Citrus Sinensis ID: 035618

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110------
Protein Sequence
MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE
Secondary Structure (PSIPRED)
cccccccccHHHHccccccccccccccccccccHHHHccccccccccccccccccccHHHHcccccccEEcccccccccccHHHHccccccccccccccccccccHHHHccccccc
Secondary Structure Prediction (SSPRO)
EccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccHHHccHHHccc
Coil and Loop (DISEMBL)
mnnstgdipceigksshlHAFDLLFNHLFVeipndlgklnSLTKLILKWnqftgrlppeissfikleDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE
Flexible Loop (DISEMBL)
MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE
Low Complexity Region (SEG)
MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESlgkllklhyldlskNQFFQELPKELEKVVQLSE
Disordered region (IsUnstruct)
*********CEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQE*************
Disordered Region (DISOPRED)
MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL**
Disordered Region (DISEMBL)
MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKE*********
Disordered Region (DISPRO)
MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKV*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	116	2.2.26 [Sep-21-2011]
Q9LP24	1120	Probable leucine-rich rep	yes	no	0.982	0.101	0.426	6e-18
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.974	0.108	0.403	3e-15
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.974	0.098	0.385	8e-15
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.982	0.103	0.373	1e-13
Q9C9H7	847	Receptor-like protein 12	no	no	0.956	0.131	0.375	1e-13
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.931	0.089	0.381	4e-13
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.922	0.088	0.381	4e-13
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.870	0.084	0.362	5e-13
Q9LHP4	1141	Receptor-like protein kin	no	no	0.931	0.094	0.385	5e-13
C0LGF5	1072	Probable LRR receptor-lik	no	no	0.939	0.101	0.4	6e-13

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 1/115 (0%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           NN TG IP EI   + L   DL  N+LF E+P  +G L +L++L L  NQ +GR+P  +S
Sbjct: 568 NNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLS 627

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
               LE + LS N F S IP++    LKLH ++LS+N+F   +P+ L K+ QL++
Sbjct: 628 FLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPR-LSKLTQLTQ 681

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 1/114 (0%)

Query: 2   NNS-TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
           NNS TG IP EI   + L   DL  N +  E+P  +  +N ++KL L  N+ +G++P  I
Sbjct: 487 NNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGI 546

Query: 61  SSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
                LE + LS NRF S IP +L  L +L+Y++LS+N   Q +P+ L K+ QL
Sbjct: 547 RLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQL 600

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 60/114 (52%)

Query: 1   MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
           +N   G IP EIG    L  F   +N++  EIP ++GKL +L  LIL  NQ TG +PPE 
Sbjct: 408 LNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEF 467

Query: 61  SSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
            +   +E +  + NR    +P+  G L +L  L L  N F  E+P EL K   L
Sbjct: 468 FNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPELGKCTTL 521

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 61/115 (53%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N  +G IP EI     L    L  N L   +P  L KL +LT LIL  N+ +G +PP + 
Sbjct: 197 NGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVG 256

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
           +  +LE + L  N F  SIP  +GKL K+  L L  NQ   E+P+E+  ++  +E
Sbjct: 257 NISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAE 311

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 59/112 (52%)

Query: 3   NSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISS 62
           N  G+IP  +G  SHL   +L FN    EIP  +G LN L  LIL  N  TG +P  + +
Sbjct: 121 NLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGN 180

Query: 63  FIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
             +L ++ L  NR +  IP+S+G L +L  L L+ N    E+P  L  +  L
Sbjct: 181 LSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNL 232

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 59/110 (53%)

Query: 6   GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIK 65
           G IP  +   S L + DL FN+L   IP+ LG L+ L  LIL  NQ +G +P E+     
Sbjct: 441 GPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQA 500

Query: 66  LEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115
           LE++ L  N     IP SL    KL+++ LS NQ   E+P  L ++  L+
Sbjct: 501 LENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLA 550

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 59/110 (53%)

Query: 6   GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIK 65
           G IP  +   S L + DL FN+L   IP+ LG L+ L  LIL  NQ +G +P E+     
Sbjct: 441 GPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQA 500

Query: 66  LEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115
           LE++ L  N     IP SL    KL+++ LS NQ   E+P  L ++  L+
Sbjct: 501 LENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLA 550

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 59/113 (52%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           NN TG+IP  + KS++L  F   +N L   +P ++G   SL +L+L  NQ TG +P EI 
Sbjct: 434 NNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIG 493

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
               L  + L+ N F   IP  LG    L  LDL  N    ++P ++  + QL
Sbjct: 494 KLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQL 546

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 56/109 (51%)

Query: 6   GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIK 65
           G +P EIG  S L   DL  N L   +PN +  L+ L  L +  NQF+G++P  +   + 
Sbjct: 504 GKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVS 563

Query: 66  LEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
           L  + LS N F  SIP SLG    L  LDL  N+   E+P EL  +  L
Sbjct: 564 LNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENL 612

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF5|Y1341_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 57/110 (51%)

Query: 5   TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFI 64
           +G IP ++G  S L    L  N L   IP +LGKL  +T L+L  N  +G +PPEIS+  
Sbjct: 249 SGTIPPQLGLCSELRNLYLHMNKLTGSIPKELGKLQKITSLLLWGNSLSGVIPPEISNCS 308

Query: 65  KLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
            L    +S N     IP  LGKL+ L  L LS N F  ++P EL     L
Sbjct: 309 SLVVFDVSANDLTGDIPGDLGKLVWLEQLQLSDNMFTGQIPWELSNCSSL 358

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
255545702	1008	receptor protein kinase, putative [Ricin	0.974	0.112	0.478	4e-20
225456159	1038	PREDICTED: probable LRR receptor-like se	0.982	0.109	0.478	2e-19
225456161	1037	PREDICTED: probable LRR receptor-like se	0.982	0.109	0.478	3e-19
147772402	996	hypothetical protein VITISV_022117 [Viti	0.784	0.091	0.469	1e-18
359491512	1078	PREDICTED: probable LRR receptor-like se	0.965	0.103	0.443	9e-18
224127210	310	predicted protein [Populus trichocarpa]	0.939	0.351	0.454	3e-17
147767326	1032	hypothetical protein VITISV_008862 [Viti	0.836	0.093	0.458	6e-17
359491509	1032	PREDICTED: probable LRR receptor-like se	0.732	0.082	0.458	6e-17
359484864	1091	PREDICTED: probable LRR receptor-like se	0.965	0.102	0.424	1e-16
297743684	789	unnamed protein product [Vitis vinifera]	0.715	0.105	0.439	1e-16

>gi|255545702|ref|XP_002513911.1| receptor protein kinase, putative [Ricinus communis] gi|223546997|gb|EEF48494.1| receptor protein kinase, putative [Ricinus communis]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/115 (47%), Positives = 74/115 (64%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           NN +G IP EIG ++ L   D   N L   IP +LGKL SL ++ L+ NQ +  +P E  
Sbjct: 454 NNISGIIPPEIGNAARLQGLDFSSNQLVGRIPKELGKLTSLVRVNLEDNQLSDGVPSEFG 513

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
           S   LE + LS NRF  SIP ++G L+KL+YL+LS NQF QE+P +L K+V LS+
Sbjct: 514 SLTDLESLDLSANRFNQSIPGNIGNLVKLNYLNLSNNQFSQEIPIQLGKLVHLSK 568

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456159|ref|XP_002278561.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/115 (47%), Positives = 70/115 (60%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           NN TG IP + G S++L   DL  NHL  EIP  +G L SL  LIL  NQ +G +PPE+ 
Sbjct: 483 NNITGSIPEDFGISTNLTLLDLSSNHLVGEIPKKMGSLTSLLGLILNDNQLSGSIPPELG 542

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
           S   LE + LS NR   SIPE LG  L LHYL+LS N+    +P ++ K+  LS+
Sbjct: 543 SLSHLEYLDLSANRLNGSIPEHLGDCLDLHYLNLSNNKLSHGIPVQMGKLSHLSQ 597

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456161|ref|XP_002278590.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/115 (47%), Positives = 70/115 (60%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           NN TG IP + G S++L   DL  NHL  EIP  +G L SL  LIL  NQ +G +PPE+ 
Sbjct: 483 NNITGSIPEDFGISTNLILLDLSSNHLVGEIPKKMGSLTSLLGLILNDNQLSGSIPPELG 542

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
           S   LE + LS NR   SIPE LG  L LHYL+LS N+    +P ++ K+  LS+
Sbjct: 543 SLSHLEYLDLSANRLNGSIPEHLGDCLDLHYLNLSNNKLSHGIPVQMGKLSHLSQ 597

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772402|emb|CAN73988.1| hypothetical protein VITISV_022117 [Vitis vinifera]

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/115 (46%), Positives = 70/115 (60%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           NN TG IP + G S+ L   DL  NHLF EIP  +G + SL KLIL  NQ +G +PPE+ 
Sbjct: 441 NNITGSIPEDFGISTDLTLLDLSSNHLFGEIPKKMGSVTSLWKLILNDNQLSGNIPPELG 500

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
           S   L  + LS NR   SIPE LG  L L+YL+LS N+    +P ++ K+  LS+
Sbjct: 501 SLADLGYLDLSANRLNGSIPEHLGDCLGLNYLNLSNNKLSHGIPVQMGKLGHLSQ 555

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491512|ref|XP_002278614.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 69/115 (60%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N+ TG IP + G S++L   DL  NHL  EIP  +G L SL +L L  NQ +G +PPE+ 
Sbjct: 490 NDITGSIPEDFGISTNLTLLDLSSNHLVGEIPKKMGSLTSLLELKLNDNQLSGSIPPELG 549

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
           S   L  + LS NR   SI E+LG  L LHYL+LS N+    +P ++ K+  LS+
Sbjct: 550 SLFSLAHLDLSANRLNGSITENLGACLNLHYLNLSNNKLSNRIPAQMGKLSHLSQ 604

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127210|ref|XP_002329427.1| predicted protein [Populus trichocarpa] gi|222870477|gb|EEF07608.1| predicted protein [Populus trichocarpa]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/110 (45%), Positives = 67/110 (60%)

Query: 5   TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFI 64
           TG IP E+G+S+ LH  DL  N L   IPN+LGKL SL  L L +N  +G++PPEI S  
Sbjct: 39  TGVIPPELGESTALHYLDLSSNKLEGRIPNELGKLKSLFNLTLSFNSLSGKIPPEIGSLP 98

Query: 65  KLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
            L  + L+ N    +IP+ LGK  K+ YL+LS N F   +P E+  +V L
Sbjct: 99  DLSYLDLAANNLSGTIPKQLGKCSKMLYLNLSNNSFHDGIPAEIGNLVSL 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767326|emb|CAN68996.1| hypothetical protein VITISV_008862 [Vitis vinifera]

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 66/109 (60%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           NN TG IP + G S+ L   +L  NHL  EIP  LG ++SL KLIL  N+ +G +PPE+ 
Sbjct: 480 NNITGSIPADFGISTQLTVLNLSSNHLVGEIPKKLGSVSSLWKLILNDNRLSGNIPPELG 539

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEK 110
           S   L  + LS NR   SIPE LG  L L+YL+LS N+    +P ++ K
Sbjct: 540 SLADLGYLDLSGNRLNGSIPEHLGNCLDLNYLNLSNNKLSHGIPVQMGK 588

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491509|ref|XP_002278522.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 66/109 (60%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           NN TG IP + G S+ L   +L  NHL  EIP  LG ++SL KLIL  N+ +G +PPE+ 
Sbjct: 480 NNITGSIPADFGISTQLTVLNLSSNHLVGEIPKKLGSVSSLWKLILNDNRLSGNIPPELG 539

