Score=44.06  Aligned_cols=66  Identities=15%  Similarity=0.231  Sum_probs=46.3

Q ss_pred             cccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCC-------CCccc----c----cChhhhh-cCCcEEEEe
Q 035615           75 FKLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPS-------VLFPY----C----ANVYDLA-VNSDVLVVC  137 (223)
Q Consensus        75 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------~~~~~----~----~~l~el~-~~aDiv~~~  137 (223)
                      ....+++|.|+| .|.||+.+++.|...|++|++..|+....       ..+..    .    .++.+.+ ...|+|+.+
T Consensus        13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~   92 (251)
T PLN00141         13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICA   92 (251)
T ss_pred             ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEEC
Confidence            456789999999 59999999999999999998877654321       01110    1    1233445 579999977


Q ss_pred             ccC
Q 035615          138 CAL  140 (223)
Q Consensus       138 ~p~  140 (223)
                      .+.
T Consensus        93 ~g~   95 (251)
T PLN00141         93 TGF   95 (251)
T ss_pred             CCC
Confidence            654

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=94.38  E-value=0.11  Score=46.03  Aligned_cols=81  Identities=15%  Similarity=0.175  Sum_probs=48.8

Q ss_pred             EEEEEe-cChHHHHHHHHHHhCCCE---EEEEcCCCCCCC-----Cc-ccccCh-hhhhcCCcEEEEeccCChhhhhccC
Q 035615           81 QVGIVR-LGNIGSEVLNRLQAFGFI---ISYNSRRKRPSV-----LF-PYCANV-YDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        81 ~vgIiG-~G~iG~~~a~~l~~~G~~---V~~~~~~~~~~~-----~~-~~~~~l-~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      +|+|+| .|.+|+.+++.|...++.   +.++.+......     +. ....++ .+.+..+|++++++|.. .+..+. 
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a-   78 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFA-   78 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHH-
Confidence            589999 699999999999886665   333433322211     10 011122 23458899999999854 222221 


Q ss_pred             HHHHhcCCCCcEEEEcC
Q 035615          150 KDVMAELGKGGMIINVG  166 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~a  166 (223)
                      .+   .++.|+++|+.+
T Consensus        79 ~~---~~~~G~~VID~s   92 (339)
T TIGR01296        79 PK---AAKCGAIVIDNT   92 (339)
T ss_pred             HH---HHHCCCEEEECC
Confidence            11   235678888877

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=94.33  E-value=0.059  Score=48.98  Aligned_cols=30  Identities=23%  Similarity=0.286  Sum_probs=26.0

Q ss_pred             CEEEEEecChHHHHHHHHHHh-CCCEEEEEc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQA-FGFIISYNS  109 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~~~~  109 (223)
                      .+|||.|||+||+.+++.+.. ++++|++++
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaIN  116 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVN  116 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEec
Confidence            499999999999999999875 789987743

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.32  E-value=0.24  Score=41.52  Aligned_cols=38  Identities=16%  Similarity=0.203  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEecC---hHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           75 FKLGGMQVGIVRLG---NIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        75 ~~l~g~~vgIiG~G---~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      ..++||++.|.|.+   .||+++|+.|...|++|+..+|+.
T Consensus         6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~   46 (258)
T PRK07533          6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND   46 (258)
T ss_pred             cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence            34789999999975   799999999999999998877764

>PRK12937 short chain dehydrogenase; Provisional

Probab=94.30  E-value=0.2  Score=41.10  Aligned_cols=35  Identities=26%  Similarity=0.328  Sum_probs=30.4

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCC
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRR  111 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~  111 (223)
                      +.++++.|.|. |.||+.+|+.|...|++|+...++
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~   38 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG   38 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence            67899999994 999999999999999998766543

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=94.29  E-value=0.49  Score=41.91  Aligned_cols=89  Identities=11%  Similarity=0.052  Sum_probs=60.6

Q ss_pred             c-CCCEEEEEecC-------hHHHHHHHHHHhCCCEEEEEcC-CCCCCC--------------C--cccccChhhhhcCC
Q 035615           77 L-GGMQVGIVRLG-------NIGSEVLNRLQAFGFIISYNSR-RKRPSV--------------L--FPYCANVYDLAVNS  131 (223)
Q Consensus        77 l-~g~~vgIiG~G-------~iG~~~a~~l~~~G~~V~~~~~-~~~~~~--------------~--~~~~~~l~el~~~a  131 (223)
                      + .|+||+|++.|       ++.++++..+..+|++|.+..| ..-...              +  +....++++.++.+
T Consensus       166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a  245 (335)
T PRK04523        166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA  245 (335)
T ss_pred             ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            6 79999887643       7888999999999999998887 322110              1  22357889999999


Q ss_pred             cEEEEeccCC-----h-----h-----hhhccCHHHHhcCCCCcEEEEcC
Q 035615          132 DVLVVCCALT-----E-----Q-----THHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       132 Div~~~~p~t-----~-----~-----t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      |+|..-.=..     +     +     ....++++.++..+ +++|.-+.
T Consensus       246 Dvvy~~~w~~~~~~~~~~~~~~~~~~~~~y~v~~~ll~~a~-~~i~mHcL  294 (335)
T PRK04523        246 DVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTN-NGVFSHCL  294 (335)
T ss_pred             CEEEeceeeccccCCcccccHHHHHhCcCCcCCHHHHhCCC-CCEEECCC
Confidence            9998754111     0     0     12446777777654 67777665

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=94.25  E-value=0.22  Score=43.20  Aligned_cols=88  Identities=15%  Similarity=0.154  Sum_probs=54.6

Q ss_pred             EEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------------C-----------------cc------cc-c
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------------L-----------------FP------YC-A  122 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~-----------------~~------~~-~  122 (223)
                      +|.|||.|.+|..+++.|...|+ ++.++|...-...             +                 ..      .. .
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~   80 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD   80 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence            58999999999999999998888 4667664321100             0                 00      00 1


Q ss_pred             ChhhhhcCCcEEEEeccCChhhhhccCHHHHhcC-----CCCcEEEEcCCCc
Q 035615          123 NVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL-----GKGGMIINVGRGA  169 (223)
Q Consensus       123 ~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~m-----k~ga~lIN~arg~  169 (223)
                      ..++++++.|+|+.++- +.+++..+++......     +.+.-+|..+..+
T Consensus        81 ~~~~f~~~fdvVi~alD-n~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G  131 (291)
T cd01488          81 KDEEFYRQFNIIICGLD-SIEARRWINGTLVSLLLYEDPESIIPLIDGGTEG  131 (291)
T ss_pred             hhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhccccccccCccEEEEEEcc
Confidence            12467788898888764 4566767766554433     1234466665443

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=94.25  E-value=0.22  Score=44.57  Aligned_cols=84  Identities=17%  Similarity=0.298  Sum_probs=51.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC------CCcccc---cC---hhhhhcCCcEEEEeccCChhhh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS------VLFPYC---AN---VYDLAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~---~~---l~el~~~aDiv~~~~p~t~~t~  145 (223)
                      .|.+|.|.|.|.+|...++.++.+|.+|++.+++.+..      .++...   .+   +.+.....|+++-++.....  
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~--  255 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHA--  255 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHH--
Confidence            58999999999999999999999999988876553221      122111   11   22233346888877642211  


Q ss_pred             hccCHHHHhcCCCCcEEEEcC
Q 035615          146 HIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~a  166 (223)
                        + ...++.++++..++.++
T Consensus       256 --~-~~~~~~l~~~G~iv~vG  273 (375)
T PLN02178        256 --L-LPLFSLLKVSGKLVALG  273 (375)
T ss_pred             --H-HHHHHhhcCCCEEEEEc
Confidence              1 23344555666665554

>PRK08862 short chain dehydrogenase; Provisional

Probab=94.21  E-value=0.092  Score=43.46  Aligned_cols=38  Identities=8%  Similarity=0.149  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      +++||++.|.|. +.||+++++.|...|++|+..+|+..
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS   40 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            478999999997 55999999999999999999888754

>PRK05442 malate dehydrogenase; Provisional

Probab=94.19  E-value=0.17  Score=44.66  Aligned_cols=94  Identities=15%  Similarity=0.154  Sum_probs=56.6

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCCC-------EEEEEcCCCCC--CCC-------c--------ccccChhhhhcCCcEE
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFGF-------IISYNSRRKRP--SVL-------F--------PYCANVYDLAVNSDVL  134 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~--~~~-------~--------~~~~~l~el~~~aDiv  134 (223)
                      ++|+|||. |.+|..+|-.+...|.       ++..+|.....  ..+       .        ....+..+.++.||+|
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV   84 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA   84 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999988765433       68888875431  110       0        0123445788999999


Q ss_pred             EEeccC--Ch-hhhh-cc--CH----H---HHhc-CCCCcEEEEcCCCcccCHHH
Q 035615          135 VVCCAL--TE-QTHH-II--NK----D---VMAE-LGKGGMIINVGRGALIDEKE  175 (223)
Q Consensus       135 ~~~~p~--t~-~t~~-li--~~----~---~l~~-mk~ga~lIN~arg~~vd~~a  175 (223)
                      +++.-.  .+ +++. ++  |.    +   .+.. -++.+++|.++  ..+|.-.
T Consensus        85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t  137 (326)
T PRK05442         85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNA  137 (326)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHH
Confidence            998642  11 1221 11  11    1   2222 33688999987  4444433

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=94.14  E-value=0.14  Score=43.22  Aligned_cols=58  Identities=16%  Similarity=0.111  Sum_probs=41.7

Q ss_pred             EEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcc-----c--ccChhhhhcCCcEEEEecc
Q 035615           82 VGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFP-----Y--CANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        82 vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~-----~--~~~l~el~~~aDiv~~~~p  139 (223)
                      |.|.| .|.||+.+++.|...|++|++.+|++.......     .  .....+.+..+|+|+.+..
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~   66 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG   66 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence            35676 699999999999999999999998765432111     0  1234456788999877764

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK14852 hypothetical protein; Provisional

Probab=94.13  E-value=0.15  Score=50.97  Aligned_cols=36  Identities=25%  Similarity=0.260  Sum_probs=31.0

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSR  110 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~  110 (223)
                      ..|+.++|+|||+|.+|..+++.|...|. ++...|.
T Consensus       328 ~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~  364 (989)
T PRK14852        328 RRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADF  364 (989)
T ss_pred             HHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence            45899999999999999999999999998 4656553

>PRK06197 short chain dehydrogenase; Provisional

Probab=94.12  E-value=0.061  Score=46.33  Aligned_cols=39  Identities=18%  Similarity=0.116  Sum_probs=34.3

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .++.||++.|.|. |.||+.+|+.|...|++|+..+|+..
T Consensus        12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~   51 (306)
T PRK06197         12 PDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLD   51 (306)
T ss_pred             ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4689999999995 99999999999999999988887643

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=94.08  E-value=0.11  Score=45.74  Aligned_cols=65  Identities=15%  Similarity=0.114  Sum_probs=46.1

Q ss_pred             ccccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------Ccc-------cccChhhhhcCCcEEE
Q 035615           74 GFKLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------LFP-------YCANVYDLAVNSDVLV  135 (223)
Q Consensus        74 ~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~-------~~~~l~el~~~aDiv~  135 (223)
                      +++-.+++|.|.| .|-||+.+++.|...|++|++.+|......          ...       ....++++++..|+|+
T Consensus         5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   84 (353)
T PLN02896          5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF   84 (353)
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence            4667899999999 599999999999999999988776543210          010       1123456677789776


Q ss_pred             Eec
Q 035615          136 VCC  138 (223)
Q Consensus       136 ~~~  138 (223)
                      -+.
T Consensus        85 h~A   87 (353)
T PLN02896         85 HVA   87 (353)
T ss_pred             ECC
Confidence            555

>PRK05865 hypothetical protein; Provisional

Probab=94.07  E-value=0.32  Score=48.26  Aligned_cols=90  Identities=20%  Similarity=0.312  Sum_probs=56.1

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC--Cc-------ccccChhhhhcCCcEEEEeccCChhhh--hc
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV--LF-------PYCANVYDLAVNSDVLVVCCALTEQTH--HI  147 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--~~-------~~~~~l~el~~~aDiv~~~~p~t~~t~--~l  147 (223)
                      ++|.|.|. |.||+.+++.|...|++|++++|+.....  ..       ....++.++++.+|+|+.+........  ++
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~~~~vNv   80 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSSADFIAADIRDATAVESAMTGADVVAHCAWVRGRNDHINI   80 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhcccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccchHHHHH
Confidence            47899995 99999999999999999999887642211  11       112345567888999887764321100  00


Q ss_pred             c-CHHHHhcCCC-C-cEEEEcCCCc
Q 035615          148 I-NKDVMAELGK-G-GMIINVGRGA  169 (223)
Q Consensus       148 i-~~~~l~~mk~-g-a~lIN~arg~  169 (223)
                      . ....++.|+. + ..||.+|...
T Consensus        81 ~GT~nLLeAa~~~gvkr~V~iSS~~  105 (854)
T PRK05865         81 DGTANVLKAMAETGTGRIVFTSSGH  105 (854)
T ss_pred             HHHHHHHHHHHHcCCCeEEEECCcH
Confidence            0 1223444433 2 3688888765

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=94.06  E-value=0.11  Score=43.86  Aligned_cols=56  Identities=18%  Similarity=0.181  Sum_probs=41.6

Q ss_pred             EEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCC--cEEEEecc
Q 035615           81 QVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNS--DVLVVCCA  139 (223)
Q Consensus        81 ~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~a--Div~~~~p  139 (223)
                      +|.|+| .|.||+.+++.|...|++|.+.+|...   ......++.++++..  |+|+.+..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~---d~~~~~~~~~~~~~~~~d~vi~~a~   59 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL---DLTDPEALERLLRAIRPDAVVNTAA   59 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc---CCCCHHHHHHHHHhCCCCEEEECCc
Confidence            478899 499999999999999999999888632   122234566667655  99987664

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=94.06  E-value=0.14  Score=44.96  Aligned_cols=37  Identities=22%  Similarity=0.049  Sum_probs=32.6

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      ++||+|.|.|. |-||+.+++.|...|++|++.+|...
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~   39 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP   39 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence            45899999995 99999999999999999998887654

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=94.05  E-value=0.089  Score=47.81  Aligned_cols=63  Identities=19%  Similarity=0.259  Sum_probs=46.3

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------Cc-------ccccChhhhhcCCcEEEEec
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV--------LF-------PYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------~~-------~~~~~l~el~~~aDiv~~~~  138 (223)
                      .++||++.|.|. |.||+++++.+...|++|+..+|+.+...        ..       ....++.+.+.+.|+++.+.
T Consensus       175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA  253 (406)
T PRK07424        175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH  253 (406)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence            578999999996 99999999999999999998877643211        00       01123445677899998765

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=94.04  E-value=0.22  Score=50.37  Aligned_cols=67  Identities=19%  Similarity=0.224  Sum_probs=54.0

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------------------Cc--------cc
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------------------LF--------PY  120 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------------------~~--------~~  120 (223)
                      ..-.|++|+|||-|.-|-+.|..|...|+.|.+|.|+.+.-.                          +.        -.
T Consensus      1781 ~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk 1860 (2142)
T KOG0399|consen 1781 AFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGK 1860 (2142)
T ss_pred             ccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccc
Confidence            345799999999999999999999999999999988765310                          11        12


Q ss_pred             ccChhhhhcCCcEEEEeccCC
Q 035615          121 CANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus       121 ~~~l~el~~~aDiv~~~~p~t  141 (223)
                      ..+++++.++-|.|+++...|
T Consensus      1861 ~vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1861 HVSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred             cccHHHHhhccCeEEEEeCCC
Confidence            368999999999999997544

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.04  E-value=0.11  Score=47.29  Aligned_cols=107  Identities=15%  Similarity=0.125  Sum_probs=66.0

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------Ccccc--cChhhhhcCCcEEEEeccCChhhh--
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFPYC--ANVYDLAVNSDVLVVCCALTEQTH--  145 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~--~~l~el~~~aDiv~~~~p~t~~t~--  145 (223)
                      ++.++++.|+|+|..|.+.++.|+..|++|.++|.......      +....  ....+.++..|+|+.. |.-+...  
T Consensus         3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~s-pgi~~~~~~   81 (438)
T PRK03806          3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVAS-PGIALAHPS   81 (438)
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEEC-CCCCCCCHH
Confidence            35688999999999999999999999999999986543211      11111  1122445678866554 3222111  


Q ss_pred             ---------hccCH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          146 ---------HIINK-DVMAE-LGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       146 ---------~li~~-~~l~~-mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                               .++.+ +++.. ++...+-|--+.|+.--..-|...|+..
T Consensus        82 ~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~  130 (438)
T PRK03806         82 LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAA  130 (438)
T ss_pred             HHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHc
Confidence                     12222 33333 2323455666678887777788888753

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=94.02  E-value=0.081  Score=43.23  Aligned_cols=37  Identities=30%  Similarity=0.387  Sum_probs=32.3

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRR  111 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~  111 (223)
                      ..|++++|.|+|+|.+|..+++.|...|.. +..+|..
T Consensus        15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            468999999999999999999999999985 7777644

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=94.01  E-value=0.2  Score=44.23  Aligned_cols=85  Identities=18%  Similarity=0.271  Sum_probs=54.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC------CCccc---ccC---hhhhhcCCcEEEEeccCChhhh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS------VLFPY---CAN---VYDLAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~---~~~---l~el~~~aDiv~~~~p~t~~t~  145 (223)
                      .|.++.|.|.|.+|..+++.++..|.+|++.+++.++.      .++..   ..+   +.+.....|+++-+++....  
T Consensus       180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~--  257 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP--  257 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH--
Confidence            58899999999999999999999999988776554321      12211   111   22233356888887753211  


Q ss_pred             hccCHHHHhcCCCCcEEEEcCC
Q 035615          146 HIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~ar  167 (223)
                        + ...++.++++..++.++.
T Consensus       258 --~-~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        258 --L-EPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             --H-HHHHHHhccCCEEEEECC
Confidence              1 335566777777777763

>PRK08264 short chain dehydrogenase; Validated

Probab=94.00  E-value=0.12  Score=42.39  Aligned_cols=39  Identities=21%  Similarity=0.227  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEe-cChHHHHHHHHHHhCCC-EEEEEcCCCCC
Q 035615           76 KLGGMQVGIVR-LGNIGSEVLNRLQAFGF-IISYNSRRKRP  114 (223)
Q Consensus        76 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  114 (223)
                      ++.++++.|+| .|.||+.+|+.|...|+ +|+..+|+.++
T Consensus         3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~   43 (238)
T PRK08264          3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES   43 (238)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhh
Confidence            36789999999 59999999999999999 89988887653

>PRK05717 oxidoreductase; Validated

Probab=93.98  E-value=0.23  Score=41.30  Aligned_cols=38  Identities=16%  Similarity=0.108  Sum_probs=33.7

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      ..++||++.|.|. |.||+.+|+.|...|++|+..+++.
T Consensus         6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~   44 (255)
T PRK05717          6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR   44 (255)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence            3578999999995 9999999999999999999887764

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.96  E-value=0.098  Score=46.43  Aligned_cols=85  Identities=20%  Similarity=0.294  Sum_probs=56.1

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC------CcccccC---------hhhhh--cCCcEEEEeccC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV------LFPYCAN---------VYDLA--VNSDVLVVCCAL  140 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~~~~~~~---------l~el~--~~aDiv~~~~p~  140 (223)
                      +.+|.|+|.|.||...++.++.+|. +|++.|+++.+.+      +.....+         ..++-  ..+|+++-|.. 
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-  247 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-  247 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence            3399999999999999999999997 4777888776533      1111111         11222  24899999887 


Q ss_pred             ChhhhhccCHHHHhcCCCCcEEEEcCCC
Q 035615          141 TEQTHHIINKDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       141 t~~t~~li~~~~l~~mk~ga~lIN~arg  168 (223)
                      ++.+   + ...++..+++..++.++-.
T Consensus       248 ~~~~---~-~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         248 SPPA---L-DQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             CHHH---H-HHHHHHhcCCCEEEEEecc
Confidence            2221   1 3456677888777777643

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=93.95  E-value=0.13  Score=42.25  Aligned_cols=38  Identities=21%  Similarity=0.122  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .+.++++.|.| .|.+|+.+++.|...|++|++.+|+..
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~   41 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGD   41 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46789999999 699999999999999999999988753

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.94  E-value=0.66  Score=41.91  Aligned_cols=91  Identities=15%  Similarity=0.230  Sum_probs=64.9

Q ss_pred             CccccCCCEEEEEec---ChH-------HHHHHHHHHhCCCEEEEEcCCCCCCC----Cc-ccccChhhhhcCCcEEEEe
Q 035615           73 LGFKLGGMQVGIVRL---GNI-------GSEVLNRLQAFGFIISYNSRRKRPSV----LF-PYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        73 ~~~~l~g~~vgIiG~---G~i-------G~~~a~~l~~~G~~V~~~~~~~~~~~----~~-~~~~~l~el~~~aDiv~~~  137 (223)
                      .++.+++.+|.++|+   |++       .-.+.+.+...|.+|.+||+.-...+    +. ....++++.++.+|+|++.
T Consensus       316 ~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~~~~~~~~~~~~~~~~e~al~~~D~vVi~  395 (436)
T COG0677         316 AGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYVKELPTREDGEGVTLAILEEALKDADAVVIA  395 (436)
T ss_pred             cCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCCCcchhhhhccccchhhHHHHhccCCEEEEE
Confidence            345688999999996   555       35788888999999999999876432    21 1236789999999999998


Q ss_pred             ccCChhhhhccCHHHHhcCCCCcEEEEcCCC
Q 035615          138 CALTEQTHHIINKDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       138 ~p~t~~t~~li~~~~l~~mk~ga~lIN~arg  168 (223)
                      +-..+  ...++.+.+..+  ..+++++ |+
T Consensus       396 tDH~~--fk~id~~~i~~~--~~vivDt-rn  421 (436)
T COG0677         396 TDHSE--FKEIDYEAIGKE--AKVIVDT-RN  421 (436)
T ss_pred             eccHH--hhcCCHHHhccC--CcEEEEC-cc
Confidence            74221  124677777655  5577775 44

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=93.92  E-value=0.098  Score=44.00  Aligned_cols=86  Identities=19%  Similarity=0.123  Sum_probs=56.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCCCCC-----C-cccccChh-hh--hcCCcEEEEeccCChhhhhc
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKRPSV-----L-FPYCANVY-DL--AVNSDVLVVCCALTEQTHHI  147 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~-----~-~~~~~~l~-el--~~~aDiv~~~~p~t~~t~~l  147 (223)
                      .|.++.|.|.|.+|+.+++.++.+|.+ |++.+++.+...     + ........ +.  -...|+++.++....    .
T Consensus        97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~----~  172 (277)
T cd08255          97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS----A  172 (277)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH----H
Confidence            488999999999999999999999998 888876543321     1 01000111 11  124788877664221    1


Q ss_pred             cCHHHHhcCCCCcEEEEcCCC
Q 035615          148 INKDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       148 i~~~~l~~mk~ga~lIN~arg  168 (223)
                      + ...+..++++..+++++-.
T Consensus       173 ~-~~~~~~l~~~g~~~~~g~~  192 (277)
T cd08255         173 L-ETALRLLRDRGRVVLVGWY  192 (277)
T ss_pred             H-HHHHHHhcCCcEEEEEecc
Confidence            1 4566778888889888754

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK12367 short chain dehydrogenase; Provisional

Probab=93.90  E-value=0.13  Score=43.29  Aligned_cols=65  Identities=17%  Similarity=0.186  Sum_probs=47.0

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCC-C----C---c-----ccccChhhhhcCCcEEEEecc
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPS-V----L---F-----PYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~----~---~-----~~~~~l~el~~~aDiv~~~~p  139 (223)
                      ..+.|+++.|.|. |.||+.+|+.+...|++|++.+|+.... .    .   .     ....+.++.+...|+++.+..
T Consensus        10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG   88 (245)
T PRK12367         10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHG   88 (245)
T ss_pred             HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCc
Confidence            4578999999996 7899999999999999999887765111 0    0   0     011233456778999988864

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=93.89  E-value=0.18  Score=44.30  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=32.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      .|.+|.|+|.|.+|..+++.++..|.+|++.++++++
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~  202 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEK  202 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHH
Confidence            4889999999999999999999999999888776543

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=93.87  E-value=0.2  Score=44.45  Aligned_cols=85  Identities=18%  Similarity=0.168  Sum_probs=56.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----Cccc---c--cCh-hh---hhc-CCcEEEEeccCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----LFPY---C--ANV-YD---LAV-NSDVLVVCCALT  141 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~---~--~~l-~e---l~~-~aDiv~~~~p~t  141 (223)
                      .|.+|.|.|.|.+|...++.++..|+ +|++.++++.+..     ++..   .  .++ ++   +.. ..|+++-++...
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~  270 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV  270 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence            48899999999999999999999999 5888877654321     2111   1  111 11   111 378888776422


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                       .+   + ...++.++++..++.++-
T Consensus       271 -~~---~-~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         271 -PA---L-ETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             -HH---H-HHHHHHHhcCCEEEEEcc
Confidence             11   1 345667788888888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=93.86  E-value=2.5  Score=40.09  Aligned_cols=108  Identities=16%  Similarity=0.170  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHh-----CCC-------EE
Q 035615           38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQA-----FGF-------II  105 (223)
Q Consensus        38 vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~-----~G~-------~V  105 (223)
                      +|--+++-+|+..|-                    .+..|...+|.|+|.|..|-.+|+.+..     .|.       ++
T Consensus       300 TaaV~lAgll~A~r~--------------------~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i  359 (581)
T PLN03129        300 TAAVALAGLLAALRA--------------------TGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRI  359 (581)
T ss_pred             HHHHHHHHHHHHHHH--------------------hCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcE
Confidence            566677777776663                    2456899999999999999999998876     466       67


Q ss_pred             EEEcCCCC----C---CC--------CcccccChhhhhcC--CcEEEEeccCChhhhhccCHHHHhcCC---CCcEEEEc
Q 035615          106 SYNSRRKR----P---SV--------LFPYCANVYDLAVN--SDVLVVCCALTEQTHHIINKDVMAELG---KGGMIINV  165 (223)
Q Consensus       106 ~~~~~~~~----~---~~--------~~~~~~~l~el~~~--aDiv~~~~p~t~~t~~li~~~~l~~mk---~ga~lIN~  165 (223)
                      +.+|+..-    .   ..        ......+|.|+++.  .|+++=+-    ..-++|+++.++.|.   +..++.=.
T Consensus       360 ~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~~Ma~~~~rPIIFaL  435 (581)
T PLN03129        360 WLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLS----GVGGTFTKEVLEAMASLNERPIIFAL  435 (581)
T ss_pred             EEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence            77776531    1   10        01123589999988  88876532    123789999999995   77888888


Q ss_pred             CCCc
Q 035615          166 GRGA  169 (223)
Q Consensus       166 arg~  169 (223)
                      |.-.
T Consensus       436 SNPt  439 (581)
T PLN03129        436 SNPT  439 (581)
T ss_pred             CCCC
Confidence            8665

>PRK15076 alpha-galactosidase; Provisional

Probab=93.86  E-value=0.053  Score=49.65  Aligned_cols=108  Identities=9%  Similarity=0.010  Sum_probs=65.2

Q ss_pred             CEEEEEecChHHHHHHH--HH---HhC-CCEEEEEcCCCCCCC-------------C----cccccChhhhhcCCcEEEE
Q 035615           80 MQVGIVRLGNIGSEVLN--RL---QAF-GFIISYNSRRKRPSV-------------L----FPYCANVYDLAVNSDVLVV  136 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~--~l---~~~-G~~V~~~~~~~~~~~-------------~----~~~~~~l~el~~~aDiv~~  136 (223)
                      ++|+|||.|.+|...+-  .+   .++ |.+|..+|..++...             +    .....++.+.++.||+|+.
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~   81 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN   81 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence            58999999999955433  22   233 558999998764322             1    1124567889999999999


Q ss_pred             eccCC--hhhh----------hcc-----------------C-------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 035615          137 CCALT--EQTH----------HII-----------------N-------KDVMAELGKGGMIINVGRGALIDEKEMLQFL  180 (223)
Q Consensus       137 ~~p~t--~~t~----------~li-----------------~-------~~~l~~mk~ga~lIN~arg~~vd~~al~~aL  180 (223)
                      +.-..  +.-+          +++                 +       .+.++...|++++||++..--+-..++. .+
T Consensus        82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~  160 (431)
T PRK15076         82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY  160 (431)
T ss_pred             eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence            97542  1110          000                 1       1234445689999999876655555555 22


Q ss_pred             HcCCceEE
Q 035615          181 VQGDINGV  188 (223)
Q Consensus       181 ~~~~i~~a  188 (223)
                      ...++.|.
T Consensus       161 ~~~rviG~  168 (431)
T PRK15076        161 PGIKTVGL  168 (431)
T ss_pred             CCCCEEEE
Confidence            33455543

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=93.85  E-value=0.15  Score=44.18  Aligned_cols=84  Identities=18%  Similarity=0.137  Sum_probs=56.7

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc---c---cChhhhh-----cCCcEEEEeccC
Q 035615           78 GGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY---C---ANVYDLA-----VNSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~---~---~~l~el~-----~~aDiv~~~~p~  140 (223)
                      .|.+|.|.| .|.+|+.+++.++.+|.+|++..++.++.+     ++..   +   .++.+.+     ...|+++-++. 
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G-  216 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG-  216 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC-
Confidence            488999999 599999999999999999988776543321     1110   1   1233222     23678877664 


Q ss_pred             ChhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          141 TEQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       141 t~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      .   .. + ...++.++++..+|.++.
T Consensus       217 ~---~~-~-~~~~~~l~~~G~iv~~G~  238 (325)
T TIGR02825       217 G---EF-S-NTVIGQMKKFGRIAICGA  238 (325)
T ss_pred             H---HH-H-HHHHHHhCcCcEEEEecc
Confidence            1   11 2 567788899999998875

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.84  E-value=0.14  Score=42.81  Aligned_cols=35  Identities=14%  Similarity=0.303  Sum_probs=31.8

Q ss_pred             cCCCEEEEEecC---hHHHHHHHHHHhCCCEEEEEcCC
Q 035615           77 LGGMQVGIVRLG---NIGSEVLNRLQAFGFIISYNSRR  111 (223)
Q Consensus        77 l~g~~vgIiG~G---~iG~~~a~~l~~~G~~V~~~~~~  111 (223)
                      +.||++.|.|.+   .||+++|+.|...|++|+..+|+
T Consensus         5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~   42 (252)
T PRK06079          5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN   42 (252)
T ss_pred             cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence            789999999985   79999999999999999888775

>PRK09186 flagellin modification protein A; Provisional

Probab=93.83  E-value=0.13  Score=42.56  Aligned_cols=37  Identities=27%  Similarity=0.301  Sum_probs=33.0

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      +++|++.|.|. |.||+.+|+.|...|++|++.+|+++
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~   39 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKE   39 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChH
Confidence            56899999995 89999999999999999998887654

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=93.83  E-value=0.84  Score=39.57  Aligned_cols=38  Identities=26%  Similarity=0.348  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRK  112 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~  112 (223)
                      ..|...+|.|+|+|.+|..+|+.|...|.+ +..+|...
T Consensus        15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491          15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            468999999999999999999999999995 77877654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=93.83  E-value=0.33  Score=44.50  Aligned_cols=32  Identities=28%  Similarity=0.434  Sum_probs=27.7

Q ss_pred             EEEEEecChHHHHHHHHHHhCCC------EEEEEcCCC
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGF------IISYNSRRK  112 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~------~V~~~~~~~  112 (223)
                      +|.|||.|.+|..+++.|...|.      ++.++|...
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~   38 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDN   38 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCC
Confidence            48899999999999999999888      688877553

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK07478 short chain dehydrogenase; Provisional

Probab=93.81  E-value=0.11  Score=43.10  Aligned_cols=38  Identities=21%  Similarity=0.258  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      ++++|++.|.|. |.||+.+++.|...|++|+..+|++.
T Consensus         3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~   41 (254)
T PRK07478          3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQA   41 (254)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467999999995 89999999999999999998888754

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=93.77  E-value=0.081  Score=41.48  Aligned_cols=29  Identities=28%  Similarity=0.295  Sum_probs=24.4

Q ss_pred             EEEEEecChHHHHHHHHHH-hCCCEEEEEc
Q 035615           81 QVGIVRLGNIGSEVLNRLQ-AFGFIISYNS  109 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~  109 (223)
                      +|||-|||+||+.+++.+. .-.++|.+++
T Consensus         2 kVgINGfGRIGR~v~r~~~~~~~~evvaIn   31 (151)
T PF00044_consen    2 KVGINGFGRIGRLVLRAALDQPDIEVVAIN   31 (151)
T ss_dssp             EEEEESTSHHHHHHHHHHHTSTTEEEEEEE
T ss_pred             EEEEECCCcccHHHHHhhcccceEEEEEEe
Confidence            7999999999999999987 4567877654

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=93.74  E-value=0.26  Score=42.61  Aligned_cols=62  Identities=16%  Similarity=0.134  Sum_probs=44.5

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------------CcccccChhhhhcCCcEEEE
Q 035615           78 GGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------------LFPYCANVYDLAVNSDVLVV  136 (223)
Q Consensus        78 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------------~~~~~~~l~el~~~aDiv~~  136 (223)
                      .|++|.|.| .|-||+.+++.|...|++|.+..|+.....                    ......+++++++.+|+|+.
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih   83 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH   83 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence            589999999 699999999999999999986655443210                    00112346677888998876


Q ss_pred             ecc
Q 035615          137 CCA  139 (223)
Q Consensus       137 ~~p  139 (223)
                      +..
T Consensus        84 ~A~   86 (322)
T PLN02986         84 TAS   86 (322)
T ss_pred             eCC
Confidence            653

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=93.74  E-value=0.13  Score=44.47  Aligned_cols=87  Identities=15%  Similarity=0.113  Sum_probs=56.2

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCCCCC-----Ccc---cc--cChh--hh--hcCCcEEEEeccCCh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKRPSV-----LFP---YC--ANVY--DL--AVNSDVLVVCCALTE  142 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~-----~~~---~~--~~l~--el--~~~aDiv~~~~p~t~  142 (223)
                      .|.+|.|+|.|.+|+.+++.++..|++ |++.+++.+...     +..   ..  .+..  ..  -+..|+++-+++...
T Consensus       159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~  238 (334)
T cd08234         159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVPK  238 (334)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCChH
Confidence            478999999999999999999999998 777776543221     110   00  0110  11  245788887764221


Q ss_pred             hhhhccCHHHHhcCCCCcEEEEcCCCc
Q 035615          143 QTHHIINKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       143 ~t~~li~~~~l~~mk~ga~lIN~arg~  169 (223)
                           ...+.++.|+++..+|+++...
T Consensus       239 -----~~~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         239 -----TLEQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             -----HHHHHHHHHhcCCEEEEEecCC
Confidence                 1244567778888888876543

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=93.70  E-value=0.21  Score=37.01  Aligned_cols=97  Identities=15%  Similarity=0.148  Sum_probs=65.2

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH-hcC-C
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM-AEL-G  157 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l-~~m-k  157 (223)
                      |+|.|+|-|.|+..+++.++.+|.+++..+..++.       .+  .-...+|-+. ++|..+.....++.+.+ +-. +
T Consensus         3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~-------~s--~~~~~ad~~~-~~~~~~~~~~yl~~e~I~~ia~~   72 (110)
T PF00289_consen    3 KKVLIANRGEIAVRIIRALRELGIETVAVNSNPDT-------VS--THVDMADEAY-FEPPGPSPESYLNIEAIIDIARK   72 (110)
T ss_dssp             SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGT-------TG--HHHHHSSEEE-EEESSSGGGTTTSHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCcceeccCchhc-------cc--ccccccccce-ecCcchhhhhhccHHHHhhHhhh
Confidence            68999999999999999999999996655443321       11  2244567664 34533333444443322 211 3


Q ss_pred             CCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          158 KGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       158 ~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      .++..+--|-|.+-....|.+++.+..+.
T Consensus        73 ~g~~~i~pGyg~lse~~~fa~~~~~~gi~  101 (110)
T PF00289_consen   73 EGADAIHPGYGFLSENAEFAEACEDAGII  101 (110)
T ss_dssp             TTESEEESTSSTTTTHHHHHHHHHHTT-E
T ss_pred             hcCcccccccchhHHHHHHHHHHHHCCCE
Confidence            47888889999999999999999887776

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=93.70  E-value=0.21  Score=43.77  Aligned_cols=63  Identities=17%  Similarity=0.236  Sum_probs=43.9

Q ss_pred             CEEEEEecChHHHHHHHHHHh--CCCEEEEEcCCCCCCCCc---------------cccc-ChhhhhcCCcEEEEec--c
Q 035615           80 MQVGIVRLGNIGSEVLNRLQA--FGFIISYNSRRKRPSVLF---------------PYCA-NVYDLAVNSDVLVVCC--A  139 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~--~G~~V~~~~~~~~~~~~~---------------~~~~-~l~el~~~aDiv~~~~--p  139 (223)
                      ++|+|||.|.+|+++|-.|..  ++-++..+|...+..++.               .... .-.+.++.||+|+++.  |
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p   80 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP   80 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence            589999999999999999854  344788898874433211               0011 1146688999999997  5


Q ss_pred             CCh
Q 035615          140 LTE  142 (223)
Q Consensus       140 ~t~  142 (223)
                      -.|
T Consensus        81 rKp   83 (313)
T COG0039          81 RKP   83 (313)
T ss_pred             CCC
Confidence            444

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=93.69  E-value=0.24  Score=43.64  Aligned_cols=85  Identities=18%  Similarity=0.178  Sum_probs=55.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCCCCC-----Cccc---c--cCh----hhhhc--CCcEEEEeccC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKRPSV-----LFPY---C--ANV----YDLAV--NSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~-----~~~~---~--~~l----~el~~--~aDiv~~~~p~  140 (223)
                      .|++|.|.|.|.+|...++.++.+|.+ |++.+++.++.+     ++..   .  .+.    .++..  ..|+|+-++..
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~  255 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR  255 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence            488999999999999999999999995 888877654321     1111   0  111    12222  47888877642


Q ss_pred             ChhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          141 TEQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       141 t~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                       +.+   + ...+..++++..+|.++-
T Consensus       256 -~~~---~-~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       256 -PET---Y-KQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             -HHH---H-HHHHHHhccCCEEEEECC
Confidence             221   2 335667788888888764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=93.68  E-value=0.33  Score=41.82  Aligned_cols=85  Identities=21%  Similarity=0.266  Sum_probs=55.8

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc---cc--C-hhhhhcCCcEEEEeccCChhhhh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY---CA--N-VYDLAVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~---~~--~-l~el~~~aDiv~~~~p~t~~t~~  146 (223)
                      .|.+|.|+|.|.+|+.+++.++.+|++|++.+++.....     +...   ..  + ....-...|+++-++....    
T Consensus       162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~----  237 (330)
T cd08245         162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA----  237 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence            478999999999999999999999999988877654321     1110   00  0 1111235788877654211    


Q ss_pred             ccCHHHHhcCCCCcEEEEcCC
Q 035615          147 IINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       147 li~~~~l~~mk~ga~lIN~ar  167 (223)
                       ...+.+..|+++..+|+++.
T Consensus       238 -~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         238 -AAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             -HHHHHHHhcccCCEEEEECC
Confidence             12456777888888888763

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PRK06196 oxidoreductase; Provisional

Probab=93.67  E-value=0.15  Score=44.13  Aligned_cols=38  Identities=21%  Similarity=0.228  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .+.|+++.|.|. |.||+.+++.|...|++|++.+|+..
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~   61 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD   61 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467999999996 89999999999999999999888753

>PRK08589 short chain dehydrogenase; Validated

Probab=93.67  E-value=0.19  Score=42.50  Aligned_cols=36  Identities=17%  Similarity=0.038  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRR  111 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~  111 (223)
                      .+.||++.|.|. |.||+.+++.|...|++|+..+|+
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~   39 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA   39 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            367999999996 899999999999999999998876

>PRK07825 short chain dehydrogenase; Provisional

Probab=93.66  E-value=0.22  Score=41.84  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      ++.|+++.|.|. |.||+.+++.|...|++|+..+|++.
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~   40 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEA   40 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence            367899999996 99999999999999999998887653

>PRK06153 hypothetical protein; Provisional

Probab=93.64  E-value=0.083  Score=47.54  Aligned_cols=37  Identities=27%  Similarity=0.354  Sum_probs=32.2

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR  111 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  111 (223)
                      ..|++++|+|||+|.+|..++..|.+.|. ++..+|..
T Consensus       172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        172 AKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             HHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            36899999999999999999999999998 57777643

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=93.63  E-value=0.18  Score=44.43  Aligned_cols=92  Identities=16%  Similarity=0.160  Sum_probs=56.1

Q ss_pred             EEEEEec-ChHHHHHHHHHHhCCC-------EEEEEcCCCCC--CCC-------cc-------c-ccChhhhhcCCcEEE
Q 035615           81 QVGIVRL-GNIGSEVLNRLQAFGF-------IISYNSRRKRP--SVL-------FP-------Y-CANVYDLAVNSDVLV  135 (223)
Q Consensus        81 ~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~--~~~-------~~-------~-~~~l~el~~~aDiv~  135 (223)
                      +|+|||. |.+|..+|..|...|.       ++..+|+.+..  ..+       ..       . ..+..+.+++||+|+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            5899999 9999999999886444       48888875432  211       00       0 114467889999999


Q ss_pred             EeccCC--h-hhh-hcc--C-------HHHHhcC-CCCcEEEEcCCCcccCHH
Q 035615          136 VCCALT--E-QTH-HII--N-------KDVMAEL-GKGGMIINVGRGALIDEK  174 (223)
Q Consensus       136 ~~~p~t--~-~t~-~li--~-------~~~l~~m-k~ga~lIN~arg~~vd~~  174 (223)
                      ++.-..  + +|+ .++  |       .+.+... ++.+++|.++  ..+|.-
T Consensus        81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~  131 (324)
T TIGR01758        81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTN  131 (324)
T ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHH
Confidence            876332  1 111 111  1       1233344 4778888877  444433

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK07890 short chain dehydrogenase; Provisional

Probab=93.63  E-value=0.19  Score=41.64  Aligned_cols=37  Identities=19%  Similarity=0.220  Sum_probs=33.1

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      +.+|++.|.|. |.||+.+|+.|...|++|++.+|++.
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~   40 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAE   40 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            57899999995 89999999999999999999988653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	223
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		6e-44
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		2e-30
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		1e-24
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		1e-21
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		4e-21
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		8e-20
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		3e-19
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		7e-18
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		1e-17
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		4e-17
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		4e-17
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		4e-17
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		4e-16
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		4e-16
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		8e-16
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		2e-15
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		2e-15
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		3e-15
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		5e-15
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		6e-15
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		6e-15
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		7e-15
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		8e-15
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		2e-14
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		2e-14
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		2e-14
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		3e-14
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		3e-14
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		4e-14
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		8e-14
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		8e-14
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		1e-13
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		8e-13
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		3e-11
3kbo_A	315	2.14 Angstrom Crystal Structure Of Putative Oxidore		9e-11
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		3e-10
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		4e-10
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		5e-10
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		5e-10
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		6e-10
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		7e-10
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		8e-10
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		2e-09
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		2e-09
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		3e-09
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		4e-08
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		4e-08
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		4e-08
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		4e-08
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		1e-07
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		2e-07
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		3e-07
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		5e-07
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		5e-07
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		3e-06
3gvx_A	290	Crystal Structure Of Glycerate Dehydrogenase Relate		1e-04
2o4c_A	380	Crystal Structure Of D-erythronate-4-phosphate Dehy		3e-04

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score =  173 bits (439), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 90/176 (51%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VADLAIGL++  LRRI   + YVR G W K GD+ L  K  G +VGI+ LG IG  V  R
Sbjct: 124 VADLAIGLILAVLRRICECDKYVRRGAW-KFGDFKLTTKFSGKRVGIIGLGRIGLAVAER 182
Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
            +AF   ISY SR K+P+  + Y  +V +LA NSD+LVV C LT +T HIIN++V+  LG
Sbjct: 183 AEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALG 242
Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
             G++IN+GRG  +DE E++  LV+G + G GLDVFE +P VP++   L+N+VLLP
Sbjct: 243 PKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLP 298

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 102/182 (56%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VADL I L +  LRR+  G+  VR G WA     PLG    G ++G++ LG IG  + +R
Sbjct: 130 VADLGIALXLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASR 189
Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
            +AFG  + Y +R     V +    +  DLA +SDVL VC A +  T +I++  ++  LG
Sbjct: 190 AEAFGXSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALG 249
Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNA 217
             G+++NV RG ++DE  +++ L  G I G GLDVF N+P +  E     N VL P Q +
Sbjct: 250 PEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLXPHQGS 309
Query: 218 LT 219
            T
Sbjct: 310 AT 311

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 105/190 (55%), Gaps = 9/190 (4%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFK----LGGMQVGIVRLGNIGSE 93
           VA+  +GL+I+ +R+I   + ++R G W        GFK    L G +VGI+ +G IG  
Sbjct: 101 VAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKA 160
Query: 94  VLNRLQAFGFIISYNSRRKRPSV---LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150
           +  RL  FG  + Y SR ++ +V   L     ++ +L   SD++++   LT  T+HIIN+
Sbjct: 161 IARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINE 220
Query: 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLD-NI 209
           + + +L +G  ++N+GRGAL+DEK + + + QG + G   DVFE +P    E  + +   
Sbjct: 221 ERVKKL-EGKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWET 279
Query: 210 VLLPCQNALT 219
           VL P    L 
Sbjct: 280 VLTPHYAGLA 289

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 96/191 (50%), Gaps = 10/191 (5%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPL---GFKLGGMQVGIVRLGNIGSEV 94
            A+LA+ LL+   RR+      V+ G W  T   PL   G+ L    VGI+ LG IG  +
Sbjct: 113 TAELAVSLLLTTCRRLPEAIEEVKNGGW--TSWKPLWLCGYGLTQSTVGIIGLGRIGQAI 170
Query: 95  LNRLQAFGF-IISYNSRRKRPSVLFPYCA---NVYDLAVNSDVLVVCCALTEQTHHIINK 150
             RL+ FG     Y  R+ RP     + A   +  +LA  SD +VV C+LT  T  + NK
Sbjct: 171 ARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNK 230
Query: 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEP-LRLDNI 209
           D   ++ +  + IN+ RG ++++ ++ Q L  G I   GLDV   +P     P L L N 
Sbjct: 231 DFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNC 290
Query: 210 VLLPCQNALTH 220
           V+LP   + TH
Sbjct: 291 VILPHIGSATH 301

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 95/191 (49%), Gaps = 10/191 (5%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPL---GFKLGGMQVGIVRLGNIGSEV 94
            A+LA+ LL+   RR+      V+ G W  T   PL   G+ L    VGI+ LG IG  +
Sbjct: 111 TAELAVSLLLTTCRRLPEAIEEVKNGGW--TSWKPLWLCGYGLTQSTVGIIGLGRIGQAI 168
Query: 95  LNRLQAFGF-IISYNSRRKRPSVLFPYCA---NVYDLAVNSDVLVVCCALTEQTHHIINK 150
             RL+ FG     Y  R+ RP     + A   +  +LA  SD +VV C+LT  T  + NK
Sbjct: 169 ARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNK 228
Query: 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEP-LRLDNI 209
           D   +  +  + IN+ RG ++++ ++ Q L  G I   GLDV   +P     P L L N 
Sbjct: 229 DFFQKXKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNC 288
Query: 210 VLLPCQNALTH 220
           V+LP   + TH
Sbjct: 289 VILPHIGSATH 299

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score = 93.6 bits (231), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 96/171 (56%), Gaps = 8/171 (4%)
Query: 51  RRISPGNWYVRAGLWAKTG-----DYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFII 105
           R +  G+ +VR+G W K G      + LG+ + G  +GI+ LG IG  +  R + F   I
Sbjct: 117 RHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRI 176
Query: 106 SYNSRRKRPSVLFPYCAN---VYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMI 162
            Y SR ++  V     A    + DL   SD +V+   LT +T+H+IN++ +  + K  ++
Sbjct: 177 LYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAIL 236
Query: 163 INVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
           IN+ RG ++D   +++ L +G I G GLDVFE +P   +E  +LDN+VL P
Sbjct: 237 INIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTP 287

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 51  RRISPGNWYVRAGLWAKTG-----DYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFII 105
           R +  G+ +VR+G W K G      + LG+ + G  +GI+ LG IG  +  R + F   I
Sbjct: 117 RHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNXRI 176
Query: 106 SYNSRRKRPSVLFPYCAN---VYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMI 162
            Y SR ++  V     A    + DL   SD +V+   LT +T+H+IN++ +    K  ++
Sbjct: 177 LYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAIL 236
Query: 163 INVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
           IN+ RG ++D   +++ L +G I G GLDVFE +P   +E  +LDN+VL P
Sbjct: 237 INIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTP 287

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 101/186 (54%), Gaps = 6/186 (3%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+LA+GL+    R+I+  +  +R G+WAK     +G +L G  +GI+  G IG +V   
Sbjct: 103 VAELAVGLMFSVARKIAFADRKMREGVWAKK--EAMGIELEGKTIGIIGFGRIGYQVAKI 160
Query: 98  LQAFGF-IISYNS--RRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA 154
             A G  I+ Y+     +R   +     ++  L   SDV+ +   L E T+H+IN++ + 
Sbjct: 161 ANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLK 220
Query: 155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-RLDNIVLLP 213
            + K  ++IN  RG ++D   +++ L +G I G GLDVFE +P     PL + DN+VL P
Sbjct: 221 LMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTP 280
Query: 214 CQNALT 219
              A T
Sbjct: 281 HIGAST 286

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 4/186 (2%)
Query: 39  ADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPL-GFKLGGMQVGIVRLGNIGSEVLNR 97
           A++A  L+++  RR    +  VR+G W   G   L G  L G ++GI   G IG  +  R
Sbjct: 132 AEIAXLLVLNACRRGYEADRXVRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIATR 191
Query: 98  LQAFGFIISYNSRRKRPSVLFP---YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA 154
            + FG  I Y++R +    L     Y   +  L   SD+ ++      +    ++ D +A
Sbjct: 192 ARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIA 251
Query: 155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPC 214
           ++ +G ++IN+ RG LI++  +++ L    +   GLDVF N+P +      LDNI L P 
Sbjct: 252 KIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPH 311
Query: 215 QNALTH 220
             + TH
Sbjct: 312 IGSATH 317

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 42/218 (19%)
Query: 2   LCYQTNLYACILSEYQNWLKQLIKQKSIAKQADLPIVADLAIGLLIDFLRRISPGNWYVR 61
           LC+  NLY         WL Q +++ +  +               ++ +R ++ G   +R
Sbjct: 127 LCHILNLY-----RRATWLHQALREGTRVQS--------------VEQIREVASGAARIR 167
Query: 62  AGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFII----SYNSRRKRPSVL 117
                            G  +GI+ LG +G  V  R +AFGF +     Y S     ++ 
Sbjct: 168 -----------------GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALG 210
Query: 118 FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEML 177
               + + DL  +SD + + C L E  HH+IN   + ++ +G  ++N  RG L+DEK + 
Sbjct: 211 LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALA 270
Query: 178 QFLVQGDINGVGLDVFENDP-NVPKEPLR-LDNIVLLP 213
           Q L +G I G  LDV E++P +  + PL+   N++  P
Sbjct: 271 QALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 308

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 42/218 (19%)
Query: 2   LCYQTNLYACILSEYQNWLKQLIKQKSIAKQADLPIVADLAIGLLIDFLRRISPGNWYVR 61
           LC+  NLY         WL Q +++ +  +               ++ +R ++ G   +R
Sbjct: 130 LCHILNLY-----RRTTWLHQALREGTRVQS--------------VEQIREVASGAARIR 170
Query: 62  AGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFII----SYNSRRKRPSVL 117
                            G  +GI+ LG +G  V  R +AFGF +     Y S     ++ 
Sbjct: 171 -----------------GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIERALG 213
Query: 118 FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEML 177
               + + DL  +SD + + C L E  HH+IN   + ++ +G  ++N  RG L+DEK + 
Sbjct: 214 LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALA 273
Query: 178 QFLVQGDINGVGLDVFENDP-NVPKEPLR-LDNIVLLP 213
           Q L +G I G  LDV E++P +  + PL+   N++  P
Sbjct: 274 QALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 311

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 42/218 (19%)
Query: 2   LCYQTNLYACILSEYQNWLKQLIKQKSIAKQADLPIVADLAIGLLIDFLRRISPGNWYVR 61
           LC+  NLY         WL Q +++ +  +               ++ +R ++ G   +R
Sbjct: 130 LCHILNLY-----RRTTWLHQALREGTRVQS--------------VEQIREVASGAARIR 170
Query: 62  AGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFII----SYNSRRKRPSVL 117
                            G  +GI+ LG +G  V  R +AFGF +     Y S     ++ 
Sbjct: 171 -----------------GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIERALG 213
Query: 118 FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEML 177
               + + DL  +SD + + C L E  HH+IN   + ++ +G  ++N  RG L+DEK + 
Sbjct: 214 LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALA 273
Query: 178 QFLVQGDINGVGLDVFENDP-NVPKEPLR-LDNIVLLP 213
           Q L +G I G  LDV E++P +  + PL+   N++  P
Sbjct: 274 QALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 311

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 12/184 (6%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFK-LGGMQVGIVRLGNIGSEVLN 96
           VA+L IG +I  +RRI P +    AG W KT    +G + + G  +GIV  GNIGS+V N
Sbjct: 117 VAELVIGEIIMLMRRIFPRSVSAHAGGWEKTA---IGSREVRGKTLGIVGYGNIGSQVGN 173
Query: 97  RLQAFGFIISY--NSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA 154
             ++ G  + Y   S + +   + P  A++ +L   SDV+ +    ++ T  +I +  + 
Sbjct: 174 LAESLGMTVRYYDTSDKLQYGNVKP-AASLDELLKTSDVVSLHVPSSKSTSKLITEAKLR 232
Query: 155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKE----PLR-LDNI 209
           ++ KG  +IN  RG+ +D + + + L +G + G  +DVF  +P    E    PL+ L+N+
Sbjct: 233 KMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENV 292
Query: 210 VLLP 213
           +L P
Sbjct: 293 ILTP 296

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 42/218 (19%)
Query: 2   LCYQTNLYACILSEYQNWLKQLIKQKSIAKQADLPIVADLAIGLLIDFLRRISPGNWYVR 61
           LC+  NLY         WL Q +++ +  +               ++ +R ++ G   +R
Sbjct: 130 LCHILNLY-----RRTTWLHQALREGTRVQS--------------VEQIREVASGAARIR 170
Query: 62  AGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFII----SYNSRRKRPSVL 117
                            G  +GI+ L  +G  V  R +AFGF +     Y S     ++ 
Sbjct: 171 -----------------GETLGIIGLERVGQAVALRAKAFGFNVLFYDPYLSDGIERALG 213
Query: 118 FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEML 177
               + + DL  +SD + + C L E  HH+IN   + ++ +G  ++N  RG L+DEK + 
Sbjct: 214 LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALA 273
Query: 178 QFLVQGDINGVGLDVFENDP-NVPKEPLR-LDNIVLLP 213
           Q L +G I G  LDV E++P +  + PL+   N++  P
Sbjct: 274 QALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 311

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 94/160 (58%), Gaps = 5/160 (3%)
Query: 56  GNWYVRAGLW-AKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP 114
           G  Y R GLW A   +  LG  L G+ +G+V +G IG  V  R  AFG  + Y++R  +P
Sbjct: 120 GAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKP 179
Query: 115 SVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEK 174
            + +P+  ++ +L   +DV+ +   LT +TH ++N++ +  + +G +++N  RGAL+D +
Sbjct: 180 -LPYPFL-SLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTE 237
Query: 175 EMLQFLVQGDINGVGLDVFENDPNVPKEPL-RLDNIVLLP 213
            +++ L +G + G GLDV + +P  P  PL  L N V+ P
Sbjct: 238 ALVEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITP 276

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 5/173 (2%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+  + +++  +R   P + + R G W         + L  M VG V  G IG  VL R
Sbjct: 151 VAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRR 210
Query: 98  LQAFGFIISYNSRRKRPSVL-----FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152
           L  F   + Y  R + P  +       + A   D+    DV+ + C L  +T H+IN + 
Sbjct: 211 LAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDET 270
Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR 205
           +    +G  I+N  RG L D   + + L  G + G   DV+   P     P R
Sbjct: 271 LKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWR 323

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 5/173 (2%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+  + +++  +R   P + + R G W         + L  M VG V  G IG  VL R
Sbjct: 150 VAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRR 209
Query: 98  LQAFGFIISYNSRRKRPSVL-----FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152
           L  F   + Y  R + P  +       + A   D+    DV+ + C L  +T H+IN + 
Sbjct: 210 LAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDET 269
Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR 205
           +    +G  I+N  RG L D   + + L  G + G   DV+   P     P R
Sbjct: 270 LKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWR 322

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 5/173 (2%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+  + +++  +R   P + + R G W         + L  M VG V  G IG  VL R
Sbjct: 151 VAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRR 210
Query: 98  LQAFGFIISYNSRRKRPSVL-----FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152
           L  F   + Y  R + P  +       + A   D+    DV+ + C L  +T H+IN + 
Sbjct: 211 LAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDET 270
Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR 205
           +    +G  I+N  RG L D   + + L  G + G   DV+   P     P R
Sbjct: 271 LKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWR 323

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 76  KLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRK---RPSVLFPYCANVYDLAVNS 131
           ++ G  +G++  G  G  V  R +AFGF +I Y+   +     S+       + DL   S
Sbjct: 149 RIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQS 208
Query: 132 DVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD 191
           D + + C L E  HH+IN   + ++ +G  ++N  RG L+DEK + Q L +G I G  LD
Sbjct: 209 DCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALD 268
Query: 192 VFENDP-NVPKEPLR-LDNIVLLP 213
           V E++P +  + PL+   N++  P
Sbjct: 269 VHESEPFSFAQGPLKDAPNLICTP 292

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
Query: 51  RRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFG-FIISYNS 109
           R+I   +  +R   W ++     G ++ G  VG+V LG IG  V  R+ AFG ++++Y+ 
Sbjct: 116 RQIPAADASLREHTWKRSSFS--GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP 173
Query: 110 --RRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGR 167
                R + L     ++ DL   +D + V    T +T  +I+K+ +A+   G +I+N  R
Sbjct: 174 YVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAAR 233
Query: 168 GALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALT 219
           G L+DE  +   +  G +   GLDVF  +P        L  +V+ P   A T
Sbjct: 234 GGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGAST 285

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
Query: 51  RRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFG-FIISYNS 109
           R+I   +  +R   W ++     G ++ G  VG+V LG IG  V  R+ AFG ++++Y+ 
Sbjct: 115 RQIPAADASLREHTWKRSSFS--GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP 172
Query: 110 --RRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGR 167
                R + L     ++ DL   +D + V    T +T  +I+K+ +A+   G +I+N  R
Sbjct: 173 YVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAAR 232
Query: 168 GALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALT 219
           G L+DE  +   +  G +   GLDVF  +P        L  +V+ P   A T
Sbjct: 233 GGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGAST 284

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 86/164 (52%), Gaps = 10/164 (6%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
            A+LAIGL +   R +   + +VR+G +        G  L    VG + +G IG  + +R
Sbjct: 104 TAELAIGLAVGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADR 163
Query: 98  LQAFGFIISYNSRR-------KRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150
           LQ +G  + Y++R+       +R  +    C+ ++    +SD +++   L   T H++N 
Sbjct: 164 LQGWGATLQYHARKALDTQTEQRLGLRQVACSELF---ASSDFILLALPLNADTLHLVNA 220
Query: 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE 194
           +++A +  G +++N  RG+++DE  +L  L +G + G   DVFE
Sbjct: 221 ELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFE 264

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 93/182 (51%), Gaps = 11/182 (6%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
            A+LAIGL +   R +   + +VR+G +        G  L    VG + +G IG  + +R
Sbjct: 104 TAELAIGLAVGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADR 163
Query: 98  LQAFGFIISYNSRR-------KRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150
           LQ +G  + Y++R+       +R  +    C+ ++    +SD +++   L   T H++N 
Sbjct: 164 LQGWGATLQYHARKALDTQTEQRLGLRQVACSELF---ASSDFILLALPLNADTLHLVNA 220
Query: 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE-NDPNVPKEPLRLDNI 209
           +++A +  G +++N  RG+++DE  +L  L +G + G   DVFE  D      P ++D  
Sbjct: 221 ELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPA 280
Query: 210 VL 211
           +L
Sbjct: 281 LL 282

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 6/188 (3%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+  +  ++  +R   PG   V  G W   G     + L G  +G V  G IG  +L R
Sbjct: 123 VAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQR 182
Query: 98  LQAFGFIISYNSRRKRPSVL-----FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152
           L+ FG  + Y+ R +    L       +  ++ ++    DV+V+   LTE+T  + NK++
Sbjct: 183 LKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKEL 242
Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR-LDNIVL 211
           + +L KG +I+N  RGA+++ + ++  +  G I G   DV++  P     P R + N  +
Sbjct: 243 IGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAM 302
Query: 212 LPCQNALT 219
            P  +  T
Sbjct: 303 TPHTSGTT 310

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 6/188 (3%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+  +  ++  +R   PG   V  G W   G     + L G  +G V  G IG  +L R
Sbjct: 129 VAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQR 188
Query: 98  LQAFGFIISYNSRRKRPSVL-----FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152
           L+ FG  + Y+ R +    L       +  ++ ++    DV+V+   LTE+T  + NK++
Sbjct: 189 LKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKEL 248
Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR-LDNIVL 211
           + +L KG +I+N  RGA+++ + ++  +  G I G   DV++  P     P R + N  +
Sbjct: 249 IGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAM 308
Query: 212 LPCQNALT 219
            P  +  T
Sbjct: 309 TPHTSGTT 316

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 11/189 (5%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
            A+L  G+++   R+I      ++ G W +     +G +L G  +GI+ LG IG EV  R
Sbjct: 126 AAELTCGMIMCLARQIPQATASMKDGKWER--KKFMGTELNGKTLGILGLGRIGREVATR 183
Query: 98  LQAFGF-IISYNSRRKRPSVLFPYCANVYDLAVNS-----DVLVVCCALTEQTHHIINKD 151
           +Q+FG   I Y+     P V   +   V  L +       D + V   L   T  ++N +
Sbjct: 184 MQSFGMKTIGYDPIIS-PEVSASF--GVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDN 240
Query: 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVL 211
             A+  KG  ++N  RG ++DE  +L+ L  G   G  LDVF  +P   +  +  +N++ 
Sbjct: 241 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVIS 300
Query: 212 LPCQNALTH 220
            P   A T 
Sbjct: 301 CPHLGASTK 309

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 5/173 (2%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+  + +++  +R   P + + R G W         + + GM VG V  G IG  VL  
Sbjct: 150 VAEHVVMMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRL 209
Query: 98  LQAFGFIISYNSRRKRPSVL-----FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152
           L  F   + Y  R + P  +       + A   D+    DV+ + C L  +T H+IN + 
Sbjct: 210 LAPFDMHLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDET 269
Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR 205
           +    +G  ++N  RG L D   +++ L  G + G   DV+   P     P R
Sbjct: 270 LKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWR 322

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 5/173 (2%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+  + +++  +R   P + + R G W         + + GM VG V  G IG  VL  
Sbjct: 151 VAEHVVMMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRL 210
Query: 98  LQAFGFIISYNSRRKRPSVL-----FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152
           L  F   + Y  R + P  +       + A   D+    DV+ + C L  +T H+IN + 
Sbjct: 211 LAPFDMHLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDET 270
Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR 205
           +    +G  ++N  RG L D   +++ L  G + G   DV+   P     P R
Sbjct: 271 LKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWR 323

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 10/184 (5%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPL---GFKLGGMQVGIVRLGNIGSEV 94
            A++A+ LL+   RR   G   +R   W   G  PL   G KL    +GI   G+IG  +
Sbjct: 104 TAEIAMLLLLGSARRAGEGEKMIRTRSW--PGWEPLELVGEKLDNKTLGIYGFGSIGQAL 161
Query: 95  LNRLQAFGFIISY-NSRRKRPSVLFPYCANVYD----LAVNSDVLVVCCALTEQTHHIIN 149
             R Q F   I Y ++ R   S    Y A  +D    L   S    +    T +T +  N
Sbjct: 162 AKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFN 221
Query: 150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNI 209
           K  +  L +G +++N  RG L+D + ++  L  G +   G DVF  +PN+ +    L N 
Sbjct: 222 KATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNT 281
Query: 210 VLLP 213
            L P
Sbjct: 282 FLFP 285

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 11/182 (6%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
            A+LAIGL +   R +   + +VR+G +        G  L    VG + +G IG  + +R
Sbjct: 104 TAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADR 163
Query: 98  LQAFGFIISYNSRR-------KRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150
           LQ +G  + Y+  +       +R  +    C+ ++    +SD +++   L   T H++N 
Sbjct: 164 LQGWGATLQYHEAKALDTQTEQRLGLRQVACSELF---ASSDFILLALPLNADTLHLVNA 220
Query: 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE-NDPNVPKEPLRLDNI 209
           +++A +  G +++N  RG+++DE  +L  L +G + G   DVFE  D      P ++D  
Sbjct: 221 ELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPA 280
Query: 210 VL 211
           +L
Sbjct: 281 LL 282

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 11/182 (6%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
            A+LAIGL +   R +   + +VR+G +        G  L    VG + +G IG  + +R
Sbjct: 104 TAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADR 163
Query: 98  LQAFGFIISYNSRR-------KRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150
           LQ +G  + Y+  +       +R  +    C+ ++    +SD +++   L   T H++N 
Sbjct: 164 LQGWGATLQYHEAKALDTQTEQRLGLRQVACSELF---ASSDFILLALPLNADTLHLVNA 220
Query: 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE-NDPNVPKEPLRLDNI 209
           +++A +  G +++N  RG+++DE  +L  L +G + G   DVFE  D      P ++D  
Sbjct: 221 ELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPA 280
Query: 210 VL 211
           +L
Sbjct: 281 LL 282

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 10/166 (6%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
            A+LAIGL +   R +   + +VR+G +        G  L    VG +  G IG    +R
Sbjct: 105 TAELAIGLAVGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGXGAIGLAXADR 164
Query: 98  LQAFGFIISYNSRR-------KRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150
           LQ +G  + Y++ +       +R  +    C+ ++    +SD +++   L   T H++N 
Sbjct: 165 LQGWGATLQYHAAKALDTQTEQRLGLRQVACSELF---ASSDFILLALPLNADTLHLVNA 221
Query: 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEND 196
           +++A +  G +++N  RG+++DE  +L  L +G + G   DVFE +
Sbjct: 222 ELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEXE 267

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 8/161 (4%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           +A+ A+   +  LR +      ++AG + K G + +G +LG   VG++  G+IG   +  
Sbjct: 105 IAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF-IGKELGQQTVGVMGTGHIGQVAIKL 163
Query: 98  LQAFGF-IISYNS---RRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153
            + FG  +I+Y+    +   P   F Y + + DL   SDV+ +     EQ  HIIN+   
Sbjct: 164 FKGFGAKVIAYDPYPMKGDHPD--FDYVS-LEDLFKQSDVIDLHVPGIEQNTHIINEAAF 220
Query: 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE 194
             +  G ++IN  R  LID + ML  L  G + GVG+D +E
Sbjct: 221 NLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYE 261

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 14/191 (7%)
Query: 36  PIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVL 95
           P++++   G L+  +R++       +  LW     +P    L G  + I+  G+IG  + 
Sbjct: 101 PLMSEYVFGHLLSLMRQLPLYREQQKQRLWQS---HPYQ-GLKGRTLLILGTGSIGQHIA 156
Query: 96  NRLQAFGFIISYNSRRKRPSVLFPYCANVYDL-AVN-----SDVLVVCCALTEQTHHIIN 149
           +  + FG  +   SR  R    F     VY L A+N     +DV+V     T +THH+  
Sbjct: 157 HTGKHFGMKVLGVSRSGRERAGF---DQVYQLPALNKMLAQADVIVSVLPATRETHHLFT 213
Query: 150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-RLDN 208
                    G ++ NVGRG  I+E ++L  L  G +    LDVFE +P     PL    N
Sbjct: 214 ASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPN 273
Query: 209 IVLLPCQNALT 219
           +++ P  +A +
Sbjct: 274 LIITPHNSAYS 284

>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase (ycdw) From Salmonella Typhimurium In Complex With Nadp Length = 315

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 8/184 (4%)
Query: 40  DLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQ 99
           + A+  ++ + RR           LW    +Y          VGI   G +G++V   LQ
Sbjct: 104 EYAVSQVLHWFRRFDDYQALKNQALWKPLPEY----TREEFSVGIXGAGVLGAKVAESLQ 159
Query: 100 AFGFIIS--YNSRRKRPSVLFPYCANVYDLAVN-SDVLVVCCALTEQTHHIINKDVMAEL 156
           A+GF +     SR+  P V            +N + VL+     T QT  IIN +++ +L
Sbjct: 160 AWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQL 219
Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-RLDNIVLLPCQ 215
             G  ++N+ RG  + E ++L  L  G + G  LDVF  +P   + PL R   +   P  
Sbjct: 220 PDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEPLPQESPLWRHPRVAXTPHI 279
Query: 216 NALT 219
            A+T
Sbjct: 280 AAVT 283

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+     ++  ++R+      V+   +++  +  L  +L  + +G++  G IGS V   
Sbjct: 101 VAEHTFAXILTLVKRLKRIEDRVKKLNFSQDSEI-LARELNRLTLGVIGTGRIGSRVAXY 159
Query: 98  LQAFGFIISYNSRRKRPSVLFPYC--ANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE 155
             AFG  +      KR  +    C   ++ +L   SDV+ +    T++THH IN++ ++ 
Sbjct: 160 GLAFGXKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHXINEERISL 219
Query: 156 LGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEND 196
              G  +IN  RG ++D   + +   +G  +G+GLDVFE++
Sbjct: 220 XKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDE 260

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 84/171 (49%), Gaps = 9/171 (5%)
Query: 40  DLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQ 99
           +L IGL+I   R++       ++G++ K      G +L G  +GIV  G IG++V     
Sbjct: 107 ELTIGLMIAAARKMYTSMALAKSGIFKKIE----GLELAGKTIGIVGFGRIGTKVGIIAN 162
Query: 100 AFGF-IISYN--SRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
           A G  +++Y+    R++   +     ++ +L  NSDV+ +   +++    II+      +
Sbjct: 163 AMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELM 222
Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLD 207
               +I+N  R   ++ K +L ++ +G +     DVF N+P  PKE   L+
Sbjct: 223 KDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEP--PKEEWELE 271

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 13/188 (6%)
Query: 39  ADLAIGLLIDFLRRISPGNWYVRAGLWAKTG--------DYPLGFKLGGMQVGIVRLGNI 90
           A+L   L++   RRI      ++ G W ++G        ++ +G  L G  +GI   G I
Sbjct: 112 AELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKI 171
Query: 91  GSEVLNRLQAFGFII----SYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHH 146
           G  V    +AFG  +      NS+ +  +  F    +   L   SDVL V   L ++T  
Sbjct: 172 GQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRS 231
Query: 147 IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEP-LR 205
           II    +  +    + +N  R  L++E  M+  L +G      +DVFE +P +     LR
Sbjct: 232 IITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLR 291
Query: 206 LDNIVLLP 213
           ++N +  P
Sbjct: 292 MENCICTP 299

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 25/192 (13%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGF-----KLG-------GMQVGIV 85
            +DLA+ L++   R  S   +  RA   A+TGD P  F     ++G       G  +G V
Sbjct: 117 TSDLALYLILSVFRLAS---YSERA---ARTGD-PETFNRVHLEIGKSAHNPRGHVLGAV 169
Query: 86  RLGNIGSEVLNR-LQAFGFIISY-----NSRRKRPSVLFPYCANVYDLAVNSDVLVVCCA 139
            LG I  E+  + +   G  + Y            ++      ++ +LA  SD + V   
Sbjct: 170 GLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVP 229
Query: 140 LTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNV 199
             + THH+I++   A +  G  I+N  RG +I +  ++  L  G +   GLDV E +PNV
Sbjct: 230 YMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPNV 289
Query: 200 PKEPLRLDNIVL 211
            KE + + ++ L
Sbjct: 290 SKELIEMKHVTL 301

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 8/182 (4%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+L IG L+  LR +   N     G+W K       F+  G ++GI+  G+IG+++   
Sbjct: 111 VAELVIGELLLLLRGVPEANAKAHRGVWNKLAAG--SFEARGKKLGIIGYGHIGTQLGIL 168
Query: 98  LQAFG-FIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
            ++ G ++  Y+   K P        ++ DL   SDV+ +       T +++    ++ +
Sbjct: 169 AESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLM 228
Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-----RLDNIVL 211
             G ++IN  RG ++D   +   L    + G  +DVF  +P    +P        DN++L
Sbjct: 229 KPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLL 288
Query: 212 LP 213
            P
Sbjct: 289 TP 290

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 8/182 (4%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+L IG L+  LR +   N     G+W K       F+  G ++GI+  G+IG+++   
Sbjct: 112 VAELVIGELLLLLRGVPEANAKAHRGVWNKLAAG--SFEARGKKLGIIGYGHIGTQLGIL 169
Query: 98  LQAFG-FIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
            ++ G ++  Y+   K P        ++ DL   SDV+ +       T +++    ++ +
Sbjct: 170 AESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLM 229
Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-----RLDNIVL 211
             G ++IN  RG ++D   +   L    + G  +DVF  +P    +P        DN++L
Sbjct: 230 KPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLL 289
Query: 212 LP 213
            P
Sbjct: 290 TP 291

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 8/182 (4%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+L IG L+  LR +   N     G+W K       F+  G ++GI+  G+IG+++   
Sbjct: 112 VAELVIGELLLLLRGVPEANAKAHRGVWNKLAAG--SFEARGKKLGIIGYGHIGTQLGIL 169
Query: 98  LQAFG-FIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
            ++ G ++  Y+   K P        ++ DL   SDV+ +       T +++    ++ +
Sbjct: 170 AESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLM 229
Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-----RLDNIVL 211
             G ++IN  RG ++D   +   L    + G  +DVF  +P    +P        DN++L
Sbjct: 230 KPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLL 289
Query: 212 LP 213
            P
Sbjct: 290 TP 291

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 25/192 (13%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGF-----KLG-------GMQVGIV 85
            +DLA+ L++   R  S   +  RA   A+TGD P  F     ++G       G  +G V
Sbjct: 117 TSDLALYLILSVFRLAS---YSERA---ARTGD-PETFNRVHLEIGKSAHNPRGHVLGAV 169
Query: 86  RLGNIGSEVLNR-LQAFGFIISY-----NSRRKRPSVLFPYCANVYDLAVNSDVLVVCCA 139
            LG I  E+  + +   G  + Y            ++      ++ +LA  SD + V   
Sbjct: 170 GLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVP 229
Query: 140 LTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNV 199
             + THH+I++   A +  G  I+N  RG +I +  ++  L  G +   GLDV E +P V
Sbjct: 230 YMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQV 289
Query: 200 PKEPLRLDNIVL 211
            KE + + ++ L
Sbjct: 290 SKELIEMKHVTL 301

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 25/192 (13%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGF-----KLG-------GMQVGIV 85
            +DLA+ L++   R  S   +  RA   A+TGD P  F     ++G       G  +G V
Sbjct: 117 TSDLALYLILSVFRLAS---YSERA---ARTGD-PETFNRVHLEIGKSAHNPRGHVLGAV 169
Query: 86  RLGNIGSEVLNR-LQAFGFIISY-----NSRRKRPSVLFPYCANVYDLAVNSDVLVVCCA 139
            LG I  E+  + +   G  + Y            ++      ++ +LA  SD + V   
Sbjct: 170 GLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVP 229
Query: 140 LTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNV 199
             + THH+I++   A +  G  I+N  RG +I +  ++  L  G +   GLDV E +P V
Sbjct: 230 YMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQV 289
Query: 200 PKEPLRLDNIVL 211
            KE + + ++ L
Sbjct: 290 SKELIEMKHVTL 301

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 8/182 (4%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+L IG L+  LR +   N     G+W K       F+  G ++GI+  G+IG+++   
Sbjct: 112 VAELVIGELLLLLRGVPEANAKAHRGVWNKLAAG--SFEARGKKLGIIGYGHIGTQLGIL 169
Query: 98  LQAFG-FIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
            ++ G ++  Y+   K P        ++ DL   SDV+ +       T +      ++  
Sbjct: 170 AESLGXYVYFYDIENKLPLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLX 229
Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-----RLDNIVL 211
             G ++IN  RG ++D   +   L    + G  +DVF  +P    +P        DN++L
Sbjct: 230 KPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLL 289
Query: 212 LP 213
            P
Sbjct: 290 TP 291

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 6/174 (3%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+  +  ++  +R   P +  +    W         + + G  +  +  G IG  VL R
Sbjct: 124 VAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLER 183
Query: 98  LQAFG----FIISYNS--RRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD 151
           L  F         Y +  +     V      N+ +L   +D++ V   L   T  +INK+
Sbjct: 184 LVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKE 243
Query: 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR 205
           ++++  KG  ++N  RGA+   +++   L  G + G G DV+   P     P R
Sbjct: 244 LLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWR 297

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 65  WAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLFP--YC 121
           WA T    +G ++    VG+V  G+IG   +  ++ FG  +I+Y+  R  P +     Y 
Sbjct: 136 WAPT----IGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN-PELEKKGYYV 190
Query: 122 ANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLV 181
            ++ DL   +DV+ +         H+IN + +A++ +  +I+NV RG L+D   +++ L 
Sbjct: 191 DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD 250
Query: 182 QGDINGVGLDVFEND 196
            G I G  +DV+E +
Sbjct: 251 SGKIFGYAMDVYEGE 265

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 6/174 (3%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+  +  ++  +R   P +  +    W         + + G  +  +  G IG  VL R
Sbjct: 123 VAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLER 182
Query: 98  LQAFG----FIISYNS--RRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD 151
           L  F         Y +  +     V      N+ +L   +D++ V   L   T  +INK+
Sbjct: 183 LVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKE 242
Query: 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR 205
           ++++  KG  ++N  RGA+   +++   L  G + G G DV+   P     P R
Sbjct: 243 LLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWR 296

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 65  WAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLFP--YC 121
           WA T    +G ++    VG+V  G+IG   +  ++ FG  +I+Y+  R  P +     Y 
Sbjct: 136 WAPT----IGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN-PELEKKGYYV 190
Query: 122 ANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLV 181
            ++ DL   +DV+ +         H+IN + +A++ +  +I+NV RG L+D   +++ L 
Sbjct: 191 DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD 250
Query: 182 QGDINGVGLDVFEND 196
            G I G  +DV+E +
Sbjct: 251 SGKIFGYAMDVYEGE 265

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 8/182 (4%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+L IG L+  LR +   N     G+  K       F+  G ++GI+  G+IG+++   
Sbjct: 106 VAELVIGELLLLLRGVPEANAKAHRGVGNKLAAG--SFEARGKKLGIIGYGHIGTQLGIL 163
Query: 98  LQAFG-FIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
            ++ G ++  Y+   K P        ++ DL   SDV+ +       T +      ++  
Sbjct: 164 AESLGXYVYFYDIENKLPLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLX 223
Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-----RLDNIVL 211
             G ++IN  RG ++D   +   L    + G  +DVF  +P    +P        DN++L
Sbjct: 224 KPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLL 283
Query: 212 LP 213
            P
Sbjct: 284 TP 285

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 8/135 (5%)
Query: 65  WAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLFP--YC 121
           WA T    +G ++    VG+V  G+IG   +  ++ FG  +I+Y+   K P +     Y 
Sbjct: 136 WAPT----IGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIF-KNPELEKKGYYV 190
Query: 122 ANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLV 181
            ++ DL   +DV+ +         H+IN   +AE+  G +I+N  RG L+D   +++ L 
Sbjct: 191 DSLDDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLD 250
Query: 182 QGDINGVGLDVFEND 196
            G I G  +D +E++
Sbjct: 251 SGKIFGFVMDTYEDE 265

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 15/149 (10%)
Query: 80  MQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCC 138
           + VG++ +G+IGS V     A G  +I+Y+         F    +   +   +D++ +  
Sbjct: 149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHT 208
Query: 139 ALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE---- 194
            L   T ++I +  + E+ K   +IN  RG L+D   +++ L  G+I G GLD       
Sbjct: 209 PLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESS 268
Query: 195 -------NDPNVP---KEPLRLDNIVLLP 213
                   D  +P   K   ++ N+V+ P
Sbjct: 269 YFGHTGLTDSEIPEDYKTLAKMPNVVITP 297

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 77  LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYC---ANVYDLAVNSDV 133
           L G Q+ I   G IG  +  +  A G  +   +    P+  F          D    ++ 
Sbjct: 135 LTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANF 194
Query: 134 LVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVF 193
           +V    LT  THH+ + ++  +  +  M+IN+GRG  +D   ++  L    ++   LDV 
Sbjct: 195 IVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVT 254
Query: 194 ENDPNVPKEPL-RLDNIVLLP 213
           E +P     PL + D++++ P
Sbjct: 255 EPEPLPTDHPLWQRDDVLITP 275

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 74  GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDV 133
           GF L    +GIV +GN+GS +  RL+A G         +           + +L   +DV
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADV 173
Query: 134 LVVCCALTE----QTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVG 189
           L     L +    +T H+ ++ ++  L  G ++IN  RG ++D   +L  L  G    V 
Sbjct: 174 LTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVV 233
Query: 190 LDVFENDPNV 199
           LDV+E +P++
Sbjct: 234 LDVWEGEPDL 243

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 83/192 (43%), Gaps = 28/192 (14%)
Query: 27  KSIAKQADLPI----------VADLAIGLLIDFLR-------RISPGNWYVRAGLWAKTG 69
           K  AK+   P+          +A+LA+   +  LR       R +  N+ V A +++K  
Sbjct: 85  KEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSK-- 142
Query: 70  DYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVY--DL 127
                 ++    VG+V LG IG          G  +      +   +   YC  V   ++
Sbjct: 143 ------EVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIE-DYCTQVSLDEV 195
Query: 128 AVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDING 187
              SD++ +     ++   ++ +D + ++  G +++N  RG L+D + +++ +  G + G
Sbjct: 196 LEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGG 255
Query: 188 VGLDVFENDPNV 199
            G DV + + +V
Sbjct: 256 YGCDVLDGEASV 267

>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 6/176 (3%)
Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+ A  LL+   + I   N   +AG++ ++   P    L G  +GI+  G IG  V + 
Sbjct: 85  VAEHAFALLLAHAKNILENNELXKAGIFRQS---PTTL-LYGKALGILGYGGIGRRVAHL 140
Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
            +AFG  +   +R      +     +  DL   SD +++   LT++T   +N  ++A   
Sbjct: 141 AKAFGXRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGXVNSRLLANAR 200
Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
           K   I+NV R  ++ + + + FL +        DV+ N+P + +  LR  N +L P
Sbjct: 201 KNLTIVNVARADVVSKPDXIGFLKERSDVWYLSDVWWNEPEITETNLR--NAILSP 254

>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 144 THHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKE 202
           T H++++  +A L  G  ++N  RGA++D + + + L  G    V LDV+E +P    E
Sbjct: 185 TRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPE 243

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	223
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	2e-75
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	5e-74
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	3e-59
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	3e-55
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	4e-53
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	1e-52
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	1e-51
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	2e-51
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	1e-50
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	9e-49
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	9e-47
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	1e-45
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	4e-45
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	2e-44
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	1e-43
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	1e-41
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	4e-40
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	6e-40
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	4e-39
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	3e-37
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	3e-37
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	5e-37
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	4e-36
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	1e-35
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	2e-35
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	2e-35
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	2e-34
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	4e-34
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	4e-33
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	3e-32
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	6e-30
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	6e-28
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	4e-07

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  230 bits (588), Expect = 2e-75
 Identities = 68/176 (38%), Positives = 101/176 (57%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VADL I L++  LRR+  G+  VR G WA     PLG    G ++G++ LG IG  + +R
Sbjct: 130 VADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASR 189

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
            +AFG  + Y +R     V +    +  DLA +SDVL VC A +  T +I++  ++  LG
Sbjct: 190 AEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALG 249

Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
             G+++NV RG ++DE  +++ L  G I G GLDVF N+P +  E     N VL+P
Sbjct: 250 PEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMP 305

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  226 bits (578), Expect = 5e-74
 Identities = 90/176 (51%), Positives = 120/176 (68%), Gaps = 1/176 (0%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VADLAIGL++  LRRI   + YVR G W K GD+ L  K  G +VGI+ LG IG  V  R
Sbjct: 124 VADLAIGLILAVLRRICECDKYVRRGAW-KFGDFKLTTKFSGKRVGIIGLGRIGLAVAER 182

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
            +AF   ISY SR K+P+  + Y  +V +LA NSD+LVV C LT +T HIIN++V+  LG
Sbjct: 183 AEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALG 242

Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
             G++IN+GRG  +DE E++  LV+G + G GLDVFE +P VP++   L+N+VLLP
Sbjct: 243 PKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLP 298

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  188 bits (481), Expect = 3e-59
 Identities = 52/180 (28%), Positives = 90/180 (50%), Gaps = 4/180 (2%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAK-TGDYPLGFKLGGMQVGIVRLGNIGSEVLN 96
            A++A+ L+++  RR    +  VR+G W        LG  L G ++GI  +G IG  +  
Sbjct: 131 CAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIAT 190

Query: 97  RLQAFGFIISYNSRRKRPSVLFP---YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153
           R + FG  I Y++R +    L     Y   +  L   SD+ ++      +    ++ D +
Sbjct: 191 RARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRI 250

Query: 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
           A++ +G ++IN+ RG LI++  +++ L    +   GLDVF N+P +      LDNI L P
Sbjct: 251 AKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTP 310

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  178 bits (454), Expect = 3e-55
 Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 11/187 (5%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDY-----PLGFKLGGMQVGIVRLGNIGS 92
            +DLA+ L++   R  S      R G                    G  +G V LG I  
Sbjct: 117 TSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQK 176

Query: 93  EVLNR-LQAFGFIISYNSRRKRPSVLFP-----YCANVYDLAVNSDVLVVCCALTEQTHH 146
           E+  + +   G  + Y       +            ++ +LA  SD + V     + THH
Sbjct: 177 EIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHH 236

Query: 147 IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRL 206
           +I++   A +  G  I+N  RG +I +  ++  L  G +   GLDV E +P V KE + +
Sbjct: 237 LIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEM 296

Query: 207 DNIVLLP 213
            ++ L  
Sbjct: 297 KHVTLTT 303

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  172 bits (438), Expect = 4e-53
 Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 6/182 (3%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTG-DYPLGFKLGGMQVGIVRLGNIGSEVLN 96
            A++A+ LL+   RR   G   +R   W        +G KL    +GI   G+IG  +  
Sbjct: 104 TAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAK 163

Query: 97  RLQAFGFIISYNSRRKRPSVLFP-----YCANVYDLAVNSDVLVVCCALTEQTHHIINKD 151
           R Q F   I Y    +  S         +  ++  L   S    +    T +T +  NK 
Sbjct: 164 RAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKA 223

Query: 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVL 211
            +  L +G +++N  RG L+D + ++  L  G +   G DVF  +PN+ +    L N  L
Sbjct: 224 TIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFL 283

Query: 212 LP 213
            P
Sbjct: 284 FP 285

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  171 bits (436), Expect = 1e-52
 Identities = 66/184 (35%), Positives = 103/184 (55%), Gaps = 8/184 (4%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTG-----DYPLGFKLGGMQVGIVRLGNIGS 92
            ADLA  LL+   R +  G+ +VR+G W K G      + LG+ + G  +GI+ LG IG 
Sbjct: 104 TADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQ 163

Query: 93  EVLNRLQAFGFIISYNSRRKRPSVLFPYCA---NVYDLAVNSDVLVVCCALTEQTHHIIN 149
            +  R + F   I Y SR ++  V     A    + DL   SD +V+   LT +T+H+IN
Sbjct: 164 AIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLIN 223

Query: 150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNI 209
           ++ +  + K  ++IN+ RG ++D   +++ L +G I G GLDVFE +P   +E  +LDN+
Sbjct: 224 EERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNV 283

Query: 210 VLLP 213
           VL P
Sbjct: 284 VLTP 287

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  168 bits (429), Expect = 1e-51
 Identities = 61/182 (33%), Positives = 91/182 (50%), Gaps = 6/182 (3%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAK-TGDYPLGFKLGGMQVGIVRLGNIGSEVLN 96
            A+LA+ LL+   RR+      V+ G W      +  G+ L    VGI+ LG IG  +  
Sbjct: 113 TAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIAR 172

Query: 97  RLQAFGF-IISYNSRRKRPSVLFPYCA---NVYDLAVNSDVLVVCCALTEQTHHIINKDV 152
           RL+ FG     Y  R+ RP     + A   +  +LA  SD +VV C+LT  T  + NKD 
Sbjct: 173 RLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDF 232

Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR-LDNIVL 211
             ++ +  + IN+ RG ++++ ++ Q L  G I   GLDV   +P     PL  L N V+
Sbjct: 233 FQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVI 292

Query: 212 LP 213
           LP
Sbjct: 293 LP 294

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  167 bits (426), Expect = 2e-51
 Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 6/178 (3%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+ A+ LL+   +RI      ++ G + +  +      + G +V ++ LG IG+ V   
Sbjct: 86  VAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE---IPLIQGEKVAVLGLGEIGTRVGKI 142

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
           L A G  +   SR  +    + +  ++ +    +   V    L + T  ++    +A + 
Sbjct: 143 LAALGAQVRGFSRTPKEGP-WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMA 201

Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEP--LRLDNIVLLP 213
           +  + +NVGR  ++D   +L+ L +        DV+    +  K+     L N+V  P
Sbjct: 202 EDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATP 259

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  165 bits (421), Expect = 1e-50
 Identities = 61/178 (34%), Positives = 103/178 (57%), Gaps = 5/178 (2%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAK-TGDYPLGFKLGGMQVGIVRLGNIGSEVLN 96
            ADL + LL+   RR+  G  Y R GLW     +  LG  L G+ +G+V +G IG  V  
Sbjct: 102 TADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAK 161

Query: 97  RLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
           R  AFG  + Y++R  +P + +P+  ++ +L   +DV+ +   LT +TH ++N++ +  +
Sbjct: 162 RALAFGMRVVYHARTPKP-LPYPFL-SLEELLKEADVVSLHTPLTPETHRLLNRERLFAM 219

Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR-LDNIVLLP 213
            +G +++N  RGAL+D + +++ L +G + G GLDV + +P  P  PL  L N V+ P
Sbjct: 220 KRGAILLNTARGALVDTEALVEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITP 276

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  163 bits (414), Expect = 9e-49
 Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 6/182 (3%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+  + +++  +R   P + + R G W         + L  M VG V  G IG  VL R
Sbjct: 150 VAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRR 209

Query: 98  LQAFGFIISYNSRRKRPSVLFP-----YCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152
           L  F   + Y  R + P  +       + A   D+    DV+ + C L  +T H+IN + 
Sbjct: 210 LAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDET 269

Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR-LDNIVL 211
           +    +G  I+N  RG L D   + + L  G + G   DV+   P     P R +    +
Sbjct: 270 LKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM 329

Query: 212 LP 213
            P
Sbjct: 330 TP 331

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  156 bits (396), Expect = 9e-47
 Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 12/188 (6%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
            A+LAIGL +   R +   + +VR+G +        G  L    VG + +G IG  + +R
Sbjct: 104 TAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADR 163

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVY----DLAVNSDVLVVCCALTEQTHHIINKDVM 153
           LQ +G  + Y+  +   +              +L  +SD +++   L   T H++N +++
Sbjct: 164 LQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELL 223

Query: 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEN--------DPNVPKEPLR 205
           A +  G +++N  RG+++DE  +L  L +G + G   DVFE            +    L 
Sbjct: 224 ALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLA 283

Query: 206 LDNIVLLP 213
             N +  P
Sbjct: 284 HPNTLFTP 291

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  153 bits (390), Expect = 1e-45
 Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 6/182 (3%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+  +  ++  +R   PG   V  G W   G     + L G  +G V  G IG  +L R
Sbjct: 123 VAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQR 182

Query: 98  LQAFGFIISYNSRRKRPSVLFP-----YCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152
           L+ FG  + Y+ R +    L       +  ++ ++    DV+V+   LTE+T  + NK++
Sbjct: 183 LKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKEL 242

Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR-LDNIVL 211
           + +L KG +I+N  RGA+++ + ++  +  G I G   DV++  P     P R + N  +
Sbjct: 243 IGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAM 302

Query: 212 LP 213
            P
Sbjct: 303 TP 304

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  151 bits (383), Expect = 4e-45
 Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 6/176 (3%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+ A  LL+   + I   N  ++AG++ ++        L G  +GI+  G IG  V + 
Sbjct: 85  VAEHAFALLLAHAKNILENNELMKAGIFRQS----PTTLLYGKALGILGYGGIGRRVAHL 140

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
            +AFG  +   +R      +     +  DL   SD +++   LT++T  ++N  ++A   
Sbjct: 141 AKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANAR 200

Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
           K   I+NV R  ++ + +M+ FL +        DV+ N+P + +    L N +L P
Sbjct: 201 KNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETN--LRNAILSP 254

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  150 bits (380), Expect = 2e-44
 Identities = 62/184 (33%), Positives = 101/184 (54%), Gaps = 9/184 (4%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG----GMQVGIVRLGNIGSE 93
           VA+  +GL+I+ +R+I   + ++R G W        GFK      G +VGI+ +G IG  
Sbjct: 101 VAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKA 160

Query: 94  VLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLA---VNSDVLVVCCALTEQTHHIINK 150
           +  RL  FG  + Y SR ++ +V     A   D+      SD++++   LT  T+HIIN+
Sbjct: 161 IARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINE 220

Query: 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLD-NI 209
           + + +L +G  ++N+GRGAL+DEK + + + QG + G   DVFE +P    E  + +   
Sbjct: 221 ERVKKL-EGKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWET 279

Query: 210 VLLP 213
           VL P
Sbjct: 280 VLTP 283

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  148 bits (376), Expect = 1e-43
 Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQV-----GIVRLGNIGS 92
            AD  +  +++  RR +  +  +R G   ++ +       G  ++     GI+ LG +G 
Sbjct: 122 TADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQ 181

Query: 93  EVLNRLQAFGFIISYNSRRKRPSVL----FPYCANVYDLAVNSDVLVVCCALTEQTHHII 148
            V  R +AFGF + +        V         + + DL  +SD + + C L E  HH+I
Sbjct: 182 AVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLI 241

Query: 149 NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKE-PLR-L 206
           N   + ++ +G  ++N  RG L+DEK + Q L +G I G  LDV E++P    + PL+  
Sbjct: 242 NDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDA 301

Query: 207 DNIVLLP 213
            N++  P
Sbjct: 302 PNLICTP 308

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  143 bits (364), Expect = 1e-41
 Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 9/189 (4%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+  +  ++  +R   P +  +    W         + + G  +  +  G IG  VL R
Sbjct: 123 VAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLER 182

Query: 98  LQAFGF-IISYNSRRKRPSVLFP-----YCANVYDLAVNSDVLVVCCALTEQTHHIINKD 151
           L  F    + Y   +  P             N+ +L   +D++ V   L   T  +INK+
Sbjct: 183 LVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKE 242

Query: 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR-LDNIV 210
           ++++  KG  ++N  RGA+   +++   L  G + G G DV+   P     P R + N  
Sbjct: 243 LLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNK- 301

Query: 211 LLPCQNALT 219
                NA+T
Sbjct: 302 -YGAGNAMT 309

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  138 bits (351), Expect = 4e-40
 Identities = 37/184 (20%), Positives = 75/184 (40%), Gaps = 14/184 (7%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           +++  +  ++  +R         R               L G Q+ I   G IG  +  +
Sbjct: 98  ISESVLAAMLSVVRGYHAAWLNQRGARQWA--LPMTTSTLTGQQLLIYGTGQIGQSLAAK 155

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVY------DLAVNSDVLVVCCALTEQTHHIINKD 151
             A G  +   +    P+    +           D    ++ +V    LT  THH+ + +
Sbjct: 156 ASALGMHVIGVNTTGHPA---DHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTE 212

Query: 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKE-PL-RLDNI 209
           +  +  +  M+IN+GRG  +D   ++  L    ++   LDV E +P +P + PL + D++
Sbjct: 213 LFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEP-LPTDHPLWQRDDV 271

Query: 210 VLLP 213
           ++ P
Sbjct: 272 LITP 275

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  138 bits (349), Expect = 6e-40
 Identities = 63/183 (34%), Positives = 100/183 (54%), Gaps = 12/183 (6%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+LA+GL+    R+I+  +  +R G+WAK  +  +G +L G  +GI+  G IG +V   
Sbjct: 103 VAELAVGLMFSVARKIAFADRKMREGVWAKK-EA-MGIELEGKTIGIIGFGRIGYQVAKI 160

Query: 98  LQAFGF-IISY-----NSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD 151
             A G  I+ Y       R K  +  F    ++  L   SDV+ +   L E T+H+IN++
Sbjct: 161 ANALGMNILLYDPYPNEERAKEVNGKF---VDLETLLKESDVVTIHVPLVESTYHLINEE 217

Query: 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-RLDNIV 210
            +  + K  ++IN  RG ++D   +++ L +G I G GLDVFE +P     PL + DN+V
Sbjct: 218 RLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVV 277

Query: 211 LLP 213
           L P
Sbjct: 278 LTP 280

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  135 bits (341), Expect = 3e-37
 Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 11/182 (6%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
            A+ A+ LL+   R+I   +  +R   W +   +  G ++ G  VG+V LG IG  V  R
Sbjct: 103 AAEHALALLLAASRQIPAADASLREHTWKR-SSF-SGTEIFGKTVGVVGLGRIGQLVAQR 160

Query: 98  LQAFG-FIISY-----NSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD 151
           + AFG ++++Y      +R  +  +      ++ DL   +D + V    T +T  +I+K+
Sbjct: 161 IAAFGAYVVAYDPYVSPARAAQLGIEL---LSLDDLLARADFISVHLPKTPETAGLIDKE 217

Query: 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVL 211
            +A+   G +I+N  RG L+DE  +   +  G +   GLDVF  +P        L  +V+
Sbjct: 218 ALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVV 277

Query: 212 LP 213
            P
Sbjct: 278 TP 279

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  131 bits (332), Expect = 3e-37
 Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 11/182 (6%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
            A+L  G+++   R+I      ++ G W +   + +G +L G  +GI+ LG IG EV  R
Sbjct: 126 AAELTCGMIMCLARQIPQATASMKDGKWER-KKF-MGTELNGKTLGILGLGRIGREVATR 183

Query: 98  LQAFGF-IISY-----NSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD 151
           +Q+FG   I Y             V       + ++    D + V   L   T  ++N +
Sbjct: 184 MQSFGMKTIGYDPIISPEVSASFGVQQ---LPLEEIWPLCDFITVHTPLLPSTTGLLNDN 240

Query: 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVL 211
             A+  KG  ++N  RG ++DE  +L+ L  G   G  LDVF  +P   +  +  +N++ 
Sbjct: 241 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVIS 300

Query: 212 LP 213
            P
Sbjct: 301 CP 302

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  131 bits (332), Expect = 5e-37
 Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 13/189 (6%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDY--------PLGFKLGGMQVGIVRLGN 89
            A+L   L++   RRI      ++ G W ++G           +G  L G  +GI   G 
Sbjct: 111 PAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGK 170

Query: 90  IGSEVLNRLQAFGF-IISYNSRRKRP---SVLFPYCANVYDLAVNSDVLVVCCALTEQTH 145
           IG  V    +AFG  ++ +     +    +  F    +   L   SDVL V   L ++T 
Sbjct: 171 IGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETR 230

Query: 146 HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR 205
            II    +  +    + +N  R  L++E  M+  L +G      +DVFE +P +    L 
Sbjct: 231 SIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLL 290

Query: 206 -LDNIVLLP 213
            ++N +  P
Sbjct: 291 RMENCICTP 299

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  128 bits (324), Expect = 4e-36
 Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 2/173 (1%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           +A+ A+   +  LR +      ++AG + K G + +G +LG   VG++  G+IG   +  
Sbjct: 105 IAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF-IGKELGQQTVGVMGTGHIGQVAIKL 163

Query: 98  LQAFGF-IISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
            + FG  +I+Y+    +         ++ DL   SDV+ +     EQ  HIIN+     +
Sbjct: 164 FKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLM 223

Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNI 209
             G ++IN  R  LID + ML  L  G + GVG+D +E +        +  + 
Sbjct: 224 KPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSF 276

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  127 bits (322), Expect = 1e-35
 Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 18/199 (9%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           +A+ A       LR+    +  V            +G ++    VG+V  G+IG   +  
Sbjct: 107 IAEHAAIQAARILRQDKAMDEKVARHDLRWAPT--IGREVRDQVVGVVGTGHIGQVFMQI 164

Query: 98  LQAFGFIISYNSRRKRPSV--LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE 155
           ++ FG  +      + P +     Y  ++ DL   +DV+ +         H+IN + +A+
Sbjct: 165 MEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAK 224

Query: 156 LGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEP------------ 203
           + +  +I+NV RG L+D   +++ L  G I G  +DV+E +  +  E             
Sbjct: 225 MKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLA 284

Query: 204 --LRLDNIVLLPCQNALTH 220
             +   N+++ P     T 
Sbjct: 285 DLIARPNVLVTPKTAFYTT 303

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  126 bits (319), Expect = 2e-35
 Identities = 41/185 (22%), Positives = 85/185 (45%), Gaps = 16/185 (8%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
             +L IGL+I   R++       ++G++ K      G +L G  +GIV  G IG++V   
Sbjct: 105 AVELTIGLMIAAARKMYTSMALAKSGIFKKI----EGLELAGKTIGIVGFGRIGTKVGII 160

Query: 98  LQAFGF-IISY-----NSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD 151
             A G  +++Y       + ++ +       ++ +L  NSDV+ +   +++    II+  
Sbjct: 161 ANAMGMKVLAYDILDIREKAEKINAKA---VSLEELLKNSDVISLHVTVSKDAKPIIDYP 217

Query: 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP---NVPKEPLRLDN 208
               +    +I+N  R   ++ K +L ++ +G +     DVF N+P       E L+ + 
Sbjct: 218 QFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHER 277

Query: 209 IVLLP 213
           +++  
Sbjct: 278 VIVTT 282

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  126 bits (320), Expect = 2e-35
 Identities = 30/173 (17%), Positives = 73/173 (42%), Gaps = 2/173 (1%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           +A+LA+   +  LR  +          +          ++    VG+V LG IG      
Sbjct: 106 IAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFM-FSKEVRNCTVGVVGLGRIGRVAAQI 164

Query: 98  LQAFGF-IISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
               G  +I  +    +    +    ++ ++   SD++ +     ++   ++ +D + ++
Sbjct: 165 FHGMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKM 224

Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNI 209
             G +++N  RG L+D + +++ +  G + G G DV + + +V  + L    +
Sbjct: 225 KDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKL 277

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  125 bits (316), Expect = 2e-34
 Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 8/182 (4%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+L IG L+  LR +   N     G+  K       F+  G ++GI+  G+IG+++   
Sbjct: 106 VAELVIGELLLLLRGVPEANAKAHRGVGNKLAA--GSFEARGKKLGIIGYGHIGTQLGIL 163

Query: 98  LQAFGF-IISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
            ++ G  +  Y+   K P        ++ DL   SDV+ +       T +++    ++ +
Sbjct: 164 AESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLM 223

Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKE----PLR-LDNIVL 211
             G ++IN  RG ++D   +   L    + G  +DVF  +P    +    PL   DN++L
Sbjct: 224 KPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLL 283

Query: 212 LP 213
            P
Sbjct: 284 TP 285

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  123 bits (310), Expect = 4e-34
 Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 16/194 (8%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           +++   G L+  +R++       +  LW       L     G  + I+  G+IG  + + 
Sbjct: 103 MSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQGLK----GRTLLILGTGSIGQHIAHT 158

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVY------DLAVNSDVLVVCCALTEQTHHIINKD 151
            + FG  +   SR  R          VY       +   +DV+V     T +THH+    
Sbjct: 159 GKHFGMKVLGVSRSGRER---AGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTAS 215

Query: 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKE-PL-RLDNI 209
                  G ++ NVGRG  I+E ++L  L  G +    LDVFE +P +P + PL    N+
Sbjct: 216 RFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEP-LPADSPLWGQPNL 274

Query: 210 VLLPCQNALTHWES 223
           ++ P  +A +  + 
Sbjct: 275 IITPHNSAYSFPDD 288

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  120 bits (303), Expect = 4e-33
 Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 16/184 (8%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           + + A+  ++ + RR           LW    +Y          VGI+  G +G++V   
Sbjct: 102 MQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTRE----EFSVGIMGAGVLGAKVAES 157

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVY------DLAVNSDVLVVCCALTEQTHHIINKD 151
           LQA+GF +   SR ++     P   +             + VL+     T QT  IIN +
Sbjct: 158 LQAWGFPLRCWSRSRKSW---PGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSE 214

Query: 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKE-PL-RLDNI 209
           ++ +L  G  ++N+ RG  + E ++L  L  G + G  LDVF  +P +P+E PL R   +
Sbjct: 215 LLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEP-LPQESPLWRHPRV 273

Query: 210 VLLP 213
            + P
Sbjct: 274 AMTP 277

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  120 bits (302), Expect = 3e-32
 Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 8/182 (4%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+L IG +I  +RRI P +    AG W KT       ++ G  +GIV  GNIGS+V N 
Sbjct: 117 VAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAI--GSREVRGKTLGIVGYGNIGSQVGNL 174

Query: 98  LQAFGF-IISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
            ++ G  +  Y++  K         A++ +L   SDV+ +    ++ T  +I +  + ++
Sbjct: 175 AESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKM 234

Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKE----PLR-LDNIVL 211
            KG  +IN  RG+ +D + + + L +G + G  +DVF  +P    E    PL+ L+N++L
Sbjct: 235 KKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVIL 294

Query: 212 LP 213
            P
Sbjct: 295 TP 296

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  113 bits (284), Expect = 6e-30
 Identities = 42/177 (23%), Positives = 70/177 (39%), Gaps = 24/177 (13%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           V +     L+    R                     GF L    +GIV +GN+GS +  R
Sbjct: 98  VVEYVFSALLMLAER--------------------DGFSLRDRTIGIVGVGNVGSRLQTR 137

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTE----QTHHIINKDVM 153
           L+A G         +           + +L   +DVL     L +    +T H+ ++ ++
Sbjct: 138 LEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLI 197

Query: 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIV 210
             L  G ++IN  RG ++D   +L  L  G    V LDV+E +P++    L   +I 
Sbjct: 198 RRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVDIG 254

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  107 bits (270), Expect = 6e-28
 Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 25/180 (13%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           V D  +G L+                          G  L     G+V  G +G  ++  
Sbjct: 95  VVDYVLGCLLAMAEV--------------------RGADLAERTYGVVGAGQVGGRLVEV 134

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQ----THHIINKDVM 153
           L+  G+ +      ++         ++  L   +DV+ +   L       T H++++  +
Sbjct: 135 LRGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRL 194

Query: 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
           A L  G  ++N  RGA++D + + + L  G    V LDV+E +P    E L    ++  P
Sbjct: 195 AALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPE-LAARCLIATP 253

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 48.4 bits (115), Expect = 4e-07
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 12/102 (11%)

Query: 74  GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFP-------YCANVYD 126
            F + G  V ++ LG +G  V  +  A G  +   +R                + +    
Sbjct: 150 DFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQ 209

Query: 127 LAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRG 168
              + DV +           ++  +V+AE+     +I++   
Sbjct: 210 ELRDVDVCINTI-----PALVVTANVLAEMPSHTFVIDLASK 246

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.98
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.98
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.91
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.88
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.84
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.84
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.82
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.73
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.71
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.7
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.69
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.65
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.59
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.58
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.55
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.54
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.52
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.5
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.5
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.5
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.47
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.46
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.45
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.43
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.43
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.42
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.4
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.39
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.39
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.38
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.34
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.33
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.3
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.29
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.28
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.27
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.26
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.25
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.24
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.24
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.23
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.22
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.21
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.21
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.2
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.17
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.16
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.16
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.16
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.14
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.14
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.11
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.1
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.09
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.09
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.68
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.09
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.06
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.06
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	99.04
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.03
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.98
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.97
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.97
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.96
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.94
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.92
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.91
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.9
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.9
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.89
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.89
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.88
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.87
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.87
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.84
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.83
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.82
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.81
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.8
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.78
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.77
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.76
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.74
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.74
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.71
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.7
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.68
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.67
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.67
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.67
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.66
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.65
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.64
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.64
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.64
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.64
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.63
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.63
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.62
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.62
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.62
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.62
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.62
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.61
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.6
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.6
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.59
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	98.59
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.58
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.57
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.56
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.55
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.55
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.49
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.44
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.37
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.37
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.36
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	98.35
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	98.35
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.35
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.34
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.34
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.29
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.29
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	98.28
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.26
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.24
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.24
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	98.22
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.21
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	98.2
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.2
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.19
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.19
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	98.15
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	98.12
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	98.1
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.09
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	98.09
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.08
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	98.08
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.07
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.07
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.06
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	98.05
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	98.04
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.03
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.99
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	97.96
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.92
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.92
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.92
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.9
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.89
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.89
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.87
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.86
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.86
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.85
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.84
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.84
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.83
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.83
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.83
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.82
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.82
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.81
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.81
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.8
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.79
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.79
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.78
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.78
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.75
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.74
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.72
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.71
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.7
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.68
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.68
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.67
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.67
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.67
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.66
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.64
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	97.63
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	97.63
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.61
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.61
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	97.59
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.56
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.56
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.54
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.54
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.53
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	97.52
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	97.51
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.47
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.46
1ydw_A	362	AX110P-like protein; structural genomics, protein	97.46
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	97.45
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	97.45
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	97.44
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.44
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	97.43
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	97.42
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	97.41
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.41
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	97.4
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.38
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	97.37
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	97.37
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	97.37
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	97.36
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	97.36
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.35
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	97.35
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.35
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.35
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	97.33
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	97.33
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.33
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	97.31
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.29
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.29
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	97.28
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	97.28
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	97.28
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	97.27
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	97.26
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	97.26
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	97.25
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	97.25
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	97.22
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	97.21
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	97.21
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.2
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	97.2
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	97.2
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	97.2
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	97.19
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	97.18
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	97.18
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	97.17
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.16
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	97.15
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	97.15
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	97.13
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	97.13
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	97.11
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	97.11
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	97.1
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	97.09
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	97.08
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	97.08
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	97.07
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.07
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	97.07
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.05
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	97.05
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	97.04
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	97.04
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	97.04
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	97.03
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.02
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.02
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.02
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	97.01
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	97.01
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	97.01
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	97.01
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	97.0
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.98
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	96.95
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	96.94
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.94
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.94
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	96.94
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	96.93
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.93
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.93
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.93
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.93
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.92
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.91
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.91
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	96.89
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.88
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	96.88
4had_A	350	Probable oxidoreductase protein; structural genomi	96.88
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.83
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	96.82
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.81
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	96.8
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	96.79
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	96.78
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	96.78
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.77
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	96.77
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.77
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.76
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.76
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	96.74
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	96.73
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.72
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.72
3on5_A	362	BH1974 protein; structural genomics, joint center	96.72
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.72
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.71
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.71
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	96.71
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	96.69
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	96.69
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	96.69
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	96.69
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	96.69
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.68
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.66
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	96.63
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	96.63
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.62
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.62
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	96.61
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	96.6
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	96.6
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	96.56
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	96.55
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.53
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	96.51
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	96.5
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	96.5
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.5
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.5
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.49
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.49
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.48
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	96.47
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.46
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	96.45
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	96.45
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.45
4h3v_A	390	Oxidoreductase domain protein; structural genomics	96.44
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.42
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	96.41
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.39
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.39
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.37
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.37
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	96.36
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.36
2csu_A	457	457AA long hypothetical protein; structural genomi	96.36
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.36
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	96.34
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	96.33
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	96.32
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	96.32
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.32
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	96.31
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.3
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.3
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	96.3
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.29
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	96.29
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.29
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	96.29
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.28
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	96.28
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	96.28
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.26
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	96.26
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.24
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	96.21
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	96.21
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.19
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	96.19
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.18
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.18
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	96.18
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.16
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.16
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	96.16
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.15
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	96.15
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	96.14
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.14
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	96.14
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.14
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.13
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	96.13
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	96.11
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	96.11
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.1
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	96.09
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	96.09
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	96.09
1lnq_A	336	MTHK channels, potassium channel related protein;	96.09
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.07
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	96.06
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	96.04
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	96.04
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.03
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.03
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	96.03
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.02
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	96.02
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	96.01
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	96.01
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	96.01
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.99
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.99
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	95.98
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.97
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.96
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	95.95
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	95.92
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	95.91
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	95.89
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.87
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	95.86
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.85
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.84
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.84
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	95.84
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.83
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	95.83
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	95.82
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	95.81
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	95.8
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	95.8
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	95.79
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	95.76
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	95.76
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	95.75
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.73
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	95.72
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	95.71
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	95.7
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	95.66
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.64
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	95.63
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	95.62
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	95.61
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	95.6
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	95.59
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	95.59
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	95.58
3kzn_A	359	Aotcase, N-acetylornithine carbamoyltransferase; t	95.58
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	95.57
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	95.55
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	95.54
3q98_A	399	Transcarbamylase; rossmann fold, transferase; 2.00	95.54
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	95.54
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.53
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.53
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.53
3gms_A	340	Putative NADPH:quinone reductase; structural genom	95.53
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	95.51
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	95.49
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	95.49
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	95.47
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	95.47
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.44

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=2.6e-64  Score=441.35  Aligned_cols=219  Identities=23%  Similarity=0.321  Sum_probs=201.5

Q ss_pred             CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCcccc
Q 035615            2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKL   77 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l   77 (223)
                      .+|+||||++.++|+||||+++++++||    +||+++.+||||+++++|++.|++..+++.++++.|..... ..+.+|
T Consensus        61 ~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~-~~~~~l  139 (334)
T 3kb6_A           61 KMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSE-ILAREL  139 (334)
T ss_dssp             TCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGG-GCBCCG
T ss_pred             cCCCCcEEEECCcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhccccccccccccccccccc-ccccee
Confidence            3799999999999999999999999998    69999999999999999999999999999999999875432 257899


Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC--CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhc
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV--LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE  155 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~  155 (223)
                      +|+|+||||+|+||+.+|+++++|||+|++||+......  ....+.+++|++++||+|++|+|+|++|+++||++.|++
T Consensus       140 ~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~  219 (334)
T 3kb6_A          140 NRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISL  219 (334)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHH
T ss_pred             cCcEEEEECcchHHHHHHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhh
Confidence            999999999999999999999999999999998765421  233467999999999999999999999999999999999


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC----------------CCCCCCceEEccCCCCCC
Q 035615          156 LGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK----------------EPLRLDNIVLLPCQNALT  219 (223)
Q Consensus       156 mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~----------------~l~~~~nv~~TPH~a~~t  219 (223)
                      ||+|++|||+|||++||++||++||++|+|+||+||||++||++.+                |||.+|||++|||+||+|
T Consensus       220 mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~T  299 (334)
T 3kb6_A          220 MKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYT  299 (334)
T ss_dssp             SCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEEECCSCTTCB
T ss_pred             cCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccccchhhccCCCEEECCchhhCh
Confidence            9999999999999999999999999999999999999999997421                588999999999999999


Q ss_pred             CC
Q 035615          220 HW  221 (223)
Q Consensus       220 ~~  221 (223)
                      .|
T Consensus       300 ~e  301 (334)
T 3kb6_A          300 DK  301 (334)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=7.5e-62  Score=426.82  Aligned_cols=219  Identities=26%  Similarity=0.417  Sum_probs=202.4

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCC-CCCCcccc
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTG-DYPLGFKL   77 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~-~~~~~~~l   77 (223)
                      .|+||||++.++|+||||+++++++||    +||+++.+||||+++++|++.|++..+++.+++|.|.... ....+.+|
T Consensus        92 ~~~Lk~I~~~~~G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l  171 (345)
T 4g2n_A           92 QPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGL  171 (345)
T ss_dssp             TTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCC
T ss_pred             cCCceEEEEcCCcccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCccccccccc
Confidence            379999999999999999999999999    6999999999999999999999999999999999997532 12357899


Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC---CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS---VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA  154 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~  154 (223)
                      +|+||||||+|+||+.+|+++++|||+|++|||++...   .+.....++++++++||+|++|+|++++|+++|+++.|+
T Consensus       172 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~  251 (345)
T 4g2n_A          172 TGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIA  251 (345)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHH
T ss_pred             CCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHh
Confidence            99999999999999999999999999999999986432   133444699999999999999999999999999999999


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615          155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       155 ~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      .||+|++|||+|||+++|++||+++|++|+|.||+||||++||..++|||++|||++|||+|++|.+
T Consensus       252 ~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~e  318 (345)
T 4g2n_A          252 KIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHE  318 (345)
T ss_dssp             HSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBHH
T ss_pred             hCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCHH
Confidence            9999999999999999999999999999999999999999999556799999999999999999975

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=3e-62  Score=428.62  Aligned_cols=219  Identities=33%  Similarity=0.520  Sum_probs=180.5

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      +|+||||++.++|+||||+++++++||    +||+++++||||+++++|++.|++..+++.+++|.|.....++.+.+|+
T Consensus        91 ~p~Lk~I~~~g~G~d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~  170 (340)
T 4dgs_A           91 LPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPK  170 (340)
T ss_dssp             CSSCCEEEEESSCCTTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCT
T ss_pred             CCCCEEEEECCCCccccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCcccccc
Confidence            799999999999999999999999999    7999999999999999999999999999999999998542334578999


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGK  158 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~  158 (223)
                      ||||||||+|+||+.+|+++++||++|++|||++....+.....+++|++++||+|++|+|++++|+++++++.|+.||+
T Consensus       171 gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~  250 (340)
T 4dgs_A          171 GKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGP  250 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCC
Confidence            99999999999999999999999999999999887655555667999999999999999999999999999999999999


Q ss_pred             CcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615          159 GGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       159 ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      +++|||++||+++|+++|+++|++|+|.||+||||++||++++|||++|||++|||+|++|.|
T Consensus       251 gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~~~L~~~~nvilTPHia~~t~e  313 (340)
T 4dgs_A          251 EGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVE  313 (340)
T ss_dssp             TCEEEECSCC--------------CCSSEEEESCCSSSSSCCSHHHHSSSEEECSSCSSCCHH
T ss_pred             CCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCccchhhCCCEEEcCcCCcCCHH
Confidence            999999999999999999999999999999999999999988899999999999999999975

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=3.3e-61  Score=419.81  Aligned_cols=217  Identities=18%  Similarity=0.261  Sum_probs=202.9

Q ss_pred             CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHH-HHHHHcCCCCCCCCCCCccc
Q 035615            2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPG-NWYVRAGLWAKTGDYPLGFK   76 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~-~~~~~~~~w~~~~~~~~~~~   76 (223)
                      .+|+||||++.++|+||||+++++++||    +||+++.+||||+++++|++.|++..+ ++.++++.|....   .+.+
T Consensus        58 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~---~~~~  134 (324)
T 3evt_A           58 PTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPM---TTST  134 (324)
T ss_dssp             TTCCCCEEECSSSCCTTSCHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS---CCCC
T ss_pred             hCCCceEEEECCccccccCHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCC---CCcc
Confidence            3799999999999999999999999998    799999999999999999999999999 9999999998542   4688


Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcc---cccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFP---YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~---~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      |+|+||||||+|.||+.+|+++++|||+|++|||+++....+.   ...++++++++||+|++|+|+|++|+++|+++.|
T Consensus       135 l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l  214 (324)
T 3evt_A          135 LTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELF  214 (324)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHH
T ss_pred             ccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHH
Confidence            9999999999999999999999999999999999876554322   3468999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCCCCCCceEEccCCCCCCCC
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP-KEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~-~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      +.||+|++|||+|||+++|+++|+++|++|+|.||++|||++||++. +|||++|||++|||+|++|.+
T Consensus       215 ~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~  283 (324)
T 3evt_A          215 QQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAH  283 (324)
T ss_dssp             HTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCC
T ss_pred             hcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHH
Confidence            99999999999999999999999999999999999999999999876 499999999999999999976

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=3.5e-61  Score=419.37  Aligned_cols=214  Identities=21%  Similarity=0.332  Sum_probs=199.4

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      +|+||||++.++|+||||.+++++ ||    +||+++.+||||+++++|++.|++..+++.+++|.|...    .+.+|+
T Consensus        65 ~~~Lk~I~~~~~G~d~id~~~~~~-gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~----~~~~l~  139 (324)
T 3hg7_A           65 ANKLSWFQSTYAGVDVLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSH----PYQGLK  139 (324)
T ss_dssp             CTTCCEEEESSSCCGGGSCTTSCC-SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC----CCCCST
T ss_pred             CCCceEEEECCCCCCccChHHHhC-CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCC----CCcccc
Confidence            799999999999999999988754 88    699999999999999999999999999999999999853    457899


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc---ccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhc
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF---PYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE  155 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~---~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~  155 (223)
                      |+||||||+|+||+.+|+++++|||+|++|||+++....+   ....++++++++||+|++|+|+|++|+++|+++.|+.
T Consensus       140 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~  219 (324)
T 3hg7_A          140 GRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEH  219 (324)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTC
T ss_pred             cceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhc
Confidence            9999999999999999999999999999999987654432   2356899999999999999999999999999999999


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CCCCCCceEEccCCCCCCCC
Q 035615          156 LGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK-EPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       156 mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~-~l~~~~nv~~TPH~a~~t~~  221 (223)
                      ||+|++|||+|||+++|+++|+++|++|+|+||+||||++||++.+ |||++|||++|||+|++|.+
T Consensus       220 mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~  286 (324)
T 3hg7_A          220 CKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP  286 (324)
T ss_dssp             SCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH
T ss_pred             CCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH
Confidence            9999999999999999999999999999999999999999998764 99999999999999999975

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=4.3e-61  Score=423.04  Aligned_cols=219  Identities=23%  Similarity=0.350  Sum_probs=202.1

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      +|+||||++.++|+||||+++++++||    +||+|+.+||||+++++|++.|++..+++.+++|.|........+.+|+
T Consensus        84 ~p~Lk~i~~~g~G~d~id~~~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~  163 (351)
T 3jtm_A           84 AKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLE  163 (351)
T ss_dssp             CSSCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCST
T ss_pred             CCCCeEEEEeCeeecccCHHHHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCccccc
Confidence            799999999999999999999999999    6999999999999999999999999999999999997431112357899


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      |+||||||+|+||+.+|+++++|||+|++|||++....     ++....++++++++||+|++|+|++++|+++|+++.|
T Consensus       164 gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l  243 (351)
T 3jtm_A          164 GKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELI  243 (351)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHH
T ss_pred             CCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHH
Confidence            99999999999999999999999999999999864432     3444568999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CCCCCCceEEccCCCCCCCC
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK-EPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~-~l~~~~nv~~TPH~a~~t~~  221 (223)
                      +.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||++.+ |||++|||++|||+|+.|.+
T Consensus       244 ~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~e  312 (351)
T 3jtm_A          244 GKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTID  312 (351)
T ss_dssp             HHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHH
T ss_pred             hcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHH
Confidence            999999999999999999999999999999999999999999998764 99999999999999999865

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=5.3e-60  Score=422.78  Aligned_cols=217  Identities=26%  Similarity=0.397  Sum_probs=198.0

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      +|+||+|++.++|+||||+++++++||    +||+|+++||||+++++|++.|++..+++.+++|.|.+..  ..+.+++
T Consensus        78 ~p~Lk~I~~~~~G~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~--~~~~el~  155 (416)
T 3k5p_A           78 ANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTA--IGSREVR  155 (416)
T ss_dssp             CTTCCEEEECSSCCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC--TTCCCST
T ss_pred             CCCcEEEEECccccCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccC--CCCccCC
Confidence            799999999999999999999999998    6999999999999999999999999999999999998642  2467899


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG  157 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk  157 (223)
                      |||+||||+|+||+.+|+++++|||+|++||+++.... ......++++++++||+|++|+|++++|+++|+++.|+.||
T Consensus       156 gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk  235 (416)
T 3k5p_A          156 GKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMK  235 (416)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCC
Confidence            99999999999999999999999999999999865443 33456799999999999999999999999999999999999