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEK 110
           S   L  + LS NR   SIPE LG  L L+YL+LS N+    +P ++ K
Sbjct: 540 SLADLGYLDLSGNRLNGSIPEHLGNCLDLNYLNLSNNKLSHGIPVQMGK 588

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484864|ref|XP_002273966.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           NN +G IP ++G++  LH  DL  NHL  +IP +LGKL S+  L+L  NQ +G +P E+ 
Sbjct: 516 NNLSGIIPPQLGEAIQLHRLDLSSNHLLGKIPRELGKLTSMFHLVLSNNQLSGNIPLEVG 575

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
           +   LE + L+ N    SIP+ LG L KL +L+LSKN+F + +P E+  +  L
Sbjct: 576 NLFNLEHLSLTSNNLSGSIPKQLGMLSKLFFLNLSKNKFGESIPDEIGNMHSL 628

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743684|emb|CBI36567.3| unnamed protein product [Vitis vinifera]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 69/107 (64%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           NN +G IP ++G++  LH  DL  NHL  +IP +LGKL S+  L+L  NQ +G +P E+ 
Sbjct: 277 NNLSGIIPPQLGEAIQLHRLDLSSNHLLGKIPRELGKLTSMFHLVLSNNQLSGNIPLEVG 336

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKEL 108
           +   LE + L+ N    SIP+ LG L KL +L+LSKN+F + +P E+
Sbjct: 337 NLFNLEHLSLTSNNLSGSIPKQLGMLSKLFFLNLSKNKFGESIPDEI 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.982	0.101	0.373	3.7e-13
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.922	0.108	0.355	3.7e-12
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.922	0.119	0.355	1.1e-11
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.982	0.120	0.324	1.9e-11
TAIR|locus:2041150	1143	BRL2 "BRI1-like 2" [Arabidopsi	0.982	0.099	0.342	2e-11
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.922	0.122	0.345	3.7e-11
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.982	0.160	0.307	4.5e-11
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.956	0.108	0.342	7.4e-11
TAIR|locus:2084016	937	AT3G53590 [Arabidopsis thalian	0.965	0.119	0.312	8.5e-11
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.965	0.132	0.330	9.4e-11

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 3.7e-13, P = 3.7e-13
 Identities = 43/115 (37%), Positives = 62/115 (53%)

Query:     2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
             NN TG IP EI   + L   DL  N+LF E+P  +G L +L++L L  NQ +GR+P  +S
Sbjct:   568 NNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLS 627

Query:    62 SFIKLEDIGLSINRFISSIPESXXXXXXXXXXXXXXNQFFQELPKELEKVVQLSE 116
                 LE + LS N F S IP++              N+F   +P+ L K+ QL++
Sbjct:   628 FLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPR-LSKLTQLTQ 681

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 38/107 (35%), Positives = 52/107 (48%)

Query:     2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
             NN +G IP  +G  SHL +F+L +N+    +P+ +G L+ LT L L  N F G LP  + 
Sbjct:   170 NNFSGQIPSSLGYLSHLTSFNLSYNNFSGRVPSSIGNLSYLTTLRLSRNSFFGELPSSLG 229

Query:    62 SFIKLEDIGLSINRFISSIPESXXXXXXXXXXXXXXNQFFQELPKEL 108
             S   L D+ L  N F+  IP S              N F  E+P  L
Sbjct:   230 SLFHLTDLILDTNHFVGKIPSSLGNLSHLTSIDLHKNNFVGEIPFSL 276

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 38/107 (35%), Positives = 53/107 (49%)

Query:     2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
             N+  G I   I   SHL + DL +N    +I N +G L+ LT L L +NQF+G++P  I 
Sbjct:    68 NDFEGQITSSIENLSHLTSLDLSYNRFSGQILNSIGNLSRLTSLDLSFNQFSGQIPSSIG 127

Query:    62 SFIKLEDIGLSINRFISSIPESXXXXXXXXXXXXXXNQFFQELPKEL 108
             +   L  +GLS NRF   IP S              N+FF + P  +
Sbjct:   128 NLSHLTFLGLSGNRFFGQIPSSIGNLSHLTFLGLSGNRFFGQFPSSI 174

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 37/114 (32%), Positives = 56/114 (49%)

Query:     2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
             N+  G+IP  IG  SHL +  L +N     IP+ +  L+ LT L L  NQF+G++P  I 
Sbjct:   135 NDLDGEIPSSIGNLSHLTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQFSGQIPSSIG 194

Query:    62 SFIKLEDIGLSINRFISSIPESXXXXXXXXXXXXXXNQFFQELPKELEKVVQLS 115
             +   L  + LS N+F   IP S              N FF ++P  +  + +L+
Sbjct:   195 NLSHLTSLELSSNQFSGQIPSSIGNLSNLTFLSLPSNDFFGQIPSSIGNLARLT 248

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2041150 BRL2 "BRI1-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 39/114 (34%), Positives = 54/114 (47%)

Query:     1 MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
             +N   G IP EIG    L  F   +N++  EIP ++GKL +L  LIL  NQ TG +PPE 
Sbjct:   408 LNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEF 467

Query:    61 SSFIKLEDIGLSINRFISSIPESXXXXXXXXXXXXXXNQFFQELPKELEKVVQL 114
              +   +E +  + NR    +P+               N F  E+P EL K   L
Sbjct:   468 FNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPELGKCTTL 521

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0010233 "phloem transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009734 "auxin mediated signaling pathway" evidence=RCA;IMP

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 3.7e-11, P = 3.7e-11
 Identities = 37/107 (34%), Positives = 53/107 (49%)

Query:     2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
             NN  G+IP  +G  S+L   DL  N+   EIP+  G LN L+ L L  N+ +G LP E+ 
Sbjct:   169 NNFGGEIPSSLGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNLPLEVI 228

Query:    62 SFIKLEDIGLSINRFISSIPESXXXXXXXXXXXXXXNQFFQELPKEL 108
             +  KL +I LS N+F  ++P +              N F   +P  L
Sbjct:   229 NLTKLSEISLSHNQFTGTLPPNITSLSILESFSASGNNFVGTIPSSL 275

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 35/114 (30%), Positives = 54/114 (47%)

Query:     2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
             N+ +G +P  IG  SHL   DL  N    ++P+ +G L+ LT L L +N+F G+ P  I 
Sbjct:   155 NHFSGQVPSSIGNLSHLTFLDLYCNQFSGQVPSSIGNLSHLTTLELSFNRFFGQFPSSIG 214

Query:    62 SFIKLEDIGLSINRFISSIPESXXXXXXXXXXXXXXNQFFQELPKELEKVVQLS 115
                 L  + L +N F+  IP S              N F  ++P  +  + QL+
Sbjct:   215 GLSHLTTLNLFVNNFLGQIPSSIGNLSNLTSLYLCKNNFSGQIPSFIGNLSQLT 268

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 38/111 (34%), Positives = 53/111 (47%)

Query:     5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFI 64
             +G IP  +G  SHL    L  N+L  EIP+ +G LN LT   +  N+ +G LP  +S+  
Sbjct:   336 SGKIPFSLGNLSHLSHLSLSSNNLIGEIPSSIGNLNQLTNFYVGGNKLSGNLPATLSNLT 395

Query:    65 KLEDIGLSINRFISSIPESXXXXXXXXXXXXXXNQFFQELPKELEKVVQLS 115
             KL  I LS N+F  S+P S              N F   +   L K+  L+
Sbjct:   396 KLNTISLSSNQFTGSLPPSISQLSKLKFFFADDNPFIGAILSPLLKIPSLT 446

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2084016 AT3G53590 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 8.5e-11, P = 8.5e-11
 Identities = 35/112 (31%), Positives = 60/112 (53%)

Query:     3 NSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISS 62
             N +G++  E+G+  +L   D+++N+L   IP ++G+++SL  L+L  N+FTG LPPE+ +
Sbjct:    90 NLSGELAPEVGQLLYLEILDVMWNNLTGRIPLEIGRISSLKLLLLNGNKFTGSLPPELGN 149

Query:    63 FIKLEDIGLSINRFISSIPESXXXXXXXXXXXXXXNQFFQELPKELEKVVQL 114
                L  + +  N    S+P S              N    E+P EL K+ +L
Sbjct:   150 LQNLNRLQVDENNITGSVPFSFGNLRSIKHLHLNNNTISGEIPVELSKLPKL 201

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 37/112 (33%), Positives = 51/112 (45%)

Query:     3 NSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISS 62
             N  G+IP  +G  SHL   +L FN    EIP  +G LN L  LIL  N  TG +P  + +
Sbjct:   121 NLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGN 180

Query:    63 FIKLEDIGLSINRFISSIPESXXXXXXXXXXXXXXNQFFQELPKELEKVVQL 114
               +L ++ L  NR +  IP+S              N    E+P  L  +  L
Sbjct:   181 LSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNL 232

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	116
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.4 bits (175), Expect = 1e-15
 Identities = 44/113 (38%), Positives = 63/113 (55%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           NN +G+IP EIG  + L+  DL++N+L   IP+ LG L +L  L L  N+ +G +PP I 
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF 281

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
           S  KL  + LS N     IPE + +L  L  L L  N F  ++P  L  + +L
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRL 334

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 69.5 bits (170), Expect = 4e-15
 Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 3/113 (2%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N   G IP E+G+   L    L +N+L  EIP ++G L SL  L L +N  TG +P  + 
Sbjct: 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
           +   L+ + L  N+    IP S+  L KL  LDLS N    E+P   E V+QL
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP---ELVIQL 307

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.0 bits (166), Expect = 1e-14
 Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 3/116 (2%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N   G IP  +   + L    L  N L  +IP +LG++ SL  + L +N  +G +P EI 
Sbjct: 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG 233

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKE---LEKVVQL 114
               L  + L  N     IP SLG L  L YL L +N+    +P     L+K++ L
Sbjct: 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.6 bits (160), Expect = 1e-13
 Identities = 41/107 (38%), Positives = 53/107 (49%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N  +G+IP +IG  S L   DL  N L  +IPN L  L SL  L L  NQ  G++P E+ 
Sbjct: 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG 209

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKEL 108
               L+ I L  N     IP  +G L  L++LDL  N     +P  L
Sbjct: 210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 63.7 bits (155), Expect = 5e-13
 Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 2/114 (1%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           NN TG IP   G   +L   DL  N L  EIPND+G  +SL  L L  N   G++P  ++
Sbjct: 128 NNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115
           +   LE + L+ N+ +  IP  LG++  L ++ L  N    E+P E+  +  L+
Sbjct: 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 43/113 (38%), Positives = 57/113 (50%), Gaps = 1/113 (0%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N   G +P   G S  L   DL  N     +P  LG L+ L +L L  N+ +G +P E+S
Sbjct: 462 NKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS 520

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
           S  KL  + LS N+    IP S  ++  L  LDLS+NQ   E+PK L  V  L
Sbjct: 521 SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL 573

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.0 bits (148), Expect = 4e-12
 Identities = 42/110 (38%), Positives = 51/110 (46%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           NN TG IP  +     L    L  N    EIP +LGK N+LT L L  N  TG +P  + 
Sbjct: 318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKV 111
           S   L  + L  N     IP+SLG    L  + L  N F  ELP E  K+
Sbjct: 378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.9 bits (145), Expect = 9e-12
 Identities = 34/99 (34%), Positives = 50/99 (50%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N  +G+IP  +GK ++L   DL  N+L  EIP  L    +L KLIL  N   G +P  + 
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100
           +   L  + L  N F   +P    KL  +++LD+S N  
Sbjct: 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL 440

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.9 bits (145), Expect = 1e-11
 Identities = 41/107 (38%), Positives = 58/107 (54%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N  +G IP  I     L + DL  N L  EIP  + +L +L  L L  N FTG++P  ++
Sbjct: 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKEL 108
           S  +L+ + L  N+F   IP++LGK   L  LDLS N    E+P+ L
Sbjct: 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 1e-11
 Identities = 33/77 (42%), Positives = 42/77 (54%)

Query: 32  IPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH 91
           IPND+ KL  L  + L  N   G +PP + S   LE + LS N F  SIPESLG+L  L 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 92  YLDLSKNQFFQELPKEL 108
            L+L+ N     +P  L
Sbjct: 494 ILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.6 bits (139), Expect = 6e-11
 Identities = 36/104 (34%), Positives = 51/104 (49%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           NN TG+IP  +  S +L    L  N L  EIP  LG   SL ++ L+ N F+G LP E +
Sbjct: 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELP 105
               +  + +S N     I      +  L  L L++N+FF  LP
Sbjct: 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.2 bits (138), Expect = 8e-11
 Identities = 34/104 (32%), Positives = 51/104 (49%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N  +G +P ++G  S L    L  N L  EIP++L     L  L L  NQ +G++P   S
Sbjct: 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELP 105
               L  + LS N+    IP++LG +  L  +++S N     LP
Sbjct: 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.8 bits (137), Expect = 1e-10
 Identities = 39/109 (35%), Positives = 50/109 (45%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           NN TG IP  +G   +L    L  N L   IP  +  L  L  L L  N  +G +P  + 
Sbjct: 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEK 110
               LE + L  N F   IP +L  L +L  L L  N+F  E+PK L K
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 22/56 (39%), Positives = 30/56 (53%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLP 57
           N+  G+IP  +G  + L   DL +N     IP  LG+L SL  L L  N  +GR+P
Sbjct: 452 NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 7e-07
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 54  GRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQ 113
           G +P +IS    L+ I LS N    +IP SLG +  L  LDLS N F   +P+ L ++  
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 114 L 114
           L
Sbjct: 492 L 492

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 34/107 (31%), Positives = 48/107 (44%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N+ +G+IP  + +  +L    L  N+   +IP  L  L  L  L L  N+F+G +P  + 
Sbjct: 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKEL 108
               L  + LS N     IPE L     L  L L  N    E+PK L
Sbjct: 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 20/57 (35%), Positives = 27/57 (47%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP 58
           N  +G IP    +   L   DL  N L  EIP +LG + SL ++ +  N   G LP 
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 41/104 (39%), Positives = 51/104 (49%), Gaps = 4/104 (3%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
            N   D+P EI   S L   DL  N + +E+ + L  L +L+ L L  N+    LP  I 
Sbjct: 195 GNKISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLE-DLPESIG 252

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELP 105
           +   LE + LS N  ISSI  SLG L  L  LDLS N     LP
Sbjct: 253 NLSNLETLDLS-NNQISSIS-SLGSLTNLRELDLSGNSLSNALP 294

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	116
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.7
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.68
PLN03150	623	hypothetical protein; Provisional	99.56
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.53
PLN03150	623	hypothetical protein; Provisional	99.5
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.44
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.34
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.27
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.24
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.22
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.21
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.13
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.12
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.08
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.02
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.99
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.88
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.86
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.81
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.78
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.73
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.69
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.69
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.68
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.66
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.65
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.62
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.59
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.55
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.46
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.46
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.45
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.44
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.42
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.39
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.38
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.38
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.36
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.36
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.05
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.93
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.86
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.68
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.57
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.56
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.45
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.43
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.41
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.37
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.35
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.32
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.32
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.17
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.79
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.62
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.62
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.61
PRK15386	426	type III secretion protein GogB; Provisional	96.42
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.34
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.28
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.22
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.03
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.95
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.76
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.39
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.24
smart00370	26	LRR Leucine-rich repeats, outliers.	95.24
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.27
PRK15386	426	type III secretion protein GogB; Provisional	94.18
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	92.27
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	91.04
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	91.02
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.37
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.2
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	88.99
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	88.28
KOG1947	482	consensus Leucine rich repeat proteins, some prote	80.08

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.70  E-value=5e-17  Score=115.71  Aligned_cols=114  Identities=37%  Similarity=0.496  Sum_probs=66.8

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+++++++|.+.+.+|..+..+.+|+.+++++|.+.+.+|
T Consensus       150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  229 (968)
T PLN00113        150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP  229 (968)
T ss_pred             CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC
Confidence            34444555556666666666666666555556666666666666666666555555555555666666666665555555


Q ss_pred             HHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           82 ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      ..+..+++|++|++++|.+.+.+|..++.++.|+
T Consensus       230 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  263 (968)
T PLN00113        230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ  263 (968)
T ss_pred             hhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence            5555555666666666655555555555555443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.68  E-value=2e-16  Score=112.64  Aligned_cols=113  Identities=32%  Similarity=0.541  Sum_probs=63.9

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |.+.+.+|..+..+++|++|++++|.+.+..|..+..+.+|+.+++.+|.+.+.+|..+..+++|+.|++++|.+.+.+|
T Consensus       174 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  253 (968)
T PLN00113        174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP  253 (968)
T ss_pred             CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC
Confidence            34445555556666666666666666555555555556666666666555555555555555555555555555555555


Q ss_pred             HHHhcccCCCEEecccCccccccchHHhhhcCC
Q 035618           82 ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L  114 (116)
                      ..+..+++|+.|++++|.+.+.+|..+..+++|
T Consensus       254 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  286 (968)
T PLN00113        254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL  286 (968)
T ss_pred             hhHhCCCCCCEEECcCCeeeccCchhHhhccCc
Confidence            555555555555555555555555555444444

>PLN03150 hypothetical protein; Provisional

Probab=99.56  E-value=1.6e-14  Score=99.05  Aligned_cols=95  Identities=37%  Similarity=0.518  Sum_probs=85.1

Q ss_pred             ccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecc
Q 035618           17 HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLS   96 (116)
Q Consensus        17 ~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~   96 (116)
                      .++.|++++|.+.+.+|..+..+++|+.+++++|.+.+.+|..+..+++|+.|++++|++.+.+|+.+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37788899999988899999999999999999999988899889999999999999999999999999999999999999


Q ss_pred             cCccccccchHHhhh
Q 035618           97 KNQFFQELPKELEKV  111 (116)
Q Consensus        97 ~n~l~~~~p~~~~~l  111 (116)
                      +|.+++.+|..++.+
T Consensus       499 ~N~l~g~iP~~l~~~  513 (623)
T PLN03150        499 GNSLSGRVPAALGGR  513 (623)
T ss_pred             CCcccccCChHHhhc
Confidence            999988999877653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.53  E-value=2.5e-16  Score=91.25  Aligned_cols=105  Identities=28%  Similarity=0.421  Sum_probs=72.8

Q ss_pred             ccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeecc-CCcHH
Q 035618            5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFIS-SIPES   83 (116)
Q Consensus         5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~   83 (116)
                      ...+|+.+..+.+|+.|++.+|++ ..+|.+++.++.|+.+++..|++. ..|.+|+.++.|..+++..|.+.. .+|..
T Consensus        45 l~~vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgn  122 (264)
T KOG0617|consen   45 LTVVPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGN  122 (264)
T ss_pred             eeecCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcc
Confidence            456777888888888888888888 778888888888888888888887 788888888888888888776542 34444


Q ss_pred             HhcccCCCEEecccCccccccchHHhhhc
Q 035618           84 LGKLLKLHYLDLSKNQFFQELPKELEKVV  112 (116)
Q Consensus        84 ~~~~~~l~~l~l~~n~l~~~~p~~~~~l~  112 (116)
                      |..+..|+.+++++|.+ ..+|..+++++
T Consensus       123 ff~m~tlralyl~dndf-e~lp~dvg~lt  150 (264)
T KOG0617|consen  123 FFYMTTLRALYLGDNDF-EILPPDVGKLT  150 (264)
T ss_pred             hhHHHHHHHHHhcCCCc-ccCChhhhhhc
Confidence            44444444444444444 33444444443

>PLN03150 hypothetical protein; Provisional

Probab=99.50  E-value=9.6e-14  Score=95.30  Aligned_cols=104  Identities=29%  Similarity=0.467  Sum_probs=92.1

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|+.+..+++|+.|++++|.+.+.+|
T Consensus       428 n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP  507 (623)
T PLN03150        428 QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP  507 (623)
T ss_pred             CCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC
Confidence            56678899999999999999999999989999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcc-cCCCEEecccCccccccc
Q 035618           82 ESLGKL-LKLHYLDLSKNQFFQELP  105 (116)
Q Consensus        82 ~~~~~~-~~l~~l~l~~n~l~~~~p  105 (116)
                      ..+... .++..+++.+|......|
T Consensus       508 ~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        508 AALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             hHHhhccccCceEEecCCccccCCC
Confidence            887753 466788888887544433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.44  E-value=4.8e-15  Score=86.03  Aligned_cols=111  Identities=29%  Similarity=0.485  Sum_probs=78.6

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCccee-cCchhhhccCCCCeEEeeceeeccCC
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTG-RLPPEISSFIKLEDIGLSINRFISSI   80 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~   80 (116)
                      |+-+.++|.++..++.|+.|++..|++ ..+|..|+.++.|+++|+.+|.+.. .+|..|.-+..|+.+.++.|.+. -+
T Consensus        65 nnqie~lp~~issl~klr~lnvgmnrl-~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~l  142 (264)
T KOG0617|consen   65 NNQIEELPTSISSLPKLRILNVGMNRL-NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-IL  142 (264)
T ss_pred             cchhhhcChhhhhchhhhheecchhhh-hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cC
Confidence            455778899999999999999999988 7788889999999999998887753 34555555555666666666553 44


Q ss_pred             cHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           81 PESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      |..++.+++|+++.+.+|.+ -.+|++++.+++|+
T Consensus       143 p~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lr  176 (264)
T KOG0617|consen  143 PPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLR  176 (264)
T ss_pred             ChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHH
Confidence            55566666666666666666 45566666655543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.34  E-value=2e-13  Score=88.02  Aligned_cols=98  Identities=31%  Similarity=0.487  Sum_probs=57.5

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcce-----------------------ecCch
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFT-----------------------GRLPP   58 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~-----------------------~~~~~   58 (116)
                      |+..+-+|..++.+++|..|++++|.+ -.+|..++.+..|+.++++.|++.                       ..-++
T Consensus       421 nn~isfv~~~l~~l~kLt~L~L~NN~L-n~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~  499 (565)
T KOG0472|consen  421 NNKISFVPLELSQLQKLTFLDLSNNLL-NDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPS  499 (565)
T ss_pred             cCccccchHHHHhhhcceeeecccchh-hhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChH
Confidence            344455555566666666666666655 455655656656666666655544                       22233


Q ss_pred             hhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccCccc
Q 035618           59 EISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFF  101 (116)
Q Consensus        59 ~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l~  101 (116)
                      +++.+.+|+.+++..|.+. .+|..+++|.+++++++.||.++
T Consensus       500 ~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  500 GLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            4556666666666666653 45666666666666666666663

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.27  E-value=1.3e-12  Score=87.80  Aligned_cols=99  Identities=25%  Similarity=0.146  Sum_probs=53.1

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |++...-+..|..+..++.|++..|+++..-..++..++.|+.+++++|.+....+++|..++.|++|+++.|+++..-+
T Consensus       255 N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~  334 (873)
T KOG4194|consen  255 NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE  334 (873)
T ss_pred             cCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence            34444444555556666666666666544444445555666666666666554445555555666666666665554434