Q ss_pred             CCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC-----CCCCCCCceEEccCCCCCCCC
Q 035615          158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP-----KEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       158 ~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~-----~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      +|++|||+|||+++|++||+++|++|++.||++|||++||+++     +|||++|||++|||+|++|.|
T Consensus       236 ~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~e  304 (416)
T 3k5p_A          236 KGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEE  304 (416)
T ss_dssp             TTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHH
T ss_pred             CCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHH
Confidence            9999999999999999999999999999999999999999865     489999999999999999976

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=7.7e-60  Score=409.90  Aligned_cols=214  Identities=22%  Similarity=0.310  Sum_probs=195.7

Q ss_pred             ccceEEEEccccchhH-h-HHH---HHhcCC----CCCC-CcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCC
Q 035615            4 YQTNLYACILSEYQNW-L-KQL---IKQKSI----AKQA-DLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPL   73 (223)
Q Consensus         4 p~Lk~i~~~~aG~d~i-d-~~~---~~~~~i----~~~~-~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~   73 (223)
                      |+||||++.++|+||| | +++   +.++||    ++++ ++.+||||+++++|++.|++..+++.+++|.|...    .
T Consensus        58 ~~Lk~I~~~~aG~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~----~  133 (315)
T 3pp8_A           58 RRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPL----P  133 (315)
T ss_dssp             CCCSEEEESSSCCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC----C
T ss_pred             CCceEEEECCEecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCC----C
Confidence            9999999999999999 7 776   667787    4554 47999999999999999999999999999999754    4


Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCccc---ccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPY---CANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~---~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      +.+++|+||||||+|+||+.+|+++++|||+|++|+|+++...+...   ..++++++++||+|++|+|+|++|+++|++
T Consensus       134 ~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~  213 (315)
T 3pp8_A          134 EYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINS  213 (315)
T ss_dssp             CCCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSH
T ss_pred             CCCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccH
Confidence            57899999999999999999999999999999999998876554432   258999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCCCCCCceEEccCCCCCCCC
Q 035615          151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP-KEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~-~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      +.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||++. +|||++|||++|||+|++|.+
T Consensus       214 ~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~  285 (315)
T 3pp8_A          214 ELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRP  285 (315)
T ss_dssp             HHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSCCCH
T ss_pred             HHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCcccHH
Confidence            99999999999999999999999999999999999999999999999876 499999999999999999974

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=7.4e-60  Score=422.27  Aligned_cols=217  Identities=20%  Similarity=0.304  Sum_probs=193.7

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      +|+||||++.++|+||||+++++++||    +|++|+.+||||++++||++.|+++.+++.+++|.|.+..  ..+.+|+
T Consensus        67 ~~~Lk~I~~~~~G~d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~--~~~~el~  144 (404)
T 1sc6_A           67 AEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLA--AGSFEAR  144 (404)
T ss_dssp             CSSCCEEEECSSCCTTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-------CCCST
T ss_pred             CCCCcEEEECCcccCccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccC--CCccccC
Confidence            799999999999999999999999998    6999999999999999999999999999999999997532  2467899


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCC-cccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVL-FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG  157 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~-~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk  157 (223)
                      |||+||||+|+||+.+|+++++|||+|++|||++....+ .....+++|++++||+|++|+|++++|+++|+++.|+.||
T Consensus       145 gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk  224 (404)
T 1sc6_A          145 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMK  224 (404)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSC
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcC
Confidence            999999999999999999999999999999998765433 3445689999999999999999999999999999999999


Q ss_pred             CCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC-----CCCCCCCceEEccCCCCCCCC
Q 035615          158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP-----KEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       158 ~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~-----~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      +|++|||+|||+++|+++|+++|++|++.||+||||+.||++.     +|||++|||++|||+|++|.|
T Consensus       225 ~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T~e  293 (404)
T 1sc6_A          225 PGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQE  293 (404)
T ss_dssp             TTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCSHH
T ss_pred             CCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCcHH
Confidence            9999999999999999999999999999999999999999863     489999999999999999975

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=5e-60  Score=413.70  Aligned_cols=218  Identities=24%  Similarity=0.413  Sum_probs=201.4

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      +|+||||++.++|+||||++++.++||    +||+++.+||||+++++|++.|++..+++.+++|.|........+.+|+
T Consensus        65 ~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~  144 (330)
T 4e5n_A           65 CPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLD  144 (330)
T ss_dssp             CTTCCEEEESSSCCTTBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCST
T ss_pred             CCCCcEEEECCCcccccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccC
Confidence            699999999999999999999999998    6999999999999999999999999999999999997432233578999


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      |+||||||+|+||+.+|+++++|||+|++|||++....     +. ...++++++++||+|++|+|++++|+++++++.|
T Consensus       145 g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~-~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l  223 (330)
T 4e5n_A          145 NATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGL-RQVACSELFASSDFILLALPLNADTLHLVNAELL  223 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTE-EECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCc-eeCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHH
Confidence            99999999999999999999999999999999874321     22 3458999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCC-------CCCCC-CCCCCCceEEccCCCCCCCC
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEND-------PNVPK-EPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~E-------P~~~~-~l~~~~nv~~TPH~a~~t~~  221 (223)
                      +.||+|++|||+|||+++|+++|+++|++|+|.||+||||++|       |++.+ |||++|||++|||+|++|.+
T Consensus       224 ~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~t~e  299 (330)
T 4e5n_A          224 ALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA  299 (330)
T ss_dssp             TTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTCCHH
T ss_pred             hhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCChHH
Confidence            9999999999999999999999999999999999999999999       97654 99999999999999999964

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=2.6e-59  Score=413.04  Aligned_cols=219  Identities=17%  Similarity=0.221  Sum_probs=195.9

Q ss_pred             CCccceEEEEc-cccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCC-CCCcc
Q 035615            2 LCYQTNLYACI-LSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGD-YPLGF   75 (223)
Q Consensus         2 ~~p~Lk~i~~~-~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~-~~~~~   75 (223)
                      .+|+||||+++ ++|+||||+++++++||    +||+|+.+||||+++++|++.|++..+++.+++|.|.+... ...+.
T Consensus        93 ~~p~Lk~I~~~~~~G~d~iD~~~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~  172 (365)
T 4hy3_A           93 RMPALRSILNVESNLLNNMPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASAR  172 (365)
T ss_dssp             TCTTCCEEECCSSSCCSCSCTTHHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCC
T ss_pred             hCCCCeEEEEecccccCcccHHHHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCcccccccccccc
Confidence            48999999975 88999999999999999    69999999999999999999999999999999998543211 23578


Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---CcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +|+|+||||||+|+||+.+|+++++|||+|++|||+.....   ......++++++++||+|++|+|++++|+++|+++.
T Consensus       173 ~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~  252 (365)
T 4hy3_A          173 LIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSMLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEA  252 (365)
T ss_dssp             CSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCHHH
T ss_pred             ccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCHHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHH
Confidence            99999999999999999999999999999999999864321   112356899999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCCCCCCceEEccCCCCCCCC
Q 035615          153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP-KEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~-~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      |+.||+|++|||+|||+++|++||+++|++|+|. |+||||++||+++ +|||++|||++|||+||+|.+
T Consensus       253 l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e  321 (365)
T 4hy3_A          253 FSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRAGALDS  321 (365)
T ss_dssp             HHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSCSSCCHH
T ss_pred             HhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCccccCHHH
Confidence            9999999999999999999999999999999998 9999999999876 499999999999999999975

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=1.5e-59  Score=412.00  Aligned_cols=217  Identities=18%  Similarity=0.305  Sum_probs=196.6

Q ss_pred             ccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHH-cCCCCCCCCCCCccccC
Q 035615            4 YQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVR-AGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         4 p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~-~~~w~~~~~~~~~~~l~   78 (223)
                      |+||||++.++|+||||+++++++||    +||+++.+||||+++++|++.|++..+++.++ +|.|.+... ..+.+|+
T Consensus        69 ~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~-~~~~~l~  147 (343)
T 2yq5_A           69 YGVKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSN-LISNEIY  147 (343)
T ss_dssp             TTCCEEEESSSCCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGG-GCBCCGG
T ss_pred             cCceEEEECceeecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccC-CCccccC
Confidence            46999999999999999999999998    69999999999999999999999999999999 887754222 3578999


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG  157 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk  157 (223)
                      |+||||||+|+||+.+|+++++|||+|++|||++.... ....+.++++++++||+|++|+|+|++|+++|+++.|+.||
T Consensus       148 gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk  227 (343)
T 2yq5_A          148 NLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMK  227 (343)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSC
T ss_pred             CCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCC
Confidence            99999999999999999999999999999999876432 22345699999999999999999999999999999999999


Q ss_pred             CCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCC--CCCC------------CCCCCCceEEccCCCCCCCC
Q 035615          158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP--NVPK------------EPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       158 ~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP--~~~~------------~l~~~~nv~~TPH~a~~t~~  221 (223)
                      +|++|||+|||+++|+++|+++|++|+|.||+||||++||  ++.+            |||++|||++|||+|++|.+
T Consensus       228 ~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvilTPHia~~t~e  305 (343)
T 2yq5_A          228 KSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTET  305 (343)
T ss_dssp             TTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEEECSSCTTCBHH
T ss_pred             CCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEEECCccccchHH
Confidence            9999999999999999999999999999999999999999  3333            79999999999999999975

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=7.8e-59  Score=399.13  Aligned_cols=215  Identities=24%  Similarity=0.286  Sum_probs=200.7

Q ss_pred             CCccceEEEEccccchhHhHHHHHhcCC---CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            2 LCYQTNLYACILSEYQNWLKQLIKQKSI---AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i---~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      .+|+||||++.++|+||||+++++++++   ++|.|+.+||||+++++|++.|++..+++.+++|.|...    ...+|+
T Consensus        46 ~~~~Lk~I~~~~~G~d~id~~~~~~~~~~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~----~~~~l~  121 (290)
T 3gvx_A           46 LGKRTKMIQAISAGVDHIDVNGIPENVVLCSNAGAYSISVAEHAFALLLAHAKNILENNELMKAGIFRQS----PTTLLY  121 (290)
T ss_dssp             CCSSCCEEEECSSCCTTSCGGGSCTTSEEECCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC----CCCCCT
T ss_pred             hhhhhHHHHHHhcCCceeecCCCccceEEeecCCcceeeHHHHHHHHHHHHHHhhhhhhhHhhhcccccC----Cceeee
Confidence            3799999999999999999999988776   578899999999999999999999999999999999854    236799


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGK  158 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~  158 (223)
                      |+||||||+|.||+.+|+++++|||+|++|||++..........++++++++||+|++|+|++++|+++++++.|+.||+
T Consensus       122 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~  201 (290)
T 3gvx_A          122 GKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARK  201 (290)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCT
T ss_pred             cchheeeccCchhHHHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhc
Confidence            99999999999999999999999999999999887665555556999999999999999999999999999999999999


Q ss_pred             CcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCC-CCCCCC
Q 035615          159 GGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQN-ALTHWE  222 (223)
Q Consensus       159 ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a-~~t~~~  222 (223)
                      |++|||+|||+++|+++|+++|++|++.+|++|||++||+  +|||++||+++|||+| ++|.+.
T Consensus       202 gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~pL~~~~nvilTPHiag~~t~e~  264 (290)
T 3gvx_A          202 NLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE--ITETNLRNAILSPHVAGGMSGEI  264 (290)
T ss_dssp             TCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS--CCSCCCSSEEECCSCSSCBTTBC
T ss_pred             CceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc--cchhhhhhhhcCccccCCccchH
Confidence            9999999999999999999999999999999999999997  8999999999999999 777663

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=4.7e-59  Score=410.38  Aligned_cols=219  Identities=23%  Similarity=0.312  Sum_probs=201.5

Q ss_pred             CCccceEEEEccccc----hhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCC----
Q 035615            2 LCYQTNLYACILSEY----QNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTG----   69 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~----d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~----   69 (223)
                      .+|+||+|+++++|+    ||||+++++++||    +||+ +.+||||+++++|++.|++..+++.+++|.|....    
T Consensus        68 ~~~~Lk~I~~~g~G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~  146 (352)
T 3gg9_A           68 RLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKST  146 (352)
T ss_dssp             TCTTCCEEEESSCCCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCT
T ss_pred             hCCCCeEEEEeCcccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCccccccc
Confidence            379999999999999    9999999999998    6999 99999999999999999999999999999998532    


Q ss_pred             ----CCCCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcccccChhhhhcCCcEEEEeccCC
Q 035615           70 ----DYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFPYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        70 ----~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                          ....+.+|+|+||||||+|.||+.+|+++++||++|++|||+....    .++....++++++++||+|++|+|++
T Consensus       147 ~~~~~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt  226 (352)
T 3gg9_A          147 TMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLN  226 (352)
T ss_dssp             TSCTTTTSBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCS
T ss_pred             ccccccccCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCc
Confidence                1124789999999999999999999999999999999999875321    24444559999999999999999999


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCCCCCCceEEccCCCCCCC
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP-KEPLRLDNIVLLPCQNALTH  220 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~-~~l~~~~nv~~TPH~a~~t~  220 (223)
                      ++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||++. +|||++|||++|||+|++|.
T Consensus       227 ~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~  306 (352)
T 3gg9_A          227 DETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVER  306 (352)
T ss_dssp             TTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEECCSCTTCBH
T ss_pred             HHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEECCCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999875 59999999999999999986


Q ss_pred             C
Q 035615          221 W  221 (223)
Q Consensus       221 ~  221 (223)
                      +
T Consensus       307 e  307 (352)
T 3gg9_A          307 E  307 (352)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=3.6e-58  Score=409.29  Aligned_cols=219  Identities=23%  Similarity=0.336  Sum_probs=200.5

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      +|+||||++.++|+||||+++++++||    ++++|+.+||||++++||++.|++..+++.+++|.|........+.+|+
T Consensus       111 ~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~  190 (393)
T 2nac_A          111 AKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLE  190 (393)
T ss_dssp             CTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCT
T ss_pred             CCCCcEEEEcCccccccCHHHHhcCCEEEEeCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCccccccCCccCC
Confidence            799999999999999999999999999    6999999999999999999999999999999999996321111357899


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      |+||||||+|+||+.+|+++++|||+|++||+++....     +.....++++++++||+|++|+|++++|+++|+++.|
T Consensus       191 gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l  270 (393)
T 2nac_A          191 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETL  270 (393)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHH
T ss_pred             CCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHH
Confidence            99999999999999999999999999999999865432     3333468999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCCCCCCceEEccCCCCCCCC
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP-KEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~-~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      +.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||++. +|||++|||++|||+|+.|.+
T Consensus       271 ~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T~e  339 (393)
T 2nac_A          271 KLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLT  339 (393)
T ss_dssp             TTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCSHH
T ss_pred             hhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCcHH
Confidence            99999999999999999999999999999999999999999999865 599999999999999999964

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=6.7e-58  Score=400.80  Aligned_cols=218  Identities=26%  Similarity=0.318  Sum_probs=198.0

Q ss_pred             Ccc--ceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccc
Q 035615            3 CYQ--TNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFK   76 (223)
Q Consensus         3 ~p~--Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~   76 (223)
                      +|+  ||||++.++|+||||+++++++||    +||+++.+||||+++++|++.|++..+++.+++|.|.+... ..+.+
T Consensus        64 ~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~-~~~~~  142 (333)
T 1dxy_A           64 MHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGT-FIGKE  142 (333)
T ss_dssp             HHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTC-CCCCC
T ss_pred             CcccCceEEEEcCcccCccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccC-CCccC
Confidence            466  999999999999999999999998    69999999999999999999999999999999999853111 24678


Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhc
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE  155 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~  155 (223)
                      |.|+||||||+|+||+.+|+++++|||+|++|||++.... ....+.++++++++||+|++|+|++++|+++|+++.|+.
T Consensus       143 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~  222 (333)
T 1dxy_A          143 LGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNL  222 (333)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhh
Confidence            9999999999999999999999999999999999876431 122346899999999999999999999999999999999


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCC----------CC----CCCCCCCceEEccCCCCCCCC
Q 035615          156 LGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPN----------VP----KEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       156 mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~----------~~----~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      ||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+          .+    +|||++|||++|||+|++|.+
T Consensus       223 mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~TPHia~~t~e  302 (333)
T 1dxy_A          223 MKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTET  302 (333)
T ss_dssp             SCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTCSHH
T ss_pred             CCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEECCccccChHH
Confidence            9999999999999999999999999999999999999999993          12    369999999999999999975

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=3.2e-58  Score=407.03  Aligned_cols=219  Identities=20%  Similarity=0.284  Sum_probs=199.9

Q ss_pred             CccceEEEEccccchhHhHHHHHhc--CC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccc
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQK--SI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFK   76 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~--~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~   76 (223)
                      +|+||||++.++|+||||+++++++  ||    +||+|+.+||||++++||++.|++..+++.+++|.|........+.+
T Consensus        82 ~~~Lk~I~~~~~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~  161 (364)
T 2j6i_A           82 AKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYD  161 (364)
T ss_dssp             CTTCCEEEESSSCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCC
T ss_pred             CCCCeEEEECCcccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcccCCccc
Confidence            6999999999999999999999999  98    69999999999999999999999999999999999963210013578


Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      |+|+||||||+|+||+.+|+++++|||+ |++||+++....     +.....++++++++||+|++|+|.+++|+++|++
T Consensus       162 l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  241 (364)
T 2j6i_A          162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINK  241 (364)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCH
Confidence            9999999999999999999999999997 999998774322     2333458999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCCCCC--C---ceEEccCCCCCCCC
Q 035615          151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP-KEPLRL--D---NIVLLPCQNALTHW  221 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~-~~l~~~--~---nv~~TPH~a~~t~~  221 (223)
                      +.|+.||++++|||+|||+++|+++|+++|++|+|.||+||||++||++. +|||.+  |   ||++|||+|++|.+
T Consensus       242 ~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia~~t~e  318 (364)
T 2j6i_A          242 ELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLD  318 (364)
T ss_dssp             HHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCGGGSHH
T ss_pred             HHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccCcCCHH
Confidence            99999999999999999999999999999999999999999999999876 489999  9   99999999999865

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-57  Score=398.53  Aligned_cols=216  Identities=24%  Similarity=0.365  Sum_probs=200.3

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      +|+||||++.++|+||||+++++++||    +||+|+.+||||+++++|++.|++..+++.+++|.|....  ..+.+++
T Consensus        87 ~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~--~~~~~l~  164 (335)
T 2g76_A           87 AEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKK--FMGTELN  164 (335)
T ss_dssp             CSSCCEEEESSSSCTTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGG--GCBCCCT
T ss_pred             CCCCcEEEECCCCcchhChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccC--CCCcCCC
Confidence            799999999999999999999999998    6999999999999999999999999999999999997431  1367899


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA  154 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~  154 (223)
                      |+||||||+|.||+.+|+++++||++|++|||+..+.    .++ ...++++++++||+|++|+|.+++|+++|+++.|+
T Consensus       165 g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~-~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~  243 (335)
T 2g76_A          165 GKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGV-QQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFA  243 (335)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHHHHHHTTC-EECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHT
T ss_pred             cCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCc-eeCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHh
Confidence            9999999999999999999999999999999976542    122 23589999999999999999999999999999999


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615          155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       155 ~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      .||+|++|||+|||+++|+++|+++|++|++.||+||||+.||+.++|||++||+++|||+|++|.+
T Consensus       244 ~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~e  310 (335)
T 2g76_A          244 QCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKE  310 (335)
T ss_dssp             TSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBHH
T ss_pred             hCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCHH
Confidence            9999999999999999999999999999999999999999999766799999999999999999865

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=2.4e-57  Score=397.03  Aligned_cols=218  Identities=15%  Similarity=0.254  Sum_probs=198.1

Q ss_pred             Ccc--ceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccc
Q 035615            3 CYQ--TNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFK   76 (223)
Q Consensus         3 ~p~--Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~   76 (223)
                      +|+  ||||++.++|+||||+++++++||    +||+++.+||||+++++|++.|++..+++.+++|.|.+... ..+.+
T Consensus        65 ~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~-~~~~~  143 (331)
T 1xdw_A           65 YKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAF-MFSKE  143 (331)
T ss_dssp             HHHHTCCEEEESSSCCTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCST-TCCCC
T ss_pred             CcccCceEEEEccccccccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccC-cCccC
Confidence            467  999999999999999999999998    69999999999999999999999999999999999964111 24678


Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhc
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE  155 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~  155 (223)
                      +.|+||||||+|.||+.+|+++++||++|++|||++.... ....+.++++++++||+|++|+|++++|+++|+++.|+.
T Consensus       144 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~  223 (331)
T 1xdw_A          144 VRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKK  223 (331)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHHHHhccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhh
Confidence            9999999999999999999999999999999999876431 122356899999999999999999999999999999999


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCC--CC--------C----CCCCC-CceEEccCCCCCCC
Q 035615          156 LGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPN--VP--------K----EPLRL-DNIVLLPCQNALTH  220 (223)
Q Consensus       156 mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~--~~--------~----~l~~~-~nv~~TPH~a~~t~  220 (223)
                      ||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+  ++        +    |||++ |||++|||+|++|.
T Consensus       224 mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvilTPHia~~t~  303 (331)
T 1xdw_A          224 MKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTD  303 (331)
T ss_dssp             SCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEECCSCTTCSH
T ss_pred             CCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEEcCccccChH
Confidence            9999999999999999999999999999999999999999994  21        2    69999 99999999999997


Q ss_pred             C
Q 035615          221 W  221 (223)
Q Consensus       221 ~  221 (223)
                      +
T Consensus       304 ~  304 (331)
T 1xdw_A          304 E  304 (331)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=3.1e-57  Score=396.65  Aligned_cols=217  Identities=20%  Similarity=0.220  Sum_probs=197.2

Q ss_pred             Ccc--ceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccc
Q 035615            3 CYQ--TNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFK   76 (223)
Q Consensus         3 ~p~--Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~   76 (223)
                      +|+  ||||++.++|+||||+++++++||    +||+++++||||+++++|++.|++..+++.+++|.|.+..  ..+.+
T Consensus        66 ~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~--~~~~~  143 (333)
T 1j4a_A           66 LADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAP--TIGRE  143 (333)
T ss_dssp             HHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTT--CCBCC
T ss_pred             ccccCCeEEEECCcccccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCC--ccccc
Confidence            466  999999999999999999999998    6999999999999999999999999999999999996432  25678


Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC--CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS--VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA  154 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~--~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~  154 (223)
                      ++|+||||||+|+||+.+|+++++||++|++||+++.+.  ..+....++++++++||+|++|+|++++|+++++++.|+
T Consensus       144 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~  223 (333)
T 1j4a_A          144 VRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIA  223 (333)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHH
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHh
Confidence            999999999999999999999999999999999987542  112223389999999999999999999999999999999


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCC--CC--------C----CCCCCCceEEccCCCCCCC
Q 035615          155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPN--VP--------K----EPLRLDNIVLLPCQNALTH  220 (223)
Q Consensus       155 ~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~--~~--------~----~l~~~~nv~~TPH~a~~t~  220 (223)
                      .||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+  ++        +    |||++|||++|||+|++|.
T Consensus       224 ~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilTPHia~~t~  303 (333)
T 1j4a_A          224 KMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTT  303 (333)
T ss_dssp             HSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTTCBH
T ss_pred             hCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEECCccccCHH
Confidence            99999999999999999999999999999999999999999993  22        2    4999999999999999997


Q ss_pred             C
Q 035615          221 W  221 (223)
Q Consensus       221 ~  221 (223)
                      +
T Consensus       304 ~  304 (333)
T 1j4a_A          304 H  304 (333)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.1e-56  Score=389.22  Aligned_cols=217  Identities=31%  Similarity=0.441  Sum_probs=200.6

Q ss_pred             CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCcccc
Q 035615            2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKL   77 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l   77 (223)
                      .+|+||||++.++|+||||+++++++||    +||+|+.+||||+++++|++.|++..+++.+++|.|....  ..+.+|
T Consensus        63 ~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~--~~~~~l  140 (307)
T 1wwk_A           63 SAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKE--AMGIEL  140 (307)
T ss_dssp             TCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTT--CCBCCC
T ss_pred             hCCCCeEEEECCccccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccC--cCCccc
Confidence            3799999999999999999999999998    6999999999999999999999999999999999997421  246789


Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      .|+||||||+|+||+.+|+++++||++|++|||++...    .++ ...++++++++||+|++|+|.+++|+++++++.|
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~-~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l  219 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNG-KFVDLETLLKESDVVTIHVPLVESTYHLINEERL  219 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTC-EECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHH
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCChhhHhhcCc-cccCHHHHHhhCCEEEEecCCChHHhhhcCHHHH
Confidence            99999999999999999999999999999999987642    122 2358999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCCCCCCceEEccCCCCCCCC
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP-KEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~-~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      +.||+|++|||++||+++|+++|.++|++|++.||++|||++||++. +|||++||+++|||++++|.+
T Consensus       220 ~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~  288 (307)
T 1wwk_A          220 KLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVE  288 (307)
T ss_dssp             HHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHH
T ss_pred             hcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHH
Confidence            99999999999999999999999999999999999999999999854 599999999999999999865

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=3.8e-56  Score=389.46  Aligned_cols=218  Identities=41%  Similarity=0.661  Sum_probs=204.4

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      +|+||||++.++|+||||+++++++||    +||+++.+||||+++++|++.|++..+++.+++|.|... .+..+.+++
T Consensus        85 ~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~-~~~~~~~l~  163 (333)
T 3ba1_A           85 LPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFG-DFKLTTKFS  163 (333)
T ss_dssp             CTTCCEEEESSSCCTTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGC-CCCCCCCCT
T ss_pred             CCCCcEEEEcCccccccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcc-ccccccccC
Confidence            799999999999999999999999998    799999999999999999999999999999999999742 223467899


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGK  158 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~  158 (223)
                      |++|||||+|+||+.+|++++++|++|++|||++....+.....++++++++||+|++|+|.+++|+++++++.++.||+
T Consensus       164 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~  243 (333)
T 3ba1_A          164 GKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGP  243 (333)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTCCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhccCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCC
Confidence            99999999999999999999999999999999887655555567899999999999999999999999999999999999


Q ss_pred             CcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615          159 GGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       159 ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      +++|||++||.++|+++|.++|++|++.+|++|||++||++.+|||++|||++|||+|+.|.+
T Consensus       244 gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~L~~~~nviltPH~~~~t~e  306 (333)
T 3ba1_A          244 KGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVE  306 (333)
T ss_dssp             TCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCCGGGGGCTTEEECSSCTTCSHH
T ss_pred             CCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCcchhhcCCCEEECCcCCCCCHH
Confidence            999999999999999999999999999999999999999877899999999999999999865

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=6e-56  Score=385.16  Aligned_cols=216  Identities=28%  Similarity=0.499  Sum_probs=200.0

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCC-CCCCcccc
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTG-DYPLGFKL   77 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~-~~~~~~~l   77 (223)
                      +|+||||++.++|+||||+++++++||    +||+|+.+||||+++++|++.|++..+++.+++|.|.... ....+.++
T Consensus        63 ~~~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l  142 (311)
T 2cuk_A           63 AKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDL  142 (311)
T ss_dssp             STTCCEEECSSSCCTTBCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCC
T ss_pred             CCCCeEEEECCcCccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCC
Confidence            799999999999999999999999998    6999999999999999999999999999999999996321 11246789


Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG  157 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk  157 (223)
                      .|+||||||+|+||+.+|++++++|++|++|||++....  ....++++++++||+|++|+|.+++|+++++++.++.||
T Consensus       143 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~--~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk  220 (311)
T 2cuk_A          143 QGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP--YPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMK  220 (311)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS--SCBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSC
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc--cccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCC
Confidence            999999999999999999999999999999999876654  235689999999999999999999999999999999999


Q ss_pred             CCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCCCCCCceEEccCCCCCCCC
Q 035615          158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP-KEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       158 ~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~-~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      +|++|||+|||+++|+++|.++|+ |++.||++|||++||++. +|||++||+++|||++++|.+
T Consensus       221 ~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~  284 (311)
T 2cuk_A          221 RGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRT  284 (311)
T ss_dssp             TTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHH
T ss_pred             CCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHH
Confidence            999999999999999999999999 999999999999999765 599999999999999999865

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.6e-56  Score=389.07  Aligned_cols=214  Identities=22%  Similarity=0.321  Sum_probs=200.4

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      +|+||||++.++|+||||.+++.++||    +||+|+.+||||+++++|++.|++..+++.+++|.|..    ..+.++.
T Consensus        66 ~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~----~~~~~l~  141 (313)
T 2ekl_A           66 GKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKK----IEGLELA  141 (313)
T ss_dssp             CTTCCEEEECSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCC----CCCCCCT
T ss_pred             CCCCeEEEEcCCCCCccCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCC----CCCCCCC
Confidence            699999999999999999999999998    69999999999999999999999999999999999962    2467899


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA  154 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~  154 (223)
                      |+||||||+|+||+.+|++++++|++|++||+++...    .+.. ..++++++++||+|++|+|.+++|+++++++.++
T Consensus       142 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~  220 (313)
T 2ekl_A          142 GKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAK-AVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFE  220 (313)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCE-ECCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhHHHhcCce-ecCHHHHHhhCCEEEEeccCChHHHHhhCHHHHh
Confidence            9999999999999999999999999999999987642    1232 3589999999999999999999999999999999


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC---CCCCCCceEEccCCCCCCCC
Q 035615          155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK---EPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       155 ~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~---~l~~~~nv~~TPH~a~~t~~  221 (223)
                      .||+|++|||++||+++|+++|.++|++|++.||++|||+.||++++   |||++||+++|||++++|.+
T Consensus       221 ~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L~~~~nviltPH~~~~t~~  290 (313)
T 2ekl_A          221 LMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKE  290 (313)
T ss_dssp             HSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHHHHSTTEEECCSCTTCSHH
T ss_pred             cCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCCCcccchHhhCCCEEECCccCcCcHH
Confidence            99999999999999999999999999999999999999999998887   99999999999999999965

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=8.2e-56  Score=385.73  Aligned_cols=219  Identities=24%  Similarity=0.340  Sum_probs=200.0

Q ss_pred             Ccc-ceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCC-CCCCccc
Q 035615            3 CYQ-TNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTG-DYPLGFK   76 (223)
Q Consensus         3 ~p~-Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~-~~~~~~~   76 (223)
                      +|+ ||||++.++|+||||+++++++||    +||+|+.+||||+++++|++.|++..+++.+++|.|.... ....+.+
T Consensus        64 ~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~  143 (320)
T 1gdh_A           64 IPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEK  143 (320)
T ss_dssp             SCTTCCEEEEESSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCC
T ss_pred             CCccceEEEECCcccccccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcC
Confidence            689 999999999999999999999998    6999999999999999999999999999999999996321 1124678


Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcC-CCCCC----CCcccccChhhhhcCCcEEEEeccCChhhhhccCHH
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSR-RKRPS----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~-~~~~~----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~  151 (223)
                      +.|+||||||+|+||+.+|+++++||++|++||+ ++...    .+.....++++++++||+|++|+|.+++|+++++++
T Consensus       144 l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~  223 (320)
T 1gdh_A          144 LDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKA  223 (320)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHH
Confidence            9999999999999999999999999999999999 76542    133333489999999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615          152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      .++.||+|++|||++||+++|+++|.++|++|++.||++|||+.||..++|||++||+++|||++++|.+
T Consensus       224 ~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nviltPH~~~~t~~  293 (320)
T 1gdh_A          224 TIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQ  293 (320)
T ss_dssp             HHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTCBHH
T ss_pred             HHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCEEECCcCCcCcHH
Confidence            9999999999999999999999999999999999999999999999545699999999999999999875

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=4.1e-56  Score=384.85  Aligned_cols=211  Identities=18%  Similarity=0.240  Sum_probs=195.0

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      +|+||||++.++|+||||++++ ++||    ++|+++.+||||+++++|++.|++..+++.+++|.|....   ...++.
T Consensus        48 ~~~Lk~I~~~~~G~d~id~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~---~~~~l~  123 (303)
T 1qp8_A           48 MPRLKFIQVVTAGLDHLPWESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV---EIPLIQ  123 (303)
T ss_dssp             CTTCCCEEBSSSCCTTSCCTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS---CCCCCT
T ss_pred             CCCCcEEEECCcCcccccHHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC---CCCCCC
Confidence            7999999999999999999885 6887    6999999999999999999999999999999999996431   235799


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGK  158 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~  158 (223)
                      |+||||||+|+||+.+|+++++||++|++|||++. ..+.....++++++++||+|++|+|.+++|+++++++.|+.||+
T Consensus       124 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~~~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~  202 (303)
T 1qp8_A          124 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-EGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAE  202 (303)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-CSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCT
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-ccCcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCC
Confidence            99999999999999999999999999999999876 22334456899999999999999999999999999999999999


Q ss_pred             CcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCC-CCCCCCC-CCCCCCCceEEccCCCCC
Q 035615          159 GGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVF-ENDPNVP-KEPLRLDNIVLLPCQNAL  218 (223)
Q Consensus       159 ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~-~~EP~~~-~~l~~~~nv~~TPH~a~~  218 (223)
                      |++|||+|||+++|+++|.++|++|++.||++||| ++||++. +|||++||+++|||++++
T Consensus       203 gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltPH~~~~  264 (303)
T 1qp8_A          203 DAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGG  264 (303)
T ss_dssp             TCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSSS
T ss_pred             CCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECCCcCCC
Confidence            99999999999999999999999999999999999 8899875 499999999999999998

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=3.1e-55  Score=385.55  Aligned_cols=220  Identities=25%  Similarity=0.365  Sum_probs=199.4

Q ss_pred             CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCC-----CC
Q 035615            2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGD-----YP   72 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~-----~~   72 (223)
                      .+|+||||++.++|+||||+++++++||    +||+++++||||+++++|++.|++..+++.+++|.|.....     ..
T Consensus        82 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~  161 (347)
T 1mx3_A           82 KFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVAS  161 (347)
T ss_dssp             TCSSCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTT
T ss_pred             hCCCCCEEEEcccccCcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCccccccccccccc
Confidence            3799999999999999999999999998    69999999999999999999999999999999999963210     00


Q ss_pred             CccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----CcccccChhhhhcCCcEEEEeccCChhhhhcc
Q 035615           73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LFPYCANVYDLAVNSDVLVVCCALTEQTHHII  148 (223)
Q Consensus        73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li  148 (223)
                      .+.+++|+||||||+|+||+.+|+++++||++|++||++..+..    +.....++++++++||+|++|+|++++|+++|
T Consensus       162 ~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li  241 (347)
T 1mx3_A          162 GAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLI  241 (347)
T ss_dssp             TCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSB
T ss_pred             CccCCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHh
Confidence            12589999999999999999999999999999999998765421    23334589999999999999999999999999


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC--CCCCCCCceEEccCCCCCCCC
Q 035615          149 NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP--KEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       149 ~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~--~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      +++.|+.||+|++|||++||+++|+++|+++|++|+|.||++|||+.||++.  +|||.+||+++|||+|++|++
T Consensus       242 ~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~t~~  316 (347)
T 1mx3_A          242 NDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQ  316 (347)
T ss_dssp             SHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTCCHH
T ss_pred             HHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999863  589999999999999999864

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=9.4e-55  Score=384.98  Aligned_cols=198  Identities=24%  Similarity=0.298  Sum_probs=182.7

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      +|+||||++.++|+||||+++++++||    +||+|+.+||||+++++|++.|+.                    +.+|+
T Consensus        59 ~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~--------------------g~~l~  118 (381)
T 3oet_A           59 GTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD--------------------GFSLR  118 (381)
T ss_dssp             TSCCCEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT--------------------TCCGG
T ss_pred             CCCCEEEEEccccccccCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc--------------------CCccC
Confidence            467999999999999999999999998    799999999999999999999862                    35699


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChh----hhhccCHHHHh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQ----THHIINKDVMA  154 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~----t~~li~~~~l~  154 (223)
                      |+||||||+|+||+.+|+++++|||+|++||+..........+.++++++++||+|++|+|++++    |+++++++.|+
T Consensus       119 gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~  198 (381)
T 3oet_A          119 DRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIR  198 (381)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHH
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHh
Confidence            99999999999999999999999999999998654332333467999999999999999999999    99999999999


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615          155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       155 ~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      .||+|++|||+|||+++|+++|+++|++|++.||+||||++||+++++||.++ +++|||+||+|.|
T Consensus       199 ~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~~~L~~~~-~i~TPHiag~t~e  264 (381)
T 3oet_A          199 RLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAV-DIGTSHIAGYTLE  264 (381)
T ss_dssp             HSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHHHS-SEECSSCTTCCHH
T ss_pred             cCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCCCcchhhhCC-EEECCccCcCcHH
Confidence            99999999999999999999999999999999999999999998877899875 8999999999965

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=3.6e-53  Score=372.89  Aligned_cols=219  Identities=21%  Similarity=0.317  Sum_probs=198.1

Q ss_pred             Cc-cceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCC---CCCCC--CCC
Q 035615            3 CY-QTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGL---WAKTG--DYP   72 (223)
Q Consensus         3 ~p-~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~---w~~~~--~~~   72 (223)
                      +| +||||++.++|+||||+++++++||    +||+++.+||||+++++|++.|++..+++.+++|.   |....  ...
T Consensus        77 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~  156 (348)
T 2w2k_A           77 LPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGK  156 (348)
T ss_dssp             SCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred             cccCceEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccc
Confidence            67 6999999999999999999999998    69999999999999999999999999999999999   94210  012


Q ss_pred             CccccCCCEEEEEecChHHHHHHHHHH-hCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhh
Q 035615           73 LGFKLGGMQVGIVRLGNIGSEVLNRLQ-AFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~  146 (223)
                      .+.+|+|+||||||+|+||+.+|++++ ++|++|++||+++...+     +.....++++++++||+|++|+|.+++|++
T Consensus       157 ~~~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~  236 (348)
T 2w2k_A          157 SAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHH  236 (348)
T ss_dssp             TCCCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTT
T ss_pred             cCcCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHH
Confidence            457899999999999999999999999 99999999999875422     333334899999999999999999999999


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615          147 IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       147 li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      +++++.++.||++++|||++||+++|+++|.++|++|++.||++|||++||..++|||++|||++|||+++.|.+
T Consensus       237 li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~nviltPH~~~~t~e  311 (348)
T 2w2k_A          237 LIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIE  311 (348)
T ss_dssp             CBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTTSCCHHHHTSSSEEECCSCTTCSHH
T ss_pred             HhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCCCCCchhhcCCCEEEcCcCCCCCHH
Confidence            999999999999999999999999999999999999999999999999999444589999999999999999865

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=5.9e-53  Score=369.52  Aligned_cols=218  Identities=29%  Similarity=0.496  Sum_probs=198.1

Q ss_pred             CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCc---
Q 035615            2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLG---   74 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~---   74 (223)
                      .+|+||||++.++|+||||+++++++||    +||+++.+||||+++++|++.|++..+++.+++|.|........+   
T Consensus        61 ~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~  140 (333)
T 2d0i_A           61 NAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKR  140 (333)
T ss_dssp             TCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCC
T ss_pred             hCCCceEEEECCcccccccHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcc
Confidence            3799999999999999999999999998    699999999999999999999999999999999999631000123   


Q ss_pred             -cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----CcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           75 -FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        75 -~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                       .+|+|++|||||+|.||+.+|++++++|++|++||+++....    +. ...++++++++||+|++|+|.+++|+++++
T Consensus       141 ~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~-~~~~l~e~l~~aDiVil~vp~~~~t~~~i~  219 (333)
T 2d0i_A          141 IESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKA-RYMDIDELLEKSDIVILALPLTRDTYHIIN  219 (333)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCHHHHHHHTE-EECCHHHHHHHCSEEEECCCCCTTTTTSBC
T ss_pred             cCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCc-eecCHHHHHhhCCEEEEcCCCChHHHHHhC
Confidence             689999999999999999999999999999999999876421    22 235899999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCC-ceEEccCCCCCCCC
Q 035615          150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLD-NIVLLPCQNALTHW  221 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~-nv~~TPH~a~~t~~  221 (223)
                      ++.++.||++ +|||+|||.++|+++|.++|+++++.||++|||++||++++|||++| |+++|||+++.|.+
T Consensus       220 ~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~~nviltPh~~~~t~~  291 (333)
T 2d0i_A          220 EERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALE  291 (333)
T ss_dssp             HHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCSCCGGGGCTTTEEECCSCTTCCHH
T ss_pred             HHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCCCchHHcCCCCEEEcCccCCCcHH
Confidence            9999999999 99999999999999999999999999999999999998766999999 99999999999865

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=4.6e-52  Score=363.48  Aligned_cols=217  Identities=28%  Similarity=0.430  Sum_probs=198.0

Q ss_pred             ccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCC-CCCCccccC
Q 035615            4 YQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTG-DYPLGFKLG   78 (223)
Q Consensus         4 p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~-~~~~~~~l~   78 (223)
                      |+||||++.++|+||||+++++++||    +||+++.+||||+++++|++.|++..+++.+++|.|.... ....+.++.
T Consensus        75 ~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~  154 (330)
T 2gcg_A           75 ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLT  154 (330)
T ss_dssp             TTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCT
T ss_pred             CCceEEEECCcccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCC
Confidence            99999999999999999999999998    6999999999999999999999999999999999997421 112467899


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      |++|||||+|.||+.+|++++++|++|++||++.....     +.. ..++++++++||+|++|+|.+++|+++++++.+
T Consensus       155 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-~~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~  233 (330)
T 2gcg_A          155 QSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAE-FVSTPELAAQSDFIVVACSLTPATEGLCNKDFF  233 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCE-ECCHHHHHHHCSEEEECCCCCTTTTTCBSHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCce-eCCHHHHHhhCCEEEEeCCCChHHHHhhCHHHH
Confidence            99999999999999999999999999999998765321     222 238999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCCCCCCceEEccCCCCCCCC
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP-KEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~-~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      +.||++++|||++||+++|+++|.++|+++++.||++|||++||++. +|||++|||++|||+|+.|.+
T Consensus       234 ~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~~  302 (330)
T 2gcg_A          234 QKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHR  302 (330)
T ss_dssp             HHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBHH
T ss_pred             hcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcHH
Confidence            99999999999999999999999999999999999999999999765 499999999999999999854

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=2.1e-52  Score=366.25  Aligned_cols=218  Identities=31%  Similarity=0.502  Sum_probs=198.1

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCC----CC-CCCCC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWA----KT-GDYPL   73 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~----~~-~~~~~   73 (223)
                      +|+||||++.++|+||||+++++++||    +||+++.+||||+++++|++.|++..+++.+++|.|.    .. .....
T Consensus        65 ~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~  144 (334)
T 2dbq_A           65 APKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFL  144 (334)
T ss_dssp             CTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTC
T ss_pred             CCCceEEEECCcccccccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccccccccccc
Confidence            799999999999999999999999998    6999999999999999999999999999999999996    11 11123


Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----CcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      +.++.|++|||||+|.||+.+|++++++|++|++|||++....    +. ...++++++++||+|++|+|.+++|+++++
T Consensus       145 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~-~~~~l~~~l~~aDvVil~vp~~~~t~~~i~  223 (334)
T 2dbq_A          145 GYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNA-EFKPLEDLLRESDFVVLAVPLTRETYHLIN  223 (334)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHCC-EECCHHHHHHHCSEEEECCCCCTTTTTCBC
T ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcchhhHhhcCc-ccCCHHHHHhhCCEEEECCCCChHHHHhhC
Confidence            6789999999999999999999999999999999999876511    22 245899999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615          150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      ++.++.||++++|||+|||.++|+++|.++|++|++.||++|||++||...+|||.+|||++|||+|+.|.+
T Consensus       224 ~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP~~~~~L~~~~~vi~tPh~~~~t~~  295 (334)
T 2dbq_A          224 EERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFG  295 (334)
T ss_dssp             HHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCCHHHHHCTTEEECSSCTTCSHH
T ss_pred             HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCCCCCchhhcCCCEEECCccCCCcHH
Confidence            999999999999999999999999999999999999999999999999334599999999999999999864

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.1e-52  Score=372.33  Aligned_cols=198  Identities=19%  Similarity=0.288  Sum_probs=181.6

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      +|+||||++.++|+||||.++++++||    +||+|+.+||||+++++|++.|+            |        +.+|+
T Consensus        56 ~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~------------~--------~~~l~  115 (380)
T 2o4c_A           56 GSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEV------------R--------GADLA  115 (380)
T ss_dssp             TSCCCEEEECSSCSTTBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHH------------H--------TCCGG
T ss_pred             CCCceEEEEcCcccchhhHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhh------------h--------hcccC
Confidence            699999999999999999999999998    69999999999999999999986            2        24699


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChh----hhhccCHHHHh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQ----THHIINKDVMA  154 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~----t~~li~~~~l~  154 (223)
                      |+||||||+|+||+.+|+++++||++|++||++...........++++++++||+|++|+|++++    |+++++++.|+
T Consensus       116 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~  195 (380)
T 2o4c_A          116 ERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLA  195 (380)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHHSTTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhhccCcccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHh
Confidence            99999999999999999999999999999997653221112357899999999999999999999    99999999999


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615          155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       155 ~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      .||+|++|||+|||+++|+++|+++|++|+|.+|+||||++||+++++|+.. |+++|||+||+|.+
T Consensus       196 ~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~~-nvi~TPHiag~t~e  261 (380)
T 2o4c_A          196 ALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPELAAR-CLIATPHIAGYSLE  261 (380)
T ss_dssp             TSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHTT-CSEECSSCTTCCHH
T ss_pred             hCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCCchhhccC-CEEEccccCcCCHH
Confidence            9999999999999999999999999999999999999999999877788874 99999999999965

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=6.4e-51  Score=376.05  Aligned_cols=216  Identities=25%  Similarity=0.388  Sum_probs=199.5

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      +|+||||++.++|+||+|++++.++||    +|++|+.+||||+++++|++.|+++.+++.+++|.|.+.. + .+.+|+
T Consensus        64 ~~~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~-~-~~~~l~  141 (529)
T 1ygy_A           64 APKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSS-F-SGTEIF  141 (529)
T ss_dssp             CTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGG-C-CBCCCT
T ss_pred             CCCCcEEEECCcCcCccCHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccC-c-CccccC
Confidence            799999999999999999999999998    7999999999999999999999999999999999997431 2 467899


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA  154 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~  154 (223)
                      |+||||||+|+||+.+|++++++|++|++||++.....    ++. ..++++++++||+|++|+|.+++|+++++++.++
T Consensus       142 g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~  220 (529)
T 1ygy_A          142 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIE-LLSLDDLLARADFISVHLPKTPETAGLIDKEALA  220 (529)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHT
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCcE-EcCHHHHHhcCCEEEECCCCchHHHHHhCHHHHh
Confidence            99999999999999999999999999999998764211    232 2489999999999999999999999999999999


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615          155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW  221 (223)
Q Consensus       155 ~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~  221 (223)
                      .||+|+++||++||.++|+++|+++|++|++.||++|||+.||..++|||+++|+++|||+++.|.+
T Consensus       221 ~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~e  287 (529)
T 1ygy_A          221 KTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAE  287 (529)
T ss_dssp             TSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHH
T ss_pred             CCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHH
Confidence            9999999999999999999999999999999999999999999877799999999999999988754

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.98  E-value=2.3e-34  Score=260.99  Aligned_cols=193  Identities=11%  Similarity=0.136  Sum_probs=165.5

Q ss_pred             CccceEEE-EccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCcccc
Q 035615            3 CYQTNLYA-CILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKL   77 (223)
Q Consensus         3 ~p~Lk~i~-~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l   77 (223)
                      .|+++.|+ .+++|+|++  +++.++||    ++++|. +|||       ++.|++....+.+++| |.+.    .+.++
T Consensus       191 ~~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r~----~~~~l  255 (479)
T 1v8b_A          191 AKKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMRA----TDFLI  255 (479)
T ss_dssp             HTTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHHH----HCCCC
T ss_pred             hcCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhhc----ccccc
Confidence            37888888 689999998  78889998    488898 9999       4567877777888888 8632    34679


Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-----CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      .|++|||||+|.||+.+|+++++||++|+++|+++...     .++ ...++++++++||+|++|+    .|+++|+++.
T Consensus       256 ~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~-~~~~l~ell~~aDiVi~~~----~t~~lI~~~~  330 (479)
T 1v8b_A          256 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGF-NVVTLDEIVDKGDFFITCT----GNVDVIKLEH  330 (479)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTC-EECCHHHHTTTCSEEEECC----SSSSSBCHHH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCC-EecCHHHHHhcCCEEEECC----ChhhhcCHHH
Confidence            99999999999999999999999999999999987542     133 3568999999999999995    6899999999


Q ss_pred             HhcCCCCcEEEEcCCCcc-cCHHHHHH--HHHcCCceEEEeeCCCCCCCCCCCCCCC--CceEEccCCC-CCC
Q 035615          153 MAELGKGGMIINVGRGAL-IDEKEMLQ--FLVQGDINGVGLDVFENDPNVPKEPLRL--DNIVLLPCQN-ALT  219 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~-vd~~al~~--aL~~~~i~~a~lDV~~~EP~~~~~l~~~--~nv~~TPH~a-~~t  219 (223)
                      |+.||+|++|||+|||++ ||+++|.+  +|++|+|. +++|||+.++  .+|||.+  ||+++| |+| +.+
T Consensus       331 l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~plp~--~~~l~~l~~~nvv~t-H~atghp  399 (479)
T 1v8b_A          331 LLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRITLPN--GNKIIVLARGRLLNL-GCATGHP  399 (479)
T ss_dssp             HTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEECTT--SCEEEEEGGGSBHHH-HSSCCSC
T ss_pred             HhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEEECCC--CCeeeEecCCCEEEE-eccCCCC
Confidence            999999999999999999 99999999  99999998 8999984322  4589988  999999 999 544

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.98  E-value=1.1e-34  Score=263.89  Aligned_cols=190  Identities=14%  Similarity=0.113  Sum_probs=158.3

Q ss_pred             ccceEEE-EccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            4 YQTNLYA-CILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         4 p~Lk~i~-~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      |+++.|+ .+++|+|++  +++.++||    ++++|. +|||+.       .|++....+.+.+| |...    .+.++.
T Consensus       212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~l-------~r~~~~~~~~l~~g-w~~~----~g~~L~  276 (494)
T 3d64_A          212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKSK-------FDNLYGCRESLVDG-IKRA----TDVMIA  276 (494)
T ss_dssp             TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHH-------HHHHHHHHTTHHHH-HHHH----HCCCCT
T ss_pred             hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHHH-------HhhhHhhhhhhhhh-hhhc----cccccC
Confidence            7889998 689999998  77889998    478999 999954       35555555555555 7532    356799


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-----CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      |++|||||+|.||+.+|+++++||++|++||+++...     .++ ...++++++++||+|++|+    .|+++|+++.|
T Consensus       277 GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~-~~~~l~ell~~aDiVi~~~----~t~~lI~~~~l  351 (494)
T 3d64_A          277 GKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGY-RVVTMEYAADKADIFVTAT----GNYHVINHDHM  351 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTC-EECCHHHHTTTCSEEEECS----SSSCSBCHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCC-EeCCHHHHHhcCCEEEECC----CcccccCHHHH
Confidence            9999999999999999999999999999999987532     122 3468999999999999997    57899999999


Q ss_pred             hcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCCCCC--CceEEccCCC-CCC
Q 035615          154 AELGKGGMIINVGRGAL-IDEKEMLQFLVQGDINGVGLDVFENDPNVP-KEPLRL--DNIVLLPCQN-ALT  219 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~-vd~~al~~aL~~~~i~~a~lDV~~~EP~~~-~~l~~~--~nv~~TPH~a-~~t  219 (223)
                      +.||+|++|||+|||++ ||+++| ++|++|+|+ +++|   .||+++ +|||.+  ||+++| |+| +.|
T Consensus       352 ~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~D---v~plp~~~pL~~l~~~nvv~t-H~atg~~  416 (494)
T 3d64_A          352 KAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVD---HIIFPDGKRVILLAEGRLVNL-GCATGHP  416 (494)
T ss_dssp             HHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEE---EEECTTSCEEEEEGGGSBHHH-HTSCCSC
T ss_pred             hhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEE---EEECCCCCchhhcCCCCEEEE-eCcCCCC
Confidence            99999999999999999 699999 999999997 4445   556654 589998  999999 999 555

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.91  E-value=1.8e-24  Score=185.68  Aligned_cols=137  Identities=17%  Similarity=0.181  Sum_probs=118.0

Q ss_pred             CccceEEEEccccchhHhH-HHHHhcCC----CC------CCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCC
Q 035615            3 CYQTNLYACILSEYQNWLK-QLIKQKSI----AK------QADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDY   71 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~-~~~~~~~i----~~------~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~   71 (223)
                      +|+||+|+   +|+||+|+ ++++++||    ++      ++|+.+|||++++++|..                      
T Consensus        94 ~~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~----------------------  148 (293)
T 3d4o_A           94 TPNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH----------------------  148 (293)
T ss_dssp             SCTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH----------------------
T ss_pred             CCCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHh----------------------
Confidence            78999997   89999998 89999998    35      789999999999998863                      


Q ss_pred             CCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc--ccChhhhhcCCcEEEEeccCChhh
Q 035615           72 PLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY--CANVYDLAVNSDVLVVCCALTEQT  144 (223)
Q Consensus        72 ~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~--~~~l~el~~~aDiv~~~~p~t~~t  144 (223)
                       .+.++.|++|||||+|.||+.+|++++++|++|+++||++.+..     +...  ..+++++++++|+|++|+|.    
T Consensus       149 -~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~----  223 (293)
T 3d4o_A          149 -TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA----  223 (293)
T ss_dssp             -CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS----
T ss_pred             -cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh----
Confidence             12468999999999999999999999999999999999865321     2221  25788999999999999995    


Q ss_pred             hhccCHHHHhcCCCCcEEEEcCCCcc
Q 035615          145 HHIINKDVMAELGKGGMIINVGRGAL  170 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~arg~~  170 (223)
                       ++++++.++.||+++++||++||+.
T Consensus       224 -~~i~~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          224 -LVVTANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             -CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred             -HHhCHHHHHhcCCCCEEEEecCCCC
Confidence             6889999999999999999999765

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.88  E-value=1.1e-24  Score=198.70  Aligned_cols=193  Identities=12%  Similarity=0.091  Sum_probs=147.7

Q ss_pred             cceEEE-EccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCC
Q 035615            5 QTNLYA-CILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGG   79 (223)
Q Consensus         5 ~Lk~i~-~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g   79 (223)
                      +++-+. .+++|+|++  .++.++|+    ++++|. +|||+.       .|++.........+ |.+.    .+..+.|
T Consensus       210 ~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~~-------~r~l~~~~~s~~~g-~~r~----~~~~l~G  274 (494)
T 3ce6_A          210 SVKGVTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKSK-------FDNKYGTRHSLIDG-INRG----TDALIGG  274 (494)
T ss_dssp             HCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHT-------THHHHHHHHHHHHH-HHHH----HCCCCTT
T ss_pred             CeEEEEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHHH-------HhhhhhhhhhhhHH-HHhc----cCCCCCc
Confidence            334343 589999998  66778888    477888 999953       33333333333333 4321    1235889


Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-----CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA  154 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~  154 (223)
                      ++|+|+|+|.||+.+|++++++|++|+++++++.+.     .++. ..+++++++.+|+|+.|++    +.++++++.++
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~-~~~l~e~l~~aDvVi~atg----t~~~i~~~~l~  349 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFD-VVTVEEAIGDADIVVTATG----NKDIIMLEHIK  349 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHGGGCSEEEECSS----SSCSBCHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCE-EecHHHHHhCCCEEEECCC----CHHHHHHHHHH
Confidence            999999999999999999999999999999987542     2332 4578899999999999975    56688889999


Q ss_pred             cCCCCcEEEEcCCCcc-cCHHHHHH-HHHcCCceEEEeeCCCCCCCCCC--CCCCCCceE----EccCCCCCC
Q 035615          155 ELGKGGMIINVGRGAL-IDEKEMLQ-FLVQGDINGVGLDVFENDPNVPK--EPLRLDNIV----LLPCQNALT  219 (223)
Q Consensus       155 ~mk~ga~lIN~arg~~-vd~~al~~-aL~~~~i~~a~lDV~~~EP~~~~--~l~~~~nv~----~TPH~a~~t  219 (223)
                      .||++++++|++|+.. +|+++|.+ +|+++++. +.+|+|+.++. ..  .++..+|++    +|||+++.+
T Consensus       350 ~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~-~~~l~LL~~grlvnL~~~TPH~a~~~  420 (494)
T 3ce6_A          350 AMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDT-GRSIIVLSEGRLLNLGNATGHPSFVM  420 (494)
T ss_dssp             HSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTT-CCEEEEEGGGSCHHHHHSCCSCHHHH
T ss_pred             hcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCc-chHHHHHhCCCEEeccCCCCCccccc
Confidence            9999999999999999 99999998 88888887 67899876432 23  467778888    999997644

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.84  E-value=1.5e-21  Score=173.11  Aligned_cols=188  Identities=10%  Similarity=0.121  Sum_probs=141.5

Q ss_pred             CCccceEEEEccccchhHhHHHHHhcCCC-------C--CCC---cchHHHHHHHHHHHHH-hCCcHHHHHHHcCCCCCC
Q 035615            2 LCYQTNLYACILSEYQNWLKQLIKQKSIA-------K--QAD---LPIVADLAIGLLIDFL-RRISPGNWYVRAGLWAKT   68 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i~-------~--~~~---~~~vAE~~~~~~l~~~-r~~~~~~~~~~~~~w~~~   68 (223)
                      ++|+..++.....++|..+++.+.++|++       +  ..+   -.++||++..+++.+. |++..    ...|+|...
T Consensus        85 l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s~~ae~ag~~a~~~a~r~l~~----~~~g~~~~~  160 (377)
T 2vhw_A           85 LRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLAPMSEVAGRLAAQVGAYHLMR----TQGGRGVLM  160 (377)
T ss_dssp             CCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHHHHTSG----GGTSCCCCT
T ss_pred             cCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCccccCchHHHHHHHHHHHHHHHHHH----hcCCCcccc
Confidence            46776677767788999999999998872       1  012   2467899985554444 76633    334443322


Q ss_pred             CCCCCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------Ccc------cccChhhhhcCCcEEEE
Q 035615           69 GDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFP------YCANVYDLAVNSDVLVV  136 (223)
Q Consensus        69 ~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~------~~~~l~el~~~aDiv~~  136 (223)
                      .   ...++.|++|+|+|+|.||+.+++.++++|++|+++|+++.+.+      +..      ...+++++++.+|+|+.
T Consensus       161 ~---~~~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~  237 (377)
T 2vhw_A          161 G---GVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIG  237 (377)
T ss_dssp             T---CBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEE
T ss_pred             c---CCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEE
Confidence            1   12368999999999999999999999999999999998865421      111      13457788899999999


Q ss_pred             ec--cCChhhhhccCHHHHhcCCCCcEEEEcC--CCcccCHHHHHHHHHcCCceEEEeeCCCC-CCCCC-CCCCCCCceE
Q 035615          137 CC--ALTEQTHHIINKDVMAELGKGGMIINVG--RGALIDEKEMLQFLVQGDINGVGLDVFEN-DPNVP-KEPLRLDNIV  210 (223)
Q Consensus       137 ~~--p~t~~t~~li~~~~l~~mk~ga~lIN~a--rg~~vd~~al~~aL~~~~i~~a~lDV~~~-EP~~~-~~l~~~~nv~  210 (223)
                      ++  |.+ ++.++++++.++.||+|+++||++  +|+                      ||+. ||.+. .|+|..+|++
T Consensus       238 ~~~~p~~-~t~~li~~~~l~~mk~g~~iV~va~~~Gg----------------------v~e~~ep~~~~~~~~~~~~v~  294 (377)
T 2vhw_A          238 AVLVPGA-KAPKLVSNSLVAHMKPGAVLVDIAIDQGG----------------------CFEGSRPTTYDHPTFAVHDTL  294 (377)
T ss_dssp             CCCCTTS-CCCCCBCHHHHTTSCTTCEEEEGGGGTTC----------------------SBTTCCCBCSSSCEEEETTEE
T ss_pred             CCCcCCC-CCcceecHHHHhcCCCCcEEEEEecCCCC----------------------ccccccCCCCCCCEEEECCEE
Confidence            77  544 678899999999999999999999  332                      7887 88654 4899999998


Q ss_pred             --EccCCCCCC
Q 035615          211 --LLPCQNALT  219 (223)
Q Consensus       211 --~TPH~a~~t  219 (223)
                        .|||+++.+
T Consensus       295 i~~~phl~~~~  305 (377)
T 2vhw_A          295 FYCVANMPASV  305 (377)
T ss_dssp             EECBTTGGGGS
T ss_pred             EEecCCcchhh
Confidence              999999876

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.84  E-value=3.4e-21  Score=165.67  Aligned_cols=144  Identities=14%  Similarity=0.159  Sum_probs=112.0

Q ss_pred             CCccceEEEEccccchhHh-HHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccc
Q 035615            2 LCYQTNLYACILSEYQNWL-KQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFK   76 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id-~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~   76 (223)
                      .+|++|+|+   +|+||+| ++++.++||    +|+++  ++         ++.|+++..     +|.|..... ..+.+
T Consensus        95 ~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~-----~g~~~~~~~-~~~~~  154 (300)
T 2rir_A           95 RTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTV-----EGTIMLAIQ-HTDYT  154 (300)
T ss_dssp             TSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHH-----HHHHHHHHH-TCSSC
T ss_pred             hcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHH-----HHHHHHHHH-hcCCC
Confidence            378999987   8999999 899999998    35553  23         234544333     334531100 13567


Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccc--cccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFP--YCANVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~--~~~~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      +.|+||||||+|.||+.+|++++++|++|+++||++++..     +..  ...++++++++||+|++|+|.     ++++
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~~i~  229 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-----MILN  229 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-----CCBC
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-----hhhC
Confidence            9999999999999999999999999999999999864321     222  135788999999999999995     6889


Q ss_pred             HHHHhcCCCCcEEEEcCCCcc
Q 035615          150 KDVMAELGKGGMIINVGRGAL  170 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~arg~~  170 (223)
                      ++.++.||+++++||++||+.
T Consensus       230 ~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          230 QTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             HHHHTTSCTTCEEEECSSTTC
T ss_pred             HHHHHhCCCCCEEEEEeCCCC
Confidence            999999999999999999864

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.82  E-value=2.2e-22  Score=180.25  Aligned_cols=131  Identities=21%  Similarity=0.236  Sum_probs=105.0

Q ss_pred             ccc-cCCCEEEEEecChHHHHHHHHHHh-CCCEEEEEcCCCCCCCCcccccChhhhhcCCcE-EEEeccCChhhhhccCH
Q 035615           74 GFK-LGGMQVGIVRLGNIGSEVLNRLQA-FGFIISYNSRRKRPSVLFPYCANVYDLAVNSDV-LVVCCALTEQTHHIINK  150 (223)
Q Consensus        74 ~~~-l~g~~vgIiG~G~iG~~~a~~l~~-~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDi-v~~~~p~t~~t~~li~~  150 (223)
                      +.+ |+|+||||+|+|+||+.+|+++++ ||++|++++++...... ....+++++++.+|. .++ +|+ ++|++ ++.
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~~~-~~gvdl~~L~~~~d~~~~l-~~l-~~t~~-i~~  281 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYN-PDGLNADEVLKWKNEHGSV-KDF-PGATN-ITN  281 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEE-EEEECHHHHHHHHHHHSSS-TTC-TTSEE-ECH
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccccC-ccCCCHHHHHHHHHhcCEe-ecC-ccCee-eCH
Confidence            345 999999999999999999999999 99999998544321111 112367777665543 222 566 57788 788


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC--CCCCCCceEEccCC
Q 035615          151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK--EPLRLDNIVLLPCQ  215 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~--~l~~~~nv~~TPH~  215 (223)
                      +.|..||+ .+|||++||.+||+++ +++|+.+.|.+++     +||++++  +||.++||++|||+
T Consensus       282 ~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V~itPhi  341 (419)
T 1gtm_A          282 EELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGILQIPDF  341 (419)
T ss_dssp             HHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTCEEECHH
T ss_pred             HHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCEEEECch
Confidence            89999998 5999999999999999 6999999999877     8997653  89999999999999

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.73  E-value=2.5e-18  Score=153.81  Aligned_cols=100  Identities=16%  Similarity=0.189  Sum_probs=87.1

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-----CCcccccChhhhhcCCcEEEEeccCChhhhhcc
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHII  148 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li  148 (223)
                      +.++.|||++|+|+|.||+.+|+++++||++|+++++++...     .++ ...++++++++||+|+++.    .|.++|
T Consensus       242 g~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~-~vv~LeElL~~ADIVv~at----gt~~lI  316 (464)
T 3n58_A          242 DVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGF-EVVTLDDAASTADIVVTTT----GNKDVI  316 (464)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTC-EECCHHHHGGGCSEEEECC----SSSSSB
T ss_pred             CCcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCc-eeccHHHHHhhCCEEEECC----CCcccc
Confidence            346999999999999999999999999999999998876432     122 3468999999999999864    478999


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 035615          149 NKDVMAELGKGGMIINVGRGAL-IDEKEMLQ  178 (223)
Q Consensus       149 ~~~~l~~mk~ga~lIN~arg~~-vd~~al~~  178 (223)
                      +++.|+.||+|++|||+|||.. +|.++|.+
T Consensus       317 ~~e~l~~MK~GAILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          317 TIDHMRKMKDMCIVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             CHHHHHHSCTTEEEEECSSSTTTBTCGGGTT
T ss_pred             CHHHHhcCCCCeEEEEcCCCCcccCHHHHHh
Confidence            9999999999999999999998 99999874

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.71  E-value=1.2e-17  Score=149.33  Aligned_cols=102  Identities=15%  Similarity=0.200  Sum_probs=88.2

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----CcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      +.++.|++|||+|+|.||+.+|++|+++|++|+++++++....    ......+++|++++||+|++    ++.|.++|+
T Consensus       206 g~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~ADVVil----t~gt~~iI~  281 (436)
T 3h9u_A          206 DVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVT----TTGNDDIIT  281 (436)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEE----CSSCSCSBC
T ss_pred             CCcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCCEEEE----CCCCcCccC
Confidence            3568999999999999999999999999999999999764321    11235689999999999996    346789999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcc-cCHHHHHHH
Q 035615          150 KDVMAELGKGGMIINVGRGAL-IDEKEMLQF  179 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~arg~~-vd~~al~~a  179 (223)
                      ++.|+.||+|++|||+|||.+ ||.++|.+.
T Consensus       282 ~e~l~~MK~gAIVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          282 SEHFPRMRDDAIVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             TTTGGGCCTTEEEEECSSSGGGBCHHHHHHH
T ss_pred             HHHHhhcCCCcEEEEeCCCCCccCHHHHHhh
Confidence            999999999999999999997 999999864

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.70  E-value=3.3e-18  Score=152.78  Aligned_cols=170  Identities=14%  Similarity=0.143  Sum_probs=120.5

Q ss_pred             CCccceEEEEccccchhHhHHHHHhcCCCCCCCcchHHHHHHHHHHHHHhCCcHH--HHHHHcCCCCCCCCCC-C---cc
Q 035615            2 LCYQTNLYACILSEYQNWLKQLIKQKSIAKQADLPIVADLAIGLLIDFLRRISPG--NWYVRAGLWAKTGDYP-L---GF   75 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i~~~~~~~~vAE~~~~~~l~~~r~~~~~--~~~~~~~~w~~~~~~~-~---~~   75 (223)
                      +.|++++|.....|+|++|++++.++||+- .+.+.|+|++.++.|.+++.+...  +..++.+.|.....+. .   ..
T Consensus        90 l~~~~~li~~~~~~~d~~~~~al~~~gI~v-~~~e~v~~~~~a~~l~~l~~~a~~ag~~av~~~~~~~~~~~~~~~~~~g  168 (401)
T 1x13_A           90 LNPGTTLVSFIWPAQNPELMQKLAERNVTV-MAMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAAG  168 (401)
T ss_dssp             CCTTCEEEECCCGGGCHHHHHHHHHTTCEE-EEGGGCCCSGGGGGGCHHHHHHHHHHHHHHHHHHHHCSSCSSCEEETTE
T ss_pred             hcCCCcEEEEecCCCCHHHHHHHHHCCCEE-EEeehhhhhhhhcccchHHHHHHHHHHHHHHHHHHhcccccCCceeecc
Confidence            458999999999999999999999999954 445666665555432222222211  2233333221100000 0   11


Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccccc---------------------------cC
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYC---------------------------AN  123 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~---------------------------~~  123 (223)
                      ++.|++|+|+|+|.||..+++.++++|++|+++|+++...+     +....                           .+
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (401)
T 1x13_A          169 KVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMEL  248 (401)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHH
Confidence            58899999999999999999999999999999999875421     22111                           13


Q ss_pred             hhhhhcCCcEEEEe--ccCChhhhhccCHHHHhcCCCCcEEEEcC--CCcccCH
Q 035615          124 VYDLAVNSDVLVVC--CALTEQTHHIINKDVMAELGKGGMIINVG--RGALIDE  173 (223)
Q Consensus       124 l~el~~~aDiv~~~--~p~t~~t~~li~~~~l~~mk~ga~lIN~a--rg~~vd~  173 (223)
                      ++++++.+|+|+.+  +|.. .+..+++++.++.||+|+++||++  ||+.+++
T Consensus       249 l~e~~~~aDvVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~  301 (401)
T 1x13_A          249 FAAQAKEVDIIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY  301 (401)
T ss_dssp             HHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred             HHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence            67888899999999  4532 356788999999999999999999  9888765

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.69  E-value=1.5e-17  Score=146.82  Aligned_cols=190  Identities=13%  Similarity=0.183  Sum_probs=121.3

Q ss_pred             CCccceEEEEccccchhHhHHHHHhcCCC-------CCC-Cc----chHHHHHH--HHHHHHHhCCcHHHHHHHcCCCCC
Q 035615            2 LCYQTNLYACILSEYQNWLKQLIKQKSIA-------KQA-DL----PIVADLAI--GLLIDFLRRISPGNWYVRAGLWAK   67 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i~-------~~~-~~----~~vAE~~~--~~~l~~~r~~~~~~~~~~~~~w~~   67 (223)
                      +.|+.++|.....+.|..+++.+.++|++       +.. ..    .+++|.+-  +.++++ +.+.....  .++.|..
T Consensus        83 l~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~a~-~~l~~~~~--g~~~~~~  159 (369)
T 2eez_A           83 LREGLILFTYLHLAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQVGA-QFLEKPKG--GRGVLLG  159 (369)
T ss_dssp             CCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHHHH-HHTSGGGT--SCCCCTT
T ss_pred             cCCCcEEEEEecccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHHHH-HHHHHhcC--CCceecC
Confidence            35888999999999999999999999982       221 11    34454443  333332 22332211  1112221


Q ss_pred             CCCCCCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------Ccc------cccChhhhhcCCcEEE
Q 035615           68 TGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFP------YCANVYDLAVNSDVLV  135 (223)
Q Consensus        68 ~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~------~~~~l~el~~~aDiv~  135 (223)
                           ...++.+++|+|+|.|.||+.+++.++++|++|+++|+++.+.+      +..      ...+++++++.+|+|+
T Consensus       160 -----~~~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi  234 (369)
T 2eez_A          160 -----GVPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLI  234 (369)
T ss_dssp             -----CBTBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEE
T ss_pred             -----CCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEE
Confidence                 12468999999999999999999999999999999998764321      111      1245677888999999


Q ss_pred             EeccCCh-hhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCC-CCCCCCCCceE---
Q 035615          136 VCCALTE-QTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNV-PKEPLRLDNIV---  210 (223)
Q Consensus       136 ~~~p~t~-~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~-~~~l~~~~nv~---  210 (223)
                      .+++... .+..++.++.++.||+++++||++-.             .|   |+ +|++  ||.+ +.|++..+++.   
T Consensus       235 ~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~-------------~g---g~-~d~~--ep~~~~~~~~~~~~v~~~~  295 (369)
T 2eez_A          235 GAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVD-------------QG---GC-VETI--RPTTHAEPTYVVDGVVHYG  295 (369)
T ss_dssp             ECCC-------CCSCHHHHTTSCTTCEEEECC--------------------------------------CEETTEEEEC
T ss_pred             ECCCCCccccchhHHHHHHHhhcCCCEEEEEecC-------------CC---CC-CCcc--cCCCCCCCEEEECCEEEEe
Confidence            9998665 57788899999999999999999821             12   44 8998  6644 45888899999   


Q ss_pred             ------EccCCCCC
Q 035615          211 ------LLPCQNAL  218 (223)
Q Consensus       211 ------~TPH~a~~  218 (223)
                            .|||+|+.
T Consensus       296 v~~lp~~~p~~as~  309 (369)
T 2eez_A          296 VANMPGAVPRTSTF  309 (369)
T ss_dssp             CSCSGGGSHHHHHH
T ss_pred             eCCcchhcHHHHHH
Confidence                  88997753

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.65  E-value=1.1e-16  Score=142.97  Aligned_cols=98  Identities=17%  Similarity=0.358  Sum_probs=84.9

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-----CCcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      ..+.|++++|+|+|.||+.+|+++++||++|+++++++...     .++ ...+++++++++|+|++|    +.|.++|+
T Consensus       216 ~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~-~v~~Leeal~~ADIVi~a----tgt~~lI~  290 (435)
T 3gvp_A          216 MMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGF-RLVKLNEVIRQVDIVITC----TGNKNVVT  290 (435)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-EECCHHHHTTTCSEEEEC----SSCSCSBC
T ss_pred             ceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCC-EeccHHHHHhcCCEEEEC----CCCcccCC
Confidence            46899999999999999999999999999999999876321     122 356899999999999995    35789999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcc-cCHHHHH
Q 035615          150 KDVMAELGKGGMIINVGRGAL-IDEKEML  177 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~arg~~-vd~~al~  177 (223)
                      ++.|+.||+|++|||+|||.. +|.++|.
T Consensus       291 ~e~l~~MK~gailINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          291 REHLDRMKNSCIVCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             HHHHHHSCTTEEEEECSSTTTTBTGGGGC
T ss_pred             HHHHHhcCCCcEEEEecCCCccCCHHHHH
Confidence            999999999999999999998 7877764

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.59  E-value=4.7e-15  Score=127.35  Aligned_cols=112  Identities=13%  Similarity=0.193  Sum_probs=94.9

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      .++|||||+|.||..+|++|...|++|++|||++++.+     +.....++.|+++.||+|++++|..+..+.++..+.+
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~   84 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELV   84 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHH
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHH
Confidence            36899999999999999999999999999999887654     3445689999999999999999988888888888899


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV  192 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV  192 (223)
                      ..++++.++|+++....-+...+.+.+++..+.  ++|.
T Consensus        85 ~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~--~lda  121 (297)
T 4gbj_A           85 EKLGKDGVHVSMSTISPETSRQLAQVHEWYGAH--YVGA  121 (297)
T ss_dssp             HHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             hhcCCCeEEEECCCCChHHHHHHHHHHHhcCCc--eecC
Confidence            999999999999999999999999999999887  6774

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.58  E-value=1.7e-15  Score=130.31  Aligned_cols=111  Identities=13%  Similarity=0.220  Sum_probs=97.7

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccC--HHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN--KDV  152 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~--~~~  152 (223)
                      ++||+||+|.||..||++|...|++|.+|||++++.+     ++....++.|+++.||+|++|+|..+..+.++.  ...
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~   83 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   83 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence            5899999999999999999999999999999976543     556678999999999999999998888887763  347


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615          153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV  192 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV  192 (223)
                      ++.+++|.++||++....-+...+.+.+++..+.  ++|.
T Consensus        84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~--~lDa  121 (300)
T 3obb_A           84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  121 (300)
T ss_dssp             TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEec
Confidence            7889999999999999999999999999999887  7784

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.55  E-value=5.4e-17  Score=144.99  Aligned_cols=184  Identities=16%  Similarity=0.151  Sum_probs=130.5

Q ss_pred             CccceEEEEccccchhHhHHHHH-----hcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCC-CC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIK-----QKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGD-YP   72 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~-----~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~-~~   72 (223)
                      .+.+++|..+++|+|++++.+..     +.++    .+|. ..+++++.+..++.+.|++...... ..+.|..... ..
T Consensus        79 ~~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~-~~~~~s~a~~av~  156 (404)
T 1gpj_A           79 SEAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRI-SEGAVSIGSAAVE  156 (404)
T ss_dssp             HHHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSST-TCSCCSHHHHHHH
T ss_pred             chHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhh-cCCCccHHHHHHH
Confidence            46678888999999999876554     4444    3566 5789999999999999987554322 2334421000 00


Q ss_pred             Cc----cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC------Ccc--cccChhhhhcCCcEEEEecc
Q 035615           73 LG----FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV------LFP--YCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        73 ~~----~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~~~--~~~~l~el~~~aDiv~~~~p  139 (223)
                      ..    .++.|++|+|+|+|.||+.+++.++.+|+ +|++++|+..+..      +..  ...++.+++..+|+|+.|+|
T Consensus       157 ~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~  236 (404)
T 1gpj_A          157 LAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATA  236 (404)
T ss_dssp             HHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCS
T ss_pred             HHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccC
Confidence            11    14789999999999999999999999999 8999999875421      221  23467788899999999987


Q ss_pred             CChhhhhccCHHHHhc--CC----CCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCC-CCCCCCCCceEE-
Q 035615          140 LTEQTHHIINKDVMAE--LG----KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNV-PKEPLRLDNIVL-  211 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~--mk----~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~-~~~l~~~~nv~~-  211 (223)
                      .+   ..+++++.++.  ||    ++.++||++                             +|.. +++++++|||++ 
T Consensus       237 ~~---~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i~~~l~~l~~v~l~  284 (404)
T 1gpj_A          237 AP---HPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDVEEGVENIEDVEVR  284 (404)
T ss_dssp             SS---SCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSBCTTGGGSTTEEEE
T ss_pred             CC---CceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCCCccccccCCeEEE
Confidence            43   56677777776  42    445666654                             3543 458999999999 


Q ss_pred             -ccCCCCCCC
Q 035615          212 -LPCQNALTH  220 (223)
Q Consensus       212 -TPH~a~~t~  220 (223)
                       +||++..+.
T Consensus       285 d~d~l~~~~~  294 (404)
T 1gpj_A          285 TIDDLRVIAR  294 (404)
T ss_dssp             EHHHHHHHHH
T ss_pred             eHhhHHHHHH
Confidence             999876543

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.54  E-value=1.5e-14  Score=128.28  Aligned_cols=166  Identities=11%  Similarity=0.134  Sum_probs=109.3

Q ss_pred             ccceEEEEccccchhHhHHHHHhcCCCC---CCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCC---CCCCCc-cc
Q 035615            4 YQTNLYACILSEYQNWLKQLIKQKSIAK---QADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKT---GDYPLG-FK   76 (223)
Q Consensus         4 p~Lk~i~~~~aG~d~id~~~~~~~~i~~---~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~---~~~~~~-~~   76 (223)
                      |.+++|.....+.|+.+++++.++||+-   ......+++..+. +|+..+.+ ..+..+..+.|...   +.+..+ .+
T Consensus        92 ~~~~~i~~~~~~~~~~~~~~~~~~gi~~~~~e~~~~~~~~~~l~-~l~~~a~~-ag~~av~~~~~~~~~~~~~~~~~~~~  169 (384)
T 1l7d_A           92 EGAVLMCHLGALTNRPVVEALTKRKITAYAMELMPRISRAQSMD-ILSSQSNL-AGYRAVIDGAYEFARAFPMMMTAAGT  169 (384)
T ss_dssp             TTCEEEEECCGGGCHHHHHHHHHTTCEEEEGGGCCCSGGGGGGC-HHHHHHHH-HHHHHHHHHHHHCSSCSSCEEETTEE
T ss_pred             cCCEEEEEecccCCHHHHHHHHHCCCEEEEeccccccccccccc-hhhHHHHH-HHHHHHHHHHHHhhhcccchhccCCC
Confidence            5688998899999999999999999831   1111111111222 12222221 11222222222100   000001 36


Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccccc---c--------------------------
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYC---A--------------------------  122 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~---~--------------------------  122 (223)
                      +.|++|+|+|.|.||+.+++.++++|++|+++|+++...+     +....   .                          
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~  249 (384)
T 1l7d_A          170 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  249 (384)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence            8999999999999999999999999999999999875421     21111   0                          


Q ss_pred             ChhhhhcCCcEEEEec--cCChhhhhccCHHHHhcCCCCcEEEEcC--CCcccC
Q 035615          123 NVYDLAVNSDVLVVCC--ALTEQTHHIINKDVMAELGKGGMIINVG--RGALID  172 (223)
Q Consensus       123 ~l~el~~~aDiv~~~~--p~t~~t~~li~~~~l~~mk~ga~lIN~a--rg~~vd  172 (223)
                      .++++++.+|+|+.++  |.+ .+..+++++.++.||+|+++||++  ||+.++
T Consensus       250 ~l~~~~~~aDvVi~~~~~pg~-~~~~li~~~~l~~mk~g~vivdva~~~gg~~~  302 (384)
T 1l7d_A          250 AVLKELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLAVEAGGNCP  302 (384)
T ss_dssp             HHHHHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETTGGGTCSST
T ss_pred             HHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCCEEEEEecCCCCCee
Confidence            1677889999999877  433 245688999999999999999999  876543

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.52  E-value=3.5e-14  Score=122.48  Aligned_cols=137  Identities=12%  Similarity=0.105  Sum_probs=92.2

Q ss_pred             HHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCC--CCC-----CCcccccChhhhh
Q 035615           57 NWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRK--RPS-----VLFPYCANVYDLA  128 (223)
Q Consensus        57 ~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~--~~~-----~~~~~~~~l~el~  128 (223)
                      ++..+.+.|..+..++.......++|||||+|.||+.+|+.|...|+ +|.+|||++  ...     .+.....++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~   81 (312)
T 3qsg_A            2 HHHHHHSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVA   81 (312)
T ss_dssp             -----------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHH
T ss_pred             CcccccccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHH
Confidence            45567777776655544444556899999999999999999999999 999999973  221     2444567889999


Q ss_pred             cCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC--CceEEEee--CCCCCC
Q 035615          129 VNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG--DINGVGLD--VFENDP  197 (223)
Q Consensus       129 ~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~--~i~~a~lD--V~~~EP  197 (223)
                      ++||+|++++|.....+. + ++..+.++++.++||+++.......++.+.+.+.  .+.  ++|  |+.++|
T Consensus        82 ~~aDvVi~~vp~~~~~~~-~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~--~vd~pv~g~~~  150 (312)
T 3qsg_A           82 GECDVIFSLVTAQAALEV-A-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQ--YAAVAVMSAVK  150 (312)
T ss_dssp             HHCSEEEECSCTTTHHHH-H-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCE--EEEEEECSCST
T ss_pred             hcCCEEEEecCchhHHHH-H-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCe--EEeccccCCch
Confidence            999999999997655543 3 6677889999999999999999999999999876  454  555  455443

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.50  E-value=3.3e-14  Score=123.02  Aligned_cols=114  Identities=14%  Similarity=0.161  Sum_probs=96.4

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCH-
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK-  150 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~-  150 (223)
                      ...++|||||+|.||+.+|+.|...|++|.+|||+++..+     +.....++++++++||+|++++|....++.++.. 
T Consensus        29 ~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~  108 (320)
T 4dll_A           29 PYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQ  108 (320)
T ss_dssp             CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTT
T ss_pred             cCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcch
Confidence            4567999999999999999999999999999999875422     4445678999999999999999977677776643 


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615          151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV  192 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV  192 (223)
                      +.++.++++.++||++++...+.+.+.+.+++..+.  ++|.
T Consensus       109 ~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~--~~~~  148 (320)
T 4dll_A          109 GVAAAMKPGSLFLDMASITPREARDHAARLGALGIA--HLDT  148 (320)
T ss_dssp             CHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCE--EEeC
Confidence            567789999999999999999999999999988776  4553

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.50  E-value=1.7e-14  Score=124.16  Aligned_cols=115  Identities=14%  Similarity=0.095  Sum_probs=96.6

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      ++..++|||||+|.||+.+|+.|...|++|.+|||+++..+     +.....++++++++||+|++++|....++.++.+
T Consensus         6 ~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~   85 (306)
T 3l6d_A            6 ESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLGM   85 (306)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTS
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhcc
Confidence            45678999999999999999999999999999999875432     3444678999999999999999977777877753


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615          151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV  192 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV  192 (223)
                      +.+..++++.++||+++....+...+.+.+++..+.  ++|.
T Consensus        86 ~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~--~vda  125 (306)
T 3l6d_A           86 PGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH--YVKG  125 (306)
T ss_dssp             TTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE--EEEE
T ss_pred             cchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEec
Confidence            345667899999999999999999999999887776  5663

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.50  E-value=5.8e-14  Score=120.89  Aligned_cols=116  Identities=12%  Similarity=0.107  Sum_probs=95.9

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhcc
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHII  148 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li  148 (223)
                      .....-++|||||+|.||+.+|+.|...|++|.+|||++....     +.....++++++++||+|++++|....++.++
T Consensus        16 ~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~   95 (310)
T 3doj_A           16 PRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVV   95 (310)
T ss_dssp             --CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred             cccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHH
Confidence            3445568999999999999999999999999999999876543     34446789999999999999999766777665


Q ss_pred             --CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee
Q 035615          149 --NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD  191 (223)
Q Consensus       149 --~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD  191 (223)
                        .++.+..++++.++||+++......+.+.+.+.+..+.  ++|
T Consensus        96 ~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~--~v~  138 (310)
T 3doj_A           96 FDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR--FVE  138 (310)
T ss_dssp             HSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred             hCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEe
Confidence              24566789999999999999999999999999887665  455

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.47  E-value=7.5e-14  Score=119.44  Aligned_cols=109  Identities=17%  Similarity=0.223  Sum_probs=94.1

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      .++|||||+|.||+.+|+.|...|++|.+|||+++..+     +.....+++++++ +|+|++++|..+.++.++ ++.+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~   92 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA   92 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence            46899999999999999999999999999999887643     3445678999999 999999999777777777 6778


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD  191 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD  191 (223)
                      +.++++.++||+++......+.+.+.+.+..+.  ++|
T Consensus        93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~--~~~  128 (296)
T 3qha_A           93 GHAKPGTVIAIHSTISDTTAVELARDLKARDIH--IVD  128 (296)
T ss_dssp             TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCE--EEE
T ss_pred             HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCE--EEe
Confidence            889999999999999999999999999887665  455

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.46  E-value=9.8e-14  Score=117.95  Aligned_cols=110  Identities=15%  Similarity=0.161  Sum_probs=93.7

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhcc--CHHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHII--NKDV  152 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li--~~~~  152 (223)
                      ++|||||+|.||+.+|+.|...|++|.+|||+++..+     +.....+++++++++|+|++++|....++.++  +++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l   81 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV   81 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence            6899999999999999999999999999999876543     34456789999999999999999766777766  2456


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee
Q 035615          153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD  191 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD  191 (223)
                      ++.++++.++||+++....+...+.+.+++..+.  ++|
T Consensus        82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~--~~~  118 (287)
T 3pef_A           82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR--FLE  118 (287)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred             hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE--EEE
Confidence            7789999999999999999999999999887665  455

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.45  E-value=1.2e-13  Score=121.39  Aligned_cols=117  Identities=14%  Similarity=0.215  Sum_probs=97.2

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCC---cEEEEeccCChhhhhcc
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNS---DVLVVCCALTEQTHHII  148 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~a---Div~~~~p~t~~t~~li  148 (223)
                      +++++|||||+|.||+.+|+.|...|++|.+|||++....     +.....+++++++.+   |+|++++|.. .++.++
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl   98 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML   98 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence            5689999999999999999999999999999999875422     344567899999888   9999999976 777776


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCC
Q 035615          149 NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEN  195 (223)
Q Consensus       149 ~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~  195 (223)
                       .+.+..++++.+|||++++...+...+.+.+++..+......|+..
T Consensus        99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg  144 (358)
T 4e21_A           99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGG  144 (358)
T ss_dssp             -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECG
T ss_pred             -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence             5677889999999999999999999999999998887444445443

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.43  E-value=1.8e-13  Score=117.39  Aligned_cols=111  Identities=20%  Similarity=0.189  Sum_probs=92.9

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc-ccChhhhhcCCcEEEEeccCChhhhhccC--H
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY-CANVYDLAVNSDVLVVCCALTEQTHHIIN--K  150 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~-~~~l~el~~~aDiv~~~~p~t~~t~~li~--~  150 (223)
                      .++|||||+|.||+.+|+.|...|++|.+|||+++..+     +... ..+++++++.||+|++++|....++.++.  +
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~   86 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED   86 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence            47899999999999999999999999999999875432     3334 57889999999999999997667777652  4


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee
Q 035615          151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD  191 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD  191 (223)
                      +.++.++++.++||+++......+.+.+.+.+..+.  ++|
T Consensus        87 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~--~~~  125 (303)
T 3g0o_A           87 GVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN--MLD  125 (303)
T ss_dssp             CCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEE
T ss_pred             hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe--EEe
Confidence            566789999999999999998899999999887665  555

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.43  E-value=1.5e-13  Score=116.78  Aligned_cols=111  Identities=14%  Similarity=0.147  Sum_probs=93.1

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhcc--CHHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHII--NKDV  152 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li--~~~~  152 (223)
                      ++|||||+|.||+.+|+.|...|++|.+|||+++..+     +.....++++++++||+|++++|..+.++.++  .++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l   81 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV   81 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence            4799999999999999999999999999999876543     34446789999999999999999766777765  2456


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615          153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV  192 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV  192 (223)
                      ++.++++.++||++++...+.+.+.+.+.+..+.  ++|.
T Consensus        82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~--~~~~  119 (287)
T 3pdu_A           82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR--FLEA  119 (287)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEEC
Confidence            6788999999999999999999999999887665  5553

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.42  E-value=4.6e-13  Score=115.76  Aligned_cols=115  Identities=10%  Similarity=0.023  Sum_probs=92.2

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCC-CEEEEEcCCCCCC------------CCccccc-ChhhhhcCCcEEEEeccCChhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFG-FIISYNSRRKRPS------------VLFPYCA-NVYDLAVNSDVLVVCCALTEQT  144 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~------------~~~~~~~-~l~el~~~aDiv~~~~p~t~~t  144 (223)
                      .++|||||+|.||..+|+.|...| ++|++|||++...            .+.  .. ++++++++||+|++++|.....
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~~  101 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAATK  101 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHHH
Confidence            478999999999999999999999 9999999986211            122  45 7889999999999999976655


Q ss_pred             hhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCC
Q 035615          145 HHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP  197 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP  197 (223)
                      +.+  ++....++++.++||+++......+.+.+.+++..+.....-|+.++|
T Consensus       102 ~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~  152 (317)
T 4ezb_A          102 AVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVP  152 (317)
T ss_dssp             HHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCST
T ss_pred             HHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCch
Confidence            544  677788999999999999999999999999988766532223555433

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.39  E-value=1.6e-12  Score=109.92  Aligned_cols=134  Identities=13%  Similarity=0.140  Sum_probs=98.6

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC-----Ccc--cccChhhhhc-CCcEEEEeccCChhhhhccC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV-----LFP--YCANVYDLAV-NSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-----~~~--~~~~l~el~~-~aDiv~~~~p~t~~t~~li~  149 (223)
                      ++|+|||+|.||+.+++.|+..|+  +|+++|++++...     +..  ...+++++++ ++|+|++++|.. .+..++ 
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~-   79 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIA-   79 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHH-
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHH-
Confidence            589999999999999999999998  9999998764321     222  2457888899 999999999944 455555 


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCC---CC-CCCCCCCceEEccCCCC
Q 035615          150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPN---VP-KEPLRLDNIVLLPCQNA  217 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~---~~-~~l~~~~nv~~TPH~a~  217 (223)
                      .+..+.+++++++++++++.....+.+.+.+.++-+.  ..-++..|..   .. .+++...+++++||.++
T Consensus        80 ~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~--~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~  149 (281)
T 2g5c_A           80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVG--GHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKT  149 (281)
T ss_dssp             HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEEC--EEEECCCSCCSGGGCCSSTTTTCEEEECCCSSS
T ss_pred             HHHHhhCCCCcEEEECCCCcHHHHHHHHHhcccccee--eccccCCccCChhhhhhHHhCCCCEEEecCCCC
Confidence            3466678999999999998876677888888764111  1234444431   11 25777788999999764

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.39  E-value=1.6e-12  Score=112.37  Aligned_cols=137  Identities=15%  Similarity=0.155  Sum_probs=99.2

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC-----Cc--ccccChhh-hhcCCcEEEEeccCChhhh
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV-----LF--PYCANVYD-LAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-----~~--~~~~~l~e-l~~~aDiv~~~~p~t~~t~  145 (223)
                      ++..++|||||+|.||+.+|+.|+..|+  +|++||++++..+     +.  ....++++ ++++||+|++++|.. .+.
T Consensus        30 ~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~-~~~  108 (314)
T 3ggo_A           30 SLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFR  108 (314)
T ss_dssp             CCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGG-GHH
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHH-HHH
Confidence            4456899999999999999999999999  9999999875322     22  22467788 899999999999955 344


Q ss_pred             hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCC---CC-CCCCCCCceEEccCCC
Q 035615          146 HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPN---VP-KEPLRLDNIVLLPCQN  216 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~---~~-~~l~~~~nv~~TPH~a  216 (223)
                      .++ ++....+++++++++++.......+++.+.+.. ++.+ .-=++..|-.   .. ..|+.-..+++||+-+
T Consensus       109 ~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~-~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~  180 (314)
T 3ggo_A          109 EIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVG-GHPIAGTEKSGVEYSLDNLYEGKKVILTPTKK  180 (314)
T ss_dssp             HHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEEC-EEECCCCCCCSGGGCCTTTTTTCEEEECCCTT
T ss_pred             HHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-CEEe-cCcccCCcccchhhhhhhhhcCCEEEEEeCCC
Confidence            555 567777999999999988776556667776654 2221 1224444321   11 2677888899999843

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.38  E-value=1.9e-12  Score=113.53  Aligned_cols=103  Identities=17%  Similarity=0.249  Sum_probs=86.5

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-----CCcccccChhhhhc-CCcEEEEeccCChhhhhccC
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-----VLFPYCANVYDLAV-NSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~-~aDiv~~~~p~t~~t~~li~  149 (223)
                      +|.||||+|+|+|+||+.+|++++.+|++|+++|+++...     .++ ...+.++++. +||+++.|     .+.++|+
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga-~~v~~~ell~~~~DIliP~-----A~~~~I~  245 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGH-TAVALEDVLSTPCDVFAPC-----AMGGVIT  245 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-EECCGGGGGGCCCSEEEEC-----SCSCCBC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCC-EEeChHHhhcCccceecHh-----HHHhhcC
Confidence            6899999999999999999999999999999998765321     122 2346778887 99999743     4788999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      ++.++.|| ..+++|.+|+++.++++ .++|+++++.
T Consensus       246 ~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl  280 (355)
T 1c1d_A          246 TEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL  280 (355)
T ss_dssp             HHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred             HHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence            99999998 68999999999999888 5899988876

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.34  E-value=5.1e-12  Score=108.15  Aligned_cols=136  Identities=17%  Similarity=0.126  Sum_probs=90.5

Q ss_pred             HHHHHHHcCCCCCCCCCCCccccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcE
Q 035615           55 PGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDV  133 (223)
Q Consensus        55 ~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDi  133 (223)
                      ++...+++..|....       ...++|+||| +|.||+.+|+.|+..|++|.+++|++.        .+..+.+++||+
T Consensus         4 ~~~~~~~~~~~~~~~-------~~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~--------~~~~~~~~~aDv   68 (298)
T 2pv7_A            4 ESYANENQFGFKTIN-------SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW--------AVAESILANADV   68 (298)
T ss_dssp             ---------CCCCSC-------TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG--------GGHHHHHTTCSE
T ss_pred             hHHhhhhccCccccC-------CCCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc--------cCHHHHhcCCCE
Confidence            445566677886321       1256899999 999999999999999999999998753        257788999999


Q ss_pred             EEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCC--CCCCCCCCceEE
Q 035615          134 LVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNV--PKEPLRLDNIVL  211 (223)
Q Consensus       134 v~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~--~~~l~~~~nv~~  211 (223)
                      |++++|.. .+..++ ++....++++++++++++......+.+.+.+   ...     +....|..  ..+++.-..+++
T Consensus        69 Vilavp~~-~~~~vl-~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~---~~~-----~v~~hP~~g~~~~~~~g~~~~l  138 (298)
T 2pv7_A           69 VIVSVPIN-LTLETI-ERLKPYLTENMLLADLTSVKREPLAKMLEVH---TGA-----VLGLHPMFGADIASMAKQVVVR  138 (298)
T ss_dssp             EEECSCGG-GHHHHH-HHHGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSE-----EEEEEECSCTTCSCCTTCEEEE
T ss_pred             EEEeCCHH-HHHHHH-HHHHhhcCCCcEEEECCCCCcHHHHHHHHhc---CCC-----EEeeCCCCCCCchhhcCCeEEE
Confidence            99999954 466666 3456678999999999887654444454442   122     22223321  124666668999


Q ss_pred             ccCC
Q 035615          212 LPCQ  215 (223)
Q Consensus       212 TPH~  215 (223)
                      |||-
T Consensus       139 ~~~~  142 (298)
T 2pv7_A          139 CDGR  142 (298)
T ss_dssp             EEEE
T ss_pred             ecCC
Confidence            9974

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.33  E-value=8.6e-13  Score=120.16  Aligned_cols=115  Identities=15%  Similarity=0.220  Sum_probs=94.9

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------C--cccccChhhhhc---CCcEEEEeccCChhhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV--------L--FPYCANVYDLAV---NSDVLVVCCALTEQTH  145 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------~--~~~~~~l~el~~---~aDiv~~~~p~t~~t~  145 (223)
                      .++|||||+|.||+.+|+.|...|++|.+|||+++..+        +  .....+++|+++   .+|+|++++|..+.++
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   83 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD   83 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence            46899999999999999999999999999999875422        1  112468888876   5999999999887888


Q ss_pred             hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615          146 HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE  194 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~  194 (223)
                      .++ ++....|++|.++||++++...+...+.+.+.+..+.....-|+.
T Consensus        84 ~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsG  131 (484)
T 4gwg_A           84 DFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSG  131 (484)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             HHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccC
Confidence            877 577888999999999999999999999999998888744333443

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.30  E-value=6.1e-12  Score=106.85  Aligned_cols=126  Identities=9%  Similarity=0.104  Sum_probs=95.1

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCC------------------------------cccccChhhhhc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVL------------------------------FPYCANVYDLAV  129 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~------------------------------~~~~~~l~el~~  129 (223)
                      ++|+|||.|.||+.+|+.+...|++|++||++++..+.                              .....++++.++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            68999999999999999999999999999998653210                              122467788899


Q ss_pred             CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCce
Q 035615          130 NSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNI  209 (223)
Q Consensus       130 ~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv  209 (223)
                      +||+|+.++|.+.+....+-++..+.+++++++++.+.+  +....+.+++... ....++..|.       |.+..+.+
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~-~~~ig~h~~~-------p~~~~~lv  154 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRG-DKFLALHFAN-------HVWVNNTA  154 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCG-GGEEEEEECS-------STTTSCEE
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCC-cceEEEccCC-------CcccCceE
Confidence            999999999988766666656777889999999965444  3566777777543 2345666553       34566778


Q ss_pred             EEccCC
Q 035615          210 VLLPCQ  215 (223)
Q Consensus       210 ~~TPH~  215 (223)
                      .++||-
T Consensus       155 evv~~~  160 (283)
T 4e12_A          155 EVMGTT  160 (283)
T ss_dssp             EEEECT
T ss_pred             EEEeCC
Confidence            888873

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.29  E-value=3.3e-12  Score=108.38  Aligned_cols=136  Identities=15%  Similarity=0.120  Sum_probs=96.5

Q ss_pred             CCEEEEEecChHHHHHHHHHHhC--CCEEEEEcCCCCCCC-----Cc--ccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAF--GFIISYNSRRKRPSV-----LF--PYCANVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~~~~~-----~~--~~~~~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      -++|||||+|.||+.+++.|...  |++|+++|+++....     +.  ....+++++++++|+|++++|.. ....++ 
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~-   83 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIK-KTIDFI-   83 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHH-HHHHHH-
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHH-HHHHHH-
Confidence            46899999999999999999876  689999998764321     22  13457788889999999999944 335555 


Q ss_pred             HHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee---CCCC---CCCCC-CCCCCCCceEEccCCCCC
Q 035615          150 KDVMAE-LGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD---VFEN---DPNVP-KEPLRLDNIVLLPCQNAL  218 (223)
Q Consensus       150 ~~~l~~-mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD---V~~~---EP~~~-~~l~~~~nv~~TPH~a~~  218 (223)
                      ++.... ++++.+++++++......+.+.+.+.+..+.  .++   ++..   .|... .+++.-.+++++||.++.
T Consensus        84 ~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~--~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~  158 (290)
T 3b1f_A           84 KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQ--FVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTK  158 (290)
T ss_dssp             HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCE--EEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCC
T ss_pred             HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCE--EEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCC
Confidence            345566 8999999999988876667888877753333  333   2322   22222 267777789999997643

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.28  E-value=4.8e-12  Score=115.26  Aligned_cols=109  Identities=17%  Similarity=0.253  Sum_probs=90.9

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------CcccccChhhhhcC---CcEEEEeccCChhh
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------LFPYCANVYDLAVN---SDVLVVCCALTEQT  144 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~~~l~el~~~---aDiv~~~~p~t~~t  144 (223)
                      .+.++|||||+|.||+.+|+.|...|++|.+|+|+++..+         +.....+++++++.   +|+|++++|..+.+
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   92 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGT   92 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHH
Confidence            5678899999999999999999999999999999865321         23345688888877   99999999987778


Q ss_pred             hhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          145 HHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      +.++ ++....++++.++||++.|...+...+.+.+.+..+.
T Consensus        93 ~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~  133 (480)
T 2zyd_A           93 DAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN  133 (480)
T ss_dssp             HHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence            8887 4677789999999999999988888899999876655

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.27  E-value=5.5e-12  Score=107.28  Aligned_cols=107  Identities=16%  Similarity=0.272  Sum_probs=87.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccC--HHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN--KDV  152 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~--~~~  152 (223)
                      ++|+|||+|.||+.+++.|...|++|.+|+|+++..+     +.....+++++++++|+|++++|....++.++.  ++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l   85 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   85 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence            5899999999999999999999999999998865322     334456888999999999999997666676662  345


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      .+.++++.++|++++|...+.+.|.+.+.+..+.
T Consensus        86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  119 (299)
T 1vpd_A           86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE  119 (299)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            6778999999999999887788899999876554

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.26  E-value=9.3e-12  Score=105.55  Aligned_cols=106  Identities=15%  Similarity=0.169  Sum_probs=85.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCH--HH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK--DV  152 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~--~~  152 (223)
                      ++|+|||+|.||+.+++.|...|++|.+|+ +++...     +.....+++++++++|+|++++|....++.++..  +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   82 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC   82 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence            589999999999999999999999999998 665432     3334568889999999999999966656666532  45


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      .+.++++.++|+++++...+.+.+.+.+.+..+.
T Consensus        83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  116 (295)
T 1yb4_A           83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEMGAD  116 (295)
T ss_dssp             TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            5678999999999999888888899998875443

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.25  E-value=7.5e-12  Score=106.52  Aligned_cols=108  Identities=16%  Similarity=0.242  Sum_probs=88.1

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccC--HH
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN--KD  151 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~--~~  151 (223)
                      .++|+|||+|.||+.+++.|...|++|.+|+|+++...     +.....+++++++++|+|++++|....++.++.  ++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~   83 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGG   83 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcch
Confidence            36899999999999999999999999999998764321     334456888999999999999997766777763  35


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      ..+.++++.++|++++|...+.+.+.+.+.+..+.
T Consensus        84 l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~  118 (301)
T 3cky_A           84 VLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGID  118 (301)
T ss_dssp             HHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCE
T ss_pred             HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            66778999999999999877788898888875444

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.24  E-value=1.2e-11  Score=109.19  Aligned_cols=96  Identities=9%  Similarity=0.144  Sum_probs=78.2

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccc-------------------------cccChh
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFP-------------------------YCANVY  125 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~-------------------------~~~~l~  125 (223)
                      .+.+++|+|||+|.||..+++.++++|++|+++|+++...+     +..                         ...+++
T Consensus       181 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          181 TVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             EECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            57899999999999999999999999999999999875421     111                         023577


Q ss_pred             hhhcCCcEEEEec--cCChhhhhccCHHHHhcCCCCcEEEEcC--CCcccC
Q 035615          126 DLAVNSDVLVVCC--ALTEQTHHIINKDVMAELGKGGMIINVG--RGALID  172 (223)
Q Consensus       126 el~~~aDiv~~~~--p~t~~t~~li~~~~l~~mk~ga~lIN~a--rg~~vd  172 (223)
                      +.++++|+|+.++  |.. .+..+++++.++.||+|++|||++  +|+.+.
T Consensus       261 e~l~~aDIVI~tv~iPg~-~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e  310 (381)
T 3p2y_A          261 DAITKFDIVITTALVPGR-PAPRLVTAAAATGMQPGSVVVDLAGETGGNCE  310 (381)
T ss_dssp             HHHTTCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSBT
T ss_pred             HHHhcCCEEEECCCCCCc-ccceeecHHHHhcCCCCcEEEEEeCCCCCccc
Confidence            8999999999875  532 356789999999999999999998  676654

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.24  E-value=5e-12  Score=105.24  Aligned_cols=92  Identities=14%  Similarity=0.300  Sum_probs=67.0

Q ss_pred             CccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC--------------C------CCcccccChhhhhcCCc
Q 035615           73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP--------------S------VLFPYCANVYDLAVNSD  132 (223)
Q Consensus        73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~--------------~------~~~~~~~~l~el~~~aD  132 (223)
                      ...++.+++|||||+|.||+.+|+.|...|++|++|+|+++.              .      .+.....++.+++++||
T Consensus        13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD   92 (245)
T 3dtt_A           13 ENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAE   92 (245)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCS
T ss_pred             cccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCC
Confidence            356799999999999999999999999999999999998764              1      02233567889999999


Q ss_pred             EEEEeccCChhhhhccCHHH-HhcCCCCcEEEEcCC
Q 035615          133 VLVVCCALTEQTHHIINKDV-MAELGKGGMIINVGR  167 (223)
Q Consensus       133 iv~~~~p~t~~t~~li~~~~-l~~mk~ga~lIN~ar  167 (223)
                      +|++++|...... .+. +. ...+ ++.++|+++-
T Consensus        93 vVilavp~~~~~~-~~~-~i~~~~l-~g~ivi~~s~  125 (245)
T 3dtt_A           93 LVVNATEGASSIA-ALT-AAGAENL-AGKILVDIAN  125 (245)
T ss_dssp             EEEECSCGGGHHH-HHH-HHCHHHH-TTSEEEECCC
T ss_pred             EEEEccCcHHHHH-HHH-Hhhhhhc-CCCEEEECCC
Confidence            9999999654333 332 22 2334 7899999993

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.23  E-value=1.8e-11  Score=108.81  Aligned_cols=97  Identities=12%  Similarity=0.300  Sum_probs=79.0

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc-----------------------------c
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY-----------------------------C  121 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~-----------------------------~  121 (223)
                      .+.+.+|+|+|+|.||..+++.++++|++|+++|+++...+     +...                             .
T Consensus       187 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          187 TVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhH
Confidence            47899999999999999999999999999999999875421     1110                             1


Q ss_pred             cChhhhhcCCcEEEEec--cCChhhhhccCHHHHhcCCCCcEEEEcC--CCcccCH
Q 035615          122 ANVYDLAVNSDVLVVCC--ALTEQTHHIINKDVMAELGKGGMIINVG--RGALIDE  173 (223)
Q Consensus       122 ~~l~el~~~aDiv~~~~--p~t~~t~~li~~~~l~~mk~ga~lIN~a--rg~~vd~  173 (223)
                      .++++.++++|+|+.++  |.. ....+++++.++.||+|+++||++  +|+.++.
T Consensus       267 ~~l~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~  321 (405)
T 4dio_A          267 ALVAEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGGNIEG  321 (405)
T ss_dssp             HHHHHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTT
T ss_pred             hHHHHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCCCccc
Confidence            25788899999999875  532 356789999999999999999999  7777644

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.22  E-value=2.8e-11  Score=110.63  Aligned_cols=107  Identities=16%  Similarity=0.263  Sum_probs=90.2

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------CcccccChhhhhcC---CcEEEEeccCChhhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------LFPYCANVYDLAVN---SDVLVVCCALTEQTH  145 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~el~~~---aDiv~~~~p~t~~t~  145 (223)
                      ..+|||||+|.||+.+|+.|...|++|.+|||+++..+          +.....+++++++.   +|+|++++|..+.++
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   89 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD   89 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH
Confidence            46799999999999999999999999999999875421          23345688888876   999999999877888


Q ss_pred             hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          146 HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      .++ ++....+++|.++|+++.+...+...+.+.+.+..+.
T Consensus        90 ~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~  129 (497)
T 2p4q_A           90 ALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGIL  129 (497)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCc
Confidence            877 5677889999999999999988888899989876555

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.21  E-value=1.2e-11  Score=104.91  Aligned_cols=104  Identities=16%  Similarity=0.217  Sum_probs=83.1

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCH--HH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK--DV  152 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~--~~  152 (223)
                      ++|+|||+|.||+.+++.|...|++|.+|+|+++...     +.....+++++++++|+|++++|....++.++..  ..
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            4799999999999999999999999999999875422     3334568889999999999999977677766532  24


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          153 MAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      ++.++++.++|+++.....+...+.+.+.+.
T Consensus        81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~  111 (296)
T 2gf2_A           81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEKM  111 (296)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred             HhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            5678999999998888777777777777654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.21  E-value=1.5e-11  Score=103.79  Aligned_cols=108  Identities=15%  Similarity=0.226  Sum_probs=85.7

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA  154 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~  154 (223)
                      ++|+|||+|.||+.+++.|.. |++|.+|+|+++...     +..... ++++++++|+|++++|....++.++ ++..+
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~   78 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA-EALYP   78 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH-HHHTT
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH-HHHHh
Confidence            479999999999999999999 999999999875432     122233 7788889999999999665566665 45667


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615          155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV  192 (223)
Q Consensus       155 ~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV  192 (223)
                      .++++.++|+++.+...+.+.+.+.+.+..+.  .+|.
T Consensus        79 ~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~--~~~~  114 (289)
T 2cvz_A           79 YLREGTYWVDATSGEPEASRRLAERLREKGVT--YLDA  114 (289)
T ss_dssp             TCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE--EEEC
T ss_pred             hCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEEe
Confidence            78999999999999888888999999875443  4453

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.20  E-value=2.2e-11  Score=104.53  Aligned_cols=107  Identities=14%  Similarity=0.232  Sum_probs=86.1

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCH--HH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK--DV  152 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~--~~  152 (223)
                      ++|+|||+|.||+.+|+.|...|++|.+++|+++...     +.....+++++++++|+|++++|....++.++..  ..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~  110 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV  110 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence            6899999999999999999999999999999876532     2333467888899999999999966666665532  24


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      ++.++++.++|+++++.....+.+.+.+......
T Consensus       111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~  144 (316)
T 2uyy_A          111 LQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGR  144 (316)
T ss_dssp             GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            5678999999999998877788888888765554

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.17  E-value=1e-11  Score=104.34  Aligned_cols=103  Identities=13%  Similarity=0.114  Sum_probs=78.8

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCCh--hhhhc
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTE--QTHHI  147 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~--~t~~l  147 (223)
                      +++| +++|||.|.||+.+++.|...|++|.+++|+.++..      +.. ..+++++ +++|+|++++|...  .+...
T Consensus       114 ~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~  190 (263)
T 2d5c_A          114 PLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGLEDPSASP  190 (263)
T ss_dssp             CCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTTTCTTCCS
T ss_pred             CCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCCCCCCCCC
Confidence            5789 999999999999999999999999999999864322      111 4567888 99999999999662  23244


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          148 INKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       148 i~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      +.   .+.++++.++++++.+.. +. .|.+++++..+.
T Consensus       191 l~---~~~l~~g~~viD~~~~p~-~t-~l~~~a~~~g~~  224 (263)
T 2d5c_A          191 LP---AELFPEEGAAVDLVYRPL-WT-RFLREAKAKGLK  224 (263)
T ss_dssp             SC---GGGSCSSSEEEESCCSSS-SC-HHHHHHHHTTCE
T ss_pred             CC---HHHcCCCCEEEEeecCCc-cc-HHHHHHHHCcCE
Confidence            43   456899999999998744 33 477777776554

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.16  E-value=1.6e-11  Score=107.33  Aligned_cols=130  Identities=12%  Similarity=0.058  Sum_probs=89.4

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhc----CCcEEEEeccCChhhhhccC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAV----NSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~----~aDiv~~~~p~t~~t~~li~  149 (223)
                      -++|||||+|.||+++|+.|+..|++|++||+++....     +.....+++++++    .+|+|++++|. ..+..++ 
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl-   85 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLL-   85 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHH-
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHH-
Confidence            35799999999999999999999999999999875432     3333567777765    47999999994 4566666 


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee---CCCCCCC-C---CCCCCCCCceEEccCC
Q 035615          150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD---VFENDPN-V---PKEPLRLDNIVLLPCQ  215 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD---V~~~EP~-~---~~~l~~~~nv~~TPH~  215 (223)
                      ++ +..++++++++|++..+..-.+++.+.+.  ...  +++   ++..|-. +   ...|+.-.++++||+-
T Consensus        86 ~~-l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~--~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~  153 (341)
T 3ktd_A           86 DA-VHTHAPNNGFTDVVSVKTAVYDAVKARNM--QHR--YVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQ  153 (341)
T ss_dssp             HH-HHHHCTTCCEEECCSCSHHHHHHHHHTTC--GGG--EECEEECCSCC-CCGGGCCSSTTTTCEEEECCGG
T ss_pred             HH-HHccCCCCEEEEcCCCChHHHHHHHHhCC--CCc--EecCCccccccccchhhhhhHHhcCCeEEEEeCC
Confidence            33 34458999999998766533334444332  122  333   3444311 1   1257877789999974

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.16  E-value=3.1e-11  Score=109.78  Aligned_cols=107  Identities=15%  Similarity=0.250  Sum_probs=88.5

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------CcccccChhhhhcC---CcEEEEeccCChhhhhc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------LFPYCANVYDLAVN---SDVLVVCCALTEQTHHI  147 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~~~l~el~~~---aDiv~~~~p~t~~t~~l  147 (223)
                      ++|||||+|.||+.+|+.|...|++|.+|+|+++..+         +.....+++++++.   +|+|++++|....++.+
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            5799999999999999999999999999999864321         23345688888876   99999999987777777


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceE
Q 035615          148 INKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDING  187 (223)
Q Consensus       148 i~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~  187 (223)
                      + ++....+++|.++|+++.+...+...+.+.+.+..+..
T Consensus        86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~  124 (474)
T 2iz1_A           86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINF  124 (474)
T ss_dssp             H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEE
T ss_pred             H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeE
Confidence            7 45667889999999999998888888888887765553

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.16  E-value=5.8e-11  Score=108.14  Aligned_cols=108  Identities=14%  Similarity=0.229  Sum_probs=88.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----------CCcccccChhhhhc---CCcEEEEeccCChhhhh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----------VLFPYCANVYDLAV---NSDVLVVCCALTEQTHH  146 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~el~~---~aDiv~~~~p~t~~t~~  146 (223)
                      ++|||||+|.||+.+|+.|...|++|.+|+|+++..          .+.....+++++++   .+|+|++++|....++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            579999999999999999999999999999986532          12334567888874   89999999997777787


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEE
Q 035615          147 IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGV  188 (223)
Q Consensus       147 li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a  188 (223)
                      ++ ++....++++.+||+++.+...+...+.+.+.+..+...
T Consensus        83 vl-~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v  123 (482)
T 2pgd_A           83 FI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFV  123 (482)
T ss_dssp             HH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEe
Confidence            77 456778999999999999988888888888887655533

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.14  E-value=6.3e-11  Score=107.43  Aligned_cols=91  Identities=15%  Similarity=0.203  Sum_probs=76.7

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----CcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      .++.||+++|+|+|.||+.+|++|+++|++|+++++++....    ......+++++++.+|+++.+.    .+.++++.
T Consensus       261 ~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~at----G~~~vl~~  336 (488)
T 3ond_A          261 VMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTT----GNKDIIML  336 (488)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEECS----SCSCSBCH
T ss_pred             CcccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeCC----CChhhhhH
Confidence            458999999999999999999999999999999998764321    1123567889999999998754    35778999


Q ss_pred             HHHhcCCCCcEEEEcCCCc
Q 035615          151 DVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~  169 (223)
                      +.++.||++++++|++++.
T Consensus       337 e~l~~mk~gaiVvNaG~~~  355 (488)
T 3ond_A          337 DHMKKMKNNAIVCNIGHFD  355 (488)
T ss_dssp             HHHTTSCTTEEEEESSSTT
T ss_pred             HHHHhcCCCeEEEEcCCCC
Confidence            9999999999999999983

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.14  E-value=4.1e-11  Score=109.04  Aligned_cols=107  Identities=19%  Similarity=0.279  Sum_probs=87.6

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------C-------cccccChhhhhc---CCcEEEEeccCChh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------L-------FPYCANVYDLAV---NSDVLVVCCALTEQ  143 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~-------~~~~~~l~el~~---~aDiv~~~~p~t~~  143 (223)
                      ++|||||+|.||+.+|+.|...|++|.+|+|+++..+      +       .....+++++++   .+|+|++++|....
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            4799999999999999999999999999999764321      2       233567888876   49999999998777


Q ss_pred             hhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceE
Q 035615          144 THHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDING  187 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~  187 (223)
                      ++.++ ++....++++.++|+++.|...+...+.+.+.+..+..
T Consensus        82 v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~  124 (478)
T 1pgj_A           82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRF  124 (478)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEE
T ss_pred             HHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeE
Confidence            77777 46677889999999999998888888889898766653

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.11  E-value=7.8e-11  Score=102.64  Aligned_cols=131  Identities=18%  Similarity=0.200  Sum_probs=90.7

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC------CCcccccChhhhhcCCcEEEEeccCChhhhhcc
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS------VLFPYCANVYDLAVNSDVLVVCCALTEQTHHII  148 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li  148 (223)
                      ..+.+++|+|||+|.||+++|+.|+..|++|+++++++...      .+... .++++++++||+|++++|.. ....++
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~-~~~~e~~~~aDvVilavp~~-~~~~v~   89 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKV-ADVKTAVAAADVVMILTPDE-FQGRLY   89 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEE-ECHHHHHHTCSEEEECSCHH-HHHHHH
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEE-ccHHHHHhcCCEEEEeCCcH-HHHHHH
Confidence            45889999999999999999999999999999999886541      13322 37889999999999999954 335555


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC----CCCC---CCceEEccCCC
Q 035615          149 NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK----EPLR---LDNIVLLPCQN  216 (223)
Q Consensus       149 ~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~----~l~~---~~nv~~TPH~a  216 (223)
                      .++....+++++++++++ |  +..  ..+.+.    ....+||+...|..+.    .++.   -.++++|||..
T Consensus        90 ~~~i~~~l~~~~ivi~~~-g--v~~--~~~~~~----~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~  155 (338)
T 1np3_A           90 KEEIEPNLKKGATLAFAH-G--FSI--HYNQVV----PRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQD  155 (338)
T ss_dssp             HHHTGGGCCTTCEEEESC-C--HHH--HTTSSC----CCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEEC
T ss_pred             HHHHHhhCCCCCEEEEcC-C--chh--HHHhhc----CCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCC
Confidence            435667799999999874 2  222  222111    1223455555564332    2333   45788899954

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.10  E-value=3.4e-10  Score=95.29  Aligned_cols=131  Identities=16%  Similarity=0.243  Sum_probs=90.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cc--ccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LF--PYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~--~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      ++|+|||+|.||+.+++.|...|++|.+++|+++...     +.  ....+++++ +++|+|++++|. ..+..++ ++.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~-~~~~~~~-~~l   77 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPI-QLILPTL-EKL   77 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCH-HHHHHHH-HHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCH-HHHHHHH-HHH
Confidence            4799999999999999999999999999998764321     22  124577888 999999999993 3455555 355


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCC---CCCCC-CCCCCCceEEccCCC
Q 035615          153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEND---PNVPK-EPLRLDNIVLLPCQN  216 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~E---P~~~~-~l~~~~nv~~TPH~a  216 (223)
                      ...+++++++|+++.......+.+.+.+.  ++.+ ..-++..+   |.... .++.-..++++|+-+
T Consensus        78 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~-~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~  142 (279)
T 2f1k_A           78 IPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIG-GHPMAGTAAQGIDGAEENLFVNAPYVLTPTEY  142 (279)
T ss_dssp             GGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEE-EEECCCCSCSSGGGCCTTTTTTCEEEEEECTT
T ss_pred             HhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEee-cCcccCCccCCHHHHhHHHhCCCcEEEecCCC
Confidence            66789999999998876665566555443  3321 22333222   21111 456666788888754

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.09  E-value=2.9e-10  Score=92.38  Aligned_cols=80  Identities=13%  Similarity=0.339  Sum_probs=63.7

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA  154 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~  154 (223)
                      .++..++|+|||+|.||+.+|+.|...|++|.+++|+++             .++++|+|++++| .+.++.++. +..+
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-------------~~~~aD~vi~av~-~~~~~~v~~-~l~~   79 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-------------ATTLGEIVIMAVP-YPALAALAK-QYAT   79 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-------------CSSCCSEEEECSC-HHHHHHHHH-HTHH
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-------------HhccCCEEEEcCC-cHHHHHHHH-HHHH
Confidence            458899999999999999999999999999999998754             5678999999999 666666653 3445


Q ss_pred             cCCCCcEEEEcCCCcc
Q 035615          155 ELGKGGMIINVGRGAL  170 (223)
Q Consensus       155 ~mk~ga~lIN~arg~~  170 (223)
                      .++ ++++|++++|--
T Consensus        80 ~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           80 QLK-GKIVVDITNPLN   94 (209)
T ss_dssp             HHT-TSEEEECCCCBC
T ss_pred             hcC-CCEEEEECCCCC
Confidence            677 999999999765

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.09  E-value=6.1e-11  Score=107.18  Aligned_cols=93  Identities=14%  Similarity=0.303  Sum_probs=71.9

Q ss_pred             ccccCC-CEEEEEecChHHHHHHHHHHhC------CCEEEEEcCCCCCC------CCccc----ccChhhhhcCCcEEEE
Q 035615           74 GFKLGG-MQVGIVRLGNIGSEVLNRLQAF------GFIISYNSRRKRPS------VLFPY----CANVYDLAVNSDVLVV  136 (223)
Q Consensus        74 ~~~l~g-~~vgIiG~G~iG~~~a~~l~~~------G~~V~~~~~~~~~~------~~~~~----~~~l~el~~~aDiv~~  136 (223)
                      ...|+| +||||||+|+||+++|+.|+..      |++|++..+.....      .++..    ..++.|++++||+|++
T Consensus        48 ~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVIL  127 (525)
T 3fr7_A           48 PEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLL  127 (525)
T ss_dssp             HHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEE
T ss_pred             hHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEE
Confidence            456899 9999999999999999999988      99987555443221      23332    2578999999999999


Q ss_pred             eccCChhhhhccCHHHHhcCCCCcEEEEcCCCc
Q 035615          137 CCALTEQTHHIINKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       137 ~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~  169 (223)
                      ++|..... .++. +.+..||+|++ |-++-|-
T Consensus       128 aVP~~~~~-eVl~-eI~p~LK~GaI-Ls~AaGf  157 (525)
T 3fr7_A          128 LISDAAQA-DNYE-KIFSHMKPNSI-LGLSHGF  157 (525)
T ss_dssp             CSCHHHHH-HHHH-HHHHHSCTTCE-EEESSSH
T ss_pred             CCChHHHH-HHHH-HHHHhcCCCCe-EEEeCCC
Confidence            99976553 4564 68899999998 5666663

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.68  E-value=9.5e-12  Score=100.87  Aligned_cols=90  Identities=20%  Similarity=0.253  Sum_probs=71.9

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.+++|+|||+|+||+.+++.|...|++|.+++|++....    +.. ..+++++++++|+|++++|.. .++.++  + 
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~-~~~~~~~~~~aDvVilav~~~-~~~~v~--~-   91 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAE-VLCYSEAASRSDVIVLAVHRE-HYDFLA--E-   91 (201)
Confidence            6788999999999999999999999999999998865211    122 236778899999999999964 566665  2 