Q ss_pred             HHHhcccCCCEEecccCcc
Q 035618           82 ESLGKLLKLHYLDLSKNQF  100 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l  100 (116)
                      +.|..+..|+.|.+++|++
T Consensus       335 ~sf~~L~~Le~LnLs~Nsi  353 (873)
T KOG4194|consen  335 GSFRVLSQLEELNLSHNSI  353 (873)
T ss_pred             hHHHHHHHhhhhcccccch
Confidence            4444444444444444444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.24  E-value=7.8e-13  Score=88.79  Aligned_cols=106  Identities=21%  Similarity=0.243  Sum_probs=56.7

Q ss_pred             cCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch-hhhccCCCCeEEeeceeeccCCc---HH
Q 035618            8 IPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSINRFISSIP---ES   83 (116)
Q Consensus         8 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~---~~   83 (116)
                      -++.+...++|.+|++++|.++...+.+|..+..|+.++++.|++. .+.+ .|..+++|..|++++|.+.|.+-   ..
T Consensus       309 h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~  387 (873)
T KOG4194|consen  309 HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA  387 (873)
T ss_pred             ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence            3344444444555555555554444444444555555555555554 2322 34555566666666666655432   23


Q ss_pred             HhcccCCCEEecccCccccccc-hHHhhhcCCC
Q 035618           84 LGKLLKLHYLDLSKNQFFQELP-KELEKVVQLS  115 (116)
Q Consensus        84 ~~~~~~l~~l~l~~n~l~~~~p-~~~~~l~~L~  115 (116)
                      |..+++|+.|.+.||++ +.+| ++|.++..|+
T Consensus       388 f~gl~~LrkL~l~gNql-k~I~krAfsgl~~LE  419 (873)
T KOG4194|consen  388 FNGLPSLRKLRLTGNQL-KSIPKRAFSGLEALE  419 (873)
T ss_pred             hccchhhhheeecCcee-eecchhhhccCcccc
Confidence            56667777777777777 4444 3566666654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.22  E-value=7.8e-13  Score=89.86  Aligned_cols=107  Identities=31%  Similarity=0.427  Sum_probs=91.1

Q ss_pred             cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHh
Q 035618            6 GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLG   85 (116)
Q Consensus         6 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~   85 (116)
                      .-+|.++..+.+|..++++.|.+ ...|+.+.++.+|+.+++++|.++ ++......+.++..|++++|+++ .+|+.++
T Consensus       212 ~N~Ptsld~l~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avc  288 (1255)
T KOG0444|consen  212 DNIPTSLDDLHNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVC  288 (1255)
T ss_pred             hcCCCchhhhhhhhhccccccCC-CcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHh
Confidence            34788888999999999999998 778999999999999999999998 67767778888999999999985 6789999


Q ss_pred             cccCCCEEecccCcccc-ccchHHhhhcCCC
Q 035618           86 KLLKLHYLDLSKNQFFQ-ELPKELEKVVQLS  115 (116)
Q Consensus        86 ~~~~l~~l~l~~n~l~~-~~p~~~~~l~~L~  115 (116)
                      .++.|+.|++.+|.+.- -+|..++++.+|+
T Consensus       289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le  319 (1255)
T KOG0444|consen  289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLE  319 (1255)
T ss_pred             hhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence            99999999998888743 3788888887765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.21  E-value=3.8e-12  Score=82.27  Aligned_cols=75  Identities=31%  Similarity=0.519  Sum_probs=63.9

Q ss_pred             CCccccccCcCccCCcccceeeccccccccccc-----------------------h-hhcCCCCCCeEecccCcceecC
Q 035618            1 MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIP-----------------------N-DLGKLNSLTKLILKWNQFTGRL   56 (116)
Q Consensus         1 ~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~-----------------------~-~~~~l~~l~~l~l~~~~~~~~~   56 (116)
                      +|++.-.+|..++.+..|+.++++.|++ ...|                       + .+..|.+|.++|+.+|.+. .+
T Consensus       443 ~NN~Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~I  520 (565)
T KOG0472|consen  443 SNNLLNDLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QI  520 (565)
T ss_pred             ccchhhhcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hC
Confidence            4777888999999999999999998875 3333                       2 3667888999999999999 89


Q ss_pred             chhhhccCCCCeEEeeceeec
Q 035618           57 PPEISSFIKLEDIGLSINRFI   77 (116)
Q Consensus        57 ~~~~~~~~~L~~l~l~~n~~~   77 (116)
                      |..+++|.+++++.+.+|++.
T Consensus       521 Pp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  521 PPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ChhhccccceeEEEecCCccC
Confidence            999999999999999999984

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.13  E-value=1.3e-11  Score=84.13  Aligned_cols=97  Identities=30%  Similarity=0.417  Sum_probs=74.8

Q ss_pred             Cccccc-cCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchh-hhccCCCCeEEeeceeeccC
Q 035618            2 NNSTGD-IPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE-ISSFIKLEDIGLSINRFISS   79 (116)
Q Consensus         2 n~~~~~-~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~   79 (116)
                      |++... +|..+.++..|+.|+++.|++ ...|..+....++-++++++|++. .+|.. +.++.-|..|+++.|++. .
T Consensus        88 N~LKnsGiP~diF~l~dLt~lDLShNqL-~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~  164 (1255)
T KOG0444|consen   88 NNLKNSGIPTDIFRLKDLTILDLSHNQL-REVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-M  164 (1255)
T ss_pred             cccccCCCCchhcccccceeeecchhhh-hhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-h
Confidence            444433 777788888888888888887 777877777778888888888887 77764 567777888888888874 5


Q ss_pred             CcHHHhcccCCCEEecccCccc
Q 035618           80 IPESLGKLLKLHYLDLSKNQFF  101 (116)
Q Consensus        80 ~~~~~~~~~~l~~l~l~~n~l~  101 (116)
                      +|..+.++..|++|.+++|.+.
T Consensus       165 LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  165 LPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             cCHHHHHHhhhhhhhcCCChhh
Confidence            6777788888888888888763

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.12  E-value=5.7e-11  Score=58.29  Aligned_cols=58  Identities=38%  Similarity=0.558  Sum_probs=28.5

Q ss_pred             CCCeEecccCcceecCc-hhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccCc
Q 035618           41 SLTKLILKWNQFTGRLP-PEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQ   99 (116)
Q Consensus        41 ~l~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~   99 (116)
                      +|+.+++++|.+. .+| ..+..+++|+++++++|.+...-+..|.++++|+.+++++|+
T Consensus         2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            3444555555444 222 234445555555555555543333445555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.08  E-value=1.2e-10  Score=57.18  Aligned_cols=61  Identities=30%  Similarity=0.349  Sum_probs=51.8

Q ss_pred             cccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceee
Q 035618           16 SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRF   76 (116)
Q Consensus        16 ~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~   76 (116)
                      ++|+.|++++|++....+..|..+++|+++++++|.+...-+..|..+++|+.+++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999999655556788899999999999999854456789999999999998864

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.02  E-value=1.3e-09  Score=64.03  Aligned_cols=101  Identities=25%  Similarity=0.322  Sum_probs=43.9

Q ss_pred             Ccc-CCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhh-hccCCCCeEEeeceeeccC-CcHHHhcc
Q 035618           11 EIG-KSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISS-IPESLGKL   87 (116)
Q Consensus        11 ~~~-~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~n~~~~~-~~~~~~~~   87 (116)
                      .+. .+.+|+.|++++|.+. .++ .+..++.|+.+++++|++. .+.+.+ ..+++|+.|.+++|++... .-..+..+
T Consensus        36 ~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l  112 (175)
T PF14580_consen   36 NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSL  112 (175)
T ss_dssp             S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-
T ss_pred             chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcC
Confidence            344 4678888999999884 343 4677888999999999988 565554 4678899999998887531 11346678


Q ss_pred             cCCCEEecccCccccccch----HHhhhcCCC
Q 035618           88 LKLHYLDLSKNQFFQELPK----ELEKVVQLS  115 (116)
Q Consensus        88 ~~l~~l~l~~n~l~~~~p~----~~~~l~~L~  115 (116)
                      ++|+.+++.+|++... +.    .+..+|+|+
T Consensus       113 ~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk  143 (175)
T PF14580_consen  113 PKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLK  143 (175)
T ss_dssp             TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-S
T ss_pred             CCcceeeccCCcccch-hhHHHHHHHHcChhh
Confidence            8899999999988433 32    355666654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.99  E-value=8.5e-11  Score=82.27  Aligned_cols=97  Identities=30%  Similarity=0.379  Sum_probs=66.2

Q ss_pred             CCccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC
Q 035618            1 MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI   80 (116)
Q Consensus         1 ~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~   80 (116)
                      +|.+.+..-+.+..+++|+.|++++|++.......+.++..|+.+++++|.++ .+|+.+..+.+|++|...+|++. ..
T Consensus       368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~f  445 (1081)
T KOG0618|consen  368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SF  445 (1081)
T ss_pred             cCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ec
Confidence            35666666667778888888888888884444455667888888888888887 67776666666666666666653 33


Q ss_pred             cHHHhcccCCCEEecccCcc
Q 035618           81 PESLGKLLKLHYLDLSKNQF  100 (116)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l  100 (116)
                      | .+..++.|+.+|++.|.+
T Consensus       446 P-e~~~l~qL~~lDlS~N~L  464 (1081)
T KOG0618|consen  446 P-ELAQLPQLKVLDLSCNNL  464 (1081)
T ss_pred             h-hhhhcCcceEEecccchh
Confidence            4 455555666666666655

>PLN03210 Resistant to P

Probab=98.88  E-value=7e-09  Score=76.01  Aligned_cols=105  Identities=20%  Similarity=0.277  Sum_probs=54.4

Q ss_pred             ccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHH
Q 035618            5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESL   84 (116)
Q Consensus         5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~   84 (116)
                      .+.+|..+..+++|+.|++++|...+.+|... .+++|+.+++++|.....+|..   ..+++.|++++|.+. .+|..+
T Consensus       791 l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si  865 (1153)
T PLN03210        791 LVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWI  865 (1153)
T ss_pred             ccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHH
Confidence            33455555555556666655554334444433 4455555555554332233322   134556666666553 456666


Q ss_pred             hcccCCCEEecccCccccccchHHhhhcCC
Q 035618           85 GKLLKLHYLDLSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        85 ~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L  114 (116)
                      ..+++|+.+++.+|.-...+|..+..++.|
T Consensus       866 ~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L  895 (1153)
T PLN03210        866 EKFSNLSFLDMNGCNNLQRVSLNISKLKHL  895 (1153)
T ss_pred             hcCCCCCEEECCCCCCcCccCcccccccCC
Confidence            667777777776644334455544444443

syringae 6; Provisional

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.86  E-value=4e-09  Score=62.03  Aligned_cols=97  Identities=33%  Similarity=0.440  Sum_probs=32.9

Q ss_pred             cCCcccceeeccccccccccchhhc-CCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHH-hcccCC
Q 035618           13 GKSSHLHAFDLLFNHLFVEIPNDLG-KLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESL-GKLLKL   90 (116)
Q Consensus        13 ~~l~~L~~l~l~~n~~~~~~~~~~~-~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~~l   90 (116)
                      .+...++.|++++|.++. +. .+. .+.+|+.+++++|.+. .+ +.+..++.|+.|++++|.++. +.+.+ ..+++|
T Consensus        16 ~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L   90 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNL   90 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred             cccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence            445578999999999944 33 455 5789999999999998 44 357788999999999999864 54444 468999