Q ss_pred             HhcCCCCcEEEEcCCCccc
Q 035615          153 MAELGKGGMIINVGRGALI  171 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~v  171 (223)
                      +..+++++++||+++|-..
T Consensus        92 l~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           92 LADSLKGRVLIDVSNNQKM  110 (201)
Confidence            4456789999999999853

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.09  E-value=9.4e-11  Score=97.96  Aligned_cols=98  Identities=8%  Similarity=0.123  Sum_probs=76.8

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCC--CCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRR--KRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~--~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      ++|||||+|.||+.+|+.|...|++|+++++.  ++..+     +..  .+++++++++|+|++++|.....+.+  .+.
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~   76 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA--RRA   76 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH--HHH
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH--HHH
Confidence            47999999999999999999999999998873  21111     222  57788899999999999966555554  456


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          153 MAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      .+.+++  ++|+++.+...+.+.+.+.+.+.
T Consensus        77 ~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~  105 (264)
T 1i36_A           77 GRHVRG--IYVDINNISPETVRMASSLIEKG  105 (264)
T ss_dssp             HTTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred             HHhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence            667776  99999988877778888888664

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.06  E-value=8e-11  Score=106.79  Aligned_cols=130  Identities=6%  Similarity=0.101  Sum_probs=92.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhC--CCEEEEEcCCCCCCC------------------------CcccccChhhhhcCCcE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF--GFIISYNSRRKRPSV------------------------LFPYCANVYDLAVNSDV  133 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~~~~~------------------------~~~~~~~l~el~~~aDi  133 (223)
                      ++|+|||+|.||..+|..|...  |++|++||++++..+                        ......++++.+++||+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv   85 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL   85 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence            5899999999999999999887  899999998754211                        11223567788899999


Q ss_pred             EEEeccCChhhhhc-----------c--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee---CCCCCC
Q 035615          134 LVVCCALTEQTHHI-----------I--NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD---VFENDP  197 (223)
Q Consensus       134 v~~~~p~t~~t~~l-----------i--~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD---V~~~EP  197 (223)
                      |++|+|.....++.           .  .++..+.+++++++|+.|+..+-..+.+.+.+++....  .+|   ++.+|+
T Consensus        86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~--~~d~~V~~~Pe~  163 (467)
T 2q3e_A           86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKP--NLNLQVLSNPEF  163 (467)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCT--TCEEEEEECCCC
T ss_pred             EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCC--CCCeEEEeCHHH
Confidence            99999854332221           1  13455678999999999998888888888888876422  233   356666


Q ss_pred             CCCC----CCCCCCceEE
Q 035615          198 NVPK----EPLRLDNIVL  211 (223)
Q Consensus       198 ~~~~----~l~~~~nv~~  211 (223)
                      ..+.    .+...+++++
T Consensus       164 ~~~G~~~~d~~~~~rivv  181 (467)
T 2q3e_A          164 LAEGTAIKDLKNPDRVLI  181 (467)
T ss_dssp             CCTTSHHHHHHSCSCEEE
T ss_pred             hhcccchhhccCCCEEEE
Confidence            5443    2456667764

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.06  E-value=1.2e-10  Score=97.54  Aligned_cols=97  Identities=9%  Similarity=0.218  Sum_probs=75.9

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhc
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHI  147 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~l  147 (223)
                      .++.+++|||||+|.||+.+++.+...|++ |.+++|+++...      +.....+++++++++|+|++++|.. ....+
T Consensus         6 ~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~v   84 (266)
T 3d1l_A            6 RSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAEL   84 (266)
T ss_dssp             -CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHHH
T ss_pred             cCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHHH
Confidence            346678999999999999999999988998 889998765422      3334567888899999999999954 34555


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCcccCH
Q 035615          148 INKDVMAELGKGGMIINVGRGALIDE  173 (223)
Q Consensus       148 i~~~~l~~mk~ga~lIN~arg~~vd~  173 (223)
                      + ++..+.+++++++|+++.|...+.
T Consensus        85 ~-~~l~~~~~~~~ivv~~s~~~~~~~  109 (266)
T 3d1l_A           85 L-QGIVEGKREEALMVHTAGSIPMNV  109 (266)
T ss_dssp             H-HHHHTTCCTTCEEEECCTTSCGGG
T ss_pred             H-HHHHhhcCCCcEEEECCCCCchHH
Confidence            4 345567889999999999877543

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=99.04  E-value=2.4e-10  Score=100.55  Aligned_cols=103  Identities=17%  Similarity=0.238  Sum_probs=81.6

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------CcccccChhhhhc-CCcEEEEeccCChhhhhcc
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFPYCANVYDLAV-NSDVLVVCCALTEQTHHII  148 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~el~~-~aDiv~~~~p~t~~t~~li  148 (223)
                      +|.|++|+|+|+|+||+.+|++|..+|++|+++|+++....      +. ...+.++++. +||+++.|.     +.++|
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga-~~v~~~~ll~~~~DIvip~a-----~~~~I  243 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGA-DAVAPNAIYGVTCDIFAPCA-----LGAVL  243 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCC-EECCGGGTTTCCCSEEEECS-----CSCCB
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCC-EEEChHHHhccCCcEeeccc-----hHHHh
Confidence            58999999999999999999999999999999998764322      22 2345667666 899998774     56788


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          149 NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       149 ~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      +.+.++.|+ ..++++.+++++.+++ ..+.|+++.+.
T Consensus       244 ~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi~  279 (364)
T 1leh_A          244 NDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGIV  279 (364)
T ss_dssp             STTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTCE
T ss_pred             CHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCCE
Confidence            888888885 5789999999998866 55667776663

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.03  E-value=3.6e-10  Score=95.60  Aligned_cols=105  Identities=12%  Similarity=0.133  Sum_probs=77.2

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChh--hhh
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQ--THH  146 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~--t~~  146 (223)
                      .++.+++++|||.|.||+++++.|...|++|.+++|++++..      +.....+++++++++|+|++++|....  +..
T Consensus       125 ~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~  204 (275)
T 2hk9_A          125 PEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPE  204 (275)
T ss_dssp             TTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCC
T ss_pred             CCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCC
Confidence            357899999999999999999999999999999999864321      222233788889999999999996532  223


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          147 IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       147 li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      .++   ++.++++.++++++.   . ...+.+..++..+.
T Consensus       205 ~i~---~~~l~~g~~viDv~~---~-~t~ll~~a~~~g~~  237 (275)
T 2hk9_A          205 IFN---YDLIKKDHVVVDIIY---K-ETKLLKKAKEKGAK  237 (275)
T ss_dssp             SSC---GGGCCTTSEEEESSS---S-CCHHHHHHHHTTCE
T ss_pred             CCC---HHHcCCCCEEEEcCC---C-hHHHHHHHHHCcCE
Confidence            443   356899999999998   2 33355555544443

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.97  E-value=6.5e-10  Score=95.10  Aligned_cols=110  Identities=9%  Similarity=0.112  Sum_probs=78.2

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------------CcccccChhhhhcCCcEEEEeccCChhh
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------------LFPYCANVYDLAVNSDVLVVCCALTEQT  144 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------------~~~~~~~l~el~~~aDiv~~~~p~t~~t  144 (223)
                      -.-|+|||||+|.||..+|+.+. .|++|++||++++..+            ......++++ +++||+|+.++|...+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v   87 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT   87 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence            34789999999999999999999 9999999999875432            1222456766 88999999999988876


Q ss_pred             hhccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615          145 HHIINKDVMAELGKGGMII-NVGRGALIDEKEMLQFLVQGDINGVGLDVFE  194 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lI-N~arg~~vd~~al~~aL~~~~i~~a~lDV~~  194 (223)
                      +..+-.+ +..+ ++++++ |+|.-++   ..+.+.++ ...+..++.-|.
T Consensus        88 k~~l~~~-l~~~-~~~IlasntSti~~---~~~a~~~~-~~~r~~G~Hf~~  132 (293)
T 1zej_A           88 KVEVLRE-VERL-TNAPLCSNTSVISV---DDIAERLD-SPSRFLGVHWMN  132 (293)
T ss_dssp             HHHHHHH-HHTT-CCSCEEECCSSSCH---HHHHTTSS-CGGGEEEEEECS
T ss_pred             HHHHHHH-HhcC-CCCEEEEECCCcCH---HHHHHHhh-cccceEeEEecC
Confidence            6655343 5666 899885 7877443   44544443 222345566555

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.97  E-value=1.3e-09  Score=98.49  Aligned_cols=152  Identities=14%  Similarity=0.114  Sum_probs=99.8

Q ss_pred             CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCC---CCCccccCCCEEEEEecChHHHHHHHHHHhCCCEEE
Q 035615           30 AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGD---YPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIIS  106 (223)
Q Consensus        30 ~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~---~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~  106 (223)
                      ..|.|-..|.|-+..++|...|.         .++|.....   +.....-.=++|+|||.|.||..+|..+...|++|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~a~~~---------~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~   81 (460)
T 3k6j_A           11 STGENLYFQGSEVRSYLMEAHSL---------AGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETF   81 (460)
T ss_dssp             TTSGGGGGCBCHHHHHHHHTTCC---------TTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred             ccccchhhhhHHHHHHHHhHHHh---------hccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEE
Confidence            34556666777777777763332         345764321   111111223789999999999999999999999999


Q ss_pred             EEcCCCCCC-------------CCc-------------ccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCc
Q 035615          107 YNSRRKRPS-------------VLF-------------PYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGG  160 (223)
Q Consensus       107 ~~~~~~~~~-------------~~~-------------~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga  160 (223)
                      +||+++++.             .+.             ....+++ .+++||+|+.++|...+.+..+-++..+.+++++
T Consensus        82 l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~a  160 (460)
T 3k6j_A           82 LVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKSTC  160 (460)
T ss_dssp             EECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTC
T ss_pred             EEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCC
Confidence            999987521             011             1234564 6889999999999877665544466777899999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615          161 MIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE  194 (223)
Q Consensus       161 ~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~  194 (223)
                      +|+..+.+  +....+.+.+.. .-...++.-|.
T Consensus       161 IlasnTSs--l~i~~ia~~~~~-p~r~iG~Hffn  191 (460)
T 3k6j_A          161 IFGTNTSS--LDLNEISSVLRD-PSNLVGIHFFN  191 (460)
T ss_dssp             EEEECCSS--SCHHHHHTTSSS-GGGEEEEECCS
T ss_pred             EEEecCCC--hhHHHHHHhccC-CcceEEEEecc
Confidence            99643333  344566665543 23446777666

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.96  E-value=9e-10  Score=98.88  Aligned_cols=110  Identities=13%  Similarity=0.094  Sum_probs=82.4

Q ss_pred             CccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----------------------CcccccChhhhhc
Q 035615           73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----------------------LFPYCANVYDLAV  129 (223)
Q Consensus        73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----------------------~~~~~~~l~el~~  129 (223)
                      .+++..-++|+|||+|.||..+|..|.. |++|++||++++..+                       ......++++.++
T Consensus        30 ~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~  108 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYR  108 (432)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHT
T ss_pred             cccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHh
Confidence            4566777899999999999999999988 999999998865321                       1223467788999


Q ss_pred             CCcEEEEeccCChh----------hhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 035615          130 NSDVLVVCCALTEQ----------THHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDI  185 (223)
Q Consensus       130 ~aDiv~~~~p~t~~----------t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i  185 (223)
                      .||+|++++|....          .+..+ +...+ +++++++|+.|+-.+-..+.+.+.+.+..+
T Consensus       109 ~aDvViiaVPt~~~~~~~~~Dl~~V~~v~-~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v  172 (432)
T 3pid_A          109 NADYVIIATPTDYDPKTNYFNTSTVEAVI-RDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV  172 (432)
T ss_dssp             TCSEEEECCCCEEETTTTEEECHHHHHHH-HHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE
T ss_pred             CCCEEEEeCCCccccccccccHHHHHHHH-HHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE
Confidence            99999999995421          12222 44566 899999999999888888899988877644

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.94  E-value=5.8e-10  Score=85.03  Aligned_cols=97  Identities=18%  Similarity=0.260  Sum_probs=74.3

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------Cc--ccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LF--PYCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~--~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      +++|+|||.|.||+.+++.|+..|++|.+++|++....      +.  ....+++++++++|+|+.++|..   ..++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~~~   97 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIVEE   97 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSBCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEeeH
Confidence            89999999999999999999999999999999865432      11  13467889999999999999865   345554


Q ss_pred             HHHhcCCCCcEEEEcCCCcc-------cCHHHHHHHHH
Q 035615          151 DVMAELGKGGMIINVGRGAL-------IDEKEMLQFLV  181 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~-------vd~~al~~aL~  181 (223)
                         +.++++.+++|++...-       ++.+++.+.++
T Consensus        98 ---~~l~~g~~vid~~~p~~~~~~~~~~~~d~l~~~~~  132 (144)
T 3oj0_A           98 ---RSLMPGKLFIDLGNPPNIERGNNVITLDEIYEISK  132 (144)
T ss_dssp             ---GGCCTTCEEEECCSSCSBCCSTTSEEHHHHHHHHH
T ss_pred             ---HHcCCCCEEEEccCCccCCCCCEEEeHHHHHHHHH
Confidence               45688999999997543       34455555443

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.92  E-value=3.4e-09  Score=80.86  Aligned_cols=103  Identities=16%  Similarity=0.225  Sum_probs=80.6

Q ss_pred             cCCCEEEEEec----ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           77 LGGMQVGIVRL----GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        77 l~g~~vgIiG~----G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      ++-++|+|||.    |++|+.+++.|+..|++|+.+++..+...+...+.+++|+....|++++++| .+....++. +.
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~~-~~   89 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVAK-EA   89 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHHH-HH
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHHH-HH
Confidence            56789999999    9999999999999999988888876555566667899999999999999999 566666663 34


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      .+ ...++++++.+.    ..+.+.+..++..+.
T Consensus        90 ~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~  118 (138)
T 1y81_A           90 VE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE  118 (138)
T ss_dssp             HH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred             HH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence            44 566777777643    257788888887776

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.91  E-value=2.9e-09  Score=91.94  Aligned_cols=102  Identities=16%  Similarity=0.215  Sum_probs=77.0

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCC----CEEEEEcCCCC--CCC-----CcccccChhhhhcCCcEEEEeccCChhhh
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFG----FIISYNSRRKR--PSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~--~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~  145 (223)
                      ...++|+|||+|.||..+|+.|...|    .+|.+|+|+++  ..+     +.....+..++++.+|+|++++| .....
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~   98 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIP   98 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHH
Confidence            44578999999999999999999988    78999999875  221     33334578888999999999999 45566


Q ss_pred             hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 035615          146 HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQ  182 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~  182 (223)
                      .++ .+....++++.++|+++.|--  .+.+.+.+.+
T Consensus        99 ~vl-~~l~~~l~~~~ivvs~s~gi~--~~~l~~~l~~  132 (322)
T 2izz_A           99 FIL-DEIGADIEDRHIVVSCAAGVT--ISSIEKKLSA  132 (322)
T ss_dssp             HHH-HHHGGGCCTTCEEEECCTTCC--HHHHHHHHHT
T ss_pred             HHH-HHHHhhcCCCCEEEEeCCCCC--HHHHHHHHhh
Confidence            655 345566888999999987643  4456666664

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.90  E-value=1.1e-09  Score=92.71  Aligned_cols=87  Identities=13%  Similarity=0.212  Sum_probs=69.5

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      ++|+|||+ |.||+.+++.|...|++|++|+|+++..+     +.. ..+..++++++|+|++++|.. .+..++ ++..
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~-~~~~~~~~~~aDvVi~av~~~-~~~~v~-~~l~   88 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIP-LTDGDGWIDEADVVVLALPDN-IIEKVA-EDIV   88 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCC-CCCSSGGGGTCSEEEECSCHH-HHHHHH-HHHG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCC-cCCHHHHhcCCCEEEEcCCch-HHHHHH-HHHH
Confidence            58999999 99999999999999999999998764321     221 236778889999999999854 355555 4556


Q ss_pred             hcCCCCcEEEEcCCCc
Q 035615          154 AELGKGGMIINVGRGA  169 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~  169 (223)
                      ..+++++++|+++.|.
T Consensus        89 ~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           89 PRVRPGTIVLILDAAA  104 (286)
T ss_dssp             GGSCTTCEEEESCSHH
T ss_pred             HhCCCCCEEEECCCCc
Confidence            6789999999998886

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.90  E-value=9.7e-10  Score=91.23  Aligned_cols=99  Identities=14%  Similarity=0.234  Sum_probs=74.1

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC----EEEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF----IISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~----~V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      ++|+|||+|+||+.+++.|...|+    +|.+|||+++..+      +.....+..++++++|+|++++|. .....++ 
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~-~~~~~v~-   80 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKP-DLYASII-   80 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCT-TTHHHHC-
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCH-HHHHHHH-
Confidence            689999999999999999999998    8999999875432      334456888999999999999973 3455555 


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 035615          150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQ  182 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~  182 (223)
                      ++....++++.++|.+..|--  .+.+.+.+..
T Consensus        81 ~~l~~~l~~~~~vvs~~~gi~--~~~l~~~~~~  111 (247)
T 3gt0_A           81 NEIKEIIKNDAIIVTIAAGKS--IESTENAFNK  111 (247)
T ss_dssp             ---CCSSCTTCEEEECSCCSC--HHHHHHHHCS
T ss_pred             HHHHhhcCCCCEEEEecCCCC--HHHHHHHhCC
Confidence            445566888999997765543  4566666644

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.89  E-value=1e-09  Score=89.53  Aligned_cols=90  Identities=17%  Similarity=0.272  Sum_probs=68.2

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      ..++|+|||+|.||+.+++.|...|++|.+++|+++...     +.. ..+++++++++|+|++++|. .....++.   
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~-~~~~~~~~~~~DvVi~av~~-~~~~~v~~---  101 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQ-VTFQEEAVSSPEVIFVAVFR-EHYSSLCS---  101 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSE-EEEHHHHTTSCSEEEECSCG-GGSGGGGG---
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc-eecHHHHHhCCCEEEECCCh-HHHHHHHH---
Confidence            457899999999999999999999999999998764321     222 23778889999999999994 34555553   


Q ss_pred             HhcCCCCcEEEEcCCCcccC
Q 035615          153 MAELGKGGMIINVGRGALID  172 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd  172 (223)
                      ++.+.+++++|++++|...+
T Consensus       102 l~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A          102 LSDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             GHHHHTTCEEEECCCCCHHH
T ss_pred             HHHhcCCCEEEEeCCCcccc
Confidence            33333799999999997654

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.89  E-value=3e-09  Score=88.53  Aligned_cols=96  Identities=20%  Similarity=0.309  Sum_probs=73.4

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      ++|||||+|.||+.+++.|...|.+|.+|+|+++...      +...+.+++++++++|+|++++| .....     +.+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~-----~v~   77 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFE-----TVL   77 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHH-----HHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHH-----HHH
Confidence            5899999999999999999999999999999865422      33345688899999999999999 43333     344


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      ..++++.++|++..|--  .+.+.+.+..+
T Consensus        78 ~~l~~~~~vv~~~~~~~--~~~l~~~~~~~  105 (259)
T 2ahr_A           78 KPLHFKQPIISMAAGIS--LQRLATFVGQD  105 (259)
T ss_dssp             TTSCCCSCEEECCTTCC--HHHHHHHHCTT
T ss_pred             HHhccCCEEEEeCCCCC--HHHHHHhcCCC
Confidence            45678899999976644  34566666543

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.88  E-value=5.1e-09  Score=87.17  Aligned_cols=99  Identities=16%  Similarity=0.352  Sum_probs=71.3

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCC----CEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFG----FIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA  154 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~  154 (223)
                      .++|+|||+|.||+.+++.|...|    .+|.+|||+++. .+.....+..++++++|+|++++| ....+.++. +...
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-~g~~~~~~~~~~~~~~D~vi~~v~-~~~~~~v~~-~l~~   80 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-TTLNYMSSNEELARHCDIIVCAVK-PDIAGSVLN-NIKP   80 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-SSSEECSCHHHHHHHCSEEEECSC-TTTHHHHHH-HSGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-CceEEeCCHHHHHhcCCEEEEEeC-HHHHHHHHH-HHHH
Confidence            468999999999999999998888    689999998765 444445678888999999999999 445555542 3444


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          155 ELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       155 ~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      .++ +.++|....|  ++.+.+.+.+..+
T Consensus        81 ~l~-~~~vv~~~~g--i~~~~l~~~~~~~  106 (262)
T 2rcy_A           81 YLS-SKLLISICGG--LNIGKLEEMVGSE  106 (262)
T ss_dssp             GCT-TCEEEECCSS--CCHHHHHHHHCTT
T ss_pred             hcC-CCEEEEECCC--CCHHHHHHHhCCC
Confidence            564 5555555444  3334666666553

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.87  E-value=6.9e-09  Score=93.69  Aligned_cols=102  Identities=6%  Similarity=0.139  Sum_probs=78.4

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------------------CcccccChhhhhcCCcEE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------------------LFPYCANVYDLAVNSDVL  134 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------------------~~~~~~~l~el~~~aDiv  134 (223)
                      ++|+|||+|.||..+|..|...|++|++||++++..+                         ......+++++++.||+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            6899999999999999999999999999998864211                         012346788889999999


Q ss_pred             EEeccCCh---------hhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 035615          135 VVCCALTE---------QTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQ  182 (223)
Q Consensus       135 ~~~~p~t~---------~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~  182 (223)
                      ++++|...         ..+..+ +...+.++++.++|+.|.-.+-..+.+.+.+++
T Consensus        83 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           83 FIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            99998543         333333 456677899999999997665556667666655

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.87  E-value=1.4e-09  Score=93.66  Aligned_cols=106  Identities=18%  Similarity=0.201  Sum_probs=77.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHHh-CCC-EEEEEcCCCCCCC------C--cccccChhhhhcCCcEEEEeccCChhhhhc
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQA-FGF-IISYNSRRKRPSV------L--FPYCANVYDLAVNSDVLVVCCALTEQTHHI  147 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~------~--~~~~~~l~el~~~aDiv~~~~p~t~~t~~l  147 (223)
                      ..++|||||+|.||+.+++.+.. +|+ +|.+|||+++..+      +  .....+++++++++|+|++++|.   .+.+
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~---~~~v  210 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLA---TEPI  210 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCC---SSCC
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCC---CCcc
Confidence            46799999999999999999875 487 8999999865432      2  33457889999999999999984   3556


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615          148 INKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV  192 (223)
Q Consensus       148 i~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV  192 (223)
                      +..   +.+++|.++++++....-. ..+.+.+.+...  .++|-
T Consensus       211 ~~~---~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~--~~vD~  249 (312)
T 2i99_A          211 LFG---EWVKPGAHINAVGASRPDW-RELDDELMKEAV--LYVDS  249 (312)
T ss_dssp             BCG---GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSE--EEESC
T ss_pred             cCH---HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCE--EEECC
Confidence            654   4689999999998766532 334433333333  36773

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.84  E-value=2.3e-08  Score=90.17  Aligned_cols=104  Identities=10%  Similarity=0.200  Sum_probs=80.8

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----C---------------------cccccChhhhhcCCcE
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----L---------------------FPYCANVYDLAVNSDV  133 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~---------------------~~~~~~l~el~~~aDi  133 (223)
                      .-+++|||+|.||..+|..|...|++|++||+++++.+    +                     .....++.+.+++||+
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDv   87 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADA   87 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSE
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCE
Confidence            35799999999999999999999999999999876421    1                     1234678889999999


Q ss_pred             EEEeccCCh----------hhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          134 LVVCCALTE----------QTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       134 v~~~~p~t~----------~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      |++|+|...          ..+..+ +...+.++++.++|+.|.-.+-..+.+.+.+.+.
T Consensus        88 vii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~  146 (446)
T 4a7p_A           88 VFIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV  146 (446)
T ss_dssp             EEECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH
T ss_pred             EEEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh
Confidence            999988432          133333 4567789999999999977766677777777653

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.83  E-value=4.7e-09  Score=89.58  Aligned_cols=112  Identities=10%  Similarity=0.083  Sum_probs=76.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C------------------cccccChh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L------------------FPYCANVY  125 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~------------------~~~~~~l~  125 (223)
                      ++|+|||.|.||..+|..+...|++|++||++++..+                +                  .....+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            6899999999999999999999999999999854311                0                  11235677


Q ss_pred             hhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615          126 DLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE  194 (223)
Q Consensus       126 el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~  194 (223)
                      +.+++||+|++++|...+....+-++..+.++++++++....+-  ....+.+.+... -...+...+.
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i--~~~~l~~~~~~~-~~~~g~h~~~  161 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATTRQ-DRFAGLHFFN  161 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSCG-GGEEEEEECS
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCC--CHHHHHHhcCCc-ccEEEEecCC
Confidence            78999999999999765443333344556678899888554443  334555554321 1224555443

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.82  E-value=7.9e-09  Score=92.80  Aligned_cols=102  Identities=12%  Similarity=0.156  Sum_probs=77.5

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------------------------C-cccccChhhhhcCCcEE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------------------------L-FPYCANVYDLAVNSDVL  134 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~el~~~aDiv  134 (223)
                      ++|+|||+|.||..+|..|...|++|+++|++++...                        + .....++++.++.||+|
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            4799999999999999999999999999998754211                        1 22345677888999999


Q ss_pred             EEeccCChh---------hhhccCHHHHhcCCC---CcEEEEcCCCcccC-HHHHHHHHHc
Q 035615          135 VVCCALTEQ---------THHIINKDVMAELGK---GGMIINVGRGALID-EKEMLQFLVQ  182 (223)
Q Consensus       135 ~~~~p~t~~---------t~~li~~~~l~~mk~---ga~lIN~arg~~vd-~~al~~aL~~  182 (223)
                      ++++|....         .+..+ ++..+.+++   +.++|+.|...+-. .+.+.+.+++
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             EEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            999985443         33333 445556788   99999998777655 6677777766

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.81  E-value=4.9e-09  Score=88.86  Aligned_cols=100  Identities=16%  Similarity=0.174  Sum_probs=76.5

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCC---EEEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGF---IISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~---~V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      .++|||||+|+||+.+++.+...|+   +|.+|||+++...      +.....+..++++++|+|++++|. .....++ 
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl-   80 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVC-   80 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHH-
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHH-
Confidence            4789999999999999999999998   8999999875432      334456888999999999999973 3445554 


Q ss_pred             HHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 035615          150 KDVMAE-LGKGGMIINVGRGALIDEKEMLQFLVQ  182 (223)
Q Consensus       150 ~~~l~~-mk~ga~lIN~arg~~vd~~al~~aL~~  182 (223)
                      ++.... ++++.++|++.-|--  .+.|.+.+..
T Consensus        81 ~~l~~~~l~~~~iiiS~~agi~--~~~l~~~l~~  112 (280)
T 3tri_A           81 EELKDILSETKILVISLAVGVT--TPLIEKWLGK  112 (280)
T ss_dssp             HHHHHHHHTTTCEEEECCTTCC--HHHHHHHHTC
T ss_pred             HHHHhhccCCCeEEEEecCCCC--HHHHHHHcCC
Confidence            334444 688889998876643  4667777765

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.80  E-value=4.1e-09  Score=87.78  Aligned_cols=96  Identities=19%  Similarity=0.293  Sum_probs=70.4

Q ss_pred             CEEEEEecChHHHHHHHHHHhCC-CEEEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFG-FIISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      ++|+|||+|.||+.+++.|...| .+|.+|+|+++...      +.....+.++++ ++|+|++++| ......++.+  
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~~~--   76 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAACKN--   76 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHHTT--
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHHHH--
Confidence            47999999999999999999889 99999999865322      333345677888 9999999999 5555544431  


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          153 MAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      +.. + +.++|+++.|--.  +.+.+.+..+
T Consensus        77 l~~-~-~~ivv~~~~g~~~--~~l~~~~~~~  103 (263)
T 1yqg_A           77 IRT-N-GALVLSVAAGLSV--GTLSRYLGGT  103 (263)
T ss_dssp             CCC-T-TCEEEECCTTCCH--HHHHHHTTSC
T ss_pred             hcc-C-CCEEEEecCCCCH--HHHHHHcCCC
Confidence            122 4 8899998655433  6677777653

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.78  E-value=3.2e-08  Score=81.53  Aligned_cols=99  Identities=20%  Similarity=0.217  Sum_probs=75.1

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEE-EEEcCCCCCCCCcccccChhhhh-cCCcEEEEeccCChhhhhccCHHHHhcCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFII-SYNSRRKRPSVLFPYCANVYDLA-VNSDVLVVCCALTEQTHHIINKDVMAELG  157 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V-~~~~~~~~~~~~~~~~~~l~el~-~~aDiv~~~~p~t~~t~~li~~~~l~~mk  157 (223)
                      ++|||||+|.||+.+++.+...|+++ .++|++.+. ..  .+.++++++ .++|+|++++|.... .    +.....++
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~-~~--~~~~~~~l~~~~~DvVv~~~~~~~~-~----~~~~~~l~   72 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEH-EK--MVRGIDEFLQREMDVAVEAASQQAV-K----DYAEKILK   72 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCC-TT--EESSHHHHTTSCCSEEEECSCHHHH-H----HHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcch-hh--hcCCHHHHhcCCCCEEEECCCHHHH-H----HHHHHHHH
Confidence            47999999999999999998889997 688887532 22  467899999 699999999983322 2    22344567


Q ss_pred             CCcEEEEcCCCcccCH---HHHHHHHHcCCce
Q 035615          158 KGGMIINVGRGALIDE---KEMLQFLVQGDIN  186 (223)
Q Consensus       158 ~ga~lIN~arg~~vd~---~al~~aL~~~~i~  186 (223)
                      .|..+|+.+.+..-++   +.|.++.++.+..
T Consensus        73 ~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~  104 (236)
T 2dc1_A           73 AGIDLIVLSTGAFADRDFLSRVREVCRKTGRR  104 (236)
T ss_dssp             TTCEEEESCGGGGGSHHHHHHHHHHHHHHCCC
T ss_pred             CCCcEEEECcccCChHHHHHHHHHHHHhcCCe
Confidence            8999999998887666   5677777765443

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.77  E-value=8e-09  Score=79.37  Aligned_cols=101  Identities=13%  Similarity=0.197  Sum_probs=79.4

Q ss_pred             CCEEEEEec----ChHHHHHHHHHHhCCCEEEEEcCCC--CCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           79 GMQVGIVRL----GNIGSEVLNRLQAFGFIISYNSRRK--RPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        79 g~~vgIiG~----G~iG~~~a~~l~~~G~~V~~~~~~~--~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      -++|+|||.    |++|..+++.|...|++|+.+++..  +...+...+.+++|+....|++++++| .+....++. +.
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~~-~~   90 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRN-SEAAWGVAQ-EA   90 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCSC-STHHHHHHH-HH
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHHH-HH
Confidence            678999999    8999999999999999988888876  444466667789999889999999999 466666663 34


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      .+ ...++++++.+  ..  ++.+.+++++..+.
T Consensus        91 ~~-~g~~~i~i~~~--~~--~~~l~~~a~~~Gi~  119 (145)
T 2duw_A           91 IA-IGAKTLWLQLG--VI--NEQAAVLAREAGLS  119 (145)
T ss_dssp             HH-HTCCEEECCTT--CC--CHHHHHHHHTTTCE
T ss_pred             HH-cCCCEEEEcCC--hH--HHHHHHHHHHcCCE
Confidence            44 56667777753  22  67888888888877

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.76  E-value=1.6e-08  Score=87.69  Aligned_cols=100  Identities=16%  Similarity=0.141  Sum_probs=73.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------C-----c---------ccccChhhhhcCCcEEEEecc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------L-----F---------PYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~-----~---------~~~~~l~el~~~aDiv~~~~p  139 (223)
                      ++|+|||+|.||..+|..|...|++|.+++|+++...      +     .         ....+++++++.+|+|++++|
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            6899999999999999999999999999998754211      1     0         124577888899999999999


Q ss_pred             CChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 035615          140 LTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQ  182 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~  182 (223)
                      ... +..++ ++..+.+++++++|+. .|.......+.+.+.+
T Consensus        85 ~~~-~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~  124 (359)
T 1bg6_A           85 AIH-HASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE  124 (359)
T ss_dssp             GGG-HHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred             chH-HHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence            554 44544 4566678999999998 4422344445566655

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.74  E-value=2e-08  Score=84.27  Aligned_cols=88  Identities=23%  Similarity=0.243  Sum_probs=66.4

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc-------c-----cccChhhhhcCCcEEEEeccCChhhhhc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF-------P-----YCANVYDLAVNSDVLVVCCALTEQTHHI  147 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~-------~-----~~~~l~el~~~aDiv~~~~p~t~~t~~l  147 (223)
                      ++|+|||.|.||..+|..|...|++|.+++|+++.....       .     ...+..+.++.+|+|++++|.. .+..+
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~-~~~~v   79 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW-QVSDA   79 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG-GHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHH-hHHHH
Confidence            479999999999999999999999999999987543210       0     0123346778999999999954 45555


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCc
Q 035615          148 INKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       148 i~~~~l~~mk~ga~lIN~arg~  169 (223)
                      + ++....+++++++|++..|-
T Consensus        80 ~-~~l~~~l~~~~~vv~~~~g~  100 (291)
T 1ks9_A           80 V-KSLASTLPVTTPILLIHNGM  100 (291)
T ss_dssp             H-HHHHTTSCTTSCEEEECSSS
T ss_pred             H-HHHHhhCCCCCEEEEecCCC
Confidence            5 45566788899999987653

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.74  E-value=9.7e-09  Score=82.78  Aligned_cols=112  Identities=19%  Similarity=0.173  Sum_probs=80.2

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC------C------cccccChhhhhcCCcEEEEeccCChhhhh
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV------L------FPYCANVYDLAVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~------~~~~~~l~el~~~aDiv~~~~p~t~~t~~  146 (223)
                      ++|+|+| .|.||+.+++.|...|++|.+++|+++...      +      .....+++++++++|+|++++| ...++.
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~-~~~~~~   79 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIP-WEHAID   79 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSC-HHHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCC-hhhHHH
Confidence            4799999 999999999999999999999998754321      1      0113467788899999999998 334444


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccC------------HHHHHHHHHcCCceEEEeeCCCCCCC
Q 035615          147 IINKDVMAELGKGGMIINVGRGALID------------EKEMLQFLVQGDINGVGLDVFENDPN  198 (223)
Q Consensus       147 li~~~~l~~mk~ga~lIN~arg~~vd------------~~al~~aL~~~~i~~a~lDV~~~EP~  198 (223)
                      ++. +..+.++ +.++|+++.|--.+            .+.+.+.+..  .  ..++++.++|.
T Consensus        80 ~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~--~--~~v~~~~~~~~  137 (212)
T 1jay_A           80 TAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES--E--KVVSALHTIPA  137 (212)
T ss_dssp             HHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC--S--CEEECCTTCCH
T ss_pred             HHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC--C--eEEEEccchHH
Confidence            442 3334454 89999999876532            5667776653  2  36688877663

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.71  E-value=3.1e-08  Score=85.99  Aligned_cols=90  Identities=17%  Similarity=0.134  Sum_probs=69.2

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCC-------CEEEEEcCCCC-----CCC-------------------CcccccChhhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFG-------FIISYNSRRKR-----PSV-------------------LFPYCANVYDL  127 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G-------~~V~~~~~~~~-----~~~-------------------~~~~~~~l~el  127 (223)
                      .++|+|||.|.||..+|..|...|       .+|.+|+|++.     ...                   ......++++.
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA   87 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence            468999999999999999998888       89999998765     110                   01123567788


Q ss_pred             hcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcc
Q 035615          128 AVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGAL  170 (223)
Q Consensus       128 ~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~  170 (223)
                      ++.+|+|++++|. ..+..++ ++....+++++++|+++.|-.
T Consensus        88 ~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           88 AEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             HcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            8999999999994 4455554 345566788999999988754

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.70  E-value=9.2e-09  Score=90.20  Aligned_cols=92  Identities=11%  Similarity=0.035  Sum_probs=72.3

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------C------cccccChhhhhcCCcEEEEecc
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------L------FPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------~------~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      .++|+|||.|.||..+|..|...|++|.+|+|+++..+             +      .....++++.++.+|+|++++|
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp  108 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVP  108 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCC
Confidence            46899999999999999999999999999999754211             0      1224678889999999999999


Q ss_pred             CChhhhhccCHHHHhcCCCCcEEEEcCCCcccC
Q 035615          140 LTEQTHHIINKDVMAELGKGGMIINVGRGALID  172 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd  172 (223)
                      . ...+.++ ++....+++++++|+++.|-..+
T Consensus       109 ~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~  139 (356)
T 3k96_A          109 S-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAKG  139 (356)
T ss_dssp             H-HHHHHHH-HHHGGGCCTTCEEEECCCSCBTT
T ss_pred             H-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCcC
Confidence            3 3555555 45666788999999998876654

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.68  E-value=2.1e-08  Score=86.10  Aligned_cols=100  Identities=13%  Similarity=0.045  Sum_probs=72.0

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcC--CCCCCC-----Cc-----------cccc--ChhhhhcCCcEEEEecc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSR--RKRPSV-----LF-----------PYCA--NVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~--~~~~~~-----~~-----------~~~~--~l~el~~~aDiv~~~~p  139 (223)
                      ++|+|||+|.||+.+|..|...|++|.+++|  +++..+     +.           ....  ++.+.++.+|+|++++|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            4799999999999999999988999999998  643211     11           1223  66778899999999999


Q ss_pred             CChhhhhccCHHHHhcCCCCcEEEEcCCCc---c-cCHHHHHHHHHc
Q 035615          140 LTEQTHHIINKDVMAELGKGGMIINVGRGA---L-IDEKEMLQFLVQ  182 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~mk~ga~lIN~arg~---~-vd~~al~~aL~~  182 (223)
                      .. .+..++ ++... ++++.++|+++.|-   - -..+.+.+.+.+
T Consensus        81 ~~-~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           81 TD-GVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             GG-GHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             hH-HHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            54 455554 34555 88899999998775   1 122345555654

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.67  E-value=2.4e-08  Score=81.52  Aligned_cols=87  Identities=18%  Similarity=0.239  Sum_probs=63.2

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEE-EcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccCHH
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISY-NSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~-~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~  151 (223)
                      -++|+|||+|+||+.+|+.|...|++|.+ ++|+++..+      +.....+..+.++++|+|++++|. .....++.+ 
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~-~~~~~v~~~-  100 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPY-DSIADIVTQ-  100 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCG-GGHHHHHTT-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCCh-HHHHHHHHH-
Confidence            46899999999999999999999999988 999876543      222234555668899999999983 233333321 


Q ss_pred             HHhcCCCCcEEEEcCCCc
Q 035615          152 VMAELGKGGMIINVGRGA  169 (223)
Q Consensus       152 ~l~~mk~ga~lIN~arg~  169 (223)
                       +.. .++.++|+++-|-
T Consensus       101 -l~~-~~~~ivi~~~~g~  116 (220)
T 4huj_A          101 -VSD-WGGQIVVDASNAI  116 (220)
T ss_dssp             -CSC-CTTCEEEECCCCB
T ss_pred             -hhc-cCCCEEEEcCCCC
Confidence             122 2578999998664

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.67  E-value=3.9e-08  Score=89.43  Aligned_cols=103  Identities=9%  Similarity=0.087  Sum_probs=75.1

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------------C-------------cccccChhhhhcCCcE
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------------L-------------FPYCANVYDLAVNSDV  133 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------------~-------------~~~~~~l~el~~~aDi  133 (223)
                      .++|+|||+|.||..+|..|...|++|++||++++..+            +             .....++++.++.||+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv   87 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV   87 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence            57999999999999999999999999999998754211            1             1223466678889999


Q ss_pred             EEEeccCC---------hhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 035615          134 LVVCCALT---------EQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQ  182 (223)
Q Consensus       134 v~~~~p~t---------~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~  182 (223)
                      |++|+|..         ...+..+ +...+.+++++++|+.+.-.+-..+.+.+.+.+
T Consensus        88 viiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~  144 (478)
T 2y0c_A           88 QFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAE  144 (478)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHH
Confidence            99999852         3344443 445667899999999985444444555555543

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.67  E-value=2.2e-08  Score=88.00  Aligned_cols=88  Identities=10%  Similarity=0.151  Sum_probs=67.5

Q ss_pred             CEEEEEecChHHHHHHHHHHhCC-------CEEEEEcCCCC-----CCC-------------------CcccccChhhhh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFG-------FIISYNSRRKR-----PSV-------------------LFPYCANVYDLA  128 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G-------~~V~~~~~~~~-----~~~-------------------~~~~~~~l~el~  128 (223)
                      ++|+|||.|.||..+|..|...|       .+|.+|+|+++     ..+                   ......++++.+
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~  101 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI  101 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence            47999999999999999998878       89999998765     211                   112235677888


Q ss_pred             cCCcEEEEeccCChhhhhccCHHHHh----cCCCCcEEEEcCCCc
Q 035615          129 VNSDVLVVCCALTEQTHHIINKDVMA----ELGKGGMIINVGRGA  169 (223)
Q Consensus       129 ~~aDiv~~~~p~t~~t~~li~~~~l~----~mk~ga~lIN~arg~  169 (223)
                      +.+|+|++++| +...+.++ ++...    .+++++++|+++.|-
T Consensus       102 ~~aDvVilav~-~~~~~~vl-~~i~~~~~~~l~~~~ivvs~~~Gi  144 (375)
T 1yj8_A          102 NDADLLIFIVP-CQYLESVL-ASIKESESIKIASHAKAISLTKGF  144 (375)
T ss_dssp             TTCSEEEECCC-HHHHHHHH-HHHTC---CCCCTTCEEEECCCSC
T ss_pred             cCCCEEEEcCC-HHHHHHHH-HHHhhhhhccCCCCCEEEEeCCcc
Confidence            99999999999 35555554 23444    678899999998873

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.66  E-value=1.1e-08  Score=93.27  Aligned_cols=114  Identities=9%  Similarity=0.094  Sum_probs=80.4

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------Cc-------------ccccChhhhhc
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------LF-------------PYCANVYDLAV  129 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~~-------------~~~~~l~el~~  129 (223)
                      -++|||||.|.||..+|+.+...|++|++||++++..+                +.             ....+++ .++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~   83 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA   83 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence            45899999999999999999999999999999865321                10             1134554 588


Q ss_pred             CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCC
Q 035615          130 NSDVLVVCCALTEQTHHIINKDVMAELGKGGMII-NVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP  197 (223)
Q Consensus       130 ~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lI-N~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP  197 (223)
                      +||+|+.++|...+.+.-+-++..+.++++++|+ |+|.-+   ...+.+.+.. .-...++..|.+-|
T Consensus        84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~---i~~ia~~~~~-p~~~ig~hf~~Pa~  148 (483)
T 3mog_A           84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS---ITAIAAEIKN-PERVAGLHFFNPAP  148 (483)
T ss_dssp             GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSC---HHHHTTTSSS-GGGEEEEEECSSTT
T ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCC---HHHHHHHccC-ccceEEeeecChhh
Confidence            9999999999876655444356777789999984 676544   3455555542 23445677665444

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.65  E-value=9.1e-08  Score=81.08  Aligned_cols=80  Identities=19%  Similarity=0.351  Sum_probs=67.9

Q ss_pred             cccCCCEEEEEecCh-HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           75 FKLGGMQVGIVRLGN-IGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      .+++|+++.|||.|. +|+.+|..|...|++|.+.++..         .++++.+++||+|+.+++.    .++|..++ 
T Consensus       156 i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t---------~~L~~~~~~ADIVI~Avg~----p~~I~~~~-  221 (285)
T 3p2o_A          156 IDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------KDLSLYTRQADLIIVAAGC----VNLLRSDM-  221 (285)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------SCHHHHHTTCSEEEECSSC----TTCBCGGG-
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHhhcCCEEEECCCC----CCcCCHHH-
Confidence            468999999999988 69999999999999999987643         4789999999999999972    44577765 


Q ss_pred             hcCCCCcEEEEcCCCcc
Q 035615          154 AELGKGGMIINVGRGAL  170 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~  170 (223)
                        +|+|+++||++.-.+
T Consensus       222 --vk~GavVIDVgi~~~  236 (285)
T 3p2o_A          222 --VKEGVIVVDVGINRL  236 (285)
T ss_dssp             --SCTTEEEEECCCEEC
T ss_pred             --cCCCeEEEEeccCcc
Confidence              599999999996553

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.64  E-value=2.4e-08  Score=84.78  Aligned_cols=104  Identities=13%  Similarity=0.134  Sum_probs=72.7

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc------------ccChhhhhc---CCcEEEEecc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY------------CANVYDLAV---NSDVLVVCCA  139 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~------------~~~l~el~~---~aDiv~~~~p  139 (223)
                      ++|+|||.|.||+.+|..|...|++|.+++|+++..+     +...            ..+.+++.+   .+|+|++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            5899999999999999999999999999998764321     1100            113344444   8999999998


Q ss_pred             CChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          140 LTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      . ..+..++ ++..+.+++++++|+++.|- -..+.+.+.+.+.++.
T Consensus        84 ~-~~~~~v~-~~l~~~l~~~~~iv~~~~g~-~~~~~l~~~~~~~~vi  127 (316)
T 2ew2_A           84 A-QQLDAMF-KAIQPMITEKTYVLCLLNGL-GHEDVLEKYVPKENIL  127 (316)
T ss_dssp             H-HHHHHHH-HHHGGGCCTTCEEEECCSSS-CTHHHHTTTSCGGGEE
T ss_pred             c-ccHHHHH-HHHHHhcCCCCEEEEecCCC-CcHHHHHHHcCCccEE
Confidence            3 4555554 34556788999999998753 2345566666554443

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.64  E-value=7.8e-08  Score=82.08  Aligned_cols=80  Identities=13%  Similarity=0.256  Sum_probs=67.2

Q ss_pred             cccCCCEEEEEecCh-HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChh--hhhcCCcEEEEeccCChhhhhccCHH
Q 035615           75 FKLGGMQVGIVRLGN-IGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVY--DLAVNSDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~--el~~~aDiv~~~~p~t~~t~~li~~~  151 (223)
                      .+++|+++.|||.|. +|+.+|+.|...|++|.++++..         .+++  +.+++||+|+.++|.    .++|.++
T Consensus       161 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T---------~~l~l~~~~~~ADIVI~Avg~----p~~I~~~  227 (300)
T 4a26_A          161 IEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT---------STEDMIDYLRTADIVIAAMGQ----PGYVKGE  227 (300)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS---------CHHHHHHHHHTCSEEEECSCC----TTCBCGG
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC---------CCchhhhhhccCCEEEECCCC----CCCCcHH
Confidence            468999999999988 69999999999999999998743         2566  999999999999983    3467776


Q ss_pred             HHhcCCCCcEEEEcCCCcc
Q 035615          152 VMAELGKGGMIINVGRGAL  170 (223)
Q Consensus       152 ~l~~mk~ga~lIN~arg~~  170 (223)
                      +   +|+|+++||++.-.+
T Consensus       228 ~---vk~GavVIDvgi~~~  243 (300)
T 4a26_A          228 W---IKEGAAVVDVGTTPV  243 (300)
T ss_dssp             G---SCTTCEEEECCCEEE
T ss_pred             h---cCCCcEEEEEeccCC
Confidence            5   599999999996543

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.64  E-value=1.1e-07  Score=80.60  Aligned_cols=79  Identities=22%  Similarity=0.331  Sum_probs=67.2

Q ss_pred             cccCCCEEEEEecCh-HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           75 FKLGGMQVGIVRLGN-IGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      .+++|+++.|||.|. +|+.+|+.|...|++|.+.++..         .++++.+++||+|+.+++.    .++|..++ 
T Consensus       157 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------~~L~~~~~~ADIVI~Avg~----p~~I~~~~-  222 (285)
T 3l07_A          157 IKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------TDLKSHTTKADILIVAVGK----PNFITADM-  222 (285)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------SSHHHHHTTCSEEEECCCC----TTCBCGGG-
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------hhHHHhcccCCEEEECCCC----CCCCCHHH-
Confidence            468999999999988 69999999999999999887642         4789999999999999972    34577765 


Q ss_pred             hcCCCCcEEEEcCCCc
Q 035615          154 AELGKGGMIINVGRGA  169 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~  169 (223)
                        +|+|+++||++.-.
T Consensus       223 --vk~GavVIDvgi~~  236 (285)
T 3l07_A          223 --VKEGAVVIDVGINH  236 (285)
T ss_dssp             --SCTTCEEEECCCEE
T ss_pred             --cCCCcEEEEecccC
Confidence              59999999999654

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.64  E-value=5.3e-08  Score=82.57  Aligned_cols=107  Identities=10%  Similarity=0.059  Sum_probs=76.2

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCCcc------cccChhhhhcCCcEEEEeccCC--hhhh
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLFP------YCANVYDLAVNSDVLVVCCALT--EQTH  145 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~------~~~~l~el~~~aDiv~~~~p~t--~~t~  145 (223)
                      .+++|+++.|+|.|.+|++++..|...|+ +|.+++|+.++.....      ...++.++++++|+|+.++|..  +...
T Consensus       113 ~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~  192 (277)
T 3don_A          113 EGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTD  192 (277)
T ss_dssp             TTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------C
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCc
Confidence            35789999999999999999999999999 8999999876543211      2345667788999999999864  2222


Q ss_pred             hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          146 HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      ..++   .+.++++.+++++...+.. . .|+++.++..+.
T Consensus       193 ~~l~---~~~l~~~~~V~D~vY~P~~-T-~ll~~A~~~G~~  228 (277)
T 3don_A          193 SVIS---LNRLASHTLVSDIVYNPYK-T-PILIEAEQRGNP  228 (277)
T ss_dssp             CSSC---CTTCCSSCEEEESCCSSSS-C-HHHHHHHHTTCC
T ss_pred             CCCC---HHHcCCCCEEEEecCCCCC-C-HHHHHHHHCcCE
Confidence            2233   3557899999999877543 3 455555554443

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.63  E-value=8.9e-08  Score=87.01  Aligned_cols=100  Identities=12%  Similarity=0.079  Sum_probs=74.5

Q ss_pred             CCEEEEEecChHHHHHHHHHHhC-CC-EEEEEcCCCC----CCC--------------------------CcccccChhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAF-GF-IISYNSRRKR----PSV--------------------------LFPYCANVYD  126 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~-G~-~V~~~~~~~~----~~~--------------------------~~~~~~~l~e  126 (223)
                      -++|+|||+|.||..+|..|... |+ +|++||++++    ..+                          +...+.+-.+
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd~e   97 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDFS   97 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESCGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCcHH
Confidence            36899999999999999999999 99 9999999887    210                          0011122267


Q ss_pred             hhcCCcEEEEeccCCh--------hhhhcc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 035615          127 LAVNSDVLVVCCALTE--------QTHHII--NKDVMAELGKGGMIINVGRGALIDEKEMLQ  178 (223)
Q Consensus       127 l~~~aDiv~~~~p~t~--------~t~~li--~~~~l~~mk~ga~lIN~arg~~vd~~al~~  178 (223)
                      .+++||+|++++|...        +...+.  .+...+.+++|.++|+.|.-.+-..+.+.+
T Consensus        98 a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~  159 (478)
T 3g79_A           98 RISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAK  159 (478)
T ss_dssp             GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHH
T ss_pred             HHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHH
Confidence            7889999999998542        222222  245677899999999999877766666665

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.63  E-value=4.5e-08  Score=87.09  Aligned_cols=101  Identities=12%  Similarity=0.079  Sum_probs=75.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cc------------------ccccChhhhhcCCcEEEE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LF------------------PYCANVYDLAVNSDVLVV  136 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~------------------~~~~~l~el~~~aDiv~~  136 (223)
                      ++|+|||+|.||..+|..|.. |++|+++|++++...     +.                  ....+..+.++.+|+|++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            479999999999999999998 999999998764321     11                  123456778889999999


Q ss_pred             eccCCh----------hhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          137 CCALTE----------QTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       137 ~~p~t~----------~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      ++|...          .....+ +...+ ++++.++|+.+.-.+-..+.+.+.+.+.
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~  134 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD  134 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred             ecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC
Confidence            999653          244443 34555 8999999998877776677787777654

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.62  E-value=8.6e-08  Score=80.84  Aligned_cols=77  Identities=18%  Similarity=0.298  Sum_probs=66.2

Q ss_pred             cCCCEEEEEecCh-HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhc
Q 035615           77 LGGMQVGIVRLGN-IGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE  155 (223)
Q Consensus        77 l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~  155 (223)
                      ++|+++.|||.|. +|+.+|+.|...|++|+++++.         ..++++.+++||+|+.+++.    .+++.+++   
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~---------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~---  211 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK---------TKDIGSMTRSSKIVVVAVGR----PGFLNREM---  211 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSCHHHHHHHSSEEEECSSC----TTCBCGGG---
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC---------cccHHHhhccCCEEEECCCC----CccccHhh---
Confidence            8999999999986 7999999999999999998764         25789999999999999973    33677765   


Q ss_pred             CCCCcEEEEcCCCc
Q 035615          156 LGKGGMIINVGRGA  169 (223)
Q Consensus       156 mk~ga~lIN~arg~  169 (223)
                      +|+|+++||++.-.
T Consensus       212 vk~GavVIDvgi~~  225 (276)
T 3ngx_A          212 VTPGSVVIDVGINY  225 (276)
T ss_dssp             CCTTCEEEECCCEE
T ss_pred             ccCCcEEEEeccCc
Confidence            59999999999644

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.62  E-value=1.1e-07  Score=80.41  Aligned_cols=81  Identities=17%  Similarity=0.297  Sum_probs=68.4

Q ss_pred             cccCCCEEEEEecChH-HHHHHHHHHhC--CCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHH
Q 035615           75 FKLGGMQVGIVRLGNI-GSEVLNRLQAF--GFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~i-G~~~a~~l~~~--G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~  151 (223)
                      .+++|+++.|||.|.| |+.+|+.|...  |++|+.++++.         .++.+.+++||+|+.+++.    .++|.++
T Consensus       154 i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t---------~~L~~~~~~ADIVI~Avg~----p~~I~~~  220 (281)
T 2c2x_A          154 ISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT---------RDLPALTRQADIVVAAVGV----AHLLTAD  220 (281)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC---------SCHHHHHTTCSEEEECSCC----TTCBCGG
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch---------hHHHHHHhhCCEEEECCCC----CcccCHH
Confidence            4699999999999986 99999999998  89999887554         5789999999999999972    2357776


Q ss_pred             HHhcCCCCcEEEEcCCCccc
Q 035615          152 VMAELGKGGMIINVGRGALI  171 (223)
Q Consensus       152 ~l~~mk~ga~lIN~arg~~v  171 (223)
                      +   +|+|+++||+|.-.+-
T Consensus       221 ~---vk~GavVIDVgi~r~~  237 (281)
T 2c2x_A          221 M---VRPGAAVIDVGVSRTD  237 (281)
T ss_dssp             G---SCTTCEEEECCEEEET
T ss_pred             H---cCCCcEEEEccCCCCC
Confidence            6   4899999999976643

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.62  E-value=7.7e-08  Score=81.61  Aligned_cols=80  Identities=23%  Similarity=0.332  Sum_probs=67.7

Q ss_pred             cccCCCEEEEEecCh-HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           75 FKLGGMQVGIVRLGN-IGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      .+++|+++.|||.|. +|+.+|+.|...|++|..+++..         .++.+.+++||+|+.+++.    .+++..++ 
T Consensus       155 i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------~~L~~~~~~ADIVI~Avg~----p~lI~~~~-  220 (288)
T 1b0a_A          155 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------KNLRHHVENADLLIVAVGK----PGFIPGDW-  220 (288)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------SCHHHHHHHCSEEEECSCC----TTCBCTTT-
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHhccCCEEEECCCC----cCcCCHHH-
Confidence            468999999999997 59999999999999999887543         4789999999999999972    23677766 


Q ss_pred             hcCCCCcEEEEcCCCcc
Q 035615          154 AELGKGGMIINVGRGAL  170 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~  170 (223)
                        +|+|+++||+|.-.+
T Consensus       221 --vk~GavVIDVgi~r~  235 (288)
T 1b0a_A          221 --IKEGAIVIDVGINRL  235 (288)
T ss_dssp             --SCTTCEEEECCCEEC
T ss_pred             --cCCCcEEEEccCCcc
Confidence              499999999996543

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.62  E-value=1.5e-07  Score=79.75  Aligned_cols=79  Identities=22%  Similarity=0.339  Sum_probs=67.0

Q ss_pred             cccCCCEEEEEecCh-HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           75 FKLGGMQVGIVRLGN-IGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      .+++||++.|||.|. +|+.+|..|...|++|.+..+..         .++++.+++||+|+.+++.    .+++..++ 
T Consensus       157 i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T---------~~L~~~~~~ADIVI~Avg~----p~~I~~~~-  222 (286)
T 4a5o_A          157 ADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT---------RDLADHVSRADLVVVAAGK----PGLVKGEW-  222 (286)
T ss_dssp             CCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC---------SCHHHHHHTCSEEEECCCC----TTCBCGGG-
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC---------cCHHHHhccCCEEEECCCC----CCCCCHHH-
Confidence            468999999999987 79999999999999999887542         3788999999999999973    44677765 


Q ss_pred             hcCCCCcEEEEcCCCc
Q 035615          154 AELGKGGMIINVGRGA  169 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~  169 (223)
                        +|+|+++||++.-.
T Consensus       223 --vk~GavVIDvgi~~  236 (286)
T 4a5o_A          223 --IKEGAIVIDVGINR  236 (286)
T ss_dssp             --SCTTCEEEECCSCS
T ss_pred             --cCCCeEEEEecccc
Confidence              49999999999654

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.62  E-value=8.1e-09  Score=90.27  Aligned_cols=90  Identities=8%  Similarity=0.058  Sum_probs=68.0

Q ss_pred             EEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------------CcccccChhhhhcCCcEEEEeccCC
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------------LFPYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------------~~~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      +|+|||+|.||..+|..|...|++|.+|+|++...+                   ......+++++++.+|+|++++|. 
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~-   95 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT-   95 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence            899999999999999999999999999998753211                   112235677888999999999994 


Q ss_pred             hhhhhccCHH---HHhcCCC-CcEEEEcCCCccc
Q 035615          142 EQTHHIINKD---VMAELGK-GGMIINVGRGALI  171 (223)
Q Consensus       142 ~~t~~li~~~---~l~~mk~-ga~lIN~arg~~v  171 (223)
                      .....++...   ....+++ ++++|+++.|-..
T Consensus        96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            4555555321   4455677 8999999877443

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.61  E-value=3.1e-08  Score=86.84  Aligned_cols=92  Identities=13%  Similarity=0.176  Sum_probs=71.9

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCC-----ccc-------ccChhhhhcCCcEEEEeccCCh-
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVL-----FPY-------CANVYDLAVNSDVLVVCCALTE-  142 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~-----~~~-------~~~l~el~~~aDiv~~~~p~t~-  142 (223)
                      .+.+++|.|+|.|.+|+.+++.++.+|++|+++||++.+.+.     ...       ..++.+.++.+|+|+.+++... 
T Consensus       164 ~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~  243 (361)
T 1pjc_A          164 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  243 (361)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCC
Confidence            477899999999999999999999999999999998654321     111       1245567789999999986432 


Q ss_pred             hhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          143 QTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       143 ~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      .+..++.++.++.||++.+++|++-
T Consensus       244 ~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          244 RAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             CCCeecCHHHHhhCCCCCEEEEEec
Confidence            2345567888999999999999984

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.60  E-value=4.2e-08  Score=84.83  Aligned_cols=84  Identities=19%  Similarity=0.248  Sum_probs=65.0

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----C-----------cccccChhhhhcCCcEEEEeccCCh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----L-----------FPYCANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~-----------~~~~~~l~el~~~aDiv~~~~p~t~  142 (223)
                      ..+|+|||.|.||..+|..|...|++|.+|+|+++..+     +           .....+.++ ++.+|+|++++| +.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk-~~   91 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIP-VQ   91 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSC-GG
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECC-HH
Confidence            57899999999999999999999999999999754321     1           233456778 889999999999 35


Q ss_pred             hhhhccCHHHHhcCC-CCcEEEEcCCCc
Q 035615          143 QTHHIINKDVMAELG-KGGMIINVGRGA  169 (223)
Q Consensus       143 ~t~~li~~~~l~~mk-~ga~lIN~arg~  169 (223)
                      .++.++.     .++ ++.++|+++.|-
T Consensus        92 ~~~~v~~-----~l~~~~~~vv~~~nGi  114 (335)
T 1z82_A           92 YIREHLL-----RLPVKPSMVLNLSKGI  114 (335)
T ss_dssp             GHHHHHT-----TCSSCCSEEEECCCCC
T ss_pred             HHHHHHH-----HhCcCCCEEEEEeCCC
Confidence            5555442     333 789999999773

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.60  E-value=2.1e-07  Score=79.38  Aligned_cols=82  Identities=16%  Similarity=0.278  Sum_probs=68.4

Q ss_pred             ccccCCCEEEEEecCh-HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRLGN-IGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.+++|+++.|||.|+ +|+.+|+.|...|++|.++++.         ..++.+.+++||+|+.+++.    .++|..++
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~---------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~  226 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK---------TAHLDEEVNKGDILVVATGQ----PEMVKGEW  226 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSSHHHHHTTCSEEEECCCC----TTCBCGGG
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC---------cccHHHHhccCCEEEECCCC----cccCCHHH
Confidence            3478999999999996 6999999999999999988754         25789999999999999974    33677766


Q ss_pred             HhcCCCCcEEEEcCCCccc
Q 035615          153 MAELGKGGMIINVGRGALI  171 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~v  171 (223)
                         +|+|+++||+|.-.+-
T Consensus       227 ---vk~GavVIDVgi~~~~  242 (301)
T 1a4i_A          227 ---IKPGAIVIDCGINYVP  242 (301)
T ss_dssp             ---SCTTCEEEECCCBC--
T ss_pred             ---cCCCcEEEEccCCCcc
Confidence               5899999999986644

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.59  E-value=5.2e-08  Score=88.63  Aligned_cols=102  Identities=7%  Similarity=0.112  Sum_probs=75.8

Q ss_pred             CEEEEEecChHHHHHHHHHHhC--CCEEEEEcCCCCCCC------------C------------cccccChhhhhcCCcE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF--GFIISYNSRRKRPSV------------L------------FPYCANVYDLAVNSDV  133 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~~~~~------------~------------~~~~~~l~el~~~aDi  133 (223)
                      ++|+|||+|.||..+|..|...  |++|+++|++++..+            +            .....++.+.++.||+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv   89 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL   89 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence            5899999999999999999876  799999998754211            0            1123456677889999


Q ss_pred             EEEeccCChh--------------hhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 035615          134 LVVCCALTEQ--------------THHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQ  182 (223)
Q Consensus       134 v~~~~p~t~~--------------t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~  182 (223)
                      |++|+|....              ....+ +...+.++++.++|+.|.-.+-..+.+.+.+++
T Consensus        90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~-~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~  151 (481)
T 2o3j_A           90 IFISVNTPTKMYGRGKGMAPDLKYVESVS-RTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE  151 (481)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEecCCccccccccccCCCcHHHHHHHH-HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence            9999985321              22222 455677899999999887666666778888876

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=98.59  E-value=5.3e-08  Score=80.48  Aligned_cols=70  Identities=16%  Similarity=0.253  Sum_probs=57.7

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGK  158 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~  158 (223)
                      -++|||||+|.||.++|+.|+..|++|.+|++.             ++ ++.||  ++++|.. ....++ ++....+++
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~-------------~~-~~~aD--ilavP~~-ai~~vl-~~l~~~l~~   67 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP-------------ED-IRDFE--LVVIDAH-GVEGYV-EKLSAFARR   67 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG-------------GG-GGGCS--EEEECSS-CHHHHH-HHHHTTCCT
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH-------------HH-hccCC--EEEEcHH-HHHHHH-HHHHHhcCC
Confidence            468999999999999999999999999999873             23 57799  7889965 556655 456667899


Q ss_pred             CcEEEEcC
Q 035615          159 GGMIINVG  166 (223)
Q Consensus       159 ga~lIN~a  166 (223)
                      ++++++++
T Consensus        68 g~ivvd~s   75 (232)
T 3dfu_A           68 GQMFLHTS   75 (232)
T ss_dssp             TCEEEECC
T ss_pred             CCEEEEEC
Confidence            99999975

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.58  E-value=1.2e-07  Score=81.88  Aligned_cols=90  Identities=14%  Similarity=0.126  Sum_probs=69.6

Q ss_pred             ccccCCCEEEEEecChH-HHHHHHHHHhCCCEEEEEcCCCCC----CC----Ccccc--------cChhhhhcCCcEEEE
Q 035615           74 GFKLGGMQVGIVRLGNI-GSEVLNRLQAFGFIISYNSRRKRP----SV----LFPYC--------ANVYDLAVNSDVLVV  136 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~----~~----~~~~~--------~~l~el~~~aDiv~~  136 (223)
                      +.++.|+++.|||.|.| |+.+|+.|.+.|++|.+++|+...    ..    .....        .++++.++++|+|+.
T Consensus       172 g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIs  251 (320)
T 1edz_A          172 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVIT  251 (320)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEE
Confidence            45799999999999986 999999999999999999886211    11    11111        568899999999999


Q ss_pred             eccCChhhhhccCHHHHhcCCCCcEEEEcCCCc
Q 035615          137 CCALTEQTHHIINKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       137 ~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~  169 (223)
                      +++..   ..+|..++   +|+|+++||+|.-.
T Consensus       252 Atg~p---~~vI~~e~---vk~GavVIDVgi~r  278 (320)
T 1edz_A          252 GVPSE---NYKFPTEY---IKEGAVCINFACTK  278 (320)
T ss_dssp             CCCCT---TCCBCTTT---SCTTEEEEECSSSC
T ss_pred             CCCCC---cceeCHHH---cCCCeEEEEcCCCc
Confidence            98732   23477765   48999999998764

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.57  E-value=1.2e-07  Score=81.04  Aligned_cols=106  Identities=11%  Similarity=0.103  Sum_probs=75.9

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC------Cc---c--cccChhhhhcCCcEEEEeccCChh
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV------LF---P--YCANVYDLAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~~---~--~~~~l~el~~~aDiv~~~~p~t~~  143 (223)
                      ++.+++++|+|.|.+|+.++..|...|+ +|.+++|+.++.+      +.   .  ...++.+.+.++|+|+.++|....
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~  217 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMH  217 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCS
T ss_pred             CCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCC
Confidence            5789999999999999999999999998 8999999864321      11   1  113456778899999999986532


Q ss_pred             h--hh-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          144 T--HH-IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       144 t--~~-li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      .  .. .++   ...++++.+++|++-.+. .. .|.+..++..+.
T Consensus       218 ~~~~~~~i~---~~~l~~~~~v~D~~y~P~-~T-~ll~~A~~~G~~  258 (297)
T 2egg_A          218 PRVEVQPLS---LERLRPGVIVSDIIYNPL-ET-KWLKEAKARGAR  258 (297)
T ss_dssp             SCCSCCSSC---CTTCCTTCEEEECCCSSS-SC-HHHHHHHHTTCE
T ss_pred             CCCCCCCCC---HHHcCCCCEEEEcCCCCC-CC-HHHHHHHHCcCE
Confidence            1  11 233   245789999999998543 33 366666665554

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.56  E-value=5.3e-08  Score=88.19  Aligned_cols=111  Identities=12%  Similarity=0.154  Sum_probs=75.7

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCC---------------------------cccccChhhhhcCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVL---------------------------FPYCANVYDLAVNS  131 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~---------------------------~~~~~~l~el~~~a  131 (223)
                      -++|+|||.|.||..+|..+...|++|+++|++++....                           .....++ +.+++|
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            468999999999999999999999999999987642110                           0112355 567899


Q ss_pred             cEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCC
Q 035615          132 DVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVF  193 (223)
Q Consensus       132 Div~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~  193 (223)
                      |+|+.++|...+...-+-++..+.++++++|+... .+ +....|.+.+... -...++..|
T Consensus       116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snT-s~-~~~~~la~~~~~~-~~~ig~hf~  174 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNT-SA-LNVDDIASSTDRP-QLVIGTHFF  174 (463)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECC-SS-SCHHHHHTTSSCG-GGEEEEEEC
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCC-CC-cCHHHHHHHhcCC-cceEEeecC
Confidence            99999999765443333345666789999998633 33 2334666655432 223466666

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.55  E-value=1.1e-07  Score=79.67  Aligned_cols=100  Identities=14%  Similarity=0.106  Sum_probs=74.9

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCCc------ccccChhhhhcCCcEEEEeccCC--hhhhh
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLF------PYCANVYDLAVNSDVLVVCCALT--EQTHH  146 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~------~~~~~l~el~~~aDiv~~~~p~t--~~t~~  146 (223)
                      .++| +++|||.|.+|++++..|...|+ +|.+++|+.++.+..      ....++.+.++++|+|++++|..  ++ ..
T Consensus       106 ~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~-~~  183 (253)
T 3u62_A          106 EVKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGE-EL  183 (253)
T ss_dssp             CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSC-CC
T ss_pred             CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCC-CC
Confidence            3678 99999999999999999999999 799999987543211      12456778889999999999854  22 22


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          147 IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       147 li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      .++.+.   ++++.+++++.-+   ...-|.++.+.|
T Consensus       184 ~i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          184 PVSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             SCCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             CCCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            344443   5789999999988   555555666555

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.55  E-value=1.1e-07  Score=85.25  Aligned_cols=105  Identities=15%  Similarity=0.145  Sum_probs=74.3

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----Cc--ccccChhhh---------------hcCCcEEE
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LF--PYCANVYDL---------------AVNSDVLV  135 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~--~~~~~l~el---------------~~~aDiv~  135 (223)
                      -.|.++.|||+|.||..+|..|...|++|++||+++++.+    +.  .....++|+               +++||+|+
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi   88 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI   88 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence            4689999999999999999999999999999999875422    10  001112222               45799999


Q ss_pred             EeccCChhh--------hhcc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 035615          136 VCCALTEQT--------HHII--NKDVMAELGKGGMIINVGRGALIDEKEMLQFLV  181 (223)
Q Consensus       136 ~~~p~t~~t--------~~li--~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~  181 (223)
                      +|+|.....        ..+.  .+...+.|++|.++|+.|.-.+-..+.+.+.+.
T Consensus        89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~  144 (431)
T 3ojo_A           89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVI  144 (431)
T ss_dssp             ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHH
T ss_pred             EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHH
Confidence            999954321        1222  245677899999999999888877777777643

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.49  E-value=1.7e-07  Score=79.05  Aligned_cols=104  Identities=15%  Similarity=0.151  Sum_probs=74.5

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc----ccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF----PYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA  154 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~----~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~  154 (223)
                      ++++.|+|.|.+|++++..|...|.+|.+++|+.++.+..    ....+++++ .++|+|+.++|..-.....++.+.+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~~~~~l-~~~DiVInaTp~Gm~~~~~l~~~~l~  196 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPK-SAFDLIINATSASLHNELPLNKEVLK  196 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEESSCCS-SCCSEEEECCTTCCCCSCSSCHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEecHHHh-ccCCEEEEcccCCCCCCCCCChHHHH
Confidence            8999999999999999999999999999999998754321    111234443 38999999999653322346665333


Q ss_pred             -cCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          155 -ELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       155 -~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                       .++++.+++|+...+  ... |+++.++..+.
T Consensus       197 ~~l~~~~~v~D~vY~P--~T~-ll~~A~~~G~~  226 (269)
T 3phh_A          197 GYFKEGKLAYDLAYGF--LTP-FLSLAKELKTP  226 (269)
T ss_dssp             HHHHHCSEEEESCCSS--CCH-HHHHHHHTTCC
T ss_pred             hhCCCCCEEEEeCCCC--chH-HHHHHHHCcCE
Confidence             578899999999987  444 55555444443

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.44  E-value=7.5e-08  Score=91.56  Aligned_cols=112  Identities=13%  Similarity=0.085  Sum_probs=77.6

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------Cc-------------ccccChhhhhc
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------LF-------------PYCANVYDLAV  129 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~~-------------~~~~~l~el~~  129 (223)
                      =++|||||.|.||..+|..+...|++|++||++++...                +.             ....++ +.++
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  392 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG  392 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence            35799999999999999999999999999999864321                10             112345 6688


Q ss_pred             CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615          130 NSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE  194 (223)
Q Consensus       130 ~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~  194 (223)
                      +||+|+.++|...+.+..+-++..+.++++++|+..+.+  +....+.+.+.. .-...++..|.
T Consensus       393 ~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~-~~~~ig~hf~~  454 (715)
T 1wdk_A          393 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST--ISISLLAKALKR-PENFVGMHFFN  454 (715)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHGGGCSC-GGGEEEEECCS
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--CCHHHHHHHhcC-ccceEEEEccC
Confidence            999999999987765544435666778999998744333  333455555532 12335666665

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.37  E-value=1.9e-07  Score=88.83  Aligned_cols=111  Identities=13%  Similarity=0.061  Sum_probs=76.1

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhcC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAVN  130 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~  130 (223)
                      ++|+|||.|.||..+|..+...|++|++||++++...                +             .....++ +.+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  391 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD  391 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence            6799999999999999999999999999998764211                1             0112445 56889


Q ss_pred             CcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615          131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE  194 (223)
Q Consensus       131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~  194 (223)
                      ||+|+.++|...+.+.-+-++..+.++++++|+..+.+  +....+.+.++.. -...+.+.|.
T Consensus       392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~p-~~~iG~hf~~  452 (725)
T 2wtb_A          392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST--IDLNKIGERTKSQ-DRIVGAHFFS  452 (725)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHTTTCSCT-TTEEEEEECS
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHHhcCC-CCEEEecCCC
Confidence            99999999977665444435666778999988644333  3334555555321 1234666665

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.37  E-value=1.7e-06  Score=65.89  Aligned_cols=102  Identities=18%  Similarity=0.143  Sum_probs=75.2

Q ss_pred             CCCEEEEEec----ChHHHHHHHHHHhCCCEEEEEcCC--CCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHH
Q 035615           78 GGMQVGIVRL----GNIGSEVLNRLQAFGFIISYNSRR--KRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        78 ~g~~vgIiG~----G~iG~~~a~~l~~~G~~V~~~~~~--~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~  151 (223)
                      +-++|+|||.    |++|..+++.|+..|++|+..++.  .....+...+.+++|+-...|++++++|. +....+++ +
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~~-~   89 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPP-SALMDHLP-E   89 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHH-H
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHHH-H
Confidence            4678999999    899999999999999997777766  33334555677899998899999999995 55666663 3


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      ..+ .....++++.+-.    ++.+.+..++..+.
T Consensus        90 ~~~-~gi~~i~~~~g~~----~~~~~~~a~~~Gir  119 (140)
T 1iuk_A           90 VLA-LRPGLVWLQSGIR----HPEFEKALKEAGIP  119 (140)
T ss_dssp             HHH-HCCSCEEECTTCC----CHHHHHHHHHTTCC
T ss_pred             HHH-cCCCEEEEcCCcC----HHHHHHHHHHcCCE
Confidence            443 3334566554332    57788888877776

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.36  E-value=4.3e-07  Score=81.03  Aligned_cols=91  Identities=20%  Similarity=0.243  Sum_probs=70.0

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCC---C--------CCCcccccChhhhhcCCcEEEEeccCChh
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKR---P--------SVLFPYCANVYDLAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~---~--------~~~~~~~~~l~el~~~aDiv~~~~p~t~~  143 (223)
                      .-|+||||+|||+|+-|++-|..|+..|.+|++--|...   .        ..++ ...+.+|++++||+|++.+|...+
T Consensus        33 ~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf-~v~~~~eA~~~ADvV~~L~PD~~q  111 (491)
T 3ulk_A           33 SYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF-KVGTYEELIPQADLVINLTPDKQH  111 (491)
T ss_dssp             GGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTC-EEEEHHHHGGGCSEEEECSCGGGH
T ss_pred             HHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCC-EecCHHHHHHhCCEEEEeCChhhH
Confidence            348999999999999999999999999999876544211   1        1133 346789999999999999996544


Q ss_pred             hhhccCHHHHhcCCCCcEEEEcCCCc
Q 035615          144 THHIINKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga~lIN~arg~  169 (223)
                      . .+. ++....||+|+.|. .|.|=
T Consensus       112 ~-~vy-~~I~p~lk~G~~L~-faHGF  134 (491)
T 3ulk_A          112 S-DVV-RTVQPLMKDGAALG-YSHGF  134 (491)
T ss_dssp             H-HHH-HHHGGGSCTTCEEE-ESSCH
T ss_pred             H-HHH-HHHHhhCCCCCEEE-ecCcc
Confidence            3 344 46899999999877 55554

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=98.35  E-value=4.1e-08  Score=82.73  Aligned_cols=83  Identities=14%  Similarity=0.029  Sum_probs=55.1

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEE-EEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFII-SYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V-~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      ++|||||+|+||+.+++.|... ++| .+|+|++....      +. ...+++++++++|+|++++|... ..     +.
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~-~~-----~v   74 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRY-IK-----TV   74 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTT-HH-----HH
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHH-HH-----HH
Confidence            4799999999999999999877 888 58998764321      22 34577788889999999999543 23     33


Q ss_pred             HhcC-CCCcEEEEcCCCcc
Q 035615          153 MAEL-GKGGMIINVGRGAL  170 (223)
Q Consensus       153 l~~m-k~ga~lIN~arg~~  170 (223)
                      +..+ +++.++||++-+-.
T Consensus        75 ~~~l~~~~~ivi~~s~~~~   93 (276)
T 2i76_A           75 ANHLNLGDAVLVHCSGFLS   93 (276)
T ss_dssp             HTTTCCSSCCEEECCSSSC
T ss_pred             HHHhccCCCEEEECCCCCc
Confidence            3333 67899999985533

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=98.35  E-value=1.6e-07  Score=79.95  Aligned_cols=101  Identities=14%  Similarity=0.171  Sum_probs=69.0

Q ss_pred             CEEEEEecChHHHHHHHHHHhC-----C-CEEEEEcCCCCCC------CCcccc-------------cChhhhhcCCcEE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF-----G-FIISYNSRRKRPS------VLFPYC-------------ANVYDLAVNSDVL  134 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~-----G-~~V~~~~~~~~~~------~~~~~~-------------~~l~el~~~aDiv  134 (223)
                      ++|+|||+|.||..+|..|...     | ++|.+++| ++..      .+....             .+..+.+..+|+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   87 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI   87 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence            5899999999999999999988     8 99999998 4321      111111             1233557899999


Q ss_pred             EEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 035615          135 VVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGD  184 (223)
Q Consensus       135 ~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~  184 (223)
                      ++++|... +..++ ++....++++.++|.+..| +-.++.+.+.+.+.+
T Consensus        88 il~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~~~~  134 (317)
T 2qyt_A           88 LFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG-ADIAERMRTYLPDTV  134 (317)
T ss_dssp             EECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS-SSHHHHHTTTSCTTT
T ss_pred             EEecCccc-HHHHH-HHHHhhcCCCCEEEEccCC-CCcHHHHHHHCCCCc
Confidence            99999553 44444 3444567788999998776 222355555554433

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.35  E-value=2.5e-06  Score=65.20  Aligned_cols=101  Identities=10%  Similarity=0.068  Sum_probs=74.6

Q ss_pred             CCEEEEEec----ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615           79 GMQVGIVRL----GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA  154 (223)
Q Consensus        79 g~~vgIiG~----G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~  154 (223)
                      -++|+|||.    |++|..+++.|+..|++|+..++......+...+.+++|+....|++++++|. +....++. +..+
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv~-~~~~   99 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE-QAIK   99 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH-HHHH
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHH-HHHH
Confidence            689999999    79999999999999999877777654334555677899998899999999985 45555553 3333


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       155 ~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                       .....++++.  |.  .++.+.+..++..+.
T Consensus       100 -~gi~~i~~~~--g~--~~~~l~~~a~~~Gi~  126 (144)
T 2d59_A          100 -KGAKVVWFQY--NT--YNREASKKADEAGLI  126 (144)
T ss_dssp             -HTCSEEEECT--TC--CCHHHHHHHHHTTCE
T ss_pred             -cCCCEEEECC--Cc--hHHHHHHHHHHcCCE
Confidence             2334555543  22  367788888887776

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.34  E-value=2.2e-06  Score=65.66  Aligned_cols=95  Identities=12%  Similarity=-0.021  Sum_probs=62.5

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------Cccc----ccC---hhhh-hcCCcEEEEecc
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFPY----CAN---VYDL-AVNSDVLVVCCA  139 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~----~~~---l~el-~~~aDiv~~~~p  139 (223)
                      +....+++|.|+|+|.+|+.+++.|+..|++|+++++++....      +...    ..+   +.+. +..+|+|++++|
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~   93 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTN   93 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSS
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeC
Confidence            4557789999999999999999999999999999998765322      1111    111   2233 567999999998


Q ss_pred             CChhhhhccCHHHHhcCCCCcEEEEcCCCcc
Q 035615          140 LTEQTHHIINKDVMAELGKGGMIINVGRGAL  170 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~mk~ga~lIN~arg~~  170 (223)
                      ....+..+  ....+.+.+...+|-..++.-
T Consensus        94 ~~~~~~~~--~~~~~~~~~~~~iv~~~~~~~  122 (155)
T 2g1u_A           94 DDSTNFFI--SMNARYMFNVENVIARVYDPE  122 (155)
T ss_dssp             CHHHHHHH--HHHHHHTSCCSEEEEECSSGG
T ss_pred             CcHHHHHH--HHHHHHHCCCCeEEEEECCHH
Confidence            54333222  234444555566666666553

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.34  E-value=2.9e-07  Score=72.45  Aligned_cols=90  Identities=16%  Similarity=0.182  Sum_probs=63.6

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhC-CCEEEEEcCCCCCCC-----Cccc----ccC---hhhh--hcCCcEEEEecc
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAF-GFIISYNSRRKRPSV-----LFPY----CAN---VYDL--AVNSDVLVVCCA  139 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~-----~~~~----~~~---l~el--~~~aDiv~~~~p  139 (223)
                      .++.+++|+|+|+|.+|+.+++.|+.. |++|++++++++...     +...    ..+   +.++  +.++|+|++++|
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~  114 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMP  114 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence            457788999999999999999999998 999999998765321     2211    112   3444  678999999998


Q ss_pred             CChhhhhccCHHHHhcCCCCcEEEEcC
Q 035615          140 LTEQTHHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      ..+.+..++  ..++.+.+...+|...
T Consensus       115 ~~~~~~~~~--~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          115 HHQGNQTAL--EQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             SHHHHHHHH--HHHHHTTCCSEEEEEE
T ss_pred             ChHHHHHHH--HHHHHHCCCCEEEEEE
Confidence            655444443  3556666666666543

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.29  E-value=4.6e-06  Score=71.53  Aligned_cols=104  Identities=15%  Similarity=0.168  Sum_probs=74.2

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC---CC---------------cccccChhhhhcCCcEEEEeccCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS---VL---------------FPYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---~~---------------~~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      ++|+|||.|.||..+|..|...|.+|.+++|+....   .+               .....+.+++.+.+|+|++++|..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~~   82 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDYETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKVV   82 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTHHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChHHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCCC
Confidence            689999999999999999999999999999875210   01               111245667666899999999955


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                       .+...+ ++....+++++++|.+..|= -.++.+.+.+...++.
T Consensus        83 -~~~~~l-~~l~~~l~~~t~Iv~~~nGi-~~~~~l~~~~~~~~vl  124 (320)
T 3i83_A           83 -EGADRV-GLLRDAVAPDTGIVLISNGI-DIEPEVAAAFPDNEVI  124 (320)
T ss_dssp             -TTCCHH-HHHTTSCCTTCEEEEECSSS-SCSHHHHHHSTTSCEE
T ss_pred             -ChHHHH-HHHHhhcCCCCEEEEeCCCC-ChHHHHHHHCCCCcEE
Confidence             334433 34455678889999888763 2346677777655554

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.29  E-value=5.6e-07  Score=77.83  Aligned_cols=105  Identities=15%  Similarity=0.157  Sum_probs=74.3

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCc-------------ccccChhhhhcCCcEEEEeccCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLF-------------PYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~-------------~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      .++|+|||.|.||..+|..|...|.+|.+++|.....    .+.             ....+.++ ++.+|+|++++|. 
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~-   80 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA-   80 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc-
Confidence            4689999999999999999999999999999852110    111             11245666 5889999999984 


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcCCCc------------------ccCHHHHHHHHHcCCce
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVGRGA------------------LIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~arg~------------------~vd~~al~~aL~~~~i~  186 (223)
                      ..+..++ ++....+++++++|.+..|=                  +-.++.+.+.+...++.
T Consensus        81 ~~~~~~~-~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~  142 (335)
T 3ghy_A           81 PALESVA-AGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVL  142 (335)
T ss_dssp             HHHHHHH-GGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEE
T ss_pred             hhHHHHH-HHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEE
Confidence            4555554 23445577899999999882                  22345677777555554

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=98.28  E-value=7e-07  Score=76.75  Aligned_cols=101  Identities=17%  Similarity=0.238  Sum_probs=68.8

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----C-------------cccccChhhhhcCCcEEEEe
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----L-------------FPYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~-------------~~~~~~l~el~~~aDiv~~~  137 (223)
                      ....++|+|||.|.||..+|..|...|.+|.+| ++++..+     +             .....++++ ++.+|+|+++
T Consensus        16 ~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vila   93 (318)
T 3hwr_A           16 YFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFC   93 (318)
T ss_dssp             ----CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEEC
T ss_pred             hccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEE
Confidence            355789999999999999999999999999998 5543211     1             011234544 5899999999


Q ss_pred             ccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 035615          138 CALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLV  181 (223)
Q Consensus       138 ~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~  181 (223)
                      +|.. .++.++ ++....+++++++|.+..|=-. ++.+.+.+.
T Consensus        94 vk~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi~~-~~~l~~~~~  134 (318)
T 3hwr_A           94 VKST-DTQSAA-LAMKPALAKSALVLSLQNGVEN-ADTLRSLLE  134 (318)
T ss_dssp             CCGG-GHHHHH-HHHTTTSCTTCEEEEECSSSSH-HHHHHHHCC
T ss_pred             cccc-cHHHHH-HHHHHhcCCCCEEEEeCCCCCc-HHHHHHHcC
Confidence            9954 555554 3455567889999998777322 345556554

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.24  E-value=3.6e-06  Score=72.41  Aligned_cols=82  Identities=20%  Similarity=0.287  Sum_probs=64.2

Q ss_pred             CCEEEEEecChHHHHHHHHHHh-CCC-EEEEEcCCCCCCC---------Cc--ccccChhhhhcCCcEEEEeccCChhhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQA-FGF-IISYNSRRKRPSV---------LF--PYCANVYDLAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~---------~~--~~~~~l~el~~~aDiv~~~~p~t~~t~  145 (223)
                      .++++|||.|.+|+.+++.+.. ++. +|.+|||+ +...         +.  ... +++++++++|+|++|+|..   .
T Consensus       121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~---~  195 (313)
T 3hdj_A          121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRST---T  195 (313)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCS---S
T ss_pred             CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCC---C
Confidence            6899999999999999999875 454 69999999 3221         11  123 8899999999999999864   4


Q ss_pred             hccCHHHHhcCCCCcEEEEcCCC
Q 035615          146 HIINKDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~arg  168 (223)
                      .++..   +.+|+|+.+++++..
T Consensus       196 pvl~~---~~l~~G~~V~~vGs~  215 (313)
T 3hdj_A          196 PLFAG---QALRAGAFVGAIGSS  215 (313)
T ss_dssp             CSSCG---GGCCTTCEEEECCCS
T ss_pred             cccCH---HHcCCCcEEEECCCC
Confidence            56654   357999999999864

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.24  E-value=2e-06  Score=63.95  Aligned_cols=85  Identities=18%  Similarity=0.197  Sum_probs=56.9

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------Cccc----ccChh---hh-hcCCcEEEEeccCChhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFPY----CANVY---DL-AVNSDVLVVCCALTEQT  144 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~----~~~l~---el-~~~aDiv~~~~p~t~~t  144 (223)
                      +++|+|+|+|.+|+.+++.|...|++|.+++++++...      +...    ..+.+   +. +.++|+|++++|.....
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~   83 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN   83 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence            57899999999999999999999999999998754321      2111    11222   22 57899999999854332


Q ss_pred             hhccCHHHHhcCCCCcEEEEc
Q 035615          145 HHIINKDVMAELGKGGMIINV  165 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~  165 (223)
                      ..+  ....+.++++.+++-+
T Consensus        84 ~~~--~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           84 LMS--SLLAKSYGINKTIARI  102 (140)
T ss_dssp             HHH--HHHHHHTTCCCEEEEC
T ss_pred             HHH--HHHHHHcCCCEEEEEe
Confidence            222  3345567777666543

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=98.22  E-value=5.2e-06  Score=70.94  Aligned_cols=105  Identities=16%  Similarity=0.126  Sum_probs=72.8

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC---CCc--------------ccccChhhhhcCCcEEEEeccCCh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS---VLF--------------PYCANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---~~~--------------~~~~~l~el~~~aDiv~~~~p~t~  142 (223)
                      ++|+|||.|.||..+|..|...|.+|.+++|+....   .+.              ....+.++ ++.+|+|++++|.. 
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~~-   80 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRDYEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKTF-   80 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTTHHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCGG-
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCcHHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCCC-
Confidence            579999999999999999999999999999875210   010              01234444 67899999999844 


Q ss_pred             hhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEE
Q 035615          143 QTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGV  188 (223)
Q Consensus       143 ~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a  188 (223)
                      .++..+ ++.-..+++++++|.+..|= -.++.+.+.+...++.+.
T Consensus        81 ~~~~~l-~~l~~~l~~~~~iv~l~nGi-~~~~~l~~~~~~~~v~~~  124 (312)
T 3hn2_A           81 ANSRYE-ELIRPLVEEGTQILTLQNGL-GNEEALATLFGAERIIGG  124 (312)
T ss_dssp             GGGGHH-HHHGGGCCTTCEEEECCSSS-SHHHHHHHHTCGGGEEEE
T ss_pred             CcHHHH-HHHHhhcCCCCEEEEecCCC-CcHHHHHHHCCCCcEEEE
Confidence            344443 34455678899999988772 235667777765555443

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.21  E-value=7.8e-06  Score=72.03  Aligned_cols=92  Identities=11%  Similarity=0.181  Sum_probs=74.4

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC----CCCC----C-----------CcccccChhhhhcCCcE
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR----KRPS----V-----------LFPYCANVYDLAVNSDV  133 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~----~~~~----~-----------~~~~~~~l~el~~~aDi  133 (223)
                      +..+++.+|.|+|.|.+|..+|+.+.+.|. +|+.+|++    ....    .           ......+|+|.++.+|+
T Consensus       187 g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADV  266 (388)
T 1vl6_A          187 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADF  266 (388)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSE
T ss_pred             CCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCE
Confidence            346889999999999999999999999999 79999987    3321    1           01124579999999999


Q ss_pred             EEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcc
Q 035615          134 LVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGAL  170 (223)
Q Consensus       134 v~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~  170 (223)
                      ++-+.  .   -++|+++.++.|+++.+++.+|+-..
T Consensus       267 lIG~S--a---p~l~t~emVk~Ma~~pIIfalSNPt~  298 (388)
T 1vl6_A          267 FIGVS--R---GNILKPEWIKKMSRKPVIFALANPVP  298 (388)
T ss_dssp             EEECS--C---SSCSCHHHHTTSCSSCEEEECCSSSC
T ss_pred             EEEeC--C---CCccCHHHHHhcCCCCEEEEcCCCCC
Confidence            87763  1   38999999999999999999997553

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=98.20  E-value=1.3e-06  Score=77.34  Aligned_cols=83  Identities=18%  Similarity=0.238  Sum_probs=68.7

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHHhCCC---EEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           78 GGMQVGIVRL-GNIGSEVLNRLQAFGF---IISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        78 ~g~~vgIiG~-G~iG~~~a~~l~~~G~---~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      ...+|.|||. |..|+..++.++++|+   .|..+|++.... +..    + +.+.++|+|+.++......-.+|+++.+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~-g~~----~-~~i~~aDivIn~vlig~~aP~Lvt~e~v  286 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR-GGP----F-DEIPQADIFINCIYLSKPIAPFTNMEKL  286 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT-CSC----C-THHHHSSEEEECCCCCSSCCCSCCHHHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc-CCc----h-hhHhhCCEEEECcCcCCCCCcccCHHHH
Confidence            3568999999 9999999999999998   899999865222 111    2 3456899999999986666688999999


Q ss_pred             hcC-CCCcEEEEcC
Q 035615          154 AEL-GKGGMIINVG  166 (223)
Q Consensus       154 ~~m-k~ga~lIN~a  166 (223)
                      +.| |||++|||++
T Consensus       287 ~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          287 NNPNRRLRTVVDVS  300 (394)
T ss_dssp             CCTTCCCCEEEETT
T ss_pred             hcCcCCCeEEEEEe
Confidence            999 9999999997

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.20  E-value=2.9e-06  Score=74.09  Aligned_cols=87  Identities=14%  Similarity=0.092  Sum_probs=65.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHH-hCC-CEEEEEcCCCCCCC----------C--cccccChhhhhcCCcEEEEeccCChh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQ-AFG-FIISYNSRRKRPSV----------L--FPYCANVYDLAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~-~~G-~~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDiv~~~~p~t~~  143 (223)
                      ..++++|||.|.+|+.+++.+. ..+ .+|.+|||++++.+          +  ...+.+++++++++|+|++++|.. .
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~-~  206 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK-A  206 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS-S
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCC-C
Confidence            3679999999999999998875 344 47999999865421          2  223568899999999999999965 2


Q ss_pred             hhhccCHHHHhcCCCCcEEEEcCCC
Q 035615          144 THHIINKDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga~lIN~arg  168 (223)
                      ...++..   +.+++|..+++++..
T Consensus       207 ~~pvl~~---~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          207 YATIITP---DMLEPGMHLNAVGGD  228 (350)
T ss_dssp             EEEEECG---GGCCTTCEEEECSCC
T ss_pred             CCceecH---HHcCCCCEEEECCCC
Confidence            3445554   457899999999864

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.19  E-value=1.6e-06  Score=62.53  Aligned_cols=84  Identities=13%  Similarity=0.107  Sum_probs=57.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCC-CEEEEEcCCCCCCC-----Cc-------ccccChhhhhcCCcEEEEeccCChhh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFG-FIISYNSRRKRPSV-----LF-------PYCANVYDLAVNSDVLVVCCALTEQT  144 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~-----~~-------~~~~~l~el~~~aDiv~~~~p~t~~t  144 (223)
                      .+++|+|+|.|.||+.+++.|...| ++|.+++|++....     +.       ....++.++++.+|+|+.++|... +
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~-~   82 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL-T   82 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG-H
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh-h
Confidence            4689999999999999999999999 89999998764321     11       112345567889999999987432 2


Q ss_pred             hhccCHHHHhcCCCCcEEEEcC
Q 035615          145 HHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      ..++.    ...+.|...++++
T Consensus        83 ~~~~~----~~~~~g~~~~~~~  100 (118)
T 3ic5_A           83 PIIAK----AAKAAGAHYFDLT  100 (118)
T ss_dssp             HHHHH----HHHHTTCEEECCC
T ss_pred             HHHHH----HHHHhCCCEEEec
Confidence            22211    1124566677765

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.19  E-value=1e-06  Score=66.50  Aligned_cols=85  Identities=14%  Similarity=0.012  Sum_probs=58.8

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc----ccC---hhhh-hcCCcEEEEeccCChhhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY----CAN---VYDL-AVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~----~~~---l~el-~~~aDiv~~~~p~t~~t~  145 (223)
                      ..++.|+|+|.+|+.+++.|+..|++|++++++++...     +...    ..+   +.++ +.++|+|++++|....+.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~   86 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAG   86 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHH
Confidence            45799999999999999999999999999998875421     2211    111   2222 568999999999665554


Q ss_pred             hccCHHHHhcCCCCcEEEEc
Q 035615          146 HIINKDVMAELGKGGMIINV  165 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~  165 (223)
                      .++  ..++.+.++..+|-.
T Consensus        87 ~~~--~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           87 EIV--ASARAKNPDIEIIAR  104 (140)
T ss_dssp             HHH--HHHHHHCSSSEEEEE
T ss_pred             HHH--HHHHHHCCCCeEEEE
Confidence            442  345556666666643

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=98.15  E-value=2e-06  Score=72.90  Aligned_cols=105  Identities=14%  Similarity=0.068  Sum_probs=73.7

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCC---------cccccChhhhhcCCcEEEEeccCChh
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVL---------FPYCANVYDLAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~---------~~~~~~l~el~~~aDiv~~~~p~t~~  143 (223)
                      +.++.++++.|+|.|.+|++++..|...|+ +|.+++|+.++.+.         .....+++++..++|+|+.++|..-.
T Consensus       121 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~  200 (281)
T 3o8q_A          121 QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLD  200 (281)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC-
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCC
Confidence            346789999999999999999999999997 89999998754221         01233566666889999999996532


Q ss_pred             hh-hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          144 TH-HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       144 t~-~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      .. ..++.   +.++++.+++++.-.+ .... +++..++.
T Consensus       201 ~~~~~l~~---~~l~~~~~V~DlvY~P-~~T~-ll~~A~~~  236 (281)
T 3o8q_A          201 GELPAIDP---VIFSSRSVCYDMMYGK-GYTV-FNQWARQH  236 (281)
T ss_dssp             ---CSCCG---GGEEEEEEEEESCCCS-SCCH-HHHHHHHT
T ss_pred             CCCCCCCH---HHhCcCCEEEEecCCC-ccCH-HHHHHHHC
Confidence            21 23443   3467899999998765 3344 44444443

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=98.12  E-value=1.7e-06  Score=72.80  Aligned_cols=106  Identities=12%  Similarity=0.067  Sum_probs=70.7

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc---------ccccChhhhhc-CCcEEEEeccCChhh
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF---------PYCANVYDLAV-NSDVLVVCCALTEQT  144 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~---------~~~~~l~el~~-~aDiv~~~~p~t~~t  144 (223)
                      .++.+++++|+|.|.+|++++..|...|.+|.+++|+.++....         ....+++++.+ ++|+|+.++|.....
T Consensus       115 ~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~~  194 (272)
T 1p77_A          115 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSG  194 (272)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC----
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCCCC
Confidence            35789999999999999999999999999999999986432210         11223444434 899999999865321


Q ss_pred             h-hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          145 H-HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       145 ~-~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      . .-++.+.   ++++.+++|+.-.+..+..-+.++-+.|
T Consensus       195 ~~~~i~~~~---l~~~~~v~D~~y~p~~~t~ll~~a~~~G  231 (272)
T 1p77_A          195 GTASVDAEI---LKLGSAFYDMQYAKGTDTPFIALCKSLG  231 (272)
T ss_dssp             ---CCCHHH---HHHCSCEEESCCCTTSCCHHHHHHHHTT
T ss_pred             CCCCCCHHH---cCCCCEEEEeeCCCCcCCHHHHHHHHcC
Confidence            1 0134343   3578899999987655455444444444

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=98.10  E-value=1.9e-06  Score=76.15  Aligned_cols=84  Identities=8%  Similarity=0.035  Sum_probs=61.0

Q ss_pred             CEEEEEecChHHHHHHHHHHh-CCCEEEEEc---CCCCC------CCC---------c----------ccccChhhhhcC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQA-FGFIISYNS---RRKRP------SVL---------F----------PYCANVYDLAVN  130 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~~~~---~~~~~------~~~---------~----------~~~~~l~el~~~  130 (223)
                      ++|+|||.|.||..+|..|.. .|++|.+|+   |+++.      ..+         .          ....++++.++.
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            589999999999999999977 599999999   54211      001         1          023467788899


Q ss_pred             CcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEc
Q 035615          131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMIINV  165 (223)
Q Consensus       131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~  165 (223)
                      +|+|++++|.. ..+.++ ++....+++++++|..
T Consensus        83 aD~Vilav~~~-~~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           83 ADVVILTVPAF-AHEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             CSEEEECSCGG-GHHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCEEEEeCchH-HHHHHH-HHHHhhCCCCcEEEEc
Confidence            99999999944 344444 3444567888999985

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.09  E-value=3e-06  Score=63.13  Aligned_cols=91  Identities=14%  Similarity=0.185  Sum_probs=57.9

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-----CCccc----ccC---hhhh-hcCCcEEEEeccCChh
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-----VLFPY----CAN---VYDL-AVNSDVLVVCCALTEQ  143 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~----~~~---l~el-~~~aDiv~~~~p~t~~  143 (223)
                      +.+++|.|+|+|.+|+.+++.|...|++|+++++++...     .+...    ..+   +.++ +..+|+|+.++|...+
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~   83 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ   83 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchH
Confidence            567889999999999999999999999999998765321     11111    112   2233 5689999999986422


Q ss_pred             hhhccCHHHHhcCCCCcEEEEcCCCc
Q 035615          144 THHIINKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga~lIN~arg~  169 (223)
                      ....+ ....+.+.+. .+|-..++.
T Consensus        84 ~~~~~-~~~~~~~~~~-~ii~~~~~~  107 (144)
T 2hmt_A           84 ASTLT-TLLLKELDIP-NIWVKAQNY  107 (144)
T ss_dssp             HHHHH-HHHHHHTTCS-EEEEECCSH
T ss_pred             HHHHH-HHHHHHcCCC-eEEEEeCCH
Confidence            22111 3344556665 555555444

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=98.09  E-value=1.3e-05  Score=68.22  Aligned_cols=79  Identities=18%  Similarity=0.319  Sum_probs=65.0

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.+++||++.|||-+ .+|+.+|..|...+++|..+....         .++.+..++||+|+.++.    .-+++..++
T Consensus       174 ~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T---------~dl~~~~~~ADIvV~A~G----~p~~i~~d~  240 (303)
T 4b4u_A          174 NIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT---------QNLPELVKQADIIVGAVG----KAELIQKDW  240 (303)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------SSHHHHHHTCSEEEECSC----STTCBCGGG
T ss_pred             CCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC---------CCHHHHhhcCCeEEeccC----CCCcccccc
Confidence            346999999999975 469999999999999998876432         478999999999999875    345777765


Q ss_pred             HhcCCCCcEEEEcCCC
Q 035615          153 MAELGKGGMIINVGRG  168 (223)
Q Consensus       153 l~~mk~ga~lIN~arg  168 (223)
                         .|+|+++||+|--
T Consensus       241 ---vk~GavVIDVGin  253 (303)
T 4b4u_A          241 ---IKQGAVVVDAGFH  253 (303)
T ss_dssp             ---SCTTCEEEECCCB
T ss_pred             ---ccCCCEEEEecee
Confidence               5899999999843

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.08  E-value=4.2e-06  Score=72.22  Aligned_cols=114  Identities=11%  Similarity=0.061  Sum_probs=80.7

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------------C----------cccccChhhhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------------L----------FPYCANVYDLA  128 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------------~----------~~~~~~l~el~  128 (223)
                      -.+|+|||.|.||+.+|..+...|++|..+|++++...                    +          .....++++.+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~   85 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV   85 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHT
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHh
Confidence            56899999999999999999999999999998764210                    0          01246788899


Q ss_pred             cCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCC
Q 035615          129 VNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEN  195 (223)
Q Consensus       129 ~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~  195 (223)
                      +.||+|+=++|.+-+.+.-+-++.=+.++++++|-..+.+  +....|.+.++. .-+..++--|.+
T Consensus        86 ~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~~-p~r~ig~HffNP  149 (319)
T 3ado_A           86 EGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLAH-VKQCIVAHPVNP  149 (319)
T ss_dssp             TTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCTT-GGGEEEEEECSS
T ss_pred             ccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhccC-CCcEEEecCCCC
Confidence            9999999999988776665556666678899987644333  445666666543 223345554433

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=98.08  E-value=1.2e-06  Score=74.39  Aligned_cols=91  Identities=16%  Similarity=0.146  Sum_probs=64.8

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cc---ccccChhhhh-cCCcEEEEeccCChhhhhccCH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LF---PYCANVYDLA-VNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~---~~~~~l~el~-~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      ++|+|||.|.||..+|..|...|.+|.+++|+.+...     +.   ....+..+.+ ..+|+|++++|.. .++..+ +
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l-~   80 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVI-P   80 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHG-G
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHH-H
Confidence            6899999999999999999988999999998754211     11   0112333444 7899999999844 455554 3


Q ss_pred             HHHhcCCCCcEEEEcCCCcccC
Q 035615          151 DVMAELGKGGMIINVGRGALID  172 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~vd  172 (223)
                      +....+++++++|.+.-|=-..
T Consensus        81 ~l~~~l~~~~~iv~~~nGi~~~  102 (294)
T 3g17_A           81 HLTYLAHEDTLIILAQNGYGQL  102 (294)
T ss_dssp             GHHHHEEEEEEEEECCSSCCCG
T ss_pred             HHHHhhCCCCEEEEeccCcccH
Confidence            3445567788999998875443

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.07  E-value=6e-06  Score=69.37  Aligned_cols=103  Identities=12%  Similarity=0.079  Sum_probs=69.8

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc---------ccccChhhhh-cCCcEEEEeccCChhhh
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF---------PYCANVYDLA-VNSDVLVVCCALTEQTH  145 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~---------~~~~~l~el~-~~aDiv~~~~p~t~~t~  145 (223)
                      ++.|+++.|+|.|.+|+++++.|...|.+|++++|+.++....         ....+++++. ..+|+|+.++|......
T Consensus       116 ~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~~  195 (271)
T 1nyt_A          116 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGD  195 (271)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGTC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCCC
Confidence            5789999999999999999999999999999999986432100         1112333443 58999999998653311


Q ss_pred             -hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          146 -HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       146 -~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                       .-+..+   .++++.+++|+.-.... .. +.+..++.
T Consensus       196 ~~~i~~~---~l~~~~~v~D~~y~p~~-t~-~~~~a~~~  229 (271)
T 1nyt_A          196 IPAIPSS---LIHPGIYCYDMFYQKGK-TP-FLAWCEQR  229 (271)
T ss_dssp             CCCCCGG---GCCTTCEEEESCCCSSC-CH-HHHHHHHT
T ss_pred             CCCCCHH---HcCCCCEEEEeccCCcC-CH-HHHHHHHc
Confidence             013332   35789999999887532 23 44444443

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.07  E-value=6.7e-06  Score=72.79  Aligned_cols=88  Identities=13%  Similarity=0.115  Sum_probs=65.8

Q ss_pred             CEEEEEecChHHHHHHHHHHhCC--------CEEEEEcCCCCCC------------------CC------cccccChhhh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFG--------FIISYNSRRKRPS------------------VL------FPYCANVYDL  127 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G--------~~V~~~~~~~~~~------------------~~------~~~~~~l~el  127 (223)
                      .+|+|||.|.+|.++|+.|...|        .+|..|.|.++..                  .+      .....++++.
T Consensus        35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~a  114 (391)
T 4fgw_A           35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDS  114 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHH
Confidence            38999999999999999997644        3588887764310                  01      1234688999


Q ss_pred             hcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCc
Q 035615          128 AVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       128 ~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~  169 (223)
                      ++.+|+|++++| +...+.++ ++....++++..+|+++.|=
T Consensus       115 l~~ad~ii~avP-s~~~r~~l-~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          115 VKDVDIIVFNIP-HQFLPRIC-SQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             HTTCSEEEECSC-GGGHHHHH-HHHTTTSCTTCEEEECCCSC
T ss_pred             HhcCCEEEEECC-hhhhHHHH-HHhccccCCCceeEEecccc
Confidence            999999999999 44555554 34555678899999999884

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.06  E-value=9.5e-06  Score=69.96  Aligned_cols=83  Identities=16%  Similarity=0.185  Sum_probs=63.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHHh-CC-CEEEEEcCCCCCCC-----------CcccccChhhhhcCCcEEEEeccCChhh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQA-FG-FIISYNSRRKRPSV-----------LFPYCANVYDLAVNSDVLVVCCALTEQT  144 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~-~G-~~V~~~~~~~~~~~-----------~~~~~~~l~el~~~aDiv~~~~p~t~~t  144 (223)
                      ..++++|||.|.+|+.+++.+.. .+ .+|.+|||++++.+           ... +.++++++ ++|+|++++|..   
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~---  198 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSR---  198 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCS---
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCC---
Confidence            36799999999999999998876 44 46899999875432           122 56888999 999999999954   


Q ss_pred             hhccCHHHHhcCCCCcEEEEcCCC
Q 035615          145 HHIINKDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~arg  168 (223)
                      ..++..   +.+++|..+++++.-
T Consensus       199 ~pv~~~---~~l~~G~~V~~ig~~  219 (322)
T 1omo_A          199 KPVVKA---EWVEEGTHINAIGAD  219 (322)
T ss_dssp             SCCBCG---GGCCTTCEEEECSCC
T ss_pred             CceecH---HHcCCCeEEEECCCC
Confidence            355543   457899999999643

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=98.05  E-value=5e-06  Score=71.34  Aligned_cols=101  Identities=8%  Similarity=0.082  Sum_probs=67.9

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCC-----------------cccccChhhhhcCCcEEEEeccC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVL-----------------FPYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~-----------------~~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      .++|+|||.|.||..+|..+...|+ +|..+|++++..+.                 .....++ +.++.||+|+++++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~   82 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI   82 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            4689999999999999999988888 99999988653221                 1112455 678999999999832


Q ss_pred             Ch-----------hhhhccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 035615          141 TE-----------QTHHIIN--KDVMAELGKGGMIINVGRGALIDEKEMLQFL  180 (223)
Q Consensus       141 t~-----------~t~~li~--~~~l~~mk~ga~lIN~arg~~vd~~al~~aL  180 (223)
                      ..           ++..++.  .+.+....+++++|+++...-+....+.+..
T Consensus        83 p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~~  135 (317)
T 2ewd_A           83 PGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKVS  135 (317)
T ss_dssp             SSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHhh
Confidence            11           1111110  1122233569999999886655556666654

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=98.04  E-value=8.7e-06  Score=68.67  Aligned_cols=106  Identities=14%  Similarity=0.076  Sum_probs=73.0

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCCc--------ccccChhhhh-cCCcEEEEeccCChh
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLF--------PYCANVYDLA-VNSDVLVVCCALTEQ  143 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~--------~~~~~l~el~-~~aDiv~~~~p~t~~  143 (223)
                      +.++.|+++.|+|.|.+|++++..|...|+ +|.+++|+.++.+..        ....+++++- .++|+|+.++|..-.
T Consensus       115 ~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~  194 (272)
T 3pwz_A          115 GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLT  194 (272)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGG
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCC
Confidence            345789999999999999999999999997 899999987543210        1122344443 789999999985432


Q ss_pred             hh-hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          144 TH-HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       144 t~-~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      .. ..+..   +.++++.+++++.-.+. .+.-|.+|-+.|
T Consensus       195 ~~~~~i~~---~~l~~~~~V~DlvY~P~-~T~ll~~A~~~G  231 (272)
T 3pwz_A          195 ADLPPLPA---DVLGEAALAYELAYGKG-LTPFLRLAREQG  231 (272)
T ss_dssp             TCCCCCCG---GGGTTCSEEEESSCSCC-SCHHHHHHHHHS
T ss_pred             CCCCCCCH---HHhCcCCEEEEeecCCC-CCHHHHHHHHCC
Confidence            11 12443   34678999999987643 344444454444

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.03  E-value=5.3e-06  Score=74.54  Aligned_cols=132  Identities=9%  Similarity=0.102  Sum_probs=83.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC------------CC-------------cccccChhhhhcCCc
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS------------VL-------------FPYCANVYDLAVNSD  132 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------~~-------------~~~~~~l~el~~~aD  132 (223)
                      +-.+|+|||+|-+|..+|..+...|++|+++|.++++.            .+             .....+.++.++.||
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad   99 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATD   99 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCC
Confidence            45699999999999999999999999999999775321            00             112456788899999


Q ss_pred             EEEEeccCChhh-h------hccC--HHHHhcCC---CCcEEEEcCCCcccCHHHHH-HHHHcCCceEEEee-CCCCCCC
Q 035615          133 VLVVCCALTEQT-H------HIIN--KDVMAELG---KGGMIINVGRGALIDEKEML-QFLVQGDINGVGLD-VFENDPN  198 (223)
Q Consensus       133 iv~~~~p~t~~t-~------~li~--~~~l~~mk---~ga~lIN~arg~~vd~~al~-~aL~~~~i~~a~lD-V~~~EP~  198 (223)
                      ++++|+| ||.. .      .+..  +...+.|+   ++.++|.-|.-.+=-.+.+. ..|++.. .+.-.+ +|.+|-+
T Consensus       100 ~~~I~Vp-TP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~-~~~~f~v~~~PErl  177 (444)
T 3vtf_A          100 ATFIAVG-TPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEA-GGVKFSVASNPEFL  177 (444)
T ss_dssp             EEEECCC-CCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTT-TTCCCEEEECCCCC
T ss_pred             ceEEEec-CCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhC-CCCCceeecCcccc
Confidence            9999998 3321 1      1111  22233343   67899998887664444443 3343322 111112 3567765


Q ss_pred             CCC----CCCCCCceEE
Q 035615          199 VPK----EPLRLDNIVL  211 (223)
Q Consensus       199 ~~~----~l~~~~nv~~  211 (223)
                      .+.    .+...++|++
T Consensus       178 ~eG~a~~d~~~~~riVi  194 (444)
T 3vtf_A          178 REGSALEDFFKPDRIVI  194 (444)
T ss_dssp             CTTSHHHHHHSCSCEEE
T ss_pred             cCCccccccccCCcEEE
Confidence            543    3666677764

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.99  E-value=4.2e-06  Score=62.83  Aligned_cols=85  Identities=12%  Similarity=0.053  Sum_probs=54.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc----ccC---hhhh-hcCCcEEEEeccCChhh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY----CAN---VYDL-AVNSDVLVVCCALTEQT  144 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~----~~~---l~el-~~~aDiv~~~~p~t~~t  144 (223)
                      .++++.|+|+|.+|+.+++.|...|++|++++++++...     +...    ..+   +.++ +.++|+|++++|..+.+
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~n   84 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEFN   84 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHHH
Confidence            467899999999999999999999999999998765321     1110    112   2222 46899999999833322


Q ss_pred             hhccCHHHHhcCCCCcEEEE
Q 035615          145 HHIINKDVMAELGKGGMIIN  164 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN  164 (223)
                      .  .-....+.+....+++-
T Consensus        85 ~--~~~~~a~~~~~~~iia~  102 (141)
T 3llv_A           85 L--KILKALRSVSDVYAIVR  102 (141)
T ss_dssp             H--HHHHHHHHHCCCCEEEE
T ss_pred             H--HHHHHHHHhCCceEEEE
Confidence            2  22334444453344443

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=97.96  E-value=3.1e-05  Score=64.50  Aligned_cols=100  Identities=18%  Similarity=0.234  Sum_probs=70.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEE-EEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFII-SYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL  156 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V-~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~m  156 (223)
                      .-++|+++|+|+||+.+++.  . ++++ .+|+ ......+.....++++++.+.|+|+-|.+ .+    -+.+...+.|
T Consensus        11 ~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~-~k~gelgv~a~~d~d~lla~pD~VVe~A~-~~----av~e~~~~iL   81 (253)
T 1j5p_A           11 HHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD-RISKDIPGVVRLDEFQVPSDVSTVVECAS-PE----AVKEYSLQIL   81 (253)
T ss_dssp             CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC-SSCCCCSSSEECSSCCCCTTCCEEEECSC-HH----HHHHHHHHHT
T ss_pred             ccceEEEECcCHHHHHHHhc--C-CcEEEEEEe-ccccccCceeeCCHHHHhhCCCEEEECCC-HH----HHHHHHHHHH
Confidence            46899999999999999998  4 8875 4666 11111133446789999989999987764 22    2333355668


Q ss_pred             CCCcEEEEcCCCcccCH---HHHHHHHHcCCce
Q 035615          157 GKGGMIINVGRGALIDE---KEMLQFLVQGDIN  186 (223)
Q Consensus       157 k~ga~lIN~arg~~vd~---~al~~aL~~~~i~  186 (223)
                      +.|.-+|-+|-|.+.|+   +.|.++-++|.-.
T Consensus        82 ~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~  114 (253)
T 1j5p_A           82 KNPVNYIIISTSAFADEVFRERFFSELKNSPAR  114 (253)
T ss_dssp             TSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCE
T ss_pred             HCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCe
Confidence            89999999999988887   4555666665544

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.92  E-value=3.9e-05  Score=63.62  Aligned_cols=80  Identities=11%  Similarity=0.154  Sum_probs=56.1

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEE-EEcCCCCCCCCcccccChhhhhcCCcEEEEec-cCChhhhhccCHHHHhcCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIIS-YNSRRKRPSVLFPYCANVYDLAVNSDVLVVCC-ALTEQTHHIINKDVMAELG  157 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~-p~t~~t~~li~~~~l~~mk  157 (223)
                      ++|+|+|+|+||+.+++.+...+.++. ++++......+...+.++++++ ++|+++-.. |  ..+..     .+. ++
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~~~gv~v~~dl~~l~-~~DVvIDft~p--~a~~~-----~~~-l~   74 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVK-GADVAIDFSNP--NLLFP-----LLD-ED   74 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC--CCSCBCSCTTTCT-TCSEEEECSCH--HHHHH-----HHT-SC
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccccCCCceeCCHHHHh-CCCEEEEeCCh--HHHHH-----HHH-Hh
Confidence            689999999999999999987755755 5788766544555667888988 999987433 3  22222     233 67


Q ss_pred             CCcEEEEcCCC
Q 035615          158 KGGMIINVGRG  168 (223)
Q Consensus       158 ~ga~lIN~arg  168 (223)
                      .|.-+|....|
T Consensus        75 ~g~~vVigTTG   85 (243)
T 3qy9_A           75 FHLPLVVATTG   85 (243)
T ss_dssp             CCCCEEECCCS
T ss_pred             cCCceEeCCCC
Confidence            77767765566

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.92  E-value=1.2e-05  Score=68.75  Aligned_cols=61  Identities=20%  Similarity=0.213  Sum_probs=47.2

Q ss_pred             CEEEEEecChHHHHHHHHHHhCC--CEEEEEcCCCCCCC---------------Cccc-ccChhhhhcCCcEEEEeccCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFG--FIISYNSRRKRPSV---------------LFPY-CANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~---------------~~~~-~~~l~el~~~aDiv~~~~p~t  141 (223)
                      ++|+|||.|.||..+|..|...|  .+|..+|++++...               .... ..+. +.++.||+|++++|..
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~   80 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence            58999999999999999998878  68999998764321               0111 2455 6788999999999854

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.92  E-value=1.7e-05  Score=67.27  Aligned_cols=104  Identities=13%  Similarity=0.180  Sum_probs=71.2

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC----Cc--ccccChhhhhcCCcEEEEeccCC--hhhh
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV----LF--PYCANVYDLAVNSDVLVVCCALT--EQTH  145 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~----~~--~~~~~l~el~~~aDiv~~~~p~t--~~t~  145 (223)
                      .++.|+++.|+|.|.+|++++..|...|+ +|.+++|+.++.+    ..  ..+.++++ + ++|+|+.++|..  +...
T Consensus       118 ~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~  195 (282)
T 3fbt_A          118 VEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEG  195 (282)
T ss_dssp             CCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTT
T ss_pred             CCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCc
Confidence            45789999999999999999999999999 8999999875432    11  11233444 4 899999999863  2211


Q ss_pred             -hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 035615          146 -HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDI  185 (223)
Q Consensus       146 -~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i  185 (223)
                       -.++.+.   ++++.+++++.-.+. . ..|+++-++..+
T Consensus       196 ~~pi~~~~---l~~~~~v~DlvY~P~-~-T~ll~~A~~~G~  231 (282)
T 3fbt_A          196 ESPVDKEV---VAKFSSAVDLIYNPV-E-TLFLKYARESGV  231 (282)
T ss_dssp             CCSSCHHH---HTTCSEEEESCCSSS-S-CHHHHHHHHTTC
T ss_pred             cCCCCHHH---cCCCCEEEEEeeCCC-C-CHHHHHHHHCcC
Confidence             1245444   478899999876553 2 344444444433

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.90  E-value=1.5e-05  Score=67.66  Aligned_cols=103  Identities=17%  Similarity=0.224  Sum_probs=68.1

Q ss_pred             CCEEEEEecChHHHH-HHHHHHh-CCCEEE-EEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           79 GMQVGIVRLGNIGSE-VLNRLQA-FGFIIS-YNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        79 g~~vgIiG~G~iG~~-~a~~l~~-~G~~V~-~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      ..+|||||+|.||+. .++.++. -++++. ++|++++...      +...+.++++++++.|+|++++|........  
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~--   83 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEII--   83 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHH--
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHH--
Confidence            468999999999996 8888876 477876 7888765432      3334789999999999999999954332222  


Q ss_pred             HHHHhcCCCCc-EEEE-cCCCcccCHHHHHHHHHcCCce
Q 035615          150 KDVMAELGKGG-MIIN-VGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       150 ~~~l~~mk~ga-~lIN-~arg~~vd~~al~~aL~~~~i~  186 (223)
                      ...   ++.|. +++. -.--.+-+.+.|.++.++.++.
T Consensus        84 ~~a---l~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~  119 (308)
T 3uuw_A           84 KIL---LNLGVHVYVDKPLASTVSQGEELIELSTKKNLN  119 (308)
T ss_dssp             HHH---HHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCC
T ss_pred             HHH---HHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence            223   33443 4443 2233444566677777665543

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.89  E-value=3.7e-05  Score=65.61  Aligned_cols=103  Identities=19%  Similarity=0.317  Sum_probs=68.5

Q ss_pred             CCEEEEEecChHHHH-HHHHHHh-CCCEEE-EEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615           79 GMQVGIVRLGNIGSE-VLNRLQA-FGFIIS-YNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        79 g~~vgIiG~G~iG~~-~a~~l~~-~G~~V~-~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      -.+|||||+|.||+. +++.+.. -++++. ++|+++....      +...+.+.+++..+.|+|++++|.......   
T Consensus         5 ~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~---   81 (319)
T 1tlt_A            5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDV---   81 (319)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHH---
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHH---
Confidence            358999999999997 8888865 477865 7888876532      223456777776789999999995433222   


Q ss_pred             HHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCce
Q 035615          150 KDVMAELGKGG-MIINV-GRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       150 ~~~l~~mk~ga-~lIN~-arg~~vd~~al~~aL~~~~i~  186 (223)
                        ....++.|. +++.- .-..+-+.+.|.++.++..+.
T Consensus        82 --~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~  118 (319)
T 1tlt_A           82 --VSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT  118 (319)
T ss_dssp             --HHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             --HHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence              222345565 55542 223445566788888776665

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.89  E-value=2.5e-05  Score=66.20  Aligned_cols=105  Identities=14%  Similarity=0.091  Sum_probs=73.8

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCC-------------ccc--ccChhhhhcCCcEEEEec
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVL-------------FPY--CANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~-------------~~~--~~~l~el~~~aDiv~~~~  138 (223)
                      .+++++++.|+|.|.+|++++..|...|+ +|.+++|+.++.+.             ...  ..++++.++++|+|+.++
T Consensus       123 ~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaT  202 (283)
T 3jyo_A          123 PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNAT  202 (283)
T ss_dssp             TTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECS
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECC
Confidence            35789999999999999999999999999 69999998654321             001  236778888999999999


Q ss_pred             cCChhhh--hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          139 ALTEQTH--HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       139 p~t~~t~--~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      |..-...  -.++   .+.++++.+++++.-.+. ...-|.+|-+.|
T Consensus       203 p~Gm~~~~~~pi~---~~~l~~~~~v~DlvY~P~-~T~ll~~A~~~G  245 (283)
T 3jyo_A          203 PMGMPAHPGTAFD---VSCLTKDHWVGDVVYMPI-ETELLKAARALG  245 (283)
T ss_dssp             STTSTTSCSCSSC---GGGCCTTCEEEECCCSSS-SCHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCC---HHHhCCCCEEEEecCCCC-CCHHHHHHHHCc
Confidence            8542111  1233   245688899999877653 344444444444

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.87  E-value=9.7e-05  Score=65.18  Aligned_cols=92  Identities=10%  Similarity=0.116  Sum_probs=73.6

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCC-------CCCCCc-----------ccccChhhhhcCCcEE
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRK-------RPSVLF-----------PYCANVYDLAVNSDVL  134 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~-------~~~~~~-----------~~~~~l~el~~~aDiv  134 (223)
                      +..++..+|.|+|.|..|..+|+.+.++|. +|+.+|+..       ......           ....+|+|.++.+|++
T Consensus       183 g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~  262 (398)
T 2a9f_A          183 KKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIF  262 (398)
T ss_dssp             TCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSE
T ss_pred             CCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEE
Confidence            456889999999999999999999999999 899998763       111111           0134699999999987


Q ss_pred             EEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcc
Q 035615          135 VVCCALTEQTHHIINKDVMAELGKGGMIINVGRGAL  170 (223)
Q Consensus       135 ~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~  170 (223)
                      +=.-     .-++++++.++.|+++++++.+|+-..
T Consensus       263 IG~S-----apgl~T~EmVk~Ma~~pIIfalsNPt~  293 (398)
T 2a9f_A          263 IGVS-----APGVLKAEWISKMAARPVIFAMANPIP  293 (398)
T ss_dssp             EECC-----STTCCCHHHHHTSCSSCEEEECCSSSC
T ss_pred             EecC-----CCCCCCHHHHHhhCCCCEEEECCCCCc
Confidence            6542     358999999999999999999998653

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.86  E-value=2.9e-05  Score=66.77  Aligned_cols=108  Identities=11%  Similarity=0.063  Sum_probs=71.6

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCC---CCC----------C--c--cccc---ChhhhhcCCc
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKR---PSV----------L--F--PYCA---NVYDLAVNSD  132 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~---~~~----------~--~--~~~~---~l~el~~~aD  132 (223)
                      +.+++|+++.|+|.|.+|++++..|...|+ +|.+++|+.+   +.+          +  .  ....   ++.+.+.++|
T Consensus       149 ~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aD  228 (315)
T 3tnl_A          149 GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESV  228 (315)
T ss_dssp             TCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCC
Confidence            346889999999999999999999999999 8999999832   211          0  0  0112   2456678999


Q ss_pred             EEEEeccCC--hhhhh-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 035615          133 VLVVCCALT--EQTHH-IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDI  185 (223)
Q Consensus       133 iv~~~~p~t--~~t~~-li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i  185 (223)
                      +|+.++|..  +.... .+.  ....++++.+++++.-.+. .. .|+++-++..+
T Consensus       229 iIINaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~P~-~T-~ll~~A~~~G~  280 (315)
T 3tnl_A          229 IFTNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYKPT-KT-RLLEIAEEQGC  280 (315)
T ss_dssp             EEEECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCSSS-SC-HHHHHHHHTTC
T ss_pred             EEEECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccCCC-CC-HHHHHHHHCCC
Confidence            999999854  21111 121  2234688999999987654 33 34444444333

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.86  E-value=2.3e-05  Score=67.26  Aligned_cols=62  Identities=11%  Similarity=0.193  Sum_probs=49.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhC-CCEEE-EEcCCCCCCC------CcccccChhhhhc--CCcEEEEeccCCh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF-GFIIS-YNSRRKRPSV------LFPYCANVYDLAV--NSDVLVVCCALTE  142 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~------~~~~~~~l~el~~--~aDiv~~~~p~t~  142 (223)
                      .+|||||+|.||+..++.+... ++++. ++|+++....      +.. +.+++++++  +.|+|++++|...
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~   75 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDT   75 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGG
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchh
Confidence            5899999999999999999875 78866 6888765422      334 789999998  8999999998543

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.85  E-value=3.4e-05  Score=66.51  Aligned_cols=63  Identities=11%  Similarity=0.091  Sum_probs=50.5

Q ss_pred             CEEEEEecChHHHHHHHHHHhC-CCEEE-EEcCCCCCCC------CcccccChhhhhc--CCcEEEEeccCCh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF-GFIIS-YNSRRKRPSV------LFPYCANVYDLAV--NSDVLVVCCALTE  142 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~------~~~~~~~l~el~~--~aDiv~~~~p~t~  142 (223)
                      .+|||||+|.||+..++.++.. ++++. ++|+++....      +...+.+++++++  +.|+|++++|...
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~   77 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTST   77 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGG
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchh
Confidence            5899999999999999999876 77865 6888764321      3445789999998  8999999998543

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.84  E-value=4.8e-05  Score=68.21  Aligned_cols=106  Identities=12%  Similarity=0.158  Sum_probs=77.4

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCC---EEEEEc----CC----CC-C---CCCc-----c------cccChhhh
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGF---IISYNS----RR----KR-P---SVLF-----P------YCANVYDL  127 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~---~V~~~~----~~----~~-~---~~~~-----~------~~~~l~el  127 (223)
                      +.+++++++.|+|.|..|+++++.|...|.   +|+++|    |+    .. .   ....     .      ...++.+.
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~  260 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEA  260 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHH
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHH
Confidence            345789999999999999999999999998   699888    76    22 1   1110     0      13467888


Q ss_pred             hcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 035615          128 AVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGD  184 (223)
Q Consensus       128 ~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~  184 (223)
                      ++.+|+|+.+.|..   .+++.++.++.|+++.++++++.-.  .+.-+.+|.+.|.
T Consensus       261 l~~aDVlInaT~~~---~G~~~~e~v~~m~~~~iVfDLynP~--~t~~~~~A~~~G~  312 (439)
T 2dvm_A          261 LKDADVLISFTRPG---PGVIKPQWIEKMNEDAIVFPLANPV--PEILPEEAKKAGA  312 (439)
T ss_dssp             HTTCSEEEECSCCC---SSSSCHHHHTTSCTTCEEEECCSSS--CSSCHHHHHHHTC
T ss_pred             hccCCEEEEcCCCc---cCCCChHHHHhcCCCCEEEECCCCC--CcchHHHHHHcCC
Confidence            99999999998742   1556667788899999999995433  4444555555554

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.84  E-value=5.2e-05  Score=57.70  Aligned_cols=87  Identities=3%  Similarity=-0.099  Sum_probs=57.2

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC---------CCCcc-------cccChhhh-hcCCcEEEEeccCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP---------SVLFP-------YCANVYDL-AVNSDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~---------~~~~~-------~~~~l~el-~~~aDiv~~~~p~t  141 (223)
                      .+++.|+|+|.+|+.+++.|...|++|.++++++..         ..+..       ....+.+. +..+|.|+++++..
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   82 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence            567999999999999999999999999999886410         11111       11234444 78999999999855


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      +.+..+  ....+.+.+...+|...+
T Consensus        83 ~~n~~~--~~~a~~~~~~~~ii~~~~  106 (153)
T 1id1_A           83 ADNAFV--VLSAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             HHHHHH--HHHHHHHTSSSCEEEECS
T ss_pred             HHHHHH--HHHHHHHCCCCEEEEEEC
Confidence            433322  344555544444554333

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.83  E-value=1.9e-05  Score=67.92  Aligned_cols=107  Identities=22%  Similarity=0.323  Sum_probs=66.7

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCCC--------------cc-cccChhhhhcCCcEEEEeccCCh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSVL--------------FP-YCANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~--------------~~-~~~~l~el~~~aDiv~~~~p~t~  142 (223)
                      ++|+|||.|.||..++..|...|.  +|..+|++++....              .. ...+ .+.++.||+|++++|...
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence            479999999999999999988888  99999987542211              00 1123 356789999999998533


Q ss_pred             h---hh--------hccCHHH---HhcCCCCcEEEEcCCCcccCHHHHHHHH--HcCCceEE
Q 035615          143 Q---TH--------HIINKDV---MAELGKGGMIINVGRGALIDEKEMLQFL--VQGDINGV  188 (223)
Q Consensus       143 ~---t~--------~li~~~~---l~~mk~ga~lIN~arg~~vd~~al~~aL--~~~~i~~a  188 (223)
                      .   ++        .++ .+.   +....|++++|+++.+.-+....+.+..  ...++.|.
T Consensus        80 ~~g~~r~dl~~~n~~i~-~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~  140 (319)
T 1a5z_A           80 KPGETRLQLLGRNARVM-KEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS  140 (319)
T ss_dssp             CSSCCHHHHHHHHHHHH-HHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             CCCCCHHHHHHHHHHHH-HHHHHHHHhhCCCeEEEEeCCcHHHHHHHHHHHhCCChhhEEee
Confidence            1   01        111 222   2222578899988665433333333332  34455544

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.83  E-value=1.8e-05  Score=67.52  Aligned_cols=102  Identities=7%  Similarity=0.149  Sum_probs=66.2

Q ss_pred             CEEEEEecChHHHHHHHHHHhC-CCEE-EEEcCCCCCCC----CcccccChhhhhc--CCcEEEEeccCChhhhhccCHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF-GFII-SYNSRRKRPSV----LFPYCANVYDLAV--NSDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~-G~~V-~~~~~~~~~~~----~~~~~~~l~el~~--~aDiv~~~~p~t~~t~~li~~~  151 (223)
                      .+|||||+|.||+.+++.+... ++++ .++|+++....    ....+.+++++++  ++|+|++++|.......     
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~-----   85 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPGCVIESDWRSVVSAPEVEAVIIATPPATHAEI-----   85 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTTCEEESSTHHHHTCTTCCEEEEESCGGGHHHH-----
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhhCcccCCHHHHhhCCCCCEEEEeCChHHHHHH-----
Confidence            5899999999999999999876 6775 47887754322    1234678899985  79999999984422221     


Q ss_pred             HHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCce
Q 035615          152 VMAELGKGG-MIINV-GRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       152 ~l~~mk~ga-~lIN~-arg~~vd~~al~~aL~~~~i~  186 (223)
                      ....++.|. +++.- .--.+-+.+.|.++.++.++.
T Consensus        86 ~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~  122 (315)
T 3c1a_A           86 TLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVM  122 (315)
T ss_dssp             HHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCE
Confidence            222345554 45542 222334456677777665543

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.83  E-value=1.8e-05  Score=67.55  Aligned_cols=102  Identities=18%  Similarity=0.258  Sum_probs=65.0

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccccc---------cC-hhhhhcCCcEEEEeccCChh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYC---------AN-VYDLAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~---------~~-l~el~~~aDiv~~~~p~t~~  143 (223)
                      .++|+|||.|.||..++..|. .|.+|.+++|+....+     +....         .+ -++....+|+|++++|.. +
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~   79 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQH-Q   79 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGG-G
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHH-H
Confidence            368999999999999999999 8999999998764211     11100         00 134567899999999843 3


Q ss_pred             hhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          144 THHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      +...+  +.++.+.+++ +|.+.-|=-. ++.+.+.+...++.
T Consensus        80 ~~~~l--~~l~~~~~~~-ivs~~nGi~~-~e~l~~~~~~~~vl  118 (307)
T 3ego_A           80 LQSVF--SSLERIGKTN-ILFLQNGMGH-IHDLKDWHVGHSIY  118 (307)
T ss_dssp             HHHHH--HHTTSSCCCE-EEECCSSSHH-HHHHHTCCCSCEEE
T ss_pred             HHHHH--HHhhcCCCCe-EEEecCCccH-HHHHHHhCCCCcEE
Confidence            44443  2333445566 8888776432 23444444444443

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.82  E-value=8.2e-06  Score=69.06  Aligned_cols=104  Identities=11%  Similarity=0.066  Sum_probs=71.5

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcc---------------cccChhhhhcCCcEEEEeccC
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFP---------------YCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~---------------~~~~l~el~~~aDiv~~~~p~  140 (223)
                      ++.++++.|+|.|.||+++++.|...| +|++++|+.++.....               ...++.+.+..+|+|+.++|.
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~  203 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPI  203 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCT
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCC
Confidence            578999999999999999999999999 9999998764321110               112234567889999999985


Q ss_pred             Chhh--hh-cc-CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 035615          141 TEQT--HH-II-NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDI  185 (223)
Q Consensus       141 t~~t--~~-li-~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i  185 (223)
                      ....  .. .+ +   .+.++++.+++|+.-... .. .|.+..++...
T Consensus       204 ~~~~~~~~~~~~~---~~~l~~~~~v~Dv~y~p~-~t-~ll~~a~~~G~  247 (287)
T 1nvt_A          204 GMYPNIDVEPIVK---AEKLREDMVVMDLIYNPL-ET-VLLKEAKKVNA  247 (287)
T ss_dssp             TCTTCCSSCCSSC---STTCCSSSEEEECCCSSS-SC-HHHHHHHTTTC
T ss_pred             CCCCCCCCCCCCC---HHHcCCCCEEEEeeeCCc-cC-HHHHHHHHCCC
Confidence            4321  10 12 2   346789999999987543 23 35555555444

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.82  E-value=4.2e-05  Score=66.15  Aligned_cols=90  Identities=11%  Similarity=0.006  Sum_probs=62.4

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCC-----------------cccccChhhhhcCCcEEEEec--
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVL-----------------FPYCANVYDLAVNSDVLVVCC--  138 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~-----------------~~~~~~l~el~~~aDiv~~~~--  138 (223)
                      .++|+|||.|.+|..+|..|...|+ +|..||++++..+.                 .....++++.++.||+|++++  
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~   88 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL   88 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCC
Confidence            4689999999999999999988887 89999988653211                 111367777899999999998  


Q ss_pred             cCChhh------hhc-c------CH---HHHhcCCCCcEEEEcCCC
Q 035615          139 ALTEQT------HHI-I------NK---DVMAELGKGGMIINVGRG  168 (223)
Q Consensus       139 p~t~~t------~~l-i------~~---~~l~~mk~ga~lIN~arg  168 (223)
                      |..+..      +.- +      -+   +.+....|.+++|+++.-
T Consensus        89 p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP  134 (331)
T 1pzg_A           89 TKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP  134 (331)
T ss_dssp             SSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             CCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCc
Confidence            644321      111 0      01   123334588999988653

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.81  E-value=7.4e-05  Score=64.19  Aligned_cols=100  Identities=18%  Similarity=0.176  Sum_probs=66.0

Q ss_pred             CEEEEEecChHHHHHHHHHHhC-CCEE-EEEcCCCCCCC--CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF-GFII-SYNSRRKRPSV--LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE  155 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~-G~~V-~~~~~~~~~~~--~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~  155 (223)
                      .+|||||+|+||+.+++.+... ++++ .++|+++....  +...+.++++++.++|+|++++|.....     +.....
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~~~~gv~~~~d~~~ll~~~DvViiatp~~~h~-----~~~~~a   78 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDI-----PEQAPK   78 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHhhcCCCceeCCHHHHhcCCCEEEEcCCcHHHH-----HHHHHH
Confidence            4799999999999999998876 6775 46777644321  2223567888888899999999854222     223345


Q ss_pred             CCCCcEEEEcCCCccc--CH-HHHHHHHHcCC
Q 035615          156 LGKGGMIINVGRGALI--DE-KEMLQFLVQGD  184 (223)
Q Consensus       156 mk~ga~lIN~arg~~v--d~-~al~~aL~~~~  184 (223)
                      ++.|.-+|...-..+-  +. +.|.++.+++.
T Consensus        79 l~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           79 FAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             HTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             HHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence            6667766665544332  22 45666666554

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.81  E-value=3.5e-05  Score=66.73  Aligned_cols=64  Identities=11%  Similarity=0.098  Sum_probs=50.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhC-CCEEE-EEcCCCCCCC------CcccccChhhhh--cCCcEEEEeccCChh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF-GFIIS-YNSRRKRPSV------LFPYCANVYDLA--VNSDVLVVCCALTEQ  143 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~------~~~~~~~l~el~--~~aDiv~~~~p~t~~  143 (223)
                      .+|||||+|.||+..++.++.. ++++. ++|+++....      +...+.++++++  .+.|+|++++|....
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h   79 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKH   79 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSH
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHH
Confidence            5899999999999999999887 78865 7788765432      334478999999  569999999996543

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.80  E-value=2.4e-05  Score=67.80  Aligned_cols=63  Identities=11%  Similarity=0.114  Sum_probs=50.8

Q ss_pred             CCEEEEEecChHHHHHHHHHHhC--CCEEE-EEcCCCCCCC------CcccccChhhhhc--CCcEEEEeccCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAF--GFIIS-YNSRRKRPSV------LFPYCANVYDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~--G~~V~-~~~~~~~~~~------~~~~~~~l~el~~--~aDiv~~~~p~t  141 (223)
                      -.+|||||+|.||+..++.++..  +++++ ++|+++....      +...+.+++++++  +.|+|++++|..
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   86 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSG   86 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGG
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcH
Confidence            46899999999999999999877  78865 7888765432      3445789999987  899999999854

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.79  E-value=8.1e-05  Score=63.86  Aligned_cols=63  Identities=13%  Similarity=0.169  Sum_probs=49.1

Q ss_pred             CCEEEEEecChHHHHHHHHHHhC-CCEEE-EEcCCCCCCC------Cc-ccccChhhhhc--CCcEEEEeccCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAF-GFIIS-YNSRRKRPSV------LF-PYCANVYDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~------~~-~~~~~l~el~~--~aDiv~~~~p~t  141 (223)
                      -.+|||||+|.||+..++.++.. ++++. ++|+++....      +. ..+.++++++.  +.|+|++++|..
T Consensus         5 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   78 (329)
T 3evn_A            5 KVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQ   78 (329)
T ss_dssp             CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGG
T ss_pred             ceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcH
Confidence            36899999999999999988765 56654 6788776543      22 24678999998  799999999854

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.78  E-value=9e-05  Score=62.86  Aligned_cols=104  Identities=15%  Similarity=0.172  Sum_probs=70.1

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHhCCCEEE-EEcCCCC--CCCCcccccChhhhhc--CCcEEEEeccCChhhhhccCHHH
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQAFGFIIS-YNSRRKR--PSVLFPYCANVYDLAV--NSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~-~~~~~~~--~~~~~~~~~~l~el~~--~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      ..+|+|+|+ |++|+..++.++..|++++ .+++...  ...+...+.+++|+..  ..|++++++|.. ....++ .+.
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~~~~G~~vy~sl~el~~~~~~D~viI~tP~~-~~~~~~-~ea   84 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAP-FCKDSI-LEA   84 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCGG-GHHHHH-HHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccceeCCeeccCCHHHHhhcCCCCEEEEecCHH-HHHHHH-HHH
Confidence            568999999 9999999999998899854 5666532  2224445788999988  899999999843 333333 233


Q ss_pred             HhcCCCCcEEEEcCCCc-ccCHHHHHHHHHcCCce
Q 035615          153 MAELGKGGMIINVGRGA-LIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~-~vd~~al~~aL~~~~i~  186 (223)
                      ++. .. ..+|..+-|- .-+.+.|.++.++..+.
T Consensus        85 ~~~-Gi-~~iVi~t~G~~~~~~~~l~~~A~~~gv~  117 (288)
T 2nu8_A           85 IDA-GI-KLIITITEGIPTLDMLTVKVKLDEAGVR  117 (288)
T ss_dssp             HHT-TC-SEEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHC-CC-CEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            332 22 2345555553 23455888888876664

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.78  E-value=2.7e-05  Score=66.67  Aligned_cols=62  Identities=16%  Similarity=0.148  Sum_probs=47.2

Q ss_pred             CEEEEEecChHHHHH-HHHHHhCCCEEE-EEcCCCCCCC------Cc-ccccChhhhhc--CCcEEEEeccCC
Q 035615           80 MQVGIVRLGNIGSEV-LNRLQAFGFIIS-YNSRRKRPSV------LF-PYCANVYDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~-a~~l~~~G~~V~-~~~~~~~~~~------~~-~~~~~l~el~~--~aDiv~~~~p~t  141 (223)
                      .+|||||+|.||+.+ ++.+...+++++ ++|+++....      +. ..+.+++++++  +.|+|++++|..
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~   73 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNE   73 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGG
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChh
Confidence            379999999999998 777766788865 6788764321      22 24678999987  499999999843

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.75  E-value=7.3e-05  Score=63.77  Aligned_cols=101  Identities=22%  Similarity=0.239  Sum_probs=61.1

Q ss_pred             CCEEEEEecChHHHHHHHHHHhC-CCEEE-EEcCCCCCCC--Cc--ccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAF-GFIIS-YNSRRKRPSV--LF--PYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~--~~--~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      -.+|||||+|+||+.+++.++.. ++++. ++|+++....  +.  ..+.++.+. .++|+|++|+|.....     +..
T Consensus         9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~~g~~~~~~~~l~~~-~~~DvViiatp~~~h~-----~~~   82 (304)
T 3bio_A            9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQPFRVVSDIEQL-ESVDVALVCSPSREVE-----RTA   82 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-------CCTTSCEESSGGGS-SSCCEEEECSCHHHHH-----HHH
T ss_pred             CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHcCCCcCCHHHHHhC-CCCCEEEECCCchhhH-----HHH
Confidence            35899999999999999999864 67876 6888765432  11  124455555 7899999999833221     222


Q ss_pred             HhcCCCCcEEEEcCC--C-cccCHHHHHHHHHcCCc
Q 035615          153 MAELGKGGMIINVGR--G-ALIDEKEMLQFLVQGDI  185 (223)
Q Consensus       153 l~~mk~ga~lIN~ar--g-~~vd~~al~~aL~~~~i  185 (223)
                      ...++.|.-++...-  + ...+...|.++.++..+
T Consensus        83 ~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~  118 (304)
T 3bio_A           83 LEILKKGICTADSFDIHDGILALRRSLGDAAGKSGA  118 (304)
T ss_dssp             HHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCC
Confidence            334566766776532  2 22334566666666443

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.74  E-value=4e-05  Score=65.88  Aligned_cols=64  Identities=14%  Similarity=0.122  Sum_probs=50.3

Q ss_pred             CCEEEEEecChHHHHHHHHHHhC-CCEEE-EEcCCCCCCC------Cc-ccccChhhhhc--CCcEEEEeccCCh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAF-GFIIS-YNSRRKRPSV------LF-PYCANVYDLAV--NSDVLVVCCALTE  142 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~------~~-~~~~~l~el~~--~aDiv~~~~p~t~  142 (223)
                      -.+|||||+|.||+..++.++.. ++++. ++|+++....      +. ..+.++++++.  +.|+|++++|...
T Consensus         5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   79 (330)
T 3e9m_A            5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQG   79 (330)
T ss_dssp             CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGG
T ss_pred             eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHH
Confidence            46899999999999999999875 67765 6788765422      22 34678999997  7999999999553

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.72  E-value=6.6e-05  Score=64.23  Aligned_cols=60  Identities=18%  Similarity=0.267  Sum_probs=46.5

Q ss_pred             CEEEEEecChHHHHHHHHHHh--CCCEEEEEcCCCCCCCC-----------------cccccChhhhhcCCcEEEEeccC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQA--FGFIISYNSRRKRPSVL-----------------FPYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~--~G~~V~~~~~~~~~~~~-----------------~~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      ++|+|||.|.+|..+|..|..  +|.+|..+|++++..++                 .....+.++ ++.||+|++++|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            479999999999999999986  58899999998653210                 011245666 8999999999974

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.71  E-value=3e-05  Score=62.55  Aligned_cols=84  Identities=11%  Similarity=0.033  Sum_probs=55.1

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------Ccc-------cccChhhh-hcCCcEEEEeccCChhhh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFP-------YCANVYDL-AVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~-------~~~~l~el-~~~aDiv~~~~p~t~~t~  145 (223)
                      ++|.|+|+|.+|+.+|+.|...|.+|.+++++++...      +..       ....+++. +.++|+|++++|....+.
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~   80 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVNL   80 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHHH
Confidence            4699999999999999999999999999998765321      111       11223443 678999999998554332


Q ss_pred             hccCHHHHhcCCCCcEEEEc
Q 035615          146 HIINKDVMAELGKGGMIINV  165 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~  165 (223)
                      .+  ....+.+.+...+|-.
T Consensus        81 ~~--~~~a~~~~~~~~iia~   98 (218)
T 3l4b_C           81 FI--AQLVMKDFGVKRVVSL   98 (218)
T ss_dssp             HH--HHHHHHTSCCCEEEEC
T ss_pred             HH--HHHHHHHcCCCeEEEE
Confidence            22  3333433344444433

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.70  E-value=3.9e-05  Score=65.53  Aligned_cols=108  Identities=13%  Similarity=0.152  Sum_probs=67.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC--------C------cc-cccChhhhhcCCcEEEEeccCCh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV--------L------FP-YCANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~--------~------~~-~~~~l~el~~~aDiv~~~~p~t~  142 (223)
                      ++|+|||.|.+|..+|..+...|.  +|..+|++.....        .      .. ...+ .+.++.||+|+++++...
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~   79 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ   79 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence            489999999999999999998898  9999998754211        0      00 1123 356889999999995322


Q ss_pred             h-----------hhhccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEE
Q 035615          143 Q-----------THHIIN--KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGV  188 (223)
Q Consensus       143 ~-----------t~~li~--~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a  188 (223)
                      .           +..++.  .+.+....|++++|+++.+.-+....+.+.....++.|.
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           80 KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence            1           111110  122333468899999876554444445555544555544

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.68  E-value=0.0001  Score=63.28  Aligned_cols=106  Identities=14%  Similarity=0.121  Sum_probs=70.7

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCC---CC----------Cc----ccccCh---hhhhcCCc
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRP---SV----------LF----PYCANV---YDLAVNSD  132 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~---~~----------~~----~~~~~l---~el~~~aD  132 (223)
                      +.+++|+++.|+|.|.+|++++..|...|+ +|.+++|+.+.   .+          +.    ....++   .+.+.++|
T Consensus       143 ~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~D  222 (312)
T 3t4e_A          143 GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASAD  222 (312)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCS
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCce
Confidence            345789999999999999999999999999 79999998432   11          00    012233   45678899


Q ss_pred             EEEEeccCCh--hhhhcc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          133 VLVVCCALTE--QTHHII--NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       133 iv~~~~p~t~--~t~~li--~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      +|+.++|..-  .....+  +.   ..++++.+++++.-.+. ...-|.+|-+.|
T Consensus       223 iIINaTp~Gm~~~~~~~~~~~~---~~l~~~~~v~D~vY~P~-~T~ll~~A~~~G  273 (312)
T 3t4e_A          223 ILTNGTKVGMKPLENESLIGDV---SLLRPELLVTECVYNPH-MTKLLQQAQQAG  273 (312)
T ss_dssp             EEEECSSTTSTTSTTCCSCCCG---GGSCTTCEEEECCCSSS-SCHHHHHHHHTT
T ss_pred             EEEECCcCCCCCCCCCcccCCH---HHcCCCCEEEEeccCCC-CCHHHHHHHHCC
Confidence            9999998642  111111  32   34678899999876653 333333444443

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.68  E-value=5.3e-05  Score=65.18  Aligned_cols=103  Identities=13%  Similarity=0.107  Sum_probs=64.8

Q ss_pred             CCEEEEEecChHHHHHHHHHH-h-CCCEE-EEEcCCCCCCC------Cc-ccccChhhhhc--CCcEEEEeccCChhhhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQ-A-FGFII-SYNSRRKRPSV------LF-PYCANVYDLAV--NSDVLVVCCALTEQTHH  146 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~-~-~G~~V-~~~~~~~~~~~------~~-~~~~~l~el~~--~aDiv~~~~p~t~~t~~  146 (223)
                      -.+|||||+|.||+..++.++ . -++++ .++|+++....      +. ..+.+++++++  +.|+|++++|.......
T Consensus         8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~   87 (346)
T 3cea_A            8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPEM   87 (346)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHHH
T ss_pred             cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHHH
Confidence            358999999999999999987 5 47775 56788764321      23 34678999986  69999999984432221


Q ss_pred             ccCHHHHhcCCCCcE-EEEc-CCCcccCHHHHHHHHHcC-Cce
Q 035615          147 IINKDVMAELGKGGM-IINV-GRGALIDEKEMLQFLVQG-DIN  186 (223)
Q Consensus       147 li~~~~l~~mk~ga~-lIN~-arg~~vd~~al~~aL~~~-~i~  186 (223)
                           ..+.++.|.. ++.- .-...-+.+.|.++.++. ++.
T Consensus        88 -----~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~  125 (346)
T 3cea_A           88 -----TIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQI  125 (346)
T ss_dssp             -----HHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSC
T ss_pred             -----HHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCe
Confidence                 2233455553 3321 111223344567776666 554

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.67  E-value=9.2e-05  Score=63.91  Aligned_cols=88  Identities=15%  Similarity=0.155  Sum_probs=59.8

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCC-----------------cccccChhhhhcCCcEEEEec--
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVL-----------------FPYCANVYDLAVNSDVLVVCC--  138 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~-----------------~~~~~~l~el~~~aDiv~~~~--  138 (223)
                      .++|+|||.|.||..+|..+...|+ +|..+|++.+..++                 .....++ +.++.||+|++++  
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~   92 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGV   92 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCC
Confidence            3699999999999999999998898 99999998654221                 1112456 6789999999998  


Q ss_pred             cCChh---------hhhccC--HHHHhcCCCCcEEEEcCC
Q 035615          139 ALTEQ---------THHIIN--KDVMAELGKGGMIINVGR  167 (223)
Q Consensus       139 p~t~~---------t~~li~--~~~l~~mk~ga~lIN~ar  167 (223)
                      |..+.         +..++.  .+.+....|++++|+++.
T Consensus        93 p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN  132 (328)
T 2hjr_A           93 PRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN  132 (328)
T ss_dssp             CCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            43221         111110  112223347899998765

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.67  E-value=4.3e-05  Score=66.31  Aligned_cols=65  Identities=18%  Similarity=0.080  Sum_probs=49.7

Q ss_pred             cCCCEEEEEecChHHH-HHHHHHHhC-CCEEE-EEcCCCCCCC------CcccccChhhhhc--CCcEEEEeccCC
Q 035615           77 LGGMQVGIVRLGNIGS-EVLNRLQAF-GFIIS-YNSRRKRPSV------LFPYCANVYDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~-~~a~~l~~~-G~~V~-~~~~~~~~~~------~~~~~~~l~el~~--~aDiv~~~~p~t  141 (223)
                      .+-.+|||||+|.||+ .+++.++.. ++++. ++|+++....      +...+.+++++++  +.|+|++++|..
T Consensus        25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~  100 (350)
T 3rc1_A           25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAV  100 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGG
T ss_pred             CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcH
Confidence            3456899999999999 788888877 78865 6788764332      3344689999986  589999999854

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.67  E-value=6.1e-05  Score=64.40  Aligned_cols=102  Identities=12%  Similarity=0.195  Sum_probs=62.5

Q ss_pred             CEEEEEecChHHH-HHHHHHHhC-CCEEEEEcCCCCCCC------Cccc-ccChhhhh-cCCcEEEEeccCChhhhhccC
Q 035615           80 MQVGIVRLGNIGS-EVLNRLQAF-GFIISYNSRRKRPSV------LFPY-CANVYDLA-VNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        80 ~~vgIiG~G~iG~-~~a~~l~~~-G~~V~~~~~~~~~~~------~~~~-~~~l~el~-~~aDiv~~~~p~t~~t~~li~  149 (223)
                      .+|||||+|.||+ .+++.++.. ++++.++|+++....      +... +.+..+++ .+.|+|++++|...... +  
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~-~--   79 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHST-L--   79 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHH-H--
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHH-H--
Confidence            4799999999998 488888765 778778888765322      2222 33444555 78999999998432211 1  


Q ss_pred             HHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCce
Q 035615          150 KDVMAELGKGG-MIINV-GRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       150 ~~~l~~mk~ga-~lIN~-arg~~vd~~al~~aL~~~~i~  186 (223)
                        ..+.++.|. +++.- .--.+-+.+.|.++.++.++.
T Consensus        80 --~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (323)
T 1xea_A           80 --AAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  116 (323)
T ss_dssp             --HHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             --HHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence              112334453 55542 122333455677777766654

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.66  E-value=8.7e-05  Score=64.01  Aligned_cols=62  Identities=21%  Similarity=0.356  Sum_probs=49.2

Q ss_pred             CEEEEEecChHHHHHHHHHHhC-CCEEE-EEcCCCCCCC------Cc-ccccChhhhhc--CCcEEEEeccCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF-GFIIS-YNSRRKRPSV------LF-PYCANVYDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~------~~-~~~~~l~el~~--~aDiv~~~~p~t  141 (223)
                      .+|||||+|.||+..++.+... ++++. ++|+++....      +. ..+.+++++++  +.|+|++++|..
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   75 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTN   75 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGG
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCc
Confidence            4899999999999999999875 67765 6788765432      22 24689999998  799999999854

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.64  E-value=1.9e-05  Score=65.61  Aligned_cols=94  Identities=17%  Similarity=0.127  Sum_probs=63.2

Q ss_pred             HHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCC-------------------C
Q 035615           56 GNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRP-------------------S  115 (223)
Q Consensus        56 ~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~-------------------~  115 (223)
                      |.++++-..|...    ....|++++|.|||.|.+|..+++.|...|. ++.++|+..-.                   .
T Consensus        12 y~Rq~~l~~~g~~----~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka   87 (249)
T 1jw9_B           12 YNRQIILRGFDFD----GQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKV   87 (249)
T ss_dssp             THHHHTSTTTHHH----HHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHH
T ss_pred             hhheecccccCHH----HHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHH
Confidence            3444444456532    1245899999999999999999999999998 78888877511                   0


Q ss_pred             C-----------Ccc--c----c--cChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615          116 V-----------LFP--Y----C--ANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA  154 (223)
Q Consensus       116 ~-----------~~~--~----~--~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~  154 (223)
                      +           ...  .    .  .+++++++++|+|+.+++ +.+++.++++...+
T Consensus        88 ~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~  144 (249)
T 1jw9_B           88 ESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFA  144 (249)
T ss_dssp             HHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCcEEEEEeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHH
Confidence            0           000  0    0  134567788999988885 56777777665544

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=97.63  E-value=0.00022  Score=60.44  Aligned_cols=104  Identities=13%  Similarity=0.124  Sum_probs=70.7

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHhCCCEEE-EEcCCC--CCCCCcccccChhhhhc--CCcEEEEeccCChhhhhccCHHH
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQAFGFIIS-YNSRRK--RPSVLFPYCANVYDLAV--NSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~-~~~~~~--~~~~~~~~~~~l~el~~--~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      .++|+|+|. |++|+.+++.++..|++++ .+++..  ....+...+.+++|+.+  ..|++++++|. +.+...+. +.
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~-~~~~~~~~-ea   84 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPA-PAAADAAL-EA   84 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCH-HHHHHHHH-HH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCceECCEEeeCCHHHHhhcCCCCEEEEecCH-HHHHHHHH-HH
Confidence            578999998 9999999999998899854 566654  22234555778999988  89999999983 33344432 23


Q ss_pred             HhcCCCCcEEEEcCCCc-ccCHHHHHHHHHcCCce
Q 035615          153 MAELGKGGMIINVGRGA-LIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~-~vd~~al~~aL~~~~i~  186 (223)
                      .+ .+-. .+|..+.|= ..+++.+.++.++..+.
T Consensus        85 ~~-~Gi~-~vVi~t~G~~~~~~~~l~~~a~~~gi~  117 (288)
T 1oi7_A           85 AH-AGIP-LIVLITEGIPTLDMVRAVEEIKALGSR  117 (288)
T ss_dssp             HH-TTCS-EEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             HH-CCCC-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            32 1222 255555552 23456888888876664

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=97.63  E-value=0.00011  Score=54.47  Aligned_cols=99  Identities=15%  Similarity=0.149  Sum_probs=73.2

Q ss_pred             CEEEEEec----ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhc
Q 035615           80 MQVGIVRL----GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE  155 (223)
Q Consensus        80 ~~vgIiG~----G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~  155 (223)
                      ++|+|||.    ++.|..+.+.|+..|++|+-+++......+...+.++.++-. -|++++++| .+.+..++. +.. .
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~-vDlavi~~p-~~~v~~~v~-e~~-~   80 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEG-VDTVTLYIN-PQNQLSEYN-YIL-S   80 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTT-CCEEEECSC-HHHHGGGHH-HHH-H
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCC-CCEEEEEeC-HHHHHHHHH-HHH-h
Confidence            67999996    679999999999999999999988766666666788888887 999999998 334555553 333 2


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          156 LGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       156 mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      +...+++++.  |-  .++.+.+..++..++
T Consensus        81 ~g~k~v~~~~--G~--~~~e~~~~a~~~Gir  107 (122)
T 3ff4_A           81 LKPKRVIFNP--GT--ENEELEEILSENGIE  107 (122)
T ss_dssp             HCCSEEEECT--TC--CCHHHHHHHHHTTCE
T ss_pred             cCCCEEEECC--CC--ChHHHHHHHHHcCCe
Confidence            3444666554  32  356777777777776

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.61  E-value=0.0001  Score=64.62  Aligned_cols=62  Identities=23%  Similarity=0.280  Sum_probs=47.4

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-C---cc---ccc---ChhhhhcCCcEEEEe
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-L---FP---YCA---NVYDLAVNSDVLVVC  137 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~---~~---~~~---~l~el~~~aDiv~~~  137 (223)
                      -+.|+||+|+|.|.+|+.+++.++.+|++|+++|+.+.... .   ..   .+.   .+.++++++|+|+..
T Consensus        11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~   82 (389)
T 3q2o_A           11 ILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYE   82 (389)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEES
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeec
Confidence            47899999999999999999999999999999987654321 1   00   122   366788899998553

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.61  E-value=0.00015  Score=62.49  Aligned_cols=59  Identities=15%  Similarity=0.093  Sum_probs=46.5

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC---------------C--cccccChhhhhcCCcEEEEec
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV---------------L--FPYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~---------------~--~~~~~~l~el~~~aDiv~~~~  138 (223)
                      .++|+|||.|.+|..+|..+...|+ +|..+|++.+..+               .  .....+. +.++.||+|++++
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence            3689999999999999999998888 8999998765321               0  1112456 7789999999998

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=97.59  E-value=0.0002  Score=61.39  Aligned_cols=63  Identities=11%  Similarity=0.158  Sum_probs=49.0

Q ss_pred             CCEEEEEecChHHH-HHHHHHHhCCCEE-EEEcCCCCCCC-------CcccccChhhhhc--CCcEEEEeccCC
Q 035615           79 GMQVGIVRLGNIGS-EVLNRLQAFGFII-SYNSRRKRPSV-------LFPYCANVYDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~G~iG~-~~a~~l~~~G~~V-~~~~~~~~~~~-------~~~~~~~l~el~~--~aDiv~~~~p~t  141 (223)
                      -.+|||||+|.+|. .+++.++..++++ .++|+++....       ....+.+++++++  +.|+|++++|..
T Consensus         4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   77 (336)
T 2p2s_A            4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPC   77 (336)
T ss_dssp             CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGG
T ss_pred             ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChh
Confidence            35899999999996 6777777678986 57888876542       2344688999986  689999999854

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.56  E-value=9.7e-05  Score=62.93  Aligned_cols=93  Identities=10%  Similarity=0.149  Sum_probs=59.4

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC--------Cc------c-cccChhhhhcCCcEEEEeccC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV--------LF------P-YCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~--------~~------~-~~~~l~el~~~aDiv~~~~p~  140 (223)
                      ..++|+|||.|.||..++..|...|.  +|..+|++.....        ..      . ...+-.+.++.+|+|+++++.
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v~~   85 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGP   85 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECCCC
Confidence            34789999999999999999998898  9999998753211        00      0 011123567899999999953


Q ss_pred             Chh---hh--------hccC--HHHHhcCCCCcEEEEcCCCcc
Q 035615          141 TEQ---TH--------HIIN--KDVMAELGKGGMIINVGRGAL  170 (223)
Q Consensus       141 t~~---t~--------~li~--~~~l~~mk~ga~lIN~arg~~  170 (223)
                      ...   ++        .++.  .+.+....+++++|+++.|--
T Consensus        86 ~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~  128 (319)
T 1lld_A           86 RQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD  128 (319)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchH
Confidence            211   00        1110  112222367899999876643

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.56  E-value=4.6e-05  Score=67.89  Aligned_cols=84  Identities=17%  Similarity=0.106  Sum_probs=58.0

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccc-------cccChhhh-hcCCcEEEEeccCChhhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFP-------YCANVYDL-AVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~-------~~~~l~el-~~~aDiv~~~~p~t~~t~  145 (223)
                      +.+|.|+|+|++|+.+++.|+..|.+|+++|+++....     +..       ....|.++ +.++|+|+++++....+.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~   83 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL   83 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence            45699999999999999999999999999998865321     111       11223343 678999999998654443


Q ss_pred             hccCHHHHhcCCCCcEEEE
Q 035615          146 HIINKDVMAELGKGGMIIN  164 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN  164 (223)
                      .+  ....+.+.+...+|-
T Consensus        84 ~i--~~~ar~~~p~~~Iia  100 (413)
T 3l9w_A           84 QL--TEMVKEHFPHLQIIA  100 (413)
T ss_dssp             HH--HHHHHHHCTTCEEEE
T ss_pred             HH--HHHHHHhCCCCeEEE
Confidence            33  345555666644444

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.54  E-value=6.6e-05  Score=65.46  Aligned_cols=63  Identities=14%  Similarity=0.111  Sum_probs=47.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----------CcccccChhhhhcCCcEEEEeccCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----------LFPYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----------~~~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      +.++|+|+|.|.+|+.+++.|.. ..+|.+.+++.+..+           ++....++.++++++|+|+.++|..
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~   88 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF   88 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred             CccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence            35689999999999999999976 478888887653221           1122345778899999999999843

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.54  E-value=0.00025  Score=59.59  Aligned_cols=102  Identities=12%  Similarity=0.222  Sum_probs=68.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhh----hh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQT----HH  146 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t----~~  146 (223)
                      .++++.|+|.|.+|++++..|...|+ +|.+++|+.++..      +.....++.  +.++|+|+.++|..-..    ..
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~  195 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMD  195 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCC
Confidence            47899999999999999999999998 6999999865422      111111222  46899999999965321    11


Q ss_pred             -ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          147 -IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       147 -li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                       .+..+.   ++++.+++|+.-.+. +. .|.+..++....
T Consensus       196 ~~~~~~~---l~~~~~v~DlvY~P~-~T-~ll~~A~~~G~~  231 (271)
T 1npy_A          196 LAFPKAF---IDNASVAFDVVAMPV-ET-PFIRYAQARGKQ  231 (271)
T ss_dssp             CSSCHHH---HHHCSEEEECCCSSS-SC-HHHHHHHHTTCE
T ss_pred             CCCCHHH---cCCCCEEEEeecCCC-CC-HHHHHHHHCCCE
Confidence             134333   456889999987553 33 555555554444

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.53  E-value=0.00016  Score=62.93  Aligned_cols=62  Identities=13%  Similarity=0.226  Sum_probs=47.8

Q ss_pred             CEEEEEecChHHHH-HHHHHHhC-CCEEE-EEcCCCCCCC----CcccccChhhhhc--CCcEEEEeccCC
Q 035615           80 MQVGIVRLGNIGSE-VLNRLQAF-GFIIS-YNSRRKRPSV----LFPYCANVYDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~~----~~~~~~~l~el~~--~aDiv~~~~p~t  141 (223)
                      .+|||||+|.||+. .++.++.. ++++. ++|++++...    +...+.+++++++  +.|+|++++|..
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   78 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNA   78 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHCTTSEEESCHHHHHTCTTCSEEEECSCGG
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCcEECCHHHHhcCCCCCEEEEeCChH
Confidence            58999999999997 67777765 77865 6787764321    3345789999998  789999999854

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=97.52  E-value=0.00029  Score=60.21  Aligned_cols=107  Identities=12%  Similarity=0.118  Sum_probs=74.1

Q ss_pred             ccCCCEEEEE-ec-ChHHHHHHHHHHhCCCEEE-EEcCCCC--CCCCcccccChhhhhc--CCcEEEEeccCChhhhhcc
Q 035615           76 KLGGMQVGIV-RL-GNIGSEVLNRLQAFGFIIS-YNSRRKR--PSVLFPYCANVYDLAV--NSDVLVVCCALTEQTHHII  148 (223)
Q Consensus        76 ~l~g~~vgIi-G~-G~iG~~~a~~l~~~G~~V~-~~~~~~~--~~~~~~~~~~l~el~~--~aDiv~~~~p~t~~t~~li  148 (223)
                      -+..+++.|| |+ |++|+.+++.++..|++++ .+++...  ...+...+.+++|+.+  ..|++++++|.. .....+
T Consensus        10 l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~vD~avI~vP~~-~~~~~~   88 (305)
T 2fp4_A           10 YVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPP-FAAAAI   88 (305)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHH-HHHHHH
T ss_pred             HhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcceECCeeeechHHHhhhcCCCCEEEEecCHH-HHHHHH
Confidence            3567889999 98 9999999999999999954 5666532  2235555778999988  899999999832 333343


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcC-Cce
Q 035615          149 NKDVMAELGKGGMIINVGRGAL-IDEKEMLQFLVQG-DIN  186 (223)
Q Consensus       149 ~~~~l~~mk~ga~lIN~arg~~-vd~~al~~aL~~~-~i~  186 (223)
                      . +..+ ..- ..+|+.+-|-. -|+..+.+..++. .+.
T Consensus        89 ~-e~i~-~Gi-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~  125 (305)
T 2fp4_A           89 N-EAID-AEV-PLVVCITEGIPQQDMVRVKHRLLRQGKTR  125 (305)
T ss_dssp             H-HHHH-TTC-SEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             H-HHHH-CCC-CEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence            2 2332 122 24567777743 3445788888887 665

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.51  E-value=0.00078  Score=57.67  Aligned_cols=99  Identities=10%  Similarity=0.203  Sum_probs=72.5

Q ss_pred             ccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCC-C---------CcccccChhhhhcCCcEEEEec----cC
Q 035615           76 KLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPS-V---------LFPYCANVYDLAVNSDVLVVCC----AL  140 (223)
Q Consensus        76 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~---------~~~~~~~l~el~~~aDiv~~~~----p~  140 (223)
                      .+.|+||+++| .+++.++.+..+..+|++|.+..|..-.. .         .+....+++|.++.+|+|..-.    ..
T Consensus       151 ~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~  230 (309)
T 4f2g_A          151 PIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGF  230 (309)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC-----
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcc
Confidence            37899999999 67899999999999999999887643211 1         1123578999999999998743    10


Q ss_pred             ---Ch-----hhhhccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 035615          141 ---TE-----QTHHIINKDVMAELGKGGMIINVG---RGALIDEK  174 (223)
Q Consensus       141 ---t~-----~t~~li~~~~l~~mk~ga~lIN~a---rg~~vd~~  174 (223)
                         .+     ....-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       231 e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~e  275 (309)
T 4f2g_A          231 EAENEARKRAFADWCVDEEMMSHANSDALFMHCLPAHRGEEVTAG  275 (309)
T ss_dssp             -------CCSGGGGCBCHHHHTTSCTTCEEEECSSCCBTTTBCHH
T ss_pred             hhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCCCCCCCceecHH
Confidence               00     123567999999999999999887   56555443

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.47  E-value=9.2e-05  Score=60.60  Aligned_cols=90  Identities=18%  Similarity=0.192  Sum_probs=59.7

Q ss_pred             CCCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------Cccc-ccC-hhhhhcCCcEEEEeccCC
Q 035615           71 YPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------LFPY-CAN-VYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        71 ~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~~-~~~-l~el~~~aDiv~~~~p~t  141 (223)
                      ++...++.|++|.|||.|.+|..-++.|...|++|.++++...+..       .... ... .++.+..+|+|+.+.. .
T Consensus        23 ~Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~-d  101 (223)
T 3dfz_A           23 YTVMLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATN-D  101 (223)
T ss_dssp             CEEEECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCC-C
T ss_pred             cccEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCC-C
Confidence            4566789999999999999999999999999999999988654210       1110 011 1345678998887654 3


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcC
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      ++.    |.......+ -.++||+.
T Consensus       102 ~~~----N~~I~~~ak-~gi~VNvv  121 (223)
T 3dfz_A          102 QAV----NKFVKQHIK-NDQLVNMA  121 (223)
T ss_dssp             THH----HHHHHHHSC-TTCEEEC-
T ss_pred             HHH----HHHHHHHHh-CCCEEEEe
Confidence            332    233333344 45677764

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.46  E-value=7.9e-05  Score=64.82  Aligned_cols=63  Identities=13%  Similarity=0.070  Sum_probs=50.0

Q ss_pred             CCEEEEEecChHHHHHHHHHHhC-CCEEE-EEcCCCCCC-----CCcccccChhhhhc--CCcEEEEeccCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAF-GFIIS-YNSRRKRPS-----VLFPYCANVYDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~-----~~~~~~~~l~el~~--~aDiv~~~~p~t  141 (223)
                      ..+|||||+|.||+..++.++.. ++++. ++|+++...     .+...+.+++++++  +.|+|++++|..
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~   76 (359)
T 3e18_A            5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPND   76 (359)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGG
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcH
Confidence            46899999999999999999876 77865 678776432     23445789999997  789999999854

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=97.46  E-value=0.0002  Score=62.18  Aligned_cols=102  Identities=13%  Similarity=0.101  Sum_probs=67.0

Q ss_pred             CEEEEEecChHHHHHHHHHHhC-CCEE-EEEcCCCCCCC------C----cccccChhhhhc--CCcEEEEeccCChhhh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF-GFII-SYNSRRKRPSV------L----FPYCANVYDLAV--NSDVLVVCCALTEQTH  145 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~-G~~V-~~~~~~~~~~~------~----~~~~~~l~el~~--~aDiv~~~~p~t~~t~  145 (223)
                      .+|||||+|.||+..++.+... ++++ .++|+++....      +    ...+.+++++++  +.|+|++++|......
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   86 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   86 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHHH
Confidence            5899999999999999988875 6675 46787764321      2    234678999986  5999999998432211


Q ss_pred             hccCHHHHhcCCCCcEEEEcC--CCcccCHHHHHHHHHcCCce
Q 035615          146 HIINKDVMAELGKGGMIINVG--RGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~a--rg~~vd~~al~~aL~~~~i~  186 (223)
                           -....++.|.-++.--  --.+-+.+.|.++.++.++.
T Consensus        87 -----~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~  124 (362)
T 1ydw_A           87 -----WAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  124 (362)
T ss_dssp             -----HHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             -----HHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence                 1223456665444321  22333456788888777665

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=97.45  E-value=0.00013  Score=59.44  Aligned_cols=62  Identities=13%  Similarity=0.064  Sum_probs=42.5

Q ss_pred             CCEEEEEecChHHHHHHHH--HHhCCCEEE-EEcCCCCCCC----C--cccccChhhhhcCCcEEEEeccC
Q 035615           79 GMQVGIVRLGNIGSEVLNR--LQAFGFIIS-YNSRRKRPSV----L--FPYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~--l~~~G~~V~-~~~~~~~~~~----~--~~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      .++++|||.|++|+.+++.  ....|+++. ++|.++....    +  .....++++++++.|++++++|.
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs  155 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPA  155 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCc
Confidence            3579999999999999994  445688865 6777766543    1  11356788888777999999994

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=97.45  E-value=0.0011  Score=57.51  Aligned_cols=98  Identities=12%  Similarity=0.084  Sum_probs=73.3

Q ss_pred             cCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEecc
Q 035615           77 LGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        77 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      +.|+||++|| .+++.++.+..+..+|++|.+..|..-...              +  +....+++|.++.+|+|..-.=
T Consensus       177 l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~w  256 (340)
T 4ep1_A          177 FKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVW  256 (340)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecCc
Confidence            7899999999 578999999999999999998877543221              1  2235789999999999987542


Q ss_pred             CC------hh-----hhhccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 035615          140 LT------EQ-----THHIINKDVMAELGKGGMIINVG---RGALIDEK  174 (223)
Q Consensus       140 ~t------~~-----t~~li~~~~l~~mk~ga~lIN~a---rg~~vd~~  174 (223)
                      ..      ++     ...-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       257 ~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~e  305 (340)
T 4ep1_A          257 MSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCLPAHREEEVTGE  305 (340)
T ss_dssp             ------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             cCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCCCCCCCceeCHH
Confidence            11      01     12467999999999999999988   67555544

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=97.44  E-value=0.00018  Score=62.08  Aligned_cols=63  Identities=13%  Similarity=0.303  Sum_probs=45.9

Q ss_pred             CEEEEEecChHHHH-HHH-HHH-hCCCEEE-EEcCCCCCCC------CcccccChhhhhcC--CcEEEEeccCCh
Q 035615           80 MQVGIVRLGNIGSE-VLN-RLQ-AFGFIIS-YNSRRKRPSV------LFPYCANVYDLAVN--SDVLVVCCALTE  142 (223)
Q Consensus        80 ~~vgIiG~G~iG~~-~a~-~l~-~~G~~V~-~~~~~~~~~~------~~~~~~~l~el~~~--aDiv~~~~p~t~  142 (223)
                      .+|||||+|.||+. .+. .+. .-++++. ++|+++....      +...+.+++++++.  .|+|++++|...
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   77 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADS   77 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGG
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHH
Confidence            57999999999996 455 333 3477865 7888765432      23346889999976  899999998543

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=97.43  E-value=0.0013  Score=56.09  Aligned_cols=100  Identities=14%  Similarity=0.156  Sum_probs=76.2

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCC-------cccccChhhhhcCCcEEEEeccC-------
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVL-------FPYCANVYDLAVNSDVLVVCCAL-------  140 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~-------~~~~~~l~el~~~aDiv~~~~p~-------  140 (223)
                      .+.|.+|+++|= +++.++.+..+..+|++|.+..|..-....       .....+++|.++.+|+|..-.=.       
T Consensus       151 ~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~  230 (301)
T 2ef0_A          151 GLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAE  230 (301)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC-------
T ss_pred             CcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccc
Confidence            378999999995 899999999999999999988876533221       33467899999999999884420       


Q ss_pred             -Ch--h--hhhccCHHHHhcCCCCcEEEEcC---CCcccCHHH
Q 035615          141 -TE--Q--THHIINKDVMAELGKGGMIINVG---RGALIDEKE  175 (223)
Q Consensus       141 -t~--~--t~~li~~~~l~~mk~ga~lIN~a---rg~~vd~~a  175 (223)
                       ..  +  ...-++++.++.+|++++|.-+.   ||.=|+.+-
T Consensus       231 ~~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~eV  273 (301)
T 2ef0_A          231 REKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEEA  273 (301)
T ss_dssp             -CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCHHH
T ss_pred             hhHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccCHHH
Confidence             01  1  13567999999999999999998   566555543

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=97.42  E-value=0.00062  Score=61.02  Aligned_cols=105  Identities=15%  Similarity=0.139  Sum_probs=71.8

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCC------CCC---------------CCc---------ccccCh
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRK------RPS---------------VLF---------PYCANV  124 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~------~~~---------------~~~---------~~~~~l  124 (223)
                      .+++|+||.|=|+|++|+.+|+.|...|.+|+..+.+.      ...               .+.         ..+.+-
T Consensus       231 ~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~~  310 (450)
T 4fcc_A          231 MGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLEG  310 (450)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEET
T ss_pred             CCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEecC
Confidence            35889999999999999999999999999987654221      000               000         001122


Q ss_pred             hhhh-cCCcEEEEeccCChhhhhccCHHHHhcCCCC--cEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          125 YDLA-VNSDVLVVCCALTEQTHHIINKDVMAELGKG--GMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       125 ~el~-~~aDiv~~~~p~t~~t~~li~~~~l~~mk~g--a~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      ++++ ..||+.+-|.     +.+.|+.+..+.++..  .++++-+.+.+-.+ + .+.|.++.|.
T Consensus       311 ~~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~e-A-~~iL~~rGIl  368 (450)
T 4fcc_A          311 QQPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPTTIE-A-TELFQQAGVL  368 (450)
T ss_dssp             CCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-H-HHHHHHTTCE
T ss_pred             cccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCCCHH-H-HHHHHHCCCE
Confidence            2333 3799887765     5677998888888753  57888888886544 3 3667777775

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=97.41  E-value=0.00058  Score=58.61  Aligned_cols=109  Identities=17%  Similarity=0.137  Sum_probs=64.6

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCCC-------c-------ccccChhhhhcCCcEEEEeccCCh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSVL-------F-------PYCANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~-------~-------~~~~~l~el~~~aDiv~~~~p~t~  142 (223)
                      .++|+|||.|.+|..++..+...|.  +|..+|...++.++       .       ....+..+.++.||+|+++.+...
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~   86 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR   86 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            4689999999999999999988887  89999987654321       0       001123566899999999987432


Q ss_pred             hhhhc------------cC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCceEE
Q 035615          143 QTHHI------------IN--KDVMAELGKGGMIINVGRGALIDEKEMLQF--LVQGDINGV  188 (223)
Q Consensus       143 ~t~~l------------i~--~~~l~~mk~ga~lIN~arg~~vd~~al~~a--L~~~~i~~a  188 (223)
                       ..+.            +.  .+.+....|++++|+++.--=+....+.+.  +...++.|.
T Consensus        87 -k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~~k~s~~p~~rviG~  147 (318)
T 1y6j_A           87 -KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGS  147 (318)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             -CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHcCCCHHHEecc
Confidence             1111            10  122333368999999743222233333333  334466655

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.41  E-value=0.00027  Score=57.29  Aligned_cols=92  Identities=15%  Similarity=0.037  Sum_probs=61.8

Q ss_pred             cCCCEEEEEe-cChHHHHHHHHHHhCC-CEEEEEcCCCCCCCC------------cccccChhhhhcCCcEEEEeccCCh
Q 035615           77 LGGMQVGIVR-LGNIGSEVLNRLQAFG-FIISYNSRRKRPSVL------------FPYCANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        77 l~g~~vgIiG-~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~------------~~~~~~l~el~~~aDiv~~~~p~t~  142 (223)
                      ...|+|.|.| .|.||+.+++.|...| ++|++++|++.....            .....+++++++.+|+|+.+.....
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~  100 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED  100 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTT
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCc
Confidence            4468999999 6999999999999999 899999887654321            1112345678899999998876432


Q ss_pred             hhhhccCHHHHhcCCC--CcEEEEcCCCcc
Q 035615          143 QTHHIINKDVMAELGK--GGMIINVGRGAL  170 (223)
Q Consensus       143 ~t~~li~~~~l~~mk~--ga~lIN~arg~~  170 (223)
                      ....  .+..+..|+.  ...||++|....
T Consensus       101 ~~~~--~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A          101 LDIQ--ANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             HHHH--HHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             hhHH--HHHHHHHHHHcCCCEEEEEeccee
Confidence            2111  1234444432  247888887543

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=97.40  E-value=0.00023  Score=67.76  Aligned_cols=114  Identities=11%  Similarity=0.083  Sum_probs=79.3

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------------C------cccccChhhhhcCCc
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------------L------FPYCANVYDLAVNSD  132 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------------~------~~~~~~l~el~~~aD  132 (223)
                      =++|||||.|.||+.+|..+...|++|+.+|++++...                    .      .....+..+.+++||
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD  395 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELSTVD  395 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGGSCS
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHhhCC
Confidence            36999999999999999999999999999998764211                    0      001222234478999


Q ss_pred             EEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCC
Q 035615          133 VLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEN  195 (223)
Q Consensus       133 iv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~  195 (223)
                      +|+=++|.+-+.+.-+-++.=+.++++++|-....+  +....|.+.++. .-+..++--|.+
T Consensus       396 lVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~~-p~r~ig~HFfnP  455 (742)
T 3zwc_A          396 LVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTDR-PQLVIGTHFFSP  455 (742)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSSC-GGGEEEEECCSS
T ss_pred             EEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcCC-ccccccccccCC
Confidence            999999988777765556666778999988743333  445556666543 334456665543

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.38  E-value=0.00051  Score=54.86  Aligned_cols=88  Identities=15%  Similarity=0.161  Sum_probs=60.1

Q ss_pred             CCEEEEEe-cChHHHHHHHHHH-hCCCEEEEEcCCCC-CCC-------Cc-------ccccChhhhhcCCcEEEEeccCC
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQ-AFGFIISYNSRRKR-PSV-------LF-------PYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~-~~G~~V~~~~~~~~-~~~-------~~-------~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      .|+|.|.| .|.||+.+++.|. ..|++|++.+|++. ...       ..       ....+++++++.+|+|+.+....
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~   84 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES   84 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC
Confidence            36799999 5999999999999 89999999988765 221       11       11234567889999999888643


Q ss_pred             hhhhhccCHHHHhcCCC-C-cEEEEcCCCcc
Q 035615          142 EQTHHIINKDVMAELGK-G-GMIINVGRGAL  170 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~-g-a~lIN~arg~~  170 (223)
                       ...   ....++.|++ + ..||++|....
T Consensus        85 -n~~---~~~~~~~~~~~~~~~iv~iSs~~~  111 (221)
T 3r6d_A           85 -GSD---MASIVKALSRXNIRRVIGVSMAGL  111 (221)
T ss_dssp             -HHH---HHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             -Chh---HHHHHHHHHhcCCCeEEEEeecee
Confidence             111   3444455542 2 36888775443

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=97.37  E-value=0.00049  Score=59.46  Aligned_cols=64  Identities=14%  Similarity=0.183  Sum_probs=48.7

Q ss_pred             CCEEEEEecChHHHH-HHHHHHhC-CCEEE-EEcCCCCCC----CCcccccChhhhhcC--CcEEEEeccCCh
Q 035615           79 GMQVGIVRLGNIGSE-VLNRLQAF-GFIIS-YNSRRKRPS----VLFPYCANVYDLAVN--SDVLVVCCALTE  142 (223)
Q Consensus        79 g~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~----~~~~~~~~l~el~~~--aDiv~~~~p~t~  142 (223)
                      -.+|||||+|.||+. .++.++.. ++++. ++|+++...    .+...+.++++++..  .|+|++++|...
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~   79 (352)
T 3kux_A            7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDT   79 (352)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTTT
T ss_pred             CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCChHH
Confidence            358999999999997 77777766 77865 678765432    133457899999975  899999998653

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=97.37  E-value=0.00039  Score=59.70  Aligned_cols=88  Identities=19%  Similarity=0.265  Sum_probs=59.7

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCCC---------------cccc-cChhhhhcCCcEEEEeccCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSVL---------------FPYC-ANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~---------------~~~~-~~l~el~~~aDiv~~~~p~t  141 (223)
                      ++|+|||.|.||..+|..+...|.  ++..+|+.+...++               .... .+..+.++.||+|+++.+..
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~   80 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP   80 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence            589999999999999999987776  89999988754220               0111 34567899999999997533


Q ss_pred             hh---hh-hcc--C-------HHHHhcCCCCcEEEEcCC
Q 035615          142 EQ---TH-HII--N-------KDVMAELGKGGMIINVGR  167 (223)
Q Consensus       142 ~~---t~-~li--~-------~~~l~~mk~ga~lIN~ar  167 (223)
                      ..   ++ .++  |       .+.+....|.+++++++.
T Consensus        81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN  119 (314)
T 3nep_X           81 RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN  119 (314)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred             CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence            11   11 111  1       123444578899999984

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=97.37  E-value=0.00017  Score=64.97  Aligned_cols=101  Identities=7%  Similarity=0.147  Sum_probs=67.7

Q ss_pred             CCCEEEEEecChH--HHHHHHHHHh----CCCEEEEEcCCCCCCC--------------CcccccChhhhhcCCcEEEEe
Q 035615           78 GGMQVGIVRLGNI--GSEVLNRLQA----FGFIISYNSRRKRPSV--------------LFPYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        78 ~g~~vgIiG~G~i--G~~~a~~l~~----~G~~V~~~~~~~~~~~--------------~~~~~~~l~el~~~aDiv~~~  137 (223)
                      +.++|+|||.|.+  |..+++.+..    .| +|..||+.+...+              ......++++.++.||+|+++
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a   82 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS   82 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence            4579999999997  5788887754    46 9999998763311              122356889999999999999


Q ss_pred             ccCC-----------hhhhhccCH------------------------HHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 035615          138 CALT-----------EQTHHIINK------------------------DVMAELGKGGMIINVGRGALIDEKEMLQF  179 (223)
Q Consensus       138 ~p~t-----------~~t~~li~~------------------------~~l~~mk~ga~lIN~arg~~vd~~al~~a  179 (223)
                      ++..           |...++...                        +.+....|++++||++.---+-..++.+.
T Consensus        83 irvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~k~  159 (450)
T 3fef_A           83 ILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKV  159 (450)
T ss_dssp             CCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHH
T ss_pred             cccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHH
Confidence            9642           222333211                        23344468999999987654444444443

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=97.36  E-value=0.00026  Score=61.90  Aligned_cols=61  Identities=16%  Similarity=0.244  Sum_probs=46.5

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-C---------cccccChhhhhcCCcEEEE
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-L---------FPYCANVYDLAVNSDVLVV  136 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~---------~~~~~~l~el~~~aDiv~~  136 (223)
                      .+.+++|+|+|.|.+|+.+++.++.+|++|+++|+.+.... .         ......+.++++++|+|+.
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~   79 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY   79 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence            46799999999999999999999999999999987654321 0         0011235667888998855

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=97.36  E-value=0.00019  Score=62.29  Aligned_cols=65  Identities=22%  Similarity=0.263  Sum_probs=50.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHH-h-CCCEEE-EEcCCCCCCC------C--cccccChhhhhc--CCcEEEEeccCCh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQ-A-FGFIIS-YNSRRKRPSV------L--FPYCANVYDLAV--NSDVLVVCCALTE  142 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~-~-~G~~V~-~~~~~~~~~~------~--~~~~~~l~el~~--~aDiv~~~~p~t~  142 (223)
                      ...+|||||+|.||+..++.+. . -++++. ++|+++....      +  ...+.+++++++  +.|+|++++|...
T Consensus        22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   99 (357)
T 3ec7_A           22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEA   99 (357)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred             CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHH
Confidence            4568999999999999999988 4 377865 6888876432      2  345789999987  4899999998543

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.35  E-value=0.00015  Score=59.04  Aligned_cols=82  Identities=11%  Similarity=0.011  Sum_probs=54.4

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----Cccc----c---cChhhh-hcCCcEEEEeccCChhhhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LFPY----C---ANVYDL-AVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~~----~---~~l~el-~~~aDiv~~~~p~t~~t~~  146 (223)
                      .+++.|+|+|.+|+.+++.|...|+ |++++++++...    +...    .   ..++++ +.++|.|++++|....+. 
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~-   86 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETI-   86 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHHH-
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHHH-
Confidence            5689999999999999999999999 999998765321    1111    1   223334 789999999988543332 


Q ss_pred             ccCHHHHhcCCCCcEEE
Q 035615          147 IINKDVMAELGKGGMII  163 (223)
Q Consensus       147 li~~~~l~~mk~ga~lI  163 (223)
                       .-....+.+.+...+|
T Consensus        87 -~~~~~a~~~~~~~~ii  102 (234)
T 2aef_A           87 -HCILGIRKIDESVRII  102 (234)
T ss_dssp             -HHHHHHHHHCSSSEEE
T ss_pred             -HHHHHHHHHCCCCeEE
Confidence             2234455566663333

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=97.35  E-value=0.0022  Score=54.78  Aligned_cols=99  Identities=16%  Similarity=0.131  Sum_probs=74.1

Q ss_pred             ccCCCEEEEEecC--hHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEe
Q 035615           76 KLGGMQVGIVRLG--NIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        76 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~  137 (223)
                      .+.|++|+++|=|  ++.++.+..+..+|++|.+..|..-...              +  .....+++|.++.+|+|..-
T Consensus       145 ~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~  224 (307)
T 2i6u_A          145 ALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTD  224 (307)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEec
Confidence            3789999999975  9999999999999999998887543221              1  22367899999999999884


Q ss_pred             ccC-------Ch-----hhhhccCHHHHhcCCCCcEEEEcCC---CcccCHH
Q 035615          138 CAL-------TE-----QTHHIINKDVMAELGKGGMIINVGR---GALIDEK  174 (223)
Q Consensus       138 ~p~-------t~-----~t~~li~~~~l~~mk~ga~lIN~ar---g~~vd~~  174 (223)
                      .=.       .+     ....-++++.++.+|++++|.-+.-   |.=|+.+
T Consensus       225 ~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~e  276 (307)
T 2i6u_A          225 TWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCLPAHRGDEITDA  276 (307)
T ss_dssp             CSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHH
T ss_pred             ceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCCCCCCCcccCHh
Confidence            420       01     1235679999999999999999874   5544443

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.35  E-value=0.00014  Score=65.77  Aligned_cols=69  Identities=14%  Similarity=0.114  Sum_probs=49.0

Q ss_pred             CccccCCCEEEEEecChHHHHHHHHHHhC-CCEEEEEcCCCCCCC------Ccc-------cccChhhhhcCCcEEEEec
Q 035615           73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAF-GFIISYNSRRKRPSV------LFP-------YCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~------~~~-------~~~~l~el~~~aDiv~~~~  138 (223)
                      ....+.+++|+|+|.|.+|+.+++.|... |++|.+++|+..+..      +..       ...++.++++.+|+|+.++
T Consensus        17 ~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~t   96 (467)
T 2axq_A           17 IEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLI   96 (467)
T ss_dssp             ------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECS
T ss_pred             cccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECC
Confidence            44568899999999999999999999887 789999998754321      111       0124567788999999999


Q ss_pred             cCC
Q 035615          139 ALT  141 (223)
Q Consensus       139 p~t  141 (223)
                      |..
T Consensus        97 p~~   99 (467)
T 2axq_A           97 PYT   99 (467)
T ss_dssp             CGG
T ss_pred             chh
Confidence            854

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.35  E-value=0.00012  Score=63.23  Aligned_cols=63  Identities=21%  Similarity=0.283  Sum_probs=49.2

Q ss_pred             CEEEEEecChHHHHHHHHHH-h-CCCEEE-EEcCCCCCCC------C--cccccChhhhhcC--CcEEEEeccCCh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQ-A-FGFIIS-YNSRRKRPSV------L--FPYCANVYDLAVN--SDVLVVCCALTE  142 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~-~-~G~~V~-~~~~~~~~~~------~--~~~~~~l~el~~~--aDiv~~~~p~t~  142 (223)
                      .+|||||+|.||+..++.++ . -++++. ++|+++....      +  ...+.++++++++  .|+|++++|...
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   78 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPA   78 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchh
Confidence            48999999999999999998 5 477865 6788765321      2  3457899999976  899999998543

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=97.33  E-value=0.0018  Score=55.78  Aligned_cols=99  Identities=15%  Similarity=0.208  Sum_probs=73.2

Q ss_pred             ccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEec
Q 035615           76 KLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        76 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~~  138 (223)
                      .+.|+||++|| .+++.++.+..+..+|++|.+..|..-...              +  +....+++|.++.+|+|..-.
T Consensus       154 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~  233 (323)
T 3gd5_A          154 RLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDV  233 (323)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEec
Confidence            37899999999 588999999999999999998877543221              1  223578999999999997754


Q ss_pred             cCC--h--------h--hhhccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 035615          139 ALT--E--------Q--THHIINKDVMAELGKGGMIINVG---RGALIDEK  174 (223)
Q Consensus       139 p~t--~--------~--t~~li~~~~l~~mk~ga~lIN~a---rg~~vd~~  174 (223)
                      =-.  .        +  ...-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       234 wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHclPa~Rg~EI~~e  284 (323)
T 3gd5_A          234 WTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDE  284 (323)
T ss_dssp             CC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             eecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCCCCCCCceeCHH
Confidence            111  0        0  12457999999999999999876   56555544

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=97.33  E-value=0.00045  Score=59.00  Aligned_cols=87  Identities=8%  Similarity=0.135  Sum_probs=56.4

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC-----------CcccccChhhhhcCCcEEEEeccCCh---
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV-----------LFPYCANVYDLAVNSDVLVVCCALTE---  142 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-----------~~~~~~~l~el~~~aDiv~~~~p~t~---  142 (223)
                      .++|+|||.|.||..+|..+...|.  +|..+|...+...           ......+. +.++.||+|+++.....   
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~   92 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQ   92 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----C
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCC
Confidence            3799999999999999999887777  8999998764211           11122455 66899999999873210   


Q ss_pred             -------hhhhccCHH---HHhcCCCCcEEEEcCC
Q 035615          143 -------QTHHIINKD---VMAELGKGGMIINVGR  167 (223)
Q Consensus       143 -------~t~~li~~~---~l~~mk~ga~lIN~ar  167 (223)
                             .+..++ .+   .+....|++++|+++.
T Consensus        93 tR~dl~~~n~~i~-~~i~~~i~~~~p~a~iiv~sN  126 (303)
T 2i6t_A           93 SYLDVVQSNVDMF-RALVPALGHYSQHSVLLVASQ  126 (303)
T ss_dssp             CHHHHHHHHHHHH-HHHHHHHHHHTTTCEEEECSS
T ss_pred             CHHHHHHHHHHHH-HHHHHHHHHhCCCeEEEEcCC
Confidence                   111111 12   2233348999999877

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.33  E-value=0.00025  Score=60.78  Aligned_cols=89  Identities=17%  Similarity=0.291  Sum_probs=57.8

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCCC---------------cccccChhhhhcCCcEEEEeccCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSVL---------------FPYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~---------------~~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      -++|+|||.|.||..++..++..|.  +|..+|++.+...+               .....+..+.++.||+|+++.|..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~   85 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN   85 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence            4699999999999999999987665  89999987542210               000123456789999999997643


Q ss_pred             hh-----------hhhccC--HHHHhcCCCCcEEEEcCC
Q 035615          142 EQ-----------THHIIN--KDVMAELGKGGMIINVGR  167 (223)
Q Consensus       142 ~~-----------t~~li~--~~~l~~mk~ga~lIN~ar  167 (223)
                      ..           +..++.  .+.+....|++++++++.
T Consensus        86 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN  124 (316)
T 1ldn_A           86 QKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (316)
T ss_dssp             CCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             CCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            21           001110  122333357889999854

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=97.31  E-value=0.004  Score=55.45  Aligned_cols=104  Identities=15%  Similarity=0.176  Sum_probs=72.5

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEE-EcCCCC----------------CCCC----c-ccccChhhhh-cCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISY-NSRRKR----------------PSVL----F-PYCANVYDLA-VNS  131 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~-~~~~~~----------------~~~~----~-~~~~~l~el~-~~a  131 (223)
                      .+++|+||.|-|+|++|+..|+.|...|.+|+. .|.+..                ...+    + ....+.++++ ..|
T Consensus       217 ~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~~~~  296 (424)
T 3k92_A          217 IKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLEKDC  296 (424)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHHSCC
T ss_pred             CCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCccceeccc
Confidence            468999999999999999999999999999764 444310                0001    0 1122345554 479


Q ss_pred             cEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          132 DVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       132 Div~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      |+++-|..     .+.|+.+....++ -.+++-.+.+.+- . +..+.|.++.|.
T Consensus       297 DIliPcA~-----~n~I~~~~a~~l~-ak~V~EgAN~p~t-~-eA~~iL~~rGI~  343 (424)
T 3k92_A          297 DILVPAAI-----SNQITAKNAHNIQ-ASIVVERANGPTT-I-DATKILNERGVL  343 (424)
T ss_dssp             SEEEECSC-----SSCBCTTTGGGCC-CSEEECCSSSCBC-H-HHHHHHHHTTCE
T ss_pred             cEEeecCc-----ccccChhhHhhcC-ceEEEcCCCCCCC-H-HHHHHHHHCCCE
Confidence            99987763     5678887777775 4678888899864 3 345677777775

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=97.29  E-value=0.001  Score=56.82  Aligned_cols=87  Identities=23%  Similarity=0.195  Sum_probs=57.6

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------C----------cccccChhhhhcCCcEEEEeccCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------L----------FPYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------~----------~~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      ++|+|||.|.+|..++..+...|. +|..+|.+.+..+       .          .....+. +.++.||+|+++.+..
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p   81 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   81 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            689999999999999999998886 8989998764321       0          0112455 6789999999998532


Q ss_pred             hh-----------hhhccC--HHHHhcCCCCcEEEEcCC
Q 035615          142 EQ-----------THHIIN--KDVMAELGKGGMIINVGR  167 (223)
Q Consensus       142 ~~-----------t~~li~--~~~l~~mk~ga~lIN~ar  167 (223)
                      ..           +..++.  .+.+....|++++++++.
T Consensus        82 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN  120 (309)
T 1ur5_A           82 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  120 (309)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC
Confidence            11           011110  122333458899999754

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.29  E-value=0.00023  Score=59.02  Aligned_cols=79  Identities=23%  Similarity=0.226  Sum_probs=56.4

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCC----------------C--------------Cc--cc-
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPS----------------V--------------LF--PY-  120 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~----------------~--------------~~--~~-  120 (223)
                      ..|++++|.|+|.|.+|..+++.|...|. ++.++|+..-..                .              ..  .. 
T Consensus        24 ~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  103 (251)
T 1zud_1           24 QKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL  103 (251)
T ss_dssp             HHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence            46899999999999999999999999998 577776543110                0              00  00 


Q ss_pred             -----ccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615          121 -----CANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA  154 (223)
Q Consensus       121 -----~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~  154 (223)
                           ..+++++++++|+|+.++. +.+++..+++...+
T Consensus       104 ~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~  141 (251)
T 1zud_1          104 QQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVA  141 (251)
T ss_dssp             CSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHH
T ss_pred             eccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHH
Confidence                 0134567788999988876 66778777766554

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=97.28  E-value=0.0049  Score=55.14  Aligned_cols=104  Identities=13%  Similarity=0.156  Sum_probs=70.9

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEE-EcCCC-----CC---------------CCCc--ccccChhhhhc-C
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISY-NSRRK-----RP---------------SVLF--PYCANVYDLAV-N  130 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~-~~~~~-----~~---------------~~~~--~~~~~l~el~~-~  130 (223)
                      .+++|++|.|.|+|++|+.+|+.|...|.+|+. .|.+.     .-               ..++  ....+.++++. .
T Consensus       231 ~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~~~  310 (440)
T 3aog_A          231 LQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGLP  310 (440)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTTCC
T ss_pred             CCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhcCC
Confidence            358899999999999999999999999999874 44321     00               0011  01224456653 7


Q ss_pred             CcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      ||+++-|..     .+.++.+....++ -.+++-.+.+.+- .+ -.+.|.++.+.
T Consensus       311 ~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~t-~e-A~~iL~~~GI~  358 (440)
T 3aog_A          311 VEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPTT-PA-ADDILLEKGVL  358 (440)
T ss_dssp             CSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCBC-HH-HHHHHHHHTCE
T ss_pred             CcEEEecCC-----cCccchhhHHHcC-CcEEEecCccccC-HH-HHHHHHHCCCE
Confidence            999988764     4567777777774 4688888888874 33 34566666665

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=97.28  E-value=0.00032  Score=59.64  Aligned_cols=92  Identities=23%  Similarity=0.220  Sum_probs=62.8

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC---------------C--cccccChhhhhcCCcEEEEeccC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV---------------L--FPYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~---------------~--~~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      ++|+|||.|.+|..+|..|...|.  +|..+|+.++..+               .  .....+ .+.++.||+|+++.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            589999999999999999988787  8999998764321               0  011234 7889999999999753


Q ss_pred             C--h-hhh-hcc--C-------HHHHhcCCCCcEEEEcCCCcccCHH
Q 035615          141 T--E-QTH-HII--N-------KDVMAELGKGGMIINVGRGALIDEK  174 (223)
Q Consensus       141 t--~-~t~-~li--~-------~~~l~~mk~ga~lIN~arg~~vd~~  174 (223)
                      .  + .++ .++  |       .+.+....|++++++++  ..+|.-
T Consensus        80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~  124 (294)
T 1oju_A           80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVM  124 (294)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHH
Confidence            2  1 111 111  1       12344557899999998  455543

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=97.28  E-value=0.00073  Score=58.24  Aligned_cols=91  Identities=9%  Similarity=0.116  Sum_probs=60.7

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC---------------Ccc--cccChhhhhcCCcEEEEec
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV---------------LFP--YCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~---------------~~~--~~~~l~el~~~aDiv~~~~  138 (223)
                      .+.++|+|||.|.+|..+|..+...|+ +|..+|+.++..+               ...  ...+. +.++.||+|+++.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa   83 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA   83 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence            456799999999999999999988888 9999998875421               011  12344 7889999999997


Q ss_pred             cCC--hh-hh-hcc--CH-------HHHhcCCCCcEEEEcCCC
Q 035615          139 ALT--EQ-TH-HII--NK-------DVMAELGKGGMIINVGRG  168 (223)
Q Consensus       139 p~t--~~-t~-~li--~~-------~~l~~mk~ga~lIN~arg  168 (223)
                      +..  +. ++ .++  |.       +.+....|++++++++.-
T Consensus        84 g~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNP  126 (324)
T 3gvi_A           84 GVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNP  126 (324)
T ss_dssp             SCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             CcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCC
Confidence            422  11 11 111  11       223334688999999853

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=97.27  E-value=0.00016  Score=62.84  Aligned_cols=62  Identities=21%  Similarity=0.199  Sum_probs=47.6

Q ss_pred             CCEEEEEecChHHHH-HHHHHHhC-CCEEE-EEcCCCCCCC-------CcccccChhhhhcC--CcEEEEeccC
Q 035615           79 GMQVGIVRLGNIGSE-VLNRLQAF-GFIIS-YNSRRKRPSV-------LFPYCANVYDLAVN--SDVLVVCCAL  140 (223)
Q Consensus        79 g~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~~-------~~~~~~~l~el~~~--aDiv~~~~p~  140 (223)
                      ..+|||||+|.||+. .++.++.. ++++. ++|+++....       ....+.++++++++  .|+|++++|.
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~   78 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPP   78 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCH
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCc
Confidence            468999999999995 88888876 77865 7788764322       22346899999974  5999999983

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=97.26  E-value=0.00055  Score=59.05  Aligned_cols=91  Identities=19%  Similarity=0.223  Sum_probs=59.9

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC--------------CcccccChhhhhcCCcEEEEeccC
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV--------------LFPYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~--------------~~~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      -.+++|+|||.|.||..+|..+...|.  ++..+|+.....+              ......+..+.++.||+|+++...
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~   86 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA   86 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence            357899999999999999999987777  8999998653211              111123445778999999998753


Q ss_pred             C--h-hhh-hcc--C-------HHHHhcCCCCcEEEEcCC
Q 035615          141 T--E-QTH-HII--N-------KDVMAELGKGGMIINVGR  167 (223)
Q Consensus       141 t--~-~t~-~li--~-------~~~l~~mk~ga~lIN~ar  167 (223)
                      .  | .++ .++  |       .+.+....|++++++++.
T Consensus        87 ~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN  126 (326)
T 3vku_A           87 PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN  126 (326)
T ss_dssp             C----------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence            2  1 122 222  1       123444568999999974

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=97.26  E-value=0.003  Score=53.96  Aligned_cols=99  Identities=16%  Similarity=0.233  Sum_probs=74.1

Q ss_pred             ccC-CCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------CcccccChhhhhcCCcEEEEe
Q 035615           76 KLG-GMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------LFPYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        76 ~l~-g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~~~~~~~l~el~~~aDiv~~~  137 (223)
                      .+. |++|+++| .+++.++.+..+..+|++|.+..|..-...                .+....+++|.++.+|+|..-
T Consensus       142 ~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~  221 (307)
T 3tpf_A          142 MQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITD  221 (307)
T ss_dssp             CGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEec
Confidence            478 99999999 578999999999999999998877543221                112357899999999999876


Q ss_pred             c--cCCh--h--------hhhccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 035615          138 C--ALTE--Q--------THHIINKDVMAELGKGGMIINVG---RGALIDEK  174 (223)
Q Consensus       138 ~--p~t~--~--------t~~li~~~~l~~mk~ga~lIN~a---rg~~vd~~  174 (223)
                      .  ....  +        ...-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       222 ~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~lPa~Rg~EI~~e  273 (307)
T 3tpf_A          222 TWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEE  273 (307)
T ss_dssp             CSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHH
T ss_pred             CcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCCceeCHH
Confidence            5  0111  0        13557999999999999999887   56655544

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=97.25  E-value=0.00021  Score=63.85  Aligned_cols=63  Identities=16%  Similarity=0.114  Sum_probs=47.5

Q ss_pred             CCEEEEEecChHHH-HHHHHHHhC-CCEE-EEEcCCCCCCC------Ccc-----cccChhhhhc--CCcEEEEeccCC
Q 035615           79 GMQVGIVRLGNIGS-EVLNRLQAF-GFII-SYNSRRKRPSV------LFP-----YCANVYDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~G~iG~-~~a~~l~~~-G~~V-~~~~~~~~~~~------~~~-----~~~~l~el~~--~aDiv~~~~p~t  141 (223)
                      -.+|||||+|.||+ .+++.+... ++++ .++|+++....      +..     .+.+++++++  +.|+|++++|..
T Consensus        83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~  161 (433)
T 1h6d_A           83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNS  161 (433)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGG
T ss_pred             ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCch
Confidence            35899999999997 888888765 5775 47787764321      221     3678999987  799999999854

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=97.25  E-value=0.0033  Score=53.91  Aligned_cols=99  Identities=14%  Similarity=0.142  Sum_probs=74.5

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEec
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~~  138 (223)
                      .+.|.+|+++|= +++.++.+..+..+|++|.+..|..-...              +  .....+++|.++.+|+|..-.
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~  231 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV  231 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcc
Confidence            378999999995 89999999999999999998887543221              1  223578999999999998844


Q ss_pred             cC-------Chh-----hhhccCHHHHhcCCCCcEEEEcCC---CcccCHH
Q 035615          139 AL-------TEQ-----THHIINKDVMAELGKGGMIINVGR---GALIDEK  174 (223)
Q Consensus       139 p~-------t~~-----t~~li~~~~l~~mk~ga~lIN~ar---g~~vd~~  174 (223)
                      =.       .++     ...-++++.++.+|++++|.-+.-   |.=|+.+
T Consensus       232 w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~lP~~Rg~EI~~e  282 (315)
T 1pvv_A          232 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDD  282 (315)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             eeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCCCCCCCCccCHH
Confidence            20       111     235679999999999999999874   5545443

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=97.22  E-value=0.0032  Score=56.98  Aligned_cols=98  Identities=14%  Similarity=0.110  Sum_probs=70.3

Q ss_pred             cccCCCEEEEEecC----------hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhh
Q 035615           75 FKLGGMQVGIVRLG----------NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQT  144 (223)
Q Consensus        75 ~~l~g~~vgIiG~G----------~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t  144 (223)
                      ..+.|++|+|+|+-          .=...+++.|...|.+|.+|||.-..........++++.++.+|.|++++... +-
T Consensus       349 ~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~-~f  427 (478)
T 3g79_A          349 KKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIVVLAGHS-AY  427 (478)
T ss_dssp             CCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHHTTCSEEEECSCCH-HH
T ss_pred             cCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHHhcCCEEEEecCCH-HH
Confidence            45889999999963          23678999999999999999997764333333568899999999999998744 32


Q ss_pred             hhccCH-HHHhcCC-CCcEEEEcCCCcccCHHHH
Q 035615          145 HHIINK-DVMAELG-KGGMIINVGRGALIDEKEM  176 (223)
Q Consensus       145 ~~li~~-~~l~~mk-~ga~lIN~arg~~vd~~al  176 (223)
                      +. ++- ...+.|+ +..+++|. |+- .|.+.+
T Consensus       428 ~~-~d~~~~~~~~~~~~~~i~D~-rn~-~~~~~~  458 (478)
T 3g79_A          428 SS-LKADWAKKVSAKANPVIIDG-RNV-IEPDEF  458 (478)
T ss_dssp             HS-CCHHHHHHHHCCSSCEEEES-SSC-SCHHHH
T ss_pred             Hh-hhHHHHHHHhccCCCEEEEC-CCC-CCHHHH
Confidence            32 343 3445677 37889994 654 454443

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=97.21  E-value=0.0015  Score=55.75  Aligned_cols=91  Identities=12%  Similarity=0.168  Sum_probs=68.9

Q ss_pred             ccCCCEEEEEec---ChHHHHHHHHHHhCCCEEEEEcCCCCCCC--CcccccChhhhhcCCcEEEEeccCCh--------
Q 035615           76 KLGGMQVGIVRL---GNIGSEVLNRLQAFGFIISYNSRRKRPSV--LFPYCANVYDLAVNSDVLVVCCALTE--------  142 (223)
Q Consensus        76 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~el~~~aDiv~~~~p~t~--------  142 (223)
                      .+.|++|+++|=   +++.++.+..+..+|++|.+..|..-...  ......+++|.++.+|+|....--.+        
T Consensus       144 ~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~g~~~d~~eav~~aDvvyt~~~q~er~~~~~~~  223 (304)
T 3r7f_A          144 TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLRIQNERHQSAVSQ  223 (304)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTCSSCEECCHHHHHHHCSEEEECCCCTTTCCSSCCS
T ss_pred             CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcchhhcCccCCHHHHhCCCCEEEeccchhhccccchhH
Confidence            478999999996   57999999999999999988876432111  11235689999999999987431111        


Q ss_pred             ---hhhhccCHHHHhcCCCCcEEEEcC
Q 035615          143 ---QTHHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       143 ---~t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                         ....-++.+.++.+|++++|..+.
T Consensus       224 ~~~~~~y~v~~~~l~~a~~~ai~mHcl  250 (304)
T 3r7f_A          224 EGYLNKYGLTVERAERMKRHAIIMHPA  250 (304)
T ss_dssp             TTHHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred             HHHhCCCccCHHHHhhcCCCCEEECCC
Confidence               123557999999999999999887

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=97.21  E-value=0.00071  Score=58.38  Aligned_cols=106  Identities=14%  Similarity=0.217  Sum_probs=69.9

Q ss_pred             CEEEEEecChHHHHHHHHHHh---------CCCEEE-EEcCCCCCCCC-------------ccccc--Chhhhhc--CCc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQA---------FGFIIS-YNSRRKRPSVL-------------FPYCA--NVYDLAV--NSD  132 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~---------~G~~V~-~~~~~~~~~~~-------------~~~~~--~l~el~~--~aD  132 (223)
                      .+|||||+|.||+.+++.+..         .+.+|. ++|++......             ...+.  +++++++  +.|
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD   82 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD   82 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence            479999999999999999875         466765 55665432111             11233  8888885  589


Q ss_pred             EEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCce
Q 035615          133 VLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALI-DEKEMLQFLVQGDIN  186 (223)
Q Consensus       133 iv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~v-d~~al~~aL~~~~i~  186 (223)
                      +|+.++|....... .-+-....|+.|.-+|....+.+. +-+.|.++.++.+..
T Consensus        83 vVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~  136 (327)
T 3do5_A           83 VLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVR  136 (327)
T ss_dssp             EEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCc
Confidence            99999985432111 112345567888888877666654 567777777777664

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.20  E-value=0.0003  Score=63.26  Aligned_cols=64  Identities=14%  Similarity=0.115  Sum_probs=48.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------Ccc----cc---cChhhhhcCCcEEEEeccCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------LFP----YC---ANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~----~~---~~l~el~~~aDiv~~~~p~t  141 (223)
                      .+++|+|+|.|.||+.+++.|...|++|.+++|+.....       ...    ..   .++.++++.+|+|+.++|..
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~   79 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT   79 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence            478999999999999999999999999999998753211       110    11   24557788999999999854

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=97.20  E-value=0.00099  Score=57.30  Aligned_cols=94  Identities=17%  Similarity=0.196  Sum_probs=61.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------C--------cc-cccChhhhhcCCcEEEEeccC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------L--------FP-YCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------~--------~~-~~~~l~el~~~aDiv~~~~p~  140 (223)
                      +.++|+|||.|.||..+|..+...|+ +|..+|+.+...+       .        .. ...+..+.++.||+|+++.+.
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~   83 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGV   83 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCc
Confidence            35799999999999999999987777 9999998875421       1        11 112335788999999999743


Q ss_pred             C--hh-hh-hcc--CH-------HHHhcCCCCcEEEEcCCCcccCH
Q 035615          141 T--EQ-TH-HII--NK-------DVMAELGKGGMIINVGRGALIDE  173 (223)
Q Consensus       141 t--~~-t~-~li--~~-------~~l~~mk~ga~lIN~arg~~vd~  173 (223)
                      .  +. ++ .++  |.       +.+....|++++++++  ..+|.
T Consensus        84 p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~  127 (321)
T 3p7m_A           84 PRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLDI  127 (321)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHH
T ss_pred             CCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchHH
Confidence            2  11 11 111  11       2233345889999995  34443

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=97.20  E-value=0.00077  Score=57.49  Aligned_cols=62  Identities=11%  Similarity=0.163  Sum_probs=48.8

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCCCEE-EEEcCCCCCCC------CcccccChhhhh----------cCCcEEEEeccCC
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFGFII-SYNSRRKRPSV------LFPYCANVYDLA----------VNSDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G~~V-~~~~~~~~~~~------~~~~~~~l~el~----------~~aDiv~~~~p~t  141 (223)
                      .+|||||+ |.||+..++.++..+.++ .++|+++....      ....+.++++++          .+.|+|++++|..
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~   83 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNH   83 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGG
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCch
Confidence            58999999 789999999999889885 46787765421      233467888887          6799999999854

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=97.20  E-value=0.0005  Score=59.10  Aligned_cols=62  Identities=16%  Similarity=0.194  Sum_probs=48.4

Q ss_pred             CCCEEEEEecChHHH-HHHHHHHhC-CCEEE-EEcCCCCCCCCcccccChhhhhcC---CcEEEEeccC
Q 035615           78 GGMQVGIVRLGNIGS-EVLNRLQAF-GFIIS-YNSRRKRPSVLFPYCANVYDLAVN---SDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~-~~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~l~el~~~---aDiv~~~~p~  140 (223)
                      +-.+|||||+|.||+ ..++.++.. ++++. ++|++.+. .+...+.+++++++.   .|+|++++|.
T Consensus        24 ~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~-~g~~~~~~~~~ll~~~~~vD~V~i~tp~   91 (330)
T 4ew6_A           24 SPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV-EGVNSYTTIEAMLDAEPSIDAVSLCMPP   91 (330)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC-TTSEEESSHHHHHHHCTTCCEEEECSCH
T ss_pred             CCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh-cCCCccCCHHHHHhCCCCCCEEEEeCCc
Confidence            346899999999999 688888875 67765 67777543 345567899999865   8999999983

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=97.19  E-value=0.01  Score=52.69  Aligned_cols=104  Identities=14%  Similarity=0.175  Sum_probs=71.6

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHh-CCCEEEE-EcCCC-----C--C-------------CCCc--ccccChhhhh-c
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQA-FGFIISY-NSRRK-----R--P-------------SVLF--PYCANVYDLA-V  129 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~-~G~~V~~-~~~~~-----~--~-------------~~~~--~~~~~l~el~-~  129 (223)
                      .+++|++|.|.|+|++|+..++.|.. .|.+|+. .|.+.     +  .             ..++  ....+.++++ .
T Consensus       205 ~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil~~  284 (415)
T 2tmg_A          205 IDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLEL  284 (415)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHTTC
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhhcC
Confidence            46899999999999999999999998 9999874 34321     0  0             0011  0122345665 3


Q ss_pred             CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          130 NSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       130 ~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      .||+++-|..     .+.++.+....++ -.+++-.+.+.+- .+ -.+.|.++.+.
T Consensus       285 ~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~t-~~-a~~~l~~~Gi~  333 (415)
T 2tmg_A          285 DVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPTT-PE-ADEILSRRGIL  333 (415)
T ss_dssp             SCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCBC-HH-HHHHHHHTTCE
T ss_pred             CCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCcccC-HH-HHHHHHHCCCE
Confidence            7999988774     4567888888884 5678888888864 33 34556676665

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=97.18  E-value=0.00039  Score=60.37  Aligned_cols=63  Identities=17%  Similarity=0.155  Sum_probs=48.4

Q ss_pred             CCEEEEEecChHHHH-HHHHHHhC-CCEEE-EEcCCCCCCC----CcccccChhhhhcC--CcEEEEeccCC
Q 035615           79 GMQVGIVRLGNIGSE-VLNRLQAF-GFIIS-YNSRRKRPSV----LFPYCANVYDLAVN--SDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~~----~~~~~~~l~el~~~--aDiv~~~~p~t  141 (223)
                      -.+|||||+|.||+. .+..++.. ++++. ++|++++...    ....+.+++++++.  .|+|++++|..
T Consensus         5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~   76 (362)
T 3fhl_A            5 IIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKERYPQASIVRSFKELTEDPEIDLIVVNTPDN   76 (362)
T ss_dssp             CEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGTTCTTSEEESCSHHHHTCTTCCEEEECSCGG
T ss_pred             ceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHHhCCCCceECCHHHHhcCCCCCEEEEeCChH
Confidence            358999999999997 67777765 77865 6788765432    23457899999976  89999999854

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=97.18  E-value=0.0024  Score=54.43  Aligned_cols=92  Identities=16%  Similarity=0.191  Sum_probs=70.7

Q ss_pred             ccCCCEEEEEec---ChHHHHHHHHHHhC-CCEEEEEcCCCCCCC-------C--cccccChhhhhcCCcEEEEeccCCh
Q 035615           76 KLGGMQVGIVRL---GNIGSEVLNRLQAF-GFIISYNSRRKRPSV-------L--FPYCANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        76 ~l~g~~vgIiG~---G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~-------~--~~~~~~l~el~~~aDiv~~~~p~t~  142 (223)
                      .+.|++|+++|=   +++.++.+..+..+ |++|.+..|..-...       +  +....+++|.++.+|+|....=-.+
T Consensus       146 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~e  225 (299)
T 1pg5_A          146 TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKE  225 (299)
T ss_dssp             CSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCST
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCcccc
Confidence            378999999996   69999999999999 999998876432111       2  2235789999999999987653221


Q ss_pred             ------h-h----hhccCHHHHhcCCCCcEEEEcCC
Q 035615          143 ------Q-T----HHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       143 ------~-t----~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                            + .    ..-++++.++.+|++++|.-+.-
T Consensus       226 r~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lP  261 (299)
T 1pg5_A          226 RFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLP  261 (299)
T ss_dssp             TSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCSC
T ss_pred             cccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCCC
Confidence                  1 1    35679999999999999998874

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=97.17  E-value=0.0031  Score=54.27  Aligned_cols=99  Identities=12%  Similarity=0.143  Sum_probs=73.5

Q ss_pred             ccCCCEEEEEecC--hHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEe
Q 035615           76 KLGGMQVGIVRLG--NIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        76 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~  137 (223)
                      .+.|++|+++|=|  ++.++.+..+..+|++|.+..|..-...              +  +....+++|.++.+|+|..-
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~  243 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTD  243 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEec
Confidence            4789999999975  9999999999999999998877542211              1  22357899999999999874


Q ss_pred             ccC-------Chh-----hhhccCHHHHhcC-CCCcEEEEcCC---CcccCHH
Q 035615          138 CAL-------TEQ-----THHIINKDVMAEL-GKGGMIINVGR---GALIDEK  174 (223)
Q Consensus       138 ~p~-------t~~-----t~~li~~~~l~~m-k~ga~lIN~ar---g~~vd~~  174 (223)
                      .=.       .++     ...-++++.++.+ |++++|.-+.-   |.=|+.+
T Consensus       244 ~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~LP~~Rg~EI~~e  296 (325)
T 1vlv_A          244 VWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYE  296 (325)
T ss_dssp             CCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHH
T ss_pred             cccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCCCCCCCcccCHH
Confidence            321       011     2356799999999 99999999874   5544443

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.16  E-value=0.00081  Score=53.70  Aligned_cols=62  Identities=16%  Similarity=0.248  Sum_probs=48.0

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCCC-----------cccccChhhhhcCCcEEEEeccCC
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSVL-----------FPYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~-----------~~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      ++|.|.| .|.||+.+++.|...|++|++.+|++.....           .....++.++++.+|+|+.+....
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~   78 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNPG   78 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC-
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcCC
Confidence            7899999 5999999999999999999999988654321           112244667889999998877543

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=97.15  E-value=0.0026  Score=56.12  Aligned_cols=96  Identities=14%  Similarity=0.097  Sum_probs=67.4

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh---c
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA---E  155 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~---~  155 (223)
                      -.++.|+|.|.+|+++++.++.+|++|.++|+.+....        .+-+..+|-++...|     ...+..  +.   .
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~~--------~~~fp~a~~~~~~~p-----~~~~~~--~~~~~~  268 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFAT--------TARFPTADEVVVDWP-----HRYLAA--QAEAGA  268 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTSC--------TTTCSSSSEEEESCH-----HHHHHH--HHHHTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhcc--------cccCCCceEEEeCCh-----HHHHHh--hccccC
Confidence            45899999999999999999999999999987664211        122456665554444     111111  11   1


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEE
Q 035615          156 LGKGGMIINVGRGALIDEKEMLQFLVQGDINGVG  189 (223)
Q Consensus       156 mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~  189 (223)
                      +.+++.+|=+.++.-.|...|..+|+.+...+.+
T Consensus       269 ~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~YIG  302 (386)
T 2we8_A          269 IDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIG  302 (386)
T ss_dssp             CCTTCEEEECCCCHHHHHHHHHHHTTSSCCSEEE
T ss_pred             CCCCcEEEEEECChHhHHHHHHHHhcCCCCCEEE
Confidence            6778888888899889999999999887444333

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=97.15  E-value=0.0028  Score=54.88  Aligned_cols=98  Identities=15%  Similarity=0.102  Sum_probs=72.1

Q ss_pred             ccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEec
Q 035615           76 KLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        76 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~~  138 (223)
                      .+.|++|++|| .+++.++.+..+..+|++|.+..|..-...              +  +....+++ .++.+|+|..-+
T Consensus       172 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~  250 (339)
T 4a8t_A          172 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  250 (339)
T ss_dssp             CGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecC
Confidence            58899999999 589999999999999999998877543221              1  12356788 999999998633


Q ss_pred             --cC----C--hh----h--hhccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 035615          139 --AL----T--EQ----T--HHIINKDVMAELGKGGMIINVG---RGALIDEK  174 (223)
Q Consensus       139 --p~----t--~~----t--~~li~~~~l~~mk~ga~lIN~a---rg~~vd~~  174 (223)
                        ..    .  ++    .  ..-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       251 w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcLPa~Rg~EIt~e  303 (339)
T 4a8t_A          251 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDE  303 (339)
T ss_dssp             SSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECSCCCBTTTBCHH
T ss_pred             cccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCCCCCCCCeeCHH
Confidence              11    0  11    1  2557899999999999999887   56555543

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=97.13  E-value=0.00023  Score=61.56  Aligned_cols=89  Identities=7%  Similarity=-0.002  Sum_probs=60.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCCC----------------cccccChhhhhcCCcEEEEecc
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSVL----------------FPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~----------------~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      ..++|+|||.|.||..+|..+...|+  +|..+|...+..++                .....+.++ ++.||+|+++..
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG   98 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG   98 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence            56899999999999999999988787  89999986532210                011235555 899999999864


Q ss_pred             CC--h-hhh-hcc--C-------HHHHhcCCCCcEEEEcCC
Q 035615          140 LT--E-QTH-HII--N-------KDVMAELGKGGMIINVGR  167 (223)
Q Consensus       140 ~t--~-~t~-~li--~-------~~~l~~mk~ga~lIN~ar  167 (223)
                      ..  | .++ .++  |       .+.+....|++++++++.
T Consensus        99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN  139 (330)
T 3ldh_A           99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE  139 (330)
T ss_dssp             CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence            32  1 111 111  1       123344478999999984

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=97.13  E-value=0.0009  Score=57.23  Aligned_cols=62  Identities=8%  Similarity=0.132  Sum_probs=48.5

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCCCEEE-EEcCCCCCCC------CcccccChhhhh-----------cCCcEEEEeccC
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFGFIIS-YNSRRKRPSV------LFPYCANVYDLA-----------VNSDVLVVCCAL  140 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~-~~~~~~~~~~------~~~~~~~l~el~-----------~~aDiv~~~~p~  140 (223)
                      .++||||+ |.||+..++.++..+.++. ++|+++....      ....+.++++++           .+.|+|++++|.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~   83 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPN   83 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCG
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCc
Confidence            58999999 7899999999998898854 6787765421      233467888887           578999999985


Q ss_pred             C
Q 035615          141 T  141 (223)
Q Consensus       141 t  141 (223)
                      .
T Consensus        84 ~   84 (318)
T 3oa2_A           84 Y   84 (318)
T ss_dssp             G
T ss_pred             H
Confidence            4

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=97.11  E-value=0.00086  Score=57.82  Aligned_cols=89  Identities=16%  Similarity=0.246  Sum_probs=59.7

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC--------C-------cccccChhhhhcCCcEEEEeccCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV--------L-------FPYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~--------~-------~~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      .++|+|||.|.||..+|..+...|.  +|..+|+..+..+        .       .....+..+.++.||+|+++.+..
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~p   84 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGAN   84 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEecccC
Confidence            5789999999999999999988777  8999998654211        0       111223356789999999997532


Q ss_pred             --hh-hh-hcc--C-------HHHHhcCCCCcEEEEcCC
Q 035615          142 --EQ-TH-HII--N-------KDVMAELGKGGMIINVGR  167 (223)
Q Consensus       142 --~~-t~-~li--~-------~~~l~~mk~ga~lIN~ar  167 (223)
                        +. ++ .++  |       .+.+....|++++++++.
T Consensus        85 ~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN  123 (326)
T 3pqe_A           85 QKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN  123 (326)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence              11 11 111  1       123344568899999984

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=97.11  E-value=0.0017  Score=54.76  Aligned_cols=101  Identities=19%  Similarity=0.189  Sum_probs=60.5

Q ss_pred             CEEEEEecChHHHHHHHHHHh----CCCEEE-EEcCCCCCCCCcccccChhhhhc--CCcEEEEeccCChhhhhccCHHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQA----FGFIIS-YNSRRKRPSVLFPYCANVYDLAV--NSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~----~G~~V~-~~~~~~~~~~~~~~~~~l~el~~--~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      .+|||||+|.||+..++.+..    -++++. +++++.........+.+++++++  +.|+|++++|.......     .
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a~~~g~~~~~~~ell~~~~vD~V~i~tp~~~H~~~-----~   82 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQEIDVAYICSESSSHEDY-----I   82 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHHH-----H
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHHHHcCCCCCCHHHHhcCCCCCEEEEeCCcHhHHHH-----H
Confidence            589999999999999888764    366765 56765432211112478999986  68999999984432221     2


Q ss_pred             HhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCc
Q 035615          153 MAELGKGG-MIINV-GRGALIDEKEMLQFLVQGDI  185 (223)
Q Consensus       153 l~~mk~ga-~lIN~-arg~~vd~~al~~aL~~~~i  185 (223)
                      ...++.|. +++.- ---.+-+.+.|.++.++.++
T Consensus        83 ~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~  117 (294)
T 1lc0_A           83 RQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGR  117 (294)
T ss_dssp             HHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence            22334444 45542 11122344556666655444

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=97.10  E-value=0.00029  Score=60.40  Aligned_cols=62  Identities=23%  Similarity=0.223  Sum_probs=47.7

Q ss_pred             CEEEEEecChHHHHHHHHHHhCC---CEE-EEEcCCCCCCC------Cc-ccccChhhhhc--CCcEEEEeccCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFG---FII-SYNSRRKRPSV------LF-PYCANVYDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G---~~V-~~~~~~~~~~~------~~-~~~~~l~el~~--~aDiv~~~~p~t  141 (223)
                      .++||||+|.||+..++.++..+   +++ .++|+++....      +. ..+.+++++++  +.|+|++++|..
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~   77 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHP   77 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGG
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcH
Confidence            58999999999999999988654   465 46788764422      22 34689999997  699999999854

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=97.09  E-value=0.00043  Score=56.11  Aligned_cols=62  Identities=10%  Similarity=0.106  Sum_probs=45.3

Q ss_pred             CCEEEEEecChHHHHHHHH--HHhCCCEEE-EEcCCCCCCC----C--cccccChhhhhc-CCcEEEEeccCC
Q 035615           79 GMQVGIVRLGNIGSEVLNR--LQAFGFIIS-YNSRRKRPSV----L--FPYCANVYDLAV-NSDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~--l~~~G~~V~-~~~~~~~~~~----~--~~~~~~l~el~~-~aDiv~~~~p~t  141 (223)
                      .++++|||.|++|+.+++.  ... |+++. ++|.++....    +  .....+++++++ +.|+|++++|..
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~  151 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPRE  151 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHH
T ss_pred             CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCch
Confidence            3689999999999999985  334 88865 6677665432    1  112567888886 589999999844

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=97.08  E-value=0.0024  Score=55.26  Aligned_cols=92  Identities=9%  Similarity=0.034  Sum_probs=70.8

Q ss_pred             ccCCCEEEEEecC--hHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEe
Q 035615           76 KLGGMQVGIVRLG--NIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        76 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~  137 (223)
                      .+.|++|+++|=|  ++.++++..+..+|++|.+..|..-...              +  .....+++|.++.+|+|..-
T Consensus       152 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (335)
T 1dxh_A          152 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD  231 (335)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeC
Confidence            5889999999975  9999999999999999998877542211              1  22357899999999999874


Q ss_pred             ccC--------Chh-----hhhccCHHHHhcC-CCCcEEEEcCC
Q 035615          138 CAL--------TEQ-----THHIINKDVMAEL-GKGGMIINVGR  167 (223)
Q Consensus       138 ~p~--------t~~-----t~~li~~~~l~~m-k~ga~lIN~ar  167 (223)
                      .=.        ..+     ...-++.+.++.+ ||+++|.-+.-
T Consensus       232 ~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP  275 (335)
T 1dxh_A          232 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLP  275 (335)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSC
T ss_pred             CccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCCC
Confidence            420        111     2356799999999 99999998875

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=97.08  E-value=0.0044  Score=53.93  Aligned_cols=93  Identities=10%  Similarity=0.090  Sum_probs=68.3

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC------------------CcccccChhhhhcCCcEEE
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV------------------LFPYCANVYDLAVNSDVLV  135 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------------------~~~~~~~l~el~~~aDiv~  135 (223)
                      ..|.|++|++||= -++.++.+..+..+|++|.+..|..-...                  .+....+++|.++.+|+|.
T Consensus       184 ~~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvy  263 (353)
T 3sds_A          184 LGLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIV  263 (353)
T ss_dssp             CSCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEE
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEE
Confidence            4479999999994 57888888899999999998877543211                  1223578999999999998


Q ss_pred             Eec--cCChh----------hhhccCHHHHhc--CCCCcEEEEcCC
Q 035615          136 VCC--ALTEQ----------THHIINKDVMAE--LGKGGMIINVGR  167 (223)
Q Consensus       136 ~~~--p~t~~----------t~~li~~~~l~~--mk~ga~lIN~ar  167 (223)
                      .-.  +...+          ...-++.+.++.  +|++++|.-+.-
T Consensus       264 td~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcLP  309 (353)
T 3sds_A          264 TDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCLP  309 (353)
T ss_dssp             ECCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECSC
T ss_pred             eCCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCCC
Confidence            643  21111          124679999998  899999998873

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=97.07  E-value=0.00096  Score=57.18  Aligned_cols=111  Identities=16%  Similarity=0.184  Sum_probs=67.4

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC---------------CcccccChhhhhcCCcEEEEeccC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV---------------LFPYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~---------------~~~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      ..++|+|||.|.+|..++..+...|.  +|..+|..++..+               ......+..+.++.||+|+++.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~   84 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGA   84 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCC
Confidence            35799999999999999999887674  8999997653211               001112446779999999999864


Q ss_pred             Chh---hh--------hccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCceEE
Q 035615          141 TEQ---TH--------HIIN--KDVMAELGKGGMIINVGRGALIDEKEMLQF--LVQGDINGV  188 (223)
Q Consensus       141 t~~---t~--------~li~--~~~l~~mk~ga~lIN~arg~~vd~~al~~a--L~~~~i~~a  188 (223)
                      ...   ++        .++.  .+.+....|++++|+++.--=+....+.+.  +...++.|.
T Consensus        85 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~k~~~~p~~rviG~  147 (317)
T 3d0o_A           85 AQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYATWKFSGLPKERVIGS  147 (317)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHhCCCHHHEEec
Confidence            321   11        1110  123334478999999763222233333333  333456555

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.07  E-value=0.00055  Score=59.53  Aligned_cols=85  Identities=21%  Similarity=0.233  Sum_probs=61.2

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC------CCccc---ccC---hhhhhcCCcEEEEeccCChhhh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS------VLFPY---CAN---VYDLAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~---~~~---l~el~~~aDiv~~~~p~t~~t~  145 (223)
                      .|++|.|+|.|.||..+++.++.+|++|++.++++++.      .++..   ..+   +.++....|+|+.++.....  
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~--  264 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHP--  264 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHH--
Confidence            68999999999999999999999999999988766432      12211   112   23344568999998864321  


Q ss_pred             hccCHHHHhcCCCCcEEEEcCC
Q 035615          146 HIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~ar  167 (223)
                         -...++.|+++..+|+++.
T Consensus       265 ---~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          265 ---LLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             ---SHHHHHHEEEEEEEEECCC
T ss_pred             ---HHHHHHHHhcCCEEEEEcc
Confidence               2456677888888888764

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=97.07  E-value=0.0004  Score=62.99  Aligned_cols=109  Identities=11%  Similarity=0.172  Sum_probs=70.3

Q ss_pred             CCEEEEEecChH--HHHHHHHHH---hC-CCEEEEEcCCCCCCC-----------------CcccccChhhhhcCCcEEE
Q 035615           79 GMQVGIVRLGNI--GSEVLNRLQ---AF-GFIISYNSRRKRPSV-----------------LFPYCANVYDLAVNSDVLV  135 (223)
Q Consensus        79 g~~vgIiG~G~i--G~~~a~~l~---~~-G~~V~~~~~~~~~~~-----------------~~~~~~~l~el~~~aDiv~  135 (223)
                      .++|+|||.|.+  |.++|..+.   ++ |.+|..||+..+..+                 ......++++.++.||+|+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI   82 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   82 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence            468999999997  565566663   33 889999998764311                 1112357778899999999


Q ss_pred             EeccCCh-----------hhhhccC----------------------------HHHHhcCCCCcEEEEcCCCcccCHHHH
Q 035615          136 VCCALTE-----------QTHHIIN----------------------------KDVMAELGKGGMIINVGRGALIDEKEM  176 (223)
Q Consensus       136 ~~~p~t~-----------~t~~li~----------------------------~~~l~~mk~ga~lIN~arg~~vd~~al  176 (223)
                      +++|...           .-.+++.                            .+.+....|++++||++.---+-..++
T Consensus        83 iaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~  162 (480)
T 1obb_A           83 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV  162 (480)
T ss_dssp             ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH
T ss_pred             ECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            9997410           0011110                            123444578999999987665555555


Q ss_pred             HHHHHcCCceEE
Q 035615          177 LQFLVQGDINGV  188 (223)
Q Consensus       177 ~~aL~~~~i~~a  188 (223)
                      .+ +...++.|.
T Consensus       163 ~k-~p~~rviG~  173 (480)
T 1obb_A          163 TR-TVPIKAVGF  173 (480)
T ss_dssp             HH-HSCSEEEEE
T ss_pred             HH-CCCCcEEec
Confidence            55 555566654

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.05  E-value=0.0021  Score=56.05  Aligned_cols=83  Identities=13%  Similarity=0.285  Sum_probs=53.7

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHHhCC-CEEEEEcCCCCCCCC-------cc-------cccChhhhhcCCcEEEEeccCC
Q 035615           78 GGMQVGIVR-LGNIGSEVLNRLQAFG-FIISYNSRRKRPSVL-------FP-------YCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        78 ~g~~vgIiG-~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~-------~~-------~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      ...+|+|+| +|.+|+.+.+.|.... +++..+.........       +.       ...+ ++.++.+|+|+.|+|..
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~   93 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHG   93 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTT
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCch
Confidence            346899999 9999999999998764 477665433222110       00       0122 45567899999999854


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      ..      .+.....+.|+.+|+.+-
T Consensus        94 ~s------~~~a~~~~aG~~VId~sa  113 (359)
T 1xyg_A           94 TT------QEIIKELPTALKIVDLSA  113 (359)
T ss_dssp             TH------HHHHHTSCTTCEEEECSS
T ss_pred             hH------HHHHHHHhCCCEEEECCc
Confidence            22      222222267899998875

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=97.05  E-value=0.0032  Score=54.77  Aligned_cols=98  Identities=14%  Similarity=0.080  Sum_probs=72.1

Q ss_pred             ccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEec
Q 035615           76 KLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        76 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~~  138 (223)
                      .+.|++|++|| .+++.++.+..+..+|++|.+..|..-...              +  +....+++ .++.+|+|..-+
T Consensus       150 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~  228 (355)
T 4a8p_A          150 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  228 (355)
T ss_dssp             CGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecc
Confidence            58899999999 589999999999999999998877543221              1  12356788 999999998632


Q ss_pred             ----cC---C-hh-----h-hhccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 035615          139 ----AL---T-EQ-----T-HHIINKDVMAELGKGGMIINVG---RGALIDEK  174 (223)
Q Consensus       139 ----p~---t-~~-----t-~~li~~~~l~~mk~ga~lIN~a---rg~~vd~~  174 (223)
                          ..   . ++     . ..-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       229 w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~e  281 (355)
T 4a8p_A          229 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDE  281 (355)
T ss_dssp             SSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECSCCCBTTTBCHH
T ss_pred             cccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCCCCCCCCeeCHH
Confidence                10   0 11     1 2557899999999999999887   56555543

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=97.04  E-value=0.0007  Score=60.49  Aligned_cols=63  Identities=10%  Similarity=0.110  Sum_probs=48.2

Q ss_pred             CCEEEEEecChHHHHHHHHHHhC-CCEE-EEEcCCCCCCC---------C---ccccc----Chhhhhc--CCcEEEEec
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAF-GFII-SYNSRRKRPSV---------L---FPYCA----NVYDLAV--NSDVLVVCC  138 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~-G~~V-~~~~~~~~~~~---------~---~~~~~----~l~el~~--~aDiv~~~~  138 (223)
                      -.+|||||+|.||+..++.+... ++++ .++|++++...         +   ...+.    +++++++  +.|+|++++
T Consensus        20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~t   99 (444)
T 2ixa_A           20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSS   99 (444)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECC
T ss_pred             CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcC
Confidence            46899999999999999988875 6776 47787764321         1   23356    8999997  589999999


Q ss_pred             cCC
Q 035615          139 ALT  141 (223)
Q Consensus       139 p~t  141 (223)
                      |..
T Consensus       100 p~~  102 (444)
T 2ixa_A          100 PWE  102 (444)
T ss_dssp             CGG
T ss_pred             CcH
Confidence            844

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=97.04  E-value=0.0012  Score=59.81  Aligned_cols=64  Identities=19%  Similarity=0.263  Sum_probs=49.3

Q ss_pred             CCCEEEEEec----ChHHHHHHHHHHhC--CCEEE-EEcCCCCCCC------Cc---ccccChhhhhc--CCcEEEEecc
Q 035615           78 GGMQVGIVRL----GNIGSEVLNRLQAF--GFIIS-YNSRRKRPSV------LF---PYCANVYDLAV--NSDVLVVCCA  139 (223)
Q Consensus        78 ~g~~vgIiG~----G~iG~~~a~~l~~~--G~~V~-~~~~~~~~~~------~~---~~~~~l~el~~--~aDiv~~~~p  139 (223)
                      .-.+|||||+    |.||+..++.++..  ++++. ++|+++....      +.   ..+.+++++++  +.|+|++++|
T Consensus        38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp  117 (479)
T 2nvw_A           38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK  117 (479)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred             CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCC
Confidence            3468999999    99999999999876  77864 7787764321      22   25788999985  6899999998


Q ss_pred             CC
Q 035615          140 LT  141 (223)
Q Consensus       140 ~t  141 (223)
                      ..
T Consensus       118 ~~  119 (479)
T 2nvw_A          118 VP  119 (479)
T ss_dssp             HH
T ss_pred             cH
Confidence            43

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=97.04  E-value=0.00093  Score=57.35  Aligned_cols=110  Identities=15%  Similarity=0.178  Sum_probs=65.9

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCCC--------------cccccChhhhhcCCcEEEEeccCCh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSVL--------------FPYCANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~--------------~~~~~~l~el~~~aDiv~~~~p~t~  142 (223)
                      .++|+|||.|.+|..++..+...+.  ++..+|...++.++              .....+..+.++.||+|+++.+...
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~   84 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQ   84 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCC
Confidence            3689999999999999999887665  89999986532210              0111244677999999999986432


Q ss_pred             h---hh--------hccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCceEE
Q 035615          143 Q---TH--------HIIN--KDVMAELGKGGMIINVGRGALIDEKEMLQF--LVQGDINGV  188 (223)
Q Consensus       143 ~---t~--------~li~--~~~l~~mk~ga~lIN~arg~~vd~~al~~a--L~~~~i~~a  188 (223)
                      .   ++        .++.  .+.+....|++++|+++.--=+-...+.+.  +...++.|.
T Consensus        85 ~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~  145 (318)
T 1ez4_A           85 KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGS  145 (318)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEec
Confidence            1   11        1110  123334478999999843322223333333  333455554

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=97.03  E-value=0.00097  Score=55.29  Aligned_cols=62  Identities=23%  Similarity=0.282  Sum_probs=47.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-C-------cccccChhhhhcC-CcEEEEecc
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-L-------FPYCANVYDLAVN-SDVLVVCCA  139 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~-------~~~~~~l~el~~~-aDiv~~~~p  139 (223)
                      ++++|.|.|.|.||+.+++.|...|++|++.+|+..... .       .....+++++++. +|+|+.+..
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            367899999999999999999999999999988765432 1       1122345566666 999987764

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.02  E-value=0.0014  Score=51.05  Aligned_cols=63  Identities=16%  Similarity=0.148  Sum_probs=48.1

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cc-------ccccChhhhhcCCcEEEEeccCC
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LF-------PYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~-------~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      +++|.|.|. |.||+.+++.|...|++|++.+|++....     ..       ....++.++++.+|+|+.+....
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~   78 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence            479999997 99999999999999999999988764321     11       11234567788999998887643

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.02  E-value=0.0027  Score=55.32  Aligned_cols=93  Identities=13%  Similarity=0.151  Sum_probs=57.9

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHhCC------CEEEEE-cCCCC-C-CC----Ccc-----cccCh-hhhhcCCcEEEEec
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQAFG------FIISYN-SRRKR-P-SV----LFP-----YCANV-YDLAVNSDVLVVCC  138 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~~G------~~V~~~-~~~~~-~-~~----~~~-----~~~~l-~el~~~aDiv~~~~  138 (223)
                      .++|+|+| .|.+|+.+.+.|...+      .++..+ +++.. + ..    ...     ...++ .+.+..+|+|++|+
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~al   88 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAVLGGHDAVFLAL   88 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHHHTTCSEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHHHhcCCCEEEECC
Confidence            36899999 9999999999998766      466555 33221 1 10    000     11111 23456899999999


Q ss_pred             cCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 035615          139 ALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEML  177 (223)
Q Consensus       139 p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~  177 (223)
                      |...      ..+....++.|+.+|+.|.---.+..+.+
T Consensus        89 g~~~------s~~~~~~~~~G~~vIDlSa~~R~~~~~~~  121 (352)
T 2nqt_A           89 PHGH------SAVLAQQLSPETLIIDCGADFRLTDAAVW  121 (352)
T ss_dssp             TTSC------CHHHHHHSCTTSEEEECSSTTTCSCHHHH
T ss_pred             CCcc------hHHHHHHHhCCCEEEEECCCccCCcchhh
Confidence            8652      34444444668999998865444443433

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=97.02  E-value=0.0013  Score=56.69  Aligned_cols=62  Identities=10%  Similarity=0.218  Sum_probs=45.7

Q ss_pred             CEEEEEecChHHH-HHHHHHHhC-CCEEE-EEcCCCCCC-------CCcccccChhhhhcC--CcEEEEeccCC
Q 035615           80 MQVGIVRLGNIGS-EVLNRLQAF-GFIIS-YNSRRKRPS-------VLFPYCANVYDLAVN--SDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG~G~iG~-~~a~~l~~~-G~~V~-~~~~~~~~~-------~~~~~~~~l~el~~~--aDiv~~~~p~t  141 (223)
                      .+|||||+|.||+ ..+..++.. +++|. ++|++....       .+...+.++++++..  .|+|++++|..
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   76 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAH   76 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGG
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcH
Confidence            4899999999999 567767665 77865 678772111       123456899999976  89999999854

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=97.01  E-value=0.00076  Score=58.41  Aligned_cols=64  Identities=16%  Similarity=0.107  Sum_probs=45.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhC--------CCEEE-EEcCCCCCCC------Cc-ccccChhhhhc--CCcEEEEecc
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAF--------GFIIS-YNSRRKRPSV------LF-PYCANVYDLAV--NSDVLVVCCA  139 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~--------G~~V~-~~~~~~~~~~------~~-~~~~~l~el~~--~aDiv~~~~p  139 (223)
                      +--+|||||+|.||+.-++.++..        +++|. ++|++++..+      +. ..+.+++++++  +.|+|++++|
T Consensus        24 kkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP  103 (393)
T 4fb5_A           24 KPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTP  103 (393)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSC
T ss_pred             CCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCC
Confidence            345899999999999877766542        56754 6788876543      22 34689999986  5799999998


Q ss_pred             CC
Q 035615          140 LT  141 (223)
Q Consensus       140 ~t  141 (223)
                      ..
T Consensus       104 ~~  105 (393)
T 4fb5_A          104 NQ  105 (393)
T ss_dssp             GG
T ss_pred             hH
Confidence            54

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=97.01  E-value=0.0011  Score=56.19  Aligned_cols=103  Identities=12%  Similarity=0.154  Sum_probs=67.9