Q ss_pred             CEEecccCccccccc--hHHhhhcCCC
Q 035618           91 HYLDLSKNQFFQELP--KELEKVVQLS  115 (116)
Q Consensus        91 ~~l~l~~n~l~~~~p--~~~~~l~~L~  115 (116)
                      +.|++++|.+ ..+-  ..+..++.|+
T Consensus        91 ~~L~L~~N~I-~~l~~l~~L~~l~~L~  116 (175)
T PF14580_consen   91 QELYLSNNKI-SDLNELEPLSSLPKLR  116 (175)
T ss_dssp             -EEE-TTS----SCCCCGGGGG-TT--
T ss_pred             CEEECcCCcC-CChHHhHHHHcCCCcc
Confidence            9999999999 3332  2355555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.81  E-value=1.3e-09  Score=73.29  Aligned_cols=104  Identities=31%  Similarity=0.486  Sum_probs=86.3

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |+-.+.+|..++.+..|..++.+.|.+ ..+|..+..+.+|+.+.+..|++. .+|..+..++ |..||++.|++. .+|
T Consensus       152 NNkl~~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iP  227 (722)
T KOG0532|consen  152 NNKLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLP  227 (722)
T ss_pred             cCccccCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecc
Confidence            444677888888888999999999988 677888888999999999999888 7888877444 888999999985 788


Q ss_pred             HHHhcccCCCEEecccCccccccchHHhh
Q 035618           82 ESLGKLLKLHYLDLSKNQFFQELPKELEK  110 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~  110 (116)
                      -.|.+|..|+.+-|.+|.+ ..-|..++.
T Consensus       228 v~fr~m~~Lq~l~LenNPL-qSPPAqIC~  255 (722)
T KOG0532|consen  228 VDFRKMRHLQVLQLENNPL-QSPPAQICE  255 (722)
T ss_pred             hhhhhhhhheeeeeccCCC-CCChHHHHh
Confidence            8899999999999999999 555666664

>PLN03210 Resistant to P

Probab=98.78  E-value=1.8e-08  Score=73.87  Aligned_cols=90  Identities=28%  Similarity=0.282  Sum_probs=45.1

Q ss_pred             cCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcc
Q 035618            8 IPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKL   87 (116)
Q Consensus         8 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~   87 (116)
                      ++..+..+++|+.++++++...+.+| .+..+++|+.+++.+|.....+|..+..+.+|+.|++.+|.....+|..+ .+
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            34444455555555555544324444 24455556666665554333555555555666666665543333444332 34


Q ss_pred             cCCCEEecccCc
Q 035618           88 LKLHYLDLSKNQ   99 (116)
Q Consensus        88 ~~l~~l~l~~n~   99 (116)
                      ++|+.|++++|.
T Consensus       704 ~sL~~L~Lsgc~  715 (1153)
T PLN03210        704 KSLYRLNLSGCS  715 (1153)
T ss_pred             CCCCEEeCCCCC
Confidence            444555554443

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.73  E-value=2.1e-09  Score=75.58  Aligned_cols=91  Identities=31%  Similarity=0.478  Sum_probs=75.6

Q ss_pred             cccCc-CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccC-CcHH
Q 035618            6 GDIPC-EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISS-IPES   83 (116)
Q Consensus         6 ~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~   83 (116)
                      +.+|. .+.++..|+.|++++|++ ..+|..+..++.|+++....|++. .+| .+.++++|+.+|++.|.+... +|..
T Consensus       396 ~~fpas~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~  472 (1081)
T KOG0618|consen  396 NSFPASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA  472 (1081)
T ss_pred             ccCCHHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh
Confidence            44444 477899999999999999 778899999999999999999998 788 778999999999999998643 3332


Q ss_pred             HhcccCCCEEecccCcc
Q 035618           84 LGKLLKLHYLDLSKNQF  100 (116)
Q Consensus        84 ~~~~~~l~~l~l~~n~l  100 (116)
                      . ..++|++||++||.-
T Consensus       473 ~-p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  473 L-PSPNLKYLDLSGNTR  488 (1081)
T ss_pred             C-CCcccceeeccCCcc
Confidence            2 227999999999984

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.72  E-value=3.8e-09  Score=66.71  Aligned_cols=91  Identities=22%  Similarity=0.234  Sum_probs=63.2

Q ss_pred             cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHh
Q 035618            6 GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLG   85 (116)
Q Consensus         6 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~   85 (116)
                      |.+-.....|..|+.+|+++|.+ ..+..+..-++.++.++++.|++. .+ +.+..+++|+.|++++|.++ .+..+-.
T Consensus       274 G~~~~~~dTWq~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~  349 (490)
T KOG1259|consen  274 GSALVSADTWQELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHL  349 (490)
T ss_pred             CceEEecchHhhhhhccccccch-hhhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHh
Confidence            33444566788899999999988 667777777889999999999887 33 33778888999999888664 2223333


Q ss_pred             cccCCCEEecccCcc
Q 035618           86 KLLKLHYLDLSKNQF  100 (116)
Q Consensus        86 ~~~~l~~l~l~~n~l  100 (116)
                      .+.++++|.+++|.+
T Consensus       350 KLGNIKtL~La~N~i  364 (490)
T KOG1259|consen  350 KLGNIKTLKLAQNKI  364 (490)
T ss_pred             hhcCEeeeehhhhhH
Confidence            444455555555544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.69  E-value=6.4e-09  Score=66.19  Aligned_cols=15  Identities=33%  Similarity=0.512  Sum_probs=7.5

Q ss_pred             cccCCCEEecccCcc
Q 035618           86 KLLKLHYLDLSKNQF  100 (116)
Q Consensus        86 ~~~~l~~l~l~~n~l  100 (116)
                      .+++|+.+++++|.+
T Consensus       219 ~~~~L~~L~ls~n~l  233 (319)
T cd00116         219 SLKSLEVLNLGDNNL  233 (319)
T ss_pred             ccCCCCEEecCCCcC
Confidence            344455555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.69  E-value=4e-08  Score=69.21  Aligned_cols=87  Identities=23%  Similarity=0.256  Sum_probs=61.9

Q ss_pred             ccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecc
Q 035618           17 HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLS   96 (116)
Q Consensus        17 ~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~   96 (116)
                      .|+.|++++|.++ .+|..   .++|+.+++++|.+. .+|...   ..|+.|++++|+++ .+|..+..+++++.++++
T Consensus       383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  453 (788)
T ss_pred             ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence            4566666666663 34432   346777777777777 566533   34667888888875 688888999999999999


Q ss_pred             cCccccccchHHhhhc
Q 035618           97 KNQFFQELPKELEKVV  112 (116)
Q Consensus        97 ~n~l~~~~p~~~~~l~  112 (116)
                      +|.+++..|..+..+.
T Consensus       454 ~N~Ls~~~~~~L~~l~  469 (788)
T PRK15387        454 GNPLSERTLQALREIT  469 (788)
T ss_pred             CCCCCchHHHHHHHHh
Confidence            9999888887775543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.68  E-value=8.4e-10  Score=71.38  Aligned_cols=97  Identities=20%  Similarity=0.148  Sum_probs=46.5

Q ss_pred             ccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeec-eeeccCCcHHHhcccCCCEEec
Q 035618           17 HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSI-NRFISSIPESLGKLLKLHYLDL   95 (116)
Q Consensus        17 ~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~-n~~~~~~~~~~~~~~~l~~l~l   95 (116)
                      ..+.+.+..|.++...+..|+.+.+|+.++++.|.+...-|++|..+.++..+.+-+ |+++......|.++.+++.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            344555555555444444455555555555555555533444555555554444333 4443322234455555554544


Q ss_pred             ccCccccccchHHhhhcC
Q 035618           96 SKNQFFQELPKELEKVVQ  113 (116)
Q Consensus        96 ~~n~l~~~~p~~~~~l~~  113 (116)
                      .-|.+.-...++|..+++
T Consensus       148 Nan~i~Cir~~al~dL~~  165 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPS  165 (498)
T ss_pred             ChhhhcchhHHHHHHhhh
Confidence            444443333344444443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.66  E-value=8.5e-09  Score=66.88  Aligned_cols=89  Identities=20%  Similarity=0.226  Sum_probs=69.7

Q ss_pred             ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH   91 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~   91 (116)
                      |.++++|+.+++++|+++..-+..|..+.+++.+.+..|++...-...|..+..|+.|++.+|+++...|.+|....+|.
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            66788888888888888777777788888888888888888733334577788888888888888877777788778888


Q ss_pred             EEecccCcc
Q 035618           92 YLDLSKNQF  100 (116)
Q Consensus        92 ~l~l~~n~l  100 (116)
                      .+.+-.|.+
T Consensus       350 ~l~l~~Np~  358 (498)
T KOG4237|consen  350 TLNLLSNPF  358 (498)
T ss_pred             eeehccCcc
Confidence            888877764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.65  E-value=8.8e-09  Score=65.56  Aligned_cols=39  Identities=31%  Similarity=0.185  Sum_probs=16.1

Q ss_pred             CCcccceeeccccccccccchhhcCCCC---CCeEecccCcc
Q 035618           14 KSSHLHAFDLLFNHLFVEIPNDLGKLNS---LTKLILKWNQF   52 (116)
Q Consensus        14 ~l~~L~~l~l~~n~~~~~~~~~~~~l~~---l~~l~l~~~~~   52 (116)
                      .+++|+.|++++|.+....+..+..+..   |+.+++++|.+
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~  120 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL  120 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCcc
Confidence            3444455555444443223333322222   44444444443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.62  E-value=4.1e-08  Score=70.13  Aligned_cols=87  Identities=26%  Similarity=0.353  Sum_probs=62.5

Q ss_pred             ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH   91 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~   91 (116)
                      |..++.|+.||+++|.-.+.+|..++.+-+|++|++++..+. .+|.++..+..|.+|++..+.-...+|.....+.+|+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence            556777888888877766777777777778888888777777 7777777777777777776654444455556677777


Q ss_pred             EEecccCc
Q 035618           92 YLDLSKNQ   99 (116)
Q Consensus        92 ~l~l~~n~   99 (116)
                      ++.+....
T Consensus       646 ~L~l~~s~  653 (889)
T KOG4658|consen  646 VLRLPRSA  653 (889)
T ss_pred             EEEeeccc
Confidence            77776543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.59  E-value=8.4e-09  Score=69.56  Aligned_cols=107  Identities=34%  Similarity=0.449  Sum_probs=72.4

Q ss_pred             ccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeec-------
Q 035618            5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFI-------   77 (116)
Q Consensus         5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~-------   77 (116)
                      +..+|..+..+..|++++++.|++ ..+|..++.++ |+.+-+++|+++ .+|+.++....|..++.+.|.+.       
T Consensus       110 ~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~  186 (722)
T KOG0532|consen  110 IRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLG  186 (722)
T ss_pred             ceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhh
Confidence            445677778888888888888877 55666666555 566666666666 55655555555555555555432       


Q ss_pred             ---------------cCCcHHHhcccCCCEEecccCccccccchHHhhhcCCCC
Q 035618           78 ---------------SSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE  116 (116)
Q Consensus        78 ---------------~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~~  116 (116)
                                     -.+|+.++.+ .|..||++.|++ ..+|-.|.+|+.|++
T Consensus       187 ~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNki-s~iPv~fr~m~~Lq~  238 (722)
T KOG0532|consen  187 YLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKI-SYLPVDFRKMRHLQV  238 (722)
T ss_pred             hHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCce-eecchhhhhhhhhee
Confidence                           1345555533 478999999999 788999999988763

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.55  E-value=1.4e-08  Score=64.27  Aligned_cols=70  Identities=17%  Similarity=0.116  Sum_probs=44.7