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCCCE-EEEEcCCCC--CCCCcccccChhhhhc--CCcEEEEeccCChhhhhccCHHHH
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFGFI-ISYNSRRKR--PSVLFPYCANVYDLAV--NSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G~~-V~~~~~~~~--~~~~~~~~~~l~el~~--~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      .++.|+|. |++|+.+++.+...|++ |..+++...  ...+...+.+++++..  ..|++++++|. +.+...+ ++..
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~ii~vp~-~~~~~~v-~ea~   91 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPA-PFAKDAV-FEAI   91 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCH-HHHHHHH-HHHH
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCEEEEccCH-HHHHHHH-HHHH
Confidence            45788898 99999999999999998 335565431  1134455789999988  89999999983 2333333 2333


Q ss_pred             hcCCCCcEEEEcCCC-cccCHHHHHHHHHcCCce
Q 035615          154 AELGKGGMIINVGRG-ALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       154 ~~mk~ga~lIN~arg-~~vd~~al~~aL~~~~i~  186 (223)
                      + .+.. .+|..+.| ..-+++.|.++.++..+.
T Consensus        92 ~-~Gi~-~vVi~t~G~~~~~~~~l~~~A~~~gi~  123 (294)
T 2yv1_A           92 D-AGIE-LIVVITEHIPVHDTMEFVNYAEDVGVK  123 (294)
T ss_dssp             H-TTCS-EEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             H-CCCC-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            3 2222 24445544 224567888888876664

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=97.01  E-value=0.013  Score=52.12  Aligned_cols=104  Identities=15%  Similarity=0.217  Sum_probs=71.1

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEE-EEcCCC-----CCCC-----------C-ccc-ccChhhhh-cCCcEE
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIIS-YNSRRK-----RPSV-----------L-FPY-CANVYDLA-VNSDVL  134 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~-----~~~~-----------~-~~~-~~~l~el~-~~aDiv  134 (223)
                      .+++|++|.|.|+|++|+.+|+.|...|++|+ +.|.+.     ....           + ... ..+-++++ ..||++
T Consensus       214 ~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~DVl  293 (419)
T 3aoe_E          214 LDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEVL  293 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCSEE
T ss_pred             CCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCceEE
Confidence            35889999999999999999999999999987 444421     1000           0 000 11223443 379999


Q ss_pred             EEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          135 VVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       135 ~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      +-|.     +.+.|+.+..+.++- .+++.-+.+.+- .++ .+.|.++.+.
T Consensus       294 iP~A-----~~n~i~~~~A~~l~a-k~V~EgAN~p~t-~~A-~~~L~~~Gi~  337 (419)
T 3aoe_E          294 VLAA-----REGALDGDRARQVQA-QAVVEVANFGLN-PEA-EAYLLGKGAL  337 (419)
T ss_dssp             EECS-----CTTCBCHHHHTTCCC-SEEEECSTTCBC-HHH-HHHHHHHTCE
T ss_pred             Eecc-----cccccccchHhhCCc-eEEEECCCCcCC-HHH-HHHHHHCCCE
Confidence            8775     356688888888854 588999999874 433 4667666665

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=97.01  E-value=0.00038  Score=60.42  Aligned_cols=63  Identities=17%  Similarity=0.177  Sum_probs=48.1

Q ss_pred             CEEEEEecChHHHH-HHHHHHhC-CCEEE-EEcCCCCCC----CCcccccChhhhhc--CCcEEEEeccCCh
Q 035615           80 MQVGIVRLGNIGSE-VLNRLQAF-GFIIS-YNSRRKRPS----VLFPYCANVYDLAV--NSDVLVVCCALTE  142 (223)
Q Consensus        80 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~----~~~~~~~~l~el~~--~aDiv~~~~p~t~  142 (223)
                      .+|||||+|.||+. .++.++.. ++++. ++|+++...    .+...+.+++++++  +.|+|++++|...
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~   77 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHELEEITNDPAIELVIVTTPSGL   77 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTTT
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEcCCcHH
Confidence            58999999999997 67777765 77865 678775431    13345789999997  7899999999653

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=97.00  E-value=0.0019  Score=55.28  Aligned_cols=92  Identities=14%  Similarity=0.106  Sum_probs=69.5

Q ss_pred             ccCCCEEEEEec---ChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------C--cccccChhhhhcCCcEEEEeccC
Q 035615           76 KLGGMQVGIVRL---GNIGSEVLNRLQAFGFIISYNSRRKRPSV----------L--FPYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        76 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      .+.|++|+++|=   |++.++.+..+..+|++|.+..|..-...          +  +....+++|.++.+|+|..-.=-
T Consensus       152 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q  231 (308)
T 1ml4_A          152 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQ  231 (308)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCC
T ss_pred             CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCcc
Confidence            378999999996   58999999999999999998877542211          1  12347899999999999875421


Q ss_pred             C------hhh-----hhccCHHHHhcCCCCcEEEEcCC
Q 035615          141 T------EQT-----HHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       141 t------~~t-----~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      .      ++-     ..-++++.++.+|++++|.-+.-
T Consensus       232 ~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lP  269 (308)
T 1ml4_A          232 KERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPLP  269 (308)
T ss_dssp             GGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCSC
T ss_pred             ccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCCC
Confidence            1      111     24568899999999999998764

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.98  E-value=0.0055  Score=54.55  Aligned_cols=104  Identities=13%  Similarity=0.200  Sum_probs=65.0

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEE-cCCC----CC---CCC------------------c--ccccChhh
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYN-SRRK----RP---SVL------------------F--PYCANVYD  126 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~-~~~~----~~---~~~------------------~--~~~~~l~e  126 (223)
                      .+++|++|.|.|+|++|+.+|+.|...|++|+.+ |.++    ..   ..+                  +  ....+.++
T Consensus       208 ~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~~~  287 (421)
T 2yfq_A          208 IKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDEE  287 (421)
T ss_dssp             CCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC--------------
T ss_pred             CCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCccc
Confidence            4689999999999999999999999999998854 4442    00   000                  0  00112234


Q ss_pred             hh-cCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          127 LA-VNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       127 l~-~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      ++ ..||+++-|..     .+.|+.+....++ ..+++-.+.+.+- .+ -.+.|+++.+.
T Consensus       288 ~~~~~~DIliP~A~-----~n~i~~~~A~~l~-ak~VvEgAN~P~t-~e-a~~il~~~GI~  340 (421)
T 2yfq_A          288 FWTKEYDIIVPAAL-----ENVITGERAKTIN-AKLVCEAANGPTT-PE-GDKVLTERGIN  340 (421)
T ss_dssp             -------CEEECSC-----SSCSCHHHHTTCC-CSEEECCSSSCSC-HH-HHHHHHHHTCE
T ss_pred             hhcCCccEEEEcCC-----cCcCCcccHHHcC-CeEEEeCCccccC-HH-HHHHHHHCCCE
Confidence            43 36888877753     5568888888884 5788888888875 33 34556666654

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=96.95  E-value=0.0019  Score=54.92  Aligned_cols=104  Identities=13%  Similarity=0.161  Sum_probs=67.6

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHhCCCE-EEEEcCCC--CCCCCcccccChhhhhc--C-CcEEEEeccCChhhhhccCHH
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQAFGFI-ISYNSRRK--RPSVLFPYCANVYDLAV--N-SDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~~G~~-V~~~~~~~--~~~~~~~~~~~l~el~~--~-aDiv~~~~p~t~~t~~li~~~  151 (223)
                      ..++.|+|. |++|+.+++.+...|++ |..+++..  ....+...+.+++++..  . .|++++++|. +.+...+ ++
T Consensus        13 ~~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~~DvaIi~vp~-~~~~~~v-~e   90 (297)
T 2yv2_A           13 ETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPA-PFAPDAV-YE   90 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHCTTCCEEEECCCG-GGHHHHH-HH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCCEEEEecCH-HHHHHHH-HH
Confidence            345777798 99999999999988998 34566543  12234555788999887  5 9999999984 3344443 23


Q ss_pred             HHhcCCCCcEEEEcCCCc-ccCHHHHHHHHHcCCce
Q 035615          152 VMAELGKGGMIINVGRGA-LIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       152 ~l~~mk~ga~lIN~arg~-~vd~~al~~aL~~~~i~  186 (223)
                      ..+ .... .+|.++.|= ..+++.|.++.++..+.
T Consensus        91 a~~-~Gi~-~vVi~t~G~~~~~~~~l~~~A~~~gi~  124 (297)
T 2yv2_A           91 AVD-AGIR-LVVVITEGIPVHDTMRFVNYARQKGAT  124 (297)
T ss_dssp             HHH-TTCS-EEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHH-CCCC-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            332 2222 244455442 23466888888876664

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=96.94  E-value=0.0051  Score=52.59  Aligned_cols=98  Identities=12%  Similarity=0.162  Sum_probs=71.0

Q ss_pred             ccCCCEEEEEec---ChHHHHHHHHHHhC-CCEEEEEcCCCCCCC----------C--cccccChhhhhcCCcEEEEecc
Q 035615           76 KLGGMQVGIVRL---GNIGSEVLNRLQAF-GFIISYNSRRKRPSV----------L--FPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        76 ~l~g~~vgIiG~---G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      .+.|++|+++|=   |++.++.+..+..+ |++|.+..|..-...          +  +....+++|.++.+|+|..-.=
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~  230 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV  230 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC-
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCc
Confidence            378999999996   69999999999999 999998876542211          1  1234789999999999987642


Q ss_pred             CCh----h------hhhccCHHHHhcCCCCcEEEEcC-CCcccCH
Q 035615          140 LTE----Q------THHIINKDVMAELGKGGMIINVG-RGALIDE  173 (223)
Q Consensus       140 ~t~----~------t~~li~~~~l~~mk~ga~lIN~a-rg~~vd~  173 (223)
                      -.+    +      ...-++++.++.+|++++|.-+. ||.=|+.
T Consensus       231 q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lPrg~EI~~  275 (310)
T 3csu_A          231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIAT  275 (310)
T ss_dssp             ----------------CCBCGGGGTTCCTTCEEECCSCCSSSBCH
T ss_pred             cccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCCCCCCeecH
Confidence            111    1      13557889999999999999877 4443433

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.94  E-value=0.0014  Score=52.79  Aligned_cols=68  Identities=16%  Similarity=0.138  Sum_probs=49.9

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cc-cc-----ccChhhhhcCCcEEEEeccCC
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LF-PY-----CANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~-~~-----~~~l~el~~~aDiv~~~~p~t  141 (223)
                      ...+.||+|.|.|. |.||+.+++.|...|++|++.+|++....     +. ..     ..++.+.+...|+|+.+....
T Consensus        16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~   95 (236)
T 3e8x_A           16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG   95 (236)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred             ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence            35689999999997 99999999999999999999998765321     11 10     145677888999999887643

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.94  E-value=0.0013  Score=52.46  Aligned_cols=62  Identities=16%  Similarity=0.229  Sum_probs=48.3

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCCC----------ccc-ccChhhhhcCCcEEEEeccCC
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSVL----------FPY-CANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~----------~~~-~~~l~el~~~aDiv~~~~p~t  141 (223)
                      ++|.|.| .|.||+.+++.|...|++|++.+|++.....          ... ..++.++++..|+|+.+....
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~   74 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSG   74 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCT
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCC
Confidence            4789999 7999999999999999999999988654321          112 234567788999999888654

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=96.94  E-value=0.0013  Score=56.84  Aligned_cols=99  Identities=19%  Similarity=0.227  Sum_probs=61.8

Q ss_pred             CEEEEEecChHHHHHHHHHHhC---------CCEEE-EEcCCCCCCCCc---ccccChhhhhcCCcEEEEeccCChhhhh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF---------GFIIS-YNSRRKRPSVLF---PYCANVYDLAVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~---------G~~V~-~~~~~~~~~~~~---~~~~~l~el~~~aDiv~~~~p~t~~t~~  146 (223)
                      .+|||||+|.||+.+++.++..         +++|. +++++..+..+.   ..+.++++++ +.|+|+.++|.......
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~~~~~~~d~~~ll-~iDvVve~t~~~~~a~~   82 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQELLRAEPFDLL-EADLVVEAMGGVEAPLR   82 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSCGGGEESSCCCCT-TCSEEEECCCCSHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccCcccccCCHHHHh-CCCEEEECCCCcHHHHH
Confidence            4799999999999999988765         45654 567765443322   2356888888 99999999985422121


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcC
Q 035615          147 IINKDVMAELGKGGMIINVGRGAL-IDEKEMLQFLVQG  183 (223)
Q Consensus       147 li~~~~l~~mk~ga~lIN~arg~~-vd~~al~~aL~~~  183 (223)
                      .    ..+.|+.|.-+|...-..+ -.-+.|.++.+++
T Consensus        83 ~----~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           83 L----VLPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             H----HHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             H----HHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence            1    1223445555555322222 2445666666555

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=96.93  E-value=0.0024  Score=55.15  Aligned_cols=92  Identities=10%  Similarity=0.038  Sum_probs=70.4

Q ss_pred             ccCCCEEEEEecC--hHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEe
Q 035615           76 KLGGMQVGIVRLG--NIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        76 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~  137 (223)
                      .+.|.+|+++|=|  ++.++++..+..+|++|.+..|..-...              +  .....++++.++.+|+|..-
T Consensus       152 ~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (333)
T 1duv_G          152 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD  231 (333)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeC
Confidence            4889999999975  9999999999999999998877532211              1  22367899999999999884


Q ss_pred             ccC-----C---hh-----hhhccCHHHHhcC-CCCcEEEEcCC
Q 035615          138 CAL-----T---EQ-----THHIINKDVMAEL-GKGGMIINVGR  167 (223)
Q Consensus       138 ~p~-----t---~~-----t~~li~~~~l~~m-k~ga~lIN~ar  167 (223)
                      .=.     .   ++     ...-++.+.++.+ |++++|.-+.-
T Consensus       232 ~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP  275 (333)
T 1duv_G          232 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLP  275 (333)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSC
T ss_pred             CccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCCC
Confidence            420     0   11     1356799999999 99999998875

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.93  E-value=0.0016  Score=51.41  Aligned_cols=89  Identities=16%  Similarity=0.241  Sum_probs=57.8

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC----Cccc-ccCh----hhhhcCCcEEEEeccCChhhhh---
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LFPY-CANV----YDLAVNSDVLVVCCALTEQTHH---  146 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~~-~~~l----~el~~~aDiv~~~~p~t~~t~~---  146 (223)
                      ++|.|.| .|.||+.+++.|...|++|.+.+|++....    .... ..++    .+.+..+|+|+.+.........   
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~   80 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEKHV   80 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTSHH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhhhhhcCCCEEEECCcCCccccchHH
Confidence            5799999 599999999999999999999998764321    1110 0111    1678899999988865432111   


Q ss_pred             ccCHHHHhcCCC--CcEEEEcCCC
Q 035615          147 IINKDVMAELGK--GGMIINVGRG  168 (223)
Q Consensus       147 li~~~~l~~mk~--ga~lIN~arg  168 (223)
                      ......++.|++  ...+|++|..
T Consensus        81 ~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           81 TSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             HHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             HHHHHHHHHHHhcCCceEEEEecc
Confidence            112345555554  3567777754

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.93  E-value=0.0015  Score=54.87  Aligned_cols=61  Identities=15%  Similarity=0.235  Sum_probs=46.1

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHh-CCCEEE-EEcCCCCCCC------------CcccccChhhhhcCCcEEEEecc
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQA-FGFIIS-YNSRRKRPSV------------LFPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~-~G~~V~-~~~~~~~~~~------------~~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      -.+|+|+| +|+||+.+++.+.. -++++. +++++.....            +...+.++++++.++|+|+-+.+
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~   82 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL   82 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC
Confidence            36899999 89999999998875 477866 4787643211            23345789999999999988764

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.93  E-value=0.0012  Score=56.94  Aligned_cols=110  Identities=17%  Similarity=0.200  Sum_probs=65.8

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC-------Cc-------ccccChhhhhcCCcEEEEeccCCh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV-------LF-------PYCANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-------~~-------~~~~~l~el~~~aDiv~~~~p~t~  142 (223)
                      .++|+|||.|.+|..++..+...+.  ++..+|...++.+       ..       ....+..+.++.||+|+++.+...
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~~   88 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAPQ   88 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            4799999999999999999876665  7999998653221       10       111244677999999999986432


Q ss_pred             h---hh--------hccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCceEE
Q 035615          143 Q---TH--------HIIN--KDVMAELGKGGMIINVGRGALIDEKEMLQF--LVQGDINGV  188 (223)
Q Consensus       143 ~---t~--------~li~--~~~l~~mk~ga~lIN~arg~~vd~~al~~a--L~~~~i~~a  188 (223)
                      .   ++        .++.  .+.+....|++++|+++.--=+....+.+.  +...++.|.
T Consensus        89 k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~  149 (326)
T 2zqz_A           89 KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGS  149 (326)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEEc
Confidence            1   10        1110  122333468999999843222223333333  233355554

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.93  E-value=0.0027  Score=55.04  Aligned_cols=82  Identities=12%  Similarity=0.052  Sum_probs=52.4

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCC-CEEEEEcCCCCCCC----------C--cccccChhhhhcCCcEEEEeccCChhhh
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFG-FIISYNSRRKRPSV----------L--FPYCANVYDLAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDiv~~~~p~t~~t~  145 (223)
                      ++|+|+| +|.||+.+.+.|.... +++..+.+......          +  .....++++ +..+|+|+.|+|.... .
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~s-~   82 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGVF-A   82 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTHH-H
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHHH-H
Confidence            5899999 8999999999998654 47665543322211          0  011223444 4789999999996532 2


Q ss_pred             hccCHHHHhcCCCCcEEEEcCC
Q 035615          146 HIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      ... ..   .++.|+.+|+.+-
T Consensus        83 ~~a-~~---~~~aG~~VId~Sa  100 (345)
T 2ozp_A           83 REF-DR---YSALAPVLVDLSA  100 (345)
T ss_dssp             HTH-HH---HHTTCSEEEECSS
T ss_pred             HHH-HH---HHHCCCEEEEcCc
Confidence            221 22   2467888998875

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.92  E-value=0.0013  Score=56.50  Aligned_cols=85  Identities=20%  Similarity=0.218  Sum_probs=59.2

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc-ccChhhhhcCCcEEEEeccCChhhhhccCHH
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY-CANVYDLAVNSDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~-~~~l~el~~~aDiv~~~~p~t~~t~~li~~~  151 (223)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++++.+     ++.. ..+.+++.+..|+|+-++.....     -..
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~-----~~~  250 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYD-----LKD  250 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCC-----HHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHH-----HHH
Confidence            488999999999999999999999999999988776532     2211 12333444478999888763311     134


Q ss_pred             HHhcCCCCcEEEEcCC
Q 035615          152 VMAELGKGGMIINVGR  167 (223)
Q Consensus       152 ~l~~mk~ga~lIN~ar  167 (223)
                      .++.++++..++.++.
T Consensus       251 ~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          251 YLKLLTYNGDLALVGL  266 (348)
T ss_dssp             HHTTEEEEEEEEECCC
T ss_pred             HHHHHhcCCEEEEECC
Confidence            5566677777776654

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.91  E-value=0.0014  Score=56.18  Aligned_cols=90  Identities=16%  Similarity=0.201  Sum_probs=60.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCC--CCCC---------------Cc-ccccChhhhhcCCcEEEEec
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRK--RPSV---------------LF-PYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~--~~~~---------------~~-~~~~~l~el~~~aDiv~~~~  138 (223)
                      ..++|+|||.|.||..+|..+...|. +|..+|+.+  ....               .. ....+-.+.++.||+|+++.
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaa   86 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITA   86 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeC
Confidence            46899999999999999999998899 999999983  2111               00 01122246789999999997


Q ss_pred             cCC--hh-hh-hcc--C----H---HHHhcCCCCcEEEEcCC
Q 035615          139 ALT--EQ-TH-HII--N----K---DVMAELGKGGMIINVGR  167 (223)
Q Consensus       139 p~t--~~-t~-~li--~----~---~~l~~mk~ga~lIN~ar  167 (223)
                      ...  |. ++ .++  |    +   +.+....|++++++++.
T Consensus        87 g~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN  128 (315)
T 3tl2_A           87 GIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN  128 (315)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence            422  21 11 112  1    1   22333468899999984

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.91  E-value=0.003  Score=50.83  Aligned_cols=65  Identities=22%  Similarity=0.219  Sum_probs=50.6

Q ss_pred             cCCCEEEEEe-cChHHHHHHHHHHhCCC--EEEEEcCCCCCCCC------------cccccChhhhhcCCcEEEEeccCC
Q 035615           77 LGGMQVGIVR-LGNIGSEVLNRLQAFGF--IISYNSRRKRPSVL------------FPYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        77 l~g~~vgIiG-~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~------------~~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      +.+|++.|.| .|.||+.+++.|...|+  +|++.+|++.....            .....+++++++..|+|+.+....
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            5689999999 69999999999999999  99999887654321            111245667788999999887644

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=96.89  E-value=0.00067  Score=61.37  Aligned_cols=110  Identities=11%  Similarity=0.061  Sum_probs=69.1

Q ss_pred             CCEEEEEecChH-HHHHHHHHHhC-----CCEEEEEcCCCCCCC-----------------CcccccChhhhhcCCcEEE
Q 035615           79 GMQVGIVRLGNI-GSEVLNRLQAF-----GFIISYNSRRKRPSV-----------------LFPYCANVYDLAVNSDVLV  135 (223)
Q Consensus        79 g~~vgIiG~G~i-G~~~a~~l~~~-----G~~V~~~~~~~~~~~-----------------~~~~~~~l~el~~~aDiv~  135 (223)
                      .++|+|||.|.. |.++|..|...     +.+|..||+.++..+                 ......++++.++.||+|+
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV  107 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM  107 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence            469999999998 66677655544     567999998764311                 0112357778899999999


Q ss_pred             EeccCChh---hh----------------------------hccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 035615          136 VCCALTEQ---TH----------------------------HIIN--KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQ  182 (223)
Q Consensus       136 ~~~p~t~~---t~----------------------------~li~--~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~  182 (223)
                      +++|....   ++                            .++.  .+.+....|++++||++.---+-..++.+....
T Consensus       108 iaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~p~  187 (472)
T 1u8x_X          108 AHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN  187 (472)
T ss_dssp             ECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHSTT
T ss_pred             EcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCCC
Confidence            99985321   11                            0110  123444568999999987654444455444433


Q ss_pred             CCceEE
Q 035615          183 GDINGV  188 (223)
Q Consensus       183 ~~i~~a  188 (223)
                      .++.|.
T Consensus       188 ~rViG~  193 (472)
T 1u8x_X          188 SKILNI  193 (472)
T ss_dssp             CCEEEC
T ss_pred             CCEEEe
Confidence            355543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.88  E-value=0.005  Score=52.02  Aligned_cols=105  Identities=11%  Similarity=0.069  Sum_probs=73.8

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC--CCCcccccChhhhhcCCcEEEEeccCCh----------hh
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP--SVLFPYCANVYDLAVNSDVLVVCCALTE----------QT  144 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~--~~~~~~~~~l~el~~~aDiv~~~~p~t~----------~t  144 (223)
                      ++|++|.++|........++.|...|++|.+.......  ..+.....++.+.++++|+|+.-.|...          .+
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~~   84 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSNE   84 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCSS
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCcccccccccC
Confidence            67899999999999999999999999999876432221  1122334556778889999987443221          12


Q ss_pred             hhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          145 HHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      ...++++.++.+++..+++ +   . +|..++.+++.+.++.
T Consensus        85 ~~~~~~~~l~~~~~l~~i~-~---g-~~~~d~~~~~~~~gi~  121 (300)
T 2rir_A           85 EVVLKQDHLDRTPAHCVIF-S---G-ISNAYLENIAAQAKRK  121 (300)
T ss_dssp             CEECCHHHHHTSCTTCEEE-E---S-SCCHHHHHHHHHTTCC
T ss_pred             CccchHHHHhhcCCCCEEE-E---e-cCCHHHHHHHHHCCCE
Confidence            3337888999999988877 3   2 3667766777777776

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=96.88  E-value=0.0044  Score=54.13  Aligned_cols=91  Identities=10%  Similarity=0.107  Sum_probs=68.8

Q ss_pred             cCCCEEEEEecC--hHHHHHHHHHHhCCCEEEEEcCCCCCC--C--------------C--cccccChhhhhcCCcEEEE
Q 035615           77 LGGMQVGIVRLG--NIGSEVLNRLQAFGFIISYNSRRKRPS--V--------------L--FPYCANVYDLAVNSDVLVV  136 (223)
Q Consensus        77 l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~--~--------------~--~~~~~~l~el~~~aDiv~~  136 (223)
                      +.|++|+++|=+  ++.++.+..+..+|++|.+..|..-..  .              +  +....+++|.++.+|+|..
T Consensus       178 l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVyt  257 (365)
T 4amu_A          178 LKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIYT  257 (365)
T ss_dssp             CTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEEE
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEEe
Confidence            789999999976  789999999999999999887753221  1              1  2235789999999999987


Q ss_pred             ec--cCCh--h---------hhhccCHHHHhcCCCCcEEEEcCC
Q 035615          137 CC--ALTE--Q---------THHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       137 ~~--p~t~--~---------t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      -+  ...+  +         ...-++.+.++.+|++++|.-+.-
T Consensus       258 d~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcLP  301 (365)
T 4amu_A          258 DVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCLP  301 (365)
T ss_dssp             CCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECSC
T ss_pred             cccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCC
Confidence            42  1111  1         124579999999999999998874

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.88  E-value=0.00071  Score=58.18  Aligned_cols=62  Identities=15%  Similarity=0.232  Sum_probs=46.2

Q ss_pred             CEEEEEecChHHHH-HHHHHHhC-CCEEE-EEcCCCCCCC------Cc-ccccChhhhhc--CCcEEEEeccCC
Q 035615           80 MQVGIVRLGNIGSE-VLNRLQAF-GFIIS-YNSRRKRPSV------LF-PYCANVYDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~~------~~-~~~~~l~el~~--~aDiv~~~~p~t  141 (223)
                      .+|||||+|.||+. .+..++.. +++|. ++|++++...      +. ..+.+++++++  +.|+|++++|..
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~   97 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTS   97 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGG
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCc
Confidence            48999999999986 46677665 67865 6788765432      22 34689999985  479999999854

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.83  E-value=0.0011  Score=58.84  Aligned_cols=61  Identities=18%  Similarity=0.220  Sum_probs=46.0

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------CcccccChhhhhcCCcEEEE
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------LFPYCANVYDLAVNSDVLVV  136 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~el~~~aDiv~~  136 (223)
                      -+.|++|+|+|-|.+|+.+++.++.+|++|+++|+.+....          .......+.++++++|+|+.
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~  102 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST  102 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999999999999987654311          01111234566678898874

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=96.82  E-value=0.00076  Score=60.23  Aligned_cols=63  Identities=19%  Similarity=0.262  Sum_probs=48.9

Q ss_pred             CCEEEEEec----ChHHHHHHHHHHhC--CCEE-EEEcCCCCCCC------Cc---ccccChhhhhc--CCcEEEEeccC
Q 035615           79 GMQVGIVRL----GNIGSEVLNRLQAF--GFII-SYNSRRKRPSV------LF---PYCANVYDLAV--NSDVLVVCCAL  140 (223)
Q Consensus        79 g~~vgIiG~----G~iG~~~a~~l~~~--G~~V-~~~~~~~~~~~------~~---~~~~~l~el~~--~aDiv~~~~p~  140 (223)
                      -.+|||||+    |.||+..++.++..  ++++ .++|+++....      +.   ..+.+++++++  +.|+|++++|.
T Consensus        20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~   99 (438)
T 3btv_A           20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQV   99 (438)
T ss_dssp             CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCH
T ss_pred             CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCc
Confidence            358999999    99999999999887  7786 47787764321      22   24678999986  68999999984


Q ss_pred             C
Q 035615          141 T  141 (223)
Q Consensus       141 t  141 (223)
                      .
T Consensus       100 ~  100 (438)
T 3btv_A          100 A  100 (438)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.81  E-value=0.003  Score=56.72  Aligned_cols=97  Identities=18%  Similarity=0.229  Sum_probs=69.1

Q ss_pred             cccCCCEEEEEecC----------hHHHHHHHHHHhCCCEEEEEcCCCCCC-----CCcccccChhhhhcCCcEEEEecc
Q 035615           75 FKLGGMQVGIVRLG----------NIGSEVLNRLQAFGFIISYNSRRKRPS-----VLFPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        75 ~~l~g~~vgIiG~G----------~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      ..+.|++|+|+|+-          .-...+++.|...|++|.+|||.-...     .+.....++++.++.+|.|++++.
T Consensus       318 ~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~  397 (446)
T 4a7p_A          318 GDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVTE  397 (446)
T ss_dssp             SCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECSC
T ss_pred             ccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEeeC
Confidence            45889999999986          667899999999999999999876321     123345678899999999999987


Q ss_pred             CChhhhhccCHHH-HhcCCCCcEEEEcCCCcccCHHHH
Q 035615          140 LTEQTHHIINKDV-MAELGKGGMIINVGRGALIDEKEM  176 (223)
Q Consensus       140 ~t~~t~~li~~~~-l~~mk~ga~lIN~arg~~vd~~al  176 (223)
                      ..+ -+. ++-+. .+.|+. .+++|+ |+- .|.+.+
T Consensus       398 ~~~-f~~-~d~~~~~~~~~~-~~i~D~-r~~-~~~~~~  430 (446)
T 4a7p_A          398 WDA-FRA-LDLTRIKNSLKS-PVLVDL-RNI-YPPAEL  430 (446)
T ss_dssp             CTT-TTS-CCHHHHHTTBSS-CBEECS-SCC-SCHHHH
T ss_pred             CHH-hhc-CCHHHHHHhcCC-CEEEEC-CCC-CCHHHH
Confidence            543 222 44444 445664 578884 554 455544

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=96.80  E-value=0.005  Score=52.89  Aligned_cols=92  Identities=11%  Similarity=0.105  Sum_probs=69.2

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------CcccccChhhhhcCCcEEEEec
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------LFPYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~~~~~~~l~el~~~aDiv~~~~  138 (223)
                      .+.|.+|++||= .++.++.+..+..+|++|.+..|..-...                .+....+++|.++.+|+|..-+
T Consensus       152 ~l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~  231 (321)
T 1oth_A          152 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT  231 (321)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CcCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEec
Confidence            478999999996 46888888888899999998887543211                1233678999999999998843


Q ss_pred             ----cCChh--------hhhccCHHHHhcCCCCcEEEEcCC
Q 035615          139 ----ALTEQ--------THHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       139 ----p~t~~--------t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                          ....+        ...-++++.++.+|++++|.-+.-
T Consensus       232 w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~lP  272 (321)
T 1oth_A          232 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLP  272 (321)
T ss_dssp             SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSC
T ss_pred             cccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCCC
Confidence                11111        114579999999999999999875

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=96.79  E-value=0.01  Score=53.20  Aligned_cols=105  Identities=17%  Similarity=0.124  Sum_probs=69.5

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEE-EEcCCC-------C--------------C---CCCc------ccccC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIIS-YNSRRK-------R--------------P---SVLF------PYCAN  123 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~-------~--------------~---~~~~------~~~~~  123 (223)
                      .+++|+||.|-|+|++|+..|+.|...|.+|+ +.|.+.       -              .   ...+      ..+.+
T Consensus       235 ~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~v~  314 (456)
T 3r3j_A          235 DNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYFE  314 (456)
T ss_dssp             CCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEEEC
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCceEeC
Confidence            45899999999999999999999999999976 444321       0              0   0000      01112


Q ss_pred             hhhhh-cCCcEEEEeccCChhhhhccCHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          124 VYDLA-VNSDVLVVCCALTEQTHHIINKDVMAELG--KGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       124 l~el~-~~aDiv~~~~p~t~~t~~li~~~~l~~mk--~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      .++++ ..||+++-|.     +.+.|+.+..+.+.  .-.+++-.+.+.+-.+ | .+.|.++.|.
T Consensus       315 ~~~i~~~~~DI~iPcA-----~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~e-A-~~iL~~rGI~  373 (456)
T 3r3j_A          315 NQKPWNIPCDIAFPCA-----TQNEINENDADLFIQNKCKMIVEGANMPTHIK-A-LHKLKQNNII  373 (456)
T ss_dssp             SCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHHTCCEEECCSSSCBCTT-H-HHHHHTTTCE
T ss_pred             CccccccCccEEEeCC-----CccchhhHHHHHHHhcCCeEEEecCCCCCCHH-H-HHHHHHCCCE
Confidence            23443 4689887765     36678888777762  2357788888886544 2 3677777765

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=96.78  E-value=0.0037  Score=52.98  Aligned_cols=84  Identities=13%  Similarity=0.092  Sum_probs=54.5

Q ss_pred             CEEEEEe-cChHHHHHHHHHHh-CCCEEE-EEcCCCCCC-------------CCcccccChhhhhcCCcEEEEeccCChh
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQA-FGFIIS-YNSRRKRPS-------------VLFPYCANVYDLAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~-~G~~V~-~~~~~~~~~-------------~~~~~~~~l~el~~~aDiv~~~~p~t~~  143 (223)
                      .+|+|+| +|+||+.+++.+.. -++++. ++++.....             .+...+.++++++.++|+|+-..+ .+.
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~-p~a  100 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ-PQA  100 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC-HHH
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC-HHH
Confidence            5899999 99999999998864 478855 567764321             123345789999999999986653 112


Q ss_pred             hhhccCHHHHhcCCCCcEEEEcCCC
Q 035615          144 THHIINKDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga~lIN~arg  168 (223)
                      +...    ....++.|.-+|-...|
T Consensus       101 ~~~~----~~~~l~~Gv~vViGTTG  121 (288)
T 3ijp_A          101 SVLY----ANYAAQKSLIHIIGTTG  121 (288)
T ss_dssp             HHHH----HHHHHHHTCEEEECCCC
T ss_pred             HHHH----HHHHHHcCCCEEEECCC
Confidence            2221    11223445556655555

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=96.78  E-value=0.0063  Score=52.44  Aligned_cols=99  Identities=14%  Similarity=0.131  Sum_probs=72.5

Q ss_pred             ccCCCEEEEEecC--hHHHHHHHHHHhCCCEEEEEcCCCCC--C----------------CC--cccccChhhhhcCCcE
Q 035615           76 KLGGMQVGIVRLG--NIGSEVLNRLQAFGFIISYNSRRKRP--S----------------VL--FPYCANVYDLAVNSDV  133 (223)
Q Consensus        76 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~--~----------------~~--~~~~~~l~el~~~aDi  133 (223)
                      .+.|++|+++|=+  ++.++.+..+..+|++|.+..|..-.  .                .+  +....+++|.++.+|+
T Consensus       158 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDv  237 (328)
T 3grf_A          158 GFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDV  237 (328)
T ss_dssp             TGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSE
T ss_pred             ccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCE
Confidence            5889999999964  89999999999999999988775432  1                11  2235789999999999


Q ss_pred             EEEe----cc-CCh--------hhhhccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 035615          134 LVVC----CA-LTE--------QTHHIINKDVMAELGKGGMIINVG---RGALIDEK  174 (223)
Q Consensus       134 v~~~----~p-~t~--------~t~~li~~~~l~~mk~ga~lIN~a---rg~~vd~~  174 (223)
                      |..-    +. -.+        ....-++++.++.+|++++|.-+.   ||.=|+.+
T Consensus       238 vytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~lPa~Rg~EI~~e  294 (328)
T 3grf_A          238 VYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCLPATRGEEQTAS  294 (328)
T ss_dssp             EEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCTTTTBCHH
T ss_pred             EEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCCCCCCCCccCHH
Confidence            9863    22 000        123557999999999999999887   56555543

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.77  E-value=0.0022  Score=54.69  Aligned_cols=86  Identities=12%  Similarity=0.184  Sum_probs=56.2

Q ss_pred             EEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCC-----------------cccccChhhhhcCCcEEEEeccCCh
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVL-----------------FPYCANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~-----------------~~~~~~l~el~~~aDiv~~~~p~t~  142 (223)
                      +|+|||.|.+|..++..+...|+ +|..+|+..+...+                 .....+. +.++.||+|+++.+...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~   79 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR   79 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence            58999999999999998876677 69999987653221                 0111344 67899999999965432


Q ss_pred             h-----------hhhccC--HHHHhcCCCCcEEEEcCC
Q 035615          143 Q-----------THHIIN--KDVMAELGKGGMIINVGR  167 (223)
Q Consensus       143 ~-----------t~~li~--~~~l~~mk~ga~lIN~ar  167 (223)
                      .           +..++.  .+.+....|++++|+++.
T Consensus        80 k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (308)
T 2d4a_B           80 KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN  117 (308)
T ss_dssp             CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            1           111110  112333358899999854

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=96.77  E-value=0.0088  Score=53.22  Aligned_cols=104  Identities=14%  Similarity=0.188  Sum_probs=70.5

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEE-EcCCC-----C--CC--------C-Cc------------ccccChh
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISY-NSRRK-----R--PS--------V-LF------------PYCANVY  125 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~-~~~~~-----~--~~--------~-~~------------~~~~~l~  125 (223)
                      .+++|++|.|.|+|++|+.+++.|...|.+|+. .|.+.     .  ..        . +.            ....+.+
T Consensus       206 ~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~  285 (421)
T 1v9l_A          206 GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPD  285 (421)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTT
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCch
Confidence            468999999999999999999999999999874 34321     0  00        0 10            1111334


Q ss_pred             hhhc-CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          126 DLAV-NSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       126 el~~-~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      +++. .||+++-|.     +.+.|+.+..+.++- .+++--+.+.+- .++ .+.|.++.+.
T Consensus       286 ~~~~~~~Dil~P~A-----~~~~I~~~~a~~l~a-k~V~EgAN~p~t-~~a-~~~l~~~Gi~  339 (421)
T 1v9l_A          286 AIFKLDVDIFVPAA-----IENVIRGDNAGLVKA-RLVVEGANGPTT-PEA-ERILYERGVV  339 (421)
T ss_dssp             GGGGCCCSEEEECS-----CSSCBCTTTTTTCCC-SEEECCSSSCBC-HHH-HHHHHTTTCE
T ss_pred             hhhcCCccEEEecC-----cCCccchhhHHHcCc-eEEEecCCCcCC-HHH-HHHHHHCCCE
Confidence            5554 799988776     355677777777753 578888888864 333 4667777775

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.77  E-value=0.00083  Score=56.46  Aligned_cols=39  Identities=15%  Similarity=0.169  Sum_probs=34.9

Q ss_pred             cccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           75 FKLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        75 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .++.|+++.|+| .|.+|+++++.|...|++|++.+|+..
T Consensus       115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~  154 (287)
T 1lu9_A          115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD  154 (287)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHH
Confidence            347899999999 999999999999999999999998753

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.76  E-value=0.0082  Score=53.63  Aligned_cols=88  Identities=8%  Similarity=0.138  Sum_probs=65.2

Q ss_pred             ccCCCEEEEEecC----------hHHHHHHHHHHhC-CCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhh
Q 035615           76 KLGGMQVGIVRLG----------NIGSEVLNRLQAF-GFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQT  144 (223)
Q Consensus        76 ~l~g~~vgIiG~G----------~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t  144 (223)
                      .+.|++|+|+|+-          .-...+++.|... |++|.+|||.-...   ....++++.++.+|.|++++...+ -
T Consensus       312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~---~~~~~~~~~~~~ad~vvi~t~~~~-f  387 (431)
T 3ojo_A          312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD---FVEHDMSHAVKDASLVLILSDHSE-F  387 (431)
T ss_dssp             HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT---TBCSTTHHHHTTCSEEEECSCCGG-G
T ss_pred             hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc---cccCCHHHHHhCCCEEEEecCCHH-H
Confidence            4789999999963          3468899999999 99999999876543   234678899999999999987543 2


Q ss_pred             hhccCHHHHhcCCCCcEEEEcCCCcc
Q 035615          145 HHIINKDVMAELGKGGMIINVGRGAL  170 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~arg~~  170 (223)
                      +. ++.+.++.|+ +.+++|. |+-+
T Consensus       388 ~~-~d~~~~~~~~-~~~i~D~-r~~~  410 (431)
T 3ojo_A          388 KN-LSDSHFDKMK-HKVIFDT-KNVV  410 (431)
T ss_dssp             TS-CCGGGGTTCS-SCEEEES-SCCC
T ss_pred             hc-cCHHHHHhCC-CCEEEEC-CCCC
Confidence            22 3444456676 5688885 5543

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.76  E-value=0.0029  Score=53.57  Aligned_cols=67  Identities=13%  Similarity=-0.013  Sum_probs=49.5

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------Cc-------ccccChhhhhc--CCcEEEE
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV-------LF-------PYCANVYDLAV--NSDVLVV  136 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~-------~~~~~l~el~~--~aDiv~~  136 (223)
                      ..++.+++|.|.|. |.||+.+++.|...|++|++.+|......       ..       ....+++++++  ..|+|+.
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih   94 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVH   94 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEE
Confidence            46789999999996 99999999999999999999988543211       11       11123556677  8899887


Q ss_pred             eccC
Q 035615          137 CCAL  140 (223)
Q Consensus       137 ~~p~  140 (223)
                      +...
T Consensus        95 ~A~~   98 (330)
T 2pzm_A           95 SAAA   98 (330)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            7643

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=96.74  E-value=0.0017  Score=55.98  Aligned_cols=63  Identities=16%  Similarity=0.180  Sum_probs=45.4

Q ss_pred             CEEEEEecChHHHHHHHHHHhC-CCEEE-EEcCCCCCCC------Cc------------------ccccChhhhhcCCcE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF-GFIIS-YNSRRKRPSV------LF------------------PYCANVYDLAVNSDV  133 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~------~~------------------~~~~~l~el~~~aDi  133 (223)
                      .+|||+|+|.||+.+++.+... ++++. +.|++++...      ++                  ....+.++++.+.|+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv   82 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence            4899999999999999998865 56764 4566533211      10                  123578888889999


Q ss_pred             EEEeccCCh
Q 035615          134 LVVCCALTE  142 (223)
Q Consensus       134 v~~~~p~t~  142 (223)
                      |+.|+|...
T Consensus        83 V~~aTp~~~   91 (334)
T 2czc_A           83 IVDATPGGI   91 (334)
T ss_dssp             EEECCSTTH
T ss_pred             EEECCCccc
Confidence            999998553

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=96.73  E-value=0.0016  Score=52.81  Aligned_cols=63  Identities=19%  Similarity=0.155  Sum_probs=45.3

Q ss_pred             CCEEEEEecChHHHHHHHHH--HhCCCEEE-EEcCCCC-CCC-----Ccc--cccChhhhhcC--CcEEEEeccCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRL--QAFGFIIS-YNSRRKR-PSV-----LFP--YCANVYDLAVN--SDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l--~~~G~~V~-~~~~~~~-~~~-----~~~--~~~~l~el~~~--aDiv~~~~p~t  141 (223)
                      .++++|+|.|++|+++++.+  ...|+++. ++|.++. ...     +..  ..+++++++++  .|++++++|..
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~  159 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPST  159 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCGG
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCch
Confidence            46899999999999999973  45688865 6677665 321     221  24677888764  89999999854

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.72  E-value=0.0056  Score=52.17  Aligned_cols=36  Identities=19%  Similarity=-0.083  Sum_probs=30.8

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      ...++|.|.|. |.||+.+++.|...|++|.+.+|+.
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            34678999997 9999999999999999999998876

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.72  E-value=0.00097  Score=57.83  Aligned_cols=88  Identities=23%  Similarity=0.302  Sum_probs=61.3

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCC---CCCC-----Ccccc-c-Chhhhh----cCCcEEEEeccCC
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRK---RPSV-----LFPYC-A-NVYDLA----VNSDVLVVCCALT  141 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~---~~~~-----~~~~~-~-~l~el~----~~aDiv~~~~p~t  141 (223)
                      .+.|++|.|+|.|.||..+++.++.+|++|++.+++.   ++.+     ++... . ++.+.+    ...|+|+.++...
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~  257 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD  257 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence            4679999999999999999999999999999998876   3321     22111 0 111111    3589999888743


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      +..   + +..++.|+++..+|+++-
T Consensus       258 ~~~---~-~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          258 VNI---L-GNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             THH---H-HHHGGGEEEEEEEEECSC
T ss_pred             HHH---H-HHHHHHHhcCCEEEEEec
Confidence            222   0 345677888888888874

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=96.72  E-value=0.0036  Score=54.68  Aligned_cols=92  Identities=12%  Similarity=0.170  Sum_probs=65.0

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhc--C
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE--L  156 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~--m  156 (223)
                      -.++.|+|.|.+++++++.++.+|++|.++|+.+...       + .+-+..+|-++..-|          .+.+..  +
T Consensus       199 ~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~~~-------~-~~~fp~a~~v~~~~p----------~~~~~~~~~  260 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQC-------E-KHFFPDADEIIVDFP----------ADFLRKFLI  260 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGGG-------C-GGGCTTCSEEEESCH----------HHHHHHSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCcccc-------c-cccCCCceEEecCCH----------HHHHhhcCC
Confidence            3579999999999999999999999999998765421       1 122455665554433          122233  5


Q ss_pred             CCCcEEEEcCCCcccCHHHHHHHHHcCCceEEE
Q 035615          157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVG  189 (223)
Q Consensus       157 k~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~  189 (223)
                      .+++.+|=+.++.-.|...|..+|+. ...+.+
T Consensus       261 ~~~t~vvv~TH~h~~D~~~L~~aL~~-~~~YiG  292 (362)
T 3on5_A          261 RPDDFVLIMTHHFQKDQEILHFLLEK-ELRYIG  292 (362)
T ss_dssp             CTTCEEEECCSCHHHHHHHHHHHSSS-CCSEEE
T ss_pred             CCCeEEEEEeCCchhhHHHHHHHhcC-CCCEEE
Confidence            67788888888888888888888876 344333

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.72  E-value=0.0016  Score=56.25  Aligned_cols=87  Identities=25%  Similarity=0.227  Sum_probs=59.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc---c--c-Chhh-hhcCCcEEEEeccCChhhh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY---C--A-NVYD-LAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~---~--~-~l~e-l~~~aDiv~~~~p~t~~t~  145 (223)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++++.+     ++..   .  . ++.+ +....|+|+-+++.++  .
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~--~  256 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT--D  256 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST--T
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCc--H
Confidence            488999999999999999999999999999988766532     2211   1  1 2222 2246899999887521  1


Q ss_pred             hccCHHHHhcCCCCcEEEEcCC
Q 035615          146 HIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      ..+ ...++.++++..++.++.
T Consensus       257 ~~~-~~~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          257 IDF-NIMPKAMKVGGRIVSISI  277 (360)
T ss_dssp             CCT-TTGGGGEEEEEEEEECCC
T ss_pred             HHH-HHHHHHhcCCCEEEEecC
Confidence            112 345566777777777653

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.71  E-value=0.0037  Score=54.17  Aligned_cols=65  Identities=18%  Similarity=0.253  Sum_probs=46.3

Q ss_pred             CCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615           33 ADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR  111 (223)
Q Consensus        33 ~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  111 (223)
                      ..+...||-++-+=|-+.|.          ..|...    -...|++++|.|||.|.+|..+|+.|...|. ++..+|+.
T Consensus         2 ~~p~~~~~~~~~lnl~lm~w----------Rll~~~----g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A            2 SDPLKIADQSVDLNLKLMKW----------RILPDL----NLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             -CHHHHHHHHHHHHHHHHHH----------HTCTTC----CHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHHHHH----------hhcchh----hHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            34456777777766655542          223221    1246899999999999999999999999998 57777764

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.71  E-value=0.0028  Score=50.29  Aligned_cols=89  Identities=11%  Similarity=0.115  Sum_probs=57.6

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc-ccCh----hhhhcCCcEEEEeccCC--h---h
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY-CANV----YDLAVNSDVLVVCCALT--E---Q  143 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~-~~~l----~el~~~aDiv~~~~p~t--~---~  143 (223)
                      ++|.|.|. |.||+.+++.|...|++|++.+|++....     +... ..++    .+.+..+|+|+.+....  +   .
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~   80 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGRGY   80 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSCTH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCccCCCcchhh
Confidence            47999996 99999999999999999999988754321     1110 0111    16788999999887542  1   1


Q ss_pred             hhhccCHHHHhcCC-CCcEEEEcCCC
Q 035615          144 THHIINKDVMAELG-KGGMIINVGRG  168 (223)
Q Consensus       144 t~~li~~~~l~~mk-~ga~lIN~arg  168 (223)
                      ..-......++.|+ .+..+|++|..
T Consensus        81 ~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           81 LHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             HHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             HHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            11111244555564 34678888753

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=96.71  E-value=0.00065  Score=59.55  Aligned_cols=62  Identities=13%  Similarity=0.138  Sum_probs=48.4

Q ss_pred             CEEEEEecC-hHHHHHHHHHHhC-CCEEE-EEcCCCCCCC------CcccccChhhhhc--CCcEEEEeccCC
Q 035615           80 MQVGIVRLG-NIGSEVLNRLQAF-GFIIS-YNSRRKRPSV------LFPYCANVYDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        80 ~~vgIiG~G-~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~------~~~~~~~l~el~~--~aDiv~~~~p~t  141 (223)
                      .+|||||+| .+|+..++.+... ++++. ++|+++....      +...+.+++++++  +.|+|++++|..
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~   75 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQ   75 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGG
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcH
Confidence            589999999 9999999998875 66765 6787764322      3445789999987  499999999854

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=96.69  E-value=0.0018  Score=55.32  Aligned_cols=88  Identities=17%  Similarity=0.218  Sum_probs=57.0

Q ss_pred             CEEEEEecChHHHHHHHHHHhCC--CEEEEEcCCCCCCC-------C-------cccccChhhhhcCCcEEEEeccCChh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFG--FIISYNSRRKRPSV-------L-------FPYCANVYDLAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~-------~-------~~~~~~l~el~~~aDiv~~~~p~t~~  143 (223)
                      ++|+|||.|.+|..++..+...+  -++..+|...++.+       .       .....+..+.++.||+|+++.+....
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~   80 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR   80 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            58999999999999999988766  47999998753221       1       01111335678999999999864321


Q ss_pred             ---h--------hhccC--HHHHhcCCCCcEEEEcCC
Q 035615          144 ---T--------HHIIN--KDVMAELGKGGMIINVGR  167 (223)
Q Consensus       144 ---t--------~~li~--~~~l~~mk~ga~lIN~ar  167 (223)
                         +        ..++.  .+.+....|.+++|+++.
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (310)
T 2xxj_A           81 PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN  117 (310)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence               1        11110  122333478999999844

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=96.69  E-value=0.0022  Score=55.78  Aligned_cols=83  Identities=13%  Similarity=0.251  Sum_probs=51.3

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCC-CEEEEEc--CCCCCCC-----C-c---------c--cc--cChhhhhc-CCcEEE
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFG-FIISYNS--RRKRPSV-----L-F---------P--YC--ANVYDLAV-NSDVLV  135 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G-~~V~~~~--~~~~~~~-----~-~---------~--~~--~~l~el~~-~aDiv~  135 (223)
                      .+|+|+| +|.+|+.+++.|.... ++|.++.  +......     + .         .  .+  .+.+++++ .+|+|+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~   88 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF   88 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence            5899999 9999999999997654 5776553  2221110     0 0         0  01  14455556 899999


Q ss_pred             EeccCChhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          136 VCCALTEQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       136 ~~~p~t~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      +|+|... +.... ...   ++.|..+|+.+-
T Consensus        89 ~atp~~~-~~~~a-~~~---~~aG~~VId~s~  115 (354)
T 1ys4_A           89 SALPSDL-AKKFE-PEF---AKEGKLIFSNAS  115 (354)
T ss_dssp             ECCCHHH-HHHHH-HHH---HHTTCEEEECCS
T ss_pred             ECCCchH-HHHHH-HHH---HHCCCEEEECCc
Confidence            9998432 22221 222   356888998874

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=96.69  E-value=0.0019  Score=55.70  Aligned_cols=106  Identities=12%  Similarity=0.158  Sum_probs=64.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhC--------CCEEE-EEcCCCCCCCC-c---------------cccc---Chhhhh-cC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF--------GFIIS-YNSRRKRPSVL-F---------------PYCA---NVYDLA-VN  130 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~--------G~~V~-~~~~~~~~~~~-~---------------~~~~---~l~el~-~~  130 (223)
                      .+|||||+|.||+.+++.+...        +++|. ++|++...... .               ..+.   ++++++ .+
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~   86 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD   86 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence            5799999999999999988653        35654 56766543221 1               0123   788877 46


Q ss_pred             CcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCce
Q 035615          131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALI-DEKEMLQFLVQGDIN  186 (223)
Q Consensus       131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~v-d~~al~~aL~~~~i~  186 (223)
                      .|+|+.++|.. .+...--+-..+.++.|.-+|...-..+. +-+.|.++.++++..
T Consensus        87 iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~  142 (331)
T 3c8m_A           87 FDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRR  142 (331)
T ss_dssp             CSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCE
Confidence            89999999964 11111111233445667777765444432 345666666665543

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=96.69  E-value=0.0043  Score=54.05  Aligned_cols=92  Identities=15%  Similarity=0.132  Sum_probs=70.3

Q ss_pred             ccCCCEEEEEecC--hHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEe
Q 035615           76 KLGGMQVGIVRLG--NIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        76 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~  137 (223)
                      .+.|.+|+++|=|  ++.++++..+..+|++|.+..|..-...              +  +....+++|.++.+|+|..-
T Consensus       173 ~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  252 (359)
T 2w37_A          173 KLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTD  252 (359)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEc
Confidence            4789999999975  9999999999999999998876532211              1  22367899999999999874


Q ss_pred             cc--CC---hh------hhhccCHHHHhcCC---CCcEEEEcCC
Q 035615          138 CA--LT---EQ------THHIINKDVMAELG---KGGMIINVGR  167 (223)
Q Consensus       138 ~p--~t---~~------t~~li~~~~l~~mk---~ga~lIN~ar  167 (223)
                      .=  ..   ..      ...-++.+.++.+|   ++++|.-+.-
T Consensus       253 ~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcLP  296 (359)
T 2w37_A          253 VWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLP  296 (359)
T ss_dssp             CSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECSC
T ss_pred             ccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCCC
Confidence            42  00   11      23567999999999   9999998875

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=96.69  E-value=0.00081  Score=59.29  Aligned_cols=62  Identities=10%  Similarity=0.099  Sum_probs=46.5

Q ss_pred             CEEEEEecChHHHHHHHHHHhC---------CCEEE-EEcCCCCCCC------Cc-ccccChhhhhc--CCcEEEEeccC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF---------GFIIS-YNSRRKRPSV------LF-PYCANVYDLAV--NSDVLVVCCAL  140 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~---------G~~V~-~~~~~~~~~~------~~-~~~~~l~el~~--~aDiv~~~~p~  140 (223)
                      .+|||||+|.||+.-++.++..         +++|. ++|++++..+      +. ..+.+++++++  +.|+|++++|.
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~  106 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN  106 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence            4899999999999988887753         45654 6787765432      22 34689999986  57999999985


Q ss_pred             C
Q 035615          141 T  141 (223)
Q Consensus       141 t  141 (223)
                      .
T Consensus       107 ~  107 (412)
T 4gqa_A          107 H  107 (412)
T ss_dssp             G
T ss_pred             H
Confidence            4

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.68  E-value=0.0025  Score=54.15  Aligned_cols=67  Identities=13%  Similarity=0.095  Sum_probs=46.7

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccC
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      ..++.+|+|.|.|. |.||+.+++.|...|++|++.+|......      +.....++.++++.+|+|+.+...
T Consensus        14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~   87 (347)
T 4id9_A           14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF   87 (347)
T ss_dssp             -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence            45688999999997 99999999999999999999988765411      111234466788899999877643

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.66  E-value=0.002  Score=57.71  Aligned_cols=110  Identities=11%  Similarity=0.091  Sum_probs=71.0

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC---------CCcccc--cChhhhhcC-CcEEEEec--c-C
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS---------VLFPYC--ANVYDLAVN-SDVLVVCC--A-L  140 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---------~~~~~~--~~l~el~~~-aDiv~~~~--p-~  140 (223)
                      ++.|++|.|||+|..|.++|+.|+..|++|.++|......         .+....  ...++++.. +|+|++.-  | .
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~   85 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYN   85 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTT
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCC
Confidence            4789999999999999999999999999999999865311         122111  123346666 89998863  2 2


Q ss_pred             Chhhh-------hccCH-HHHhcC-CCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 035615          141 TEQTH-------HIINK-DVMAEL-GKGGMIINVGRGALIDEKEMLQFLVQGDI  185 (223)
Q Consensus       141 t~~t~-------~li~~-~~l~~m-k~ga~lIN~arg~~vd~~al~~aL~~~~i  185 (223)
                      +|...       .++.+ +++..+ +...+-|--+.|+.--..-+...|++...
T Consensus        86 ~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~  139 (451)
T 3lk7_A           86 NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQ  139 (451)
T ss_dssp             SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred             ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            22211       13443 344333 33334455557888777777788876544

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=96.63  E-value=0.0011  Score=57.05  Aligned_cols=63  Identities=19%  Similarity=0.162  Sum_probs=48.6

Q ss_pred             CCEEEEEecC-hHHHHHHHHHHhC--CCEE-EEEcCCCCCCC------Cc-ccccChhhhhc--CCcEEEEeccCC
Q 035615           79 GMQVGIVRLG-NIGSEVLNRLQAF--GFII-SYNSRRKRPSV------LF-PYCANVYDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~G-~iG~~~a~~l~~~--G~~V-~~~~~~~~~~~------~~-~~~~~l~el~~--~aDiv~~~~p~t  141 (223)
                      -.+|||||+| .+|+..++.++..  ++++ .++|++++...      +. ..+.+++++++  +.|+|++++|..
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~   93 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVE   93 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGG
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence            4589999999 8999999999876  5676 57788765432      22 34688999986  589999999844

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=96.63  E-value=0.0031  Score=54.56  Aligned_cols=62  Identities=18%  Similarity=0.179  Sum_probs=41.4

Q ss_pred             CEEEEEecChHHHHHHHHHHhC-CCEEE-EEcCCCCCCC------Ccccc-----------------cChhhhhcCCcEE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF-GFIIS-YNSRRKRPSV------LFPYC-----------------ANVYDLAVNSDVL  134 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~------~~~~~-----------------~~l~el~~~aDiv  134 (223)
                      .+|||+|+|.||+.+++.+... ++++. +.++++....      +...+                 .++++++.++|+|
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            3799999999999999998764 56765 4565432210      11111                 1334555679999


Q ss_pred             EEeccCC
Q 035615          135 VVCCALT  141 (223)
Q Consensus       135 ~~~~p~t  141 (223)
                      +.|+|..
T Consensus        82 ~~aTp~~   88 (340)
T 1b7g_O           82 VDTTPNG   88 (340)
T ss_dssp             EECCSTT
T ss_pred             EECCCCc
Confidence            9999854

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.62  E-value=0.0018  Score=56.31  Aligned_cols=85  Identities=19%  Similarity=0.228  Sum_probs=58.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc---ccC---hhhhhcCCcEEEEeccCChhhhh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY---CAN---VYDLAVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~---~~~---l~el~~~aDiv~~~~p~t~~t~~  146 (223)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++++.+     ++..   ..+   .+++....|+|+-++.....   
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~---  270 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN---  270 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHH---
Confidence            488999999999999999999999999999887765432     2211   111   22333568999988863211   


Q ss_pred             ccCHHHHhcCCCCcEEEEcCC
Q 035615          147 IINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       147 li~~~~l~~mk~ga~lIN~ar  167 (223)
                       + ...++.++++..++.++.
T Consensus       271 -~-~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          271 -L-DDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             -H-HHHHTTEEEEEEEEECCC
T ss_pred             -H-HHHHHHhccCCEEEEecc
Confidence             1 345666777777777664

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.62  E-value=0.00085  Score=56.52  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=36.6

Q ss_pred             CCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           72 PLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        72 ~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      +...+++|++|.|||.|.+|...++.|...|++|.++++..
T Consensus         6 pl~~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A            6 QLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             EEEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             eEEEEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            34567899999999999999999999999999999988654

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=96.61  E-value=0.00068  Score=58.69  Aligned_cols=62  Identities=16%  Similarity=0.228  Sum_probs=42.5

Q ss_pred             CEEEEEecChHHHHHHHHHHh-CCCEEEE-EcCCCCCCC-----C-------------------cccccChhhhhcCCcE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQA-FGFIISY-NSRRKRPSV-----L-------------------FPYCANVYDLAVNSDV  133 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~~-~~~~~~~~~-----~-------------------~~~~~~l~el~~~aDi  133 (223)
                      .+|||+|+|.||+.+++.+.. -++++.+ .++.+....     .                   .....+.++++..+|+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv   81 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence            479999999999999999876 4678654 454432110     0                   0000245677789999


Q ss_pred             EEEeccCC
Q 035615          134 LVVCCALT  141 (223)
Q Consensus       134 v~~~~p~t  141 (223)
                      |+.|+|..
T Consensus        82 V~~atp~~   89 (337)
T 1cf2_P           82 VIDCTPEG   89 (337)
T ss_dssp             EEECCSTT
T ss_pred             EEECCCch
Confidence            99999855

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=96.60  E-value=0.019  Score=51.60  Aligned_cols=106  Identities=8%  Similarity=0.020  Sum_probs=67.9

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEE-EcC-------CCC-----------------CCCCc------cccc
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISY-NSR-------RKR-----------------PSVLF------PYCA  122 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~-~~~-------~~~-----------------~~~~~------~~~~  122 (223)
                      +.+++|+||.|-|+|++|+..|+.|...|.+|+. .|.       ..-                 ...++      ..+.
T Consensus       247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v  326 (470)
T 2bma_A          247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYF  326 (470)
T ss_dssp             TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEEC
T ss_pred             cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEe
Confidence            3468999999999999999999999999999873 332       111                 00000      0011


Q ss_pred             Chhhhh-cCCcEEEEeccCChhhhhccCHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          123 NVYDLA-VNSDVLVVCCALTEQTHHIINKDVMAELG--KGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       123 ~l~el~-~~aDiv~~~~p~t~~t~~li~~~~l~~mk--~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      +.++++ ..||+++-|.     +.+.|+.+..+.+.  .-.+++--+.+.+ ..+| .+.|.++.+.
T Consensus       327 ~~~~~~~~~~DI~iPcA-----~~~~I~~~na~~l~~~~ak~V~EgAN~p~-T~eA-~~~L~~rGIl  386 (470)
T 2bma_A          327 PNEKPWGVPCTLAFPCA-----TQNDVDLDQAKLLQKNGCILVGEGANMPS-TVDA-INLFKSNNII  386 (470)
T ss_dssp             SSCCTTSSCCSEEEECS-----STTCBCSHHHHHHHHTTCCEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             cCcCeeecCccEEEecc-----ccCcCCHHHHHHHHhcCcEEEEeCCCCCC-CHHH-HHHHHHCCcE
Confidence            112333 3788887765     35667776666661  1246777777775 4444 5777777775

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=96.60  E-value=0.0017  Score=56.40  Aligned_cols=64  Identities=11%  Similarity=0.121  Sum_probs=47.7

Q ss_pred             CCCEEEEEecChHHH-HHHHHHHhCCCEEE-EEcCCCCCCC------C-cccccChhhhhcC--CcEEEEeccCC
Q 035615           78 GGMQVGIVRLGNIGS-EVLNRLQAFGFIIS-YNSRRKRPSV------L-FPYCANVYDLAVN--SDVLVVCCALT  141 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~-~~a~~l~~~G~~V~-~~~~~~~~~~------~-~~~~~~l~el~~~--aDiv~~~~p~t  141 (223)
                      +-.+|||||+|.+|. ..+..++.-++++. ++|++++...      + ...+.++++++++  .|+|++++|..
T Consensus        25 ~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~   99 (361)
T 3u3x_A           25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSS   99 (361)
T ss_dssp             -CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHH
T ss_pred             cCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence            346899999999995 56777777789864 6788765422      2 3457899999975  89999999843

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=96.56  E-value=0.0022  Score=55.33  Aligned_cols=91  Identities=9%  Similarity=0.155  Sum_probs=60.1

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC--------C--c------ccccChhhhhcCCcEEEEe
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV--------L--F------PYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~--------~--~------~~~~~l~el~~~aDiv~~~  137 (223)
                      ....++|+|||.|.||..+|..+...|.  ++..+|......+        .  +      ....+.+ .++.||+|+++
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~   94 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIIT   94 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEEC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEc
Confidence            3567899999999999999999887777  8999998653211        0  0      1123444 58999999998


Q ss_pred             ccCC--h-hhh-hccC---------HHHHhcCCCCcEEEEcCC
Q 035615          138 CALT--E-QTH-HIIN---------KDVMAELGKGGMIINVGR  167 (223)
Q Consensus       138 ~p~t--~-~t~-~li~---------~~~l~~mk~ga~lIN~ar  167 (223)
                      ....  | .++ .++.         .+.+....|++++++++.
T Consensus        95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN  137 (331)
T 4aj2_A           95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN  137 (331)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            6422  1 122 1221         123344578999999984

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=96.55  E-value=0.0016  Score=54.64  Aligned_cols=60  Identities=13%  Similarity=0.160  Sum_probs=43.1

Q ss_pred             CCEEEEEec-ChHHHHHHHHHH-hCCCEEE-EEcCCCCCC--C-----------CcccccChhhhhcCCcEEEEec
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQ-AFGFIIS-YNSRRKRPS--V-----------LFPYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~-~~G~~V~-~~~~~~~~~--~-----------~~~~~~~l~el~~~aDiv~~~~  138 (223)
                      .++|+|+|+ |+||+.+++.+. .-|+++. ++++.+...  .           +.....++++++..+|+|+-+.
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft   80 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT   80 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcC
Confidence            368999998 999999999876 4578865 677765321  0           1222467888888999999444

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.53  E-value=0.0014  Score=58.06  Aligned_cols=61  Identities=13%  Similarity=0.111  Sum_probs=45.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCC---CEEEEEcCCCCCCC------------Cc-------ccccChhhhhcC--CcEEE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFG---FIISYNSRRKRPSV------------LF-------PYCANVYDLAVN--SDVLV  135 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G---~~V~~~~~~~~~~~------------~~-------~~~~~l~el~~~--aDiv~  135 (223)
                      ++|+|+|.|.||+.+++.|...|   .+|.+++|+..+..            ..       ....++++++++  +|+|+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            58999999999999999999887   38999988754321            01       112345667776  89999


Q ss_pred             EeccC
Q 035615          136 VCCAL  140 (223)
Q Consensus       136 ~~~p~  140 (223)
                      .++|.
T Consensus        82 n~ag~   86 (405)
T 4ina_A           82 NIALP   86 (405)
T ss_dssp             ECSCG
T ss_pred             ECCCc
Confidence            88873

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=96.51  E-value=0.0011  Score=58.18  Aligned_cols=64  Identities=9%  Similarity=-0.021  Sum_probs=48.6

Q ss_pred             CCCEEEEEecCh---HHHHHHHHHHhCC-CEEE--EEcCCCCCCC------Cc---ccccChhhhhcC-------CcEEE
Q 035615           78 GGMQVGIVRLGN---IGSEVLNRLQAFG-FIIS--YNSRRKRPSV------LF---PYCANVYDLAVN-------SDVLV  135 (223)
Q Consensus        78 ~g~~vgIiG~G~---iG~~~a~~l~~~G-~~V~--~~~~~~~~~~------~~---~~~~~l~el~~~-------aDiv~  135 (223)
                      +-.+|||||+|.   ||+..+..++..+ +++.  ++|+++....      +.   ..+.+++++++.       .|+|+
T Consensus        11 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~   90 (398)
T 3dty_A           11 QPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVS   90 (398)
T ss_dssp             SCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEE
T ss_pred             CcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEE
Confidence            346899999999   9999988887654 6765  4688765322      33   457899999864       89999


Q ss_pred             EeccCC
Q 035615          136 VCCALT  141 (223)
Q Consensus       136 ~~~p~t  141 (223)
                      +++|..
T Consensus        91 i~tp~~   96 (398)
T 3dty_A           91 IATPNG   96 (398)
T ss_dssp             EESCGG
T ss_pred             ECCCcH
Confidence            999854

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=96.50  E-value=0.012  Score=50.19  Aligned_cols=94  Identities=16%  Similarity=0.160  Sum_probs=60.0

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCC--CEEEEEcCCCCCC------C---C--ccc---ccChhhhhcCCcEEEEeccCC-
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFG--FIISYNSRRKRPS------V---L--FPY---CANVYDLAVNSDVLVVCCALT-  141 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G--~~V~~~~~~~~~~------~---~--~~~---~~~l~el~~~aDiv~~~~p~t-  141 (223)
                      ++|+|+|. |.+|..++..|...|  .+|..+|+.+...      .   .  ...   ..++++.++.||+|+++.+.. 
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            48999998 999999999998777  5889998875210      0   1  111   135777899999999997432 


Q ss_pred             -hh-hh-hcc--C----H---HHHhcCCCCcEEEEcCCCcccCHHH
Q 035615          142 -EQ-TH-HII--N----K---DVMAELGKGGMIINVGRGALIDEKE  175 (223)
Q Consensus       142 -~~-t~-~li--~----~---~~l~~mk~ga~lIN~arg~~vd~~a  175 (223)
                       +. ++ .++  |    .   +.+....|++++|+++  ..+|.-.
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~s--NPv~~~~  124 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS--NPVNSTI  124 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CCcchhH
Confidence             11 11 110  1    1   1223335789999974  4566543

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=96.50  E-value=0.006  Score=54.82  Aligned_cols=109  Identities=13%  Similarity=0.079  Sum_probs=68.9

Q ss_pred             CCEEEEEecChH-HHHHHHHHHh----C-CCEEEEEcCCC--CCCC---------------C--cccccChhhhhcCCcE
Q 035615           79 GMQVGIVRLGNI-GSEVLNRLQA----F-GFIISYNSRRK--RPSV---------------L--FPYCANVYDLAVNSDV  133 (223)
Q Consensus        79 g~~vgIiG~G~i-G~~~a~~l~~----~-G~~V~~~~~~~--~~~~---------------~--~~~~~~l~el~~~aDi  133 (223)
                      .++|+|||.|.. |.+++..|..    + +.+|..||+.+  +..+               .  .....++.+.++.||+
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~   86 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF   86 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence            468999999999 8887666554    3 55799999977  3211               1  1123577788999999


Q ss_pred             EEEeccCChh---hh--------hc--------------------cC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 035615          134 LVVCCALTEQ---TH--------HI--------------------IN--KDVMAELGKGGMIINVGRGALIDEKEMLQFL  180 (223)
Q Consensus       134 v~~~~p~t~~---t~--------~l--------------------i~--~~~l~~mk~ga~lIN~arg~~vd~~al~~aL  180 (223)
                      |++++|....   ++        ++                    +.  .+.+....|++++||++.---+-..++.+..
T Consensus        87 VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~~k~~  166 (450)
T 1s6y_A           87 VTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYT  166 (450)
T ss_dssp             EEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHC
T ss_pred             EEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhC
Confidence            9999985321   11        11                    10  1234445689999999876645455555544


Q ss_pred             HcCCceE
Q 035615          181 VQGDING  187 (223)
Q Consensus       181 ~~~~i~~  187 (223)
                      ...++.|
T Consensus       167 p~~rViG  173 (450)
T 1s6y_A          167 KQEKVVG  173 (450)
T ss_dssp             CCCCEEE
T ss_pred             CCCCEEE
Confidence            2334544

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.50  E-value=0.0021  Score=55.47  Aligned_cols=92  Identities=12%  Similarity=0.103  Sum_probs=58.5

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCC--------CC--------cccccChhhhhcCCcEEEEeccC
Q 035615           78 GGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPS--------VL--------FPYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~--------~~--------~~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      .+++|.|.| .|.||+.+++.|...|++|.+.+|++...        .+        .....++.++++.+|+|+.+...
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            367899999 59999999999998999999988876532        01        11122356678899999876643


Q ss_pred             ChhhhhccCHHHHhcCCC-C--cEEEEcCCCc
Q 035615          141 TEQTHHIINKDVMAELGK-G--GMIINVGRGA  169 (223)
Q Consensus       141 t~~t~~li~~~~l~~mk~-g--a~lIN~arg~  169 (223)
                      ............++.++. +  ..||++|...
T Consensus        84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            211111112333333322 3  4788887754

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.50  E-value=0.0019  Score=58.15  Aligned_cols=41  Identities=20%  Similarity=0.152  Sum_probs=36.8

Q ss_pred             CCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           72 PLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        72 ~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      +...+++|++|.|||.|.+|...++.|...|++|.++++..
T Consensus         5 P~~~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A            5 PIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             EEEECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             eeEEECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            34567899999999999999999999999999999998754

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.49  E-value=0.0074  Score=50.17  Aligned_cols=34  Identities=18%  Similarity=0.105  Sum_probs=30.6

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      +++|.|.|. |.||+.+++.|...|++|.+.+|+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            578999995 9999999999998899999988875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.49  E-value=0.007  Score=52.45  Aligned_cols=85  Identities=15%  Similarity=0.164  Sum_probs=60.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----Cccc---c----cChhhhhc-----CCcEEEEecc
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----LFPY---C----ANVYDLAV-----NSDVLVVCCA  139 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~---~----~~l~el~~-----~aDiv~~~~p  139 (223)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++++.+     ++..   .    .++.+.+.     ..|+|+-++.
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  271 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  271 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            48899999999999999999999999 7999987765432     2211   1    12333322     5899998886


Q ss_pred             CChhhhhccCHHHHhcCCCC-cEEEEcCC
Q 035615          140 LTEQTHHIINKDVMAELGKG-GMIINVGR  167 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~mk~g-a~lIN~ar  167 (223)
                      ..+ +   + ...++.++++ ..+|.++-
T Consensus       272 ~~~-~---~-~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          272 NVG-V---M-RNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             CHH-H---H-HHHHHTBCTTTCEEEECSC
T ss_pred             CHH-H---H-HHHHHHhhcCCcEEEEEcC
Confidence            322 1   1 4567788998 88888874

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.48  E-value=0.0077  Score=50.45  Aligned_cols=40  Identities=25%  Similarity=0.131  Sum_probs=34.9

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      ..+++||++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus        42 ~~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~   82 (291)
T 3ijr_A           42 SEKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE   82 (291)
T ss_dssp             CSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            34689999999995 89999999999999999998887653

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=96.47  E-value=0.0012  Score=57.99  Aligned_cols=62  Identities=18%  Similarity=0.141  Sum_probs=47.4

Q ss_pred             CCEEEEEecChHHHHHHHHHHhC--CCEEE-EEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAF--GFIIS-YNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~--G~~V~-~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      -.+|||||.| +|+.-++.++..  ++++. +++++.+...      +...+.++++++.+.|++++++|..
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~   77 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRST   77 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCc
Confidence            4689999999 799878777665  67865 6788765432      4445789999999999999999844

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.46  E-value=0.0019  Score=55.38  Aligned_cols=85  Identities=15%  Similarity=0.160  Sum_probs=58.6

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc---c--cChhhh----hcCCcEEEEeccCChh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY---C--ANVYDL----AVNSDVLVVCCALTEQ  143 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~---~--~~l~el----~~~aDiv~~~~p~t~~  143 (223)
                      .|++|.|+|.|.+|..+++.++.+|++|++.++++++.+     ++..   .  .++.+.    ....|+|+.++...+.
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~  243 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA  243 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHH
Confidence            488999999999999999999999999999987754321     2111   1  122222    2468999988763222


Q ss_pred             hhhccCHHHHhcCCCCcEEEEcCC
Q 035615          144 THHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      .     +..++.|+++..++.++.
T Consensus       244 ~-----~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          244 F-----QSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             H-----HHHHHHEEEEEEEEECCC
T ss_pred             H-----HHHHHHhhcCCEEEEecc
Confidence            1     445667788888887764

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=96.45  E-value=0.0071  Score=55.45  Aligned_cols=78  Identities=13%  Similarity=0.027  Sum_probs=56.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcc--------cccChhhh-hcCCcEEEEeccCChhhhhccCH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFP--------YCANVYDL-AVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~--------~~~~l~el-~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      +++.|+|+|++|+.+|+.|...|.+|.+.|.+++......        ....|+++ ++++|.++++++..+  ..++-.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~--~ni~~~  426 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDDS--TNIFLT  426 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCHH--HHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCch--HHHHHH
Confidence            7899999999999999999999999999998877644221        12223333 689999999987543  333334


Q ss_pred             HHHhcCCCC
Q 035615          151 DVMAELGKG  159 (223)
Q Consensus       151 ~~l~~mk~g  159 (223)
                      ...+.+.+.
T Consensus       427 ~~ak~l~~~  435 (565)
T 4gx0_A          427 LACRHLHSH  435 (565)
T ss_dssp             HHHHHHCSS
T ss_pred             HHHHHHCCC
Confidence            555566665

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=96.45  E-value=0.016  Score=52.44  Aligned_cols=101  Identities=14%  Similarity=0.191  Sum_probs=70.4

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCC------CCC---------------C---cccccChhhhh-cC
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKR------PSV---------------L---FPYCANVYDLA-VN  130 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~------~~~---------------~---~~~~~~l~el~-~~  130 (223)
                      +|.|+||.|-|+|++|+..|+.|...|.+|+.++.+..      ...               +   .....  ++++ ..
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~--~~il~~~  318 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYE--GSILEVD  318 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEEC--SCGGGSC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeec--ccccccc
Confidence            58999999999999999999999999999876432211      000               0   01111  1333 47


Q ss_pred             CcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      ||+++-|.     +.+.|+.+....++ -.+++-.+.+.+ ..+| .+.|.++.|.
T Consensus       319 ~DIliPcA-----~~n~I~~~na~~l~-akiV~EgAN~p~-T~eA-~~iL~~rGIl  366 (501)
T 3mw9_A          319 CDILIPAA-----SEKQLTKSNAPRVK-AKIIAEGANGPT-TPEA-DKIFLERNIM  366 (501)
T ss_dssp             CSEEEECS-----SSCCBCTTTGGGCC-CSEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             ceEEeecc-----ccCccCHhHHHHcC-ceEEEeCCCCcC-CHHH-HHHHHHCCCE
Confidence            99887765     46778888888886 467888889984 5544 4677777765

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.45  E-value=0.0094  Score=49.55  Aligned_cols=61  Identities=18%  Similarity=0.156  Sum_probs=44.4

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCC--------------CCc-------ccccChhhhhcCCcEEEE
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPS--------------VLF-------PYCANVYDLAVNSDVLVV  136 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~--------------~~~-------~~~~~l~el~~~aDiv~~  136 (223)
                      .++|.|.|. |.+|+.+++.|...|++|.+.+|+....              .+.       ....++.++++.+|+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            478999995 9999999999999999999998875321              111       112345566777888877


Q ss_pred             ecc
Q 035615          137 CCA  139 (223)
Q Consensus       137 ~~p  139 (223)
                      +.+
T Consensus        84 ~a~   86 (308)
T 1qyc_A           84 TVG   86 (308)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            664

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=96.44  E-value=0.0011  Score=57.24  Aligned_cols=63  Identities=10%  Similarity=0.107  Sum_probs=45.5

Q ss_pred             CCEEEEEecChHHHHHHHHHHhC--------CCEE-EEEcCCCCCCC------Cc-ccccChhhhhc--CCcEEEEeccC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAF--------GFII-SYNSRRKRPSV------LF-PYCANVYDLAV--NSDVLVVCCAL  140 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~--------G~~V-~~~~~~~~~~~------~~-~~~~~l~el~~--~aDiv~~~~p~  140 (223)
                      ..+|||||+|.||+.-++.++..        +++| .++|++++...      +. ..+.+++++++  +.|+|++++|.
T Consensus         6 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~   85 (390)
T 4h3v_A            6 NLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPG   85 (390)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCG
T ss_pred             cCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCCh
Confidence            35899999999999887776543        2365 46787765432      22 34688999986  47999999985


Q ss_pred             C
Q 035615          141 T  141 (223)
Q Consensus       141 t  141 (223)
                      .
T Consensus        86 ~   86 (390)
T 4h3v_A           86 D   86 (390)
T ss_dssp             G
T ss_pred             H
Confidence            4

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.42  E-value=0.0088  Score=51.81  Aligned_cols=85  Identities=19%  Similarity=0.230  Sum_probs=59.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----Cccc---c----cChhhhhc-----CCcEEEEecc
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----LFPY---C----ANVYDLAV-----NSDVLVVCCA  139 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~---~----~~l~el~~-----~aDiv~~~~p  139 (223)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.+     ++..   +    .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g  270 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  270 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            48899999999999999999999999 7999987765432     2211   1    12333222     5899998886


Q ss_pred             CChhhhhccCHHHHhcCCCC-cEEEEcCC
Q 035615          140 LTEQTHHIINKDVMAELGKG-GMIINVGR  167 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~mk~g-a~lIN~ar  167 (223)
                      .. ++   + ...++.++++ ..++.++-
T Consensus       271 ~~-~~---~-~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          271 RI-ET---M-MNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             CH-HH---H-HHHHHTBCTTTCEEEECCC
T ss_pred             CH-HH---H-HHHHHHHhcCCCEEEEEcc
Confidence            32 21   1 4567788888 88888763

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=96.41  E-value=0.011  Score=49.13  Aligned_cols=39  Identities=18%  Similarity=0.174  Sum_probs=33.8

Q ss_pred             ccccCCCEEEEEec-Ch--HHHHHHHHHHhCCCEEEEEcCCC
Q 035615           74 GFKLGGMQVGIVRL-GN--IGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~--iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      ...++||++.|.|. |.  ||+++|+.|...|++|++.+|+.
T Consensus        21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            35689999999995 45  99999999999999999988875

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.39  E-value=0.0039  Score=53.52  Aligned_cols=85  Identities=13%  Similarity=0.112  Sum_probs=58.8

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc------ccChhhhhc-----CCcEEEEeccC
Q 035615           78 GGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY------CANVYDLAV-----NSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~------~~~l~el~~-----~aDiv~~~~p~  140 (223)
                      .|++|.|+|. |.||+.+++.++..|++|++.+++++..+     +...      ..++.+.+.     ..|+|+.++..
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~  248 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS  248 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence            4889999999 89999999999999999999887765321     1111      123333332     47999888753


Q ss_pred             ChhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          141 TEQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       141 t~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      .+..     +..++.|+++..+|+++.
T Consensus       249 ~~~~-----~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          249 EAAI-----EASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             HHHH-----HHHTTSEEEEEEEEECCC
T ss_pred             HHHH-----HHHHHHHhcCCEEEEEeC
Confidence            2221     445667788888888764

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.39  E-value=0.0051  Score=50.86  Aligned_cols=61  Identities=13%  Similarity=0.107  Sum_probs=46.4

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhC-CCEEEEEcCCCCCCC-----C-------cccccChhhhhcCCcEEEEeccC
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAF-GFIISYNSRRKRPSV-----L-------FPYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~-----~-------~~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      ++|.|.| .|.||+.+++.|... |++|.+.+|++....     +       .....++.++++.+|+|+.+.+.
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   75 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI   75 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            4689999 599999999999987 999999988765432     1       11124466788999999887754

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.37  E-value=0.0096  Score=51.51  Aligned_cols=85  Identities=18%  Similarity=0.207  Sum_probs=60.2

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----Cccc---c----cChhhhhc-----CCcEEEEecc
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----LFPY---C----ANVYDLAV-----NSDVLVVCCA  139 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~---~----~~l~el~~-----~aDiv~~~~p  139 (223)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.+     ++..   .    .++.+.+.     ..|+|+-++.
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g  269 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  269 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence            48899999999999999999999999 7999987765432     2211   1    12333222     5899998886


Q ss_pred             CChhhhhccCHHHHhcCCCC-cEEEEcCC
Q 035615          140 LTEQTHHIINKDVMAELGKG-GMIINVGR  167 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~mk~g-a~lIN~ar  167 (223)
                      ..+ +   + ...++.++++ ..++.++-
T Consensus       270 ~~~-~---~-~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          270 NVK-V---M-RAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             CHH-H---H-HHHHHTBCTTTCEEEECSC
T ss_pred             cHH-H---H-HHHHHhhccCCcEEEEEec
Confidence            322 1   1 4567788998 88888763

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.37  E-value=0.012  Score=51.05  Aligned_cols=85  Identities=20%  Similarity=0.142  Sum_probs=59.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----Cccc---c----cChhhhhc-----CCcEEEEecc
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----LFPY---C----ANVYDLAV-----NSDVLVVCCA  139 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~---~----~~l~el~~-----~aDiv~~~~p  139 (223)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.+     ++..   .    .++.+.+.     ..|+|+-++.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G  274 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  274 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence            48899999999999999999999999 7999987765432     2211   1    12333222     5899998875


Q ss_pred             CChhhhhccCHHHHhcCCCC-cEEEEcCC
Q 035615          140 LTEQTHHIINKDVMAELGKG-GMIINVGR  167 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~mk~g-a~lIN~ar  167 (223)
                      .. .+   + ...++.++++ ..++.++-
T Consensus       275 ~~-~~---~-~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          275 TA-QT---L-KAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             CH-HH---H-HHHHHTBCTTTCEEEECCC
T ss_pred             CH-HH---H-HHHHHHhhcCCCEEEEECC
Confidence            32 21   1 4567788888 88887763

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=96.36  E-value=0.0066  Score=52.11  Aligned_cols=62  Identities=15%  Similarity=0.185  Sum_probs=45.7

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHhCC--CEEEEEcCCCCCC------C-C----ccc---ccChhhhhcCCcEEEEeccC
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQAFG--FIISYNSRRKRPS------V-L----FPY---CANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~------~-~----~~~---~~~l~el~~~aDiv~~~~p~  140 (223)
                      .++|+|+| .|.+|..++..|...|  .+|..+|+.+...      . .    ...   ..++.+.++.+|+|+++.+.
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~   86 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGV   86 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCc
Confidence            46899999 8999999999998877  6788888655310      0 0    011   12566789999999999853

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.36  E-value=0.011  Score=51.31  Aligned_cols=85  Identities=16%  Similarity=0.124  Sum_probs=59.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----Cccc---c----cChhhhhc-----CCcEEEEecc
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----LFPY---C----ANVYDLAV-----NSDVLVVCCA  139 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~---~----~~l~el~~-----~aDiv~~~~p  139 (223)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++++.+     ++..   .    .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  270 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  270 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence            48899999999999999999999999 7999987765432     2211   1    12333222     4799998886


Q ss_pred             CChhhhhccCHHHHhcCCCC-cEEEEcCC
Q 035615          140 LTEQTHHIINKDVMAELGKG-GMIINVGR  167 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~mk~g-a~lIN~ar  167 (223)
                      .. .+   + ...++.++++ ..++.++-
T Consensus       271 ~~-~~---~-~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          271 RL-DT---M-VTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             CH-HH---H-HHHHHHBCTTTCEEEECSC
T ss_pred             CH-HH---H-HHHHHHhhcCCcEEEEecc
Confidence            32 21   1 4567778888 88888763

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=96.36  E-value=0.0078  Score=54.12  Aligned_cols=106  Identities=12%  Similarity=0.194  Sum_probs=74.0

Q ss_pred             cCCCEEEEEecC----hHHHHHHHHHHhCC-CEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHH
Q 035615           77 LGGMQVGIVRLG----NIGSEVLNRLQAFG-FIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        77 l~g~~vgIiG~G----~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~  151 (223)
                      ++-++|.|||.+    ++|+.+.+.++..| ..|+.+++......+...+.+++|+....|++++++|. +....++. +
T Consensus         6 ~~p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i~G~~~y~sl~~lp~~~Dlavi~vp~-~~~~~~v~-e   83 (457)
T 2csu_A            6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVPK-RFVKDTLI-Q   83 (457)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSCH-HHHHHHHH-H
T ss_pred             cCCCeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeECCEeccCCHHHcCCCCCEEEEecCH-HHHHHHHH-H
Confidence            567899999998    89999999999884 77888888755445666678899988889999999983 34444443 3


Q ss_pred             HHhcCCCCcEEEEcCCC--cccC-----HHHHHHHHHcCCce
Q 035615          152 VMAELGKGGMIINVGRG--ALID-----EKEMLQFLVQGDIN  186 (223)
Q Consensus       152 ~l~~mk~ga~lIN~arg--~~vd-----~~al~~aL~~~~i~  186 (223)
                      ..+. .... +|.++-|  +.-+     ++.+.+..++..+.
T Consensus        84 ~~~~-Gi~~-vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~  123 (457)
T 2csu_A           84 CGEK-GVKG-VVIITAGFGETGEEGKREEKELVEIAHKYGMR  123 (457)
T ss_dssp             HHHH-TCCE-EEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHHc-CCCE-EEEecCCCCccccccHHHHHHHHHHHHHcCCE
Confidence            3322 2223 4444433  2223     67788888877665

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.36  E-value=0.0075  Score=50.43  Aligned_cols=61  Identities=13%  Similarity=0.174  Sum_probs=46.8

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------CcccccChhhhhcCCcEEEEeccC
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------LFPYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      +++|.|.| .|.||+.+++.|...|++|++.+|++....         +.. ..++.++++.+|+|+.+...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~   72 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYT-LEDLINQLNDVDAVVHLAAT   72 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCC-HHHHHHHTTTCSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEcccc-HHHHHHhhcCCCEEEEcccc
Confidence            47899999 699999999999999999999988743221         122 34566788899999877643

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=96.34  E-value=0.0064  Score=52.94  Aligned_cols=30  Identities=23%  Similarity=0.247  Sum_probs=25.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhC-CCEEEEEc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF-GFIISYNS  109 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~  109 (223)
                      .+|||+|+|.||+.+.+.|... .++|.+.+
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivain   48 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAIN   48 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEec
Confidence            4899999999999999998765 67876554

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.33  E-value=0.0047  Score=49.80  Aligned_cols=92  Identities=15%  Similarity=0.153  Sum_probs=59.1

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCC--------cccccChhhhh---------cCCcEEEEecc
Q 035615           78 GGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVL--------FPYCANVYDLA---------VNSDVLVVCCA  139 (223)
Q Consensus        78 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~--------~~~~~~l~el~---------~~aDiv~~~~p  139 (223)
                      ++|++.|.|. |.||+.+++.|...|++|+..+|+......        .....++++++         ...|+|+.+.-
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag   81 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAG   81 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccccccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEEEECCc
Confidence            5789999984 899999999999999999999887654321        11112223333         36899988764


Q ss_pred             CC-------hhh----hhcc----------CHHHHhcCCCCcEEEEcCCCc
Q 035615          140 LT-------EQT----HHII----------NKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       140 ~t-------~~t----~~li----------~~~~l~~mk~ga~lIN~arg~  169 (223)
                      ..       +.+    +.++          .+..+..|+++..|||++...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  132 (236)
T 1ooe_A           82 GWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAA  132 (236)
T ss_dssp             CCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             ccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchh
Confidence            21       111    1111          234556676667899988643

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=96.32  E-value=0.0021  Score=56.99  Aligned_cols=63  Identities=11%  Similarity=0.138  Sum_probs=47.2

Q ss_pred             CCEEEEEecCh---HHHHHHHHHHhCC-CEEE--EEcCCCCCCC------Cc---ccccChhhhhcC-------CcEEEE
Q 035615           79 GMQVGIVRLGN---IGSEVLNRLQAFG-FIIS--YNSRRKRPSV------LF---PYCANVYDLAVN-------SDVLVV  136 (223)
Q Consensus        79 g~~vgIiG~G~---iG~~~a~~l~~~G-~~V~--~~~~~~~~~~------~~---~~~~~l~el~~~-------aDiv~~  136 (223)
                      -.+|||||+|.   ||+..+..++..+ ++++  ++|+++....      +.   ..+.+++++++.       .|+|++
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I  116 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAI  116 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEE
T ss_pred             cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEE
Confidence            45899999999   9999888887665 6765  5687765422      23   356889999875       899999


Q ss_pred             eccCC
Q 035615          137 CCALT  141 (223)
Q Consensus       137 ~~p~t  141 (223)
                      ++|..
T Consensus       117 ~tp~~  121 (417)
T 3v5n_A          117 VTPNH  121 (417)
T ss_dssp             CSCTT
T ss_pred             CCCcH
Confidence            99955

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=96.32  E-value=0.0044  Score=50.63  Aligned_cols=94  Identities=14%  Similarity=0.147  Sum_probs=59.3

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc------ccccChhhhhc-------CCcEEEEeccCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLF------PYCANVYDLAV-------NSDVLVVCCALT  141 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~------~~~~~l~el~~-------~aDiv~~~~p~t  141 (223)
                      +..+|++.|.|. |.||+.+|+.|...|++|++.+|+.......      ....+++++++       .-|+|+.+....
T Consensus        19 ~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~Ag~~   98 (251)
T 3orf_A           19 SHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGW   98 (251)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSSEEEECSCSSHHHHHHHHHHHHTTTCCEEEEEECCCCC
T ss_pred             cccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccceEEEeCCHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence            345899999995 8899999999999999999999887654321      11122333332       459988876421


Q ss_pred             -------hhh----hhc----------cCHHHHhcCCCCcEEEEcCCCc
Q 035615          142 -------EQT----HHI----------INKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       142 -------~~t----~~l----------i~~~~l~~mk~ga~lIN~arg~  169 (223)
                             +.+    ..+          +.+..+..|+++..|||++...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  147 (251)
T 3orf_A           99 SGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASA  147 (251)
T ss_dssp             CCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             CCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechh
Confidence                   111    011          1234556677777899988643

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.32  E-value=0.0069  Score=52.05  Aligned_cols=86  Identities=20%  Similarity=0.226  Sum_probs=59.8

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc---c---cC-hhhh---h-----cCCcEEEEe
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY---C---AN-VYDL---A-----VNSDVLVVC  137 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~---~---~~-l~el---~-----~~aDiv~~~  137 (223)
                      .|++|.|+|.|.+|...++.++.+|++|++.++++++.+     ++..   +   .+ .+++   .     ...|+|+.+
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~  247 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  247 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence            488999999999999999999999999988887654321     2211   1   11 1222   2     258999988


Q ss_pred             ccCChhhhhccCHHHHhcCCCCcEEEEcCCC
Q 035615          138 CALTEQTHHIINKDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       138 ~p~t~~t~~li~~~~l~~mk~ga~lIN~arg  168 (223)
                      +... .+   + ...++.++++..++.++..
T Consensus       248 ~g~~-~~---~-~~~~~~l~~~G~iv~~G~~  273 (352)
T 1e3j_A          248 SGNE-KC---I-TIGINITRTGGTLMLVGMG  273 (352)
T ss_dssp             SCCH-HH---H-HHHHHHSCTTCEEEECSCC
T ss_pred             CCCH-HH---H-HHHHHHHhcCCEEEEEecC
Confidence            8632 11   1 4567788999999988743

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=96.31  E-value=0.0027  Score=54.80  Aligned_cols=85  Identities=19%  Similarity=0.256  Sum_probs=59.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC------CCccc---ccC---hhhhhcCCcEEEEeccCChhhh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS------VLFPY---CAN---VYDLAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~---~~~---l~el~~~aDiv~~~~p~t~~t~  145 (223)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++++.      .++..   ..+   +.++....|+|+-++.....  
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~--  257 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHA--  257 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHH--
Confidence            58999999999999999999999999999888776432      12211   122   22333468999988863211  


Q ss_pred             hccCHHHHhcCCCCcEEEEcCC
Q 035615          146 HIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~ar  167 (223)
                         -...++.++++..++.++-
T Consensus       258 ---~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          258 ---LEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             ---SHHHHTTEEEEEEEEECSC
T ss_pred             ---HHHHHHHhccCCEEEEeCC
Confidence               2445677788888887763

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.30  E-value=0.0033  Score=52.86  Aligned_cols=83  Identities=14%  Similarity=0.193  Sum_probs=58.3

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc---c---cChhhhhcCCcEEEEeccCChhhh
Q 035615           78 GGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY---C---ANVYDLAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        78 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~---~---~~l~el~~~aDiv~~~~p~t~~t~  145 (223)
                      .|++|.|+|. |.+|..+++.++.+|++|++.++++++.+     ++..   .   .++.+.+...|+++. +.. +.  
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~~--  200 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-KE--  200 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-TT--
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-HH--
Confidence            4889999998 99999999999999999999988765432     2221   1   122233367899988 753 21  


Q ss_pred             hccCHHHHhcCCCCcEEEEcCC
Q 035615          146 HIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~ar  167 (223)
                         -...++.|+++..++.++.
T Consensus       201 ---~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          201 ---VEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             ---HHHHHTTEEEEEEEEEC--
T ss_pred             ---HHHHHHhhccCCEEEEEeC
Confidence               2456778888888888763

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.30  E-value=0.004  Score=51.29  Aligned_cols=62  Identities=13%  Similarity=0.118  Sum_probs=47.9

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCCC---------cccccChhhhhcCCcEEEEecc
Q 035615           78 GGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSVL---------FPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        78 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~---------~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      .+|+|.|.| .|.||+.+++.|...|++|+..+|+......         .....++.++++..|+|+.+..
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag   73 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAGCDGIVHLGG   73 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHcCCCEEEECCC
Confidence            468899999 6999999999999999999999988754321         1122345678889999987753

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=96.30  E-value=0.0055  Score=53.02  Aligned_cols=84  Identities=14%  Similarity=0.197  Sum_probs=52.8

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhC-CCEEEEE-cCCC--CCCC----------Cc--cccc---ChhhhhcCCcEEEEecc
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAF-GFIISYN-SRRK--RPSV----------LF--PYCA---NVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~-~~~~--~~~~----------~~--~~~~---~l~el~~~aDiv~~~~p  139 (223)
                      .+|+|+| .|.+|+.+.+.|... .+++..+ +++.  ....          +.  ..+.   +.+++++++|+|++|+|
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p   84 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA   84 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence            5899999 699999999999873 5576544 4431  1100          11  0111   34555589999999998


Q ss_pred             CChhhhhccCHHHHhcCCCCcEEEEcCCC
Q 035615          140 LTEQTHHIINKDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~mk~ga~lIN~arg  168 (223)
                      ... +.... ++   .++.|+.+|+.|.-
T Consensus        85 ~~~-s~~~~-~~---~~~~g~~vIDlSa~  108 (337)
T 3dr3_A           85 HEV-SHDLA-PQ---FLEAGCVVFDLSGA  108 (337)
T ss_dssp             HHH-HHHHH-HH---HHHTTCEEEECSST
T ss_pred             hHH-HHHHH-HH---HHHCCCEEEEcCCc
Confidence            432 22221 12   24678999998854

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.29  E-value=0.0047  Score=52.39  Aligned_cols=38  Identities=26%  Similarity=0.316  Sum_probs=33.2

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRK  112 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~  112 (223)
                      ..|++++|.|||.|.+|..+++.|...|. ++..+|...
T Consensus        32 ~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            46899999999999999999999999897 677777654

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.29  E-value=0.0025  Score=54.78  Aligned_cols=85  Identities=15%  Similarity=0.107  Sum_probs=58.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----Cccc-----ccChhhhh------cCCcEEEEeccC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----LFPY-----CANVYDLA------VNSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~-----~~~l~el~------~~aDiv~~~~p~  140 (223)
                      .|++|.|+|.|.+|..+++.++.+|+ +|++.++++++.+     ++..     ..++.+.+      ...|+|+.+++.
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~  246 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA  246 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            68999999999999999999999999 8999988754321     2111     11222222      157999988863


Q ss_pred             ChhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          141 TEQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       141 t~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      .+..     ...++.++++..++.++.
T Consensus       247 ~~~~-----~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          247 PKAL-----EQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             HHHH-----HHHHHHEEEEEEEEECCC
T ss_pred             HHHH-----HHHHHHHhcCCEEEEEcc
Confidence            2221     345566777777777764

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=96.29  E-value=0.016  Score=49.11  Aligned_cols=87  Identities=14%  Similarity=0.100  Sum_probs=63.7

Q ss_pred             ccCCCEEEEEec---ChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChh----
Q 035615           76 KLGGMQVGIVRL---GNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQ----  143 (223)
Q Consensus        76 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~----  143 (223)
                      .+.|++|+++|=   +++.++.+..+..+|++|.+..|..-...     +.....+++|.++.+|+|.. +-..-+    
T Consensus       143 ~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~~q~er~~~  221 (291)
T 3d6n_B          143 EVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LRLQKERQKE  221 (291)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CCCCTHHHHT
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eCcccCcccc
Confidence            378999999995   89999999999999999998876542221     23346789999999999988 543211    


Q ss_pred             ----------hhhccCHHHHhcCCCCcEEEEcC
Q 035615          144 ----------THHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       144 ----------t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                                ...-++++.++.+|   +|.-+.
T Consensus       222 ~~~~~~~~~~~~y~v~~~~l~~a~---i~mH~l  251 (291)
T 3d6n_B          222 NYIPSESSYFKQFGLTKERFEKVK---LYMHPG  251 (291)
T ss_dssp             TSSSCHHHHHHHHSBCHHHHTTCC---CEECSS
T ss_pred             ccchhHHHHHhhcCcCHHHHHhcc---cccCCC
Confidence                      12345777777665   566554

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.28  E-value=0.0027  Score=55.09  Aligned_cols=63  Identities=13%  Similarity=0.155  Sum_probs=47.7

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHhCCC--EEEEEcCCCCCCC--------------CcccccChhhhhcCCcEEEEecc
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQAFGF--IISYNSRRKRPSV--------------LFPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~--------------~~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      +.+++|+|||. |.+|+.+|..+..+|.  +|..+|......+              ......+..+.++.||+|+++..
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            45789999998 9999999998888775  7999998643211              11123567788999999999863

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=96.28  E-value=0.0034  Score=56.31  Aligned_cols=103  Identities=11%  Similarity=0.216  Sum_probs=63.5

Q ss_pred             CEEEEEecChHHHHHHHHHHhC-CCEEE-EEcCCCCCCC-------C----------------------cccccChhhhh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF-GFIIS-YNSRRKRPSV-------L----------------------FPYCANVYDLA  128 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~-------~----------------------~~~~~~l~el~  128 (223)
                      .+|||||+|.||+.+++.+... ++++. ++|++++...       +                      ...+.+.++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL  103 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL  103 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence            5899999999999999888754 67754 6777764321       1                      12357889998


Q ss_pred             c--CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCc-ccCHHHHHHHHHcCCce
Q 035615          129 V--NSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGA-LIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       129 ~--~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~-~vd~~al~~aL~~~~i~  186 (223)
                      +  +.|+|+.++|.. ....   +-.+..|+.|.-++...-.- ..+-+.|.++-++..+.
T Consensus       104 ~d~dIDaVviaTp~p-~~H~---e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvv  160 (446)
T 3upl_A          104 SNPLIDVIIDATGIP-EVGA---ETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVI  160 (446)
T ss_dssp             TCTTCCEEEECSCCH-HHHH---HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cCCCCCEEEEcCCCh-HHHH---HHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCe
Confidence            7  589999999843 2211   12333455565555322111 12335666666665554

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=96.28  E-value=0.0027  Score=57.01  Aligned_cols=104  Identities=17%  Similarity=0.284  Sum_probs=65.5

Q ss_pred             CCEEEEEecChHHHHHHHHHHh----------CCCEEE-EEcCCCCCCC----CcccccChhhhhc--CCcEEEEeccCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQA----------FGFIIS-YNSRRKRPSV----LFPYCANVYDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~----------~G~~V~-~~~~~~~~~~----~~~~~~~l~el~~--~aDiv~~~~p~t  141 (223)
                      ..+|||+|+|.||+.+++.+..          .+++|. +++++.....    ....+.++++++.  +.|+|+.++|..
T Consensus        10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~tp~~   89 (444)
T 3mtj_A           10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELIGGL   89 (444)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECCCSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcCCCc
Confidence            4589999999999999987653          456654 5676653221    2345678999986  579999999853


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCce
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVGRGALI-DEKEMLQFLVQGDIN  186 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~arg~~v-d~~al~~aL~~~~i~  186 (223)
                      .....+    ..+.|+.|.-++..--+... +-+.|.++.++.+..
T Consensus        90 ~~h~~~----~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~  131 (444)
T 3mtj_A           90 EPAREL----VMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVM  131 (444)
T ss_dssp             TTHHHH----HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hHHHHH----HHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCe
Confidence            222222    23445566666654343222 235777777766554

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.26  E-value=0.0081  Score=51.38  Aligned_cols=107  Identities=14%  Similarity=0.106  Sum_probs=69.3

Q ss_pred             CCEEEEEecChHHHH-HHHHHHhCCCEEEEEcCCCCCC-------CCcccc--cChhhhh-cCCcEEEEec--c-CChhh
Q 035615           79 GMQVGIVRLGNIGSE-VLNRLQAFGFIISYNSRRKRPS-------VLFPYC--ANVYDLA-VNSDVLVVCC--A-LTEQT  144 (223)
Q Consensus        79 g~~vgIiG~G~iG~~-~a~~l~~~G~~V~~~~~~~~~~-------~~~~~~--~~l~el~-~~aDiv~~~~--p-~t~~t  144 (223)
                      .++|.|||.|.+|.+ +|+.|+..|++|.++|....+.       .+....  .+.+++. ..+|+|+..-  | .+|..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~   83 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVV   83 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHH
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHH
Confidence            578999999999996 9999999999999999865421       122111  2344555 5799998863  2 33332


Q ss_pred             h-------hccCH-HHHhc--CCC-CcEEEEcCCCcccCHHHHHHHHHcCCc
Q 035615          145 H-------HIINK-DVMAE--LGK-GGMIINVGRGALIDEKEMLQFLVQGDI  185 (223)
Q Consensus       145 ~-------~li~~-~~l~~--mk~-ga~lIN~arg~~vd~~al~~aL~~~~i  185 (223)
                      .       .++.+ +++..  ++. ..+-|--+.|+.--..-+...|++...
T Consensus        84 ~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~  135 (326)
T 3eag_A           84 EAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGL  135 (326)
T ss_dssp             HHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence            1       13333 33443  332 245566668888888888888887543

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.26  E-value=0.0042  Score=53.63  Aligned_cols=30  Identities=20%  Similarity=0.197  Sum_probs=24.4

Q ss_pred             CEEEEEecChHHHHHHHHHHhC---CCEEEEEc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF---GFIISYNS  109 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~---G~~V~~~~  109 (223)
                      .+|||+|+|.||+.+.+.|...   .++|.+++
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain   33 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIN   33 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence            4799999999999999998754   57876543

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.24  E-value=0.013  Score=52.76  Aligned_cols=92  Identities=12%  Similarity=0.193  Sum_probs=65.3

Q ss_pred             ccCCCEEEEEecCh----------HHHHHHHHHHhCCCEEEEEcCCCCCCC------------------CcccccChhhh
Q 035615           76 KLGGMQVGIVRLGN----------IGSEVLNRLQAFGFIISYNSRRKRPSV------------------LFPYCANVYDL  127 (223)
Q Consensus        76 ~l~g~~vgIiG~G~----------iG~~~a~~l~~~G~~V~~~~~~~~~~~------------------~~~~~~~l~el  127 (223)
                      .+.|++|+|+|+--          -...+++.|...|++|.+|||.-....                  ......+..+.
T Consensus       326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (467)
T 2q3e_A          326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEA  405 (467)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHH
T ss_pred             ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHH
Confidence            47899999999753          678899999999999999999743211                  01123477888


Q ss_pred             hcCCcEEEEeccCChhhhhccCHH-HHhcCCCCcEEEEcCCCcc
Q 035615          128 AVNSDVLVVCCALTEQTHHIINKD-VMAELGKGGMIINVGRGAL  170 (223)
Q Consensus       128 ~~~aDiv~~~~p~t~~t~~li~~~-~l~~mk~ga~lIN~arg~~  170 (223)
                      ++.+|.|++++... +-+. ++.+ ....|+...+++|. |+-+
T Consensus       406 ~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~~~~~i~D~-r~~~  446 (467)
T 2q3e_A          406 CDGAHAVVICTEWD-MFKE-LDYERIHKKMLKPAFIFDG-RRVL  446 (467)
T ss_dssp             HTTCSEEEECSCCG-GGGG-SCHHHHHHHSCSSCEEEES-SCTT
T ss_pred             HhCCcEEEEecCCh-hhhc-CCHHHHHHhcCCCCEEEeC-CCcC
Confidence            99999999998754 3333 3444 44567766668875 5543

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=96.21  E-value=0.029  Score=48.20  Aligned_cols=97  Identities=6%  Similarity=-0.034  Sum_probs=73.2

Q ss_pred             cCCCEEEE-----EecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEecc--CCh--
Q 035615           77 LGGMQVGI-----VRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCA--LTE--  142 (223)
Q Consensus        77 l~g~~vgI-----iG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p--~t~--  142 (223)
                      +. .+|++     +|=+++.++.+..+..+|++|.+..|..-...     .+....+++|.++.+|+|..-.=  ...  
T Consensus       167 l~-l~ia~a~~~~vGD~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~w~s~g~~~  245 (324)
T 1js1_X          167 PK-VVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDN  245 (324)
T ss_dssp             CE-EEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECCCCCCSTTC
T ss_pred             ee-EEEEEEcccccCCcchHHHHHHHHHHCCCEEEEeCCcccCCChhhccceEEECCHHHHhCCCCEEEecCcccCCCcc
Confidence            66 89999     99999999999999999999998887553322     23446889999999999988432  011  


Q ss_pred             -------hhhhccCHHHHhcCCCCcEEEEcC---CCcccCHHH
Q 035615          143 -------QTHHIINKDVMAELGKGGMIINVG---RGALIDEKE  175 (223)
Q Consensus       143 -------~t~~li~~~~l~~mk~ga~lIN~a---rg~~vd~~a  175 (223)
                             .....++++.++.+| +++|.-+.   ||.=|+.+-
T Consensus       246 ~~~~~~r~~~y~vt~e~l~~a~-~ai~MHcLP~~Rg~EI~~eV  287 (324)
T 1js1_X          246 YGQILSTDRNWTVGDRQMAVTN-NAYFMHCLPVRRNMIVTDDV  287 (324)
T ss_dssp             TTCCCCCCTTSSBCHHHHTTSS-SCEEECCSCCCBTTTBCHHH
T ss_pred             ccchHHHhcCcccCHHHHHhcC-CcEEECCCCCCCCcccCHHH
Confidence                   123567999999999 99999887   455555443

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=96.21  E-value=0.004  Score=49.87  Aligned_cols=91  Identities=19%  Similarity=0.118  Sum_probs=59.6

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhh---cCCcEEEEeccCC-h--------
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLA---VNSDVLVVCCALT-E--------  142 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~---~~aDiv~~~~p~t-~--------  142 (223)
                      .+.+|++.|.|. |.||+.+|+.|...|++|++.+|+...  +.....++++++   ...|+++.+.... +        
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~--D~~~~~~v~~~~~~~g~id~lv~nAg~~~~~~~~~~~~   80 (223)
T 3uce_A            3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGL--DISDEKSVYHYFETIGAFDHLIVTAGSYAPAGKVVDVE   80 (223)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTC--CTTCHHHHHHHHHHHCSEEEEEECCCCCCCCSCTTTSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCccc--CCCCHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCC
Confidence            467999999995 899999999999999999999887641  121122333333   4679988776422 0        


Q ss_pred             -h-hhh----------ccCHHHHhcCCCCcEEEEcCCC
Q 035615          143 -Q-THH----------IINKDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       143 -~-t~~----------li~~~~l~~mk~ga~lIN~arg  168 (223)
                       + -+.          .+.+..+..|+++..+||++..
T Consensus        81 ~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~  118 (223)
T 3uce_A           81 VTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGM  118 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             HHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecch
Confidence             0 000          0123455677777889999864

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.19  E-value=0.013  Score=49.09  Aligned_cols=61  Identities=16%  Similarity=0.159  Sum_probs=43.9

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCC---------CCcc-------cccChhhhhcCCcEEEEecc
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPS---------VLFP-------YCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---------~~~~-------~~~~l~el~~~aDiv~~~~p  139 (223)
                      .++|.|.| .|.+|+.+++.|...|++|.+.+|++...         .+..       ...++.++++.+|+|+.+.+
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~   88 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA   88 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            35899999 59999999999999999999998876411         1111       12345566777887776664

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=96.19  E-value=0.017  Score=47.65  Aligned_cols=49  Identities=20%  Similarity=0.341  Sum_probs=37.3

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhC-CCEEE-EEcCCCCCCCCcccccChhhhhc-CCcEEEEec
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAF-GFIIS-YNSRRKRPSVLFPYCANVYDLAV-NSDVLVVCC  138 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~l~el~~-~aDiv~~~~  138 (223)
                      ++|+|+|. |+||+.+++.+... ++++. ++++.          .++++++. .+|+|+-+.
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~----------~dl~~~~~~~~DvvIDfT   53 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG----------DPLSLLTDGNTEVVIDFT   53 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT----------CCTHHHHHTTCCEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC----------CCHHHHhccCCcEEEEcc
Confidence            47999995 99999999998765 89976 55653          34666664 799888555

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.18  E-value=0.0067  Score=53.26  Aligned_cols=86  Identities=14%  Similarity=0.144  Sum_probs=58.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----Cccc-----ccChhh----hh--cCCcEEEEeccC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----LFPY-----CANVYD----LA--VNSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~-----~~~l~e----l~--~~aDiv~~~~p~  140 (223)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.+     ++..     ..++.+    +.  ...|+|+-++..
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~  292 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGV  292 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCC
Confidence            58999999999999999999999999 8999987764422     2211     112222    22  258999988864


Q ss_pred             ChhhhhccCHHHHhcC----CCCcEEEEcCC
Q 035615          141 TEQTHHIINKDVMAEL----GKGGMIINVGR  167 (223)
Q Consensus       141 t~~t~~li~~~~l~~m----k~ga~lIN~ar  167 (223)
                      ...+.    ...++.+    +++..++.++-
T Consensus       293 ~~~~~----~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          293 PQLVW----PQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             HHHHH----HHHHHHHHHCSCCCCEEEECSC
T ss_pred             cHHHH----HHHHHHHHhccCCCcEEEEeCC
Confidence            32222    2233344    88888888864

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.18  E-value=0.0073  Score=52.04  Aligned_cols=85  Identities=18%  Similarity=0.218  Sum_probs=59.4

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----Cccc---cc-----Ch-hhhh----cCCcEEEEec
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----LFPY---CA-----NV-YDLA----VNSDVLVVCC  138 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~---~~-----~l-~el~----~~aDiv~~~~  138 (223)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.+     ++..   +.     ++ +++.    ...|+|+-++
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~  250 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  250 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence            48899999999999999999999999 8999887654321     2211   11     11 1221    3589999888


Q ss_pred             cCChhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          139 ALTEQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       139 p~t~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      ... .+   + ...++.++++..++.++-
T Consensus       251 g~~-~~---~-~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          251 GAE-AS---I-QAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             CCH-HH---H-HHHHHHSCTTCEEEECSC
T ss_pred             CCh-HH---H-HHHHHHhcCCCEEEEEec
Confidence            632 11   1 456778899999998874

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=96.18  E-value=0.008  Score=48.64  Aligned_cols=93  Identities=12%  Similarity=0.133  Sum_probs=59.4

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCC--------cccccChhhhh---------cCCcEEEEec
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVL--------FPYCANVYDLA---------VNSDVLVVCC  138 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~--------~~~~~~l~el~---------~~aDiv~~~~  138 (223)
                      .++|++.|.|. |.||+.+++.|...|++|++.+|+......        .....++++++         ...|+++.+.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD~lv~~A   84 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVA   84 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhccCCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCCEEEEcc
Confidence            56899999994 899999999999999999999887654321        11112233333         3689998876


Q ss_pred             cCC-------hhh----hhc----------cCHHHHhcCCCCcEEEEcCCCc
Q 035615          139 ALT-------EQT----HHI----------INKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       139 p~t-------~~t----~~l----------i~~~~l~~mk~ga~lIN~arg~  169 (223)
                      -..       +.+    +..          +.+..+..|+++..|||++...
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~  136 (241)
T 1dhr_A           85 GGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKA  136 (241)
T ss_dssp             CCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             cccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHH
Confidence            321       111    111          1133456676667899988643

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.16  E-value=0.0019  Score=58.16  Aligned_cols=62  Identities=16%  Similarity=0.147  Sum_probs=46.5

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------Cc-------ccccChhhh-hcCCcEEEEeccC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LF-------PYCANVYDL-AVNSDVLVVCCAL  140 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~-------~~~~~l~el-~~~aDiv~~~~p~  140 (223)
                      .++|-|+|+|++|+.+|+.|...|++|++.|.+++...      +.       .....|+++ +++||+++.+++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~   78 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNT   78 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSC
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCC
Confidence            57899999999999999999999999999998765321      11       112234444 6889998877653

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.16  E-value=0.012  Score=49.40  Aligned_cols=61  Identities=13%  Similarity=0.065  Sum_probs=44.5

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCC-CC-------------CCCc-------ccccChhhhhcCCcEEEE
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRK-RP-------------SVLF-------PYCANVYDLAVNSDVLVV  136 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~-~~-------------~~~~-------~~~~~l~el~~~aDiv~~  136 (223)
                      .++|.|.|. |.+|+.+++.|...|++|.+.+|++ ..             ..+.       ....++.++++.+|+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~   83 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS   83 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            467999995 9999999999999999999998875 21             0111       112345667788888877


Q ss_pred             ecc
Q 035615          137 CCA  139 (223)
Q Consensus       137 ~~p  139 (223)
                      +..
T Consensus        84 ~a~   86 (321)
T 3c1o_A           84 ALP   86 (321)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            665

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=96.16  E-value=0.0075  Score=52.08  Aligned_cols=30  Identities=23%  Similarity=0.181  Sum_probs=24.5

Q ss_pred             CEEEEEecChHHHHHHHHHHh-CCCEEEEEc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQA-FGFIISYNS  109 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~~~~  109 (223)
                      .+|||+|+|+||+.+++.+.. -+++|.+.+
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~   34 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIN   34 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEec
Confidence            489999999999999999865 467876543

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.15  E-value=0.0013  Score=51.67  Aligned_cols=85  Identities=19%  Similarity=0.252  Sum_probs=55.5

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc---c--cCh-hhh---h--cCCcEEEEeccC
Q 035615           78 GGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY---C--ANV-YDL---A--VNSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~---~--~~l-~el---~--~~aDiv~~~~p~  140 (223)
                      .|++|.|+| .|.||+.+++.++..|++|++.+++++..+     +...   .  .+. +++   .  ...|+++.+.. 
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g-  116 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA-  116 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC-
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCc-
Confidence            488999999 699999999999999999998887653221     1111   0  111 111   1  13688877653 


Q ss_pred             ChhhhhccCHHHHhcCCCCcEEEEcCCC
Q 035615          141 TEQTHHIINKDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       141 t~~t~~li~~~~l~~mk~ga~lIN~arg  168 (223)
                      . .+    -...++.|+++..+|+++..
T Consensus       117 ~-~~----~~~~~~~l~~~G~~v~~g~~  139 (198)
T 1pqw_A          117 G-EA----IQRGVQILAPGGRFIELGKK  139 (198)
T ss_dssp             T-HH----HHHHHHTEEEEEEEEECSCG
T ss_pred             h-HH----HHHHHHHhccCCEEEEEcCC
Confidence            1 11    14566777888888887653

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=96.15  E-value=0.0091  Score=52.56  Aligned_cols=62  Identities=16%  Similarity=0.223  Sum_probs=44.7

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----C--cc---c---ccChhhhhcCCcEEEE
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----L--FP---Y---CANVYDLAVNSDVLVV  136 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~--~~---~---~~~l~el~~~aDiv~~  136 (223)
                      +....+++|+|+|-|..|+.+++.++.+|++|++++ .+....    .  ..   .   ...+.++++.+|+|+.
T Consensus        19 ~~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~   92 (403)
T 3k5i_A           19 GHMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTA   92 (403)
T ss_dssp             --CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEE
Confidence            344678999999999999999999999999998887 442211    1  11   1   1235567889998865

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=96.14  E-value=0.026  Score=48.13  Aligned_cols=92  Identities=18%  Similarity=0.182  Sum_probs=66.5

Q ss_pred             ccCCCEEEEEec---ChHHHHHHHHHHhC-CCEEEEEcCCCCCCC----------C--cccccChhhhhcCCcEEEEecc
Q 035615           76 KLGGMQVGIVRL---GNIGSEVLNRLQAF-GFIISYNSRRKRPSV----------L--FPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        76 ~l~g~~vgIiG~---G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      .+.|+||++||=   |++.++.+..+..+ |++|.+..|..-...          +  +....+++|.++.+|+|....-
T Consensus       148 ~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~~  227 (306)
T 4ekn_B          148 RIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRI  227 (306)
T ss_dssp             CSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEECCC
T ss_pred             CcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeCCc
Confidence            478999999996   68999999999999 999998877532211          1  1235789999999999987531


Q ss_pred             ------CChhh-----hhccCHHHHhcCCCCcEEEEcC-CCc
Q 035615          140 ------LTEQT-----HHIINKDVMAELGKGGMIINVG-RGA  169 (223)
Q Consensus       140 ------~t~~t-----~~li~~~~l~~mk~ga~lIN~a-rg~  169 (223)
                            ...+-     ..-++.+.++.  ++++|.-+. ||.
T Consensus       228 q~er~~~~~e~~~~~~~y~v~~~~l~~--~~ai~mH~lPRg~  267 (306)
T 4ekn_B          228 QKERFPDPNEYEKVKGSYKIKREYVEG--KKFIIMHPLPRVD  267 (306)
T ss_dssp             CGGGCCSHHHHHHHHHHHCBCHHHHTT--CCCEEECCSCCSS
T ss_pred             ccccCCCHHHHHHhccCcEECHHHHcC--CCCEEECCCCCCC
Confidence                  11111     24578888876  788888766 443

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.14  E-value=0.0088  Score=51.95  Aligned_cols=85  Identities=20%  Similarity=0.205  Sum_probs=59.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----Cccc-------ccChhhhhc-----CCcEEEEecc
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----LFPY-------CANVYDLAV-----NSDVLVVCCA  139 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~-------~~~l~el~~-----~aDiv~~~~p  139 (223)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.+     ++..       ..++.+.+.     ..|+++-++.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g  272 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG  272 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence            48899999999999999999999999 7999988776432     2211       122332222     4899998876


Q ss_pred             CChhhhhccCHHHHhcCCCC-cEEEEcCC
Q 035615          140 LTEQTHHIINKDVMAELGKG-GMIINVGR  167 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~mk~g-a~lIN~ar  167 (223)
                      .. .+   + ...++.++++ ..++.++-
T Consensus       273 ~~-~~---~-~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          273 NV-SV---M-RAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             CH-HH---H-HHHHHTBCTTTCEEEECSC
T ss_pred             CH-HH---H-HHHHHHhhccCCEEEEEcc
Confidence            32 21   1 4566778885 78887763

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=96.14  E-value=0.013  Score=50.46  Aligned_cols=66  Identities=20%  Similarity=0.150  Sum_probs=49.5

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCC-CEEEEEcCCCCCC-------CCcc-------cccChhhhhcCCcEEEEecc
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFG-FIISYNSRRKRPS-------VLFP-------YCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G-~~V~~~~~~~~~~-------~~~~-------~~~~l~el~~~aDiv~~~~p  139 (223)
                      .+++++|.|.|. |.||+.+++.|...| ++|++.+|.....       ....       ...+++++++.+|+|+.+..
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~  108 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLAT  108 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence            578999999995 999999999999999 9999998875432       1111       11235567789999987765


Q ss_pred             CC
Q 035615          140 LT  141 (223)
Q Consensus       140 ~t  141 (223)
                      ..
T Consensus       109 ~~  110 (377)
T 2q1s_A          109 YH  110 (377)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.14  E-value=0.0068  Score=51.02  Aligned_cols=64  Identities=13%  Similarity=0.072  Sum_probs=47.8

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCC------------C--------CcccccChhhhhcCCcEE
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPS------------V--------LFPYCANVYDLAVNSDVL  134 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------~--------~~~~~~~l~el~~~aDiv  134 (223)
                      .+.+++|.|.|. |.||+.+++.|...|++|++.+|+....            .        +.....+++++++..|+|
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   87 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEE
Confidence            467999999996 9999999999999999999988763210            0        111123456677789999


Q ss_pred             EEecc
Q 035615          135 VVCCA  139 (223)
Q Consensus       135 ~~~~p  139 (223)
                      +.+..
T Consensus        88 ih~A~   92 (342)
T 1y1p_A           88 AHIAS   92 (342)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            87764

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.13  E-value=0.011  Score=50.05  Aligned_cols=64  Identities=14%  Similarity=0.050  Sum_probs=48.6

Q ss_pred             ccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCC----------------CC-------cccccChhhhhcCC
Q 035615           76 KLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPS----------------VL-------FPYCANVYDLAVNS  131 (223)
Q Consensus        76 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------------~~-------~~~~~~l~el~~~a  131 (223)
                      .+.+++|.|.| .|.||+.+++.|...|++|++.+|.....                ..       .....++.++++.+
T Consensus        22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            36789999999 59999999999999999999998865432                11       11123456778899


Q ss_pred             cEEEEecc
Q 035615          132 DVLVVCCA  139 (223)
Q Consensus       132 Div~~~~p  139 (223)
                      |+|+.+..
T Consensus       102 d~Vih~A~  109 (351)
T 3ruf_A          102 DHVLHQAA  109 (351)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCc
Confidence            99887764

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=96.13  E-value=0.011  Score=51.33  Aligned_cols=38  Identities=29%  Similarity=0.262  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRK  112 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~  112 (223)
                      ..|++++|.|||.|.+|..+++.|...|. ++..+|+..
T Consensus       114 ~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          114 DKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            46889999999999999999999999998 577777653

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.11  E-value=0.023  Score=49.33  Aligned_cols=83  Identities=27%  Similarity=0.308  Sum_probs=54.1

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHhCC-CEEEEE-cCCCCCCC-C-----c---ccc--cChhhhhcCCcEEEEeccCChhh
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQAFG-FIISYN-SRRKRPSV-L-----F---PYC--ANVYDLAVNSDVLVVCCALTEQT  144 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~~G-~~V~~~-~~~~~~~~-~-----~---~~~--~~l~el~~~aDiv~~~~p~t~~t  144 (223)
                      -.+||||| .|.+|+.+.+.|...- +++..+ +++..... .     +   ..+  .+.++++.++|++++|+|.... 
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~~s-   91 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS-   91 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH-
T ss_pred             eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcHHH-
Confidence            45799998 6999999999998764 355544 33211110 0     0   011  2345555789999999995532 


Q ss_pred             hhccCHHHHhcCCCCcEEEEcCCC
Q 035615          145 HHIINKDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~arg  168 (223)
                           ++....+ .|+.+|+.|.-
T Consensus        92 -----~~~~~~~-~g~~VIDlSsd  109 (351)
T 1vkn_A           92 -----YDLVREL-KGVKIIDLGAD  109 (351)
T ss_dssp             -----HHHHTTC-CSCEEEESSST
T ss_pred             -----HHHHHHh-CCCEEEECChh
Confidence                 3444555 79999999854

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=96.11  E-value=0.0095  Score=51.76  Aligned_cols=63  Identities=8%  Similarity=0.106  Sum_probs=45.2

Q ss_pred             CCEEEEEe-cChHHHH-HH----HHHHhCC-CEE----------EEEcCCCCCCC------Cc-ccccChhhhhcC--Cc
Q 035615           79 GMQVGIVR-LGNIGSE-VL----NRLQAFG-FII----------SYNSRRKRPSV------LF-PYCANVYDLAVN--SD  132 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~-~a----~~l~~~G-~~V----------~~~~~~~~~~~------~~-~~~~~l~el~~~--aD  132 (223)
                      ..+||||| +|.||+. .+    +.++..+ ..+          .+++++++...      +. ..+.++++++++  .|
T Consensus         6 ~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD   85 (383)
T 3oqb_A            6 RLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDT   85 (383)
T ss_dssp             EEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCC
T ss_pred             eeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCC
Confidence            35799999 9999998 66    6666543 232          37888775432      23 246899999965  89


Q ss_pred             EEEEeccCC
Q 035615          133 VLVVCCALT  141 (223)
Q Consensus       133 iv~~~~p~t  141 (223)
                      +|++++|..
T Consensus        86 ~V~i~tp~~   94 (383)
T 3oqb_A           86 MFFDAATTQ   94 (383)
T ss_dssp             EEEECSCSS
T ss_pred             EEEECCCch
Confidence            999999854

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.10  E-value=0.0071  Score=50.95  Aligned_cols=37  Identities=22%  Similarity=0.270  Sum_probs=32.6

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           78 GGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        78 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      ++++|.|.|. |.||+.+++.|...|++|++.+|+...
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   39 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGE   39 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCST
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcc
Confidence            5789999996 999999999999999999999987643

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=96.09  E-value=0.0084  Score=51.84  Aligned_cols=30  Identities=20%  Similarity=0.241  Sum_probs=24.7

Q ss_pred             CEEEEEecChHHHHHHHHHHhC-CCEEEEEc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF-GFIISYNS  109 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~  109 (223)
                      .+|||+|+|+||+.+++.+... +++|.+.+
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~   34 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVN   34 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEE
Confidence            4899999999999999998765 67766543

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=96.09  E-value=0.025  Score=50.67  Aligned_cols=105  Identities=14%  Similarity=0.168  Sum_probs=64.3

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEE-Ec-------CCCC--CC-------------CCcc--------cccC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISY-NS-------RRKR--PS-------------VLFP--------YCAN  123 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~-~~-------~~~~--~~-------------~~~~--------~~~~  123 (223)
                      .++.|++|.|.|+|++|+.+++.|...|.+|+. .|       +..-  +.             ....        ...+
T Consensus       226 ~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~i~  305 (449)
T 1bgv_A          226 DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFP  305 (449)
T ss_dssp             CCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEE
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEEeC
Confidence            468899999999999999999999999999875 33       2211  00             0000        0011


Q ss_pred             hhhhh-cCCcEEEEeccCChhhhhccCHHHHhcCCC-C-cEEEEcCCCcccCHHHHHHHHHcC-Cce
Q 035615          124 VYDLA-VNSDVLVVCCALTEQTHHIINKDVMAELGK-G-GMIINVGRGALIDEKEMLQFLVQG-DIN  186 (223)
Q Consensus       124 l~el~-~~aDiv~~~~p~t~~t~~li~~~~l~~mk~-g-a~lIN~arg~~vd~~al~~aL~~~-~i~  186 (223)
                      .++++ -.||+++-|.     +.+.|+.+..+.++. | .+++--+.+.+- .++- +.|.++ .+.
T Consensus       306 ~~e~~~~~~Dil~P~A-----~~~~I~~~na~~l~a~g~kiV~EgAN~p~T-~eA~-~~l~~~~Gi~  365 (449)
T 1bgv_A          306 GEKPWGQKVDIIMPCA-----TQNDVDLEQAKKIVANNVKYYIEVANMPTT-NEAL-RFLMQQPNMV  365 (449)
T ss_dssp             TCCGGGSCCSEEECCS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBC-HHHH-HHHHHCTTCE
T ss_pred             chhhhcCCcceeeccc-----cccccchhhHHHHHhcCCeEEEeCCCCcCC-HHHH-HHHHHcCCEE
Confidence            12233 3678776554     355677776666652 2 356666677754 4443 566666 554

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=96.09  E-value=0.037  Score=46.23  Aligned_cols=37  Identities=14%  Similarity=-0.011  Sum_probs=33.5

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCC
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRR  111 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~  111 (223)
                      .++.||++.|.|. |.||+.+|+.|...|++|++.++.
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   82 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP   82 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999995 899999999999999999988776

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=96.09  E-value=0.0037  Score=53.49  Aligned_cols=78  Identities=9%  Similarity=-0.003  Sum_probs=52.7

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----Ccc-------cccChhhh-hcCCcEEEEeccCChhhhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LFP-------YCANVYDL-AVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~-------~~~~l~el-~~~aDiv~~~~p~t~~t~~  146 (223)
                      .+++.|+|+|++|+.+++.|...|. |.+.+++++..+    +..       ....++++ ++++|.++++++..+.  .
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~--n  191 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSE--T  191 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHH--H
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHH--H
Confidence            5689999999999999999999999 999998775332    111       11234444 7789999998874432  2


Q ss_pred             ccCHHHHhcCCCC
Q 035615          147 IINKDVMAELGKG  159 (223)
Q Consensus       147 li~~~~l~~mk~g  159 (223)
                      +.-....+.+.+.
T Consensus       192 ~~~~~~ar~~~~~  204 (336)
T 1lnq_A          192 IHCILGIRKIDES  204 (336)
T ss_dssp             HHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHCCC
Confidence            2223445555555

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.07  E-value=0.0095  Score=49.52  Aligned_cols=61  Identities=15%  Similarity=0.004  Sum_probs=46.9

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHhCC-CEEEEEcCCCCCC-------CCc-------ccccChhhhhcCCcEEEEecc
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQAFG-FIISYNSRRKRPS-------VLF-------PYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~~G-~~V~~~~~~~~~~-------~~~-------~~~~~l~el~~~aDiv~~~~p  139 (223)
                      .++|.|.|. |.||+.+++.|...| ++|.+.+|++...       .+.       ....++.++++.+|+|+.+.+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            578999996 999999999999888 9999998876542       111       112346677889999988764

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=96.06  E-value=0.0096  Score=55.18  Aligned_cols=37  Identities=22%  Similarity=0.304  Sum_probs=32.8

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR  111 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  111 (223)
                      ..|++++|.|||.|.+|..+|+.|...|. ++..+|..
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            56999999999999999999999999998 57777644

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=96.04  E-value=0.004  Score=53.35  Aligned_cols=85  Identities=18%  Similarity=0.110  Sum_probs=58.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC---C-ccc-----ccChhhhh-----cCCcEEEEeccCCh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV---L-FPY-----CANVYDLA-----VNSDVLVVCCALTE  142 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~---~-~~~-----~~~l~el~-----~~aDiv~~~~p~t~  142 (223)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.+   . +..     ..++.+.+     ...|+|+-++...+
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~la~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~  243 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNEA  243 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTTCSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhHHhccCcCccCHHHHHHHhcCCCCCEEEECCCCHH
Confidence            68999999999999999999999999 8999987653311   1 111     11233322     25799988876322


Q ss_pred             hhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          143 QTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       143 ~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      ..     +..++.|+++..++.++.
T Consensus       244 ~~-----~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          244 AI-----HQGLMALIPGGEARILGI  263 (343)
T ss_dssp             HH-----HHHHHHEEEEEEEEECCC
T ss_pred             HH-----HHHHHHHhcCCEEEEEec
Confidence            21     345667777777877764

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=96.04  E-value=0.017  Score=49.59  Aligned_cols=89  Identities=16%  Similarity=0.208  Sum_probs=58.0

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHhCCC-------EEEEEcCC----CCCC--------C---Cc----ccccChhhhhcCC
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQAFGF-------IISYNSRR----KRPS--------V---LF----PYCANVYDLAVNS  131 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~----~~~~--------~---~~----~~~~~l~el~~~a  131 (223)
                      .++|.|+|. |.+|+.++..|...|+       +|..+|+.    .+..        .   .+    ....++.+.++.|
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a   84 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA   84 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence            468999997 9999999999987775       78889887    2101        0   11    1135678889999


Q ss_pred             cEEEEeccCCh--h-hh-hcc--C----H---HHHhcC-CCCcEEEEcCC
Q 035615          132 DVLVVCCALTE--Q-TH-HII--N----K---DVMAEL-GKGGMIINVGR  167 (223)
Q Consensus       132 Div~~~~p~t~--~-t~-~li--~----~---~~l~~m-k~ga~lIN~ar  167 (223)
                      |+|+.+.....  . ++ .++  |    .   +.+... ++.++||+++.
T Consensus        85 D~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN  134 (329)
T 1b8p_A           85 DVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN  134 (329)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence            99988764221  1 11 010  1    1   223334 47889999983

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.03  E-value=0.018  Score=51.64  Aligned_cols=92  Identities=14%  Similarity=0.185  Sum_probs=64.8

Q ss_pred             cccCCCEEEEEecC----------hHHHHHHHHHHhCCCEEEEEcCCCCCCC------CcccccChhhhhcCCcEEEEec
Q 035615           75 FKLGGMQVGIVRLG----------NIGSEVLNRLQAFGFIISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        75 ~~l~g~~vgIiG~G----------~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~  138 (223)
                      ..+.|++|+|+|+-          .=...+++.|...|++|.+|||.-....      ......++++.++.+|.|++++
T Consensus       314 ~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t  393 (450)
T 3gg2_A          314 GNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHVT  393 (450)
T ss_dssp             TCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEECS
T ss_pred             ccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEcc
Confidence            45889999999973          3468899999999999999998763210      1223467889999999999998


Q ss_pred             cCChhhhhccCHH-HHhcCCCCcEEEEcCCCcc
Q 035615          139 ALTEQTHHIINKD-VMAELGKGGMIINVGRGAL  170 (223)
Q Consensus       139 p~t~~t~~li~~~-~l~~mk~ga~lIN~arg~~  170 (223)
                      ...+ -+. ++-+ ..+.|+ +.+++|+ |+-+
T Consensus       394 ~~~~-f~~-~~~~~~~~~~~-~~~i~D~-r~~~  422 (450)
T 3gg2_A          394 EWKE-FRM-PDWSALSQAMA-ASLVIDG-RNVY  422 (450)
T ss_dssp             CCGG-GSS-CCHHHHHHHSS-SCEEEES-SCCC
T ss_pred             CCHH-Hhh-cCHHHHHHhcC-CCEEEEC-CCCC
Confidence            7543 222 3444 344566 5678885 5543

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.03  E-value=0.008  Score=51.52  Aligned_cols=64  Identities=16%  Similarity=0.042  Sum_probs=47.1

Q ss_pred             ccCCCEEEEEe-cChHHHHHHHHHHhC-CCEEEEEcCCCCCCCC------c-------c-cccChhhhhcCCcEEEEecc
Q 035615           76 KLGGMQVGIVR-LGNIGSEVLNRLQAF-GFIISYNSRRKRPSVL------F-------P-YCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        76 ~l~g~~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~------~-------~-~~~~l~el~~~aDiv~~~~p  139 (223)
                      .+.+++|.|.| .|.||+.+++.|... |++|++.+|+......      .       . ...++.++++.+|+|+.+..
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~  100 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVA  100 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCc
Confidence            46789999999 699999999999887 9999999987654321      1       1 12235567788999987654

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=96.03  E-value=0.0072  Score=51.64  Aligned_cols=61  Identities=16%  Similarity=0.202  Sum_probs=43.3

Q ss_pred             CCEEEEEecChHHHHHHHHHHh--CCCEE-EEEcCCCCC-CC------Ccc-cccChhhhhc-----CCcEEEEecc
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQA--FGFII-SYNSRRKRP-SV------LFP-YCANVYDLAV-----NSDVLVVCCA  139 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~--~G~~V-~~~~~~~~~-~~------~~~-~~~~l~el~~-----~aDiv~~~~p  139 (223)
                      ..+|||||+|.||+.+++.+..  -++++ .++|+++.. ..      +.. ...+.+++++     ..|+|+.++|
T Consensus         4 ~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp   80 (312)
T 1nvm_B            4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS   80 (312)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC
T ss_pred             CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCC
Confidence            3589999999999999999844  46665 467877654 11      222 1345677754     4799999998

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.02  E-value=0.0099  Score=55.20  Aligned_cols=65  Identities=18%  Similarity=0.248  Sum_probs=47.4

Q ss_pred             CcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCC
Q 035615           34 DLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRK  112 (223)
Q Consensus        34 ~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~  112 (223)
                      +....||.+.-+-|.+.|.          ..|...    -...|++++|.|||.|.+|..+|+.|...|. ++..+|...
T Consensus       295 dp~~la~~~~~Lnlklm~w----------Rllp~~----g~ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          295 DPLKIADQSVDLNLKLMKW----------RILPDL----NLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             CHHHHHHHHHHHHHHHHHH----------HTCTTC----CHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CHHHHHhhhhhhhhHHHHH----------hhcchh----hHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            5566777777776655542          223321    1136899999999999999999999999998 577777653

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=96.02  E-value=0.006  Score=52.71  Aligned_cols=30  Identities=23%  Similarity=0.334  Sum_probs=24.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhC-CCEEEEEc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF-GFIISYNS  109 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~  109 (223)
                      .+|||+|+|.||+.+.+.|... .++|.+.+
T Consensus         2 ikVgI~G~G~iGr~l~R~l~~~~~veivain   32 (334)
T 3cmc_O            2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVN   32 (334)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTCTTEEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHhCCCCeEEEEEe
Confidence            3799999999999999998765 56776543

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=96.01  E-value=0.0064  Score=52.50  Aligned_cols=84  Identities=14%  Similarity=0.005  Sum_probs=48.8

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHhC---CCEEEEEc-CCCCCC-C---Cc-ccccCh-hhhhcCCcEEEEeccCChhhhhc
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQAF---GFIISYNS-RRKRPS-V---LF-PYCANV-YDLAVNSDVLVVCCALTEQTHHI  147 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~~---G~~V~~~~-~~~~~~-~---~~-~~~~~l-~el~~~aDiv~~~~p~t~~t~~l  147 (223)
                      ..+|+|+| +|.+|+.+.+.|...   .+++..+. ++.... .   +. ....++ .+.+..+|+|+.|+|.... ...
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~~~s-~~~   81 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGELS-AKW   81 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCHHHH-HHH
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCchHH-HHH
Confidence            36899999 999999999998875   34665543 322111 0   10 011111 1245689999999984322 221


Q ss_pred             cCHHHHhcCCCCcEEEEcCC
Q 035615          148 INKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       148 i~~~~l~~mk~ga~lIN~ar  167 (223)
                      . ..   .++.|+.+|+.+-
T Consensus        82 a-~~---~~~~G~~vId~s~   97 (336)
T 2r00_A           82 A-PI---AAEAGVVVIDNTS   97 (336)
T ss_dssp             H-HH---HHHTTCEEEECSS
T ss_pred             H-HH---HHHcCCEEEEcCC
Confidence            1 11   2345777777663

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=96.01  E-value=0.017  Score=51.38  Aligned_cols=91  Identities=10%  Similarity=0.130  Sum_probs=67.4

Q ss_pred             cCCCEEEEEe-----cCh---HHHHHHHHHHhCCCEEEEEcCCCCC-CC-------------C--cccccChhhhhcCCc
Q 035615           77 LGGMQVGIVR-----LGN---IGSEVLNRLQAFGFIISYNSRRKRP-SV-------------L--FPYCANVYDLAVNSD  132 (223)
Q Consensus        77 l~g~~vgIiG-----~G~---iG~~~a~~l~~~G~~V~~~~~~~~~-~~-------------~--~~~~~~l~el~~~aD  132 (223)
                      |.|++|+|+|     +|.   +.++++..+..+|++|.+..|..-. ..             +  +....+++|.++.+|
T Consensus       186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~eav~~AD  265 (418)
T 2yfk_A          186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEAFKDAD  265 (418)
T ss_dssp             GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHHHHHTTCS
T ss_pred             cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhcCCC
Confidence            8899999997     354   9999999999999999988876422 11             1  133578999999999


Q ss_pred             EEEEeccCC----------------h-------------h--hhhccCHHHHhcCCC-CcEEEEcCC
Q 035615          133 VLVVCCALT----------------E-------------Q--THHIINKDVMAELGK-GGMIINVGR  167 (223)
Q Consensus       133 iv~~~~p~t----------------~-------------~--t~~li~~~~l~~mk~-ga~lIN~ar  167 (223)
                      +|..-+=..                +             +  ...-++++.++.+|+ +++|.-+.-
T Consensus       266 VVytd~W~sm~~Q~ER~~~~~~g~~~~~~~~~~~~~~~~~~~~~y~vt~elm~~ak~~dai~MHcLP  332 (418)
T 2yfk_A          266 VVYPKSWAPFAAMEKRTELYGNGDQAGIDQLEQELLSQNKKHKDWECTEELMKTTKDGKALYMHCLP  332 (418)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHGGGTTCCBCHHHHHTSGGGCCEECCCSC
T ss_pred             EEEEccccchhHHHHHhhhhccccchhhhhhhhhhhhHHHHHhhcCCCHHHHHhcCCCCeEEECCCC
Confidence            998853100                0             0  124568999999986 899998774

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=96.01  E-value=0.016  Score=50.27  Aligned_cols=82  Identities=13%  Similarity=0.103  Sum_probs=48.6

Q ss_pred             CEEEEEecChHHHHHHHHHHhC-CCEEEEE-cCCCCCCC------------Cc--------------ccccChhhhhcCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF-GFIISYN-SRRKRPSV------------LF--------------PYCANVYDLAVNS  131 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~-~~~~~~~~------------~~--------------~~~~~l~el~~~a  131 (223)
                      .+|||+|+|+||+.+++.+... ++++.++ ++++....            .+              ....+.++++..+
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v   82 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA   82 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC
Confidence            4899999999999999998765 5786654 43221100            00              0011344556789


Q ss_pred             cEEEEeccCChhhhhccCHHHHhcCCCCcEEEEc
Q 035615          132 DVLVVCCALTEQTHHIINKDVMAELGKGGMIINV  165 (223)
Q Consensus       132 Div~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~  165 (223)
                      |+|+.|+|.....+..   + -..++.|..+|..
T Consensus        83 DiV~eatg~~~s~~~a---~-~~~l~aG~~VI~s  112 (343)
T 2yyy_A           83 DIVVDGAPKKIGKQNL---E-NIYKPHKVKAILQ  112 (343)
T ss_dssp             SEEEECCCTTHHHHHH---H-HTTTTTTCEEEEC
T ss_pred             CEEEECCCccccHHHH---H-HHHHHCCCEEEEC
Confidence            9999998854211111   1 1345666665543

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.00  E-value=0.0084  Score=48.07  Aligned_cols=63  Identities=16%  Similarity=0.079  Sum_probs=47.6

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHHhC--CCEEEEEcCCCCCC----C-------CcccccChhhhhcCCcEEEEeccC
Q 035615           78 GGMQVGIVR-LGNIGSEVLNRLQAF--GFIISYNSRRKRPS----V-------LFPYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG-~G~iG~~~a~~l~~~--G~~V~~~~~~~~~~----~-------~~~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      .+++|.|.| .|.||+.+++.|...  |++|+..+|++...    .       +.....+++++++..|+|+.+...
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA   79 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence            578999999 699999999999988  89999998864321    0       111224566788899999887653

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.99  E-value=0.0054  Score=53.05  Aligned_cols=84  Identities=14%  Similarity=0.063  Sum_probs=57.8

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccccc-----cChhh----hhc--CCcEEEEeccCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYC-----ANVYD----LAV--NSDVLVVCCALT  141 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~-----~~l~e----l~~--~aDiv~~~~p~t  141 (223)
                      .|++|.|+|.|.+|...++.++.+|++|++.++++++.+     ++...     .++.+    +..  ..|+|+-++. .
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g-~  267 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAG-G  267 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETT-S
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-h
Confidence            489999999999999999999999999999887754321     22110     12222    222  5788888876 2


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      +     .-...++.++++..++.++.
T Consensus       268 ~-----~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          268 A-----GLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             S-----CHHHHHHHEEEEEEEEEECC
T ss_pred             H-----HHHHHHHHhhcCCEEEEEec
Confidence            1     11456677888888887763

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.99  E-value=0.0037  Score=53.50  Aligned_cols=84  Identities=14%  Similarity=0.140  Sum_probs=56.8

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc-----ccChhhhh----cCCcEEEEeccCChh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY-----CANVYDLA----VNSDVLVVCCALTEQ  143 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~-----~~~l~el~----~~aDiv~~~~p~t~~  143 (223)
                      .|++|.|+|.|.+|...++.++.+|++|++.++++++.+     ++..     ..++.+.+    ...|+++.+....+.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~  245 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKA  245 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHH
Confidence            488999999999999999999999999999987664322     2211     11222222    257888887652221


Q ss_pred             hhhccCHHHHhcCCCCcEEEEcC
Q 035615          144 THHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                          + ...++.++++..++.++
T Consensus       246 ----~-~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          246 ----F-SQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             ----H-HHHHHHEEEEEEEEECS
T ss_pred             ----H-HHHHHHhccCCEEEEeC
Confidence                1 34556677777777765

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=95.98  E-value=0.049  Score=47.40  Aligned_cols=92  Identities=13%  Similarity=0.101  Sum_probs=66.7

Q ss_pred             cccCCCEEEEEec--ChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------CcccccChhhhhcCCcEEEE
Q 035615           75 FKLGGMQVGIVRL--GNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------LFPYCANVYDLAVNSDVLVV  136 (223)
Q Consensus        75 ~~l~g~~vgIiG~--G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~~~~~~~l~el~~~aDiv~~  136 (223)
                      ..+.|++|++||=  +++.++.+..+..+|++|.+..|..-...                .+....+++|.++.+|+|..
T Consensus       177 ~~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt  256 (358)
T 4h31_A          177 KALADIQFAYLGDARNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYT  256 (358)
T ss_dssp             CCGGGCEEEEESCTTSHHHHHHHHHHHHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEE
T ss_pred             CCcCceEEEecCCCCcccchHHHHHHHhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHhccCcEEEE
Confidence            3588999999994  58999999999999999998877432111                12235789999999999975


Q ss_pred             eccC----Chh---------hhhccCHHHHhcC-CCCcEEEEcC
Q 035615          137 CCAL----TEQ---------THHIINKDVMAEL-GKGGMIINVG  166 (223)
Q Consensus       137 ~~p~----t~~---------t~~li~~~~l~~m-k~ga~lIN~a  166 (223)
                      -.=.    .++         ...-++.+.++++ ||+++|.-+.
T Consensus       257 ~~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~L  300 (358)
T 4h31_A          257 DVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCL  300 (358)
T ss_dssp             CCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEECS
T ss_pred             EEEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECCC
Confidence            4311    111         1234788888764 7899998876

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.97  E-value=0.024  Score=48.90  Aligned_cols=63  Identities=17%  Similarity=0.194  Sum_probs=48.0

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cc-------ccccChhhhhcCCcEEEEecc
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LF-------PYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~-------~~~~~l~el~~~aDiv~~~~p  139 (223)
                      ..+++|.|.|. |.||+.+++.|...|++|++.+|......     ..       ....+++++++.+|+|+.+..
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~  102 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA  102 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECce
Confidence            46789999997 99999999999999999999988765432     11       112345677889999987764

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.96  E-value=0.037  Score=46.01  Aligned_cols=62  Identities=23%  Similarity=0.136  Sum_probs=44.5

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCC-------------CCc-------ccccChhhhhcCCcEEEEe
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPS-------------VLF-------PYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------------~~~-------~~~~~l~el~~~aDiv~~~  137 (223)
                      .++|.|.| .|.+|+.+++.|...|++|.+.+|+....             .+.       ....++.++++.+|+|+.+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   83 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   83 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence            46899999 59999999999999999999998875321             111       1123455667778877776


Q ss_pred             ccC
Q 035615          138 CAL  140 (223)
Q Consensus       138 ~p~  140 (223)
                      ...
T Consensus        84 a~~   86 (313)
T 1qyd_A           84 LAG   86 (313)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            653

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=95.95  E-value=0.014  Score=52.93  Aligned_cols=61  Identities=23%  Similarity=0.159  Sum_probs=47.8

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcc--cccChhhhhcCCcEEEEecc
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFP--YCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~--~~~~l~el~~~aDiv~~~~p  139 (223)
                      +++|.|.| .|.||+.+++.|...|++|++.+|+........  ....+.+.+..+|+|+.+..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d~~~~~~~~l~~~D~Vih~A~  210 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPLNPASDLLDGADVLVHLAG  210 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCTTSCCTTTTTTCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeecccchhHHhcCCCCEEEECCC
Confidence            78999999 699999999999999999999998876543211  12345667889999987664

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=95.92  E-value=0.012  Score=49.72  Aligned_cols=66  Identities=21%  Similarity=0.032  Sum_probs=44.6

Q ss_pred             ccccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------Ccc-------cccChhhhhcC--CcEEEE
Q 035615           74 GFKLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------LFP-------YCANVYDLAVN--SDVLVV  136 (223)
Q Consensus        74 ~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~-------~~~~l~el~~~--aDiv~~  136 (223)
                      ...+.+++|.|.| .|.||+.+++.|...|++|++.+|......       ...       ...+++++++.  .|+|+.
T Consensus        16 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih   95 (333)
T 2q1w_A           16 PRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVH   95 (333)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             eecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEE
Confidence            3457899999998 699999999999999999999988653211       110       11234556666  898887


Q ss_pred             ecc
Q 035615          137 CCA  139 (223)
Q Consensus       137 ~~p  139 (223)
                      +..
T Consensus        96 ~A~   98 (333)
T 2q1w_A           96 TAA   98 (333)
T ss_dssp             CCC
T ss_pred             Cce
Confidence            664

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=95.91  E-value=0.014  Score=47.31  Aligned_cols=92  Identities=18%  Similarity=0.184  Sum_probs=58.0

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCC-c----ccccChhhhhcCC----cEEEEeccCCh-h--hhh
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVL-F----PYCANVYDLAVNS----DVLVVCCALTE-Q--THH  146 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~-~----~~~~~l~el~~~a----Div~~~~p~t~-~--t~~  146 (223)
                      |++.|.|. |.||+.+++.|...|++|++.+|+...... .    ....++++++++.    |+|+.+.-... .  -+.
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~~~~~~~~~   81 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGN   81 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCTTCSSHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhccccccCCCCHHHHHHHHHHhCCCCCEEEECCCCCCCcccHHH
Confidence            57888884 899999999999999999999887654321 1    1123345556544    99988764332 0  010


Q ss_pred             c----------cCHHHHhcCCC--CcEEEEcCCCccc
Q 035615          147 I----------INKDVMAELGK--GGMIINVGRGALI  171 (223)
Q Consensus       147 l----------i~~~~l~~mk~--ga~lIN~arg~~v  171 (223)
                      +          +.+..++.|++  ...|||++.....
T Consensus        82 ~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~  118 (257)
T 1fjh_A           82 VVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASA  118 (257)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGG
T ss_pred             HHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhh
Confidence            1          12334455533  3689999876544

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=95.89  E-value=0.01  Score=51.65  Aligned_cols=31  Identities=23%  Similarity=0.463  Sum_probs=24.5

Q ss_pred             CEEEEEecChHHHHHHHHHHhC--C--CEEE-EEcC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF--G--FIIS-YNSR  110 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~--G--~~V~-~~~~  110 (223)
                      .+|||||+|.||+.+++.+...  |  ++|. ++++
T Consensus         5 i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~   40 (358)
T 1ebf_A            5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEA   40 (358)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECS
T ss_pred             EEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEEC
Confidence            4799999999999999999875  3  5654 4554

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.87  E-value=0.0033  Score=51.73  Aligned_cols=59  Identities=15%  Similarity=0.098  Sum_probs=43.5

Q ss_pred             EEEEEec-ChHHHHHHHHHHhC--CCEEEEEcCCCCCCC-----Cc-------ccccChhhhhcCCcEEEEecc
Q 035615           81 QVGIVRL-GNIGSEVLNRLQAF--GFIISYNSRRKRPSV-----LF-------PYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        81 ~vgIiG~-G~iG~~~a~~l~~~--G~~V~~~~~~~~~~~-----~~-------~~~~~l~el~~~aDiv~~~~p  139 (223)
                      +|.|.|. |.||+.+++.|...  |++|.+.+|++....     +.       ....++.++++.+|+|+.+..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            4788886 99999999999987  999999988765421     11       112346677889999987664

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=95.86  E-value=0.0073  Score=52.29  Aligned_cols=29  Identities=21%  Similarity=0.250  Sum_probs=24.0

Q ss_pred             CEEEEEecChHHHHHHHHHHhC---CCEEEEE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF---GFIISYN  108 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~---G~~V~~~  108 (223)
                      .+|||+|+|+||+.+.+.|...   +++|.++
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaI   34 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAI   34 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence            4899999999999999998765   3777654

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.85  E-value=0.017  Score=48.58  Aligned_cols=61  Identities=11%  Similarity=0.066  Sum_probs=45.0

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cc-------ccccChhhhhcCCcEEEEecc
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LF-------PYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~-------~~~~~l~el~~~aDiv~~~~p  139 (223)
                      .++|.|.| .|.||+.+++.|...|++|++.+|++....     ..       ....++.++++.+|+|+.+..
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~   86 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG   86 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            35899999 599999999999999999999988765421     11       112345677888999987764

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.84  E-value=0.0078  Score=52.24  Aligned_cols=85  Identities=20%  Similarity=0.301  Sum_probs=58.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----Cccc-----ccChhhhhc--------CCcEEEEec
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----LFPY-----CANVYDLAV--------NSDVLVVCC  138 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~-----~~~l~el~~--------~aDiv~~~~  138 (223)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.+     ++..     ..++.+.+.        ..|+|+-++
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~  261 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA  261 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence            48899999999999999999999999 8988887764322     2211     123333333        379998887


Q ss_pred             cCChhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          139 ALTEQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       139 p~t~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      ... .+   + ...++.++++..++.++-
T Consensus       262 G~~-~~---~-~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          262 GVA-ET---V-KQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             CCH-HH---H-HHHHHHEEEEEEEEECSC
T ss_pred             CCH-HH---H-HHHHHHhccCCEEEEEec
Confidence            522 21   1 345667788888887763

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.84  E-value=0.0072  Score=49.79  Aligned_cols=61  Identities=13%  Similarity=-0.062  Sum_probs=45.7

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccc----cccChhhhhcCCcEEEEeccCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFP----YCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~----~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      .++|.|.|.|.||+.+++.|...|++|++.+|++....     +..    ...+++  +..+|+|+.+....
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~   74 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD   74 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence            47999999999999999999999999999998765321     111    112333  77899998877543

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=95.84  E-value=0.012  Score=49.20  Aligned_cols=63  Identities=19%  Similarity=0.175  Sum_probs=44.4

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------CcccccChhhhhcC--CcEEEEeccC
Q 035615           78 GGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV--------LFPYCANVYDLAVN--SDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------~~~~~~~l~el~~~--aDiv~~~~p~  140 (223)
                      ..++|.|.| .|.||+.+++.|...|++|++.+|......        +.....+++++++.  .|+|+.+...
T Consensus        11 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   84 (321)
T 2pk3_A           11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAK   84 (321)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSC
T ss_pred             CcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccccceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCcc
Confidence            467899998 599999999999999999999988765311        11112334556654  8999877654

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.83  E-value=0.0062  Score=52.19  Aligned_cols=84  Identities=21%  Similarity=0.223  Sum_probs=57.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhC--CCEEEEEcCCCCCCC-----CcccccC-------hhhhhc--CCcEEEEeccCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAF--GFIISYNSRRKRPSV-----LFPYCAN-------VYDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~~~~~-----~~~~~~~-------l~el~~--~aDiv~~~~p~t  141 (223)
                      .|.+|.|+|.|.+|...++.++.+  |++|++.++++++.+     ++....+       .+++-.  ..|+|+-++...
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~  249 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTE  249 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCCh
Confidence            689999999999999999999999  999999987764322     2221111       112221  579999888632


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcC
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      +..     ...++.++++..++.++
T Consensus       250 ~~~-----~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          250 ETT-----YNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             HHH-----HHHHHHEEEEEEEEECC
T ss_pred             HHH-----HHHHHHhhcCCEEEEeC
Confidence            111     34566677777777765

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=95.83  E-value=0.0053  Score=52.57  Aligned_cols=60  Identities=12%  Similarity=0.080  Sum_probs=44.6

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEE-EEcCCCC-CCC---------C--cccccChhhhhc--CCcEEEEeccC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIIS-YNSRRKR-PSV---------L--FPYCANVYDLAV--NSDVLVVCCAL  140 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~~-~~~---------~--~~~~~~l~el~~--~aDiv~~~~p~  140 (223)
                      .+|||||+|.+|+..++.+ .-++++. ++|+++. ...         +  ...+.+++++++  +.|+|++++|.
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~   77 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVF   77 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSH
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCc
Confidence            5899999999999777766 5577865 6787762 221         1  235689999986  48999999884

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=95.82  E-value=0.018  Score=48.82  Aligned_cols=109  Identities=14%  Similarity=0.212  Sum_probs=62.5

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCCC--EEEEEcC--CCCCCCC----c----------ccccChhhhhcCCcEEEEeccC
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFGF--IISYNSR--RKRPSVL----F----------PYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G~--~V~~~~~--~~~~~~~----~----------~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      ++|+|+| .|.+|+.++..|...|.  ++..+|+  .....++    .          ....+..+.++.+|+|+++...
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~   80 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI   80 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence            4899999 99999999999987665  6888887  4322110    0          0001225678999999998753


Q ss_pred             Chh---hh-hcc--C----H---HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCceEE
Q 035615          141 TEQ---TH-HII--N----K---DVMAELGKGGMIINVGRGALIDEKEMLQF--LVQGDINGV  188 (223)
Q Consensus       141 t~~---t~-~li--~----~---~~l~~mk~ga~lIN~arg~~vd~~al~~a--L~~~~i~~a  188 (223)
                      ...   ++ .++  |    +   +.+....+.+++++++.--=+....+.+.  +...++.|.
T Consensus        81 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~~~~~~~p~~rviG~  143 (303)
T 1o6z_A           81 PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSREQVIGF  143 (303)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHHHHHSSSCGGGEEEC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHcCCCHHHeeec
Confidence            211   11 000  1    1   22334467899999744322223333333  333455544

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=95.81  E-value=0.015  Score=46.79  Aligned_cols=60  Identities=18%  Similarity=0.104  Sum_probs=43.9

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc-----ccccChhhhhc----CCcEEEEecc
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLF-----PYCANVYDLAV----NSDVLVVCCA  139 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~-----~~~~~l~el~~----~aDiv~~~~p  139 (223)
                      |++.|.|. |.||+.+++.|...|++|++.+|+.......     ....+++++++    ..|+|+.+..
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag   71 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAG   71 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCC
Confidence            57899986 9999999999999999999998876543211     11223445554    7899988764

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.80  E-value=0.024  Score=45.26  Aligned_cols=60  Identities=12%  Similarity=0.060  Sum_probs=43.6

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc-------ccccChhhhhc------CCcEEEEecc
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF-------PYCANVYDLAV------NSDVLVVCCA  139 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~-------~~~~~l~el~~------~aDiv~~~~p  139 (223)
                      +|++.|.| .|.||+.+++.|...|++|++.+|+.. ....       ....+++++++      ..|+++.+..
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag   75 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-GEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAG   75 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-SSSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-ccceEEEeCCCCCHHHHHHHHHHHHhhCCceEEEEccc
Confidence            68899998 599999999999999999999888765 2211       11223444554      6788887653

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=95.80  E-value=0.0061  Score=51.73  Aligned_cols=88  Identities=23%  Similarity=0.195  Sum_probs=55.6

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC-------------Cc-c--cccChhhhhcCCcEEEEec--c
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV-------------LF-P--YCANVYDLAVNSDVLVVCC--A  139 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-------------~~-~--~~~~l~el~~~aDiv~~~~--p  139 (223)
                      +||+|||.|.||+.+|-.|...+.  ++..+|......+             .. .  ...+..+.++.||+|+++.  |
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG~p   80 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecCCC
Confidence            589999999999999998876554  7889998653221             00 0  1122345689999999986  3


Q ss_pred             CChh-hh-hcc--CH-------HHHhcCCCCcEEEEcCC
Q 035615          140 LTEQ-TH-HII--NK-------DVMAELGKGGMIINVGR  167 (223)
Q Consensus       140 ~t~~-t~-~li--~~-------~~l~~mk~ga~lIN~ar  167 (223)
                      -.|. || .++  |.       +.+..-.|.++++.++.
T Consensus        81 rkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN  119 (294)
T 2x0j_A           81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (294)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence            2221 22 122  22       22333467888888754

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=95.79  E-value=0.015  Score=49.53  Aligned_cols=66  Identities=17%  Similarity=0.085  Sum_probs=49.1

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCC----------------CCc-------ccccChhhhhcC
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPS----------------VLF-------PYCANVYDLAVN  130 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------------~~~-------~~~~~l~el~~~  130 (223)
                      ..+.+++|.|.|. |.||+.+++.|...|++|++.+|.....                ...       ....+++++++.
T Consensus        23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~  102 (352)
T 1sb8_A           23 LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAG  102 (352)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTT
T ss_pred             cCccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcC
Confidence            3477899999997 9999999999999999999998865311                111       112345567889


Q ss_pred             CcEEEEeccC
Q 035615          131 SDVLVVCCAL  140 (223)
Q Consensus       131 aDiv~~~~p~  140 (223)
                      .|+|+.+...
T Consensus       103 ~d~vih~A~~  112 (352)
T 1sb8_A          103 VDYVLHQAAL  112 (352)
T ss_dssp             CSEEEECCSC
T ss_pred             CCEEEECCcc
Confidence            9999877653

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.76  E-value=0.0085  Score=49.42  Aligned_cols=38  Identities=21%  Similarity=0.316  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .+.||++.|.|. |.||+.+++.|...|++|++.+|+..
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~   41 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER   41 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            377999999995 89999999999999999999988753

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=95.76  E-value=0.01  Score=48.86  Aligned_cols=39  Identities=21%  Similarity=0.335  Sum_probs=34.3

Q ss_pred             cccCCCEEEEEecC---hHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           75 FKLGGMQVGIVRLG---NIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        75 ~~l~g~~vgIiG~G---~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .+|+||++.|-|.+   .||+++|+.|...|++|++.+|+.+
T Consensus         2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~   43 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKER   43 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence            35899999999974   5999999999999999999988754

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=95.75  E-value=0.0087  Score=50.27  Aligned_cols=41  Identities=20%  Similarity=-0.009  Sum_probs=35.7

Q ss_pred             CccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           73 LGFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        73 ~~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      ...++.||++.|.|. |.||+++|+.|...|++|++.+++..
T Consensus        22 m~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~   63 (299)
T 3t7c_A           22 MAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQ   63 (299)
T ss_dssp             CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSC
T ss_pred             cccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccc
Confidence            345689999999995 78999999999999999999888743

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.73  E-value=0.0065  Score=52.12  Aligned_cols=83  Identities=17%  Similarity=0.165  Sum_probs=56.1

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccccc----cChhh----hhc--CCcEEEEeccCC
Q 035615           78 GGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYC----ANVYD----LAV--NSDVLVVCCALT  141 (223)
Q Consensus        78 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~----~~l~e----l~~--~aDiv~~~~p~t  141 (223)
                      .|++|.|+|. |.||...++.++.+|++|++.+++.++.+     ++...    .++.+    +..  ..|+++.++...
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~~  238 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGP  238 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCchh
Confidence            4899999998 99999999999999999999888665432     11110    12222    221  478888877531


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcC
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                            .-...+..++++..++.++
T Consensus       239 ------~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          239 ------AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             ------CHHHHHHTEEEEEEEEEC-
T ss_pred             ------HHHHHHHhhcCCCEEEEEE
Confidence                  1245667778888888776

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=95.72  E-value=0.021  Score=49.10  Aligned_cols=58  Identities=10%  Similarity=0.102  Sum_probs=42.1

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-Cc----cc---ccC---hhhhhcCCcEEEEe
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-LF----PY---CAN---VYDLAVNSDVLVVC  137 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~~----~~---~~~---l~el~~~aDiv~~~  137 (223)
                      |||+|+|-|..|..+++.++.+|++|+++|+++.... ..    ..   ..+   +.++.+.+|.|+..
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~~~~~~~aD~~~~~~~~~d~~~~~~~~~~~D~v~~~   70 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQALIRNYADEFYCFDVIKEPEKLLELSKRVDAVLPV   70 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTTSSEEEECCTTTCHHHHHHHHTSSSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCChhHhhCCEEEECCCCcCHHHHHHHhcCCCEEEEC
Confidence            7999999999999999999999999999887664321 11    00   112   23456789988654

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=95.71  E-value=0.02  Score=46.73  Aligned_cols=42  Identities=10%  Similarity=-0.001  Sum_probs=33.3

Q ss_pred             CccccCCCEEEEEe-cChHHHHHHHHHHhCC---CEEEEEcCCCCC
Q 035615           73 LGFKLGGMQVGIVR-LGNIGSEVLNRLQAFG---FIISYNSRRKRP  114 (223)
Q Consensus        73 ~~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G---~~V~~~~~~~~~  114 (223)
                      ....+.++++.|.| .|.||+.+++.|...|   ++|+..+|+...
T Consensus        15 ~~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~   60 (267)
T 1sny_A           15 VPRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQ   60 (267)
T ss_dssp             -----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTS
T ss_pred             cccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhh
Confidence            44678999999998 5999999999999999   999999887653

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=95.70  E-value=0.008  Score=51.97  Aligned_cols=29  Identities=21%  Similarity=0.277  Sum_probs=23.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhC---CCEEEEE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF---GFIISYN  108 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~---G~~V~~~  108 (223)
                      .+|||+|+|.||+.+.+.|...   .++|.++
T Consensus         2 ikVgInG~G~IGr~llR~l~~~~~p~~eivaI   33 (337)
T 1rm4_O            2 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVI   33 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSCSEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence            3799999999999999998765   3466543

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=95.66  E-value=0.0088  Score=51.77  Aligned_cols=30  Identities=23%  Similarity=0.330  Sum_probs=24.7

Q ss_pred             CEEEEEecChHHHHHHHHHHh---C-CCEEEEEc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQA---F-GFIISYNS  109 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~---~-G~~V~~~~  109 (223)
                      .+|||+|+|.||+.+.+.|..   . .++|.+.+
T Consensus         3 ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~   36 (339)
T 2x5j_O            3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAIN   36 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEe
Confidence            489999999999999999877   3 67876543

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.64  E-value=0.043  Score=49.53  Aligned_cols=95  Identities=15%  Similarity=0.123  Sum_probs=65.5

Q ss_pred             cccCCCEEEEEecC----------hHHHHHHHHHHhCCCEEEEEcCCCCCC--C--------------CcccccChhhhh
Q 035615           75 FKLGGMQVGIVRLG----------NIGSEVLNRLQAFGFIISYNSRRKRPS--V--------------LFPYCANVYDLA  128 (223)
Q Consensus        75 ~~l~g~~vgIiG~G----------~iG~~~a~~l~~~G~~V~~~~~~~~~~--~--------------~~~~~~~l~el~  128 (223)
                      ..+.|++|+|+|+-          .=...+++.|...|++|.+|||.....  .              ......++++.+
T Consensus       324 ~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (478)
T 2y0c_A          324 EDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQAA  403 (478)
T ss_dssp             SCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHTTTCHHHHTTEEECSSHHHHT
T ss_pred             ccCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHHHHHhhccccccccccccceeecCCHHHHH
Confidence            35889999999962          356788999999999999999975321  0              122345778889


Q ss_pred             cCCcEEEEeccCChhhhhccCHHHH-hcCCCCcEEEEcCCCcccCHH
Q 035615          129 VNSDVLVVCCALTEQTHHIINKDVM-AELGKGGMIINVGRGALIDEK  174 (223)
Q Consensus       129 ~~aDiv~~~~p~t~~t~~li~~~~l-~~mk~ga~lIN~arg~~vd~~  174 (223)
                      +.+|.|++++... +-+. ++.+.+ +.|+. .+++|+ |+- .|.+
T Consensus       404 ~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~~-~~i~D~-r~~-~~~~  445 (478)
T 2y0c_A          404 RDADALVIVTEWK-IFKS-PDFVALGRLWKT-PVIFDG-RNL-YEPE  445 (478)
T ss_dssp             TTCSEEEECSCCG-GGGS-CCHHHHHTTCSS-CEEEES-SCC-SCHH
T ss_pred             hCCCEEEEecCCh-Hhhc-cCHHHHHhhcCC-CEEEEC-CCC-CCHH
Confidence            9999999998764 3222 344433 45654 788887 543 4544

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=95.63  E-value=0.036  Score=46.15  Aligned_cols=60  Identities=12%  Similarity=0.060  Sum_probs=43.7

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcC-CCCC---C------C-----------CcccccChhhhhcCCcEEEE
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSR-RKRP---S------V-----------LFPYCANVYDLAVNSDVLVV  136 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~-~~~~---~------~-----------~~~~~~~l~el~~~aDiv~~  136 (223)
                      ||+|.|.| .|.||+.+++.|...|++|.+..| ++..   .      .           +.....+++++++.+|+|+.
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   80 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFH   80 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEEE
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEEE
Confidence            68899999 599999999999999999998877 4321   0      0           01112356678889999987


Q ss_pred             ec
Q 035615          137 CC  138 (223)
Q Consensus       137 ~~  138 (223)
                      +.
T Consensus        81 ~A   82 (322)
T 2p4h_X           81 TA   82 (322)
T ss_dssp             CC
T ss_pred             cC
Confidence            65

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=95.62  E-value=0.0092  Score=52.40  Aligned_cols=29  Identities=21%  Similarity=0.250  Sum_probs=24.1

Q ss_pred             CEEEEEecChHHHHHHHHHHhC---CCEEEEE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF---GFIISYN  108 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~---G~~V~~~  108 (223)
                      .+|||+|+|+||+.+.+.|...   +++|.++
T Consensus         3 ikVgInGfGrIGr~vlR~l~~~~~~~veIVaI   34 (380)
T 2d2i_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAI   34 (380)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEE
T ss_pred             cEEEEECcCHHHHHHHHHHhcCCCCCEEEEEE
Confidence            4899999999999999998765   3777654

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=95.61  E-value=0.01  Score=48.51  Aligned_cols=61  Identities=13%  Similarity=0.169  Sum_probs=46.3

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC--C-------cccccChhhhhcCCcEEEEeccC
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV--L-------FPYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--~-------~~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      ++|.|.|. |.||+.+++.|...|++|++.+|++....  .       .....++.++++..|+|+.+...
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   73 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVACDLADAQAVHDLVKDCDGIIHLGGV   73 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCCTTEEECCCCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccEEEccCCCHHHHHHHHcCCCEEEECCcC
Confidence            68999996 99999999999999999999998765321  1       11123456778899999887643

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=95.60  E-value=0.015  Score=48.57  Aligned_cols=61  Identities=18%  Similarity=0.182  Sum_probs=39.8

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC----CcccccChhhhhcC--CcEEEEecc
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV----LFPYCANVYDLAVN--SDVLVVCCA  139 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~el~~~--aDiv~~~~p  139 (223)
                      +++|.|.|. |.||+.+++.|...|++|++.+|+.....    +.....++.++++.  .|+|+.+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------CHHHHHHHCCSEEEECC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence            689999996 99999999999999999999987654311    11122345566664  899887764

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=95.59  E-value=0.02  Score=47.27  Aligned_cols=66  Identities=17%  Similarity=0.105  Sum_probs=46.5

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc--------ccccChhhhh-------cCCcEEEEe
Q 035615           74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLF--------PYCANVYDLA-------VNSDVLVVC  137 (223)
Q Consensus        74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~--------~~~~~l~el~-------~~aDiv~~~  137 (223)
                      ..++.||++.|.|. |.||+++|+.|...|++|+..+|+.......        ....++++++       ...|+++.+
T Consensus         9 ~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~n   88 (269)
T 3vtz_A            9 MEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFKIDVTNEEEVKEAVEKTTKKYGRIDILVNN   88 (269)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CTTSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhccCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            35688999999996 7899999999999999999998876543221        1112223333       378999887


Q ss_pred             cc
Q 035615          138 CA  139 (223)
Q Consensus       138 ~p  139 (223)
                      .-
T Consensus        89 Ag   90 (269)
T 3vtz_A           89 AG   90 (269)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=95.59  E-value=0.017  Score=47.35  Aligned_cols=65  Identities=15%  Similarity=0.059  Sum_probs=45.1

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcc-------cccChhhhh-------cCCcEEEEecc
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFP-------YCANVYDLA-------VNSDVLVVCCA  139 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~-------~~~~l~el~-------~~aDiv~~~~p  139 (223)
                      ..+.+|++.|.|. |.||+.+++.|...|++|+..+|+........       ...++++++       ...|+++.+..
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~nAg   96 (253)
T 2nm0_A           17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEGFLAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAG   96 (253)
T ss_dssp             ---CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTSHHHHHHHHHHHHHHTCSCSEEEEECS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhccceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            4588999999995 89999999999999999999888765433211       112233333       34699988764

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=95.58  E-value=0.011  Score=51.09  Aligned_cols=33  Identities=30%  Similarity=0.358  Sum_probs=28.3

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEE-EcCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISY-NSRR  111 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~-~~~~  111 (223)
                      -.+|||.|||+||+.+++.+..+|++|++ .|+.
T Consensus         7 ~~kvgInGFGRIGrlv~R~~~~~~veivainDp~   40 (346)
T 3h9e_O            7 ELTVGINGFGRIGRLVLRACMEKGVKVVAVNDPF   40 (346)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             eeEEEEECCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence            35899999999999999999999999876 5553

>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*

Probab=95.58  E-value=0.15  Score=44.31  Aligned_cols=98  Identities=13%  Similarity=0.148  Sum_probs=68.2

Q ss_pred             ccCCCEEEEEec-------ChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----------------CcccccChhhhhcCC
Q 035615           76 KLGGMQVGIVRL-------GNIGSEVLNRLQAFGFIISYNSRRKRPSV-----------------LFPYCANVYDLAVNS  131 (223)
Q Consensus        76 ~l~g~~vgIiG~-------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----------------~~~~~~~l~el~~~a  131 (223)
                      +++|++++++|.       .++.++....+..+|++|.+..+.+....                 .+....++++.++.+
T Consensus       187 dl~g~kv~~~~~~~gd~~~~~Va~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~a  266 (359)
T 3kzn_A          187 DLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAYAGA  266 (359)
T ss_dssp             CCTTCEEEEEECCCSSCCCSHHHHHHHHHHHHTTCEEEEECSSGGGCCCHHHHHHHHHHHHHHSCEEEEECCHHHHHTTC
T ss_pred             cccCCeEEEEEeecCCccccchhhhhHHHHHhccccEEEEecccccCCCHHHHHHHHHHHHhhCCCcccccCHHHHhcCC
Confidence            588999999985       36889999999999999998877532111                 122357899999999


Q ss_pred             cEEEEeccCCh--------h-------hhhccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 035615          132 DVLVVCCALTE--------Q-------THHIINKDVMAELGKGGMIINVG---RGALIDEK  174 (223)
Q Consensus       132 Div~~~~p~t~--------~-------t~~li~~~~l~~mk~ga~lIN~a---rg~~vd~~  174 (223)
                      |+|....--..        .       ....++++.++ ++++++|.-+.   ||.=|+.+
T Consensus       267 Dvvyt~r~q~~r~~~~~~~~~~~~~~~~~y~v~~~l~~-~~~~ai~MHplP~~Rg~EI~~e  326 (359)
T 3kzn_A          267 DVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMA-LTNNGVFSHCLPLRRNVKATDA  326 (359)
T ss_dssp             SEEEEECCCCGGGTTCCTTHHHHHGGGGGGSBCHHHHH-TSSSCEEECCSCCCBTTTBCHH
T ss_pred             eEEEEEEEEEeecccchhhhHHHHHHHhccChHHHHhc-CCCCCEEECCCCCCCCCCcCHH
Confidence            99987642111        0       11246777765 56789988777   67555544

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=95.57  E-value=0.016  Score=47.30  Aligned_cols=38  Identities=13%  Similarity=0.101  Sum_probs=30.1

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      .+++||++.|.|. |.||+++|+.|...|++|++.+|..
T Consensus         5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   43 (257)
T 3tl3_A            5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRG   43 (257)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred             ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCch
Confidence            4688999999995 8999999999999999999888754

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=95.55  E-value=0.035  Score=50.08  Aligned_cols=97  Identities=14%  Similarity=0.171  Sum_probs=67.7

Q ss_pred             ccCCCEEEEEec----------ChHHHHHHHHHHhCCCEEEEEcCCCCCCC---C-------------cccccChhhhhc
Q 035615           76 KLGGMQVGIVRL----------GNIGSEVLNRLQAFGFIISYNSRRKRPSV---L-------------FPYCANVYDLAV  129 (223)
Q Consensus        76 ~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---~-------------~~~~~~l~el~~  129 (223)
                      .+.|++|+|+|+          ..-...+++.|...|++|.+|||.-....   .             .....++.+.++
T Consensus       332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (481)
T 2o3j_A          332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAAR  411 (481)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHT
T ss_pred             ccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHc
Confidence            478999999995          44678899999999999999999753210   0             112356788899


Q ss_pred             CCcEEEEeccCChhhhhccCHH-HHhcCCCCcEEEEcCCCcccCHHHH
Q 035615          130 NSDVLVVCCALTEQTHHIINKD-VMAELGKGGMIINVGRGALIDEKEM  176 (223)
Q Consensus       130 ~aDiv~~~~p~t~~t~~li~~~-~l~~mk~ga~lIN~arg~~vd~~al  176 (223)
                      .+|.|++++... +-+. ++.+ ..+.|+...+++|. |+- .|.+.+
T Consensus       412 ~ad~~vi~t~~~-~f~~-~~~~~~~~~~~~~~~i~D~-r~~-~~~~~~  455 (481)
T 2o3j_A          412 GAHAIVVLTEWD-EFVE-LNYSQIHNDMQHPAAIFDG-RLI-LDQKAL  455 (481)
T ss_dssp             TCSEEEECSCCG-GGTT-SCHHHHHHHSCSSCEEEES-SSC-SCHHHH
T ss_pred             CCCEEEEcCCcH-Hhhc-cCHHHHHHhcCCCCEEEEC-CCC-CCHHHH
Confidence            999999998754 3222 3443 44567776688886 554 465543

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=95.54  E-value=0.025  Score=48.29  Aligned_cols=39  Identities=15%  Similarity=0.089  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEe-cChHHHHHHHHHHh--CCCEEEEEcCCCC
Q 035615           75 FKLGGMQVGIVR-LGNIGSEVLNRLQA--FGFIISYNSRRKR  113 (223)
Q Consensus        75 ~~l~g~~vgIiG-~G~iG~~~a~~l~~--~G~~V~~~~~~~~  113 (223)
                      .++.+++|.|.| .|.||+.+++.|..  .|++|++.+|...
T Consensus         6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~   47 (362)
T 3sxp_A            6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS   47 (362)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred             hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence            357899999997 59999999999998  8999999988654

>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}

Probab=95.54  E-value=0.051  Score=47.94  Aligned_cols=91  Identities=9%  Similarity=0.142  Sum_probs=65.7

Q ss_pred             ccCCCEEEEEec-----C---hHHHHHHHHHHhCCCEEEEEcCCCCC-CC-------------C--cccccChhhhhcCC
Q 035615           76 KLGGMQVGIVRL-----G---NIGSEVLNRLQAFGFIISYNSRRKRP-SV-------------L--FPYCANVYDLAVNS  131 (223)
Q Consensus        76 ~l~g~~vgIiG~-----G---~iG~~~a~~l~~~G~~V~~~~~~~~~-~~-------------~--~~~~~~l~el~~~a  131 (223)
                      .|.|++|+|+|-     |   ++.++.+..+..+|++|.+..|..-. ..             +  +....+++|.++.+
T Consensus       188 ~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~~~~d~~eav~~a  267 (399)
T 3q98_A          188 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEAFKDA  267 (399)
T ss_dssp             GGTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTC
T ss_pred             ccCCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhCCC
Confidence            478999999973     4   78899999999999999988775322 11             1  12357899999999


Q ss_pred             cEEEEeccCC--h-------------------h----------hhhccCHHHHhcCC-CCcEEEEcC
Q 035615          132 DVLVVCCALT--E-------------------Q----------THHIINKDVMAELG-KGGMIINVG  166 (223)
Q Consensus       132 Div~~~~p~t--~-------------------~----------t~~li~~~~l~~mk-~ga~lIN~a  166 (223)
                      |+|..-+=..  .                   +          ....+|.+.++..+ ++++|.-+.
T Consensus       268 DvVytd~W~Smg~~~er~~~~~~~~~~~~~~~e~~~~~r~~~~~~yqVn~elm~~a~~~daifMHcL  334 (399)
T 3q98_A          268 DIVYPKSWAPYKVMEERTELLRANDHEGLKALEKQCLAQNAQHKDWHCTEEMMELTRDGEALYMHCL  334 (399)
T ss_dssp             SEEEECCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTTCCBCHHHHHTSGGGCCEECCCS
T ss_pred             CEEEecCccccchhhhhhhhccccchhhhhhhhhhhhHHHHHccCcEECHHHHhhcCCCCcEEECCC
Confidence            9998754000  0                   0          12457899999887 489988776

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=95.54  E-value=0.02  Score=48.73  Aligned_cols=64  Identities=14%  Similarity=0.039  Sum_probs=46.7

Q ss_pred             ccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------Ccc-------cccChhhhhcC--CcEEE
Q 035615           76 KLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------LFP-------YCANVYDLAVN--SDVLV  135 (223)
Q Consensus        76 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~-------~~~~l~el~~~--aDiv~  135 (223)
                      .+.+++|.|.| .|.||+.+++.|...|++|++.+|+.....          ...       ...++.++++.  .|+|+
T Consensus         6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   85 (357)
T 1rkx_A            6 FWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVF   85 (357)
T ss_dssp             HHTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             hhCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEE
Confidence            36789999999 599999999999999999999988764321          111       11234455654  79988


Q ss_pred             Eecc
Q 035615          136 VCCA  139 (223)
Q Consensus       136 ~~~p  139 (223)
                      .+..
T Consensus        86 h~A~   89 (357)
T 1rkx_A           86 HMAA   89 (357)
T ss_dssp             ECCS
T ss_pred             ECCC
Confidence            7764

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.53  E-value=0.078  Score=44.42  Aligned_cols=105  Identities=12%  Similarity=0.072  Sum_probs=70.0

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC--CCCcccccChhhhhcCCcEEEEeccCChh----------h
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP--SVLFPYCANVYDLAVNSDVLVVCCALTEQ----------T  144 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~--~~~~~~~~~l~el~~~aDiv~~~~p~t~~----------t  144 (223)
                      +.|++|.|+|.-..-...++.|...|++|.+...+...  ..+.....++.+.++++|+|++-.|....          .
T Consensus         3 ~~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~~   82 (293)
T 3d4o_A            3 LTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSNE   82 (293)
T ss_dssp             CTTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCSC
T ss_pred             ccCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeecccccC
Confidence            56899999999999999999999999999876432211  11223345667788899999864332110          1


Q ss_pred             hhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          145 HHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      ..-++++.++.+++..++. +   + +|..++.+++.+..|.
T Consensus        83 ~~~~~~~~l~~~~~l~~i~-~---G-~d~id~~~~~~~~gi~  119 (293)
T 3d4o_A           83 SIVLTEEMIEKTPNHCVVY-S---G-ISNTYLNQCMKKTNRT  119 (293)
T ss_dssp             CCBCCHHHHHTSCTTCEEE-E---S-SCCHHHHHHHHHHTCE
T ss_pred             CccchHHHHHhCCCCCEEE-e---c-CCCHHHHHHHHHcCCe
Confidence            1236788999998877765 2   2 3556665566665565

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.53  E-value=0.0072  Score=51.42  Aligned_cols=84  Identities=18%  Similarity=0.112  Sum_probs=58.5

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc---c---cChhhhh-----cCCcEEEEeccC
Q 035615           78 GGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY---C---ANVYDLA-----VNSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~---~---~~l~el~-----~~aDiv~~~~p~  140 (223)
                      .|++|.|.|. |.||+.+++.++..|++|++.+++.+..+     +...   .   .++.+.+     ...|+++.+...
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~  224 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGG  224 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCCh
Confidence            4899999997 99999999999999999999887643211     1111   1   2333322     247888887752


Q ss_pred             ChhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          141 TEQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       141 t~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                       + +    -...++.++++..++.++-
T Consensus       225 -~-~----~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          225 -E-F----LNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             -H-H----HHHHHTTEEEEEEEEECCC
T ss_pred             -H-H----HHHHHHHHhcCCEEEEEec
Confidence             1 1    2556778889888888874

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.53  E-value=0.0082  Score=51.59  Aligned_cols=84  Identities=17%  Similarity=0.122  Sum_probs=55.4

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----Cccc-----ccChhh----hhc--CCcEEEEeccC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----LFPY-----CANVYD----LAV--NSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~-----~~~l~e----l~~--~aDiv~~~~p~  140 (223)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.++++++.+     ++..     ..++.+    +..  ..|+|+-++..
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~  245 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGD  245 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            48899999999999999999999999 7999988764321     2211     112222    221  47999887763


Q ss_pred             ChhhhhccCHHHHhcCCCCcEEEEcC
Q 035615          141 TEQTHHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       141 t~~t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      .+..     ...++.++++..++.++
T Consensus       246 ~~~~-----~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          246 VHTF-----AQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             TTHH-----HHHHHHEEEEEEEEECC
T ss_pred             hHHH-----HHHHHHHhcCCEEEEec
Confidence            2211     34555666666666654

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=95.53  E-value=0.0076  Score=51.54  Aligned_cols=84  Identities=17%  Similarity=0.235  Sum_probs=58.9

Q ss_pred             CCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc-----ccChhh----hh--cCCcEEEEeccC
Q 035615           78 GGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY-----CANVYD----LA--VNSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~-----~~~l~e----l~--~~aDiv~~~~p~  140 (223)
                      .|++|.|+|.| .||...++.++..|++|++.+++.++.+     ++..     ..++.+    +.  ...|+++.++..
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  223 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGG  223 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCC
Confidence            48899999997 9999999999999999999988766432     2111     112222    21  257999887752


Q ss_pred             ChhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          141 TEQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       141 t~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                       +.+     .+.+..++++..++.++-
T Consensus       224 -~~~-----~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          224 -PDG-----NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             -HHH-----HHHHHTEEEEEEEEECCC
T ss_pred             -hhH-----HHHHHHhcCCCEEEEEee
Confidence             222     234577899999999874

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=95.51  E-value=0.046  Score=45.99  Aligned_cols=60  Identities=12%  Similarity=0.073  Sum_probs=44.5

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC------------Cc-------ccccChhhhhcCCcEEEEec
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV------------LF-------PYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------------~~-------~~~~~l~el~~~aDiv~~~~  138 (223)
                      +|+|.|.| .|-||+.+++.|...|++|.+..|+.....            ..       ....+++++++.+|+|+.+.
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   88 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVA   88 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEES
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEeC
Confidence            78999999 699999999999999999988766543210            11       11234667888899887654

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=95.49  E-value=0.035  Score=45.61  Aligned_cols=64  Identities=17%  Similarity=0.045  Sum_probs=46.2

Q ss_pred             ccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc-------ccccChhhhhc-------CCcEEEEecc
Q 035615           76 KLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF-------PYCANVYDLAV-------NSDVLVVCCA  139 (223)
Q Consensus        76 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~-------~~~~~l~el~~-------~aDiv~~~~p  139 (223)
                      ++.||++.|.| .|.||+.+++.|...|++|++.+|+.......       ....+++++++       ..|+|+.+..
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag   83 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAG   83 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCCSCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcccCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            47899999999 58999999999999999999988876432111       11122333333       6899988764

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.49  E-value=0.021  Score=44.72  Aligned_cols=62  Identities=16%  Similarity=0.116  Sum_probs=44.9

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHHhCCC--EEEEEcCCCCCCC-Ccc-------cccChhhhhcCCcEEEEeccCC
Q 035615           78 GGMQVGIVR-LGNIGSEVLNRLQAFGF--IISYNSRRKRPSV-LFP-------YCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        78 ~g~~vgIiG-~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-~~~-------~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      .+++|.|.| .|.||+.+++.|...|.  +|++.+|++.... ...       ...++.+++  .|+|+.+....
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~--~d~vi~~a~~~   76 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGS--IDTAFCCLGTT   76 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSC--CSEEEECCCCC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcccCCCceEEeccccCHHHHHHhh--hcEEEECeeec
Confidence            478999999 79999999999999998  9999988765411 111       112333344  89998887654

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=95.47  E-value=0.089  Score=42.74  Aligned_cols=39  Identities=13%  Similarity=0.065  Sum_probs=34.5

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      +++||++.|.|. |.||+++|+.|...|++|++.+|+...
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   43 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPA   43 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            478999999995 899999999999999999999887654

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=95.47  E-value=0.023  Score=47.44  Aligned_cols=62  Identities=19%  Similarity=0.130  Sum_probs=46.9

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhc--CCcEEEEeccCC
Q 035615           78 GGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        78 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~--~aDiv~~~~p~t  141 (223)
                      .+++|.|.| .|.||+.+++.|...|++|++.+++...  +.....++.++++  ..|+|+.+....
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~--D~~d~~~~~~~~~~~~~d~vih~a~~~   66 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDEL--NLLDSRAVHDFFASERIDQVYLAAAKV   66 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTC--CTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccC--CccCHHHHHHHHHhcCCCEEEEcCeec
Confidence            367999999 5999999999999999999988775421  2222345667787  899998776543

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=95.44  E-value=0.031  Score=45.55  Aligned_cols=39  Identities=13%  Similarity=0.082  Sum_probs=34.6

Q ss_pred             ccccCCCEEEEEec---ChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           74 GFKLGGMQVGIVRL---GNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        74 ~~~l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      ...+.+|++.|.|.   |.||+.+|+.|...|++|++.+|+.
T Consensus         9 ~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~   50 (271)
T 3ek2_A            9 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGD   50 (271)
T ss_dssp             CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecch
Confidence            45689999999995   5899999999999999999888763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	223
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	1e-31
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	2e-29
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	1e-27
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	7e-27
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	1e-25
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	5e-16
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	4e-15
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	4e-14
d1pjqa1	113	c.2.1.11 (A:1-113) Siroheme synthase CysG, domain	4e-04
d1vpda2	161	c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase	0.001
d1j5pa4	132	c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein	0.003

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score =  111 bits (279), Expect = 1e-31
 Identities = 48/182 (26%), Positives = 75/182 (41%), Gaps = 6/182 (3%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAK-TGDYPLGFKLGGMQVGIVRLGNIGSEVLN 96
            A++A+ LL+   RR   G   +R   W        +G KL    +GI   G+IG  +  
Sbjct: 5   TAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAK 64

Query: 97  RLQAFGFIISYNSRRKRPSVLFPYCANVY-----DLAVNSDVLVVCCALTEQTHHIINKD 151
           R Q F   I Y    +  S         +      L   S    +    T +T +  NK 
Sbjct: 65  RAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKA 124

Query: 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVL 211
            +  L +G +++N  RG L+D + ++  L  G +   G DVF  +PN+ +    L N  L
Sbjct: 125 TIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFL 184

Query: 212 LP 213
            P
Sbjct: 185 FP 186

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score =  106 bits (264), Expect = 2e-29
 Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 6/182 (3%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+  + +++  +R   P + + R G W         + L  M VG V  G IG  VL R
Sbjct: 3   VAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRR 62

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVY-----DLAVNSDVLVVCCALTEQTHHIINKDV 152
           L  F   + Y  R + P  +       +     D+    DV+ + C L  +T H+IN + 
Sbjct: 63  LAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDET 122

Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR-LDNIVL 211
           +    +G  I+N  RG L D   + + L  G + G   DV+   P     P R +    +
Sbjct: 123 LKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM 182

Query: 212 LP 213
            P
Sbjct: 183 TP 184

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  101 bits (253), Expect = 1e-27
 Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 5/179 (2%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
            A+ A+ LL+   R+I   +  +R   W ++          G  VG+V LG IG  V  R
Sbjct: 5   AAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIF--GKTVGVVGLGRIGQLVAQR 62

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVY---DLAVNSDVLVVCCALTEQTHHIINKDVMA 154
           + AFG  +        P+        +    DL   +D + V    T +T  +I+K+ +A
Sbjct: 63  IAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALA 122

Query: 155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
           +   G +I+N  RG L+DE  +   +  G +   GLDVF  +P        L  +V+ P
Sbjct: 123 KTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTP 181

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 99.7 bits (247), Expect = 7e-27
 Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 6/181 (3%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+L IG L+  LR +   N     G+  K        +   + +           +L  
Sbjct: 5   VAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAE 64

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
                ++  Y+   K P        ++ DL   SDV+ +       T +++    ++ + 
Sbjct: 65  -SLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMK 123

Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEP-----LRLDNIVLL 212
            G ++IN  RG ++D   +   L    + G  +DVF  +P    +P        DN++L 
Sbjct: 124 PGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLT 183

Query: 213 P 213
           P
Sbjct: 184 P 184

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 96.7 bits (239), Expect = 1e-25
 Identities = 51/187 (27%), Positives = 92/187 (49%), Gaps = 11/187 (5%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGD-----YPLGFKLGGMQVGIVRLGNIGS 92
            AD  +  +++  RR +  +  +R G   ++ +          ++ G  +GI+ LG +G 
Sbjct: 3   TADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQ 62

Query: 93  EVLNRLQAFGFIISYNSRR----KRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHII 148
            V  R +AFGF + +           ++     + + DL  +SD + + C L E  HH+I
Sbjct: 63  AVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLI 122

Query: 149 NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKE-PLR-L 206
           N   + ++ +G  ++N  RG L+DEK + Q L +G I G  LDV E++P    + PL+  
Sbjct: 123 NDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDA 182

Query: 207 DNIVLLP 213
            N++  P
Sbjct: 183 PNLICTP 189

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 71.0 bits (172), Expect = 5e-16
 Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 6/178 (3%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           VA+ A+ LL+   +RI      ++ G + +  + PL     G +V ++ LG IG+ V   
Sbjct: 4   VAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQ---GEKVAVLGLGEIGTRVGKI 60

Query: 98  LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
           L A G  +   SR  +        +    L      +       + T  ++    +A + 
Sbjct: 61  LAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPL-NKHTRGLVKYQHLALMA 119

Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEP--LRLDNIVLLP 213
           +  + +NVGR  ++D   +L+ L +        DV+    +  K+     L N+V  P
Sbjct: 120 EDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATP 177

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 69.1 bits (167), Expect = 4e-15
 Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 16/191 (8%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           +A+ A+   +  LR +      ++AG + K G + +G +LG   VG++  G+IG   +  
Sbjct: 5   IAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF-IGKELGQQTVGVMGTGHIGQVAIKL 63

Query: 98  LQAFGFIISYNSRRKRPSV-LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
            + FG  +                  ++ DL   SDV+ +     EQ  HIIN+     +
Sbjct: 64  FKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLM 123

Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEP------------- 203
             G ++IN  R  LID + ML  L  G + GVG+D +E +                    
Sbjct: 124 KPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDE 183

Query: 204 -LRLDNIVLLP 213
            L + N+VL P
Sbjct: 184 LLGMPNVVLSP 194

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 66.4 bits (160), Expect = 4e-14
 Identities = 39/185 (21%), Positives = 77/185 (41%), Gaps = 4/185 (2%)

Query: 38  VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
           +A+ A       LR+    +  V            +G ++    VG+V  G+IG   +  
Sbjct: 4   IAEHAAIQAARILRQDKAMDEKVARHDLRWAP--TIGREVRDQVVGVVGTGHIGQVFMQI 61

Query: 98  LQAFGFIISYNSRRKRPSVLFP--YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE 155
           ++ FG  +      + P +     Y  ++ DL   +DV+ +         H+IN + +A+
Sbjct: 62  MEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAK 121

Query: 156 LGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQ 215
           + +  +I+NV RG L+D   +++ L  G I G  +DV+E +  +  E             
Sbjct: 122 MKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLA 181

Query: 216 NALTH 220
           + +  
Sbjct: 182 DLIAR 186

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

 Score = 36.6 bits (84), Expect = 4e-04
 Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 15/118 (12%)

Query: 71  YPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVL-------FPYCAN 123
            P+  +L      IV  G++       L   G  ++ N+    P                
Sbjct: 4   LPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEG 63

Query: 124 VYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLV 181
            +D  +     +   A        +N+ V        +  NV     +D  +   F++
Sbjct: 64  PFDETLLDSCWLAIAA---TDDDTVNQRVSDAAESRRIFCNV-----VDAPKAASFIM 113

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 7/134 (5%)

Query: 80  MQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLFPYCANVY----DLAVNSDVL 134
           M+VG + LG +G  +   L   G+ ++  +   +  + +    A        +A   DV+
Sbjct: 1   MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVI 60

Query: 135 VVCCALTEQTHHII--NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV 192
           +     +     +      ++     G ++I++   A +  +E+   L    +  +   V
Sbjct: 61  ITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPV 120

Query: 193 FENDPNVPKEPLRL 206
              +P      L +
Sbjct: 121 SGGEPKAIDGTLSV 134

>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643 {Thermotoga maritima [TaxId: 2336]} Length = 132

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1643
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 80  MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCA 139
           M V I+ +GNIG +++               +       P    + +  V SDV  V   
Sbjct: 3   MTVLIIGMGNIGKKLVELGNFEKIYAYDRISKD-----IPGVVRLDEFQVPSDVSTVVEC 57

Query: 140 LTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEML 177
            + +     +  ++ +     +II+    A    +E  
Sbjct: 58  ASPEAVKEYSLQIL-KNPVNYIIISTSAFADEVFRERF 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	223
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.69
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.65
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.63
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.58
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.56
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.52
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.5
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.46
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.37
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.34
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.33
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.32
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.29
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.21
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.19
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.15
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.1
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.09
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.05
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.03
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.0
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.89
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.84
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.82
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.72
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.69
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.67
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.66
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.65
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.56
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.55
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.46
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.44
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.42
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.36
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.36
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	98.33
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.3
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.29
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.27
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.26
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	98.2
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.18
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.18
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	98.16
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	98.07
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	98.02
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.98
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.92
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.92
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.89
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.88
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.85
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.84
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	97.82
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.79
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.75
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.72
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.69
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.65
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.65
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.64
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.63
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.62
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.57
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.57
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.56
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.55
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	97.54
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	97.51
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.5
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	97.49
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	97.46
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.46
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.42
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.41
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.41
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	97.41
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.39
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.39
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	97.39
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.38
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	97.35
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.34
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.32
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.32
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.29
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	97.28
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	97.27
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.16
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.15
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	97.15
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.15
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	97.13
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.1
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	96.99
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.97
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	96.97
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.87
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.85
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.84
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.84
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.81
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	96.8
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	96.76
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.75
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	96.75
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.75
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.67
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.66
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	96.65
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	96.63
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.59
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.58
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	96.55
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.55
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.54
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	96.54
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	96.52
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.5
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	96.48
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	96.42
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.34
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.34
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.33
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.31
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	96.29
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	96.22
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	96.2
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.16
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.14
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.11
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.11
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	96.11
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	96.09
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	96.07
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.07
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.07
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	96.06
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.05
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.05
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	96.04
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	96.03
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.02
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.01
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	95.99
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	95.96
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	95.92
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.91
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.9
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	95.88
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.88
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.87
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.86
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	95.85
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	95.85
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	95.84
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.8
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.78
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	95.75
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	95.75
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.74
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	95.74
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.74
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.74
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.73
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.72
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	95.71
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.7
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	95.68
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.66
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.63
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.63
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.63
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	95.63
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	95.62
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.61
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.61
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.6
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.58
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	95.51
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	95.5
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	95.49
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.44
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	95.42
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.38
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.36
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	95.35
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	95.3
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.25
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.19
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.16
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.16
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	95.11
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	95.11
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.11
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	95.09
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.06
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	95.03
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	95.01
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.99
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	94.98
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	94.97
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.93
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	94.91
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	94.89
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	94.89
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	94.87
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	94.83
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.81
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	94.77
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	94.69
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	94.68
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.68
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.66
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	94.58
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	94.55
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	94.52
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	94.51
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	94.48
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	94.46
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	94.41
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	94.4
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	94.37
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	94.33
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	94.26
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.24
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.17
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.17
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.02
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	93.99
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	93.97
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	93.91
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.9
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	93.86
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	93.86
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	93.73
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	93.61
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.55
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	93.46
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	93.45
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.21
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.16
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	93.15
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	93.15
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.14
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	93.13
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	92.89
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.82
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	92.81
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.72
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.53
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	92.45
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.43
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	92.36
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	92.3
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	92.26
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	92.24
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	92.23
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	92.21
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	92.18
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	92.14
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	91.96
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.9
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	91.82
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	91.8
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	91.79
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	91.74
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	91.74
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	91.7
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	91.6
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	91.23
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	91.2
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	91.2
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	91.06
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	91.06
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	91.02
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	90.96
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.95
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	90.79
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	90.77
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	90.76
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	90.64
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.54
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	90.54
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	90.5
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	90.5
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.08
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	90.03
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	90.02
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	89.92
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	89.85
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	89.63
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	89.62
d1js1x2	161	Transcarbamylase-like protein {Bacteroides fragili	89.22
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	89.21
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	89.18
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	89.16
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	89.07
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	89.04
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	88.99
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	88.93
d1x74a1	359	2-methylacyl-CoA racemase Mcr {Mycobacterium tuber	88.87
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.85
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	88.85
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	88.73
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	88.62
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	88.59
d1xk7a1	402	Crotonobetainyl-CoA:carnitine CoA-transferase, Cai	88.22
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	88.2
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	88.19
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	88.11
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.03
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.72
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	87.68
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	87.42
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	87.23
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	87.13
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	87.04
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	87.04
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	86.98
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	86.66
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	86.29
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	86.27
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	86.27
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	86.08
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	86.02
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	85.9
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	85.79
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	85.41
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	84.65
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.46
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	84.34
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	84.15
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.61
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	83.6
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	83.55
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	83.5
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	83.35
d2vjma1	427	Formyl-CoA transferase {Oxalobacter formigenes [Ta	83.33
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	83.12
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	82.76
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	82.12
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	81.33
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	80.53
d2c42a4	253	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I	80.34
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	80.33
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	80.15

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5e-57  Score=362.80  Aligned_cols=181  Identities=28%  Similarity=0.449  Sum_probs=168.1

Q ss_pred             CcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           34 DLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        34 ~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      |+.+||||+++++|++.|++..+++.++++.|.+..  ..+.++.|+++||+|+|+||+.+|+++++|||+|++||++..
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~--~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~   78 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSS--FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVS   78 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGG--CCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccc--cccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCC
Confidence            678999999999999999999999999999997532  257789999999999999999999999999999999998875


Q ss_pred             CCC---CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEe
Q 035615          114 PSV---LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGL  190 (223)
Q Consensus       114 ~~~---~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~l  190 (223)
                      +..   ......+++|++++||+|++|+|+|++|+++||++.|++||++++|||+|||++||++||+++|++|+|.||+|
T Consensus        79 ~~~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~l  158 (184)
T d1ygya1          79 PARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGL  158 (184)
T ss_dssp             HHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEE
T ss_pred             hhHHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEE
Confidence            432   12245789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCCCCCCCceEEccCCC
Q 035615          191 DVFENDPNVPKEPLRLDNIVLLPCQN  216 (223)
Q Consensus       191 DV~~~EP~~~~~l~~~~nv~~TPH~a  216 (223)
                      |||++||++++|||++|||++|||||
T Consensus       159 DV~~~EP~~~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         159 DVFATEPCTDSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             SSCSSSSCSCCGGGGCTTEEECSSCS
T ss_pred             eCCCCCCCCCchHhcCCCEEECCCCC
Confidence            99999999878999999999999996

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=9.6e-56  Score=357.08  Aligned_cols=184  Identities=26%  Similarity=0.413  Sum_probs=168.8

Q ss_pred             cchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCC-CCCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           35 LPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGD-YPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        35 ~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~-~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      +.+|||+++++||++.|++.++++.+++|.|..... ...+.+++|+|+||||+|+||+.+|+++++|||+|.+||+...
T Consensus         2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1           2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence            468999999999999999999999999999974322 2357899999999999999999999999999999999998765


Q ss_pred             CCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEE
Q 035615          114 PSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGV  188 (223)
Q Consensus       114 ~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a  188 (223)
                      ...     ......++++++++||+|++|+|+|++|+++||++.|+.||+|++|||+|||++||++||+++|++|++.+|
T Consensus        82 ~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a  161 (191)
T d1gdha1          82 SSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYA  161 (191)
T ss_dssp             CHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEE
T ss_pred             ccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEE
Confidence            432     234467899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCCCCCCCceEEccCCCCC
Q 035615          189 GLDVFENDPNVPKEPLRLDNIVLLPCQNAL  218 (223)
Q Consensus       189 ~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~  218 (223)
                      ++|||++||.+++|||++|||++|||+|++
T Consensus       162 ~lDV~~~EP~~~~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         162 GFDVFAGEPNINEGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             EESCCTTTTSCCTTGGGCTTEEECSSCTTC
T ss_pred             EEECCCCCCCCCchHHcCCCEEECCccccC
Confidence            999999999777799999999999999974

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=5e-55  Score=353.33  Aligned_cols=182  Identities=27%  Similarity=0.430  Sum_probs=167.0

Q ss_pred             chHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCC-----CCCCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcC
Q 035615           36 PIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTG-----DYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSR  110 (223)
Q Consensus        36 ~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~-----~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~  110 (223)
                      ++|||++++++|++.|++..+++.+++|.|.+..     ....+.+|+|+||||||+|+||+.+|+++++|||+|++||+
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~   80 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP   80 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence            5899999999999999999999999999997532     12357889999999999999999999999999999999999


Q ss_pred             CCCCCC----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          111 RKRPSV----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       111 ~~~~~~----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      ......    +.....++++++++||+|++|+|+|++|+++||++.|++||++++|||+|||++||++||+++|++|++.
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~  160 (193)
T d1mx3a1          81 YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR  160 (193)
T ss_dssp             TSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred             cccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCce
Confidence            866432    3445678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCCCCCCC--CCCCCCCceEEccCCCC
Q 035615          187 GVGLDVFENDPNVP--KEPLRLDNIVLLPCQNA  217 (223)
Q Consensus       187 ~a~lDV~~~EP~~~--~~l~~~~nv~~TPH~a~  217 (223)
                      +|++|||++||++.  +|||++|||++|||+|+
T Consensus       161 ~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         161 GAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             EEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             EEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence            99999999999763  48999999999999986

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=1.8e-55  Score=357.79  Aligned_cols=183  Identities=28%  Similarity=0.402  Sum_probs=167.5

Q ss_pred             cchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           35 LPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        35 ~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      +++||||+++++|++.|++..+++.+++|.|.+...+ .+++|.|+||||||+|+||+.+|+++++|||+|++||++...
T Consensus         2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~~-~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   80 (199)
T d1dxya1           2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF-IGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMK   80 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCC-CCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccCc-ccccccceeeeeeecccccccccccccccceeeeccCCccch
Confidence            5789999999999999999999999999999754433 578999999999999999999999999999999999997654


Q ss_pred             CC-CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCC
Q 035615          115 SV-LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVF  193 (223)
Q Consensus       115 ~~-~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~  193 (223)
                      .. ......++++++++||+|++|+|+|++|+++||++.|++||++++|||+|||++||++||+++|++|+|.||++|||
T Consensus        81 ~~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV~  160 (199)
T d1dxya1          81 GDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTY  160 (199)
T ss_dssp             SCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSC
T ss_pred             hhhcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEecccc
Confidence            43 23346789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC----------C----CCCCCCCceEEccCCCCC
Q 035615          194 ENDPNV----------P----KEPLRLDNIVLLPCQNAL  218 (223)
Q Consensus       194 ~~EP~~----------~----~~l~~~~nv~~TPH~a~~  218 (223)
                      ++||++          .    ++||.+|||++|||+|||
T Consensus       161 ~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         161 EYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             TTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             CCCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            999962          1    268899999999999996

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=6.9e-55  Score=351.44  Aligned_cols=181  Identities=26%  Similarity=0.443  Sum_probs=166.9

Q ss_pred             hHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC
Q 035615           37 IVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV  116 (223)
Q Consensus        37 ~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~  116 (223)
                      +||||+++++|++.|++..+++.+++|.|........+++|+|+++||||+|+||+.+|+++++|||+|.+|++......
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~   81 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES   81 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHH
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeecccccc
Confidence            79999999999999999999999999999743222346789999999999999999999999999999999998765432


Q ss_pred             -----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee
Q 035615          117 -----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD  191 (223)
Q Consensus       117 -----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD  191 (223)
                           +.....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|++.+|++|
T Consensus        82 ~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~lD  161 (188)
T d2naca1          82 VEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGD  161 (188)
T ss_dssp             HHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEES
T ss_pred             ccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEEe
Confidence                 344568999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC-CCCCCCceEEccCCCC
Q 035615          192 VFENDPNVPK-EPLRLDNIVLLPCQNA  217 (223)
Q Consensus       192 V~~~EP~~~~-~l~~~~nv~~TPH~a~  217 (223)
                      ||++||++++ |||.+||+++|||+||
T Consensus       162 V~~~EP~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         162 VWFPQPAPKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             CCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred             CCCCCCCCCCChHHcCCCeEEccccCc
Confidence            9999998865 8999999999999997

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.2e-54  Score=345.86  Aligned_cols=182  Identities=23%  Similarity=0.387  Sum_probs=159.5

Q ss_pred             CcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           34 DLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        34 ~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      |+++||||+++++|++.|+++.++..++++.|.+..  ..+.+|.|++|||||+|+||+.+|+++++|||+|++||+...
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~--~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLA--AGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccc--cccccccceEEEEeecccchhhhhhhcccccceEeecccccc
Confidence            789999999999999999999999999999998542  246789999999999999999999999999999999998765


Q ss_pred             CCC-CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615          114 PSV-LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV  192 (223)
Q Consensus       114 ~~~-~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV  192 (223)
                      ... ......+++|++++||+|++|+|+|++|+++||++.|+.||++++|||+|||++||++||+++|+++++.+|++||
T Consensus        79 ~~~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV  158 (188)
T d1sc6a1          79 LPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDV  158 (188)
T ss_dssp             CCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC
T ss_pred             chhhhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEec
Confidence            443 3445678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC-----CCCCCCCceEEccCCCC
Q 035615          193 FENDPNVP-----KEPLRLDNIVLLPCQNA  217 (223)
Q Consensus       193 ~~~EP~~~-----~~l~~~~nv~~TPH~a~  217 (223)
                      |++||...     +|||++|||++|||+||
T Consensus       159 ~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         159 FPTEPATNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             ---------CTTTGGGTTCTTEEEECCCSC
T ss_pred             CCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence            99999742     37999999999999997

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=2.8e-53  Score=339.86  Aligned_cols=179  Identities=21%  Similarity=0.302  Sum_probs=163.7

Q ss_pred             cchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           35 LPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        35 ~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      +++||||+++++|++.|++..+++.++++.|.+...   ..+|+|+||||||+|+||+.+|+++++|||+|++|||++..
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~~---~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~   77 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE---IPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE   77 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSC---CCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCC---CCcccCceEEEeccccccccceeeeeccccccccccccccc
Confidence            578999999999999999999999999999975432   34699999999999999999999999999999999998765


Q ss_pred             CCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615          115 SVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE  194 (223)
Q Consensus       115 ~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~  194 (223)
                      .. .....+++|++++||+|++|+|+|++|+++|+++.|+.||++++|||+|||++||+++|+++|+++++.+|++|||+
T Consensus        78 ~~-~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~~  156 (181)
T d1qp8a1          78 GP-WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWW  156 (181)
T ss_dssp             SS-SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCT
T ss_pred             cc-eeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEecCC
Confidence            43 23457899999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCC-CCC-CCCCCCceEEccCCCC
Q 035615          195 NDPN-VPK-EPLRLDNIVLLPCQNA  217 (223)
Q Consensus       195 ~EP~-~~~-~l~~~~nv~~TPH~a~  217 (223)
                      .||+ +.+ ||+++|||++|||+||
T Consensus       157 ~e~p~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         157 GRNDFAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             TTTCCGGGHHHHTSTTEEECCSCSS
T ss_pred             CCCCCCCCChHHcCCCEEeccccCc
Confidence            7654 334 8999999999999997

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=5.2e-54  Score=348.26  Aligned_cols=181  Identities=22%  Similarity=0.304  Sum_probs=163.8

Q ss_pred             cchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           35 LPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        35 ~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      +++||||+++++|++.|++..+++.++++.|.+..  ..+++|.|+||||||+|+||+.+|+++++|||+|++||+....
T Consensus         1 p~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~--~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~   78 (197)
T d1j4aa1           1 PNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAP--TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNP   78 (197)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTT--CCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             CCHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCC--CcCccccCCeEEEecccccchhHHHhHhhhcccccccCccccc
Confidence            36899999999999999999999999999886543  2578999999999999999999999999999999999987654


Q ss_pred             CC--CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615          115 SV--LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV  192 (223)
Q Consensus       115 ~~--~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV  192 (223)
                      ..  ......++++++++||+|++|+|+|++|+++|+++.|+.||++++|||+|||++||++||+++|++|++.+|++||
T Consensus        79 ~~~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV  158 (197)
T d1j4aa1          79 ELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDV  158 (197)
T ss_dssp             HHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESC
T ss_pred             ccccceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeec
Confidence            32  2334578999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC--------------CCCCCCCceEEccCCCC
Q 035615          193 FENDPNVP--------------KEPLRLDNIVLLPCQNA  217 (223)
Q Consensus       193 ~~~EP~~~--------------~~l~~~~nv~~TPH~a~  217 (223)
                      |++||...              +|||.+|||++|||+|+
T Consensus       159 ~~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         159 YEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             CTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             cccCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            99997421              15889999999999985

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.1e-17  Score=129.27  Aligned_cols=115  Identities=14%  Similarity=0.153  Sum_probs=92.8

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----CcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      ..|.||+++|+|||.||+.+|+++++||++|+++++.|....    ......++++++..+|+++++.    .++++|+.
T Consensus        20 ~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvtaT----Gn~~vI~~   95 (163)
T d1li4a1          20 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTT----GCIDIILG   95 (163)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECS----SCSCSBCH
T ss_pred             ceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEecC----CCccchhH
Confidence            458999999999999999999999999999999999875432    2223568999999999998765    36889999


Q ss_pred             HHHhcCCCCcEEEEcC-CCcccCHHHHHHHHHcCCceEEEeeCC
Q 035615          151 DVMAELGKGGMIINVG-RGALIDEKEMLQFLVQGDINGVGLDVF  193 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~a-rg~~vd~~al~~aL~~~~i~~a~lDV~  193 (223)
                      +.|++||+|+++.|++ +..-||.++|.+...+.+.....+|.|
T Consensus        96 eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y  139 (163)
T d1li4a1          96 RHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRY  139 (163)
T ss_dssp             HHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEE
Confidence            9999999999999987 566699999987544433333344443

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.65  E-value=2.9e-19  Score=132.45  Aligned_cols=70  Identities=7%  Similarity=0.029  Sum_probs=64.2

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG   78 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~   78 (223)
                      ||+||||++.++|+||+|.+.++ +++    ++|+|+.+||||+++++|++.|+                          
T Consensus        48 ~~~Lk~i~~~~aG~D~i~~~~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r~--------------------------  100 (121)
T d1qp8a2          48 MPRLKFIQVVTAGLDHLPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVRN--------------------------  100 (121)
T ss_dssp             CTTCCCEEBSSSCCTTSCCTTSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHHH--------------------------
T ss_pred             CCCceEEEecccCcCCCCHHHhc-cCeEEEECCCCChHHHHHHHHHHHHHhcCC--------------------------
Confidence            89999999999999999999985 466    69999999999999999999873                          


Q ss_pred             CCEEEEEecChHHHHHHHHHHhCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFG  102 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G  102 (223)
                         ++|+|+|+||+.+|+++++||
T Consensus       101 ---l~i~G~G~iG~~iA~r~~a~G  121 (121)
T d1qp8a2         101 ---LITYATGGRPRNIAKREDYIG  121 (121)
T ss_dssp             ---HHHHHTTSCCSCBCCGGGTC-
T ss_pred             ---EEEEcCCHHHHHHHHHHHhcC
Confidence               589999999999999999997

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.63  E-value=1.8e-16  Score=122.45  Aligned_cols=111  Identities=17%  Similarity=0.278  Sum_probs=96.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccC--HHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN--KDV  152 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~--~~~  152 (223)
                      ++|||||+|.||+.+|++|...|++|++|||+++..+     +.....+..|++++||+|++|+|..++.+.++.  ...
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            5799999999999999999999999999999876532     344567899999999999999998888888762  357


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615          153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV  192 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV  192 (223)
                      +..+++|.++||++....-....+.+.+++..+.  ++|.
T Consensus        81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda  118 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE--MLDA  118 (161)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--eecc
Confidence            8889999999999999999999999999998887  6764

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=1.4e-16  Score=119.22  Aligned_cols=64  Identities=11%  Similarity=-0.027  Sum_probs=59.4

Q ss_pred             CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCC
Q 035615            2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLW   65 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w   65 (223)
                      .+|+||+|+++++||||||+++++++||    +||+++.+|||+++++||++.|++..+++.+|+|.|
T Consensus        61 ~~p~Lk~I~~~g~G~d~IDl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~  128 (130)
T d1ygya2          61 AAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVN  128 (130)
T ss_dssp             TCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCS
T ss_pred             hcccceEEeeecccccchhHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCcc
Confidence            3799999999999999999999999999    799999999999999999999999887777777766

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.56  E-value=3.1e-15  Score=115.53  Aligned_cols=111  Identities=13%  Similarity=0.236  Sum_probs=96.1

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhcc--CHHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHII--NKDV  152 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li--~~~~  152 (223)
                      ++|||||+|.||..+|++|...|++|.+|||+++...     +.....++.|++..+|+|++++|..+..+.++  ....
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~   81 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   81 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence            5799999999999999999999999999999876532     34446788999999999999999888777665  2447


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615          153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV  192 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV  192 (223)
                      +..+++|.++||++....-+...+.+.+++..+.  ++|.
T Consensus        82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~--~~da  119 (162)
T d3cuma2          82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  119 (162)
T ss_dssp             HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCc--EEec
Confidence            7889999999999999999999999999998886  7775

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.52  E-value=3.3e-14  Score=109.56  Aligned_cols=134  Identities=16%  Similarity=0.234  Sum_probs=93.0

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cc-ccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LF-PYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~-~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      ++|||||+|+||+.+|+.|+..|++|++|||+++..+     +. ....+..+.+++||+|++++|. ..+..++ ++..
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~-~~~~~vl-~~l~   78 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPI-QLILPTL-EKLI   78 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCH-HHHHHHH-HHHG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcH-hhhhhhh-hhhh
Confidence            5899999999999999999999999999999864322     21 1233455778999999999994 4667777 4677


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCC---CC-CCCCCCCceEEccCCCCC
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPN---VP-KEPLRLDNIVLLPCQNAL  218 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~---~~-~~l~~~~nv~~TPH~a~~  218 (223)
                      ..+++++++++++.........+ +.+..+-+..-.  .+.+|-.   .. ..|+....+++||+-++.
T Consensus        79 ~~l~~~~iv~~~~s~~~~~~~~~-~~~~~~~~~~h~--~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~  144 (165)
T d2f1ka2          79 PHLSPTAIVTDVASVKTAIAEPA-SQLWSGFIGGHP--MAGTAAQGIDGAEENLFVNAPYVLTPTEYTD  144 (165)
T ss_dssp             GGSCTTCEEEECCSCCHHHHHHH-HHHSTTCEEEEE--CCCCSCSSGGGCCTTTTTTCEEEEEECTTCC
T ss_pred             hhcccccceeeccccchHHHHHH-HHhhccccccee--eecccccchhhhcccccCCCeEEEEeCCCCC
Confidence            88999999999987654433333 333333332222  2222221   11 257777889999986643

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.50  E-value=2.4e-14  Score=109.84  Aligned_cols=98  Identities=14%  Similarity=0.275  Sum_probs=84.3

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-----CCcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      .|.||++.|+|||.+|+.+|++++++|++|++++.+|-..     +++ ...+++|+++.+|+++.++.    ..++|+.
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf-~v~~~~~a~~~aDi~vTaTG----n~~vI~~   94 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGF-NVVTLDEIVDKGDFFITCTG----NVDVIKL   94 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTC-EECCHHHHTTTCSEEEECCS----SSSSBCH
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCC-ccCchhHccccCcEEEEcCC----CCccccH
Confidence            4889999999999999999999999999999999887543     233 35789999999999999875    4568999


Q ss_pred             HHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 035615          151 DVMAELGKGGMIINVGRGAL-IDEKEMLQ  178 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~-vd~~al~~  178 (223)
                      +.|.+||+|+++-|++.... ||-++|.+
T Consensus        95 ~h~~~MKdgaIl~N~GHfd~EIdv~~L~~  123 (163)
T d1v8ba1          95 EHLLKMKNNAVVGNIGHFDDEIQVNELFN  123 (163)
T ss_dssp             HHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             HHHHHhhCCeEEEeccccchhhhhHHHHh
Confidence            99999999999999998875 66666653

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.46  E-value=5.2e-14  Score=109.88  Aligned_cols=111  Identities=13%  Similarity=0.173  Sum_probs=93.8

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------CcccccChhhhhcCCcEEEEeccCChhhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------LFPYCANVYDLAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------~~~~~~~l~el~~~aDiv~~~~p~t~~t~  145 (223)
                      .++|||||+|.||..||++|...|++|++|||++++.+             ++....++.+.+..+|.+++++|..+.+.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~   81 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD   81 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence            46799999999999999999999999999999875432             11223456677889999999999888877


Q ss_pred             hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615          146 HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV  192 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV  192 (223)
                      .++ ...+..+++|.++||++....-+...+.+.+.+..+.  ++|.
T Consensus        82 ~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~--~lda  125 (176)
T d2pgda2          82 NFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL--FVGS  125 (176)
T ss_dssp             HHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEE
T ss_pred             HHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCc--eecc
Confidence            765 5688899999999999999999999999999998887  6674

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.37  E-value=1.2e-12  Score=101.01  Aligned_cols=135  Identities=14%  Similarity=0.130  Sum_probs=96.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC-----Cc--ccccChhh-hhcCCcEEEEeccCChhhhhccC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV-----LF--PYCANVYD-LAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-----~~--~~~~~l~e-l~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      |+|+|||+|.||.++|+.|+..|+  +|++||++++..+     +.  ....+.++ ....+|+|++++|. ..+..++ 
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~-~~~~~vl-   79 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIA-   79 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HHHHHHH-
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCc-hhhhhhh-
Confidence            579999999999999999998885  7999999865422     11  11233333 34589999999993 3455555 


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCC-CCCC-CCCCCCCceEEccCCC
Q 035615          150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEND-PNVP-KEPLRLDNIVLLPCQN  216 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~E-P~~~-~~l~~~~nv~~TPH~a  216 (223)
                      .+....+++++++++++.....-.+++.+.+...-+.+--+.-.+.. |... ..|++-.++++|||-.
T Consensus        80 ~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~  148 (171)
T d2g5ca2          80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKK  148 (171)
T ss_dssp             HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSS
T ss_pred             hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCC
Confidence            45667789999999999977766777777777765555444443322 2112 3688888999999965

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.34  E-value=1.4e-13  Score=102.82  Aligned_cols=60  Identities=15%  Similarity=0.045  Sum_probs=53.5

Q ss_pred             CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCC
Q 035615            2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWA   66 (223)
Q Consensus         2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~   66 (223)
                      -+|+||+|+++++|+||||+++++++||    +||+++. +|||+++++|++.|++++..    +|.|+
T Consensus        62 ~~~~Lk~I~~~g~G~d~iD~~~~~~~gI~v~n~p~~~~~-vAE~a~~lil~~~R~i~~a~----~g~~~  125 (133)
T d1mx3a2          62 KFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVY-SEQASIEMREEAAREIRRAI----TGRIP  125 (133)
T ss_dssp             TCSSCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHC-CHHHHHHHHHHHHHHHHHHH----HSCTT
T ss_pred             hCCCCeEEEEcCCCcccEeeeeheeCCEEEEcCCCCCch-hHHHHHHHHHHHHhhHHHHH----hcccc
Confidence            3799999999999999999999999999    6999885 79999999999999997764    45665

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.33  E-value=8.5e-14  Score=108.56  Aligned_cols=63  Identities=13%  Similarity=-0.071  Sum_probs=58.9

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHH--------HHHHHHHHhCCcHHHHHHHcCCC
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLA--------IGLLIDFLRRISPGNWYVRAGLW   65 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~--------~~~~l~~~r~~~~~~~~~~~~~w   65 (223)
                      |||||+|++.++|+||||+++++++||    ++|+|+.+||||+        +++++...|++...+..+++|+|
T Consensus       111 ap~LKlI~~~g~G~D~VDl~aa~e~gI~V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         111 AKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             CTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred             CccceEEEEeccCCccccHHHHHhCCCEEEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence            899999999999999999999999999    6999999999999        88888999999888888888877

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.32  E-value=1e-13  Score=103.38  Aligned_cols=54  Identities=15%  Similarity=0.087  Sum_probs=50.3

Q ss_pred             ccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHH
Q 035615            4 YQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGN   57 (223)
Q Consensus         4 p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~   57 (223)
                      |+||+|++.++|+||||+++++++||    +|++++++|||++++++|++.|++.+.+
T Consensus        67 ~~Lk~I~~~~vG~d~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~~  124 (131)
T d1dxya2          67 YGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGE  124 (131)
T ss_dssp             TTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCeEEEEEcccccccccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHHH
Confidence            47999999999999999999999999    7999999999999999999999976543

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.29  E-value=1.3e-12  Score=99.85  Aligned_cols=108  Identities=16%  Similarity=0.208  Sum_probs=85.6

Q ss_pred             EEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcC
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL  156 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~m  156 (223)
                      ||||||+|+||..||++|...|+.+ +|+|+..+..    ......+..+.+.++|++++++|..++..... ...+..+
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~-~~l~~~~   79 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVA-EALYPYL   79 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTTC
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhh-ccccccc
Confidence            6999999999999999999888866 4555554322    11112334566678999999999877766554 5688899


Q ss_pred             CCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615          157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV  192 (223)
Q Consensus       157 k~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV  192 (223)
                      +++.++||+++...-....+.+.+++..+.  ++|.
T Consensus        80 ~~~~~iid~sT~~p~~~~~~~~~~~~~gi~--~lda  113 (156)
T d2cvza2          80 REGTYWVDATSGEPEASRRLAERLREKGVT--YLDA  113 (156)
T ss_dssp             CTTEEEEECSCCCHHHHHHHHHHHHTTTEE--EEEC
T ss_pred             cccccccccccCCHHHHHHHHHHHHHcCCe--EEec
Confidence            999999999999999999999999999887  7775

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.21  E-value=1.1e-11  Score=94.06  Aligned_cols=101  Identities=11%  Similarity=0.188  Sum_probs=77.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA  154 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~  154 (223)
                      ++|||||+|+||+.+|+.|...|++|.++++.+.+..     +.....+.+|++++||+|++++|...... .+ .+...
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~-~~-~~~~~   78 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALG-AA-RRAGR   78 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHH-HH-HHHHT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHH-HH-Hhhcc
Confidence            5899999999999999999999999999987765432     22235678999999999999999654333 22 22333


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 035615          155 ELGKGGMIINVGRGALIDEKEMLQFLVQGD  184 (223)
Q Consensus       155 ~mk~ga~lIN~arg~~vd~~al~~aL~~~~  184 (223)
                      .  .+.++|+++.........+.+.+++.+
T Consensus        79 ~--~~~~~id~st~~p~~~~~l~~~~~~~~  106 (152)
T d1i36a2          79 H--VRGIYVDINNISPETVRMASSLIEKGG  106 (152)
T ss_dssp             T--CCSEEEECSCCCHHHHHHHHHHCSSSE
T ss_pred             c--CCceeeccCcCCHHHHHHHHHHHhccC
Confidence            2  367899999988887888888876643

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.19  E-value=1.5e-11  Score=95.50  Aligned_cols=109  Identities=18%  Similarity=0.236  Sum_probs=87.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cc--------ccccC---hhhhhcCCcEEEEeccCChh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LF--------PYCAN---VYDLAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~--------~~~~~---l~el~~~aDiv~~~~p~t~~  143 (223)
                      ++|||||+|+||..+|++|...|++|++|||++++..     +.        ....+   +-..+..++.+..+++....
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            6799999999999999999999999999999865432     10        11122   33456788999999987777


Q ss_pred             hhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee
Q 035615          144 THHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD  191 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD  191 (223)
                      ....+ ......++++.++||+++...-+...+.+.|.+..+.  ++|
T Consensus        82 ~~~~~-~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~--~ld  126 (178)
T d1pgja2          82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR--FLG  126 (178)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCE--EEE
T ss_pred             hhhhh-hhhhhhccccceecccCccchhHHHHHHHHHhhccee--Eec
Confidence            76666 3567778999999999999999999999999999887  455

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=4.2e-12  Score=94.62  Aligned_cols=49  Identities=6%  Similarity=-0.180  Sum_probs=43.2

Q ss_pred             CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHh
Q 035615            3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLR   51 (223)
Q Consensus         3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r   51 (223)
                      ||+||+|+++|+||||||+++++++||    +||+++.+|||+++++|++..|
T Consensus        67 ~p~Lk~I~~~gvG~D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~~~~~  119 (132)
T d1sc6a2          67 AEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLI  119 (132)
T ss_dssp             CSSCCEEEECSSCCTTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHHHHHH
T ss_pred             cccceeEEEecccccccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHHHHhh
Confidence            799999999999999999999999999    7999999999987665544333

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.10  E-value=8.1e-11  Score=89.34  Aligned_cols=96  Identities=22%  Similarity=0.351  Sum_probs=76.2

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      ++|||||+|+||+++++.|...|.++.+++|+.++..      +.....+.++++++||+|+++++  |+.   + ++.+
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk--p~~---~-~~vl   74 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK--PQL---F-ETVL   74 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC--GGG---H-HHHH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc--hHh---H-HHHh
Confidence            5899999999999999999999999999998865432      34455789999999999999996  321   1 4567


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      +.++++.++|++.-|  +..+.|.+.+..+
T Consensus        75 ~~l~~~~~iis~~ag--i~~~~l~~~l~~~  102 (152)
T d2ahra2          75 KPLHFKQPIISMAAG--ISLQRLATFVGQD  102 (152)
T ss_dssp             TTSCCCSCEEECCTT--CCHHHHHHHHCTT
T ss_pred             hhcccceeEeccccc--ccHHHHHhhhccc
Confidence            788999999999877  4566677777543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.09  E-value=1.2e-10  Score=87.95  Aligned_cols=93  Identities=22%  Similarity=0.241  Sum_probs=72.8

Q ss_pred             cCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhc
Q 035615           77 LGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE  155 (223)
Q Consensus        77 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~  155 (223)
                      ..-++|+||| +|.||+.+|+.|+..|++|.+||+...        ...++.+..+|++++++|.. .+...+ .+.+..
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~--------~~~~~~~~~~~~v~~~~~~~-~~~~v~-~~~~~~   76 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW--------AVAESILANADVVIVSVPIN-LTLETI-ERLKPY   76 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG--------GGHHHHHTTCSEEEECSCGG-GHHHHH-HHHGGG
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc--------cccchhhhhccccccccchh-hheeee-eccccc
Confidence            3457999999 999999999999999999999998753        34567789999999999854 333333 677888


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHH
Q 035615          156 LGKGGMIINVGRGALIDEKEMLQF  179 (223)
Q Consensus       156 mk~ga~lIN~arg~~vd~~al~~a  179 (223)
                      +++++++++++.-..--.+++.+.
T Consensus        77 ~~~~~iiiD~~Svk~~~~~~~~~~  100 (152)
T d2pv7a2          77 LTENMLLADLTSVKREPLAKMLEV  100 (152)
T ss_dssp             CCTTSEEEECCSCCHHHHHHHHHH
T ss_pred             ccCCceEEEecccCHHHHHHHHHH
Confidence            999999999997554333444443

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.05  E-value=6.8e-11  Score=87.57  Aligned_cols=50  Identities=12%  Similarity=0.056  Sum_probs=43.0

Q ss_pred             Cc-cceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHH---HHHHHHhC
Q 035615            3 CY-QTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIG---LLIDFLRR   52 (223)
Q Consensus         3 ~p-~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~---~~l~~~r~   52 (223)
                      +| +||+|+++++|+||||+++++++||    +||+++++|||+++.   +++++.|.
T Consensus        64 ~~~~LK~I~~~gvG~d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~l~~~  121 (129)
T d1gdha2          64 IPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALFGG  121 (129)
T ss_dssp             SCTTCCEEEEESSCCTTBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhcceeeeecccCCccccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHHHhCC
Confidence            67 7999999999999999999999999    799999999996554   55555554

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.03  E-value=4.1e-10  Score=86.77  Aligned_cols=104  Identities=15%  Similarity=0.141  Sum_probs=77.1

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------------CcccccChhhhhcCCcEEEEec
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------------LFPYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------------~~~~~~~l~el~~~aDiv~~~~  138 (223)
                      .||++|||.|.||..+|..|...|++|.+|+|+++..+                    ......++.|.++++|+|++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            48999999999999999999999999999999754211                    0112357889999999999999


Q ss_pred             cCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 035615          139 ALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDI  185 (223)
Q Consensus       139 p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i  185 (223)
                      |.. .++.++ ++....++++.+++- ..|....+..+.+.+.....
T Consensus        81 ~~~-~~~~~~-~~i~~~l~~~~~iv~-~~g~~~~~~~~~~~~~~~~~  124 (184)
T d1bg6a2          81 PAI-HHASIA-ANIASYISEGQLIIL-NPGATGGALEFRKILRENGA  124 (184)
T ss_dssp             CGG-GHHHHH-HHHGGGCCTTCEEEE-SSCCSSHHHHHHHHHHHTTC
T ss_pred             chh-HHHHHH-HHhhhccCCCCEEEE-eCCCCccHHHHHHHHHHhcC
Confidence            843 455554 456678899998774 44554555566677766543

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.00  E-value=4.4e-11  Score=89.17  Aligned_cols=56  Identities=7%  Similarity=-0.188  Sum_probs=46.6

Q ss_pred             ccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCC
Q 035615            4 YQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLW   65 (223)
Q Consensus         4 p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w   65 (223)
                      ++||+|++.++||||||+++++++||    +|++   +||||++++||++.|++.   ..+.+|+|
T Consensus        68 ~~LK~I~~~~vG~d~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~---~~~~~~k~  127 (134)
T d1j4aa2          68 NGITKMSLRNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNN---LELVEGKE  127 (134)
T ss_dssp             TTCCEEEESSSCCTTBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHH---HHHHTTCC
T ss_pred             cCeeEEEEccCCcCccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHh---HHHhhhhc
Confidence            57999999999999999999999999    5776   589999999999999753   34444443

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.89  E-value=8.3e-10  Score=84.71  Aligned_cols=91  Identities=13%  Similarity=0.191  Sum_probs=73.9

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCC--------c----ccccChhhhhcCCcEEEEecc-CCh
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVL--------F----PYCANVYDLAVNSDVLVVCCA-LTE  142 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~--------~----~~~~~l~el~~~aDiv~~~~p-~t~  142 (223)
                      .+...+|.|||.|..|...++.++++|.+|.++|.+....+.        .    .....+++.+++||+|+.++- ...
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~  108 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  108 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence            356789999999999999999999999999999987654321        0    112357788999999998863 234


Q ss_pred             hhhhccCHHHHhcCCCCcEEEEcC
Q 035615          143 QTHHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       143 ~t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      ..-.+|+++.++.||||+++||++
T Consensus       109 ~aP~lIt~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1         109 RAPILVPASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             ccCeeecHHHHhhcCCCcEEEEee
Confidence            567889999999999999999996

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.84  E-value=2e-10  Score=86.64  Aligned_cols=84  Identities=14%  Similarity=-0.027  Sum_probs=57.9

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcC
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL  156 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~m  156 (223)
                      |||||+|+||+.+++.|+..+..+.+|+|++++.+     ......++.++++++|+|++++|.. ...     +.++.+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~-~i~-----~v~~~l   75 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDR-YIK-----TVANHL   75 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTT-THH-----HHHTTT
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccch-hhh-----HHHhhh
Confidence            79999999999999999874433468999876532     2334567889999999999999943 333     344555


Q ss_pred             -CCCcEEEEcCCCccc
Q 035615          157 -GKGGMIINVGRGALI  171 (223)
Q Consensus       157 -k~ga~lIN~arg~~v  171 (223)
                       +++.++|+++.+...
T Consensus        76 ~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          76 NLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             CCSSCCEEECCSSSCG
T ss_pred             cccceeeeecccchhh
Confidence             478999999977654

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.82  E-value=2e-09  Score=82.17  Aligned_cols=94  Identities=23%  Similarity=0.254  Sum_probs=72.2

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC------C--cccccChhhhhcCCcEEEEeccCChhhhh
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV------L--FPYCANVYDLAVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~--~~~~~~l~el~~~aDiv~~~~p~t~~t~~  146 (223)
                      .+++++|.|||.|.||+.+++.|...|+ ++.+++|+.++..      +  ...+.++.+.+.++|+|+.+++   ....
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~ats---s~~~   97 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATA---APHP   97 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCS---SSSC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecC---CCCc
Confidence            4889999999999999999999999998 5999999865432      1  2235677888999999999986   3466


Q ss_pred             ccCHHHHhcC------CCCcEEEEcCCCcccC
Q 035615          147 IINKDVMAEL------GKGGMIINVGRGALID  172 (223)
Q Consensus       147 li~~~~l~~m------k~ga~lIN~arg~~vd  172 (223)
                      +|+++.++..      ++..+|||.+.-.-||
T Consensus        98 ii~~~~i~~~~~~r~~~~~~~iiDlavPr~vd  129 (159)
T d1gpja2          98 VIHVDDVREALRKRDRRSPILIIDIANPRDVE  129 (159)
T ss_dssp             CBCHHHHHHHHHHCSSCCCEEEEECCSSCSBC
T ss_pred             cccHhhhHHHHHhcccCCCeEEEeecCCCCcC
Confidence            7887766432      2346899998665444

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.72  E-value=4.1e-08  Score=77.53  Aligned_cols=104  Identities=18%  Similarity=0.246  Sum_probs=80.4

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----CcccccChhhhhc-CCcEEEEeccCChhhhhccCH
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LFPYCANVYDLAV-NSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~el~~-~aDiv~~~~p~t~~t~~li~~  150 (223)
                      +|.|+||+|-|+|++|+.+|+.|..+|++|+++|.......    ......+.++++. .||+++-|.     +.+.|++
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~~~~~~~~~~DI~iPcA-----~~~~I~~   98 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCA-----MGGVITT   98 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEECS-----CSCCBCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccCccccccccceeeeccc-----ccccccH
Confidence            48999999999999999999999999999999987654321    1122346677765 799888664     4678999


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      +..++++- .+++..+.+++.+++ ..+.|+++.|.
T Consensus        99 ~~a~~i~a-k~i~e~AN~p~~~~~-~~~~L~~rgI~  132 (201)
T d1c1da1          99 EVARTLDC-SVVAGAANNVIADEA-ASDILHARGIL  132 (201)
T ss_dssp             HHHHHCCC-SEECCSCTTCBCSHH-HHHHHHHTTCE
T ss_pred             HHHhhhhh-heeeccCCCCcchhh-HHHHhcccceE
Confidence            99999974 577888888887775 35667777665

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=2.2e-08  Score=75.52  Aligned_cols=87  Identities=23%  Similarity=0.225  Sum_probs=66.7

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCC-------c-----ccccChhhhhcCCcEEEEeccCChhhhhc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVL-------F-----PYCANVYDLAVNSDVLVVCCALTEQTHHI  147 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~-------~-----~~~~~l~el~~~aDiv~~~~p~t~~t~~l  147 (223)
                      ++|+|||.|.||..+|..|...|++|..++|.......       .     ....+..+.+..+|+|+++++. .+++..
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka-~~~~~~   79 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA-WQVSDA   79 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-GGHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecc-cchHHH
Confidence            68999999999999999999999999999998765321       0     1123455677899999999984 455554


Q ss_pred             cCHHHHhcCCCCcEEEEcCCC
Q 035615          148 INKDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       148 i~~~~l~~mk~ga~lIN~arg  168 (223)
                      + +.....+++++.++.+..|
T Consensus        80 ~-~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          80 V-KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             H-HHHHTTSCTTSCEEEECSS
T ss_pred             H-HhhccccCcccEEeeccCc
Confidence            4 3455667788888888776

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.67  E-value=3.1e-08  Score=76.77  Aligned_cols=89  Identities=13%  Similarity=0.254  Sum_probs=69.6

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc-----------------------------cc
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY-----------------------------CA  122 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~-----------------------------~~  122 (223)
                      +..-+|.|||.|..|...++.++++|.+|.++|.+....+     ...+                             ..
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            5567999999999999999999999999999998765432     0000                             11


Q ss_pred             ChhhhhcCCcEEEEec--cCChhhhhccCHHHHhcCCCCcEEEEcC
Q 035615          123 NVYDLAVNSDVLVVCC--ALTEQTHHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       123 ~l~el~~~aDiv~~~~--p~t~~t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      .+.+.++++|+|+.++  |. ...-.+|+++.++.||||+++||++
T Consensus       107 ~l~~~l~~aDlVI~talipG-~~aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPG-KPAPVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTT-SCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHHhhhhheeeeecCC-cccceeehHHHHHhcCCCcEEEEEe
Confidence            2445688999998775  42 2355689999999999999999987

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.66  E-value=8.4e-09  Score=77.69  Aligned_cols=93  Identities=18%  Similarity=0.272  Sum_probs=65.2

Q ss_pred             CEEEEEecChHHHHHHHHHHhCC-CEEEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFG-FIISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      ++|||||+|+||+++++.|...| .+|.+++|+++..+      +.....+.++ ++++|+|+++++ .....     +.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavk-P~~~~-----~v   73 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVK-PQDME-----AA   73 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSC-HHHHH-----HH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecC-HHHHH-----Hh
Confidence            58999999999999999876656 89999999875432      2333445544 678999999996 12222     23


Q ss_pred             HhcCC-CCcEEEEcCCCcccCHHHHHHHHH
Q 035615          153 MAELG-KGGMIINVGRGALIDEKEMLQFLV  181 (223)
Q Consensus       153 l~~mk-~ga~lIN~arg~~vd~~al~~aL~  181 (223)
                      ++.++ .+.++|.+.-|--  .+.+.+.+.
T Consensus        74 ~~~l~~~~~~viS~~ag~~--~~~l~~~l~  101 (152)
T d1yqga2          74 CKNIRTNGALVLSVAAGLS--VGTLSRYLG  101 (152)
T ss_dssp             HTTCCCTTCEEEECCTTCC--HHHHHHHTT
T ss_pred             HHHHhhcccEEeecccCCC--HHHHHHHhC
Confidence            33443 4688998887764  456666664

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.65  E-value=1.4e-08  Score=77.98  Aligned_cols=87  Identities=17%  Similarity=0.229  Sum_probs=68.8

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-C----CcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-V----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      -|++|+|+|||||.-|++=|..|+..|++|++--|..... .    ......+++|..+++|+|.+.+|.. ....+..+
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~eA~~~aDiim~L~PD~-~q~~vy~~   91 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDE-FQGRLYKE   91 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHH-HHHHHHHH
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHHHhhhcCeeeeecchH-HHHHHHHH
Confidence            4789999999999999999999999999987765544321 1    1223568999999999999999933 33455667


Q ss_pred             HHHhcCCCCcEEE
Q 035615          151 DVMAELGKGGMII  163 (223)
Q Consensus       151 ~~l~~mk~ga~lI  163 (223)
                      +....||+|+.+.
T Consensus        92 ~I~p~lk~g~~L~  104 (182)
T d1np3a2          92 EIEPNLKKGATLA  104 (182)
T ss_dssp             HTGGGCCTTCEEE
T ss_pred             hhhhhcCCCcEEE
Confidence            7889999998765

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.56  E-value=1.3e-08  Score=72.93  Aligned_cols=90  Identities=16%  Similarity=0.103  Sum_probs=65.3

Q ss_pred             CCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------Ccc--cccChhhhhcCCcEEEEeccCCh
Q 035615           72 PLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------LFP--YCANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        72 ~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~--~~~~l~el~~~aDiv~~~~p~t~  142 (223)
                      |..-+|+|++|.|||.|.+|..-++.|..+|++|+++++...+..       ...  ...--++.+..+++|+.+..   
T Consensus         5 Pi~l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~---   81 (113)
T d1pjqa1           5 PIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATD---   81 (113)
T ss_dssp             EEEECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCS---
T ss_pred             ceEEEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCC---
Confidence            345679999999999999999999999999999999987665321       111  00111345678888887653   


Q ss_pred             hhhhccCHHHHhcCCCCcEEEEcC
Q 035615          143 QTHHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       143 ~t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                        ...+|++..+.+|+..++||+.
T Consensus        82 --d~~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          82 --DDTVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             --CHHHHHHHHHHHHHTTCEEEET
T ss_pred             --CHHHHHHHHHHHHHcCCEEEeC
Confidence              2335666777778888999964

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.55  E-value=5.1e-08  Score=75.44  Aligned_cols=88  Identities=16%  Similarity=0.212  Sum_probs=64.4

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-----------C---------CcccccChhhhhcCCcEEEEecc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-----------V---------LFPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----------~---------~~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      ++|+|||.|.+|.++|..|...|.+|..|.|...+.           .         ......+++++++.+|+|++++|
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            689999999999999999999999999998743210           0         01124678899999999999999