Q ss_pred             cccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceee
Q 035618            4 STGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRF   76 (116)
Q Consensus         4 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~   76 (116)
                      .+..++.+..-++.++.|+++.|++...  ..+..+++|+.+|+++|.+. .+..+...+-+.+.|.++.|.+
T Consensus       295 ~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~i  364 (490)
T KOG1259|consen  295 LITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKI  364 (490)
T ss_pred             chhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhH
Confidence            3456666666778888888888887432  23666778888888888776 4444444444455555555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.46  E-value=2.4e-07  Score=42.28  Aligned_cols=37  Identities=30%  Similarity=0.495  Sum_probs=23.5

Q ss_pred             cccceeeccccccccccchhhcCCCCCCeEecccCcce
Q 035618           16 SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFT   53 (116)
Q Consensus        16 ~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~   53 (116)
                      ++|++|++++|.+ ..+|+.+..+++|+.+++++|.++
T Consensus         1 ~~L~~L~l~~N~i-~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQI-TDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCC-cccCchHhCCCCCCEEEecCCCCC
Confidence            3566777777777 345656677777777777777665

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.46  E-value=1.8e-07  Score=66.97  Aligned_cols=98  Identities=30%  Similarity=0.405  Sum_probs=74.4

Q ss_pred             cccceeeccccc--cccccchh-hcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCE
Q 035618           16 SHLHAFDLLFNH--LFVEIPND-LGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHY   92 (116)
Q Consensus        16 ~~L~~l~l~~n~--~~~~~~~~-~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~   92 (116)
                      +.|+.|-+..|.  + ..++.. |..++.|++||+++|.-.+.+|..++.+-+|++|++.++.+. .+|..+..++.|.+
T Consensus       545 ~~L~tLll~~n~~~l-~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWL-LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CccceEEEeecchhh-hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            357777777775  3 334433 566889999999988766688888888888999998888864 78888888888899


Q ss_pred             EecccCccccccchHHhhhcCCC
Q 035618           93 LDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        93 l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      |++..+.-...+|..++.|++|+
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             eccccccccccccchhhhccccc
Confidence            98888776556666667677765

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.45  E-value=1.4e-07  Score=62.00  Aligned_cols=89  Identities=34%  Similarity=0.545  Sum_probs=48.2

Q ss_pred             CcccceeeccccccccccchhhcCCC-CCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEE
Q 035618           15 SSHLHAFDLLFNHLFVEIPNDLGKLN-SLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYL   93 (116)
Q Consensus        15 l~~L~~l~l~~n~~~~~~~~~~~~l~-~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l   93 (116)
                      ++.++.+++..|.+ ..+++....+. +|+.++++.|.+. .+|..+..++.|+.|+++.|++. .+|......+.++.+
T Consensus       115 ~~~l~~L~l~~n~i-~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L  191 (394)
T COG4886         115 LTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL  191 (394)
T ss_pred             ccceeEEecCCccc-ccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence            34555666666655 44444444442 5666666666665 45455555666666666666553 334333355555666


Q ss_pred             ecccCccccccchH
Q 035618           94 DLSKNQFFQELPKE  107 (116)
Q Consensus        94 ~l~~n~l~~~~p~~  107 (116)
                      ++++|.+ ..+|..
T Consensus       192 ~ls~N~i-~~l~~~  204 (394)
T COG4886         192 DLSGNKI-SDLPPE  204 (394)
T ss_pred             eccCCcc-ccCchh
Confidence            6666666 444543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.44  E-value=6.2e-07  Score=63.38  Aligned_cols=75  Identities=27%  Similarity=0.463  Sum_probs=37.4

Q ss_pred             ccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecc
Q 035618           17 HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLS   96 (116)
Q Consensus        17 ~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~   96 (116)
                      +|+.|++++|.+ ..+|..+.  .+|+.+++++|.+. .+|..+.  ..|+.|++++|++. .+|..+.  .+|+.|+++
T Consensus       221 nL~~L~Ls~N~L-tsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls  291 (754)
T PRK15370        221 NIKTLYANSNQL-TSIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVY  291 (754)
T ss_pred             CCCEEECCCCcc-ccCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECC
Confidence            444444444444 23333221  24555555555554 4444432  35666666666654 3454332  356666666


Q ss_pred             cCcc
Q 035618           97 KNQF  100 (116)
Q Consensus        97 ~n~l  100 (116)
                      +|.+
T Consensus       292 ~N~L  295 (754)
T PRK15370        292 DNSI  295 (754)
T ss_pred             CCcc
Confidence            6666

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.42  E-value=4.8e-08  Score=55.18  Aligned_cols=89  Identities=25%  Similarity=0.367  Sum_probs=53.3

Q ss_pred             cCCcccceeeccccccccccchhhcC-CCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618           13 GKSSHLHAFDLLFNHLFVEIPNDLGK-LNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH   91 (116)
Q Consensus        13 ~~l~~L~~l~l~~n~~~~~~~~~~~~-l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~   91 (116)
                      .+..+|..+++++|.+ ...|+.|.. .+.++.+++.+|.+. .+|..+..++.|+.++++.|++. ..|..+..+.++.
T Consensus        50 ~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~  126 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD  126 (177)
T ss_pred             hCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence            3445556666666666 555555543 346666666666666 56666666666666666666654 3455555566666


Q ss_pred             EEecccCccccccc
Q 035618           92 YLDLSKNQFFQELP  105 (116)
Q Consensus        92 ~l~l~~n~l~~~~p  105 (116)
                      .|+..+|.+ .++|
T Consensus       127 ~Lds~~na~-~eid  139 (177)
T KOG4579|consen  127 MLDSPENAR-AEID  139 (177)
T ss_pred             HhcCCCCcc-ccCc
Confidence            666666665 4444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.39  E-value=2.6e-07  Score=60.73  Aligned_cols=107  Identities=33%  Similarity=0.471  Sum_probs=82.2

Q ss_pred             ccccccCcCccCCc-ccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            3 NSTGDIPCEIGKSS-HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         3 ~~~~~~~~~~~~l~-~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      +-...++.....+. +|+.+++++|.+ ..+|..+..++.|+.+++..|.+. .++...+....|..+++++|++. .+|
T Consensus       126 n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~  202 (394)
T COG4886         126 NNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLP  202 (394)
T ss_pred             cccccCccccccchhhcccccccccch-hhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCc
Confidence            33556666666674 899999999998 666666788999999999999998 77877768889999999999975 677


Q ss_pred             HHHhcccCCCEEecccCccccccchHHhhhcC
Q 035618           82 ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQ  113 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~  113 (116)
                      ........|..+.+++|.+ -..+..+.++..
T Consensus       203 ~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~  233 (394)
T COG4886         203 PEIELLSALEELDLSNNSI-IELLSSLSNLKN  233 (394)
T ss_pred             hhhhhhhhhhhhhhcCCcc-eecchhhhhccc
Confidence            7666666799999999964 333444555544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.38  E-value=5.2e-07  Score=41.18  Aligned_cols=35  Identities=37%  Similarity=0.588  Sum_probs=22.3

Q ss_pred             CCCeEEeeceeeccCCcHHHhcccCCCEEecccCcc
Q 035618           65 KLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF  100 (116)
Q Consensus        65 ~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l  100 (116)
                      +|+.|++++|+++ .+|..+..+++|+.+++++|.+
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence            4666677777665 4555566777777777777776

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.38  E-value=1.8e-06  Score=61.16  Aligned_cols=90  Identities=32%  Similarity=0.493  Sum_probs=69.6

Q ss_pred             ccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhc
Q 035618            7 DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGK   86 (116)
Q Consensus         7 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~   86 (116)
                      .+|..+.  +.++.|++++|.+ ..+|..+.  .+|+.+++++|.++ .+|..+.  ..|+.|++++|.+. .+|..+. 
T Consensus       192 sLP~~Ip--~~L~~L~Ls~N~L-tsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~-  261 (754)
T PRK15370        192 TIPACIP--EQITTLILDNNEL-KSLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP-  261 (754)
T ss_pred             cCCcccc--cCCcEEEecCCCC-CcCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh-
Confidence            4555443  4789999999998 46776654  58999999999998 7887654  47899999999986 6777654 


Q ss_pred             ccCCCEEecccCccccccchHH
Q 035618           87 LLKLHYLDLSKNQFFQELPKEL  108 (116)
Q Consensus        87 ~~~l~~l~l~~n~l~~~~p~~~  108 (116)
                       .+|+.|++++|.++ .+|..+
T Consensus       262 -s~L~~L~Ls~N~L~-~LP~~l  281 (754)
T PRK15370        262 -SALQSLDLFHNKIS-CLPENL  281 (754)
T ss_pred             -CCCCEEECcCCccC-cccccc
Confidence             57999999999994 667644

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.36  E-value=7.5e-07  Score=63.06  Aligned_cols=46  Identities=28%  Similarity=0.375  Sum_probs=27.5

Q ss_pred             CCCeEEeeceeeccCCcHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           65 KLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        65 ~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      .|+.|++++|.+. .+|..   ..+|+.|++++|.+ +.+|..++.++.|+
T Consensus       403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqL-t~LP~sl~~L~~L~  448 (788)
T PRK15387        403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQL-TRLPESLIHLSSET  448 (788)
T ss_pred             CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCcc-cccChHHhhccCCC
Confidence            4555556665554 34432   23456677777777 56777777776654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.36  E-value=6.2e-08  Score=54.72  Aligned_cols=94  Identities=28%  Similarity=0.413  Sum_probs=74.0

Q ss_pred             cccceeeccccccccccch---hhcCCCCCCeEecccCcceecCchhhhc-cCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618           16 SHLHAFDLLFNHLFVEIPN---DLGKLNSLTKLILKWNQFTGRLPPEISS-FIKLEDIGLSINRFISSIPESLGKLLKLH   91 (116)
Q Consensus        16 ~~L~~l~l~~n~~~~~~~~---~~~~l~~l~~l~l~~~~~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~l~   91 (116)
                      ..+..++++.+.+ ..+++   .+.+..+|...++++|.++ .+|..+.. .+.++.+++.+|.+. .+|..+..++.|+
T Consensus        27 kE~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr  103 (177)
T KOG4579|consen   27 KELHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR  103 (177)
T ss_pred             HHhhhcccccchh-hHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence            4566778888876 43443   3455667888899999999 78887755 447899999999984 7899999999999


Q ss_pred             EEecccCccccccchHHhhhcC
Q 035618           92 YLDLSKNQFFQELPKELEKVVQ  113 (116)
Q Consensus        92 ~l~l~~n~l~~~~p~~~~~l~~  113 (116)
                      .++++.|.+ ...|+.+..+..
T Consensus       104 ~lNl~~N~l-~~~p~vi~~L~~  124 (177)
T KOG4579|consen  104 SLNLRFNPL-NAEPRVIAPLIK  124 (177)
T ss_pred             hcccccCcc-ccchHHHHHHHh
Confidence            999999999 667887776654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.05  E-value=2.5e-07  Score=64.55  Aligned_cols=91  Identities=22%  Similarity=0.268  Sum_probs=67.1

Q ss_pred             cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchh-hhccCCCCeEEeeceeeccCCcHHH
Q 035618            6 GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE-ISSFIKLEDIGLSINRFISSIPESL   84 (116)
Q Consensus         6 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~   84 (116)
                      ..++..+.-++.++.|+++.|+++. .. .+..+++|++||+++|.+. .+|.- ...|. |..|.+++|.++. + ..+
T Consensus       177 ~~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-L-~gi  250 (1096)
T KOG1859|consen  177 VLMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-L-RGI  250 (1096)
T ss_pred             HhHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh-h-hhH
Confidence            3455666677888999999998844 33 6778889999999999888 67763 33444 8888888887643 2 346