Q ss_pred             CChhhhhccCHHHHhcCCCCcEEEEcCCCcc
Q 035615          140 LTEQTHHIINKDVMAELGKGGMIINVGRGAL  170 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~mk~ga~lIN~arg~~  170 (223)
                       +...+.++ ++....+++. .+|.++.|..
T Consensus        81 -s~~~~~~~-~~l~~~l~~~-~ii~~tkg~~  108 (180)
T d1txga2          81 -TDGVLPVM-SRILPYLKDQ-YIVLISKGLI  108 (180)
T ss_dssp             -GGGHHHHH-HHHTTTCCSC-EEEECCCSEE
T ss_pred             -hhhhHHHH-Hhhccccccc-eecccccCcc
Confidence             44555555 3455556654 5666667654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.46  E-value=3.9e-08  Score=76.86  Aligned_cols=90  Identities=9%  Similarity=0.042  Sum_probs=65.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-------------C------CcccccChhhhhcCCcEEEEec
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-------------V------LFPYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------------~------~~~~~~~l~el~~~aDiv~~~~  138 (223)
                      .-++|+|||.|.+|.++|..|...|.+|..|+|+++..             .      ......+++++++.+|+|++++
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiav   85 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVI   85 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECS
T ss_pred             eeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcC
Confidence            34579999999999999999999999999998764311             1      1223567899999999999999


Q ss_pred             cCChhhhhccCHH---H-HhcCCCCcEEEEcCCC
Q 035615          139 ALTEQTHHIINKD---V-MAELGKGGMIINVGRG  168 (223)
Q Consensus       139 p~t~~t~~li~~~---~-l~~mk~ga~lIN~arg  168 (223)
                      | +...+.++.+-   . ....+++..+|+++.|
T Consensus        86 P-s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          86 P-TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             C-HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             c-HHHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            9 44444444221   0 1123567779998877

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.7e-07  Score=73.22  Aligned_cols=111  Identities=10%  Similarity=0.099  Sum_probs=78.8

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C------------------cccccChh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L------------------FPYCANVY  125 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~------------------~~~~~~l~  125 (223)
                      ++|+|||.|.||+.+|..+...|++|..||++++...                +                  .....++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            6999999999999999999999999999998864211                0                  01245677


Q ss_pred             hhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCC
Q 035615          126 DLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVF  193 (223)
Q Consensus       126 el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~  193 (223)
                      +.++.||+|+=++|..-+.+.-+-++.-+.++++++|...+.+  +....|.+.+.. .-+..++--|
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hff  149 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATTR-QDRFAGLHFF  149 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSSC-GGGEEEEEEC
T ss_pred             hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcc--cccchhhhhccC-HhHEEeeccc
Confidence            8899999999999988776655545566667888888754443  334445555543 2333455434

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.42  E-value=3.1e-07  Score=72.04  Aligned_cols=132  Identities=14%  Similarity=0.091  Sum_probs=84.5

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC------------C-------------CcccccChhhhhcCCcEE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS------------V-------------LFPYCANVYDLAVNSDVL  134 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------~-------------~~~~~~~l~el~~~aDiv  134 (223)
                      ++|+|||+|.+|..+|..+...|++|++||.+.+..            .             ......++++.++.||++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            589999999999999999999999999999764321            0             112346788889999999


Q ss_pred             EEeccCChh---------hhhccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH-Hc--CCceEEEee-CCCCCCCC
Q 035615          135 VVCCALTEQ---------THHIIN--KDVMAELGKGGMIINVGRGALIDEKEMLQFL-VQ--GDINGVGLD-VFENDPNV  199 (223)
Q Consensus       135 ~~~~p~t~~---------t~~li~--~~~l~~mk~ga~lIN~arg~~vd~~al~~aL-~~--~~i~~a~lD-V~~~EP~~  199 (223)
                      ++|+|....         ....++  .+.++..+++.++|.-|.-.+--.+.+...+ ++  +...+--+. +|.+|=+.
T Consensus        81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE~~~  160 (202)
T d1mv8a2          81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLR  160 (202)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCC
T ss_pred             EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhhhhc
Confidence            999983211         111111  2345566788999998887775555554433 22  111100111 25566654


Q ss_pred             CC----CCCCCCceEE
Q 035615          200 PK----EPLRLDNIVL  211 (223)
Q Consensus       200 ~~----~l~~~~nv~~  211 (223)
                      +.    .+...|++++
T Consensus       161 ~G~a~~d~~~~~~iVi  176 (202)
T d1mv8a2         161 ESTAIKDYDFPPMTVI  176 (202)
T ss_dssp             TTSHHHHHHSCSCEEE
T ss_pred             ccchhhhhcCCCeEEE
Confidence            43    4666777665

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=2.1e-07  Score=64.17  Aligned_cols=62  Identities=19%  Similarity=0.196  Sum_probs=45.1

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------Ccc-ccc-ChhhhhcCCcEEEEe
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFP-YCA-NVYDLAVNSDVLVVC  137 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~-~~~-~l~el~~~aDiv~~~  137 (223)
                      +++||+|.|+|+|..|+++|+.|...|++|.++|.......      ... ... .-++.+.+.|+|++.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~S   71 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVAS   71 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEEC
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEEC
Confidence            57899999999999999999999999999999987654321      111 011 123456677777764

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.36  E-value=6.3e-07  Score=70.83  Aligned_cols=86  Identities=12%  Similarity=0.224  Sum_probs=63.2

Q ss_pred             cCC-CEEEEEecChHHHHHHHHHHh------CCCEEEE-EcCCCCCC-----CCcc----cccChhhhhcCCcEEEEecc
Q 035615           77 LGG-MQVGIVRLGNIGSEVLNRLQA------FGFIISY-NSRRKRPS-----VLFP----YCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        77 l~g-~~vgIiG~G~iG~~~a~~l~~------~G~~V~~-~~~~~~~~-----~~~~----~~~~l~el~~~aDiv~~~~p  139 (223)
                      ++| |+|+|||||.-|++=|..|+.      .|.+|++ ..+.....     .++.    ...+.+|..++||+|.+.+|
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlP  120 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS  120 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSC
T ss_pred             hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecc
Confidence            678 899999999999999999998      4566654 43332221     2332    13478899999999999999


Q ss_pred             CChhhhhccCHHHHhcCCCCcEEEE
Q 035615          140 LTEQTHHIINKDVMAELGKGGMIIN  164 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~mk~ga~lIN  164 (223)
                      ...+ ..+. ++....||+|+.+.-
T Consensus       121 De~Q-~~vy-~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         121 DSAQ-ADNY-EKVFSHMKPNSILGL  143 (226)
T ss_dssp             HHHH-HHHH-HHHHHHSCTTCEEEE
T ss_pred             hHHH-HHHH-HHHHHhcCCCceeee
Confidence            5433 3345 478899999997653

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.30  E-value=1.2e-07  Score=73.66  Aligned_cols=111  Identities=14%  Similarity=0.114  Sum_probs=77.2

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C-c-----------ccccChhhhhcCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L-F-----------PYCANVYDLAVNS  131 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-~-----------~~~~~l~el~~~a  131 (223)
                      ++|+|||.|.||+.+|..+...|++|..||++++..+                + .           ....+..+.+.++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a   84 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNV   84 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccccccc
Confidence            5699999999999999999999999999999865311                0 0           0012222347899


Q ss_pred             cEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCC
Q 035615          132 DVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVF  193 (223)
Q Consensus       132 Div~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~  193 (223)
                      |+|+=++|.+-+.+.-+-++.-+.++++++|...+.+-.+  ..|.+.+.. .-+..++--|
T Consensus        85 dlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i--~~la~~~~~-p~r~~g~Hf~  143 (186)
T d1wdka3          85 DLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISI--SLLAKALKR-PENFVGMHFF  143 (186)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCH--HHHGGGCSC-GGGEEEEECC
T ss_pred             ceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccH--HHHHHhccC-chheEeeccc
Confidence            9999999988777765556777778999988866555433  555555543 2333454434

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.8e-06  Score=66.01  Aligned_cols=83  Identities=17%  Similarity=0.296  Sum_probs=66.5

Q ss_pred             ccccCCCEEEEEecCh-HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615           74 GFKLGGMQVGIVRLGN-IGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV  152 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~  152 (223)
                      +.+++||++.|||-+. +|+.+|..|...|++|..++...         .++.+..+++|+++.+++    ..+++..+ 
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t---------~~l~~~~~~aDivi~a~G----~~~~i~~~-   99 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT---------AHLDEEVNKGDILVVATG----QPEMVKGE-   99 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------SSHHHHHTTCSEEEECCC----CTTCBCGG-
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEeccc---------ccHHHHHhhccchhhccc----cccccccc-
Confidence            3469999999999866 89999999999999999887653         367788999999999987    34567665 


Q ss_pred             HhcCCCCcEEEEcCCCcccC
Q 035615          153 MAELGKGGMIINVGRGALID  172 (223)
Q Consensus       153 l~~mk~ga~lIN~arg~~vd  172 (223)
                        ..|+|+++||++--.+.|
T Consensus       100 --~vk~g~iviDvgi~~~~~  117 (170)
T d1a4ia1         100 --WIKPGAIVIDCGINYVPD  117 (170)
T ss_dssp             --GSCTTCEEEECCCBC---
T ss_pred             --cccCCCeEeccCcccccc
Confidence              469999999998655444

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.1e-06  Score=66.96  Aligned_cols=79  Identities=22%  Similarity=0.328  Sum_probs=65.4

Q ss_pred             cccCCCEEEEEecCh-HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           75 FKLGGMQVGIVRLGN-IGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      .++.||++.|||-+. +|+.++..|...|++|+.++...         .++.+.++++|+|+.++.    ..++|..+. 
T Consensus        33 i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t---------~~l~~~~~~ADivI~a~G----~p~~i~~~~-   98 (166)
T d1b0aa1          33 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------KNLRHHVENADLLIVAVG----KPGFIPGDW-   98 (166)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------SCHHHHHHHCSEEEECSC----CTTCBCTTT-
T ss_pred             cccccceEEEEeccccccHHHHHHHHHhhcccccccccc---------chhHHHHhhhhHhhhhcc----Ccccccccc-
Confidence            468999999999877 99999999999999998886543         367888999999999986    346677654 


Q ss_pred             hcCCCCcEEEEcCCCc
Q 035615          154 AELGKGGMIINVGRGA  169 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~  169 (223)
                        +|+|+++||++--.
T Consensus        99 --vk~g~vvIDvGi~~  112 (166)
T d1b0aa1          99 --IKEGAIVIDVGINR  112 (166)
T ss_dssp             --SCTTCEEEECCCEE
T ss_pred             --cCCCcEEEecCcee
Confidence              58999999998543

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.26  E-value=9.7e-07  Score=68.56  Aligned_cols=126  Identities=10%  Similarity=0.036  Sum_probs=84.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----------------------CcccccChhhhhcCCcEEEE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----------------------LFPYCANVYDLAVNSDVLVV  136 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----------------------~~~~~~~l~el~~~aDiv~~  136 (223)
                      ++|+|||+|.+|..+|..+. .|++|++||.+++...                       ......+......++|++++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            68999999999999998775 6999999997754211                       01112344555788999999


Q ss_pred             eccCChhhhh-ccC-------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC----CCC
Q 035615          137 CCALTEQTHH-IIN-------KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK----EPL  204 (223)
Q Consensus       137 ~~p~t~~t~~-li~-------~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~----~l~  204 (223)
                      ++|....... ..+       .+.+...+++.++|.-+.-.+-..+.+.+-+.+.++.      |.+|-+.+.    .+.
T Consensus        80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~G~ai~d~~  153 (196)
T d1dlja2          80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRESKALYDNL  153 (196)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCTTSTTHHHH
T ss_pred             cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcchhhhHhhcc
Confidence            9985433221 111       1223344678888888888777777888877776653      567776553    355


Q ss_pred             CCCceEEc
Q 035615          205 RLDNIVLL  212 (223)
Q Consensus       205 ~~~nv~~T  212 (223)
                      ..|++++-
T Consensus       154 ~p~riv~G  161 (196)
T d1dlja2         154 YPSRIIVS  161 (196)
T ss_dssp             SCSCEEEE
T ss_pred             CCCEEEEe
Confidence            66777653

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=98.20  E-value=2e-06  Score=68.93  Aligned_cols=104  Identities=18%  Similarity=0.248  Sum_probs=79.3

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------CcccccChhhhh-cCCcEEEEeccCChhhhhc
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFPYCANVYDLA-VNSDVLVVCCALTEQTHHI  147 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~el~-~~aDiv~~~~p~t~~t~~l  147 (223)
                      .+|.|+||.|-|+|++|+.+|+.|...|++|++.|.+.....      +. ...+.++++ ..||+++-|.     ..+.
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~-~~~~~~~~~~~~cDIl~PcA-----~~~~  108 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGA-DAVAPNAIYGVTCDIFAPCA-----LGAV  108 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCC-EECCGGGTTTCCCSEEEECS-----CSCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCC-cccCCcccccccccEecccc-----cccc
Confidence            458999999999999999999999999999999887653321      22 234555655 4799998876     4778


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          148 INKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       148 i~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      |+++....++- .+++-.+...+.+.++- +.|.++.|.
T Consensus       109 I~~~~~~~l~a-k~Ive~ANn~~t~~ea~-~~L~~rGI~  145 (230)
T d1leha1         109 LNDFTIPQLKA-KVIAGSADNQLKDPRHG-KYLHELGIV  145 (230)
T ss_dssp             BSTTHHHHCCC-SEECCSCSCCBSSHHHH-HHHHHHTCE
T ss_pred             cChHHhhccCc-cEEEecccCCCCCchHH-HHHHhhCcE
Confidence            89888888874 57888888888887664 556555554

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.18  E-value=6.6e-07  Score=65.19  Aligned_cols=68  Identities=15%  Similarity=0.213  Sum_probs=50.6

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----C-------cccccChhhh-hcCCcEEEEeccCChhhhh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----L-------FPYCANVYDL-AVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~-------~~~~~~l~el-~~~aDiv~~~~p~t~~t~~  146 (223)
                      |++.|+|+|++|+.+|+.|...|.+|+++|.+++...     +       ......++++ +.++|.+++++|....+.-
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~   80 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAST   80 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhHH
Confidence            5789999999999999999999999999988764321     1       1112334454 7899999999986655443


Q ss_pred             c
Q 035615          147 I  147 (223)
Q Consensus       147 l  147 (223)
                      +
T Consensus        81 ~   81 (134)
T d2hmva1          81 L   81 (134)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.18  E-value=1.2e-06  Score=67.07  Aligned_cols=94  Identities=14%  Similarity=0.089  Sum_probs=67.2

Q ss_pred             CccccCCCEEEEEecChH-HHHHHHHHHhCCCEEEEEcCCCCCC----C----Ccc--------cccChhhhhcCCcEEE
Q 035615           73 LGFKLGGMQVGIVRLGNI-GSEVLNRLQAFGFIISYNSRRKRPS----V----LFP--------YCANVYDLAVNSDVLV  135 (223)
Q Consensus        73 ~~~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~----~----~~~--------~~~~l~el~~~aDiv~  135 (223)
                      .+.+++||++.|||-+++ |+.+|..|...|+.|..++......    .    ...        ..+.+.+...++|+++
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvI  102 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI  102 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEE
Confidence            466899999999998865 9999999999999998776442110    0    000        0123667788999999


Q ss_pred             EeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccC
Q 035615          136 VCCALTEQTHHIINKDVMAELGKGGMIINVGRGALID  172 (223)
Q Consensus       136 ~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd  172 (223)
                      ..+|..   ...+..+   ..|+|+++||++-....+
T Consensus       103 savG~p---~~~i~~d---~ik~GavvIDvGi~~~~~  133 (171)
T d1edza1         103 TGVPSE---NYKFPTE---YIKEGAVCINFACTKNFS  133 (171)
T ss_dssp             ECCCCT---TCCBCTT---TSCTTEEEEECSSSCCBC
T ss_pred             EccCCC---ccccChh---hcccCceEeecccccccc
Confidence            999732   1125544   358999999999765444

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=98.16  E-value=6.2e-06  Score=66.45  Aligned_cols=104  Identities=15%  Similarity=0.180  Sum_probs=76.1

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC---C--------------------------CCcccccChh
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP---S--------------------------VLFPYCANVY  125 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~---~--------------------------~~~~~~~~l~  125 (223)
                      .+|+|+||.|=|+|++|+.+|+.|...|++|++++.....   .                          .+.....+.+
T Consensus        27 ~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (242)
T d1v9la1          27 GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPD  106 (242)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcc
Confidence            3589999999999999999999999999999876543210   0                          0111122345


Q ss_pred             hhhc-CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          126 DLAV-NSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       126 el~~-~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      +++. .||+++-|.     ..+.|+++..++++- .+++-.+.+++ ..++ .+.|.++.|.
T Consensus       107 ~i~~~~~DIliPcA-----~~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI~  160 (242)
T d1v9la1         107 AIFKLDVDIFVPAA-----IENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVV  160 (242)
T ss_dssp             GGGGCCCSEEEECS-----CSSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             hhccccccEEeecc-----hhccccHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCeE
Confidence            5554 799998876     466788888888874 57888889987 5555 4788888776

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=98.07  E-value=1.1e-05  Score=61.28  Aligned_cols=64  Identities=27%  Similarity=0.302  Sum_probs=49.1

Q ss_pred             CCEEEEEecChHHHHHHHHHHhC-CCEEE-EEcCCCCCCC--CcccccChhhhhcCCcEEEEeccCCh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAF-GFIIS-YNSRRKRPSV--LFPYCANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~--~~~~~~~l~el~~~aDiv~~~~p~t~  142 (223)
                      ..+|||||+|.||+..++.++.. +++++ +++++.+...  ......+.+++..+.|+|++++|...
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~   70 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSAT   70 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTTT
T ss_pred             cceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccccccccchhhhhhccccceEEEeCCCcc
Confidence            45799999999999999999875 67754 6677665443  23345677788899999999998653

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=4.4e-06  Score=63.52  Aligned_cols=106  Identities=11%  Similarity=0.044  Sum_probs=73.0

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------CcccccChhhh-hcCCcEEEEeccCChhh
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------LFPYCANVYDL-AVNSDVLVVCCALTEQT  144 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~~~l~el-~~~aDiv~~~~p~t~~t  144 (223)
                      .++.||+|.|+|.|..+++++..|...|.+|.+++|+.++.+         ......++++. ..++|+|+.++|..-..
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~~   93 (170)
T d1nyta1          14 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG   93 (170)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGT
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCccc
Confidence            457899999999999999999999999999999999875432         11112233332 46799999999866432


Q ss_pred             hhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          145 HHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      .  .....+..++++.+++++--.+. .+.-|..|-+.|
T Consensus        94 ~--~~~~~~~~~~~~~~v~D~vY~P~-~T~ll~~A~~~G  129 (170)
T d1nyta1          94 D--IPAIPSSLIHPGIYCYDMFYQKG-KTPFLAWCEQRG  129 (170)
T ss_dssp             C--CCCCCGGGCCTTCEEEESCCCSS-CCHHHHHHHHTT
T ss_pred             C--CCCCcHHHhccCcEEEEeecCCC-CCHHHHHHHHcC
Confidence            2  12223456788999999876664 334444444544

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.98  E-value=1.9e-06  Score=64.78  Aligned_cols=84  Identities=11%  Similarity=0.124  Sum_probs=58.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCC--------------cccccChhhhhcCCcEEEEeccCChh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVL--------------FPYCANVYDLAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~--------------~~~~~~l~el~~~aDiv~~~~p~t~~  143 (223)
                      ++|+|.|||.|.||+.+|+.|...|++|+++||+......              ......+++.+...|+++.++|....
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence            4799999999999999999999999999999998764320              01123455678899999988874422


Q ss_pred             hhhccCHHHHhcCCCCcEEEEcC
Q 035615          144 THHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      ..  +   .....+.+..+++++
T Consensus        81 ~~--~---~~~~~~~~~~~~~~~   98 (182)
T d1e5qa1          81 AT--V---IKSAIRQKKHVVTTS   98 (182)
T ss_dssp             HH--H---HHHHHHHTCEEECSS
T ss_pred             hH--H---HHHHHhhccceeecc
Confidence            11  1   112234456666665

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=9.8e-06  Score=57.51  Aligned_cols=38  Identities=21%  Similarity=0.246  Sum_probs=34.4

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      ..+.||||+|-|..|+.++..++.+|++++++|+++..
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            35678999999999999999999999999999988764

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.92  E-value=9.7e-05  Score=58.91  Aligned_cols=108  Identities=16%  Similarity=0.117  Sum_probs=77.6

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHH-hCCCEEEEEcCCCC------CC---------------CC--cccccChhhhhc-
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQ-AFGFIISYNSRRKR------PS---------------VL--FPYCANVYDLAV-  129 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~------~~---------------~~--~~~~~~l~el~~-  129 (223)
                      .+++|+||.|=|+|++|+.+|+.|. ..|++|++++.+..      ..               ..  .....+.++++. 
T Consensus        27 ~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (234)
T d1b26a1          27 IDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLEL  106 (234)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHHTS
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeecccccccc
Confidence            4589999999999999999999994 68999886653211      00               00  011235566765 


Q ss_pred             CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee
Q 035615          130 NSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD  191 (223)
Q Consensus       130 ~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD  191 (223)
                      .||+++-|.     ..+.|+++....++- .+++-.+.+.+-. ++ .+.|.++.|. +.=|
T Consensus       107 ~~DI~~PcA-----~~~~I~~~~a~~l~~-~~I~e~AN~p~t~-~a-~~~L~~rgI~-~~PD  159 (234)
T d1b26a1         107 DVDILVPAA-----LEGAIHAGNAERIKA-KAVVEGANGPTTP-EA-DEILSRRGIL-VVPD  159 (234)
T ss_dssp             CCSEEEECS-----CTTCBCHHHHTTCCC-SEEECCSSSCBCH-HH-HHHHHHTTCE-EECH
T ss_pred             ccceeecch-----hcccccHHHHHHhhh-ceEeecCCCCCCH-HH-HHHHHHCCeE-Eech
Confidence            899998764     567899999999985 5788888888754 44 4778887776 3434

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.89  E-value=4.9e-05  Score=62.55  Aligned_cols=104  Identities=13%  Similarity=0.184  Sum_probs=74.4

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC---CCC------------------c-ccccChhhhhc-CC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP---SVL------------------F-PYCANVYDLAV-NS  131 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~---~~~------------------~-~~~~~l~el~~-~a  131 (223)
                      .+|.|+||.|=|+|++|+.+|+.|...|++|++++.+...   ..+                  + ....+.++++. .|
T Consensus        32 ~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (293)
T d1hwxa1          32 PGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDC  111 (293)
T ss_dssp             SSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCCc
Confidence            4699999999999999999999999999998876532210   000                  0 00112234554 89


Q ss_pred             cEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          132 DVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       132 Div~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      |+++-|.     +.+.|+.+....++- .+++-.+.+++- .++ .+.|.++.+.
T Consensus       112 DIliPaA-----~~~~I~~~~a~~l~a-k~I~EgAN~P~t-~eA-~~~L~~~gI~  158 (293)
T d1hwxa1         112 DILIPAA-----SEKQLTKSNAPRVKA-KIIAEGANGPTT-PQA-DKIFLERNIM  158 (293)
T ss_dssp             SEEEECS-----SSSCBCTTTGGGCCC-SEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             cEEeecc-----ccccccHHHHHHHhh-CEEeccCCCCCC-cch-HHHHHHCCCE
Confidence            9998775     577888888888865 578899999964 444 4678777775

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=1.3e-05  Score=61.48  Aligned_cols=106  Identities=14%  Similarity=0.114  Sum_probs=71.5

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCCc--------------c------cccChhhhhcCCcE
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLF--------------P------YCANVYDLAVNSDV  133 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~--------------~------~~~~l~el~~~aDi  133 (223)
                      .++++++|.|+|.|..|++++..|...|. +++.++|+++.....              .      ...++.+.+..+|+
T Consensus        14 ~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di   93 (182)
T d1vi2a1          14 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADI   93 (182)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccce
Confidence            46899999999999999999999999998 588899987643210              0      01234456789999


Q ss_pred             EEEeccCChhh---hhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 035615          134 LVVCCALTEQT---HHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGD  184 (223)
Q Consensus       134 v~~~~p~t~~t---~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~  184 (223)
                      |+.+.|.....   ..++.  .+..++++.+++++.-.+. . ..|.+..++..
T Consensus        94 iIN~Tp~G~~~~~~~~~~~--~~~~~~~~~~v~Di~Y~p~-~-T~ll~~a~~~g  143 (182)
T d1vi2a1          94 LTNGTKVGMKPLENESLVN--DISLLHPGLLVTECVYNPH-M-TKLLQQAQQAG  143 (182)
T ss_dssp             EEECSSTTSTTSCSCCSCC--CGGGSCTTCEEEECCCSSS-S-CHHHHHHHTTT
T ss_pred             eccccCCccccccchhhhh--HHHhhhcchhhHHhhcCcc-c-cHHHHHHHHCc
Confidence            99999965321   11211  2356788999999975433 2 23444444433

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.85  E-value=0.00015  Score=58.05  Aligned_cols=103  Identities=20%  Similarity=0.268  Sum_probs=74.1

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHH-hCCCEEEEEcCCCCC---------------------CCCc--ccccChhhhh-cC
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQ-AFGFIISYNSRRKRP---------------------SVLF--PYCANVYDLA-VN  130 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~---------------------~~~~--~~~~~l~el~-~~  130 (223)
                      .|+|+||.|-|+|++|+.+|+.|. .+|.+|+.++.+...                     ...+  ....+.++++ ..
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~  108 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELE  108 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHSC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeeeccccccccc
Confidence            389999999999999999999885 689998866433211                     0011  1123455655 48


Q ss_pred             CcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      ||+++-|.     +.+.|+.+..+.++- .+++-.+.+++.. ++ .+.|.++.|.
T Consensus       109 ~DIl~PcA-----~~~~I~~~~a~~i~a-k~I~e~AN~p~t~-ea-~~~L~~rgI~  156 (239)
T d1gtma1         109 VDVLAPAA-----IEEVITKKNADNIKA-KIVAEVANGPVTP-EA-DEILFEKGIL  156 (239)
T ss_dssp             CSEEEECS-----CSCCBCTTGGGGCCC-SEEECCSSSCBCH-HH-HHHHHHTTCE
T ss_pred             ccEEeecc-----ccccccHHHHHhccc-cEEEecCCCCCCH-HH-HHHHHHCCCE
Confidence            99998876     467888888888865 5788889999754 44 4778877776

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.84  E-value=8.7e-06  Score=59.05  Aligned_cols=82  Identities=16%  Similarity=0.144  Sum_probs=55.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------Ccc-------cccChhhh-hcCCcEEEEeccCChhhh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFP-------YCANVYDL-AVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~-------~~~~l~el-~~~aDiv~~~~p~t~~t~  145 (223)
                      ++|.|+|+|++|+.+++.|...|.+|++.|.+++...      +..       ....++++ ++++|.++.+++..+.  
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~--   78 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV--   78 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHH--
Confidence            5899999999999999999999999999988765321      111       11223333 6889999887764432  


Q ss_pred             hccCHHHHhcCCCCcEEE
Q 035615          146 HIINKDVMAELGKGGMII  163 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lI  163 (223)
                      .++-....+.+.+..++.
T Consensus        79 N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          79 NLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             HHHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHHHHHcCCceEEE
Confidence            233344555666665554

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.82  E-value=3.3e-05  Score=55.05  Aligned_cols=100  Identities=16%  Similarity=0.253  Sum_probs=74.9

Q ss_pred             CEEEEEe----cChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhc
Q 035615           80 MQVGIVR----LGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE  155 (223)
Q Consensus        80 ~~vgIiG----~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~  155 (223)
                      |+|+|||    -|+.|..+.+.|+..|++|+.+++..+...+...+.++.++-..-|++++++| .+.+..++. +..+ 
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vvi~vp-~~~~~~~l~-~~~~-   78 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVAK-EAVE-   78 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHHH-HHHH-
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchhccccceEEEEEeC-HHHHHHHHH-HHHh-
Confidence            6899999    47899999999999999999999887666677778899999888999999998 334455553 3333 


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          156 LGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       156 mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      +...++++..+   . ..+.+.+.+++..+.
T Consensus        79 ~g~k~v~~~~g---~-~~~~~~~~a~~~gi~  105 (116)
T d1y81a1          79 AGFKKLWFQPG---A-ESEEIRRFLEKAGVE  105 (116)
T ss_dssp             TTCCEEEECTT---S-CCHHHHHHHHHHTCE
T ss_pred             cCCceEEeccc---h-hhHHHHHHHHHcCCE
Confidence            44556666543   2 344567777777675

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.79  E-value=1.7e-05  Score=61.10  Aligned_cols=42  Identities=17%  Similarity=0.195  Sum_probs=37.7

Q ss_pred             CccccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           73 LGFKLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        73 ~~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      .+.+|+||++.|.| -|.||+.+|+.|...|++|+..+|+.++
T Consensus        17 ~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~   59 (191)
T d1luaa1          17 AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDK   59 (191)
T ss_dssp             TTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHH
Confidence            35679999999999 6999999999999999999999988644

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.75  E-value=1.5e-05  Score=60.06  Aligned_cols=86  Identities=26%  Similarity=0.237  Sum_probs=58.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc---c---cC-hhhhhcCCcEEEEeccCChhhh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY---C---AN-VYDLAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~---~---~~-l~el~~~aDiv~~~~p~t~~t~  145 (223)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++.+.+     ++..   .   .+ .+......|+++.++.....  
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~--  104 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTD--  104 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTT--
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCcc--
Confidence            489999999999999999999999999999998876532     2211   1   11 22334567888877653211  


Q ss_pred             hccCHHHHhcCCCCcEEEEcC
Q 035615          146 HIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~a  166 (223)
                      ..+ ...++.++++..++.++
T Consensus       105 ~~~-~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2         105 IDF-NIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             CCT-TTGGGGEEEEEEEEECC
T ss_pred             chH-HHHHHHhhccceEEEec
Confidence            112 34566677777777775

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=3e-05  Score=58.05  Aligned_cols=102  Identities=18%  Similarity=0.342  Sum_probs=63.8

Q ss_pred             CEEEEEecChHHHH-HHHHHHhC-CCEEE-EEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615           80 MQVGIVRLGNIGSE-VLNRLQAF-GFIIS-YNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK  150 (223)
Q Consensus        80 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~  150 (223)
                      .+|||||+|.+|+. ....++.. ++++. ++|++++...      +...+.++++++++.|+|++++|........  .
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~~~--~   79 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVV--S   79 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHH--H
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhccccc--c
Confidence            47999999999986 46666654 67765 6788776532      3345678899999999999999854322221  2


Q ss_pred             HHHhcCCCC-cEEEEc-CCCcccCHHHHHHHHHcCCce
Q 035615          151 DVMAELGKG-GMIINV-GRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       151 ~~l~~mk~g-a~lIN~-arg~~vd~~al~~aL~~~~i~  186 (223)
                      ..++   .| .+++.- ---.+-+...|.++.++.++.
T Consensus        80 ~al~---~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~  114 (164)
T d1tlta1          80 TLLN---AGVHVCVDKPLAENLRDAERLVELAARKKLT  114 (164)
T ss_dssp             HHHH---TTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             cccc---ccceeeccccccCCHHHHHHHHHHHHHcCCc
Confidence            2332   23 244432 112234556666666665543

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.69  E-value=5.3e-05  Score=56.59  Aligned_cols=91  Identities=14%  Similarity=0.066  Sum_probs=60.6

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------------Cc----ccccChhhhhcCCcEEEEecc
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------------LF----PYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~~----~~~~~l~el~~~aDiv~~~~p  139 (223)
                      +.+||+|||.|.+|+.+|..+...+. +++.+|..+....             ..    ....+.++.++.||+|+++..
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag   85 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   85 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence            46899999999999999988877665 7889997765322             00    112456678899999999874


Q ss_pred             CC--hh------hhh-cc--C-------HHHHhcCCCCcEEEEcCCC
Q 035615          140 LT--EQ------THH-II--N-------KDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       140 ~t--~~------t~~-li--~-------~~~l~~mk~ga~lIN~arg  168 (223)
                      ..  +.      ++. ++  |       .+.+....|.+++++++.-
T Consensus        86 ~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNP  132 (154)
T d1pzga1          86 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP  132 (154)
T ss_dssp             CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             cccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            21  11      221 11  1       1224445688999998653

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.65  E-value=3.6e-05  Score=57.11  Aligned_cols=88  Identities=18%  Similarity=0.269  Sum_probs=57.0

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC-------------Cc--ccccChhhhhcCCcEEEEeccCCh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV-------------LF--PYCANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-------------~~--~~~~~l~el~~~aDiv~~~~p~t~  142 (223)
                      |||+|||.|.+|..+|-.+...|.  ++..+|.......             ..  ....+-.+.++.||+|+++.....
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~   81 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK   81 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccccc
Confidence            799999999999999998876664  7889997654321             00  011223356799999999865321


Q ss_pred             -------hhhh-cc--C-------HHHHhcCCCCcEEEEcCC
Q 035615          143 -------QTHH-II--N-------KDVMAELGKGGMIINVGR  167 (223)
Q Consensus       143 -------~t~~-li--~-------~~~l~~mk~ga~lIN~ar  167 (223)
                             .++. ++  |       .+.+....|.+++|+++.
T Consensus        82 ~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  123 (146)
T d1hyha1          82 LQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISN  123 (146)
T ss_dssp             GTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             cccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecC
Confidence                   1121 11  1       123445578899999864

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.65  E-value=4e-05  Score=56.91  Aligned_cols=91  Identities=19%  Similarity=0.334  Sum_probs=59.0

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC---------------CcccccChhhhhcCCcEEEEecc
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV---------------LFPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~---------------~~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      -.++||+|||.|.+|..+|..+...|.  ++..+|+.+....               ......+-.+.++.||+|+++..
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag   83 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG   83 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence            357899999999999999999887665  7999998654311               11112334467889999999864


Q ss_pred             CCh--h-hh-hcc--C-------HHHHhcCCCCcEEEEcCC
Q 035615          140 LTE--Q-TH-HII--N-------KDVMAELGKGGMIINVGR  167 (223)
Q Consensus       140 ~t~--~-t~-~li--~-------~~~l~~mk~ga~lIN~ar  167 (223)
                      ...  . ++ .++  |       .+.+....|.+++|+++.
T Consensus        84 ~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtN  124 (148)
T d1ldna1          84 ANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (148)
T ss_dssp             CCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             cccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence            321  1 11 111  1       123344567899999853

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.64  E-value=1.1e-05  Score=61.45  Aligned_cols=106  Identities=12%  Similarity=-0.061  Sum_probs=64.1

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCC----------cccccChhhhhcCCcEEEEeccCChhhh
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVL----------FPYCANVYDLAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~----------~~~~~~l~el~~~aDiv~~~~p~t~~t~  145 (223)
                      .+.|++|.|+|.|..+++++..|...+.+|++++|+.++.+.          .......+..+.++|+|+.++|..-...
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g~~~~   94 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSGG   94 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-----
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccccccc
Confidence            478999999999999999999998877889999998754321          1111111223578999999998653211


Q ss_pred             hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          146 HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      .  .......++++..++++.=.......-|..|-+.|
T Consensus        95 ~--~~~~~~~~~~~~~~~D~vy~~p~~T~~l~~A~~~g  130 (171)
T d1p77a1          95 T--ASVDAEILKLGSAFYDMQYAKGTDTPFIALCKSLG  130 (171)
T ss_dssp             ----CCCHHHHHHCSCEEESCCCTTSCCHHHHHHHHTT
T ss_pred             c--cchhhhhhcccceeeeeeccCcccHHHHHHHHHcC
Confidence            1  11112234556667776544433344444444444

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.63  E-value=6.2e-05  Score=55.32  Aligned_cols=88  Identities=20%  Similarity=0.254  Sum_probs=58.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC---------------Cc-ccccChhhhhcCCcEEEEec--c
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV---------------LF-PYCANVYDLAVNSDVLVVCC--A  139 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~---------------~~-~~~~~l~el~~~aDiv~~~~--p  139 (223)
                      +||+|||.|.+|..+|..+...|.  ++..+|..+....               .. ....+..+.+++||+|+++.  |
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~   80 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence            589999999999999999987774  7999998775421               01 11234456789999999986  3


Q ss_pred             CChh-hhh--------ccC--HHHHhcCCCCcEEEEcCC
Q 035615          140 LTEQ-THH--------IIN--KDVMAELGKGGMIINVGR  167 (223)
Q Consensus       140 ~t~~-t~~--------li~--~~~l~~mk~ga~lIN~ar  167 (223)
                      ..+. ++.        ++.  .+.+....|.+++++++.
T Consensus        81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1guza1          81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN  119 (142)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence            3331 111        110  123344468899999865

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=5.1e-05  Score=58.61  Aligned_cols=63  Identities=16%  Similarity=0.164  Sum_probs=49.6

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----C-------cccccChhhhhcCCcEEEEeccC
Q 035615           78 GGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----L-------FPYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~-------~~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      ..|+|.|+| .|.||+.+++.|...|++|.++.|++.+..     +       .....+++++++.+|+|+.++..
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~   77 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence            468999999 699999999999999999999988765432     1       11234567789999999988854

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.57  E-value=2.7e-05  Score=65.58  Aligned_cols=85  Identities=15%  Similarity=0.151  Sum_probs=65.5

Q ss_pred             CCEEEEEecChHHHHHHHHHH-hCCC-EEEEEcCCCCCCC----------C--cccccChhhhhcCCcEEEEeccCChhh
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQ-AFGF-IISYNSRRKRPSV----------L--FPYCANVYDLAVNSDVLVVCCALTEQT  144 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDiv~~~~p~t~~t  144 (223)
                      -++++|||.|..++.-++.+. -++. +|.+|+|+++...          +  +..+.+++++++.||+|+.+++ ++.+
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Ta-s~s~  206 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTA-DKAY  206 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC-CSSE
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccc-cCCC
Confidence            478999999999998888664 5676 5899999865321          1  2236789999999999998886 4455


Q ss_pred             hhccCHHHHhcCCCCcEEEEcCC
Q 035615          145 HHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       145 ~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      ..+++.+   .+|||+.+..+|.
T Consensus       207 ~Pv~~~~---~l~pG~hI~aiGs  226 (340)
T d1x7da_         207 ATIITPD---MLEPGMHLNAVGG  226 (340)
T ss_dssp             EEEECGG---GCCTTCEEEECSC
T ss_pred             Ccccchh---hcCCCCEEeeccc
Confidence            6788765   4699999888875

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=3.6e-05  Score=50.95  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=32.4

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      |||||+|-|..|++++...+.+|+++.++|+....
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            79999999999999999999999999999987643

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.56  E-value=7e-05  Score=55.42  Aligned_cols=89  Identities=15%  Similarity=0.183  Sum_probs=57.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCC--CEEEEEcCCCCCCC-------------C-cc-cccChhhhhcCCcEEEEeccC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFG--FIISYNSRRKRPSV-------------L-FP-YCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~-------------~-~~-~~~~l~el~~~aDiv~~~~p~  140 (223)
                      ..+||+|||.|.+|..+|..|...|  -++..+|+..+...             . .. ...+.+ .++.||+|+++...
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-~~~~adivvitag~   82 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-DCKDADLVVITAGA   82 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-GGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-HhccccEEEEeccc
Confidence            4679999999999999999998766  48999998764211             0 01 123444 46899999998632


Q ss_pred             C--h-hhh--------hccC--HHHHhcCCCCcEEEEcCC
Q 035615          141 T--E-QTH--------HIIN--KDVMAELGKGGMIINVGR  167 (223)
Q Consensus       141 t--~-~t~--------~li~--~~~l~~mk~ga~lIN~ar  167 (223)
                      .  + .++        .++.  .+.+..-.|.+++|+++.
T Consensus        83 ~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN  122 (146)
T d1ez4a1          83 PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (146)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence            1  1 111        1111  123445578899999874

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.55  E-value=0.00015  Score=53.34  Aligned_cols=88  Identities=18%  Similarity=0.204  Sum_probs=54.6

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC-------Cc-------ccccChhhhhcCCcEEEEeccCCh-
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV-------LF-------PYCANVYDLAVNSDVLVVCCALTE-  142 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-------~~-------~~~~~l~el~~~aDiv~~~~p~t~-  142 (223)
                      +||+|||.|.+|..+|-.+...+.  ++..+|+......       ..       .......+.++.||+|+++..... 
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   81 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK   81 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence            479999999999999998877665  7999998776532       00       012223456789999999853221 


Q ss_pred             --hhh-hcc--C-------HHHHhcCCCCcEEEEcCC
Q 035615          143 --QTH-HII--N-------KDVMAELGKGGMIINVGR  167 (223)
Q Consensus       143 --~t~-~li--~-------~~~l~~mk~ga~lIN~ar  167 (223)
                        +++ .++  |       .+.+....|.+++|+++.
T Consensus        82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  118 (142)
T d1y6ja1          82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN  118 (142)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred             cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC
Confidence              111 111  1       123444568899999865

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.54  E-value=0.00071  Score=50.57  Aligned_cols=98  Identities=15%  Similarity=0.167  Sum_probs=71.5

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------CcccccChhhhhcCCcEEEEecc
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------LFPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      |.|+||++||= .++.++.+..+..||+++.+..+..-...                ......++++.++.+|+|....=
T Consensus         2 l~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~~   81 (163)
T d1pvva2           2 IKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVW   81 (163)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecce
Confidence            78999999994 56889999999999999998877532211                12235688999999999986531


Q ss_pred             C------C-hh-----hhhccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 035615          140 L------T-EQ-----THHIINKDVMAELGKGGMIINVG---RGALIDEK  174 (223)
Q Consensus       140 ~------t-~~-----t~~li~~~~l~~mk~ga~lIN~a---rg~~vd~~  174 (223)
                      .      . +.     ....++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHplP~~Rg~EI~~~  131 (163)
T d1pvva2          82 ASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDD  131 (163)
T ss_dssp             CCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             eecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCCccccccccchh
Confidence            1      1 11     22467899999999999999887   45545443

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.51  E-value=0.00033  Score=51.95  Aligned_cols=93  Identities=17%  Similarity=0.201  Sum_probs=65.9

Q ss_pred             cCCCEEEEEec---ChHHHHHHHHHHhCCCEEEEEcCCCC-CC---------CCcccccChhhhhcCCcEEEEeccCCh-
Q 035615           77 LGGMQVGIVRL---GNIGSEVLNRLQAFGFIISYNSRRKR-PS---------VLFPYCANVYDLAVNSDVLVVCCALTE-  142 (223)
Q Consensus        77 l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~~-~~---------~~~~~~~~l~el~~~aDiv~~~~p~t~-  142 (223)
                      |.|++|++||=   |++.++++..+..||+++.++.+... +.         ..+....++++.++.+|+|...--... 
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~   80 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER   80 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence            57999999994   66999999999999998765433221 11         123345789999999999876421110 


Q ss_pred             ----------hhhhccCHHHHhcCCCCcEEEEcC-CCc
Q 035615          143 ----------QTHHIINKDVMAELGKGGMIINVG-RGA  169 (223)
Q Consensus       143 ----------~t~~li~~~~l~~mk~ga~lIN~a-rg~  169 (223)
                                .....++.+.++.+|++++|.-+. ||.
T Consensus        81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~LPR~~  118 (153)
T d1pg5a2          81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLPRVN  118 (153)
T ss_dssp             SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCSCCSS
T ss_pred             ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCCCCcC
Confidence                      122346889999999999998776 444

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.50  E-value=2e-05  Score=59.99  Aligned_cols=107  Identities=9%  Similarity=0.009  Sum_probs=71.0

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc---------------ccccChhhhhcCCcEEEEecc
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF---------------PYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~---------------~~~~~l~el~~~aDiv~~~~p  139 (223)
                      .+++||+|.|+|.|..+++++..|...| +|.+++|+.++.+..               ....+++..+..+|+++.+.|
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp   92 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP   92 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCc
Confidence            3589999999999999999999998877 899999987653210               123456667788999999998


Q ss_pred             CChhhh-hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 035615          140 LTEQTH-HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGD  184 (223)
Q Consensus       140 ~t~~t~-~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~  184 (223)
                      ...... ..-..-.+..++++.+++++.-.+..  ..|.+..++..
T Consensus        93 ~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~--T~l~~~a~~~G  136 (177)
T d1nvta1          93 IGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLE--TVLLKEAKKVN  136 (177)
T ss_dssp             TTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSS--CHHHHHHHTTT
T ss_pred             ccccccccccchhhhhccCcccceeeecCCcHh--HHHHHHHHHCC
Confidence            542211 11001123456778888888654433  33444444443

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.49  E-value=7e-05  Score=54.29  Aligned_cols=107  Identities=15%  Similarity=0.218  Sum_probs=74.6

Q ss_pred             cCCCEEEEEec----ChHHHHHHHHHHhCC-CEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHH
Q 035615           77 LGGMQVGIVRL----GNIGSEVLNRLQAFG-FIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        77 l~g~~vgIiG~----G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~  151 (223)
                      ++-++|+|||.    |+.|..+.+.|+..| .+|+.+++..+...+...+.++.|+-..-|++++++| .+.+..++. +
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~G~~~y~sl~dlp~~vDlvvi~vp-~~~~~~~~~-~   83 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVP-KRFVKDTLI-Q   83 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSC-HHHHHHHHH-H
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccCCeEeecchhhcCCCCceEEEecC-hHHhHHHHH-H
Confidence            56789999996    899999999998765 6899999987776777778999999889999999998 445555653 3


Q ss_pred             HHhcCCCCc-EEEEcCCCcc-----cCHHHHHHHHHcCCce
Q 035615          152 VMAELGKGG-MIINVGRGAL-----IDEKEMLQFLVQGDIN  186 (223)
Q Consensus       152 ~l~~mk~ga-~lIN~arg~~-----vd~~al~~aL~~~~i~  186 (223)
                      ..+ ..-.+ +++.-+-++.     ..++.|.+..++..++
T Consensus        84 ~~~-~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gir  123 (129)
T d2csua1          84 CGE-KGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMR  123 (129)
T ss_dssp             HHH-HTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHH-cCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCE
Confidence            332 23333 3433332332     2334566666655444

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=97.46  E-value=0.00033  Score=50.97  Aligned_cols=102  Identities=16%  Similarity=0.122  Sum_probs=73.2

Q ss_pred             CCCEEEEEec----ChHHHHHHHHHHhCCCEEEEEcCCCCC--CCCcccccChhhhhcCCcEEEEeccCChhhhhccCHH
Q 035615           78 GGMQVGIVRL----GNIGSEVLNRLQAFGFIISYNSRRKRP--SVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        78 ~g~~vgIiG~----G~iG~~~a~~l~~~G~~V~~~~~~~~~--~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~  151 (223)
                      .-|+|+|||.    ++.|..+.+.|+..|+++..+++.+..  ..+...+.++.++-..-|++++++| .+.+..++. +
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v~-~   89 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRP-PSALMDHLP-E   89 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSC-HHHHTTTHH-H
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccceeeceecccchhhccCCCceEEEecc-HHHHHHHHH-H
Confidence            5689999996    889999999999999999988876543  2355567889998888999999998 344555553 3


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      .. .+...++++..+   ..++++ .+..++..+.
T Consensus        90 ~~-~~g~k~i~~q~G---~~~~e~-~~~a~~~Gi~  119 (136)
T d1iuka_          90 VL-ALRPGLVWLQSG---IRHPEF-EKALKEAGIP  119 (136)
T ss_dssp             HH-HHCCSCEEECTT---CCCHHH-HHHHHHTTCC
T ss_pred             HH-hhCCCeEEEecC---ccCHHH-HHHHHHcCCE
Confidence            33 345667777654   345554 4555554454

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.46  E-value=0.00014  Score=54.39  Aligned_cols=86  Identities=21%  Similarity=0.225  Sum_probs=59.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc-------ccChhh---hh-----cCCcEEEEe
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY-------CANVYD---LA-----VNSDVLVVC  137 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~-------~~~l~e---l~-----~~aDiv~~~  137 (223)
                      .|.+|.|+|.|.||...++.++.+|++|+++++++.+.+     ++..       ..+..+   .+     ...|+|+-+
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~  105 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  105 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeec
Confidence            478999999999999999999999999999998765432     1110       111111   11     347888877


Q ss_pred             ccCChhhhhccCHHHHhcCCCCcEEEEcCCC
Q 035615          138 CALTEQTHHIINKDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       138 ~p~t~~t~~li~~~~l~~mk~ga~lIN~arg  168 (223)
                      +. .+.+   + ...++.++++..++.++-.
T Consensus       106 ~g-~~~~---~-~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2         106 SG-NEKC---I-TIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             SC-CHHH---H-HHHHHHSCTTCEEEECSCC
T ss_pred             CC-ChHH---H-HHHHHHHhcCCceEEEecC
Confidence            75 3222   2 3456778888888888754

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.42  E-value=0.00019  Score=53.24  Aligned_cols=90  Identities=18%  Similarity=0.193  Sum_probs=58.6

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------------Cc---ccccChhhhhcCCcEEEEeccCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------------LF---PYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~~---~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      ..||+|||.|.+|+.+|-.+...+. ++..||+.+....             ..   ....+..+.++.||+|+++....
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~   82 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT   82 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence            4689999999999999988876665 6889998765422             00   11134456788999999987432


Q ss_pred             hh---h-----hh-cc--CHH-------HHhcCCCCcEEEEcCCC
Q 035615          142 EQ---T-----HH-II--NKD-------VMAELGKGGMIINVGRG  168 (223)
Q Consensus       142 ~~---t-----~~-li--~~~-------~l~~mk~ga~lIN~arg  168 (223)
                      ..   +     +- ++  |.+       .+....|++++++++.-
T Consensus        83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP  127 (150)
T d1t2da1          83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP  127 (150)
T ss_dssp             SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            11   1     11 11  211       23444689999998654

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.41  E-value=8.3e-05  Score=61.94  Aligned_cols=84  Identities=17%  Similarity=0.218  Sum_probs=64.6

Q ss_pred             CCEEEEEecChHHHHHHHHHHh-CCC-EEEEEcCCCCCCC---------CcccccChhhhhcCCcEEEEeccCChhhhhc
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQA-FGF-IISYNSRRKRPSV---------LFPYCANVYDLAVNSDVLVVCCALTEQTHHI  147 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~---------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~l  147 (223)
                      -++++|||.|..++.-++.+.. +.. +|.+|+|+++...         ......+.++.+..||+|+.++|   ++..+
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~---s~~P~  201 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTP---SRKPV  201 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCC---CSSCC
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEecc---Ccccc
Confidence            4689999999999999988764 565 6999999875432         22234567788899999998876   45777


Q ss_pred             cCHHHHhcCCCCcEEEEcCCC
Q 035615          148 INKDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       148 i~~~~l~~mk~ga~lIN~arg  168 (223)
                      ++.+   .+|+|+.++.++.-
T Consensus       202 ~~~~---~l~~G~hv~~iGs~  219 (320)
T d1omoa_         202 VKAE---WVEEGTHINAIGAD  219 (320)
T ss_dssp             BCGG---GCCTTCEEEECSCC
T ss_pred             cchh---hcCCCCeEeecCCc
Confidence            8765   46999999999853

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.41  E-value=5e-05  Score=56.87  Aligned_cols=35  Identities=34%  Similarity=0.558  Sum_probs=32.2

Q ss_pred             CEEEEE-ecChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           80 MQVGIV-RLGNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        80 ~~vgIi-G~G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      +||+|| |.|.||+++|++|...|++|.+++|++++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~   36 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEK   36 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            589999 79999999999999999999999998654

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.41  E-value=0.00055  Score=50.02  Aligned_cols=102  Identities=9%  Similarity=0.054  Sum_probs=74.5

Q ss_pred             CCCEEEEEec----ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           78 GGMQVGIVRL----GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        78 ~g~~vgIiG~----G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      +-++|+|||.    ++.|..+++.|+.+|++|+.+++......+...+.++.++-..-|++++++|. +.+..++. +..
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i~vp~-~~~~~~~~-e~~   95 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE-QAI   95 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH-HHH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCccceEEEEEeCH-HHHHHHHH-HHH
Confidence            5789999995    68999999999999999999998876666777788999998899999999982 33444443 333


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      + +....+++..+   ..+++ +.+.+++..+.
T Consensus        96 ~-~g~k~v~~~~G---~~~ee-~~~~a~~~gi~  123 (139)
T d2d59a1          96 K-KGAKVVWFQYN---TYNRE-ASKKADEAGLI  123 (139)
T ss_dssp             H-HTCSEEEECTT---CCCHH-HHHHHHHTTCE
T ss_pred             H-hCCCEEEEecc---ccCHH-HHHHHHHCCCE
Confidence            2 35556666554   23454 45555555554

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.39  E-value=9.3e-05  Score=54.31  Aligned_cols=88  Identities=24%  Similarity=0.305  Sum_probs=57.0

Q ss_pred             CEEEEEecChHHHHHHHHHHhCC--CEEEEEcCCCCCCC--------------CcccccChhhhhcCCcEEEEeccC--C
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFG--FIISYNSRRKRPSV--------------LFPYCANVYDLAVNSDVLVVCCAL--T  141 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~--------------~~~~~~~l~el~~~aDiv~~~~p~--t  141 (223)
                      +||+|||.|.+|..+|-.+...+  -++..+|.......              ......+..+.++.||+|+++...  .
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   80 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK   80 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence            58999999999999998876554  47999997754321              011123334568999999998632  2


Q ss_pred             hh-hh-hcc--C-------HHHHhcCCCCcEEEEcCC
Q 035615          142 EQ-TH-HII--N-------KDVMAELGKGGMIINVGR  167 (223)
Q Consensus       142 ~~-t~-~li--~-------~~~l~~mk~ga~lIN~ar  167 (223)
                      +. ++ .++  |       .+.+....|++++++++.
T Consensus        81 ~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtN  117 (140)
T d1a5za1          81 PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN  117 (140)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCC
Confidence            11 11 111  1       133455578999999874

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.39  E-value=6.6e-05  Score=56.63  Aligned_cols=99  Identities=12%  Similarity=0.212  Sum_probs=64.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCC--hhh---h
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALT--EQT---H  145 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t--~~t---~  145 (223)
                      ++++|.|+|.|..+++++..|+..|+ +|.+++|+.++.+      +.....+.  -..++|+|+.++|..  +..   .
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~--~~~~~DliINaTpiGm~~~~~~~~   93 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSL--ENQQADILVNVTSIGMKGGKEEMD   93 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCC--TTCCCSEEEECSSTTCTTSTTTTS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcc--cccchhhheeccccCCcccccccc
Confidence            57899999999999999999999998 6899999876432      11111111  135799999999853  111   1


Q ss_pred             hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          146 HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                      -.++...   ++++.+++++--.+.. .. |++..++.
T Consensus        94 l~~~~~~---~~~~~~v~D~vY~P~~-T~-ll~~A~~~  126 (167)
T d1npya1          94 LAFPKAF---IDNASVAFDVVAMPVE-TP-FIRYAQAR  126 (167)
T ss_dssp             CSSCHHH---HHHCSEEEECCCSSSS-CH-HHHHHHHT
T ss_pred             ccccHhh---cCCcceEEEEeeccCC-CH-HHHHHHHC
Confidence            1233333   3467788888665532 22 44444443

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=97.39  E-value=0.00061  Score=54.81  Aligned_cols=106  Identities=14%  Similarity=0.113  Sum_probs=71.0

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcC--------CCCCCC--------------C-c--------ccccC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSR--------RKRPSV--------------L-F--------PYCAN  123 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~--------~~~~~~--------------~-~--------~~~~~  123 (223)
                      .+|+|+||.|=|+|++|+.+|+.|...|++|+.++.        ..-...              . .        ....+
T Consensus        32 ~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (255)
T d1bgva1          32 DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFP  111 (255)
T ss_dssp             CCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceeec
Confidence            458899999999999999999999999999876432        211100              0 0        00112


Q ss_pred             hhhhh-cCCcEEEEeccCChhhhhccCHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          124 VYDLA-VNSDVLVVCCALTEQTHHIINKDVMAELGK-GG-MIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       124 l~el~-~~aDiv~~~~p~t~~t~~li~~~~l~~mk~-ga-~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      .++++ ..||+++-|.     +.+.|+.+..+.++. ++ +++--+.+++-++ +....|+++.|.
T Consensus       112 ~~~~~~~~~DiliPcA-----~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~e-a~~~ll~~~gI~  171 (255)
T d1bgva1         112 GEKPWGQKVDIIMPCA-----TQNDVDLEQAKKIVANNVKYYIEVANMPTTNE-ALRFLMQQPNMV  171 (255)
T ss_dssp             TCCGGGSCCSEEECCS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-HHHHHHHCTTCE
T ss_pred             hhhcccccccEEeecc-----ccccccHHHHHhhhhcCceEEecCCCCCcchH-HHHHHHHhcCCE
Confidence            23333 4799987553     577888888887763 33 7778888887665 444456766665

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.38  E-value=7e-05  Score=55.26  Aligned_cols=40  Identities=20%  Similarity=0.287  Sum_probs=35.7

Q ss_pred             CCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCC
Q 035615           72 PLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRR  111 (223)
Q Consensus        72 ~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  111 (223)
                      +...+|+||++.|||.|.+|..-++.|..+|++|.++++.
T Consensus         6 pl~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           6 QLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             EEEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             hhheeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3456799999999999999999999999999999988654

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=97.35  E-value=0.00015  Score=58.04  Aligned_cols=66  Identities=12%  Similarity=0.189  Sum_probs=58.1

Q ss_pred             cccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615          120 YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       120 ~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~  186 (223)
                      ...+..|+++++|+|++++|..+.+..++ ++..+.++++++++|++.........+.+.+++..+.
T Consensus       131 v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~  196 (242)
T d2b0ja2         131 VTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN  196 (242)
T ss_dssp             EESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE
T ss_pred             EECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE
Confidence            35788899999999999999777777777 6788999999999999999988888899999888776

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=0.00013  Score=54.61  Aligned_cols=85  Identities=19%  Similarity=0.228  Sum_probs=61.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc---ccC---hhhhhcCCcEEEEeccCChhhhh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY---CAN---VYDLAVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~---~~~---l~el~~~aDiv~~~~p~t~~t~~  146 (223)
                      .|.+|.|+|.|.+|...++.++.+|+++++.+++.++.+     ++..   +.+   ..+..+..|+++-++.....   
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~---  106 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN---  106 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC---
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchh---
Confidence            389999999999999999999999999888887665432     2211   111   22334568999998863321   


Q ss_pred             ccCHHHHhcCCCCcEEEEcCC
Q 035615          147 IINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       147 li~~~~l~~mk~ga~lIN~ar  167 (223)
                       + ...++.++++..++.++.
T Consensus       107 -~-~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2         107 -L-DDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             -H-HHHHTTEEEEEEEEECCC
T ss_pred             -H-HHHHHHHhcCCEEEEecc
Confidence             1 345678888889998875

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.32  E-value=7e-05  Score=56.98  Aligned_cols=102  Identities=13%  Similarity=0.126  Sum_probs=65.0

Q ss_pred             CEEEEEecChHHHHHHHHHHhC-CCEEE-EEcCCCCCCC----------CcccccChhhhhc--CCcEEEEeccCChhhh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF-GFIIS-YNSRRKRPSV----------LFPYCANVYDLAV--NSDVLVVCCALTEQTH  145 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~----------~~~~~~~l~el~~--~aDiv~~~~p~t~~t~  145 (223)
                      .++||||+|.||+..++.++.. +++|. ++|++++...          ....+.+++++++  +.|+|++++|......
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~   81 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   81 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence            4799999999999999999876 67876 5677654321          1234678999884  5789999998543322


Q ss_pred             hccCHHHHhcCCCCcE-EEEc-CCCcccCHHHHHHHHHcCCce
Q 035615          146 HIINKDVMAELGKGGM-IINV-GRGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~-lIN~-arg~~vd~~al~~aL~~~~i~  186 (223)
                      .     ....++.|.- ++.- .--.+-+.+.|.+..++.++.
T Consensus        82 ~-----~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~  119 (184)
T d1ydwa1          82 W-----AIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  119 (184)
T ss_dssp             H-----HHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             h-----hhhhhhccceeecccccccCHHHHHHHHHHHHhhCCE
Confidence            2     2233444543 3321 112233456677777777765

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00014  Score=54.50  Aligned_cols=86  Identities=21%  Similarity=0.247  Sum_probs=61.2

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----Cccc-----ccChhhhh--------cCCcEEEEec
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----LFPY-----CANVYDLA--------VNSDVLVVCC  138 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~-----~~~l~el~--------~~aDiv~~~~  138 (223)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.+     ++..     ..+..+..        ...|+++-++
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~  105 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  105 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence            37899999999999999999999999 6999988765432     2211     12332221        2579998888


Q ss_pred             cCChhhhhccCHHHHhcCCCCcEEEEcCCC
Q 035615          139 ALTEQTHHIINKDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       139 p~t~~t~~li~~~~l~~mk~ga~lIN~arg  168 (223)
                      +. +.+   + +..++.++++..++.++-.
T Consensus       106 G~-~~~---~-~~a~~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2         106 GA-EAS---I-QAGIYATRSGGTLVLVGLG  130 (171)
T ss_dssp             CC-HHH---H-HHHHHHSCTTCEEEECSCC
T ss_pred             CC-chh---H-HHHHHHhcCCCEEEEEecC
Confidence            63 222   2 4567788999988888753

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.29  E-value=0.00028  Score=52.68  Aligned_cols=86  Identities=15%  Similarity=0.238  Sum_probs=55.4

Q ss_pred             CCEEEEEecChHHHH-HHHHHHhCCC-EEE-EEcCCCCCCC-------Ccc-cccChhhhh-----cCCcEEEEeccCCh
Q 035615           79 GMQVGIVRLGNIGSE-VLNRLQAFGF-IIS-YNSRRKRPSV-------LFP-YCANVYDLA-----VNSDVLVVCCALTE  142 (223)
Q Consensus        79 g~~vgIiG~G~iG~~-~a~~l~~~G~-~V~-~~~~~~~~~~-------~~~-~~~~l~el~-----~~aDiv~~~~p~t~  142 (223)
                      ..++||||.|.||+. +.+.++.+.. ++. +.+|+.....       +.. .+.++++++     .+.|+|++++|...
T Consensus         4 kirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~   83 (157)
T d1nvmb1           4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASA   83 (157)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHH
T ss_pred             CcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchh
Confidence            358999999999986 5678877644 554 5577654211       221 123344443     46789999998443


Q ss_pred             hhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          143 QTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       143 ~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      +..+   +..++..+.|..+|+-+.
T Consensus        84 h~~~---~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          84 HVQN---EALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             HHHH---HHHHHHHCTTCEEEECST
T ss_pred             HHHh---HHHHHHHHcCCEEEEccc
Confidence            3332   345566799999998875

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.28  E-value=0.00038  Score=51.00  Aligned_cols=87  Identities=25%  Similarity=0.244  Sum_probs=54.2

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------------Cc----ccccChhhhhcCCcEEEEeccC-
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------------LF----PYCANVYDLAVNSDVLVVCCAL-  140 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~~----~~~~~l~el~~~aDiv~~~~p~-  140 (223)
                      +||+|||.|.+|..+|-.+...+. ++..+|..+....             ..    ....+. +.+++||+|+++... 
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~-~~~~~advvvitag~~   80 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcH-HHhcCCCEEEEeeecc
Confidence            589999999999999988876555 7888998765321             00    112233 457899999999842 


Q ss_pred             -Chh-hh-hcc--CH-------HHHhcCCCCcEEEEcCC
Q 035615          141 -TEQ-TH-HII--NK-------DVMAELGKGGMIINVGR  167 (223)
Q Consensus       141 -t~~-t~-~li--~~-------~~l~~mk~ga~lIN~ar  167 (223)
                       .+. ++ .++  |.       +.+....|.+++++++.
T Consensus        81 ~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtN  119 (142)
T d1uxja1          81 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  119 (142)
T ss_dssp             ---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSS
T ss_pred             CCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCC
Confidence             221 21 111  11       12334467889998754

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=97.27  E-value=9.5e-05  Score=55.39  Aligned_cols=103  Identities=10%  Similarity=0.140  Sum_probs=63.1

Q ss_pred             CEEEEEecChHHHH-HHHHHHhC-CCEEEEEcCCCCCCC------C-cccccChhhhhc-CCcEEEEeccCChhhhhccC
Q 035615           80 MQVGIVRLGNIGSE-VLNRLQAF-GFIISYNSRRKRPSV------L-FPYCANVYDLAV-NSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        80 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~~~~~~~~~~~------~-~~~~~~l~el~~-~aDiv~~~~p~t~~t~~li~  149 (223)
                      .+|||||+|.+|+. ....++.. ++++.++++++....      + ...+.+.+++++ +.|+|++++|........  
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~--   79 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLA--   79 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHH--
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccccccccc--
Confidence            58999999999976 56677665 567778887754322      1 123567788775 679999999854332222  


Q ss_pred             HHHHhcCCCCcEEEEcC-CCcccCHHHHHHHHHcCCce
Q 035615          150 KDVMAELGKGGMIINVG-RGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~a-rg~~vd~~al~~aL~~~~i~  186 (223)
                      ...++.=|  .+++.-- --.+-+...|.++.++.++.
T Consensus        80 ~~al~~gk--~V~~EKP~~~~~~e~~~l~~~a~~~~~~  115 (167)
T d1xeaa1          80 AFFLHLGI--PTFVDKPLAASAQECENLYELAEKHHQP  115 (167)
T ss_dssp             HHHHHTTC--CEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             cccccccc--ccccCCCCcCCHHHHHHHHHHHHHcCCE
Confidence            33333222  2555421 12234556777777766554

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.16  E-value=0.0002  Score=53.75  Aligned_cols=92  Identities=14%  Similarity=0.221  Sum_probs=60.5

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC-------------Cc--ccccChhhhhcCCcEEEEec
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV-------------LF--PYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-------------~~--~~~~~l~el~~~aDiv~~~~  138 (223)
                      .+...+|+|||.|++|..+|-.+...|.  ++..+|...+...             ..  .....-.+-++.||+|+++.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA   96 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA   96 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence            4667899999999999999999998887  7999998654321             00  01122345688999999986


Q ss_pred             cC--Ch-hhhh-cc--CH-------HHHhcCCCCcEEEEcCC
Q 035615          139 AL--TE-QTHH-II--NK-------DVMAELGKGGMIINVGR  167 (223)
Q Consensus       139 p~--t~-~t~~-li--~~-------~~l~~mk~ga~lIN~ar  167 (223)
                      ..  .+ +++- ++  |.       +.+....+.+++|+++.
T Consensus        97 g~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN  138 (160)
T d1i0za1          97 GVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN  138 (160)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            32  22 2221 11  11       22334467889999865

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.15  E-value=0.00028  Score=51.81  Aligned_cols=88  Identities=20%  Similarity=0.141  Sum_probs=57.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC-------------Cc---ccccChhhhhcCCcEEEEecc--
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV-------------LF---PYCANVYDLAVNSDVLVVCCA--  139 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-------------~~---~~~~~l~el~~~aDiv~~~~p--  139 (223)
                      +||+|||.|++|..+|-.+...|.  ++..+|..++...             ..   ....+-.|.++.||+|+++..  
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag~~   80 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEecccc
Confidence            589999999999999998886665  6889997664321             01   011222467899999999873  


Q ss_pred             CChh---------hhhccC--HHHHhcCCCCcEEEEcCC
Q 035615          140 LTEQ---------THHIIN--KDVMAELGKGGMIINVGR  167 (223)
Q Consensus       140 ~t~~---------t~~li~--~~~l~~mk~ga~lIN~ar  167 (223)
                      .++.         +..++.  .+.+....|.+++++++.
T Consensus        81 ~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1ojua1          81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (142)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             CCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence            2221         111111  123444567899999876

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.15  E-value=0.00042  Score=50.19  Aligned_cols=84  Identities=17%  Similarity=0.188  Sum_probs=62.4

Q ss_pred             ccCCCEEEEEec----------ChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------CcccccChhhhhc
Q 035615           76 KLGGMQVGIVRL----------GNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------LFPYCANVYDLAV  129 (223)
Q Consensus        76 ~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~~~~~~~l~el~~  129 (223)
                      .+.+++|+|+|+          +.-...+++.|...|++|.+|||.-....                ......+++++++
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~   89 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA   89 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence            366899999995          56778899999999999999997421110                1123578999999


Q ss_pred             CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEc
Q 035615          130 NSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINV  165 (223)
Q Consensus       130 ~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~  165 (223)
                      .+|+|+++++..+     + .+....++++.+++++
T Consensus        90 ~~D~ivi~t~h~~-----f-~~l~~~~~~~~~I~D~  119 (136)
T d1mv8a3          90 SSDVLVLGNGDEL-----F-VDLVNKTPSGKKLVDL  119 (136)
T ss_dssp             HCSEEEECSCCGG-----G-HHHHHSCCTTCEEEES
T ss_pred             hceEEEEEeCCHH-----H-HHHHHHhcCCCEEEEC
Confidence            9999999987542     1 2345567778889997

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.15  E-value=8.4e-05  Score=56.44  Aligned_cols=37  Identities=16%  Similarity=0.093  Sum_probs=33.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRP  114 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  114 (223)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.++++.+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~   65 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNR   65 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHH
T ss_pred             CCCEEEEECCCccchhheeccccccccccccccccccc
Confidence            58999999999999999999999998 79999887653

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.0024  Score=47.66  Aligned_cols=91  Identities=11%  Similarity=0.108  Sum_probs=66.7

Q ss_pred             cCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------CcccccChhhhhcCCcEEEEecc
Q 035615           77 LGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSV----------------LFPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        77 l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      |.|+||++||=| ++-++++..+..+|+++.+..+..-...                ......++++.+..+|+|....-
T Consensus         2 l~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~~   81 (170)
T d1otha2           2 LKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTW   81 (170)
T ss_dssp             CTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCS
T ss_pred             CCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeece
Confidence            789999999954 4667777777889999988876543221                12346789999999999987654


Q ss_pred             CChh------------hhhccCHHHHhcCCCCcEEEEcCC
Q 035615          140 LTEQ------------THHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       140 ~t~~------------t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      ....            ....++.+.++.++++++|.-+.-
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHplP  121 (170)
T d1otha2          82 ISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLP  121 (170)
T ss_dssp             SCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSC
T ss_pred             ecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCCC
Confidence            2211            124467888999999999998873

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.10  E-value=0.00016  Score=53.91  Aligned_cols=84  Identities=15%  Similarity=0.176  Sum_probs=55.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc-----ccChhh----hhcCCcEEEEeccCChh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY-----CANVYD----LAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~-----~~~l~e----l~~~aDiv~~~~p~t~~  143 (223)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++.+.+     ++..     ..+..+    .....|.++.+... ++
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~-~~  105 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVS-NS  105 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSC-HH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccccc-ch
Confidence            388999999999999999999999999999988765422     2211     112211    22334555555542 22


Q ss_pred             hhhccCHHHHhcCCCCcEEEEcC
Q 035615          144 THHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      +   + ...++.++++..++.++
T Consensus       106 ~---~-~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2         106 A---F-GQAIGMARRGGTIALVG  124 (166)
T ss_dssp             H---H-HHHHTTEEEEEEEEECC
T ss_pred             H---H-HHHHHHhcCCcEEEEEE
Confidence            2   2 34667788888888876

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.97  E-value=0.00045  Score=52.64  Aligned_cols=61  Identities=20%  Similarity=0.197  Sum_probs=42.1

Q ss_pred             EEEEEecChHHHHHHHHHHhC-CCEEEEE-cCCCCCCC-----------------------CcccccChhhhhcCCcEEE
Q 035615           81 QVGIVRLGNIGSEVLNRLQAF-GFIISYN-SRRKRPSV-----------------------LFPYCANVYDLAVNSDVLV  135 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~-G~~V~~~-~~~~~~~~-----------------------~~~~~~~l~el~~~aDiv~  135 (223)
                      +|||.|||+||+.+++.+... +++|+++ |+.+....                       +.....++.++..++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            799999999999999998854 5687665 44432110                       0011235667777899999


Q ss_pred             EeccCC
Q 035615          136 VCCALT  141 (223)
Q Consensus       136 ~~~p~t  141 (223)
                      -|.|.-
T Consensus        83 ecTG~f   88 (178)
T d1b7go1          83 DTTPNG   88 (178)
T ss_dssp             ECCSTT
T ss_pred             ECCCCc
Confidence            998854

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=96.97  E-value=0.0029  Score=46.44  Aligned_cols=102  Identities=20%  Similarity=0.224  Sum_probs=58.8

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhC----CCEEEEEcCCCCC--CCCcc------cccChhhhhcCCcEEEEeccCChhhhh
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAF----GFIISYNSRRKRP--SVLFP------YCANVYDLAVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~----G~~V~~~~~~~~~--~~~~~------~~~~l~el~~~aDiv~~~~p~t~~t~~  146 (223)
                      ++||||| .|-.|+.+.++|...    ..++..++.+...  .....      ....-.+.++++|++++|+|.. .+..
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~-~s~~   79 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGS-YTEK   79 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHH-HHHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCch-HHHH
Confidence            5899999 599999999987542    2455544332211  11111      1112235578999999999943 2233


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCc-----------ccCHHHHHHHHHcCC
Q 035615          147 IINKDVMAELGKGGMIINVGRGA-----------LIDEKEMLQFLVQGD  184 (223)
Q Consensus       147 li~~~~l~~mk~ga~lIN~arg~-----------~vd~~al~~aL~~~~  184 (223)
                      +. .+.. .-...+++|+.|.-=           =++.+.+.+++++|.
T Consensus        80 ~~-~~l~-~~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~~  126 (147)
T d1mb4a1          80 VY-PALR-QAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGT  126 (147)
T ss_dssp             HH-HHHH-HTTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             Hh-HHHH-HcCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcCC
Confidence            22 2222 223346788877421           156677777776654

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.87  E-value=0.00038  Score=52.68  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=60.3

Q ss_pred             CCEEEEEecChHHHH-HHHHHHhCC--CEEE-EEcCCCCCCC------Cc-ccccChhhhhc--CCcEEEEeccCChhhh
Q 035615           79 GMQVGIVRLGNIGSE-VLNRLQAFG--FIIS-YNSRRKRPSV------LF-PYCANVYDLAV--NSDVLVVCCALTEQTH  145 (223)
Q Consensus        79 g~~vgIiG~G~iG~~-~a~~l~~~G--~~V~-~~~~~~~~~~------~~-~~~~~l~el~~--~aDiv~~~~p~t~~t~  145 (223)
                      ..+|||||+|.+|+. .+..++.++  +++. ++|+++....      +. ..+.+++|+++  +.|+|++++|......
T Consensus         3 kirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~   82 (181)
T d1zh8a1           3 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLP   82 (181)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHH
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccccc
Confidence            358999999999987 477777654  4665 6787764322      12 24688999986  5789999998443222


Q ss_pred             hccCHHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHcCCce
Q 035615          146 HIINKDVMAELGKG-GMIINVG-RGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       146 ~li~~~~l~~mk~g-a~lIN~a-rg~~vd~~al~~aL~~~~i~  186 (223)
                      .+  ...++   .| .+++.-- --.+-+...|.+..++.+..
T Consensus        83 ~~--~~al~---~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~  120 (181)
T d1zh8a1          83 FI--EKALR---KGVHVICEKPISTDVETGKKVVELSEKSEKT  120 (181)
T ss_dssp             HH--HHHHH---TTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred             cc--ccccc---cchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence            11  22332   23 2444321 11233445566666555443

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.85  E-value=0.00036  Score=51.67  Aligned_cols=85  Identities=15%  Similarity=0.196  Sum_probs=58.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc-----ccC----hhhhhcCCcEEEEeccCChh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY-----CAN----VYDLAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~-----~~~----l~el~~~aDiv~~~~p~t~~  143 (223)
                      .|.+|.|+|.|.||...++.++..|.+|++.++++++..     ++..     ..+    +.+.-...|.++.+.+ .++
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~  105 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV-SKP  105 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-CHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-CHH
Confidence            488999999999999999999999999999987765432     2211     112    2333455666666654 333


Q ss_pred             hhhccCHHHHhcCCCCcEEEEcCC
Q 035615          144 THHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      +   + ...+..++++..++.++-
T Consensus       106 ~---~-~~a~~~l~~~G~i~~~g~  125 (168)
T d1rjwa2         106 A---F-QSAYNSIRRGGACVLVGL  125 (168)
T ss_dssp             H---H-HHHHHHEEEEEEEEECCC
T ss_pred             H---H-HHHHHHhccCCceEeccc
Confidence            2   2 456677888888887763

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.84  E-value=0.0007  Score=54.23  Aligned_cols=88  Identities=17%  Similarity=0.226  Sum_probs=53.7

Q ss_pred             cccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCC--hhhhhccCHH
Q 035615           75 FKLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALT--EQTHHIINKD  151 (223)
Q Consensus        75 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t--~~t~~li~~~  151 (223)
                      ++|+||++.|.| .+.||+++|+.|...|++|+..+|+.+..+..  ...+.+.  ..++..+.+-.+  ++.+.++ ++
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~--~~~~~~~--~~~~~~~~~D~s~~~~~~~~~-~~   76 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDEC--LEIWREK--GLNVEGSVCDLLSRTERDKLM-QT   76 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH--HHHHHHT--TCCEEEEECCTTCHHHHHHHH-HH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH--HHHHHhc--CCCceEEEeecCCHHHHHHHH-HH
Confidence            358999999999 57899999999999999999999875332111  0111111  123333444333  3344444 23


Q ss_pred             HHhcC-CCCcEEEEcCC
Q 035615          152 VMAEL-GKGGMIINVGR  167 (223)
Q Consensus       152 ~l~~m-k~ga~lIN~ar  167 (223)
                      ..+.. .+-.++||.+-
T Consensus        77 ~~~~~~g~idilinnag   93 (258)
T d1ae1a_          77 VAHVFDGKLNILVNNAG   93 (258)
T ss_dssp             HHHHTTSCCCEEEECCC
T ss_pred             HHHHhCCCcEEEecccc
Confidence            34444 34567887663

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.84  E-value=0.00027  Score=53.44  Aligned_cols=37  Identities=19%  Similarity=0.117  Sum_probs=32.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRP  114 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  114 (223)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r   64 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPIC   64 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhh
Confidence            48899999999999999999999998 68999987654

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.81  E-value=0.00052  Score=50.37  Aligned_cols=87  Identities=11%  Similarity=0.220  Sum_probs=55.8

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCCC----------c---c--cccChhhhhcCCcEEEEeccC--
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSVL----------F---P--YCANVYDLAVNSDVLVVCCAL--  140 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~----------~---~--~~~~l~el~~~aDiv~~~~p~--  140 (223)
                      .||+|||.|++|..+|-.+...|.  ++..+|..+....+          +   .  ...+-.+.++.||+|+++.-.  
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~~   81 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPRQ   81 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEeccccc
Confidence            479999999999999998876665  79999977643210          0   0  112223558899999998732  


Q ss_pred             Ch-hhh-hcc--C-------HHHHhcCCCCcEEEEcC
Q 035615          141 TE-QTH-HII--N-------KDVMAELGKGGMIINVG  166 (223)
Q Consensus       141 t~-~t~-~li--~-------~~~l~~mk~ga~lIN~a  166 (223)
                      .+ +++ .++  |       .+.+....|.+++|+++
T Consensus        82 ~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt  118 (143)
T d1llda1          82 KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT  118 (143)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             CCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            22 111 111  1       12344457788999886

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.80  E-value=0.0064  Score=44.86  Aligned_cols=98  Identities=9%  Similarity=0.103  Sum_probs=66.7

Q ss_pred             cCCCEEEEEe-c-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------CcccccChhhhhcCCcEEEEec
Q 035615           77 LGGMQVGIVR-L-GNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------LFPYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        77 l~g~~vgIiG-~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~~~~~~~l~el~~~aDiv~~~~  138 (223)
                      |+|++|++|| . .++-++.+..+..||+++....|..-...                ......++++.++.+|+|....
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            5799999999 3 68999999999999999988876532111                1123578999999999998765


Q ss_pred             cCChh------------hhh-ccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 035615          139 ALTEQ------------THH-IINKDVMAELGKGGMIINVG---RGALIDEK  174 (223)
Q Consensus       139 p~t~~------------t~~-li~~~~l~~mk~ga~lIN~a---rg~~vd~~  174 (223)
                      -....            ... ..+......+|++++|.-+.   ||.=|+.+
T Consensus        81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~lP~~r~~Eis~~  132 (161)
T d1vlva2          81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYE  132 (161)
T ss_dssp             CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHH
T ss_pred             eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCCCcccccccchh
Confidence            32110            111 22333444578899999876   46555544

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=96.76  E-value=0.0018  Score=47.70  Aligned_cols=89  Identities=12%  Similarity=0.170  Sum_probs=63.9

Q ss_pred             CCCEEEEEec---ChHHHHHHHHHHhCCCEEEEEcCCCCCC--CCcccccChhhhhcCCcEEEEeccCCh------h---
Q 035615           78 GGMQVGIVRL---GNIGSEVLNRLQAFGFIISYNSRRKRPS--VLFPYCANVYDLAVNSDVLVVCCALTE------Q---  143 (223)
Q Consensus        78 ~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~~~~--~~~~~~~~l~el~~~aDiv~~~~p~t~------~---  143 (223)
                      .|.+|++||=   +++.++++..+..||+++.+..|..-..  .......++++.++.+|+|........      .   
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~~~~~~~~~~~~ea~~~aDviy~~r~q~e~~~~~~~~~~   81 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLRIQNERHQSAVSQEG   81 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhccccceeEEEechhccccCceeeeeEEEEcccccchhhHH
Confidence            5899999994   7899999999999999988877654222  233446789999999999876542211      0   


Q ss_pred             --hhhccCHHHHhcCCCCcEEEEcC
Q 035615          144 --THHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       144 --t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                        ....++.+.+..++++++|..+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~i~MH~L  106 (151)
T d2at2a2          82 YLNKYGLTVERAERMKRHAIIMHPA  106 (151)
T ss_pred             hhhhhcchhhhhhhcccCeEEecCC
Confidence              11223556677778888888765

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=0.00053  Score=51.26  Aligned_cols=90  Identities=16%  Similarity=0.252  Sum_probs=58.3

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC-------------Cc---ccccChhhhhcCCcEEEEec
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV-------------LF---PYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-------------~~---~~~~~l~el~~~aDiv~~~~  138 (223)
                      +...+|+|||.|++|..+|-.+...|.  ++..+|.......             ..   ....+ .+.++.||+|+++.
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d-~~~~~~adivvita   95 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD-YNVSANSKLVIITA   95 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS-GGGGTTEEEEEECC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc-hhhhccccEEEEec
Confidence            556799999999999999999987765  7999997753211             10   11233 34568999999986


Q ss_pred             cC--Ch-hhh-hcc--CHH-------HHhcCCCCcEEEEcCC
Q 035615          139 AL--TE-QTH-HII--NKD-------VMAELGKGGMIINVGR  167 (223)
Q Consensus       139 p~--t~-~t~-~li--~~~-------~l~~mk~ga~lIN~ar  167 (223)
                      ..  .+ +++ .++  |.+       .+....+++++++++.
T Consensus        96 g~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          96 GARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             SCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            32  22 122 122  111       1333468899999876

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.75  E-value=0.0027  Score=46.70  Aligned_cols=90  Identities=16%  Similarity=0.119  Sum_probs=65.9

Q ss_pred             cCCCEEEEEec---ChHHHHHHHHHHhCCCEEEEEcCCCCCCC------------CcccccChhhhhcCCcEEEEeccCC
Q 035615           77 LGGMQVGIVRL---GNIGSEVLNRLQAFGFIISYNSRRKRPSV------------LFPYCANVYDLAVNSDVLVVCCALT  141 (223)
Q Consensus        77 l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------------~~~~~~~l~el~~~aDiv~~~~p~t  141 (223)
                      |.|+||++||=   +++.++++..+..||+++.+..|......            ......++++.++.+|+|....-..
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~~~   81 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQK   81 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCCG
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecccc
Confidence            78999999995   78999999999999999988876532221            1223578999999999988765322


Q ss_pred             hh-----------hhhccCHHHHhcCCCCcEEEEcC
Q 035615          142 EQ-----------THHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       142 ~~-----------t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      ..           ....++.+.++.+|+.+++.-+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~mHpl  117 (157)
T d1ml4a2          82 ERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  117 (157)
T ss_dssp             GGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             ccccchhhHHhhcchhccCHHHHhhcCCCeEEecCC
Confidence            11           11234667788888888887665

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.75  E-value=0.0005  Score=50.49  Aligned_cols=88  Identities=18%  Similarity=0.176  Sum_probs=57.1

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCCC--EEEEEcCCCCCCC--------Cc------ccccChhhhhcCCcEEEEecc--C
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFGF--IISYNSRRKRPSV--------LF------PYCANVYDLAVNSDVLVVCCA--L  140 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~--------~~------~~~~~l~el~~~aDiv~~~~p--~  140 (223)
                      .||+||| .|.+|+.+|-.+...|.  ++..+|....+..        .+      ....+..+.++.||+|+++..  .
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~   80 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence            4799999 59999999999987776  5888887543211        01      112456678899999999864  2


Q ss_pred             Ch-hhhh-cc--C----H---HHHhcCCCCcEEEEcCC
Q 035615          141 TE-QTHH-II--N----K---DVMAELGKGGMIINVGR  167 (223)
Q Consensus       141 t~-~t~~-li--~----~---~~l~~mk~ga~lIN~ar  167 (223)
                      .+ +++. ++  |    +   +.+....|.++++.++.
T Consensus        81 ~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN  118 (144)
T d1mlda1          81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN  118 (144)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            22 1221 11  1    1   23344478899999864

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.67  E-value=0.00088  Score=50.58  Aligned_cols=62  Identities=16%  Similarity=0.231  Sum_probs=40.4

Q ss_pred             CEEEEEecChHHHHHHHHHHhCC-CEEEEE-cCCCCCCC------Cc------------------ccccChhhhhcCCcE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFG-FIISYN-SRRKRPSV------LF------------------PYCANVYDLAVNSDV  133 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~-~~~~~~~~------~~------------------~~~~~l~el~~~aDi  133 (223)
                      ++|||-|||+||+.+.+.+...+ +++... ++.+....      ++                  ....+..++++++|+
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            58999999999999999886554 676644 44432210      00                  001245566778888


Q ss_pred             EEEeccCC
Q 035615          134 LVVCCALT  141 (223)
Q Consensus       134 v~~~~p~t  141 (223)
                      |+=|.|.-
T Consensus        82 ViEcTG~f   89 (171)
T d1cf2o1          82 VIDCTPEG   89 (171)
T ss_dssp             EEECCSTT
T ss_pred             EEEccCCC
Confidence            88888743

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.66  E-value=0.00071  Score=50.71  Aligned_cols=83  Identities=17%  Similarity=0.251  Sum_probs=56.6

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc---ccChh-h--hhcCCcEEEEeccCChhhh
Q 035615           78 GGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY---CANVY-D--LAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        78 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~---~~~l~-e--l~~~aDiv~~~~p~t~~t~  145 (223)
                      .|++|.|.|. |.+|+...+.++.+|++|++.++++++.+     ++..   +.+.. +  --...|+|+-+..  +.  
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G--~~--  102 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--KE--  102 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC--TT--
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc--hh--
Confidence            4899999995 99999999999999999998887765432     2221   12211 1  1245788877654  11  


Q ss_pred             hccCHHHHhcCCCCcEEEEcCC
Q 035615          146 HIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~ar  167 (223)
                        + .+.++.++++..++.++.
T Consensus       103 --~-~~~~~~l~~~G~~v~~G~  121 (171)
T d1iz0a2         103 --V-EESLGLLAHGGRLVYIGA  121 (171)
T ss_dssp             --H-HHHHTTEEEEEEEEEC--
T ss_pred             --H-HHHHHHHhcCCcEEEEeC
Confidence              2 456778888888888763

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.65  E-value=0.00063  Score=50.83  Aligned_cols=60  Identities=8%  Similarity=0.054  Sum_probs=41.6

Q ss_pred             CEEEEEecChHHHHHHHH--HHh---C-CCEEEEEcCCCCCCC--------------CcccccChhhhhcCCcEEEEecc
Q 035615           80 MQVGIVRLGNIGSEVLNR--LQA---F-GFIISYNSRRKRPSV--------------LFPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~--l~~---~-G~~V~~~~~~~~~~~--------------~~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      +||.|||.|.+|...+-.  ++.   + +-++..+|..+.+..              ......+.++.++.||+|+++.-
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            589999999998776643  222   2 347999998765422              11123577889999999999874

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.63  E-value=0.00075  Score=50.89  Aligned_cols=61  Identities=13%  Similarity=0.208  Sum_probs=43.2

Q ss_pred             CCEEEEEecChHHHHHHH---HHH--hC-CCEEEEEcCCCCCCC-----------------CcccccChhhhhcCCcEEE
Q 035615           79 GMQVGIVRLGNIGSEVLN---RLQ--AF-GFIISYNSRRKRPSV-----------------LFPYCANVYDLAVNSDVLV  135 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~---~l~--~~-G~~V~~~~~~~~~~~-----------------~~~~~~~l~el~~~aDiv~  135 (223)
                      ++||+|||.|++|...+-   .++  .+ +-++..+|..++..+                 ......+.+|.++.||+|+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            579999999999976432   332  33 458999998865421                 1112468899999999999


Q ss_pred             Eecc
Q 035615          136 VCCA  139 (223)
Q Consensus       136 ~~~p  139 (223)
                      ++.-
T Consensus        82 ~~~~   85 (171)
T d1obba1          82 NTAM   85 (171)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            8853

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.0067  Score=44.30  Aligned_cols=102  Identities=19%  Similarity=0.228  Sum_probs=58.2

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhC----CCEEEEEcCCCCCCC--Cc-----ccccC-hhhhhcCCcEEEEeccCChhhhh
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAF----GFIISYNSRRKRPSV--LF-----PYCAN-VYDLAVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~----G~~V~~~~~~~~~~~--~~-----~~~~~-l~el~~~aDiv~~~~p~t~~t~~  146 (223)
                      |+|||||. |.+|+.+.++|...    -.++..+..+.....  ..     ..... -.+.++.+|++++++|... ...
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~-s~~   80 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDY-TNE   80 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHH-HHH
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchH-HHH
Confidence            58999996 99999999866432    225555544332211  11     11111 2235789999999998432 222


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCC---c--------ccCHHHHHHHHHcCC
Q 035615          147 IINKDVMAELGKGGMIINVGRG---A--------LIDEKEMLQFLVQGD  184 (223)
Q Consensus       147 li~~~~l~~mk~ga~lIN~arg---~--------~vd~~al~~aL~~~~  184 (223)
                      +  ...+..-+.+.++|+.|.-   .        =|+.+.|.+++++|.
T Consensus        81 ~--~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g~  127 (146)
T d1t4ba1          81 I--YPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGI  127 (146)
T ss_dssp             H--HHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             h--hHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcCC
Confidence            2  2222223444678887742   2        135667777877643

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.00095  Score=48.88  Aligned_cols=78  Identities=4%  Similarity=-0.063  Sum_probs=50.7

Q ss_pred             EEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC---------CCccc-------ccChhhh-hcCCcEEEEeccCChh
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS---------VLFPY-------CANVYDL-AVNSDVLVVCCALTEQ  143 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---------~~~~~-------~~~l~el-~~~aDiv~~~~p~t~~  143 (223)
                      .+-|+|+|++|+.+++.|...|.+|++++..++..         .++..       ...++++ +.++|.++++++....
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence            58999999999999999999999998887765321         11211       1122222 6789999998875443


Q ss_pred             hhhccCHHHHhcCCCCc
Q 035615          144 THHIINKDVMAELGKGG  160 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga  160 (223)
                      +..+  ....+.+.+..
T Consensus        85 n~~~--~~~~r~~~~~~   99 (153)
T d1id1a_          85 NAFV--VLSAKDMSSDV   99 (153)
T ss_dssp             HHHH--HHHHHHHTSSS
T ss_pred             HHHH--HHHHHHhCCCC
Confidence            3322  33444554554

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.55  E-value=0.0011  Score=49.55  Aligned_cols=104  Identities=17%  Similarity=0.140  Sum_probs=59.4

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCC----CEEEEE-cCCCCCCCCcccccChhhhhc--CCcEEEEeccCChhhhhccCHH
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFG----FIISYN-SRRKRPSVLFPYCANVYDLAV--NSDVLVVCCALTEQTHHIINKD  151 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~-~~~~~~~~~~~~~~~l~el~~--~aDiv~~~~p~t~~t~~li~~~  151 (223)
                      ..+|||||+|.||+..++.++...    ..+... ++............+++|++.  +.|+|++++|..  ++.-+-..
T Consensus         7 k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~--~H~~~~~~   84 (172)
T d1lc0a1           7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQEIDVAYICSESS--SHEDYIRQ   84 (172)
T ss_dssp             SEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEEBCCHHHHHHCSSEEEEEECSCGG--GHHHHHHH
T ss_pred             CcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHHHHHhhccCcCCHHHHHhCCCcchhhhccccc--cccccccc
Confidence            348999999999999888876532    233322 222222222233568889886  568899999844  22222233


Q ss_pred             HHhcCCCCcEEEEcC-CCcccCHHHHHHHHHcCCce
Q 035615          152 VMAELGKGGMIINVG-RGALIDEKEMLQFLVQGDIN  186 (223)
Q Consensus       152 ~l~~mk~ga~lIN~a-rg~~vd~~al~~aL~~~~i~  186 (223)
                      .++.=|  .+++.=- --.+-+.+.|.++.++.+..
T Consensus        85 al~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~~  118 (172)
T d1lc0a1          85 FLQAGK--HVLVEYPMTLSFAAAQELWELAAQKGRV  118 (172)
T ss_dssp             HHHTTC--EEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             ccccch--hhhcCCCccccHHHHHHHHHHHHHcCCe
Confidence            444322  3555421 22445666777766665544

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.55  E-value=0.00051  Score=53.81  Aligned_cols=64  Identities=16%  Similarity=0.091  Sum_probs=45.2

Q ss_pred             CCCEEEEEecChHHHH-HHHHHHhC-CCEEE-EEcCCCCCCC------C-----cccccChhhhhc--CCcEEEEeccCC
Q 035615           78 GGMQVGIVRLGNIGSE-VLNRLQAF-GFIIS-YNSRRKRPSV------L-----FPYCANVYDLAV--NSDVLVVCCALT  141 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~~------~-----~~~~~~l~el~~--~aDiv~~~~p~t  141 (223)
                      +--+|||||+|.||+. +...++.. +++|. ++|++++...      +     ...+.+++++++  +.|+|++++|..
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~  111 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNS  111 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGG
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchh
Confidence            3458999999999975 55666654 67865 6788764422      1     123578899886  578999999844

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.54  E-value=0.0016  Score=49.16  Aligned_cols=33  Identities=18%  Similarity=0.291  Sum_probs=25.4

Q ss_pred             CEEEEEecChHHHHHHHHHHhC-CCEEEE-EcCCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF-GFIISY-NSRRK  112 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~-~~~~~  112 (223)
                      .+|||.|||+||+.+.+.+... .++++. .|+.+
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~   37 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKP   37 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSC
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCC
Confidence            5899999999999999988653 467654 45443

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=96.54  E-value=0.003  Score=46.06  Aligned_cols=87  Identities=15%  Similarity=0.258  Sum_probs=54.3

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCCC--EEEEEcCCCCC--CC----------Cc----c-cccChhhhhcCCcEEEEecc
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFGF--IISYNSRRKRP--SV----------LF----P-YCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G~--~V~~~~~~~~~--~~----------~~----~-~~~~l~el~~~aDiv~~~~p  139 (223)
                      .||+||| .|.+|+.+|-.+...+.  ++..+|.....  ..          .+    . ...+ .+.++.||+|+++.-
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~-~~~~~~aDiVvitaG   79 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG-YEDTAGSDVVVITAG   79 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC-GGGGTTCSEEEECCC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCC-HHHhhhcCEEEEecc
Confidence            4899999 69999999999987766  78888864321  10          00    0 1123 344689999999863


Q ss_pred             --CChh-hh--------hccC--HHHHhcCCCCcEEEEcCC
Q 035615          140 --LTEQ-TH--------HIIN--KDVMAELGKGGMIINVGR  167 (223)
Q Consensus       140 --~t~~-t~--------~li~--~~~l~~mk~ga~lIN~ar  167 (223)
                        ..+. ++        .++.  .+.+....|.++++.++.
T Consensus        80 ~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN  120 (142)
T d1o6za1          80 IPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (142)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             cccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence              2221 21        1111  123455677889998854

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.0023  Score=46.87  Aligned_cols=88  Identities=15%  Similarity=0.126  Sum_probs=54.9

Q ss_pred             CEEEEEec-ChHHHHHHHHHH-h--CCCEEEEEcCCCCCCC------Cc---c-----cccChhhhhcCCcEEEEecc--
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQ-A--FGFIISYNSRRKRPSV------LF---P-----YCANVYDLAVNSDVLVVCCA--  139 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~-~--~G~~V~~~~~~~~~~~------~~---~-----~~~~l~el~~~aDiv~~~~p--  139 (223)
                      ++|+|||. |++|+.+|-.+. .  ++-++..+|..+....      ..   .     ...+..+.++.||+|+++.-  
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~   80 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence            58999995 999999998764 3  4568989987543210      10   0     01233456889999999873  


Q ss_pred             CChh-hh-hcc--C-------HHHHhcCCCCcEEEEcCC
Q 035615          140 LTEQ-TH-HII--N-------KDVMAELGKGGMIINVGR  167 (223)
Q Consensus       140 ~t~~-t~-~li--~-------~~~l~~mk~ga~lIN~ar  167 (223)
                      .++. ++ .++  |       .+.+....|.+++|.++.
T Consensus        81 ~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN  119 (145)
T d2cmda1          81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN  119 (145)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence            2221 11 122  1       123444578899999864

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00087  Score=53.30  Aligned_cols=88  Identities=16%  Similarity=0.092  Sum_probs=53.4

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCCh--hhhhccCHH
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTE--QTHHIINKD  151 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~--~t~~li~~~  151 (223)
                      ++|+||++.|-|. +.||+.+|+.|...|++|+..+|+.++.+..  ...+.+  ...++....+-.++  +.+.++ ++
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~--~~~~~~--~~~~~~~~~~Dvs~~~~v~~~~-~~   77 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEET--AAKCKG--LGAKVHTFVVDCSNREDIYSSA-KK   77 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH--HHHHHH--TTCCEEEEECCTTCHHHHHHHH-HH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH--HHHHHh--cCCcEEEEEeeCCCHHHHHHHH-HH
Confidence            4599999999997 4599999999999999999999876432111  011111  12344444443332  233444 23


Q ss_pred             HHhcCCCCcEEEEcCC
Q 035615          152 VMAELGKGGMIINVGR  167 (223)
Q Consensus       152 ~l~~mk~ga~lIN~ar  167 (223)
                      ..+.+.+=-++||.+.
T Consensus        78 i~~~~g~idilinnag   93 (244)
T d1yb1a_          78 VKAEIGDVSILVNNAG   93 (244)
T ss_dssp             HHHHTCCCSEEEECCC
T ss_pred             HHHHcCCCceeEeecc
Confidence            3444544456666654

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.48  E-value=0.0068  Score=45.90  Aligned_cols=91  Identities=9%  Similarity=0.018  Sum_probs=64.5

Q ss_pred             ccCCCEEEEEec--ChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------CcccccChhhhhcCCcEEEEe
Q 035615           76 KLGGMQVGIVRL--GNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------LFPYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        76 ~l~g~~vgIiG~--G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~~~~~~~l~el~~~aDiv~~~  137 (223)
                      .|.|.||++||=  -++.++++..+..||+++.+..|..-...                ......++++.++.+|+|...
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~   81 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD   81 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence            488999999994  58999999999999999999987432111                122357889999999999775


Q ss_pred             ccCC----hh---------hhhccC-HHHHhcCCCCcEEEEcC
Q 035615          138 CALT----EQ---------THHIIN-KDVMAELGKGGMIINVG  166 (223)
Q Consensus       138 ~p~t----~~---------t~~li~-~~~l~~mk~ga~lIN~a  166 (223)
                      .=..    .+         ....++ ......+|++++|.-+.
T Consensus        82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          82 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             hhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            5211    00         112233 44555678999999887

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.42  E-value=0.0019  Score=46.28  Aligned_cols=31  Identities=26%  Similarity=0.394  Sum_probs=26.3

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCCCEEE-EEcC
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFGFIIS-YNSR  110 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~-~~~~  110 (223)
                      ++|+|+|+ |+||+.+++.+...|+++. .+++
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~   33 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDV   33 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECC
Confidence            57999996 9999999999999999865 4553

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.34  E-value=0.0037  Score=46.87  Aligned_cols=84  Identities=20%  Similarity=0.137  Sum_probs=56.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----Cccc------cc-Chhhhh-----cCCcEEEEecc
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----LFPY------CA-NVYDLA-----VNSDVLVVCCA  139 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~------~~-~l~el~-----~~aDiv~~~~p  139 (223)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.++++++.+     ++..      .. ...+..     ...|+++-++.
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G  107 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  107 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecc
Confidence            48899999999999999999999999 5778888776532     2211      11 112111     45788888876


Q ss_pred             CChhhhhccCHHHHhcCCCC-cEEEEcC
Q 035615          140 LTEQTHHIINKDVMAELGKG-GMIINVG  166 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~mk~g-a~lIN~a  166 (223)
                      . +++   + ...+..++++ ..++-++
T Consensus       108 ~-~~~---~-~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2         108 T-AQT---L-KAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             C-HHH---H-HHHHHTBCTTTCEEEECC
T ss_pred             c-chH---H-HHHHHHhhcCCeEEEecC
Confidence            2 222   2 4456677775 5677666

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.0022  Score=50.44  Aligned_cols=40  Identities=15%  Similarity=0.068  Sum_probs=35.2

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      +.|+||++.|.|. +.||+++|+.|...|++|+..+|+.+.
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~   41 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSG   41 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            3589999999996 679999999999999999999887643

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.33  E-value=0.00059  Score=51.25  Aligned_cols=85  Identities=14%  Similarity=0.019  Sum_probs=56.2

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEE-EEEcCCCCCCC-----Cccc-----ccChhhhhc-----CCcEEEEeccCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFII-SYNSRRKRPSV-----LFPY-----CANVYDLAV-----NSDVLVVCCALT  141 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V-~~~~~~~~~~~-----~~~~-----~~~l~el~~-----~aDiv~~~~p~t  141 (223)
                      .|.+|.|+|.|.||...++.++.+|+++ ++.++++.+.+     ++..     ..+..+.++     ..|+++-++. +
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G-~  106 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG-S  106 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC-C
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCC-c
Confidence            4899999999999999999999999965 56666654322     2211     122322221     2688888875 2


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      +++.    +..++.++++..++.++-
T Consensus       107 ~~~~----~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2         107 PEIL----KQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             HHHH----HHHHHTEEEEEEEEECCC
T ss_pred             HHHH----HHHHhcccCceEEEEEee
Confidence            2221    345677888888888763

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.31  E-value=0.0038  Score=46.81  Aligned_cols=38  Identities=21%  Similarity=0.164  Sum_probs=34.4

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPS  115 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~  115 (223)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|+++++.
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl   67 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKF   67 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHH
Confidence            58899999999999999999999996 799999887764

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.0017  Score=48.50  Aligned_cols=60  Identities=15%  Similarity=0.228  Sum_probs=42.5

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHhC-CCEEE-EEcCCCCCCC-------------CcccccChhhhhcCCcEEEEec
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQAF-GFIIS-YNSRRKRPSV-------------LFPYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~-------------~~~~~~~l~el~~~aDiv~~~~  138 (223)
                      ..+|+|+|+ |+||+.+++.+... ++++. ++++...+..             +.....+++++++.+|+|+=-.
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs   79 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT   79 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEec
Confidence            458999995 99999999988754 77854 6666543211             1223567788899999887543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0022  Score=51.04  Aligned_cols=38  Identities=13%  Similarity=0.181  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      ..|+||++.|-|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4689999999995 8999999999999999999998864

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=96.20  E-value=0.024  Score=44.16  Aligned_cols=122  Identities=12%  Similarity=0.153  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCC----
Q 035615           38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRK----  112 (223)
Q Consensus        38 vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~----  112 (223)
                      +|=-+++-+|+..|-                    .+..|+..+|.|+|.|.-|-.+++.+...+.+ ++.+|+..    
T Consensus         5 TaaV~LAgll~a~~~--------------------~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~   64 (222)
T d1vl6a1           5 TAVVVSAAFLNALKL--------------------TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNE   64 (222)
T ss_dssp             HHHHHHHHHHHHHHH--------------------HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCT
T ss_pred             HHHHHHHHHHHHHHH--------------------hCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEc
Confidence            344567777777664                    24568999999999999999999999988874 78888652    


Q ss_pred             -CC---CC-----------CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 035615          113 -RP---SV-----------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEML  177 (223)
Q Consensus       113 -~~---~~-----------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~  177 (223)
                       ..   ..           ......++.+++..++++...-     +.+++.++.+..|.+..++.=.|+-.---|..  
T Consensus        65 ~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e~~--  137 (222)
T d1vl6a1          65 NDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPVPEIDPE--  137 (222)
T ss_dssp             TSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSSCHH--
T ss_pred             CcccccccHHHHHHHhhhcchhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCCccchhhh--
Confidence             11   00           0112356788888898765543     57888889999999999999888765533332  


Q ss_pred             HHHHcCCce
Q 035615          178 QFLVQGDIN  186 (223)
Q Consensus       178 ~aL~~~~i~  186 (223)
                      .+...|+..
T Consensus       138 ~a~~~G~ai  146 (222)
T d1vl6a1         138 LAREAGAFI  146 (222)
T ss_dssp             HHHHTTCSE
T ss_pred             hheeccceE
Confidence            445667765

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.0037  Score=44.05  Aligned_cols=37  Identities=16%  Similarity=0.150  Sum_probs=33.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV  116 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~  116 (223)
                      +++.|||.|.||-.+|..|..+|++|..+.+.+....
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~   60 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA   60 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccch
Confidence            6899999999999999999999999999988776543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.14  E-value=0.0037  Score=43.78  Aligned_cols=38  Identities=26%  Similarity=0.342  Sum_probs=33.8

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV  116 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~  116 (223)
                      .++|.|||.|.+|-.+|..|..+|.+|..+.+......
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~   59 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR   59 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhccccc
Confidence            47899999999999999999999999999998765443

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.11  E-value=0.005  Score=48.84  Aligned_cols=85  Identities=15%  Similarity=0.135  Sum_probs=51.8

Q ss_pred             cCCCEEEEEec-C--hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615           77 LGGMQVGIVRL-G--NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM  153 (223)
Q Consensus        77 l~g~~vgIiG~-G--~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l  153 (223)
                      |+||++.|.|. |  .||.++|+.|...|++|+..+|+.+..+   ....+.+....+.+...-+....+...+++ +..
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~---~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-~~~   78 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEK---RVRPIAQELNSPYVYELDVSKEEHFKSLYN-SVK   78 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHH---HHHHHHHHTTCCCEEECCTTCHHHHHHHHH-HHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHHhhCCceeEeeecccchhhHHHHHH-HHH
Confidence            88999999996 4  4999999999999999999888743211   122333334455555444433334444443 333


Q ss_pred             hcCCCCcEEEEc
Q 035615          154 AELGKGGMIINV  165 (223)
Q Consensus       154 ~~mk~ga~lIN~  165 (223)
                      +.+.+--++||.
T Consensus        79 ~~~g~id~lV~n   90 (274)
T d2pd4a1          79 KDLGSLDFIVHS   90 (274)
T ss_dssp             HHTSCEEEEEEC
T ss_pred             HHcCCCCeEEee
Confidence            444333344433

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.11  E-value=0.0038  Score=43.44  Aligned_cols=36  Identities=17%  Similarity=0.149  Sum_probs=32.7

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS  115 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~  115 (223)
                      +++.|||.|.+|-.+|..+..+|.+|..+.+.+.-.
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il   58 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL   58 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecceec
Confidence            789999999999999999999999999988776543

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0089  Score=43.99  Aligned_cols=90  Identities=10%  Similarity=0.144  Sum_probs=63.3

Q ss_pred             cCCCEEEEEec---ChHHHHHHHHHHhCCC-EEEEEcCCCCCCC------------CcccccChhhhhcCCcEEEEeccC
Q 035615           77 LGGMQVGIVRL---GNIGSEVLNRLQAFGF-IISYNSRRKRPSV------------LFPYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        77 l~g~~vgIiG~---G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------------~~~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      |.|.+|++||=   |++.++++..+..+|. .+.+..+......            ....+.++++.++++|+|....-.
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~   81 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ   81 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeeccc
Confidence            67999999994   7799999999999975 4556655432211            122357889999999999865322


Q ss_pred             Chh----------hhhccCHHHHhcCCCCcEEEEcC
Q 035615          141 TEQ----------THHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       141 t~~----------t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      ...          ....++++.++.++++++|..+.
T Consensus        82 ~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcL  117 (160)
T d1ekxa2          82 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  117 (160)
T ss_dssp             GGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCS
T ss_pred             ccccchHHHHHHHHHhhccHHHHHhcCcceeeecCC
Confidence            111          12334678888899999998776

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.09  E-value=0.0046  Score=46.22  Aligned_cols=62  Identities=5%  Similarity=-0.087  Sum_probs=41.7

Q ss_pred             CEEEEEecChHH--HHHHHHHHh---CC-CEEEEEcCCCCCCC---------------C----cccccChhhhhcCCcEE
Q 035615           80 MQVGIVRLGNIG--SEVLNRLQA---FG-FIISYNSRRKRPSV---------------L----FPYCANVYDLAVNSDVL  134 (223)
Q Consensus        80 ~~vgIiG~G~iG--~~~a~~l~~---~G-~~V~~~~~~~~~~~---------------~----~~~~~~l~el~~~aDiv  134 (223)
                      .||.|||.|+.|  ..++..++.   +. -++..+|..+....               .    .....+..+.++.||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            589999999776  445555543   22 37889998764311               0    11245677889999999


Q ss_pred             EEeccCC
Q 035615          135 VVCCALT  141 (223)
Q Consensus       135 ~~~~p~t  141 (223)
                      +++....
T Consensus        82 v~ta~~~   88 (169)
T d1s6ya1          82 TTQFRVG   88 (169)
T ss_dssp             EECCCTT
T ss_pred             EEccccC
Confidence            9998543

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.07  E-value=0.023  Score=43.35  Aligned_cols=96  Identities=14%  Similarity=0.217  Sum_probs=68.2

Q ss_pred             HHHHHHHhCCCEEEEEcCCCCCC---------CCcccccChhhhhcCCcEEEEe-ccCChhhhhccCHHHHhcCCCCcEE
Q 035615           93 EVLNRLQAFGFIISYNSRRKRPS---------VLFPYCANVYDLAVNSDVLVVC-CALTEQTHHIINKDVMAELGKGGMI  162 (223)
Q Consensus        93 ~~a~~l~~~G~~V~~~~~~~~~~---------~~~~~~~~l~el~~~aDiv~~~-~p~t~~t~~li~~~~l~~mk~ga~l  162 (223)
                      ..++.|...|++|++=.-.....         .++....+.++++.++|+|+.. .|...+    .+.+.++.||+|.++
T Consensus        21 ~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~l   96 (194)
T d1l7da2          21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVL   96 (194)
T ss_dssp             HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEE
Confidence            56788999999998754332211         1333456778999999988754 453322    233467889999999


Q ss_pred             EEcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615          163 INVGRGALIDEKEMLQFLVQGDINGVGLDVFE  194 (223)
Q Consensus       163 IN~arg~~vd~~al~~aL~~~~i~~a~lDV~~  194 (223)
                      |..--  .....++.++|.+.++...++|...
T Consensus        97 i~~l~--p~~~~~~~~~l~~~~it~~a~e~ip  126 (194)
T d1l7da2          97 MCHLG--ALTNRPVVEALTKRKITAYAMELMP  126 (194)
T ss_dssp             EEECC--GGGCHHHHHHHHHTTCEEEEGGGCC
T ss_pred             EEecc--cccchhHHHHHHhcCceEEeeeccc
Confidence            98653  4567789999999999988888763

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.07  E-value=0.0022  Score=46.92  Aligned_cols=59  Identities=20%  Similarity=0.193  Sum_probs=42.0

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCCC--EEEEEcCCCCCC--C----------Cc-----c---cccChhhhhcCCcEEEE
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFGF--IISYNSRRKRPS--V----------LF-----P---YCANVYDLAVNSDVLVV  136 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~--~----------~~-----~---~~~~l~el~~~aDiv~~  136 (223)
                      +||+|||. |.+|+.+|-.+...|.  ++..+|+.+...  +          ..     .   ...+..+.++.||+|++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            58999995 9999999999988775  788888764211  0          00     0   01223467889999999


Q ss_pred             ec
Q 035615          137 CC  138 (223)
Q Consensus       137 ~~  138 (223)
                      +.
T Consensus        81 tA   82 (145)
T d1hyea1          81 TS   82 (145)
T ss_dssp             CC
T ss_pred             ec
Confidence            85

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.07  E-value=0.0035  Score=48.57  Aligned_cols=34  Identities=15%  Similarity=0.252  Sum_probs=31.8

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      ||+|.|||.|.-|-..|..|+..|++|.+++..+
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            6999999999999999999999999999998754

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=96.06  E-value=0.0012  Score=46.88  Aligned_cols=82  Identities=11%  Similarity=0.038  Sum_probs=49.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc----ccC---hhhh-hcCCcEEEEeccCChhhhh
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY----CAN---VYDL-AVNSDVLVVCCALTEQTHH  146 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~----~~~---l~el-~~~aDiv~~~~p~t~~t~~  146 (223)
                      |.+-|+|+|.+|+.+++.|++.+  |.+.+..+....     +...    ..+   |.++ +.+|+.++++.+....+..
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~~--i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~   78 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGSE--VFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIH   78 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGGG--EEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHcCCC--CEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHH
Confidence            46889999999999999998655  555665554321     1111    112   2222 6789999988875443333


Q ss_pred             ccCHHHHhcCCCCc-EEEEc
Q 035615          147 IINKDVMAELGKGG-MIINV  165 (223)
Q Consensus       147 li~~~~l~~mk~ga-~lIN~  165 (223)
                      +  ....+.+.|.. +++.+
T Consensus        79 ~--~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          79 C--ILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             H--HHHHHHHCSSSCEEEEC
T ss_pred             H--HHHHHHHCCCceEEEEE
Confidence            2  34455565554 44433

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0046  Score=43.06  Aligned_cols=37  Identities=22%  Similarity=0.228  Sum_probs=33.2

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV  116 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~  116 (223)
                      +++.|||.|.+|-.+|..++.+|.+|..+.+.+....
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~   58 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP   58 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhhh
Confidence            6899999999999999999999999999988775543

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.05  E-value=0.0049  Score=42.32  Aligned_cols=40  Identities=15%  Similarity=0.016  Sum_probs=33.1

Q ss_pred             CccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      ...+.+||+|+|||.|.-|..+|.-+...+-++++..++.
T Consensus        26 ~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          26 EPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             CGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             chhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            4567999999999999999999999988877766554443

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.01  Score=45.85  Aligned_cols=65  Identities=20%  Similarity=0.214  Sum_probs=48.3

Q ss_pred             ccCCCEEEEEe-cChHHHHHHHHHHhCCC--EEEEEcCCCCCCC------------CcccccChhhhhcCCcEEEEeccC
Q 035615           76 KLGGMQVGIVR-LGNIGSEVLNRLQAFGF--IISYNSRRKRPSV------------LFPYCANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        76 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~------------~~~~~~~l~el~~~aDiv~~~~p~  140 (223)
                      ...+++|.|.| .|.||+.+++.|...|.  +|+.++|++....            ++....++.+.++.+|+++.++..
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   90 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccccc
Confidence            36789999999 69999999999987775  8999888664322            111234566778899999887643

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.0035  Score=49.35  Aligned_cols=37  Identities=24%  Similarity=0.240  Sum_probs=32.8

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR  111 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  111 (223)
                      ..|++++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus        26 ~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          26 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            35999999999999999999999999999 57777754

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.02  E-value=0.0037  Score=42.41  Aligned_cols=37  Identities=22%  Similarity=0.231  Sum_probs=31.9

Q ss_pred             cCCCEEEEEecChHH-HHHHHHHHhCCCEEEEEcCCCC
Q 035615           77 LGGMQVGIVRLGNIG-SEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        77 l~g~~vgIiG~G~iG-~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      -+.+++=+||.|.+| .++|+.|+..|++|.++|....
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            357899999999999 5569999999999999997643

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.01  E-value=0.0045  Score=45.07  Aligned_cols=83  Identities=11%  Similarity=0.059  Sum_probs=50.1

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCC---CEEEEE-cCCCCCCC-C-----cccccChhhhhcCCcEEEEeccCChhhhhcc
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFG---FIISYN-SRRKRPSV-L-----FPYCANVYDLAVNSDVLVVCCALTEQTHHII  148 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G---~~V~~~-~~~~~~~~-~-----~~~~~~l~el~~~aDiv~~~~p~t~~t~~li  148 (223)
                      ++|||||. |-.|+.+.+.|...+   .++... +++..... .     ........+.+.++|++++++|... ...+.
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~-s~~~~   81 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEV-SRAHA   81 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHH-HHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcch-hhhhc
Confidence            67999996 999999999997443   355544 33222111 0     0111122345788999999998432 22221


Q ss_pred             CHHHHhcCCCCcEEEEcCC
Q 035615          149 NKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       149 ~~~~l~~mk~ga~lIN~ar  167 (223)
                       .+   ..+.|..+||.|.
T Consensus        82 -~~---~~~~g~~VID~Ss   96 (144)
T d2hjsa1          82 -ER---ARAAGCSVIDLSG   96 (144)
T ss_dssp             -HH---HHHTTCEEEETTC
T ss_pred             -cc---cccCCceEEeech
Confidence             22   2357889998774

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.99  E-value=0.0088  Score=41.29  Aligned_cols=60  Identities=13%  Similarity=0.102  Sum_probs=46.5

Q ss_pred             CCEEEEEec----------ChHHHHHHHHHHhCCCEEEEEcCCCCCCC---CcccccChhhhhcCCcEEEEec
Q 035615           79 GMQVGIVRL----------GNIGSEVLNRLQAFGFIISYNSRRKRPSV---LFPYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        79 g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---~~~~~~~l~el~~~aDiv~~~~  138 (223)
                      .|+|||+|+          ..-.-.+.+.|+..|++|.+|||.-....   ......++++++..||+|++..
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~~~~~~~~~~l~~~~~~sDiII~~~   87 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVTNR   87 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEECSS
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHhccCCEEEeCHHHHHhhCCEEEEcC
Confidence            468999995          45667889999999999999999875443   2234568999999999876543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=95.96  E-value=0.0022  Score=51.19  Aligned_cols=38  Identities=21%  Similarity=0.178  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      +|+||++.|.|. +.||+++|+.|...|++|+..+|+.+
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE   40 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            589999999996 57999999999999999999988753

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.92  E-value=0.017  Score=46.88  Aligned_cols=91  Identities=11%  Similarity=0.145  Sum_probs=54.6

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChh----hhhcCCcEEEEeccCChhhhhccC
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVY----DLAVNSDVLVVCCALTEQTHHIIN  149 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~----el~~~aDiv~~~~p~t~~t~~li~  149 (223)
                      .+|+||++.|-|. +.||+++|+.|...|++|++.++.............++    ++-...-.....+-..++.+.+++
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~   82 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVK   82 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHH
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHH
Confidence            4589999999996 67999999999999999999988765432221111222    222333333333333334444443


Q ss_pred             HHHHhcCCCCcEEEEcC
Q 035615          150 KDVMAELGKGGMIINVG  166 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~a  166 (223)
                       ...+.+.+=-++||.+
T Consensus        83 -~~~~~~G~iDiLVnNA   98 (302)
T d1gz6a_          83 -TALDTFGRIDVVVNNA   98 (302)
T ss_dssp             -HHHHHTSCCCEEEECC
T ss_pred             -HHHHHcCCCCEEEECC
Confidence             3444444334666654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.91  E-value=0.0068  Score=42.16  Aligned_cols=39  Identities=18%  Similarity=-0.032  Sum_probs=34.5

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS  115 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~  115 (223)
                      ..+++|.|||.|.+|-.+|..|+.+|.+|..+.+.+...
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            348999999999999999999999999999998876543

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.90  E-value=0.031  Score=41.91  Aligned_cols=92  Identities=25%  Similarity=0.303  Sum_probs=58.5

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCC-CEEEEE-cCCCCCCC---------C--cccccChhhhhcCCcEEEEeccCChhhh
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFG-FIISYN-SRRKRPSV---------L--FPYCANVYDLAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G-~~V~~~-~~~~~~~~---------~--~~~~~~l~el~~~aDiv~~~~p~t~~t~  145 (223)
                      .+|||+| .|-.|+.+.+.|..+- +++.+. +++.....         .  .....+.+++.+++|++++++|.... .
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s-~   80 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS-Y   80 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH-H
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHH-H
Confidence            4799999 5999999999998753 465544 33322211         0  11234566777889999999996543 2


Q ss_pred             hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 035615          146 HIINKDVMAELGKGGMIINVGRGALIDEKEMLQ  178 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~  178 (223)
                           +..... .+..+||.|-.==.+....++
T Consensus        81 -----~~~~~~-~~~~VIDlSadfRl~~~~~y~  107 (176)
T d1vkna1          81 -----DLVREL-KGVKIIDLGADFRFDDPGVYR  107 (176)
T ss_dssp             -----HHHTTC-CSCEEEESSSTTTCSSHHHHH
T ss_pred             -----HHHHhh-ccceEEecCccccccchhhHH
Confidence                 222333 578999998655554444443

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.007  Score=47.67  Aligned_cols=38  Identities=26%  Similarity=0.273  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .|+||++.|.|. +.||+++|+.|...|++|+..+|+.+
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~   42 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA   42 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            489999999995 78999999999999999999998753

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.011  Score=46.86  Aligned_cols=90  Identities=14%  Similarity=0.143  Sum_probs=55.7

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCC--hhhhhccCHH
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALT--EQTHHIINKD  151 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t--~~t~~li~~~  151 (223)
                      ..|+||++.|.|. +.||+++|+.|...|++|++.+|+....+..  ...+.+.-...+++.+.+-.+  ++.+.+++ .
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~--~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~-~   82 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEEL--AAECKSAGYPGTLIPYRCDLSNEEDILSMFS-A   82 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH--HHHHHHTTCSSEEEEEECCTTCHHHHHHHHH-H
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH--HHHHHhcCCCceEEEEEccCCCHHHHHHHHH-H
Confidence            4599999999995 7899999999999999999998865321110  011111112346666666444  33445553 3


Q ss_pred             HHhcCCCCcEEEEcCC
Q 035615          152 VMAELGKGGMIINVGR  167 (223)
Q Consensus       152 ~l~~mk~ga~lIN~ar  167 (223)
                      ..+...+=-++||.+-
T Consensus        83 ~~~~~g~iD~lVnnAg   98 (257)
T d1xg5a_          83 IRSQHSGVDICINNAG   98 (257)
T ss_dssp             HHHHHCCCSEEEECCC
T ss_pred             HHHhcCCCCEEEeccc
Confidence            3343443346676663

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0061  Score=42.99  Aligned_cols=36  Identities=28%  Similarity=0.207  Sum_probs=32.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS  115 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~  115 (223)
                      |++.|||.|.||-.+|..++.+|.+|..+.+...-.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l   58 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL   58 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc
Confidence            789999999999999999999999999998876543

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.86  E-value=0.0049  Score=49.60  Aligned_cols=55  Identities=13%  Similarity=0.095  Sum_probs=42.0

Q ss_pred             HHHcCCCCCCCC-CCCccccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           59 YVRAGLWAKTGD-YPLGFKLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        59 ~~~~~~w~~~~~-~~~~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .+++..|..... ..+..+|+||++.|-| .|.||+++|+.|...|++|++.+|+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~   60 (294)
T d1w6ua_           4 ALQSKFFSPLQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD   60 (294)
T ss_dssp             HHHHHHSCCCCSCCSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             hhhhhhcCcccccCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            344555653322 1223589999999999 599999999999999999999998754

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=95.85  E-value=0.0018  Score=51.70  Aligned_cols=38  Identities=26%  Similarity=0.291  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .|+||++.|.|. +.||+++|+.|...|++|+..+|+.+
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNRE   40 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            589999999996 66999999999999999999998653

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.85  E-value=0.026  Score=42.39  Aligned_cols=87  Identities=16%  Similarity=0.197  Sum_probs=51.7

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHhC-CCEEEEE-cCCCCCCC-----------C-cccccChhhhhcCCcEEEEeccCChh
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQAF-GFIISYN-SRRKRPSV-----------L-FPYCANVYDLAVNSDVLVVCCALTEQ  143 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~-~~~~~~~~-----------~-~~~~~~l~el~~~aDiv~~~~p~t~~  143 (223)
                      ..+|||+| .|-.|+.+.+.|... .+++... +++.....           . .......++.++++|++++++|....
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s   84 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTT   84 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHH
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchH
Confidence            45799999 599999999999875 3465543 33332211           0 01112234567899999999996633