Q ss_pred             hcccCCCEEecccCcccc
Q 035618           85 GKLLKLHYLDLSKNQFFQ  102 (116)
Q Consensus        85 ~~~~~l~~l~l~~n~l~~  102 (116)
                      .++.+|..||+++|-+.+
T Consensus       251 e~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  251 ENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             HhhhhhhccchhHhhhhc
Confidence            788888899999888733

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.93  E-value=3.2e-06  Score=56.22  Aligned_cols=87  Identities=33%  Similarity=0.397  Sum_probs=59.8

Q ss_pred             CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCC
Q 035618           11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKL   90 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l   90 (116)
                      .+..++++..+++.+|.+ ..+...+..+.+|+++++++|.+..  -..+..+..|+.|++.+|.+.. + ..+..+.+|
T Consensus        90 ~l~~~~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L  164 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFNKITK--LEGLSTLTLLKELNLSGNLISD-I-SGLESLKSL  164 (414)
T ss_pred             ccccccceeeeeccccch-hhcccchhhhhcchheecccccccc--ccchhhccchhhheeccCcchh-c-cCCccchhh
Confidence            366677888888888887 4444335678888888888888873  2234455668888888887742 2 234457778


Q ss_pred             CEEecccCcccc
Q 035618           91 HYLDLSKNQFFQ  102 (116)
Q Consensus        91 ~~l~l~~n~l~~  102 (116)
                      +.+++++|.+..
T Consensus       165 ~~l~l~~n~i~~  176 (414)
T KOG0531|consen  165 KLLDLSYNRIVD  176 (414)
T ss_pred             hcccCCcchhhh
Confidence            888888888733

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.86  E-value=1.9e-05  Score=47.45  Aligned_cols=85  Identities=29%  Similarity=0.196  Sum_probs=44.7

Q ss_pred             ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch--hhhccCCCCeEEeeceeeccCC--cH-HHhc
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP--EISSFIKLEDIGLSINRFISSI--PE-SLGK   86 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~--~~-~~~~   86 (116)
                      |..++.|.+|.+..|+++...|.--..++.++.+.+.+|.+. ++.+  .+..|+.|+.|.+-+|+....-  .. .++.
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k  138 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK  138 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEe
Confidence            455666666666666664333322223455666666666665 3332  3555666666666666543210  00 1345


Q ss_pred             ccCCCEEeccc
Q 035618           87 LLKLHYLDLSK   97 (116)
Q Consensus        87 ~~~l~~l~l~~   97 (116)
                      +++++++|+.+
T Consensus       139 lp~l~~LDF~k  149 (233)
T KOG1644|consen  139 LPSLRTLDFQK  149 (233)
T ss_pred             cCcceEeehhh
Confidence            56666666654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.68  E-value=3e-06  Score=59.42  Aligned_cols=94  Identities=28%  Similarity=0.377  Sum_probs=70.0

Q ss_pred             CcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEe
Q 035618           15 SSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLD   94 (116)
Q Consensus        15 l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~   94 (116)
                      +-.|...+.+.|++ ..+..++.-++.++.|+++.|++. . -+.+..|+.|++||++.|.+. .+|..-..-..|..|.
T Consensus       163 Wn~L~~a~fsyN~L-~~mD~SLqll~ale~LnLshNk~~-~-v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~  238 (1096)
T KOG1859|consen  163 WNKLATASFSYNRL-VLMDESLQLLPALESLNLSHNKFT-K-VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLN  238 (1096)
T ss_pred             hhhHhhhhcchhhH-HhHHHHHHHHHHhhhhccchhhhh-h-hHHHHhcccccccccccchhc-cccccchhhhhheeee
Confidence            45677788888988 777788888899999999999987 3 337888999999999999875 5554222222489999


Q ss_pred             cccCccccccchHHhhhcCC
Q 035618           95 LSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        95 l~~n~l~~~~p~~~~~l~~L  114 (116)
                      +.+|.+ ..+ ..+.++++|
T Consensus       239 lrnN~l-~tL-~gie~LksL  256 (1096)
T KOG1859|consen  239 LRNNAL-TTL-RGIENLKSL  256 (1096)
T ss_pred             ecccHH-Hhh-hhHHhhhhh
Confidence            999998 333 235555554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.57  E-value=1.6e-05  Score=52.90  Aligned_cols=87  Identities=31%  Similarity=0.391  Sum_probs=66.5

Q ss_pred             CCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEE
Q 035618           14 KSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYL   93 (116)
Q Consensus        14 ~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l   93 (116)
                      .+..+..++++.|.+. .....+..+.++..+++..|.+. .+...+..+.+|++++++.|.+...  ..+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence            4556667777888773 33344778889999999999998 5555477889999999999998644  345677779999


Q ss_pred             ecccCccccccc
Q 035618           94 DLSKNQFFQELP  105 (116)
Q Consensus        94 ~l~~n~l~~~~p  105 (116)
                      ++.+|.+ ..+.
T Consensus       146 ~l~~N~i-~~~~  156 (414)
T KOG0531|consen  146 NLSGNLI-SDIS  156 (414)
T ss_pred             eeccCcc-hhcc
Confidence            9999999 4443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=1.3e-05  Score=53.01  Aligned_cols=87  Identities=20%  Similarity=0.124  Sum_probs=48.0

Q ss_pred             ccCCcccceeeccccccccccc--hhhcCCCCCCeEecccCcceecCchh-hhccCCCCeEEeeceeeccCCcH-HHhcc
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIP--NDLGKLNSLTKLILKWNQFTGRLPPE-ISSFIKLEDIGLSINRFISSIPE-SLGKL   87 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~--~~~~~l~~l~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~-~~~~~   87 (116)
                      ...+++++.|+++.|-+....+  .-...+++|+.|+++.|++.-..... -..+++++.|.+++|.+++.-.. ....+
T Consensus       142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f  221 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF  221 (505)
T ss_pred             hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence            4557778888888876643322  12335777777777777775322221 12455667777777766543221 22344


Q ss_pred             cCCCEEecccC
Q 035618           88 LKLHYLDLSKN   98 (116)
Q Consensus        88 ~~l~~l~l~~n   98 (116)
                      +++..|++..|
T Consensus       222 Psl~~L~L~~N  232 (505)
T KOG3207|consen  222 PSLEVLYLEAN  232 (505)
T ss_pred             CcHHHhhhhcc
Confidence            45555555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.45  E-value=5.3e-05  Score=29.17  Aligned_cols=21  Identities=38%  Similarity=0.714  Sum_probs=14.5

Q ss_pred             CCCEEecccCccccccchHHhh
Q 035618           89 KLHYLDLSKNQFFQELPKELEK  110 (116)
Q Consensus        89 ~l~~l~l~~n~l~~~~p~~~~~  110 (116)
                      +|++|++++|.++ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3677888888774 67766554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.43  E-value=9.6e-06  Score=51.13  Aligned_cols=78  Identities=24%  Similarity=0.259  Sum_probs=53.9

Q ss_pred             CCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch--hhhccCCCCeEEeeceeeccCCcHH-----Hhc
Q 035618           14 KSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP--EISSFIKLEDIGLSINRFISSIPES-----LGK   86 (116)
Q Consensus        14 ~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~-----~~~   86 (116)
                      +++.|+.|.++.|++++.-|  +..+..|+.+++..|.+. .+.+  .+.++++|+.|.+..|++-+..+..     +.-
T Consensus        39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~  115 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV  115 (388)
T ss_pred             hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence            57778888888888755443  556778888888888776 3443  3567788888888888776665532     445


Q ss_pred             ccCCCEEe
Q 035618           87 LLKLHYLD   94 (116)
Q Consensus        87 ~~~l~~l~   94 (116)
                      +++|+.||
T Consensus       116 LPnLkKLD  123 (388)
T KOG2123|consen  116 LPNLKKLD  123 (388)
T ss_pred             cccchhcc
Confidence            66777665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.41  E-value=0.00014  Score=45.16  Aligned_cols=86  Identities=24%  Similarity=0.234  Sum_probs=48.9

Q ss_pred             ccCCcccceeeccccccccccchhhcCCCCCCeEecccC--cceecCchhhhccCCCCeEEeeceeecc--CCcHHHhcc
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWN--QFTGRLPPEISSFIKLEDIGLSINRFIS--SIPESLGKL   87 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~--~~~~~~~~~~~~~~~L~~l~l~~n~~~~--~~~~~~~~~   87 (116)
                      ...+..|+.+.+.+..+++.  ..+..+++|+.+.++.|  +..+.++-....+++|+++++++|++.-  .+ .....+
T Consensus        39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l  115 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKEL  115 (260)
T ss_pred             cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhh
Confidence            33445555666555554332  23456667777777777  5554444444455777777777776641  11 123455


Q ss_pred             cCCCEEecccCcc
Q 035618           88 LKLHYLDLSKNQF  100 (116)
Q Consensus        88 ~~l~~l~l~~n~l  100 (116)
                      .+|..|++.+|..
T Consensus       116 ~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen  116 ENLKSLDLFNCSV  128 (260)
T ss_pred             cchhhhhcccCCc
Confidence            6667777777665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.37  E-value=0.00016  Score=44.91  Aligned_cols=85  Identities=19%  Similarity=0.115  Sum_probs=62.4

Q ss_pred             CccCCcccceeecccc--ccccccchhhcCCCCCCeEecccCcceecCch---hhhccCCCCeEEeeceeeccCCc---H
Q 035618           11 EIGKSSHLHAFDLLFN--HLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP---EISSFIKLEDIGLSINRFISSIP---E   82 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n--~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~---~~~~~~~L~~l~l~~n~~~~~~~---~   82 (116)
                      .+..+++|+.|.++.|  ++.+.++.-...+++|+++++++|++..  ++   ....+.+|..|++..|..+..-.   .
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~  137 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREK  137 (260)
T ss_pred             cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHH
Confidence            4667889999999999  7777777666677999999999999872  33   34566778888888876654211   2


Q ss_pred             HHhcccCCCEEeccc
Q 035618           83 SLGKLLKLHYLDLSK   97 (116)
Q Consensus        83 ~~~~~~~l~~l~l~~   97 (116)
                      .|.-+++|++++-..
T Consensus       138 vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  138 VFLLLPSLKYLDGCD  152 (260)
T ss_pred             HHHHhhhhccccccc
Confidence            356677887777544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=3.9e-05  Score=50.88  Aligned_cols=88  Identities=26%  Similarity=0.211  Sum_probs=53.4

Q ss_pred             cCCcccceeeccccccccccchhh-cCCCCCCeEecccCcceecCchh-hhccCCCCeEEeeceeeccCCcHHHhcccCC
Q 035618           13 GKSSHLHAFDLLFNHLFVEIPNDL-GKLNSLTKLILKWNQFTGRLPPE-ISSFIKLEDIGLSINRFISSIPESLGKLLKL   90 (116)
Q Consensus        13 ~~l~~L~~l~l~~n~~~~~~~~~~-~~l~~l~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l   90 (116)
                      ..+++|+.|+++.|++........ ..+++++.+.++.|.+....-.. ...++.+..|.+..|.....-......++.|
T Consensus       169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L  248 (505)
T KOG3207|consen  169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL  248 (505)
T ss_pred             HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence            456788888888887643333221 13567888888888776322222 3457778888887774221111223445667


Q ss_pred             CEEecccCcc
Q 035618           91 HYLDLSKNQF  100 (116)
Q Consensus        91 ~~l~l~~n~l  100 (116)
                      +.||+++|++
T Consensus       249 ~~LdLs~N~l  258 (505)
T KOG3207|consen  249 QELDLSNNNL  258 (505)
T ss_pred             hhccccCCcc
Confidence            7888888877