Q ss_pred             hhhccCHHHHhcCCCCcEEEEcCCCccc
Q 035615          144 THHIINKDVMAELGKGGMIINVGRGALI  171 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga~lIN~arg~~v  171 (223)
                            .+....+.....+|+.+.+.-.
T Consensus        85 ------~~~~~~l~~~~~~v~~~~~~~~  106 (183)
T d2cvoa1          85 ------QEIIKGLPQELKIVDLSADFRL  106 (183)
T ss_dssp             ------HHHHHTSCSSCEEEECSSTTTC
T ss_pred             ------HHHHHHHHhcCcccccchhhhc
Confidence                  2333334444455555444433

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.84  E-value=0.0049  Score=48.69  Aligned_cols=38  Identities=13%  Similarity=0.297  Sum_probs=33.3

Q ss_pred             cccCCCEEEEEecC---hHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           75 FKLGGMQVGIVRLG---NIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        75 ~~l~g~~vgIiG~G---~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      .+|+||++.|.|.+   .||+++|++|...|++|++.+++.
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            46899999999974   499999999999999998877764

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.80  E-value=0.0062  Score=42.59  Aligned_cols=36  Identities=17%  Similarity=0.201  Sum_probs=32.1

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      .+++.|||.|.||-.+|..++.+|++|..+.+...-
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~l   57 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF   57 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeeccc
Confidence            378999999999999999999999999988776554

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.78  E-value=0.0038  Score=46.51  Aligned_cols=36  Identities=11%  Similarity=0.224  Sum_probs=32.2

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKR  113 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~  113 (223)
                      .+|+|.|||.|..|-..|..|+..|++ |.++++...
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            479999999999999999999999995 888887654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=95.75  E-value=0.0025  Score=50.26  Aligned_cols=38  Identities=21%  Similarity=0.316  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .|.||++.|.|. +.||+++|+.|...|++|+..+|+.+
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER   40 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            388999999997 55999999999999999999888754

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.75  E-value=0.0057  Score=45.74  Aligned_cols=61  Identities=10%  Similarity=0.013  Sum_probs=41.7

Q ss_pred             CCEEEEEecChHHHHHH--HHHHh-CC---CEEEEEcCCCCCCC-------------C----cccccChhhhhcCCcEEE
Q 035615           79 GMQVGIVRLGNIGSEVL--NRLQA-FG---FIISYNSRRKRPSV-------------L----FPYCANVYDLAVNSDVLV  135 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a--~~l~~-~G---~~V~~~~~~~~~~~-------------~----~~~~~~l~el~~~aDiv~  135 (223)
                      ..+|.|||.|..|...+  ..++. ..   -++..+|..++..+             +    .....+..|.++.||+|+
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv   82 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM   82 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence            45899999999886532  33332 22   36889998765432             1    112467889999999999


Q ss_pred             Eecc
Q 035615          136 VCCA  139 (223)
Q Consensus       136 ~~~p  139 (223)
                      ++.-
T Consensus        83 itag   86 (167)
T d1u8xx1          83 AHIR   86 (167)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9974

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.74  E-value=0.0082  Score=40.09  Aligned_cols=58  Identities=17%  Similarity=0.184  Sum_probs=40.1

Q ss_pred             CEEEEEecChHHH-HHHHHHHhCCCEEEEEcCCCCCC------CCccc-ccChhhhhcCCcEEEEe
Q 035615           80 MQVGIVRLGNIGS-EVLNRLQAFGFIISYNSRRKRPS------VLFPY-CANVYDLAVNSDVLVVC  137 (223)
Q Consensus        80 ~~vgIiG~G~iG~-~~a~~l~~~G~~V~~~~~~~~~~------~~~~~-~~~l~el~~~aDiv~~~  137 (223)
                      ++|=+||.|.+|. ++|+.|+..|++|.++|+...+.      .+... ...-.+.+...|+|+..
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~S   67 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKT   67 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEEC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEe
Confidence            6788999999998 67999999999999999875431      12211 11122335667777664

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.74  E-value=0.0087  Score=47.05  Aligned_cols=38  Identities=18%  Similarity=0.321  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      +|+||++.|.|. +.||+++|+.|...|++|+..+|+.+
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS   40 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            488999999996 67999999999999999999988653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.74  E-value=0.0022  Score=47.71  Aligned_cols=87  Identities=20%  Similarity=0.166  Sum_probs=58.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----Cccc-----ccChhhhh-----cCCcEEEEeccCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----LFPY-----CANVYDLA-----VNSDVLVVCCALT  141 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~-----~~~l~el~-----~~aDiv~~~~p~t  141 (223)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++++.+     +...     .++.++..     ...|+++.++...
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~  111 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ  111 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcc
Confidence            38899999999999999999999887 5677777654322     1111     11122222     2378888877632


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcCCCc
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVGRGA  169 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~arg~  169 (223)
                       .+   + +..+..++++..++.++-+.
T Consensus       112 -~~---~-~~a~~~l~~~G~iv~~G~~~  134 (172)
T d1h2ba2         112 -AT---V-DYTPYLLGRMGRLIIVGYGG  134 (172)
T ss_dssp             -HH---H-HHGGGGEEEEEEEEECCCSS
T ss_pred             -hH---H-HHHHHHHhCCCEEEEEeCcc
Confidence             22   2 34567788899888887554

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.74  E-value=0.0075  Score=42.39  Aligned_cols=37  Identities=24%  Similarity=0.211  Sum_probs=33.7

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS  115 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~  115 (223)
                      ++++.|||.|.+|-.+|..|+..|.+|..+.+.+...
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l   66 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM   66 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeeccccc
Confidence            6899999999999999999999999999998877543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.73  E-value=0.0023  Score=51.03  Aligned_cols=38  Identities=21%  Similarity=0.308  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      +|+||++.|-|. +.||+++|+.|...|++|+..+|+.+
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   43 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQK   43 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            589999999996 57999999999999999999988653

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.72  E-value=0.013  Score=43.84  Aligned_cols=93  Identities=14%  Similarity=0.216  Sum_probs=57.4

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhC-CCEEEEE-cCCCCCC--C----------C-----cccccChhhhhcCCcEEEEecc
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAF-GFIISYN-SRRKRPS--V----------L-----FPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~-~~~~~~~--~----------~-----~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      .+|+|+| .|-.|+.+.+.|... .+++... .+.....  +          +     .....+.+.....+|++++++|
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp   81 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA   81 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence            4899999 699999999999986 6676543 2221111  1          0     0112334455678999999998


Q ss_pred             CChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 035615          140 LTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEML  177 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~  177 (223)
                      ..... ..    .-...+.+..+|+.|..--.+....+
T Consensus        82 ~~~s~-~~----~~~~~~~~~~vIDlSadfRl~~~~~~  114 (179)
T d2g17a1          82 HEVSH-DL----APQFLQAGCVVFDLSGAFRVNDRAFY  114 (179)
T ss_dssp             HHHHH-HH----HHHHHHTTCEEEECSSTTSSSCHHHH
T ss_pred             chhHH-HH----hhhhhhcCceeecccccccccccccc
Confidence            43222 11    11224578899999876555544443

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.71  E-value=0.0033  Score=49.79  Aligned_cols=38  Identities=13%  Similarity=0.155  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .|+||++.|-|. +.||+++|+.|...|++|++.+|+.+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~   41 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE   41 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999996 77999999999999999999988753

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0017  Score=48.37  Aligned_cols=87  Identities=20%  Similarity=0.209  Sum_probs=58.1

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc---c--cChhhhh------cCCcEEEEeccC
Q 035615           78 GGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY---C--ANVYDLA------VNSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~---~--~~l~el~------~~aDiv~~~~p~  140 (223)
                      .|.+|.|.|. |.+|....+.++.+|++|++.++++++.+     ++..   +  .++.+-+      ...|+++-++. 
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g-  106 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA-  106 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH-
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeeccc-
Confidence            4889999995 99999999999999999998876654321     2211   1  1222221      23677776653 


Q ss_pred             ChhhhhccCHHHHhcCCCCcEEEEcCCCcc
Q 035615          141 TEQTHHIINKDVMAELGKGGMIINVGRGAL  170 (223)
Q Consensus       141 t~~t~~li~~~~l~~mk~ga~lIN~arg~~  170 (223)
                       ..   .+ ...++.++++..+|.++..+-
T Consensus       107 -~~---~~-~~~~~~l~~~G~iv~~G~~~~  131 (174)
T d1yb5a2         107 -NV---NL-SKDLSLLSHGGRVIVVGSRGT  131 (174)
T ss_dssp             -HH---HH-HHHHHHEEEEEEEEECCCCSC
T ss_pred             -HH---HH-HHHHhccCCCCEEEEEecCCC
Confidence             11   12 456778899999998875443

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.68  E-value=0.012  Score=46.19  Aligned_cols=37  Identities=19%  Similarity=0.127  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      .|+||++.|-|. +.||+++|+.|...|++|+..+|+.
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            478999999996 6799999999999999999998864

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.66  E-value=0.0084  Score=42.15  Aligned_cols=37  Identities=22%  Similarity=0.219  Sum_probs=33.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      .+++|.|||.|.+|-.+|..|..+|.+|..+.+.+..
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            4789999999999999999999999999999877654

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0057  Score=52.42  Aligned_cols=80  Identities=18%  Similarity=0.124  Sum_probs=56.5

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------------C-----------------c--c----
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------------L-----------------F--P----  119 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~-----------------~--~----  119 (223)
                      |++++|.|||+|.+|..+++.|...|+ ++..+|...-...             +                 .  .    
T Consensus        35 l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  114 (426)
T d1yovb1          35 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN  114 (426)
T ss_dssp             HHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred             HhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence            688999999999999999999998898 5777775431100             0                 0  0    


Q ss_pred             -cccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCC
Q 035615          120 -YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG  157 (223)
Q Consensus       120 -~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk  157 (223)
                       .....+++++++|+|+.++- +.+++..+++......|
T Consensus       115 ~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~k  152 (426)
T d1yovb1         115 KIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLLN  152 (426)
T ss_dssp             CGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTCC
T ss_pred             cccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhhc
Confidence             01223567899999988774 66778888877665443

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.011  Score=44.54  Aligned_cols=39  Identities=13%  Similarity=0.106  Sum_probs=35.2

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      ....+|+|.|||-|..|-..|..|+..|++|..|++.+.
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            446789999999999999999999999999999998764

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.63  E-value=0.0045  Score=43.64  Aligned_cols=32  Identities=16%  Similarity=0.136  Sum_probs=29.4

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRR  111 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  111 (223)
                      +++.|||.|.||-.+|..++.+|.+|..+.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            57999999999999999999999999887764

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.0035  Score=49.48  Aligned_cols=38  Identities=16%  Similarity=0.173  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      +|+||++.|-|. +.||+++|++|...|++|+..+|+.+
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~   39 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSEN   39 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999995 77999999999999999999988753

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.62  E-value=0.0098  Score=46.63  Aligned_cols=64  Identities=19%  Similarity=0.097  Sum_probs=47.4

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCccc-------c-------cChhhhhcCCcEEEEecc
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPY-------C-------ANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~-------~-------~~l~el~~~aDiv~~~~p  139 (223)
                      .|+||++.|.|. +.||+++|+.|...|++|+..+|+.+.......       .       ....+-+..-|+++.+..
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG   82 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAG   82 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEEEecCCHHHHHHHHHHHHHhcCCceEEEeeec
Confidence            489999999997 569999999999999999999987765542211       1       112233457899998863

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.61  E-value=0.014  Score=45.97  Aligned_cols=63  Identities=22%  Similarity=0.107  Sum_probs=45.4

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------Cc-------ccccChhhhhcCCcEEEEe
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------LF-------PYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------~~-------~~~~~l~el~~~aDiv~~~  137 (223)
                      .+||.|.| .|.||+.+++.|...|++|++.+|+.....             ++       ....++.+.+..++.++.+
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~   82 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   82 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence            45699999 599999999999999999999988754321             11       1123345567788888777


Q ss_pred             ccCC
Q 035615          138 CALT  141 (223)
Q Consensus       138 ~p~t  141 (223)
                      .+..
T Consensus        83 ~~~~   86 (312)
T d1qyda_          83 LAGG   86 (312)
T ss_dssp             CCCS
T ss_pred             hhhc
Confidence            6543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.61  E-value=0.016  Score=43.12  Aligned_cols=38  Identities=21%  Similarity=0.198  Sum_probs=33.6

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPS  115 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~  115 (223)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.|++.++.
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl   65 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKF   65 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHH
Confidence            48999999999999999999999997 688898877553

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.60  E-value=0.005  Score=43.37  Aligned_cols=38  Identities=13%  Similarity=0.064  Sum_probs=34.0

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV  116 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~  116 (223)
                      .+++.|||.|-||-.+|..+..+|++|..+.+.+....
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~   62 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP   62 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCc
Confidence            47899999999999999999999999999988776543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.58  E-value=0.0076  Score=43.73  Aligned_cols=36  Identities=14%  Similarity=0.156  Sum_probs=31.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCC--CEEEEEcCCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFG--FIISYNSRRKR  113 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~  113 (223)
                      +||+|.|||.|..|-.+|..|+..+  .+|+.+++.+.
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            4899999999999999999999877  47888887663

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=95.51  E-value=0.0074  Score=47.60  Aligned_cols=38  Identities=18%  Similarity=0.129  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++..
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            489999999996 67999999999999999999888653

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0031  Score=50.42  Aligned_cols=39  Identities=26%  Similarity=0.300  Sum_probs=34.8

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      ..|+||++.|.|. +.||+++|+.|...|++|+..+|+.+
T Consensus        10 ~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~   49 (269)
T d1xu9a_          10 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE   49 (269)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3499999999996 56999999999999999999998754

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=95.49  E-value=0.0043  Score=49.29  Aligned_cols=86  Identities=14%  Similarity=0.116  Sum_probs=53.8

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhc--CCcEEEEeccCCh--hhhhccC
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAV--NSDVLVVCCALTE--QTHHIIN  149 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~--~aDiv~~~~p~t~--~t~~li~  149 (223)
                      .+|+||++.|.|. +.||+++|+.|...|++|+..+|+.+....     ..+++.+  ..++..+.+-.+.  +...+++
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~-----~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~   79 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVE-----VTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQ   79 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHH-----HHHHHHHHHTCCEEEEECCTTCHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-----HHHHHHHHhCCceEEEEccCCCHHHHHHHHH
Confidence            4689999999996 569999999999999999999987654321     1122221  2455555554332  3344442


Q ss_pred             HHHHhcCCCCcEEEEcC
Q 035615          150 KDVMAELGKGGMIINVG  166 (223)
Q Consensus       150 ~~~l~~mk~ga~lIN~a  166 (223)
                       +..+...+=-++||.+
T Consensus        80 -~~~~~~g~iDilVnnA   95 (260)
T d1h5qa_          80 -QIDADLGPISGLIANA   95 (260)
T ss_dssp             -HHHHHSCSEEEEEECC
T ss_pred             -HHHHHhCCCcEecccc
Confidence             3334444334577765

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.44  E-value=0.0028  Score=47.36  Aligned_cols=84  Identities=23%  Similarity=0.277  Sum_probs=55.1

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc-----ccChhhhh------cCCcEEEEeccC
Q 035615           78 GGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY-----CANVYDLA------VNSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~-----~~~l~el~------~~aDiv~~~~p~  140 (223)
                      .|.+|.|.| .|.+|...++.++.+|++|++..+++++.+     ++..     ..++.+-+      ...|+++-++. 
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g-  103 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA-  103 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC-
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEeccc-
Confidence            478999988 599999999999999999988776543211     1111     12232221      34788877765 


Q ss_pred             ChhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          141 TEQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       141 t~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      .+ +   + ...++.++++..+|+++.
T Consensus       104 ~~-~---~-~~~~~~l~~~G~~v~~G~  125 (183)
T d1pqwa_         104 GE-A---I-QRGVQILAPGGRFIELGK  125 (183)
T ss_dssp             TH-H---H-HHHHHTEEEEEEEEECSC
T ss_pred             ch-H---H-HHHHHHhcCCCEEEEEcc
Confidence            11 1   1 345677788888888764

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.42  E-value=0.0051  Score=48.73  Aligned_cols=85  Identities=15%  Similarity=0.257  Sum_probs=52.9

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhc--CCcEEEEeccCCh--hhhhccCH
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAV--NSDVLVVCCALTE--QTHHIINK  150 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~--~aDiv~~~~p~t~--~t~~li~~  150 (223)
                      +|+||++.|.|. +.||+++|+.|...|++|++.+|+.++...     ..+++.+  ..+++.+.+-.+.  +.+.+++ 
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~-----~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~-   75 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASE-----AAQKLTEKYGVETMAFRCDVSNYEEVKKLLE-   75 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-----HHHHHHHHHCCCEEEEECCTTCHHHHHHHHH-
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-----HHHHHHHHhCCcEEEEEccCCCHHHHHHHHH-
Confidence            589999999996 679999999999999999999887543211     1122221  2455555554442  3444443 


Q ss_pred             HHHhcCCCCcEEEEcC
Q 035615          151 DVMAELGKGGMIINVG  166 (223)
Q Consensus       151 ~~l~~mk~ga~lIN~a  166 (223)
                      +..+.+.+=-++||.+
T Consensus        76 ~~~~~~g~iDiLVnnA   91 (251)
T d1vl8a_          76 AVKEKFGKLDTVVNAA   91 (251)
T ss_dssp             HHHHHHSCCCEEEECC
T ss_pred             HHHHHcCCCCEEEECC
Confidence            3333343334566654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.38  E-value=0.009  Score=42.25  Aligned_cols=37  Identities=16%  Similarity=0.038  Sum_probs=33.3

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS  115 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~  115 (223)
                      .+++.|||.|-||-.+|..++.+|.+|..+.+.+.-.
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il   62 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM   62 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc
Confidence            4789999999999999999999999999998876543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.36  E-value=0.014  Score=40.79  Aligned_cols=36  Identities=22%  Similarity=0.204  Sum_probs=32.5

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      ++++.|||.|.+|-.+|..|..+|.+|..+.+.+.-
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF   67 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence            578999999999999999999999999999876643

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=95.35  E-value=0.008  Score=47.75  Aligned_cols=87  Identities=18%  Similarity=0.144  Sum_probs=53.7

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCC--hhhhhccCHHHH
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALT--EQTHHIINKDVM  153 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t--~~t~~li~~~~l  153 (223)
                      |+||++.|-|. +.||+++|+.|...|++|+..+|+.+..+..  ...+.+......++.+.+-.+  ++.+.+++ +..
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~--~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~-~~~   78 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEAS--KAAVLETAPDAEVLTTVADVSDEAQVEAYVT-ATT   78 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH--HHHHHHHCTTCCEEEEECCTTSHHHHHHHHH-HHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH--HHHHHhhCCCCeEEEEeccCCCHHHHHHHHH-HHH
Confidence            78999999996 5799999999999999999999875432110  112222233456666655433  23444543 333


Q ss_pred             hcCCCCcEEEEcC
Q 035615          154 AELGKGGMIINVG  166 (223)
Q Consensus       154 ~~mk~ga~lIN~a  166 (223)
                      +.+.+=-+|||.+
T Consensus        79 ~~~G~iDiLVnnA   91 (258)
T d1iy8a_          79 ERFGRIDGFFNNA   91 (258)
T ss_dssp             HHHSCCSEEEECC
T ss_pred             HHhCCCCEEEECC
Confidence            3343334666643

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.30  E-value=0.0078  Score=44.13  Aligned_cols=84  Identities=12%  Similarity=0.197  Sum_probs=52.3

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHhCCC---EEEEEcCCCCCCC-------CcccccChhhhhcCCcEEEEeccCChhhhhc
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQAFGF---IISYNSRRKRPSV-------LFPYCANVYDLAVNSDVLVVCCALTEQTHHI  147 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~~G~---~V~~~~~~~~~~~-------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~l  147 (223)
                      |-+|||||. |-.|+.+.+.|....+   ++.+...+.....       ........++...+.|++++++|... +...
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~-s~~~   79 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSST-SAKY   79 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHH-HHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccc-hhhH
Confidence            458999996 9999999999987654   3444432211111       01112344566788999999998332 2222


Q ss_pred             cCHHHHhcCCCCcEEEEcCC
Q 035615          148 INKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       148 i~~~~l~~mk~ga~lIN~ar  167 (223)
                          ..+..+.+..+|+.|.
T Consensus        80 ----~~~~~~~~~~VIDlSs   95 (154)
T d2gz1a1          80 ----APYAVKAGVVVVDNTS   95 (154)
T ss_dssp             ----HHHHHHTTCEEEECSS
T ss_pred             ----HhhhccccceehhcCh
Confidence                2233467899999873

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.25  E-value=0.011  Score=40.83  Aligned_cols=37  Identities=24%  Similarity=0.205  Sum_probs=33.2

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS  115 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~  115 (223)
                      .+++.|||-|.+|-.+|..++.+|.+|..+.+.+.-.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il   57 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL   57 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc
Confidence            3789999999999999999999999999998876543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.19  E-value=0.016  Score=41.23  Aligned_cols=38  Identities=16%  Similarity=0.124  Sum_probs=34.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS  115 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~  115 (223)
                      .++++.|||-|.+|-.+|..++..|.+|.++.+.+...
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l   71 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL   71 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccccc
Confidence            37899999999999999999999999999999877654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.076  Score=42.71  Aligned_cols=89  Identities=17%  Similarity=0.266  Sum_probs=56.0

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhh---cCCcEEEEeccCC--hhhhhcc
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLA---VNSDVLVVCCALT--EQTHHII  148 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~---~~aDiv~~~~p~t--~~t~~li  148 (223)
                      -.|+||++.|.|. +.||+++|+.|...|++|++.+|+.+.....  ...+.+-+   ....++.+.+-.+  ++.+.++
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~--~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~   85 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSA--ADELQANLPPTKQARVIPIQCNIRNEEEVNNLV   85 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH--HHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH--HHHHHhhhccccCceEEEEeccCCCHHHHHHHH
Confidence            3599999999996 6799999999999999999999875432111  11111111   2346666666444  2344555


Q ss_pred             CHHHHhcCCCCcEEEEcC
Q 035615          149 NKDVMAELGKGGMIINVG  166 (223)
Q Consensus       149 ~~~~l~~mk~ga~lIN~a  166 (223)
                      + +..+.+.+=-++||.+
T Consensus        86 ~-~~~~~~G~iDiLVnnA  102 (297)
T d1yxma1          86 K-STLDTFGKINFLVNNG  102 (297)
T ss_dssp             H-HHHHHHSCCCEEEECC
T ss_pred             H-HHHHHhCCeEEEEeec
Confidence            3 3334444445677765

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.16  E-value=0.017  Score=45.14  Aligned_cols=37  Identities=11%  Similarity=0.295  Sum_probs=32.7

Q ss_pred             cCCCEEEEEecCh---HHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           77 LGGMQVGIVRLGN---IGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        77 l~g~~vgIiG~G~---iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      |+||++.|.|.+.   ||+++|+.|...|++|+..+++.+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            8899999999764   999999999999999998887643

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.11  E-value=0.0057  Score=48.53  Aligned_cols=38  Identities=16%  Similarity=0.120  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .|+||++.|.|. +.||+++|+.|...|++|+..+|+.+
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLE   40 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            388999999996 88999999999999999999988643

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=95.11  E-value=0.0038  Score=49.86  Aligned_cols=39  Identities=23%  Similarity=0.176  Sum_probs=34.6

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      ++|+||++.|.|. +.||+++|+.|...|++|++.+|+.+
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~   42 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE   42 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            4699999999985 78999999999999999999888653

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.11  E-value=0.017  Score=42.75  Aligned_cols=38  Identities=24%  Similarity=0.218  Sum_probs=33.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPS  115 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~  115 (223)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++++.
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~   66 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF   66 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHH
Confidence            48999999999999999999999986 788888877653

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=95.09  E-value=0.0063  Score=48.81  Aligned_cols=38  Identities=24%  Similarity=0.290  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .|+||++.|-|. +.||+++|+.|...|++|+..+|+.+
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAE   40 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            488999999995 79999999999999999999988753

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.06  E-value=0.014  Score=44.65  Aligned_cols=35  Identities=20%  Similarity=0.186  Sum_probs=31.8

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      +.++|.|||.|-.|-+.|..|+..|++|.++++..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            35689999999999999999999999999998753

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=95.03  E-value=0.025  Score=44.00  Aligned_cols=36  Identities=17%  Similarity=0.184  Sum_probs=32.1

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      -|+|.|.|. |.||+.+++.|...|++|.+++|.+..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            578999995 999999999999999999999987654

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=95.01  E-value=0.008  Score=47.04  Aligned_cols=64  Identities=19%  Similarity=0.206  Sum_probs=42.4

Q ss_pred             CCCEEEEEecChHH----HHHHHHHHhC--CCEEE-EEcCCCCCCC---------CcccccChhhhhc--CCcEEEEecc
Q 035615           78 GGMQVGIVRLGNIG----SEVLNRLQAF--GFIIS-YNSRRKRPSV---------LFPYCANVYDLAV--NSDVLVVCCA  139 (223)
Q Consensus        78 ~g~~vgIiG~G~iG----~~~a~~l~~~--G~~V~-~~~~~~~~~~---------~~~~~~~l~el~~--~aDiv~~~~p  139 (223)
                      +-.+|||||+|.+|    +.-...++..  +++++ ++|++.+...         ....+.+++++++  +-|+|++++|
T Consensus        15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp   94 (237)
T d2nvwa1          15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK   94 (237)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred             CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCC
Confidence            44689999999854    4444445543  57866 6787654321         2234679999985  5678999987


Q ss_pred             CC
Q 035615          140 LT  141 (223)
Q Consensus       140 ~t  141 (223)
                      ..
T Consensus        95 ~~   96 (237)
T d2nvwa1          95 VP   96 (237)
T ss_dssp             HH
T ss_pred             Cc
Confidence            43

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.99  E-value=0.0059  Score=48.33  Aligned_cols=39  Identities=15%  Similarity=0.060  Sum_probs=34.4

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      ..|.||++.|.|. +.||+++|+.|...|++|+..+|+.+
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~   45 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQK   45 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            4588999999996 68999999999999999999988653

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.98  E-value=0.0039  Score=49.70  Aligned_cols=39  Identities=21%  Similarity=0.348  Sum_probs=34.7

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      +.|+||++.|.|. +.||+++|+.|...|++|+..+|+.+
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~   43 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEY   43 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4589999999996 66999999999999999999988754

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.97  E-value=0.027  Score=46.00  Aligned_cols=61  Identities=18%  Similarity=0.245  Sum_probs=44.3

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCCC-------c-----ccccChhhhhcCCcEEEEec
Q 035615           78 GGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSVL-------F-----PYCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        78 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~-------~-----~~~~~l~el~~~aDiv~~~~  138 (223)
                      .+++|.|.| .|-||+.+++.|...|++|+++|+.......       +     .....+.++++..|.|+-+.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            689999999 6999999999999999999999765443210       0     11123445677899877654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.93  E-value=0.019  Score=44.34  Aligned_cols=37  Identities=16%  Similarity=0.142  Sum_probs=33.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      ..++|.|||.|..|-.+|..|+..|++|.++++.+..
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~   39 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP   39 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            3678999999999999999999999999999986543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.91  E-value=0.004  Score=49.52  Aligned_cols=38  Identities=18%  Similarity=0.206  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .|+||++.|-|. +.||+++|+.|...|++|+..+|+.+
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   46 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD   46 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            589999999996 67999999999999999999988653

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=94.89  E-value=0.038  Score=43.45  Aligned_cols=87  Identities=15%  Similarity=0.168  Sum_probs=53.6

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCC-h--hhhhccCHH
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALT-E--QTHHIINKD  151 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t-~--~t~~li~~~  151 (223)
                      +|+||++.|.|. +.||.++|+.|...|++|+...|..+...   ....+.+......+.+..+-.+ +  +.+.+++ +
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~   77 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPT---ALAELKAINPKVNITFHTYDVTVPVAESKKLLK-K   77 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHH---HHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHH-H
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHH---HHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHH-H
Confidence            589999999996 57999999999999999877765544321   1122334445556666665544 2  2444443 2


Q ss_pred             HHhcCCCCcEEEEcC
Q 035615          152 VMAELGKGGMIINVG  166 (223)
Q Consensus       152 ~l~~mk~ga~lIN~a  166 (223)
                      ..+...+=-+|||.+
T Consensus        78 ~~~~~g~iDilvnnA   92 (254)
T d1sbya1          78 IFDQLKTVDILINGA   92 (254)
T ss_dssp             HHHHHSCCCEEEECC
T ss_pred             HHHHcCCCCEEEeCC
Confidence            333333323566654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.89  E-value=0.0053  Score=49.00  Aligned_cols=40  Identities=20%  Similarity=0.116  Sum_probs=35.1

Q ss_pred             CccccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           73 LGFKLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        73 ~~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      .+..|+||++.|.| .+.||+++|+.|...|++|++.+++.
T Consensus        12 ~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          12 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            34669999999999 58999999999999999998877654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=94.87  E-value=0.021  Score=46.26  Aligned_cols=38  Identities=21%  Similarity=0.109  Sum_probs=34.1

Q ss_pred             cCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           77 LGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        77 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      .+||+|.|.| .|-||+.+++.|...|++|.+++|....
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            4689999999 6999999999999999999999987653

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.83  E-value=0.0089  Score=45.08  Aligned_cols=60  Identities=15%  Similarity=0.042  Sum_probs=42.1

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCCCE--EEEEcCCCCCCC----C-------cccccChhhhhcCCcEEEEecc
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFGFI--ISYNSRRKRPSV----L-------FPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G~~--V~~~~~~~~~~~----~-------~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      +||.|.| .|.||+.+++.|...|.+  |+...|++....    .       .....++.++++.+|.|+.+..
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEe
Confidence            6899999 699999999999988865  555666543211    1       1123445677889999887653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.81  E-value=0.0081  Score=44.23  Aligned_cols=84  Identities=18%  Similarity=0.142  Sum_probs=55.7

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----Cccc-----ccCh-hhhh-----cCCcEEEEecc
Q 035615           78 GGMQVGIVRL-GNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----LFPY-----CANV-YDLA-----VNSDVLVVCCA  139 (223)
Q Consensus        78 ~g~~vgIiG~-G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~-----~~~l-~el~-----~~aDiv~~~~p  139 (223)
                      .|.+|.|+|. |.+|...++.++..|. +|++.++++++.+     ++..     ..+. +++.     ...|+++-+..
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g  106 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN  106 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccc
Confidence            4789999995 9999999999999885 7888887765432     2211     1122 2222     23788887765


Q ss_pred             CChhhhhccCHHHHhcCCCCcEEEEcC
Q 035615          140 LTEQTHHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       140 ~t~~t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                       .+.+.    +..+..++++..++.++
T Consensus       107 -~~~~~----~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2         107 -SEKTL----SVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             -CHHHH----TTGGGGEEEEEEEEECC
T ss_pred             -cchHH----HhhhhhcccCCEEEEec
Confidence             32222    23456788888888876

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.77  E-value=0.019  Score=44.78  Aligned_cols=56  Identities=16%  Similarity=0.280  Sum_probs=42.2

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhc--CCcEEEEec
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAV--NSDVLVVCC  138 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~--~aDiv~~~~  138 (223)
                      ++|.|.|. |-||+.+++.|...|++|++.+|..-.   .....+++++++  ..|+|+-+.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D---~~d~~~~~~~l~~~~~d~vih~a   60 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLD---ITNVLAVNKFFNEKKPNVVINCA   60 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCC---TTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhcc---CCCHHHHHHHHHHcCCCEEEeec
Confidence            57999996 999999999999999999999986532   222334556665  568876554

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=94.69  E-value=0.016  Score=45.56  Aligned_cols=38  Identities=13%  Similarity=0.140  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEec-Ch--HHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GN--IGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~--iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .|+||++.|.|. |.  ||+++|+.|...|++|+..+++..
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~   43 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL   43 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChH
Confidence            388999999995 54  999999999999999998877653

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=94.68  E-value=0.024  Score=44.89  Aligned_cols=38  Identities=16%  Similarity=0.162  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .|+||++.|.|. +.||+++|+.|...|++|+..+|+.+
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD   41 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999995 67999999999999999999988653

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.68  E-value=0.014  Score=45.90  Aligned_cols=36  Identities=22%  Similarity=0.188  Sum_probs=32.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      ..|+|.|||.|..|-..|..|+..|++|.+++....
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~   64 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER   64 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            457999999999999999999999999999987643

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.66  E-value=0.012  Score=43.97  Aligned_cols=84  Identities=18%  Similarity=0.155  Sum_probs=59.3

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc-----ccC-hhhhh-----cCCcEEEEeccC
Q 035615           78 GGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY-----CAN-VYDLA-----VNSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~-----~~~-l~el~-----~~aDiv~~~~p~  140 (223)
                      .|.+|.|.|. |.+|+..++.++..|++|++..+++++.+     ++..     ..+ .++++     ...|+|+-++. 
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-  107 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG-  107 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-
Confidence            4899999997 77999999999999999999887654321     1110     111 22222     34889888874 


Q ss_pred             ChhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          141 TEQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       141 t~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                       .++   + ++.++.++++..++.++.
T Consensus       108 -~~~---~-~~~~~~l~~~G~~v~~G~  129 (182)
T d1v3va2         108 -GEF---L-NTVLSQMKDFGKIAICGA  129 (182)
T ss_dssp             -HHH---H-HHHGGGEEEEEEEEECCC
T ss_pred             -chh---h-hhhhhhccCCCeEEeecc
Confidence             222   1 467888999999999875

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=94.58  E-value=0.017  Score=45.44  Aligned_cols=85  Identities=11%  Similarity=0.109  Sum_probs=51.8

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCCh--hhhhccCHHH
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTE--QTHHIINKDV  152 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~--~t~~li~~~~  152 (223)
                      .|+||++.|-|. +.||+++|+.|...|++|+..+|+.+..+.     -.+++-...++..+.+-.++  +.+.+++ +.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~-----~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~-~~   76 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEK-----AAKSVGTPDQIQFFQHDSSDEDGWTKLFD-AT   76 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-----HHHHHCCTTTEEEEECCTTCHHHHHHHHH-HH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-----HHHHhCCCCcEEEEEccCCCHHHHHHHHH-HH
Confidence            389999999995 779999999999999999999886532210     11122223345555554332  3344443 23


Q ss_pred             HhcCCCCcEEEEcC
Q 035615          153 MAELGKGGMIINVG  166 (223)
Q Consensus       153 l~~mk~ga~lIN~a  166 (223)
                      .+.+.+=-++||.+
T Consensus        77 ~~~~G~iDiLVnnA   90 (251)
T d1zk4a1          77 EKAFGPVSTLVNNA   90 (251)
T ss_dssp             HHHHSSCCEEEECC
T ss_pred             HHHhCCceEEEecc
Confidence            33333333677665

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=94.55  E-value=0.0078  Score=47.68  Aligned_cols=38  Identities=18%  Similarity=0.256  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .|+||++.|.|. +.||+++|+.|...|++|+..+|+.+
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~   41 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA   41 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999995 67999999999999999999998653

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.048  Score=42.58  Aligned_cols=37  Identities=14%  Similarity=0.105  Sum_probs=33.5

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      |+||++.|.|. +.||+++|+.|...|++|+..+|++.
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~   41 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES   41 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            89999999984 89999999999999999999988753

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.51  E-value=0.037  Score=38.97  Aligned_cols=60  Identities=10%  Similarity=0.044  Sum_probs=38.9

Q ss_pred             CEEEEEecChHHHHHHHHHH-hCCCEEE-EEcCCCCCCC----Ccc--cccChhhhhc-CCcEEEEecc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQ-AFGFIIS-YNSRRKRPSV----LFP--YCANVYDLAV-NSDVLVVCCA  139 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~-~~G~~V~-~~~~~~~~~~----~~~--~~~~l~el~~-~aDiv~~~~p  139 (223)
                      .+|.|+|.|++|+.+++.+. .-|++++ ++|..+....    +..  ....++++.+ ..++.+.++|
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~~~i~iai~~i~   72 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVP   72 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSC
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHhhcccEEEEeCC
Confidence            37999999999999998764 4578865 4565554432    221  2344555543 4566677776

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=94.48  E-value=0.0062  Score=48.32  Aligned_cols=36  Identities=25%  Similarity=0.199  Sum_probs=32.3

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      |+||++.|-|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            78999999886 5699999999999999999998864

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=94.46  E-value=0.02  Score=46.64  Aligned_cols=63  Identities=10%  Similarity=0.115  Sum_probs=45.2

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------Cccc--------ccChhhhhcCCcEEEEeccC
Q 035615           78 GGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV--------LFPY--------CANVYDLAVNSDVLVVCCAL  140 (223)
Q Consensus        78 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------~~~~--------~~~l~el~~~aDiv~~~~p~  140 (223)
                      +.|||.|+| .|.||+.+++.|.+.|++|.+..|++....        ++..        ...++.++..+|.+++..+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~   81 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   81 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeeccc
Confidence            368999999 599999999999999999999888654321        1110        11244567778887776653

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=94.41  E-value=0.016  Score=47.22  Aligned_cols=61  Identities=13%  Similarity=0.102  Sum_probs=45.0

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------------CcccccChhhhhcCCcEEEE
Q 035615           78 GGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------------LFPYCANVYDLAVNSDVLVV  136 (223)
Q Consensus        78 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------------~~~~~~~l~el~~~aDiv~~  136 (223)
                      +||+|.|.| .|-||+.+++.|...|++|.+..|+.....                    +.....++++++..+|+|+.
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~   89 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH   89 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhh
Confidence            499999999 599999999999999999988766532110                    11123456678899998875


Q ss_pred             ec
Q 035615          137 CC  138 (223)
Q Consensus       137 ~~  138 (223)
                      +.
T Consensus        90 ~a   91 (342)
T d1y1pa1          90 IA   91 (342)
T ss_dssp             CC
T ss_pred             hc
Confidence            54

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=94.40  E-value=0.067  Score=42.22  Aligned_cols=99  Identities=15%  Similarity=0.130  Sum_probs=64.0

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcC
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL  156 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~m  156 (223)
                      ..|++|++||+-    ...++++..|+++.+++++++...  .....-++++++||+|+++-.  .=..+-+ ...|++.
T Consensus       120 ~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~gd--~p~~~~~~lLp~aD~viiTGs--TlvN~Tl-~~LL~~~  190 (251)
T d2h1qa1         120 VKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEEGD--YPLPASEFILPECDYVYITCA--SVVDKTL-PRLLELS  190 (251)
T ss_dssp             TTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCTTC--EEGGGHHHHGGGCSEEEEETH--HHHHTCH-HHHHHHT
T ss_pred             cCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCCCC--CCchHHHHhhhcCCEEEEEec--hhhcCCH-HHHHHhC
Confidence            469999999874    456667778899999999875432  222345789999999988641  1111222 4567777


Q ss_pred             CCCcEEEEcCCCc------------------ccCHHHHHHHHHcCC
Q 035615          157 GKGGMIINVGRGA------------------LIDEKEMLQFLVQGD  184 (223)
Q Consensus       157 k~ga~lIN~arg~------------------~vd~~al~~aL~~~~  184 (223)
                      |+...+|=+|-..                  +.|.+.+.+.+.+|.
T Consensus       191 ~~a~~vvl~GPS~p~~P~lf~~Gv~~lag~~v~d~~~~~~~i~~Gg  236 (251)
T d2h1qa1         191 RNARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVAGAE  236 (251)
T ss_dssp             TTSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHTTSS
T ss_pred             CcCCEEEEECCCcccCHHHHhcCCceEeEEEEeCHHHHHHHHHcCC
Confidence            7776666555322                  356666666666553

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=94.37  E-value=0.032  Score=45.73  Aligned_cols=33  Identities=24%  Similarity=0.161  Sum_probs=28.2

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      |.+.|.| .|-||+.+++.|...|++|++.+|..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5677888 79999999999999999999999853

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=94.33  E-value=0.037  Score=41.44  Aligned_cols=92  Identities=9%  Similarity=0.009  Sum_probs=64.6

Q ss_pred             ccCCCEEEEEecC--hHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------CcccccChhhhhcCCcEEEEe
Q 035615           76 KLGGMQVGIVRLG--NIGSEVLNRLQAFGFIISYNSRRKRPSV----------------LFPYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        76 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~~~~~~~l~el~~~aDiv~~~  137 (223)
                      .+.+.+|+++|=|  ++.++++..+..||+++.+..|..-...                ......++++.++.+|+|...
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~   81 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD   81 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence            4789999999954  7999999999999999998877532211                112357899999999999775


Q ss_pred             ccCC----h---h-------hhhccCHHHHhcCCCCcEEEEcCC
Q 035615          138 CALT----E---Q-------THHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       138 ~p~t----~---~-------t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      .=..    .   .       ....++.......+++++|..+.-
T Consensus        82 ~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~LP  125 (183)
T d1duvg2          82 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLP  125 (183)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSC
T ss_pred             ehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccCc
Confidence            4211    0   0       112334455566788999998763

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.26  E-value=0.021  Score=45.40  Aligned_cols=37  Identities=24%  Similarity=0.208  Sum_probs=32.7

Q ss_pred             cccCCCEEEEEecC---hHHHHHHHHHHhCCCEEEEEcCC
Q 035615           75 FKLGGMQVGIVRLG---NIGSEVLNRLQAFGFIISYNSRR  111 (223)
Q Consensus        75 ~~l~g~~vgIiG~G---~iG~~~a~~l~~~G~~V~~~~~~  111 (223)
                      .+|+||++.|-|.+   .||+++|+.|...|++|++.++.
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            56999999999986   59999999999999999877653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.24  E-value=0.04  Score=40.30  Aligned_cols=37  Identities=22%  Similarity=0.213  Sum_probs=31.6

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKRP  114 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~  114 (223)
                      .|.+|.|+|.|.+|...++.++.+|++ |++.++++++
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k   65 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDK   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHH
Confidence            488999999999999999999999974 6777776654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.17  E-value=0.034  Score=42.77  Aligned_cols=37  Identities=24%  Similarity=0.275  Sum_probs=33.9

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      -.+++|.|||.|..|-..|..|+..|++|.++++..+
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            5789999999999999999999999999999987654

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.17  E-value=0.12  Score=39.19  Aligned_cols=92  Identities=9%  Similarity=0.047  Sum_probs=63.7

Q ss_pred             HHHHHHHhCCCEEEEEcCCCCCCC---------CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEE
Q 035615           93 EVLNRLQAFGFIISYNSRRKRPSV---------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMII  163 (223)
Q Consensus        93 ~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lI  163 (223)
                      ..+++|...|++|++=.-......         ++....+.+++. ++|+|+..-|.+        .+.++.||+|.++|
T Consensus        21 ~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~--------~~e~~~lk~~~~li   91 (193)
T d1pjca2          21 SSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPL--------PAEYDLMQKDQLLF   91 (193)
T ss_dssp             HHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCC--------GGGGGGCCTTCEEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCC--------HHHHHhhhcCceEE
Confidence            467788889999987543332211         333345666766 589887555433        34578899999999


Q ss_pred             EcCCCcccCHHHHHHHHHcCCceEEEeeCCCC
Q 035615          164 NVGRGALIDEKEMLQFLVQGDINGVGLDVFEN  195 (223)
Q Consensus       164 N~arg~~vd~~al~~aL~~~~i~~a~lDV~~~  195 (223)
                      -.-..  .....+.++|.++++...++|....
T Consensus        92 ~~l~p--~~~~ell~~l~~~~it~~s~E~ipr  121 (193)
T d1pjca2          92 TYLHL--AAARELTEQLMRVGLTAIAYETVEL  121 (193)
T ss_dssp             ECCCG--GGCHHHHHHHHHHTCEEEEGGGCCC
T ss_pred             EecCc--ccchHHHHHHHHcCCEEEEeeeccc
Confidence            76553  4456899999999999888887644

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.02  E-value=0.03  Score=45.43  Aligned_cols=36  Identities=19%  Similarity=0.220  Sum_probs=32.4

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      +.|+|.|||.|.-|-.+|..|+..|.+|.+++.+..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            368999999999999999999999999999987654

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=93.99  E-value=0.11  Score=42.17  Aligned_cols=94  Identities=11%  Similarity=0.154  Sum_probs=65.5

Q ss_pred             ccCCCEEEEEec---ChHHHHHHHHHHhCC-CEEEEEcCCCCCCC------------CcccccChhhhhcCCcEEEEecc
Q 035615           76 KLGGMQVGIVRL---GNIGSEVLNRLQAFG-FIISYNSRRKRPSV------------LFPYCANVYDLAVNSDVLVVCCA  139 (223)
Q Consensus        76 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~------------~~~~~~~l~el~~~aDiv~~~~p  139 (223)
                      .+.|++|+++|-   +++..+.+..+..+| +++.+..|..-...            ......++++.++.+|+|....-
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~  230 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV  230 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEECCC
T ss_pred             CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeeccc
Confidence            488999999996   788899998888885 68887766432111            12335788999999999875421


Q ss_pred             CCh----h------hhhccCHHHHhcCCCCcEEEEcC-CCc
Q 035615          140 LTE----Q------THHIINKDVMAELGKGGMIINVG-RGA  169 (223)
Q Consensus       140 ~t~----~------t~~li~~~~l~~mk~ga~lIN~a-rg~  169 (223)
                      ..+    .      ....++.+.++.+|++++|.-+. ||.
T Consensus       231 ~~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHcLPRg~  271 (310)
T d1tuga1         231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVD  271 (310)
T ss_dssp             CGGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECCSCCSS
T ss_pred             chhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeCCCCCC
Confidence            111    0      12346788889999999988655 544

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=93.97  E-value=0.021  Score=43.94  Aligned_cols=34  Identities=26%  Similarity=0.235  Sum_probs=30.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      ++|.|||.|.-|-..|..|+..|++|.++++...
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~   34 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            4799999999999999999999999999987643

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.04  Score=44.22  Aligned_cols=58  Identities=16%  Similarity=0.055  Sum_probs=40.1

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------Cc-----ccccChhhhhcCCcEEEEe
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------LF-----PYCANVYDLAVNSDVLVVC  137 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~-----~~~~~l~el~~~aDiv~~~  137 (223)
                      |+|.|.| .|-||+.+++.|...|++|+++++......       ..     .....++.++.++|+|+-+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~Vihl   72 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHL   72 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEEC
Confidence            7899999 599999999999999999999876332211       00     0112344556789987543

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=93.90  E-value=0.021  Score=42.50  Aligned_cols=100  Identities=18%  Similarity=0.218  Sum_probs=54.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC--CcccccC----h-hhhhcCCcEEEEeccCChhhhhccCH--
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV--LFPYCAN----V-YDLAVNSDVLVVCCALTEQTHHIINK--  150 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--~~~~~~~----l-~el~~~aDiv~~~~p~t~~t~~li~~--  150 (223)
                      .+|||=|||+||+.+.|.+..-+.+|.+.+.......  ....+++    + .++-...|.+++    +...-.+.+.  
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i----~g~~I~~~~~~~   76 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYV----DGKAIRATAVKD   76 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEE----TTEEEEEECCSS
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEECCCcchhhhhheeecccccCccccccccccceeEe----cceeEEEEecCC
Confidence            4799999999999999988877888877764322110  0000111    1 112223444443    1111122222  


Q ss_pred             -HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615          151 -DVMAELGKGGMIINVGRGALIDEKEMLQFLVQG  183 (223)
Q Consensus       151 -~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~  183 (223)
                       +.+..-+-|.-+|==+.|.-.+.+.+..-|+.|
T Consensus        77 p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g  110 (168)
T d2g82a1          77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGG  110 (168)
T ss_dssp             GGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTT
T ss_pred             hHHCcccccCCceeEeccccccchHHhhhhhccc
Confidence             222222334555555678888888888888765

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.02  Score=45.10  Aligned_cols=37  Identities=14%  Similarity=0.102  Sum_probs=32.7

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      +.||++.|.|. +.||+++|+.|...|++|+..+|+.+
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~   38 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLE   38 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            36999999996 67999999999999999999988754

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.86  E-value=0.075  Score=37.91  Aligned_cols=31  Identities=19%  Similarity=0.364  Sum_probs=24.2

Q ss_pred             EEEEEe-cChHHHHHHHHHHh-CCCEEE-EEcCC
Q 035615           81 QVGIVR-LGNIGSEVLNRLQA-FGFIIS-YNSRR  111 (223)
Q Consensus        81 ~vgIiG-~G~iG~~~a~~l~~-~G~~V~-~~~~~  111 (223)
                      ||+|+| .|+||+.+++.+.. -++++. .+|+.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~   34 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG   34 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            699999 69999999998754 578865 56653

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.73  E-value=0.013  Score=46.18  Aligned_cols=34  Identities=21%  Similarity=0.258  Sum_probs=27.6

Q ss_pred             CEE-EEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           80 MQV-GIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        80 ~~v-gIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      ||| .|-|. +.||+++|+.|...|++|+..+|+.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~   36 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDA   36 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            455 45565 67999999999999999999998753

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=93.61  E-value=0.085  Score=39.26  Aligned_cols=84  Identities=11%  Similarity=0.120  Sum_probs=55.7

Q ss_pred             CCCEEEEE--ecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------Ccccc--------cC----hhhhh----cC
Q 035615           78 GGMQVGIV--RLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------LFPYC--------AN----VYDLA----VN  130 (223)
Q Consensus        78 ~g~~vgIi--G~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~--------~~----l~el~----~~  130 (223)
                      .|.++.|+  |.|.+|+...+.++.+|++|+...++....+         ++...        .+    ..++.    ..
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~  107 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  107 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence            37888888  6799999999999999999987765544321         21111        11    11111    24


Q ss_pred             CcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      .|+++-++. .+..     ...+..|+++..+|.++.
T Consensus       108 vdvv~D~vg-~~~~-----~~~~~~l~~~G~~v~~G~  138 (189)
T d1gu7a2         108 AKLALNCVG-GKSS-----TGIARKLNNNGLMLTYGG  138 (189)
T ss_dssp             EEEEEESSC-HHHH-----HHHHHTSCTTCEEEECCC
T ss_pred             ceEEEECCC-cchh-----hhhhhhhcCCcEEEEECC
Confidence            788887764 2221     456788999999999863

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=93.55  E-value=0.092  Score=42.28  Aligned_cols=33  Identities=24%  Similarity=0.166  Sum_probs=29.1

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      ++|.|.| .|-||+.+++.|...|++|+++|+..
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~   34 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLC   34 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5789998 59999999999999999999987643

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=93.46  E-value=0.046  Score=42.86  Aligned_cols=38  Identities=16%  Similarity=0.233  Sum_probs=34.3

Q ss_pred             cCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           77 LGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        77 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      |+||++.|-| -+.||+++|+.|...|++|++.+|+.+.
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~   41 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG   41 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            8899999999 5899999999999999999999887653

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.45  E-value=0.046  Score=42.32  Aligned_cols=62  Identities=16%  Similarity=0.190  Sum_probs=45.2

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC--Ccc-----cccC---hhhhhcCCcEEEEec
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV--LFP-----YCAN---VYDLAVNSDVLVVCC  138 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--~~~-----~~~~---l~el~~~aDiv~~~~  138 (223)
                      |+||++.|.|. +.||+++|+.|...|++|++.+|+.+..+  ...     ....   +.+-+.+-|+++.+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnA   74 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNA   74 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEEEcchHHHHHHHHHHhCCCcEEEecc
Confidence            78999999996 67999999999999999999998754321  100     0112   233456789988875

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.21  E-value=0.1  Score=36.52  Aligned_cols=40  Identities=23%  Similarity=0.240  Sum_probs=35.4

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      +...+||+|.|||-|..+-.-|..|..+.-+|+++.|..+
T Consensus        22 ~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          22 GFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             GGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             hHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            4456899999999999999999999999999998887664

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.013  Score=46.53  Aligned_cols=37  Identities=22%  Similarity=0.310  Sum_probs=31.5

Q ss_pred             CCCEEEEE--ecChHHHHHHHHHHh-CCCEEEEEcCCCCC
Q 035615           78 GGMQVGIV--RLGNIGSEVLNRLQA-FGFIISYNSRRKRP  114 (223)
Q Consensus        78 ~g~~vgIi--G~G~iG~~~a~~l~~-~G~~V~~~~~~~~~  114 (223)
                      +||+|+||  |-+.||+++|+.|.. .|.+|+..+|+.+.
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~   40 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTR   40 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            58999988  678999999999875 59999999987654

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.15  E-value=0.036  Score=43.96  Aligned_cols=38  Identities=16%  Similarity=0.158  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .|+||++.|.|. +.||+++|+.|...|++|+..+|+.+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~   40 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSE   40 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999995 77999999999999999999988754

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.15  E-value=0.062  Score=41.53  Aligned_cols=91  Identities=14%  Similarity=0.180  Sum_probs=57.9

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcc--------c-------ccChhhhhc--CCcEEEEecc
Q 035615           78 GGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFP--------Y-------CANVYDLAV--NSDVLVVCCA  139 (223)
Q Consensus        78 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~--------~-------~~~l~el~~--~aDiv~~~~p  139 (223)
                      +||+|.|.|. |.||+++|+.|...|++|+..++.........        .       .....+.+.  .-|+++.+..
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~lInnAG   80 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAG   80 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccccccceeecccCcHHHHHHHHHHHHHHhCCCCceEEEECCc
Confidence            4899999996 77999999999999999998877654432110        0       011122233  3588887652


Q ss_pred             C-------Chhh----hhcc----------CHHHHhcCCCCcEEEEcCCC
Q 035615          140 L-------TEQT----HHII----------NKDVMAELGKGGMIINVGRG  168 (223)
Q Consensus       140 ~-------t~~t----~~li----------~~~~l~~mk~ga~lIN~arg  168 (223)
                      .       .+..    +.++          .+..+..|+++..+||++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~  130 (236)
T d1dhra_          81 GWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAK  130 (236)
T ss_dssp             CCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             ccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccH
Confidence            1       1111    1111          13457778999999999864

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=93.14  E-value=0.027  Score=41.97  Aligned_cols=31  Identities=26%  Similarity=0.364  Sum_probs=26.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSR  110 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~  110 (223)
                      .+|||=|||+||+.+.+.+...+.+|...+.
T Consensus         1 ~kIgINGfGRIGR~~~R~~~~~~~~ivaINd   31 (169)
T d1dssg1           1 SKIGINGFGRIGRLVLRAALEMGAQVVAVND   31 (169)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEECC
Confidence            3699999999999999999877888776653

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.13  E-value=0.064  Score=40.21  Aligned_cols=63  Identities=16%  Similarity=0.140  Sum_probs=41.9

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHhCCC--EEEEEcCCCCCCCC-cc-cccCh----hhhhcCCcEEEEeccCC
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQAFGF--IISYNSRRKRPSVL-FP-YCANV----YDLAVNSDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~-~~-~~~~l----~el~~~aDiv~~~~p~t  141 (223)
                      -|+|.|.|. |-||+.+++.|...|.  +|+...|++..... .. ...++    +.+....|.|+.|+..+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhcccccccccchhhhhhccccchheeeeeeeee
Confidence            379999996 9999999999998887  66666665433221 11 11222    23445679998886443

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.068  Score=41.33  Aligned_cols=34  Identities=26%  Similarity=0.327  Sum_probs=31.0

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      .++|.|||.|.-|-..|..|+..|++|.++..+.
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            5679999999999999999999999999997654

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.82  E-value=0.024  Score=41.37  Aligned_cols=60  Identities=15%  Similarity=0.037  Sum_probs=41.0

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhC---CC----EEEEEcCCCCCCC-----------------CcccccChhhhhcCCcEE
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAF---GF----IISYNSRRKRPSV-----------------LFPYCANVYDLAVNSDVL  134 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~---G~----~V~~~~~~~~~~~-----------------~~~~~~~l~el~~~aDiv  134 (223)
                      .+|.||| .|.+|+.+|-.|...   |.    .+..+|.......                 ......+.++.++.+|+|
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV   83 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence            4899999 599999999988643   32    3556665443210                 011235677899999999


Q ss_pred             EEecc
Q 035615          135 VVCCA  139 (223)
Q Consensus       135 ~~~~p  139 (223)
                      +++..
T Consensus        84 Vitag   88 (154)
T d5mdha1          84 ILVGS   88 (154)
T ss_dssp             EECCS
T ss_pred             EEecc
Confidence            99863

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=92.81  E-value=0.034  Score=41.10  Aligned_cols=85  Identities=12%  Similarity=0.092  Sum_probs=56.9

Q ss_pred             cCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhh----h-----hcCCcEEEEeccCC
Q 035615           77 LGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYD----L-----AVNSDVLVVCCALT  141 (223)
Q Consensus        77 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e----l-----~~~aDiv~~~~p~t  141 (223)
                      ..|.+|.|-| .|.+|....+.++.+|++|+...++.++.+     ++....+-++    .     -+..|+|+-++- .
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg-g  100 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG-G  100 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC-T
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCc-H
Confidence            3577899999 599999999999999999999888766532     2211111111    1     134677766653 1


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                       +   .+ .+.++.++++..++.++.
T Consensus       101 -~---~~-~~~~~~l~~~G~iv~~G~  121 (167)
T d1tt7a2         101 -K---QL-ASLLSKIQYGGSVAVSGL  121 (167)
T ss_dssp             -H---HH-HHHHTTEEEEEEEEECCC
T ss_pred             -H---HH-HHHHHHhccCceEEEeec
Confidence             1   12 457788899999888874

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=92.72  E-value=0.046  Score=40.78  Aligned_cols=31  Identities=19%  Similarity=0.266  Sum_probs=24.1

Q ss_pred             CEEEEEecChHHHHHHHHHHhC---CCEEEEEcC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF---GFIISYNSR  110 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~---G~~V~~~~~  110 (223)
                      .+|||=|||+||+.+.|.+...   .++|+..+.
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd   34 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVIND   34 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcC
Confidence            4799999999999999987643   256666553

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.53  E-value=0.08  Score=39.87  Aligned_cols=37  Identities=14%  Similarity=0.194  Sum_probs=32.2

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRP  114 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  114 (223)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++.+
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~r   62 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPAR   62 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchh
Confidence            48899999999999999999999988 68888877643

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=92.45  E-value=0.075  Score=36.37  Aligned_cols=38  Identities=18%  Similarity=-0.015  Sum_probs=30.9

Q ss_pred             CCEEEEEecChHHHHHHHHHHh---CCCEEEEEcCCCCCCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQA---FGFIISYNSRRKRPSV  116 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~---~G~~V~~~~~~~~~~~  116 (223)
                      .+++.|||-|.+|-.+|..+.+   .|.+|..+.+.+....
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~   58 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR   58 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccccccc
Confidence            4789999999999999987655   4889998887765443

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.43  E-value=0.076  Score=38.51  Aligned_cols=30  Identities=33%  Similarity=0.248  Sum_probs=26.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEE
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISY  107 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~  107 (223)
                      ++++|.|||-|.+|-.+|..|+.+|.+|.+
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v   31 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNI   31 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEE
Confidence            478999999999999999999999987543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=92.36  E-value=0.25  Score=35.78  Aligned_cols=37  Identities=16%  Similarity=0.166  Sum_probs=32.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRP  114 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  114 (223)
                      .|.+|.|+|.|.+|...+..++..|. +|++.++++++
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r   65 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK   65 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHH
Confidence            48999999999999999999998887 58888887754

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.30  E-value=0.11  Score=37.20  Aligned_cols=38  Identities=16%  Similarity=0.095  Sum_probs=32.6

Q ss_pred             cCCCEEEEE--ecChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           77 LGGMQVGIV--RLGNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        77 l~g~~vgIi--G~G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      ..++.+.|+  |-|.||-.+|..|..+|++|.++.+.+..
T Consensus        37 ~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          37 KIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             CCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             ccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            457788887  88999999999999999999999876543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.26  E-value=0.045  Score=40.84  Aligned_cols=110  Identities=14%  Similarity=0.115  Sum_probs=67.5

Q ss_pred             cCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc---cc-Chhhhh-----cCCcEEEEeccCC
Q 035615           77 LGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY---CA-NVYDLA-----VNSDVLVVCCALT  141 (223)
Q Consensus        77 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~---~~-~l~el~-----~~aDiv~~~~p~t  141 (223)
                      -.|.+|.|.| .|.+|....+.++..|++|+...+++++.+     ++..   +. ..++..     +..|+|+-++...
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg~  109 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGR  109 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTTT
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCCch
Confidence            4589999999 599999999999999999998887766532     2111   11 112221     2467777766411


Q ss_pred             hhhhhccCHHHHhcCCCCcEEEEcCC-CcccCHHHHHHHHHcCCceEEEeeCC
Q 035615          142 EQTHHIINKDVMAELGKGGMIINVGR-GALIDEKEMLQFLVQGDINGVGLDVF  193 (223)
Q Consensus       142 ~~t~~li~~~~l~~mk~ga~lIN~ar-g~~vd~~al~~aL~~~~i~~a~lDV~  193 (223)
                            .-...++.|+++..++.++- ++....-.+...+. +++.-.++|.+
T Consensus       110 ------~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~-k~~~i~Gv~~~  155 (176)
T d1xa0a2         110 ------TLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFIL-RGVSLLGIDSV  155 (176)
T ss_dssp             ------THHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHH-TTCEEEECCSS
T ss_pred             ------hHHHHHHHhCCCceEEEeecccCcccCCCHHHHHH-CCcEEEEEeCC
Confidence                  22567888999999998874 33322223333332 23444466654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=92.24  E-value=0.042  Score=43.15  Aligned_cols=83  Identities=13%  Similarity=0.170  Sum_probs=48.5

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCC--hhhhhccCHHHHhc
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALT--EQTHHIINKDVMAE  155 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t--~~t~~li~~~~l~~  155 (223)
                      ||.+.|-|. +.||+++|+.|...|++|+..+|+.+..+..  ..++.+.  ..++..+.+-.+  ++.+.+++ +..+.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~--~~~l~~~--g~~~~~~~~Dvs~~~~v~~~~~-~~~~~   76 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTT--LKELREA--GVEADGRTCDVRSVPEIEALVA-AVVER   76 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH--HHHHHHT--TCCEEEEECCTTCHHHHHHHHH-HHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH--HHHHHhc--CCcEEEEEeecCCHHHHHHHHH-HHHHH
Confidence            676677775 6799999999999999999999865322111  1112211  234555544433  33445553 34444


Q ss_pred             CCCCcEEEEcC
Q 035615          156 LGKGGMIINVG  166 (223)
Q Consensus       156 mk~ga~lIN~a  166 (223)
                      ..+=-++||.+
T Consensus        77 ~g~iDilVnnA   87 (257)
T d2rhca1          77 YGPVDVLVNNA   87 (257)
T ss_dssp             TCSCSEEEECC
T ss_pred             hCCCCEEEecc
Confidence            44434677654

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.23  E-value=0.056  Score=42.90  Aligned_cols=37  Identities=19%  Similarity=0.217  Sum_probs=33.4

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      |+||++.|-|. +.||+++|+.|...|++|++.+|+.+
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   39 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNED   39 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            78999999996 67999999999999999999988754

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.21  E-value=0.072  Score=39.33  Aligned_cols=32  Identities=13%  Similarity=0.023  Sum_probs=29.7

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      |.|||.|..|...|..|...|.+|+++++...
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~~   39 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQDH   39 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            79999999999999999999999999988753

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.18  E-value=0.063  Score=42.08  Aligned_cols=37  Identities=19%  Similarity=0.112  Sum_probs=31.4

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEE-cCC
Q 035615           75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYN-SRR  111 (223)
Q Consensus        75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~-~~~  111 (223)
                      +.|.||++.|.|. +.||+++|+.|...|++|++. +++
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~   40 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSS   40 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            3589999999995 669999999999999999864 443

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.14  E-value=0.06  Score=39.95  Aligned_cols=33  Identities=21%  Similarity=0.203  Sum_probs=29.4

Q ss_pred             EEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCC
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKR  113 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~  113 (223)
                      +|.|||.|..|-..|..|+..|+ +|.++++...
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~   35 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDH   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence            48999999999999999999997 5999987653

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=91.96  E-value=0.038  Score=41.23  Aligned_cols=85  Identities=15%  Similarity=0.166  Sum_probs=56.2

Q ss_pred             cCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc---ccC--hh-hhh-cCCcEEEEeccCChh
Q 035615           77 LGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY---CAN--VY-DLA-VNSDVLVVCCALTEQ  143 (223)
Q Consensus        77 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~---~~~--l~-el~-~~aDiv~~~~p~t~~  143 (223)
                      ..+.+|.|.| .|.+|+...+.++.+|++|++..+++++.+     ++..   +.+  .. ++. ...|.++-++.  ..
T Consensus        30 ~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vg--g~  107 (177)
T d1o89a2          30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVG--DK  107 (177)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSC--HH
T ss_pred             CCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEcc--hH
Confidence            3455787777 599999999999999999999888776532     2211   111  11 111 22477665553  11


Q ss_pred             hhhccCHHHHhcCCCCcEEEEcCC
Q 035615          144 THHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       144 t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                      +    -.+.++.|+++..+|+++.
T Consensus       108 ~----~~~~l~~l~~~Griv~~G~  127 (177)
T d1o89a2         108 V----LAKVLAQMNYGGCVAACGL  127 (177)
T ss_dssp             H----HHHHHHTEEEEEEEEECCC
T ss_pred             H----HHHHHHHhccccceEeecc
Confidence            1    2567888999999999875

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.90  E-value=0.078  Score=39.35  Aligned_cols=30  Identities=20%  Similarity=0.195  Sum_probs=24.5

Q ss_pred             EEEEEecChHHHHHHHHHHh---CCCEEEEEcC
Q 035615           81 QVGIVRLGNIGSEVLNRLQA---FGFIISYNSR  110 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~---~G~~V~~~~~  110 (223)
                      +|||=|||+||+.+.+.+..   .+.+|...+.
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd   34 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEecc
Confidence            79999999999999998763   3578777654

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.82  E-value=0.1  Score=39.56  Aligned_cols=33  Identities=15%  Similarity=0.091  Sum_probs=28.9

Q ss_pred             EEEEEecChHHHHHHHHHHh--CCCEEEEEcCCCC
Q 035615           81 QVGIVRLGNIGSEVLNRLQA--FGFIISYNSRRKR  113 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~--~G~~V~~~~~~~~  113 (223)
                      +|+|||.|.-|-..|..|+.  +|++|.+|++.+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            79999999999999998854  6889999987764

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=91.80  E-value=0.063  Score=41.77  Aligned_cols=58  Identities=21%  Similarity=0.250  Sum_probs=37.3

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCC-CCcccccChhhhhc--CCcEEEEec
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPS-VLFPYCANVYDLAV--NSDVLVVCC  138 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~~~~~~~~l~el~~--~aDiv~~~~  138 (223)
                      |+|.|.| .|-||+.+++.|...|..|. .++..... ........++++++  +.|+|+-+.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v~-~~~~~~~~~~Dl~~~~~~~~~i~~~~~D~Vih~A   62 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLIA-LDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAA   62 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEEE-ECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEE-EECCCccccCcCCCHHHHHHHHHHcCCCEEEEec
Confidence            5799999 49999999999998886544 44433322 22222334556665  358876544

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.79  E-value=0.069  Score=42.00  Aligned_cols=38  Identities=13%  Similarity=0.118  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .|+||++.|.|. +.||+++|+.|...|++|+..+|+.+
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAE   40 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            488999999995 89999999999999999999988753

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=91.74  E-value=0.085  Score=39.26  Aligned_cols=98  Identities=13%  Similarity=0.195  Sum_probs=60.2

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHh---CCC----EEEEEcCCCCCC--C---------------CcccccChhhhhcCCcE
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQA---FGF----IISYNSRRKRPS--V---------------LFPYCANVYDLAVNSDV  133 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~---~G~----~V~~~~~~~~~~--~---------------~~~~~~~l~el~~~aDi  133 (223)
                      -.+|.|+|. |.||+.++-.|..   ||.    .+..+|......  .               ......+..+.++.+|+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv  103 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW  103 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence            458999996 9999999998875   453    345566544221  0               11224677889999999


Q ss_pred             EEEeccCC--h-hhh--------hccC--HHHHhc-CCCCcEEEEcCCCcccCHHHHHH
Q 035615          134 LVVCCALT--E-QTH--------HIIN--KDVMAE-LGKGGMIINVGRGALIDEKEMLQ  178 (223)
Q Consensus       134 v~~~~p~t--~-~t~--------~li~--~~~l~~-mk~ga~lIN~arg~~vd~~al~~  178 (223)
                      |++.....  + +++        .++.  .+.+.. .+++++++=++.  .+|.-+++.
T Consensus       104 Vvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~t~ia  160 (175)
T d7mdha1         104 ALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNALIC  160 (175)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHHH
T ss_pred             EEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHHHHHH
Confidence            99986321  1 111        1111  123333 366787777754  588777653

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=91.74  E-value=0.26  Score=37.84  Aligned_cols=63  Identities=16%  Similarity=0.231  Sum_probs=41.7

Q ss_pred             ccCCCEEEEEe-----------------cChHHHHHHHHHHhCCCEEEEEcCCCC-CCC-Cc--ccc-------cChhhh
Q 035615           76 KLGGMQVGIVR-----------------LGNIGSEVLNRLQAFGFIISYNSRRKR-PSV-LF--PYC-------ANVYDL  127 (223)
Q Consensus        76 ~l~g~~vgIiG-----------------~G~iG~~~a~~l~~~G~~V~~~~~~~~-~~~-~~--~~~-------~~l~el  127 (223)
                      +|+|++|.|-+                 -|.||.++|+.+..+|++|.++.-... ... ..  ..+       ..+.+.
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~~~~~~~~~t~~~m~~~~~~~   82 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNAS   82 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCcccccccceehhhHHHHHHHHhh
Confidence            46677766654                 699999999999999999987653322 211 11  111       123345


Q ss_pred             hcCCcEEEEec
Q 035615          128 AVNSDVLVVCC  138 (223)
Q Consensus       128 ~~~aDiv~~~~  138 (223)
                      ++++|+++.+.
T Consensus        83 ~~~~D~~i~aA   93 (223)
T d1u7za_          83 VQQQNIFIGCA   93 (223)
T ss_dssp             GGGCSEEEECC
T ss_pred             hccceeEeeee
Confidence            68899888775

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=91.70  E-value=0.1  Score=42.05  Aligned_cols=34  Identities=21%  Similarity=0.169  Sum_probs=29.0

Q ss_pred             CEEEEEecChHHHHHHHHHHhCC--CEEEEEcCCCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFG--FIISYNSRRKR  113 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~  113 (223)
                      |+|+|||.|.-|-.+|..|+..|  .+|.++.+...
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            68999999999999999887544  69999987754

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.60  E-value=0.12  Score=39.42  Aligned_cols=35  Identities=14%  Similarity=0.104  Sum_probs=31.1

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRP  114 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  114 (223)
                      .+|.|||.|.-|-.+|..|+..|. +|.++++.+..
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   37 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            479999999999999999999996 89999887654

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=91.23  E-value=0.097  Score=40.44  Aligned_cols=31  Identities=16%  Similarity=0.037  Sum_probs=29.2

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      |.|||.|-+|..+|..|...|.+|+++++..
T Consensus         7 vvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8999999999999999999999999999754

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=91.20  E-value=0.029  Score=40.81  Aligned_cols=96  Identities=16%  Similarity=0.159  Sum_probs=54.8

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHhCCC----E-E--EEEcCCCCCC--C---------------CcccccChhhhhcCCcE
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQAFGF----I-I--SYNSRRKRPS--V---------------LFPYCANVYDLAVNSDV  133 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~~G~----~-V--~~~~~~~~~~--~---------------~~~~~~~l~el~~~aDi  133 (223)
                      -.+|.|+|. |.+|+.++-.|...+.    . +  ..++......  .               ......+..+.++.||+
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv   83 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY   83 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccE
Confidence            358999996 9999999999875432    1 2  2232221110  0               01123567788999999


Q ss_pred             EEEeccC--Chh-hh-hcc--CH-------HHHhc-CCCCcEEEEcCCCcccCHHHH
Q 035615          134 LVVCCAL--TEQ-TH-HII--NK-------DVMAE-LGKGGMIINVGRGALIDEKEM  176 (223)
Q Consensus       134 v~~~~p~--t~~-t~-~li--~~-------~~l~~-mk~ga~lIN~arg~~vd~~al  176 (223)
                      |+++.-.  .|. ++ .++  |.       +.+.+ .+++++++.++.  .+|.-..
T Consensus        84 ViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t~  138 (154)
T d1y7ta1          84 ALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNAL  138 (154)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHH
T ss_pred             EEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHHH
Confidence            9998732  221 21 122  11       12223 456888888764  5665443

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.06  E-value=0.084  Score=41.27  Aligned_cols=32  Identities=25%  Similarity=0.193  Sum_probs=30.1

Q ss_pred             EEEEEecChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      +|.|||.|..|-.+|..|+..|.+|.++++.+
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            59999999999999999999999999999875

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.06  E-value=0.2  Score=38.35  Aligned_cols=62  Identities=16%  Similarity=0.097  Sum_probs=44.7

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHh--------------------CCC-EEEEEcCCCCCCCCcccccChhhhhcCCcE
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQA--------------------FGF-IISYNSRRKRPSVLFPYCANVYDLAVNSDV  133 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~--------------------~G~-~V~~~~~~~~~~~~~~~~~~l~el~~~aDi  133 (223)
                      ..+.|++|.|||-|+.+--+|+.|..                    .|. +|..+.|.......+. ...+.|+....++
T Consensus        35 ~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~~~ft-~~Elre~~~~~~~  113 (225)
T d1cjca1          35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFT-IKELREMIQLPGT  113 (225)
T ss_dssp             CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCC-HHHHHHHHTCTTE
T ss_pred             ccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHhCCCC-chhhhcccccCCC
Confidence            46789999999999999999998876                    476 4877776654332222 2346677777777


Q ss_pred             EEEe
Q 035615          134 LVVC  137 (223)
Q Consensus       134 v~~~  137 (223)
                      .+..
T Consensus       114 ~~~~  117 (225)
T d1cjca1         114 RPML  117 (225)
T ss_dssp             EEEC
T ss_pred             ccee
Confidence            6654

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=91.02  E-value=0.15  Score=40.76  Aligned_cols=33  Identities=24%  Similarity=0.203  Sum_probs=27.9

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCC-CEEEEEcCCC
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFG-FIISYNSRRK  112 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G-~~V~~~~~~~  112 (223)
                      ++|.|.| .|-||+.+++.|...| .+|++.|+..
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~   35 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS   35 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            5789998 5999999999998888 5899887654

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.96  E-value=0.11  Score=39.05  Aligned_cols=38  Identities=18%  Similarity=0.292  Sum_probs=32.3

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      .+++||+|.|||.|.-|-.+|..+...+.++...-+++
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            46899999999999999999999988888876655444

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=90.95  E-value=0.12  Score=38.20  Aligned_cols=32  Identities=28%  Similarity=0.306  Sum_probs=25.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhC-CCEEEEEcCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF-GFIISYNSRR  111 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~  111 (223)
                      .+|||=|||+||+.+.|.+... .++|...+..
T Consensus         2 ikigINGFGRIGR~v~R~~~~~~~i~ivaINd~   34 (166)
T d1gado1           2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   34 (166)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             eEEEEECCcHHHHHHHHHHhhCCCeEEEEEeCC
Confidence            4799999999999999988755 5677776643

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.79  E-value=0.14  Score=40.42  Aligned_cols=34  Identities=15%  Similarity=0.126  Sum_probs=30.2

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      |+|.|.| .|-||+.+++.|...|++|++++|...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            6889998 599999999999999999999987653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=90.77  E-value=0.082  Score=38.97  Aligned_cols=35  Identities=9%  Similarity=-0.074  Sum_probs=30.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      +++.|.|||-|..|-..|..+..+|++|+++++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            46789999999999999999999999999887543

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.76  E-value=0.13  Score=39.36  Aligned_cols=36  Identities=17%  Similarity=0.204  Sum_probs=31.2

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      +.+|.|.|. |.||+++|+.|...|++|+..+|....
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~   38 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   38 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence            456888884 899999999999999999999987654

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.64  E-value=0.29  Score=37.06  Aligned_cols=64  Identities=23%  Similarity=0.228  Sum_probs=43.9

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHH--------------------hCCCE-EEEEcCCCCCCCCcccccChhhhhcCCcE
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQ--------------------AFGFI-ISYNSRRKRPSVLFPYCANVYDLAVNSDV  133 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~--------------------~~G~~-V~~~~~~~~~~~~~~~~~~l~el~~~aDi  133 (223)
                      ..+.|++|.|||-|+.+--+|+.+.                    ..|.+ |..+.|.......+. ...+.|+.+..++
T Consensus        35 ~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~~~~ft-~~Elre~~~l~~~  113 (216)
T d1lqta1          35 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFT-TLELRELADLDGV  113 (216)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCC-HHHHHHGGGCTTE
T ss_pred             ccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChHhCCCC-hhhhhhhcccCCC
Confidence            4578999999999999999999875                    56774 776665543322221 2346677776766


Q ss_pred             EEEecc
Q 035615          134 LVVCCA  139 (223)
Q Consensus       134 v~~~~p  139 (223)
                      -...-|
T Consensus       114 ~~~~~~  119 (216)
T d1lqta1         114 DVVIDP  119 (216)
T ss_dssp             EEECCG
T ss_pred             CccCCH
Confidence            655443

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=90.54  E-value=0.096  Score=38.96  Aligned_cols=31  Identities=23%  Similarity=0.237  Sum_probs=24.2

Q ss_pred             CEEEEEecChHHHHHHHHHHhC----CCEEEEEcC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF----GFIISYNSR  110 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~----G~~V~~~~~  110 (223)
                      .+|||=|||+||+.+.|.+...    .++|...+.
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd   36 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND   36 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEEC
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcC
Confidence            4799999999999999987542    456766654

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=90.54  E-value=0.092  Score=33.71  Aligned_cols=37  Identities=19%  Similarity=0.339  Sum_probs=32.3

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           78 GGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        78 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      .+.+|.|.|. |.+|....+.++.+|++|++..+++++
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k   68 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            5888999885 999999999999999999998876643

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.50  E-value=0.16  Score=38.64  Aligned_cols=37  Identities=14%  Similarity=0.120  Sum_probs=31.5

Q ss_pred             CCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCC
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPS  115 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~  115 (223)
                      +|++.|-|. +.||+++|+.|...|++|+..+|+.+..
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~   38 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGE   38 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcccc
Confidence            477788885 8999999999999999999998876543

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.50  E-value=0.035  Score=41.52  Aligned_cols=83  Identities=16%  Similarity=0.133  Sum_probs=54.4

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHhCCCE-EEEEcCCCCCC------CCcc-----cccChhhhhcC-----CcEEEEeccC
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQAFGFI-ISYNSRRKRPS------VLFP-----YCANVYDLAVN-----SDVLVVCCAL  140 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~------~~~~-----~~~~l~el~~~-----aDiv~~~~p~  140 (223)
                      +++|.|.| .|.+|+..++.++.+|++ |++.+.+.+..      .++.     ...++.+.+++     .|+|+-++. 
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG-  109 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG-  109 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC-
Confidence            57899999 599999999999999996 55555443221      1211     12334443333     898888774 


Q ss_pred             ChhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615          141 TEQTHHIINKDVMAELGKGGMIINVGR  167 (223)
Q Consensus       141 t~~t~~li~~~~l~~mk~ga~lIN~ar  167 (223)
                       .++   + ...++.++++..++.++.
T Consensus       110 -g~~---~-~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         110 -GDI---S-NTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             -HHH---H-HHHHTTEEEEEEEEEC--
T ss_pred             -chh---H-HHHhhhccccccEEEecc
Confidence             111   2 467788999999998874

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=90.08  E-value=0.13  Score=38.03  Aligned_cols=31  Identities=23%  Similarity=0.172  Sum_probs=24.6

Q ss_pred             CEEEEEecChHHHHHHHHHHh-CCCEEEEEcC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQA-FGFIISYNSR  110 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~~~~~  110 (223)
                      -+|||=|||+||+.+.+.+.. -..++.+.+.
T Consensus         2 ikIgINGFGRIGR~v~R~~~~~~~~~ivaINd   33 (169)
T d1u8fo1           2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIND   33 (169)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             cEEEEECCcHHHHHHHHHHHHCCCcEEEEecC
Confidence            379999999999999997764 3578776643

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=90.03  E-value=0.13  Score=38.37  Aligned_cols=30  Identities=17%  Similarity=0.155  Sum_probs=28.0

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEEcCC
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRR  111 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  111 (223)
                      |.|||.|..|...|..++.+|.+|.++++.
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999998764

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=90.02  E-value=0.2  Score=39.56  Aligned_cols=31  Identities=16%  Similarity=0.105  Sum_probs=26.9

Q ss_pred             EEEEEe-cChHHHHHHHHHHhCCCEEEEEcCC
Q 035615           81 QVGIVR-LGNIGSEVLNRLQAFGFIISYNSRR  111 (223)
Q Consensus        81 ~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~  111 (223)
                      +|.|.| .|-||+.+++.|...|++|+++|+.
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~   33 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNL   33 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            677887 6999999999999999999998753

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.92  E-value=0.21  Score=35.05  Aligned_cols=37  Identities=24%  Similarity=0.190  Sum_probs=30.9

Q ss_pred             CCEEEEEecChHHHHHHHHH----HhCCCEEEEEcCCCCCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRL----QAFGFIISYNSRRKRPS  115 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l----~~~G~~V~~~~~~~~~~  115 (223)
                      ++++.|||-|.+|-.+|..|    +..|.+|..+.+.+...
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l   77 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM   77 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC
Confidence            68999999999999998776    46799999888766543

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.85  E-value=0.29  Score=39.28  Aligned_cols=124  Identities=10%  Similarity=0.128  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhC----CC-------EEE
Q 035615           38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAF----GF-------IIS  106 (223)
Q Consensus        38 vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~----G~-------~V~  106 (223)
                      +|=-+++-+++.+|-                    .++.|+..+|.|.|.|.-|-.+|+.+...    |.       +++
T Consensus         4 Ta~V~lAglinAlki--------------------~gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~   63 (294)
T d1pj3a1           4 TAAVALAGLLAAQKV--------------------ISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIW   63 (294)
T ss_dssp             HHHHHHHHHHHHHHH--------------------HCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEE
T ss_pred             HHHHHHHHHHHHHHH--------------------hCCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEE
Confidence            344567777776663                    24568899999999999999999987644    33       377


Q ss_pred             EEcCCC----CCC---CCcc----------cccChhhhhc--CCcEEEEeccCChhhhhccCHHHHh---cCCCCcEEEE
Q 035615          107 YNSRRK----RPS---VLFP----------YCANVYDLAV--NSDVLVVCCALTEQTHHIINKDVMA---ELGKGGMIIN  164 (223)
Q Consensus       107 ~~~~~~----~~~---~~~~----------~~~~l~el~~--~aDiv~~~~p~t~~t~~li~~~~l~---~mk~ga~lIN  164 (223)
                      .+|+..    ...   ...+          ...+|.|+++  +.|+++-+.    ..-++++++.++   .|.+..++.=
T Consensus        64 lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~~~kptvliG~S----~~~g~ft~evi~~Ma~~~~~PIIFa  139 (294)
T d1pj3a1          64 MFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVA----GAGRLFTPDVIRAMASINERPVIFA  139 (294)
T ss_dssp             EEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHHHCCSEEEECC----CSSCCSCHHHHHHHHHHCSSCEEEE
T ss_pred             EEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHHhcCCceEEEec----CCCCcCCHHHHHHHHhcCCCcEEEE
Confidence            777532    110   1000          1246777765  677665543    123567777665   4557888888


Q ss_pred             cCCCccc---CHHHHHHHHHcCCce
Q 035615          165 VGRGALI---DEKEMLQFLVQGDIN  186 (223)
Q Consensus       165 ~arg~~v---d~~al~~aL~~~~i~  186 (223)
                      .|.-..-   ..+..++. .+|+..
T Consensus       140 LSNPt~~~e~~~~~a~~~-t~grai  163 (294)
T d1pj3a1         140 LSNPTAQAECTAEEAYTL-TEGRCL  163 (294)
T ss_dssp             CCSSGGGCSCCHHHHHHH-TTTCCE
T ss_pred             ccCCCCcCCcCHHHHHhh-ccCceE
Confidence            8876432   34444443 344444

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.63  E-value=0.17  Score=37.40  Aligned_cols=33  Identities=18%  Similarity=0.240  Sum_probs=28.0

Q ss_pred             CEEEEEecChHHHHHHHHHHhC--CCEEEEEcCCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF--GFIISYNSRRK  112 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~  112 (223)
                      +||.|||.|.+|-.+|..|+.+  +.+|..+++..
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            5899999999999999999876  45788887654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.62  E-value=0.16  Score=40.62  Aligned_cols=35  Identities=23%  Similarity=0.207  Sum_probs=31.2

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      ....|.|||.|..|-.+|..|+..|.+|.++++.+
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            35569999999999999999999999999998754

>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Transcarbamylase-like protein
species: Bacteroides fragilis [TaxId: 817]

Probab=89.22  E-value=1.4  Score=31.81  Aligned_cols=85  Identities=4%  Similarity=-0.003  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCC---hh--------hhhccCHHHH
Q 035615           90 IGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALT---EQ--------THHIINKDVM  153 (223)
Q Consensus        90 iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t---~~--------t~~li~~~~l  153 (223)
                      +.++.+..+..+|+++.+..|..-...     ......++++.++.+|+|..-.-..   +.        ....+++.. 
T Consensus        21 Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~~~~~~~d~~eav~~aDvI~td~w~s~~~~~~~~~~~~~~~~~~~~~l-   99 (161)
T d1js1x2          21 VPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQ-   99 (161)
T ss_dssp             HHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECCCCCCSTTCTTCCCCCCTTSSBCHHH-
T ss_pred             HHHHHHHHHHHcCCEEEEECCcccCCCHHHhCCceEecCHHHHhCCCcceeeehhhhhcchhHHHHHHHhhhhhhhHHH-
Confidence            788999999999999998887643221     3344678999999999998643111   00        112234444 


Q ss_pred             hcCCCCcEEEEcC---CCcccCHHH
Q 035615          154 AELGKGGMIINVG---RGALIDEKE  175 (223)
Q Consensus       154 ~~mk~ga~lIN~a---rg~~vd~~a  175 (223)
                      ..++++++|.-++   ||.=|+.+-
T Consensus       100 ~~~~~dai~MHclPa~Rg~EIs~eV  124 (161)
T d1js1x2         100 MAVTNNAYFMHCLPVRRNMIVTDDV  124 (161)
T ss_dssp             HTTSSSCEEECCSCCCBTTTBCHHH
T ss_pred             hhcCCceEEcCCCccccchhcchhh
Confidence            4467788988887   566555543

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.21  E-value=0.17  Score=41.42  Aligned_cols=31  Identities=16%  Similarity=0.171  Sum_probs=28.2

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHhCCCEEEEEc
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQAFGFIISYNS  109 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~  109 (223)
                      ||+|.|.| .|-||+.+++.|...|++|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            79999999 59999999999999999999986

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=89.18  E-value=0.2  Score=38.72  Aligned_cols=31  Identities=19%  Similarity=0.130  Sum_probs=28.9

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      |.|||.|-+|..+|..|...|.+|+++++..
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            7899999999999999999999999998754

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.16  E-value=0.24  Score=33.69  Aligned_cols=38  Identities=18%  Similarity=0.015  Sum_probs=30.3

Q ss_pred             CCEEEEEecChHHHHHHHHHHhCC---CEEEEEcCCCCCCC
Q 035615           79 GMQVGIVRLGNIGSEVLNRLQAFG---FIISYNSRRKRPSV  116 (223)
Q Consensus        79 g~~vgIiG~G~iG~~~a~~l~~~G---~~V~~~~~~~~~~~  116 (223)
                      .+++.|||-|.+|-.+|..+..+|   .+|..+.+.+....
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~   60 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILR   60 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSST
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhc
Confidence            478999999999999998877665   46888877665443

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.07  E-value=0.17  Score=40.23  Aligned_cols=33  Identities=21%  Similarity=0.216  Sum_probs=29.9

Q ss_pred             EEEEEecChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .|.|||.|..|-.+|..|+..|.+|.+++.+..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            489999999999999999999999999987654

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=89.04  E-value=0.23  Score=39.12  Aligned_cols=58  Identities=19%  Similarity=0.134  Sum_probs=40.7

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhc--CCcEEEEec
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAV--NSDVLVVCC  138 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~--~aDiv~~~~  138 (223)
                      -|+|.|.| .|-||+.+++.|...|..|++.+...+.  .......++++++  ..|+|+.+.
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~~--~~~~~~~~~~~~~~~~~d~v~~~a   62 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDEL--NLLDSRAVHDFFASERIDQVYLAA   62 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTC--CTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchhc--cccCHHHHHHHHhhcCCCEEEEcc
Confidence            47899999 5999999999999999998877654332  1122233445543  478887665

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=88.99  E-value=0.2  Score=37.94  Aligned_cols=32  Identities=13%  Similarity=0.014  Sum_probs=29.5

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      |.|||.|..|...|..|...|++|+++++...
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            78999999999999999999999999987654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.93  E-value=0.26  Score=34.98  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=27.9

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      .+|.|||-|.+|-.+|..|+. +.+|..+++.+.
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~   33 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPV   33 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEecccc
Confidence            379999999999999999976 679988876543

>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: 2-methylacyl-CoA racemase Mcr
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.87  E-value=1  Score=36.31  Aligned_cols=89  Identities=13%  Similarity=0.014  Sum_probs=64.1

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-Cc------c-----------cccChhhhhcCCcEEEEec
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-LF------P-----------YCANVYDLAVNSDVLVVCC  138 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~~------~-----------~~~~l~el~~~aDiv~~~~  138 (223)
                      |.|-+|.=++-+.-|-...+.|..+|.+|+=+.+...... .+      +           ...-+.+|+++||+|+-..
T Consensus         4 L~girVld~~~~~agp~~~~~lad~GA~VikvE~p~~~~~~~~~~~nr~K~si~lDl~~~~g~~~~~~Lv~~aDv~i~n~   83 (359)
T d1x74a1           4 LSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIEGY   83 (359)
T ss_dssp             TTTCEEEEECCSTHHHHHHHHHHHTTCEEEEEECC-----CCCCGGGCSCEEEECCTTSHHHHHHHHHHHTTCSEEEECS
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHhCCEEEEECCCCCCCchhhhhhhCCCeEEEEeCcCHHHHHHHHHHHhhCCEEEecC
Confidence            7899998888888888999999999999987654321110 00      0           0123567899999999877


Q ss_pred             cCChhhhhccCHHHHhcCCCCcEEEEc
Q 035615          139 ALTEQTHHIINKDVMAELGKGGMIINV  165 (223)
Q Consensus       139 p~t~~t~~li~~~~l~~mk~ga~lIN~  165 (223)
                      +-..-.+-=++.+.++...|+.+.+.+
T Consensus        84 ~pg~~~~lgl~~~~l~~~nP~lI~~si  110 (359)
T d1x74a1          84 RPGVTERLGLGPEECAKVNDRLIYARM  110 (359)
T ss_dssp             CTTHHHHHTCSHHHHHHHCTTCEEEEE
T ss_pred             CCCchhhcCCCHHHHHhhcCCceEEEE
Confidence            533333334689999999999999987

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.85  E-value=0.18  Score=37.14  Aligned_cols=30  Identities=20%  Similarity=0.245  Sum_probs=24.6

Q ss_pred             EEEEEecChHHHHHHHHHHhC-CCEEEEEcC
Q 035615           81 QVGIVRLGNIGSEVLNRLQAF-GFIISYNSR  110 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~  110 (223)
                      +|||=|||+||+.+.+.+... .++|.+.+.
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd   32 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAIND   32 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECC
Confidence            799999999999999988754 567777653

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.85  E-value=0.15  Score=37.74  Aligned_cols=35  Identities=9%  Similarity=-0.125  Sum_probs=31.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      +.++|.|||-|..|-..|..+..+|++|+++++..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            46789999999999999999999999999887543

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.73  E-value=0.17  Score=37.73  Aligned_cols=31  Identities=23%  Similarity=0.223  Sum_probs=28.5

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      |.|||.|..|...|..+..+|.+|+++++..
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            7899999999999999999999999997654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.62  E-value=0.18  Score=39.47  Aligned_cols=31  Identities=23%  Similarity=0.180  Sum_probs=28.7

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      |.|||.|..|-..|..|+..|++|+++++..
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999998654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.59  E-value=0.25  Score=35.61  Aligned_cols=35  Identities=11%  Similarity=-0.003  Sum_probs=29.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRK  112 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~  112 (223)
                      .+++|.|||-|+.|-..|..+..+|++ |..+.|..
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            467899999999999999999999986 66665544

>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB
species: Escherichia coli [TaxId: 562]

Probab=88.22  E-value=0.9  Score=37.26  Aligned_cols=91  Identities=11%  Similarity=0.100  Sum_probs=66.0

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-----C--------Cccc----------ccChhhhhcCCc
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-----V--------LFPY----------CANVYDLAVNSD  132 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~--------~~~~----------~~~l~el~~~aD  132 (223)
                      -|.|-+|.=++-+.-|-..++.|..+|.+|+=+.+.....     .        +.+.          ..-+.+|+++||
T Consensus         8 PL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~~n~~K~si~ldl~~~~G~~~~~~Lv~~aD   87 (402)
T d1xk7a1           8 PLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTD   87 (402)
T ss_dssp             TTTTCEEEEECCSSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHHHTTTCEEEEECTTSHHHHHHHHHHHTTCS
T ss_pred             CCCCCEEEEeCChhHHHHHHHHHHHhCCeEEEECCCCCCCccccCCchhHHhCCCCeEEEEeCcCHHHHHHHHHHHhhcC
Confidence            4899999999988889888999999999999776433110     0        0000          123568999999


Q ss_pred             EEEEeccCChhhhhccCHHHHhcCCCCcEEEEcC
Q 035615          133 VLVVCCALTEQTHHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       133 iv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      +|+-..+-..--+-=++.+.++.+.|.-+.+.++
T Consensus        88 v~i~n~rpg~~~~lGl~~~~L~~~nP~lI~~sis  121 (402)
T d1xk7a1          88 IFIEASKGPAFARRGITDEVLWQHNPKLVIAHLS  121 (402)
T ss_dssp             EEEEECSSSHHHHTTCCHHHHHHHCTTCEEEEEE
T ss_pred             Cceeeecccccccccccccchhhccccccceeee
Confidence            9998775333333347889999999999988774

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.20  E-value=0.23  Score=37.09  Aligned_cols=31  Identities=23%  Similarity=0.258  Sum_probs=28.6

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      |.|||.|..|...|..+...|.+|.+++...
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            7899999999999999999999999998654

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=88.19  E-value=0.56  Score=37.81  Aligned_cols=109  Identities=11%  Similarity=0.128  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhC----CC-------EEE
Q 035615           38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAF----GF-------IIS  106 (223)
Q Consensus        38 vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~----G~-------~V~  106 (223)
                      +|=-+++-+++.+|-                    .+..|...+|.|.|.|.-|-.+|+.+...    |.       +++
T Consensus         4 Ta~V~lAglinAlki--------------------~gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~   63 (308)
T d1o0sa1           4 TASVIVAGLLTCTRV--------------------TKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIY   63 (308)
T ss_dssp             HHHHHHHHHHHHHHH--------------------HCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEE
T ss_pred             HHHHHHHHHHHHHHH--------------------hCCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEE
Confidence            344567777776663                    24568899999999999999999987643    32       377


Q ss_pred             EEcCCCC----CC--C----Cc----ccccChhhhhc--CCcEEEEeccCChhhhhccCHHHHhcC---CCCcEEEEcCC
Q 035615          107 YNSRRKR----PS--V----LF----PYCANVYDLAV--NSDVLVVCCALTEQTHHIINKDVMAEL---GKGGMIINVGR  167 (223)
Q Consensus       107 ~~~~~~~----~~--~----~~----~~~~~l~el~~--~aDiv~~~~p~t~~t~~li~~~~l~~m---k~ga~lIN~ar  167 (223)
                      .+|+..-    ..  .    .+    ....++.++++  +-++++-+-    ..-++++++.++.|   .+..++.=.|.
T Consensus        64 ~vD~~Glv~~~r~d~~~~k~~~a~~~~~~~~l~~~i~~~kptvliG~s----~~~g~ft~evv~~Ma~~~~~PIIFaLSN  139 (308)
T d1o0sa1          64 LMDIDGLVTKNRKEMNPRHVQFAKDMPETTSILEVIRAARPGALIGAS----TVRGAFNEEVIRAMAEINERPIIFALSN  139 (308)
T ss_dssp             EEETTEECBTTCSSCCGGGTTTCBSSCCCCCHHHHHHHHCCSEEEECS----SCTTCSCHHHHHHHHHHCSSCEEEECCS
T ss_pred             EEeCCCCccCCCcccCHHHHHHHHhcccCCcHHHHHhccccccEEecc----cccCCCCHHHHHHHHhhCCCcEEEEccC
Confidence            7775421    00  0    01    01234555543  223443322    12456666666554   36677777776


Q ss_pred             Ccc
Q 035615          168 GAL  170 (223)
Q Consensus       168 g~~  170 (223)
                      -..
T Consensus       140 Ptp  142 (308)
T d1o0sa1         140 PTS  142 (308)
T ss_dssp             SGG
T ss_pred             CCC
Confidence            543

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=88.11  E-value=0.24  Score=38.80  Aligned_cols=32  Identities=19%  Similarity=0.360  Sum_probs=28.6

Q ss_pred             EEEEEecChHHHHHHHHHHhCCC-EEEEEcCCC
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRK  112 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~  112 (223)
                      .|.|||.|-+|-++|..|...|. +|.++++..
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            48999999999999999999997 599998764

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.03  E-value=0.5  Score=37.76  Aligned_cols=32  Identities=22%  Similarity=0.179  Sum_probs=27.8

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCC
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRR  111 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~  111 (223)
                      |.|.|.| .|-||+.+++.|...|++|+++|+.
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~   34 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNL   34 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECC
Confidence            6677888 5999999999999999999988753

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=87.72  E-value=0.21  Score=36.94  Aligned_cols=30  Identities=23%  Similarity=0.313  Sum_probs=24.5

Q ss_pred             EEEEEecChHHHHHHHHHHhC-CCEEEEEcC
Q 035615           81 QVGIVRLGNIGSEVLNRLQAF-GFIISYNSR  110 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~  110 (223)
                      +|||=|||+||+.+.+.+... .++|.+.+.
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd   33 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVND   33 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcC
Confidence            799999999999999988643 567777664

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.68  E-value=0.16  Score=38.08  Aligned_cols=34  Identities=12%  Similarity=-0.007  Sum_probs=29.3

Q ss_pred             CEEEEEecChHHHHHHHHHHhCC-------CEEEEEcCCCC
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFG-------FIISYNSRRKR  113 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G-------~~V~~~~~~~~  113 (223)
                      .+|+|||.|.-|-+.|..|...|       ++|.+|++.+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            58999999999999999998766       58999987654

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=87.42  E-value=0.29  Score=35.23  Aligned_cols=30  Identities=23%  Similarity=0.139  Sum_probs=27.7

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEEcCC
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRR  111 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  111 (223)
                      |.|||-|..|-..|..+..+|.+|..+++.
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            789999999999999999999999988764

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=87.23  E-value=0.22  Score=36.20  Aligned_cols=37  Identities=14%  Similarity=0.042  Sum_probs=31.7

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           78 GGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        78 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      .|.+|.|.|. |.+|...++.++.+|++|++.++++++
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k   65 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQK   65 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHH
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHH
Confidence            4889999965 559999999999999999999887643

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.13  E-value=0.043  Score=41.46  Aligned_cols=25  Identities=20%  Similarity=0.155  Sum_probs=22.6

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFI  104 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~  104 (223)
                      ++|.|||.|-+|-..|..|+..|.+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~   25 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHS   25 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCC
Confidence            5799999999999999999988764

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.04  E-value=0.31  Score=38.95  Aligned_cols=35  Identities=20%  Similarity=0.047  Sum_probs=30.5

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           78 GGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        78 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      .-|+|.|.| .|-||+.+++.|...|++|+++|+..
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~   50 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   50 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            457899998 59999999999999999999998643

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=87.04  E-value=0.38  Score=36.76  Aligned_cols=35  Identities=23%  Similarity=0.130  Sum_probs=28.1

Q ss_pred             CEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           80 MQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        80 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      |.|.|.|. +.||+++|+.|...|++|++.+++..+
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~   37 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE   37 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH
Confidence            34566674 779999999999999999988876543

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.98  E-value=0.26  Score=36.85  Aligned_cols=31  Identities=16%  Similarity=0.060  Sum_probs=28.4

Q ss_pred             EEEEEecChHHHHHHHHHHhCCCEEEEEcCC
Q 035615           81 QVGIVRLGNIGSEVLNRLQAFGFIISYNSRR  111 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  111 (223)
                      -|.|||.|..|...|..++.+|.+|.++++.
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            4899999999999999999999999998754

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.66  E-value=0.31  Score=38.79  Aligned_cols=34  Identities=26%  Similarity=0.199  Sum_probs=29.0

Q ss_pred             CEE-EEEe-cChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           80 MQV-GIVR-LGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        80 ~~v-gIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      |+| .|.| .|-||+.+++.|...|++|++++|...
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~   36 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   36 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            567 5777 599999999999999999999988643

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.29  E-value=0.23  Score=36.33  Aligned_cols=95  Identities=15%  Similarity=0.101  Sum_probs=51.2

Q ss_pred             EEEEEecChHHHHHHHHHHhC--CC--EEEEEcCCCCC--------CC-----------CcccccChh---hhh---cCC
Q 035615           81 QVGIVRLGNIGSEVLNRLQAF--GF--IISYNSRRKRP--------SV-----------LFPYCANVY---DLA---VNS  131 (223)
Q Consensus        81 ~vgIiG~G~iG~~~a~~l~~~--G~--~V~~~~~~~~~--------~~-----------~~~~~~~l~---el~---~~a  131 (223)
                      +|+|+|+|.+|+.+++.+...  +.  +|.+...+...        ..           ......+++   +..   ...
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPKP   85 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTCSSC
T ss_pred             EEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccccccHHHHHHHhccCCCc
Confidence            699999999999999988753  33  44443221110        00           000011222   211   233


Q ss_pred             cEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 035615          132 DVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFL  180 (223)
Q Consensus       132 Div~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL  180 (223)
                      |+++-+. .+++....    ..+.++.|.-+|-...+.+...-+.++.|
T Consensus        86 ~vivd~t-~~~~~~~~----~~~aL~~G~hVVTANK~~la~~~~~~~~L  129 (168)
T d1ebfa1          86 VILVDNT-SSAYIAGF----YTKFVENGISIATPNKKAFSSDLATWKAL  129 (168)
T ss_dssp             EEEEECS-CCHHHHTT----HHHHHHTTCEEECCCCGGGSSCHHHHHHH
T ss_pred             eEEEEec-CChHHHHH----HHHHHHcCCeEEecCcccccCCHHHHHHH
Confidence            4444444 33333332    23346778889988888877655555555

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.27  E-value=0.37  Score=36.15  Aligned_cols=32  Identities=13%  Similarity=-0.012  Sum_probs=29.1

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      |.|||.|..|...|..+..+|++|.+++..+.
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~kV~viE~~~~   37 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTP   37 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCCCEEEECCCCC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            78999999999999999999999999986543

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.27  E-value=0.34  Score=35.92  Aligned_cols=30  Identities=13%  Similarity=0.066  Sum_probs=27.7

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEEcCC
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRR  111 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  111 (223)
                      +.|||.|..|...|..+..+|.+|.+++..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999998753

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.08  E-value=0.43  Score=37.69  Aligned_cols=33  Identities=24%  Similarity=0.144  Sum_probs=29.3

Q ss_pred             CEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           80 MQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        80 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      |++.|.| .|-||+.+++.|...|++|++++|..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            6778888 59999999999999999999998754

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=86.02  E-value=0.67  Score=31.99  Aligned_cols=40  Identities=20%  Similarity=0.171  Sum_probs=34.7

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      +...+||+|.|||-|.-+-.-|..|..+.-+|+.+.|.+.
T Consensus        25 ~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~   64 (126)
T d1fl2a2          25 GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE   64 (126)
T ss_dssp             GGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             hhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEecccc
Confidence            4567899999999999999999999999889988876543

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=85.90  E-value=0.38  Score=37.94  Aligned_cols=34  Identities=21%  Similarity=0.143  Sum_probs=29.5

Q ss_pred             EEEEecChHHHHHHHHHH-----hCCCEEEEEcCCCCCC
Q 035615           82 VGIVRLGNIGSEVLNRLQ-----AFGFIISYNSRRKRPS  115 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~-----~~G~~V~~~~~~~~~~  115 (223)
                      |.|||.|..|..+|..|.     ..|.+|.++++.+...
T Consensus        10 V~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1          10 VLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             EEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            899999999999999995     5799999999876543

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=85.79  E-value=0.42  Score=36.51  Aligned_cols=33  Identities=18%  Similarity=0.151  Sum_probs=30.3

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP  114 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  114 (223)
                      |.|||.|..|-..|-.|...|.+|.++++.+..
T Consensus         7 ViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           7 NIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            899999999999999999999999999987653

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=85.41  E-value=0.41  Score=35.94  Aligned_cols=31  Identities=19%  Similarity=0.103  Sum_probs=28.7

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      |.|||.|..|-..|..+..+|.+|.++++.+
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            7999999999999999999999999997654

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.65  E-value=0.22  Score=35.53  Aligned_cols=29  Identities=28%  Similarity=0.250  Sum_probs=26.2

Q ss_pred             cCCCEEEEEecChHHHHHHHHHHhCCCEE
Q 035615           77 LGGMQVGIVRLGNIGSEVLNRLQAFGFII  105 (223)
Q Consensus        77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V  105 (223)
                      -.|++|.|||.|.+|..+|..+..+|.++
T Consensus        27 ~~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          27 PVGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             ccCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            35899999999999999999999999863

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.46  E-value=0.26  Score=37.01  Aligned_cols=30  Identities=27%  Similarity=0.310  Sum_probs=22.5

Q ss_pred             CEEEEEecChHHHHHHHHHHhC-----CCEEEEEc
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAF-----GFIISYNS  109 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~-----G~~V~~~~  109 (223)
                      .+|||=|||+||+.+.+.+-..     ..+|..++
T Consensus         3 ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~In   37 (190)
T d1k3ta1           3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVV   37 (190)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEE
T ss_pred             eEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEe
Confidence            5899999999999999977532     24565543

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.34  E-value=0.48  Score=34.92  Aligned_cols=30  Identities=17%  Similarity=0.120  Sum_probs=27.6

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEEcCC
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRR  111 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  111 (223)
                      |.|||.|..|...|..++..|.+|.++++.
T Consensus         6 viVIG~GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            789999999999999999999999988754

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.15  E-value=0.5  Score=36.25  Aligned_cols=57  Identities=16%  Similarity=0.133  Sum_probs=39.2

Q ss_pred             CCEEEEEec-ChHHHHHHHHHH---hCCCEEEEEcCCCCCCCCcccccChhhhh-cCCcEEEEeccCC
Q 035615           79 GMQVGIVRL-GNIGSEVLNRLQ---AFGFIISYNSRRKRPSVLFPYCANVYDLA-VNSDVLVVCCALT  141 (223)
Q Consensus        79 g~~vgIiG~-G~iG~~~a~~l~---~~G~~V~~~~~~~~~~~~~~~~~~l~el~-~~aDiv~~~~p~t  141 (223)
                      -|||.|-|. +.||+++|+.|.   ..|++|+..+|+.+..+      +++++. ...++.++.+-.+
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~------~~~~~~~~~~~~~~~~~Dvs   63 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK------ELEDLAKNHSNIHILEIDLR   63 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH------HHHHHHHHCTTEEEEECCTT
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH------HHHHHHhcCCcEEEEEEEec
Confidence            478999996 789999999885   45899999998865432      233332 2356666665443

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.61  E-value=0.48  Score=37.74  Aligned_cols=32  Identities=22%  Similarity=0.266  Sum_probs=28.6

Q ss_pred             CCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcC
Q 035615           79 GMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSR  110 (223)
Q Consensus        79 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~  110 (223)
                      .|+|.|.| .|-||+.+++.|...|.+|++.|+
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            37899998 599999999999999999998875

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.60  E-value=0.84  Score=33.87  Aligned_cols=48  Identities=23%  Similarity=0.305  Sum_probs=36.4

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCCh
Q 035615           78 GGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTE  142 (223)
Q Consensus        78 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~  142 (223)
                      +.++||||-+ |++ +++++.++..|+++...+.             .++ +.++|.|++  |..+
T Consensus         5 ~~mkIgii~~~Gn~-~s~~~al~~~G~~~~~v~~-------------~~~-l~~~D~lIl--PGG~   53 (202)
T d1q7ra_           5 SNMKIGVLGLQGAV-REHVRAIEACGAEAVIVKK-------------SEQ-LEGLDGLVL--PGGE   53 (202)
T ss_dssp             CCCEEEEESCGGGC-HHHHHHHHHTTCEEEEECS-------------GGG-GTTCSEEEE--CCCC
T ss_pred             cCCEEEEEECCCCH-HHHHHHHHHCCCcEEEECC-------------HHH-HhcCCEEEE--CCCC
Confidence            5789999999 998 7788999999999877642             112 567888776  6543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.55  E-value=0.93  Score=37.84  Aligned_cols=86  Identities=19%  Similarity=0.156  Sum_probs=58.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----------------------------CcccccChhhh
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----------------------------LFPYCANVYDL  127 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----------------------------~~~~~~~l~el  127 (223)
                      .|.++.=||+|. |+.+...++.+|+ +|++++.++....                             ........++.
T Consensus       216 pgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~  294 (406)
T d1u2za_         216 KGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL  294 (406)
T ss_dssp             TTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred             CCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccc
Confidence            468888899885 6677777777887 7999988753211                             00111234567


Q ss_pred             hcCCcEEEEec-cCChhhhhccCHHHHhcCCCCcEEEEc
Q 035615          128 AVNSDVLVVCC-ALTEQTHHIINKDVMAELGKGGMIINV  165 (223)
Q Consensus       128 ~~~aDiv~~~~-p~t~~t~~li~~~~l~~mk~ga~lIN~  165 (223)
                      +..+|+|+++. -..++....+ .+.+..||||+.||-.
T Consensus       295 ~~~adVV~inn~~f~~~l~~~L-~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         295 IPQCDVILVNNFLFDEDLNKKV-EKILQTAKVGCKIISL  332 (406)
T ss_dssp             GGGCSEEEECCTTCCHHHHHHH-HHHHTTCCTTCEEEES
T ss_pred             cccceEEEEecccCchHHHHHH-HHHHHhcCCCcEEEEe
Confidence            88899998753 2344555555 5788999999999864

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=83.50  E-value=0.15  Score=39.45  Aligned_cols=34  Identities=15%  Similarity=0.117  Sum_probs=26.3

Q ss_pred             CEEE-EEec-ChHHHHHHHHHHhCCCE-------EEEEcCCCC
Q 035615           80 MQVG-IVRL-GNIGSEVLNRLQAFGFI-------ISYNSRRKR  113 (223)
Q Consensus        80 ~~vg-IiG~-G~iG~~~a~~l~~~G~~-------V~~~~~~~~  113 (223)
                      |+|. |-|. +.||+++|+.|...|++       |+.++|+..
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~   43 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAA   43 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHH
Confidence            4544 5575 67999999999998987       778887653

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.35  E-value=0.35  Score=41.93  Aligned_cols=37  Identities=19%  Similarity=0.238  Sum_probs=32.4

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615           75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR  111 (223)
Q Consensus        75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  111 (223)
                      ..|+.++|.|||+|.+|..+++.|...|. ++..+|..
T Consensus        21 ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d   58 (529)
T d1yova1          21 EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGN   58 (529)
T ss_dssp             HHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            46899999999999999999999998897 57777654

>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Formyl-CoA transferase
species: Oxalobacter formigenes [TaxId: 847]

Probab=83.33  E-value=1.4  Score=36.28  Aligned_cols=91  Identities=15%  Similarity=0.087  Sum_probs=65.2

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC---------CCC-----c------cc-----------ccCh
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP---------SVL-----F------PY-----------CANV  124 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~---------~~~-----~------~~-----------~~~l  124 (223)
                      .|.|-+|.=++-...|-..++.|..+|++|+=+.+....         ..+     +      ++           ..-+
T Consensus         3 PL~GirVld~~~~~agp~~~~~LadlGAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~~~   82 (427)
T d2vjma1           3 PLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFNCNKRSIELDMKTPEGKELL   82 (427)
T ss_dssp             TTTTCEEEECCCTTHHHHHHHHHHHTTCEEEEEECTTTCSGGGGSSCSSTTSCCHHHHTTCSSCEEEECCTTSHHHHHHH
T ss_pred             CCCCCEEEEcCChhHHHHHHHHHHHhCCeEEEECCCCCCCcccccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHHHH
Confidence            488999988888788888899999999999987643210         000     0      00           1236


Q ss_pred             hhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcC
Q 035615          125 YDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVG  166 (223)
Q Consensus       125 ~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~a  166 (223)
                      .+|+++||+|+-..+-..--+-=++.+.++...|.-+...++
T Consensus        83 ~~Lv~~aDv~i~n~~pg~~~rlGL~~~~l~~~NP~LI~~sis  124 (427)
T d2vjma1          83 EQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASVK  124 (427)
T ss_dssp             HHHHHHCSEEEECCSTTHHHHTTCCHHHHHHHCTTCEEEEEE
T ss_pred             HHHHHhCCeeeECCCcchHHHcCCCchhhhhhCCccceeeee
Confidence            688999999998775332233347899999999999988874

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=83.12  E-value=1.2  Score=35.59  Aligned_cols=120  Identities=15%  Similarity=0.141  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhC----CC-------EEE
Q 035615           38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAF----GF-------IIS  106 (223)
Q Consensus        38 vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~----G~-------~V~  106 (223)
                      +|=-+++-+|+.+|-                    .+.+|+..+|.|.|.|.-|-.+++.+...    |+       +++
T Consensus         4 TaaV~lAglinAlki--------------------~gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~   63 (298)
T d1gq2a1           4 TASVAVAGLLAALRI--------------------TKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIW   63 (298)
T ss_dssp             HHHHHHHHHHHHHHH--------------------HTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEE
T ss_pred             HHHHHHHHHHHHHHH--------------------hCCCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEE
Confidence            344566777776663                    34568999999999999999999988643    32       477


Q ss_pred             EEcCCCC----C--CCCc--------ccccChhhhhcC--CcEEEEeccCChhhhhccCHHHHh---cCCCCcEEEEcCC
Q 035615          107 YNSRRKR----P--SVLF--------PYCANVYDLAVN--SDVLVVCCALTEQTHHIINKDVMA---ELGKGGMIINVGR  167 (223)
Q Consensus       107 ~~~~~~~----~--~~~~--------~~~~~l~el~~~--aDiv~~~~p~t~~t~~li~~~~l~---~mk~ga~lIN~ar  167 (223)
                      .+|+..-    +  ....        ....+++++.+.  .++++-...    .-++++++.++   .|.+..++.=.|+
T Consensus        64 l~D~kGlv~~~R~~l~~~k~~~a~~~~~~~~l~~~i~~vkptvliG~s~----~~g~ft~evv~~ma~~~~~PIIFaLSN  139 (298)
T d1gq2a1          64 MVDSKGLIVKGRASLTPEKEHFAHEHCEMKNLEDIVKDIKPTVLIGVAA----IGGAFTQQILQDMAAFNKRPIIFALSN  139 (298)
T ss_dssp             EEETTEECBTTCSSCCTTGGGGCBSCCCCCCHHHHHHHHCCSEEEECSC----CTTCSCHHHHHHHHHHCSSCEEEECCS
T ss_pred             EEeCCCcccCCCcccCHHHHHHHHHhhhhhhhHHHhhccChheeEeccc----ccCcCCHHHHHHHHhhCCCCEEEEccC
Confidence            7775421    1  1000        112355555542  445544321    23567776555   4557778887776


Q ss_pred             Ccc---cCHHHHHHHHH
Q 035615          168 GAL---IDEKEMLQFLV  181 (223)
Q Consensus       168 g~~---vd~~al~~aL~  181 (223)
                      -..   .+.++.+++-+
T Consensus       140 Pt~~~E~~~~~a~~wt~  156 (298)
T d1gq2a1         140 PTSKAECTAEQLYKYTE  156 (298)
T ss_dssp             SGGGCSSCHHHHHHHTT
T ss_pred             CCCcCCCCHHHHhhhcc
Confidence            543   23444444433

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=82.76  E-value=0.57  Score=35.95  Aligned_cols=30  Identities=10%  Similarity=0.100  Sum_probs=27.9

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEEcCC
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRR  111 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  111 (223)
                      +.|||.|..|...|.++..+|.+|..+++.
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            689999999999999999999999999864

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=82.12  E-value=0.66  Score=36.21  Aligned_cols=31  Identities=16%  Similarity=0.096  Sum_probs=29.0

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615           82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRRK  112 (223)
Q Consensus        82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  112 (223)
                      |.|||.|..|-..|..|...|.+|+++++.+
T Consensus        19 VlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          19 VVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            8999999999999999999999999998754

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=81.33  E-value=0.66  Score=35.92  Aligned_cols=36  Identities=11%  Similarity=0.108  Sum_probs=30.6

Q ss_pred             CCCEEEEEecChHHHHHHHHHHh-CCCEEEEEcCCCC
Q 035615           78 GGMQVGIVRLGNIGSEVLNRLQA-FGFIISYNSRRKR  113 (223)
Q Consensus        78 ~g~~vgIiG~G~iG~~~a~~l~~-~G~~V~~~~~~~~  113 (223)
                      ...-|.|||.|.-|-..|..|.. .|++|.++++.+.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            35569999999999999999865 6999999997653

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.53  E-value=1.3  Score=30.67  Aligned_cols=38  Identities=18%  Similarity=0.223  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615           76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKR  113 (223)
Q Consensus        76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  113 (223)
                      -.+||+|.|||-|+-+-.-|..|..+--+|+++.|..+
T Consensus        31 ~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   68 (130)
T d1vdca2          31 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDA   68 (130)
T ss_dssp             GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             HhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccc
Confidence            35799999999999999999999999889998877654

>d2c42a4 c.64.1.1 (A:416-668) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III {Desulfovibrio africanus [TaxId: 873]}

class: Alpha and beta proteins (a/b)
fold: Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
superfamily: Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
family: Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
species: Desulfovibrio africanus [TaxId: 873]

Probab=80.34  E-value=5.3  Score=30.55  Aligned_cols=108  Identities=13%  Similarity=0.107  Sum_probs=61.8

Q ss_pred             EEEEEecChHHHH-----HHHHHH-hCCCEEEEEcCCCCCCCCcc-----ccc--Ch--hhhhcCCcEEEEeccCChhhh
Q 035615           81 QVGIVRLGNIGSE-----VLNRLQ-AFGFIISYNSRRKRPSVLFP-----YCA--NV--YDLAVNSDVLVVCCALTEQTH  145 (223)
Q Consensus        81 ~vgIiG~G~iG~~-----~a~~l~-~~G~~V~~~~~~~~~~~~~~-----~~~--~l--~el~~~aDiv~~~~p~t~~t~  145 (223)
                      ++-+.|+|.-|.-     +++.+. ..|+.+.+|-....+..+..     ++.  ..  .....++|+++++-|..   .
T Consensus         4 ~~~f~G~G~~Gtv~a~k~~~kii~~~~g~~~q~~~~Y~s~krGG~~~s~lR~s~~pI~s~~~v~~aD~vv~~~~~~---l   80 (253)
T d2c42a4           4 QCQFWGLGADGTVGANKQAIKIIGDNTDLFAQGYFSYDSKKSGGITISHLRFGEKPIQSTYLVNRADYVACHNPAY---V   80 (253)
T ss_dssp             EEEEEEETTSSHHHHHHHHHHHHHHHSSCEEEEEEECCSSSSSCEEEEEEEEESSCCCCCSCCSSCSEEEESCGGG---G
T ss_pred             EEEEEecCCchHHHHHHHHHHHHHHhcCceEEEeeCCCccccCCeEEEEEEEcCceecCccccCCCCEEEEcCHHH---H
Confidence            5678888877744     444443 56899887755444333221     111  11  12467899999876522   1


Q ss_pred             hccCHHHHhcCCCCcE-EEEcCCCcccC-----HHHHHHHHHcCCceEEEeeCC
Q 035615          146 HIINKDVMAELGKGGM-IINVGRGALID-----EKEMLQFLVQGDINGVGLDVF  193 (223)
Q Consensus       146 ~li~~~~l~~mk~ga~-lIN~arg~~vd-----~~al~~aL~~~~i~~a~lDV~  193 (223)
                      .-+  +.++.+|+|++ |+|+.....-+     ...+.+.+.+..+..+.+|..
T Consensus        81 ~~~--~~l~~lk~gg~iIlNs~~~~~e~~~~~lP~~~~~~l~~~~~~v~~idA~  132 (253)
T d2c42a4          81 GIY--DILEGIKDGGTFVLNSPWSSLEDMDKHLPSGIKRTIANKKLKFYNIDAV  132 (253)
T ss_dssp             GTS--CTTTTCCTTCEEEEECSCCSHHHHHHHSCHHHHHHHHHTTCEEEEECHH
T ss_pred             HHh--hHhhccCCCcEEEEecccCCccchhhhhhHHHHHHHhhcCCeEEEechH
Confidence            112  24556777665 55775443211     134567777888887777753

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.33  E-value=3.2  Score=30.67  Aligned_cols=124  Identities=18%  Similarity=0.253  Sum_probs=66.5

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEEEE-EcCCCCCCC--------------Ccc--ccc---C--hhhhh--cCCcEEE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFIISY-NSRRKRPSV--------------LFP--YCA---N--VYDLA--VNSDVLV  135 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~-~~~~~~~~~--------------~~~--~~~---~--l~el~--~~aDiv~  135 (223)
                      +++.++|.+.+|..+.+.|...|.+|.+ +....++..              +..  ...   +  +.+.+  .+.|+++
T Consensus         1 Mkiv~~~~~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~i~~~~~Dlii   80 (203)
T d2blna2           1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIF   80 (203)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHHTCCSEEE
T ss_pred             CeEEEEecCHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccchhhhhhhhhhccccee
Confidence            5789999999999999999989999864 433222110              000  001   1  11222  2678777


Q ss_pred             EeccCChhhhhccCHHHHhcCCCCcEEEEcC-----CCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CCCCCCce
Q 035615          136 VCCALTEQTHHIINKDVMAELGKGGMIINVG-----RGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK-EPLRLDNI  209 (223)
Q Consensus       136 ~~~p~t~~t~~li~~~~l~~mk~ga~lIN~a-----rg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~-~l~~~~nv  209 (223)
                      +.-     ...+|.++.++..+.+.+=+-.|     ||.--    +..++.+|.-. .+.=++.-++-.+. +.+....+
T Consensus        81 ~~g-----~~~ii~~~il~~~~~~~iN~H~slLP~yrG~~p----~~wai~~g~~~-~G~Tih~i~~~iD~G~Il~q~~~  150 (203)
T d2blna2          81 SFY-----YRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAP----LNWVLVNGETE-TGVTLHRMVKRADAGAIVAQLRI  150 (203)
T ss_dssp             EES-----CCSCCCHHHHTTCTTCEEEEESSCTTTTEESCH----HHHHHHTTCSE-EEEEEEECCSSTTCSCEEEEEEE
T ss_pred             eee-----cccchhcccchhhHHHHHHHhhhcchhhhhhhh----hhhhhhccccc-ccceeEEeeccCCCccceeeccc
Confidence            653     24567788887766655444444     45433    44555555422 23444433333332 54444444


Q ss_pred             EEcc
Q 035615          210 VLLP  213 (223)
Q Consensus       210 ~~TP  213 (223)
                      -+.|
T Consensus       151 ~i~~  154 (203)
T d2blna2         151 AIAP  154 (203)
T ss_dssp             ECCT
T ss_pred             cccc
Confidence            4443

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=80.15  E-value=0.25  Score=35.81  Aligned_cols=26  Identities=15%  Similarity=0.189  Sum_probs=23.0

Q ss_pred             CEEEEEecChHHHHHHHHHHhCCCEE
Q 035615           80 MQVGIVRLGNIGSEVLNRLQAFGFII  105 (223)
Q Consensus        80 ~~vgIiG~G~iG~~~a~~l~~~G~~V  105 (223)
                      .+|.|||-|.+|-.+|..|+.+|.++
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v   29 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQG   29 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCS
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCce
Confidence            35999999999999999999988763