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.32  E-value=5.5e-05  Score=48.83  Aligned_cols=91  Identities=21%  Similarity=0.210  Sum_probs=57.3

Q ss_pred             cCccCCcccceeeccccccccc----cchhhcCCCCCCeEecccCcceecCchhh-----hccCCCCeEEeeceeeccCC
Q 035618           10 CEIGKSSHLHAFDLLFNHLFVE----IPNDLGKLNSLTKLILKWNQFTGRLPPEI-----SSFIKLEDIGLSINRFISSI   80 (116)
Q Consensus        10 ~~~~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~l~~l~l~~~~~~~~~~~~~-----~~~~~L~~l~l~~n~~~~~~   80 (116)
                      ..+..+++|+.||+++|.++..    +...++..++|+.+++..|.+...-...+     ...+.|.++.+.+|.++..-
T Consensus       207 eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da  286 (382)
T KOG1909|consen  207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA  286 (382)
T ss_pred             HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence            3456677788888888876442    33445566777777777777764333322     12567777887777765432


Q ss_pred             c----HHHhcccCCCEEecccCcc
Q 035618           81 P----ESLGKLLKLHYLDLSKNQF  100 (116)
Q Consensus        81 ~----~~~~~~~~l~~l~l~~n~l  100 (116)
                      .    ..+...+.|..|++++|.+
T Consensus       287 ~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  287 ALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHHHhcchhhHHhcCCcccc
Confidence            1    2234566777888888877

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.32  E-value=0.00062  Score=41.16  Aligned_cols=83  Identities=28%  Similarity=0.313  Sum_probs=59.7

Q ss_pred             cccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc--HHHhcccCCCEE
Q 035618           16 SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP--ESLGKLLKLHYL   93 (116)
Q Consensus        16 ~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~--~~~~~~~~l~~l   93 (116)
                      .+...+|+++|.+ ..+ +.|..++.|.++.+.+|++....|.--..++++..|.+.+|++. .+.  +.+..++.|+.|
T Consensus        42 d~~d~iDLtdNdl-~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDL-RKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccch-hhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence            4567788888887 433 35677888999999999998433433345667889999988874 222  235678889999


Q ss_pred             ecccCccc
Q 035618           94 DLSKNQFF  101 (116)
Q Consensus        94 ~l~~n~l~  101 (116)
                      .+-+|.+.
T Consensus       119 tll~Npv~  126 (233)
T KOG1644|consen  119 TLLGNPVE  126 (233)
T ss_pred             eecCCchh
Confidence            98888873

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.17  E-value=0.0004  Score=49.24  Aligned_cols=92  Identities=17%  Similarity=0.206  Sum_probs=59.7

Q ss_pred             ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCc--hhhhccCCCCeEEeeceeeccCC--c----HH
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLP--PEISSFIKLEDIGLSINRFISSI--P----ES   83 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~--~----~~   83 (116)
                      ..++++|..||++++.++..  ..++.+.+|+.|.+.+-.+. ...  ..+.+++.|+.||++........  .    +.
T Consensus       169 c~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e-~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec  245 (699)
T KOG3665|consen  169 CASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFE-SYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC  245 (699)
T ss_pred             hhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCC-chhhHHHHhcccCCCeeeccccccccchHHHHHHHHh
Confidence            34577888888888877333  45677788887766664444 222  24567888999999876543211  1    11


Q ss_pred             HhcccCCCEEecccCccccccch
Q 035618           84 LGKLLKLHYLDLSKNQFFQELPK  106 (116)
Q Consensus        84 ~~~~~~l~~l~l~~n~l~~~~p~  106 (116)
                      ...+++|+.||.+++.+.+.+-+
T Consensus       246 ~~~LpeLrfLDcSgTdi~~~~le  268 (699)
T KOG3665|consen  246 GMVLPELRFLDCSGTDINEEILE  268 (699)
T ss_pred             cccCccccEEecCCcchhHHHHH
Confidence            23578899999998877555433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.79  E-value=0.00074  Score=47.97  Aligned_cols=59  Identities=25%  Similarity=0.279  Sum_probs=25.8

Q ss_pred             CCCCCeEecccCcceecCchhhhccCCCCeEEeeceeecc-CCcHHHhcccCCCEEecccCc
Q 035618           39 LNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFIS-SIPESLGKLLKLHYLDLSKNQ   99 (116)
Q Consensus        39 l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~l~~l~l~~n~   99 (116)
                      .++|..||+++..+. .+ .++..+++|+.|.+.+=.+.. ..-..+..+++|++||++...
T Consensus       172 FpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  172 FPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             cCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            444555555555444 11 344444444444443322211 000123455666666666544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.62  E-value=0.00063  Score=43.64  Aligned_cols=86  Identities=23%  Similarity=0.190  Sum_probs=47.1

Q ss_pred             Ccccceeeccccccccc--cchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc-HHHhcccCCC
Q 035618           15 SSHLHAFDLLFNHLFVE--IPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP-ESLGKLLKLH   91 (116)
Q Consensus        15 l~~L~~l~l~~n~~~~~--~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~l~   91 (116)
                      .+.++.+++.+|.++.+  +..-+..+|++++++++.|.+...+...-....+|+.+.+.++.+.+.-. .....++.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            35566777777776432  11223457777777777777653332221344566666666655443322 2344555666


Q ss_pred             EEecccCcc
Q 035618           92 YLDLSKNQF  100 (116)
Q Consensus        92 ~l~l~~n~l  100 (116)
                      .++++.|++
T Consensus       150 elHmS~N~~  158 (418)
T KOG2982|consen  150 ELHMSDNSL  158 (418)
T ss_pred             hhhhccchh
Confidence            666666643

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.62  E-value=0.0075  Score=33.39  Aligned_cols=98  Identities=13%  Similarity=0.166  Sum_probs=32.8

Q ss_pred             ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH   91 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~   91 (116)
                      +..+++++.+.+..+ +...-...|..+.+++.+.+.. .+...-...+..+.+++.+.+..+ +...-...+.++ .++
T Consensus        31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~  106 (129)
T PF13306_consen   31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLK  106 (129)
T ss_dssp             TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--
T ss_pred             ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cce
Confidence            444445555555543 3222223344444555555543 222112223445566666666443 221112234444 556


Q ss_pred             EEecccCccccccchHHhhhcCC
Q 035618           92 YLDLSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        92 ~l~l~~n~l~~~~p~~~~~l~~L  114 (116)
                      .+.+.. .+...-...|.+++.|
T Consensus       107 ~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  107 EINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EEE-TT-B-SS----GGG-----
T ss_pred             EEEECC-CccEECCccccccccC
Confidence            665543 3322223345555444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.61  E-value=0.0016  Score=23.33  Aligned_cols=16  Identities=50%  Similarity=0.798  Sum_probs=8.1

Q ss_pred             CCCEEecccCccccccc
Q 035618           89 KLHYLDLSKNQFFQELP  105 (116)
Q Consensus        89 ~l~~l~l~~n~l~~~~p  105 (116)
                      +|+.|++++|++ ..+|
T Consensus         2 ~L~~L~l~~n~L-~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRL-TSLP   17 (17)
T ss_dssp             T-SEEEETSS---SSE-
T ss_pred             ccCEEECCCCCC-CCCc
Confidence            567777777776 4444

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.42  E-value=0.0072  Score=40.55  Aligned_cols=88  Identities=19%  Similarity=0.254  Sum_probs=52.0

Q ss_pred             ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH   91 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~   91 (116)
                      +..+.++..|++++|.+ ..+| .  -..+|+.+.+.++.-...+|+.+.  ..|+.|.+.+|.....+|.      .|+
T Consensus        48 ~~~~~~l~~L~Is~c~L-~sLP-~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDI-ESLP-V--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCC-cccC-C--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence            33467888999999877 5555 2  234688888877533225665542  4678888887732233443      355


Q ss_pred             EEecccCcc--ccccchHHhhh
Q 035618           92 YLDLSKNQF--FQELPKELEKV  111 (116)
Q Consensus        92 ~l~l~~n~l--~~~~p~~~~~l  111 (116)
                      .|++..+..  .+.+|..+..|
T Consensus       116 ~L~L~~n~~~~L~~LPssLk~L  137 (426)
T PRK15386        116 SLEIKGSATDSIKNVPNGLTSL  137 (426)
T ss_pred             eEEeCCCCCcccccCcchHhhe
Confidence            555555442  24556555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.34  E-value=0.00037  Score=44.24  Aligned_cols=86  Identities=22%  Similarity=0.147  Sum_probs=63.3

Q ss_pred             CcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcH--HHhcccCCCE
Q 035618           15 SSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPE--SLGKLLKLHY   92 (116)
Q Consensus        15 l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~~~~l~~   92 (116)
                      +.+...|+.-++.+.. +. -..+|+.|+++.++-|.++.  ...+..|+.|+.+.+..|.+. .+.+  -+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~D-Is-ic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD-IS-ICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccH-HH-HHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence            4455666777776632 21 23579999999999999983  445778999999999999874 3333  3578999999


Q ss_pred             EecccCccccccc
Q 035618           93 LDLSKNQFFQELP  105 (116)
Q Consensus        93 l~l~~n~l~~~~p  105 (116)
                      |++..|...+.-+
T Consensus        93 LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   93 LWLDENPCCGEAG  105 (388)
T ss_pred             HhhccCCcccccc
Confidence            9999998766554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.28  E-value=0.0044  Score=39.49  Aligned_cols=90  Identities=22%  Similarity=0.235  Sum_probs=59.3

Q ss_pred             Ccccceeeccccccccccchhh----cCCCCCCeEeccc---CcceecCch-------hhhccCCCCeEEeeceeeccCC
Q 035618           15 SSHLHAFDLLFNHLFVEIPNDL----GKLNSLTKLILKW---NQFTGRLPP-------EISSFIKLEDIGLSINRFISSI   80 (116)
Q Consensus        15 l~~L~~l~l~~n~~~~~~~~~~----~~l~~l~~l~l~~---~~~~~~~~~-------~~~~~~~L~~l~l~~n~~~~~~   80 (116)
                      +..+..+++++|.++......+    ..-.+|+..+++.   .+.+.++++       .+-.|+.++..+++.|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            5677888999998866544433    3345666666553   222333333       3446788888999998887666


Q ss_pred             cHH----HhcccCCCEEecccCccccccc
Q 035618           81 PES----LGKLLKLHYLDLSKNQFFQELP  105 (116)
Q Consensus        81 ~~~----~~~~~~l~~l~l~~n~l~~~~p  105 (116)
                      |+.    +.+...+.+|.+.+|-+ |++.
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGl-Gp~a  136 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGL-GPIA  136 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCC-Cccc
Confidence            643    55667888998888887 6543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.22  E-value=0.0063  Score=39.73  Aligned_cols=87  Identities=20%  Similarity=0.173  Sum_probs=40.3

Q ss_pred             CCcccceeeccccccccc----cchhhcCCCCCCeEecccCcceec----CchhhhccCCCCeEEeeceeeccCC----c
Q 035618           14 KSSHLHAFDLLFNHLFVE----IPNDLGKLNSLTKLILKWNQFTGR----LPPEISSFIKLEDIGLSINRFISSI----P   81 (116)
Q Consensus        14 ~l~~L~~l~l~~n~~~~~----~~~~~~~l~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~----~   81 (116)
                      .-+.|+.+....|++...    +...+...+.|+.+.++.|.+...    +...+..|++|+.|++..|-++..-    .
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            344556666666654221    222333445555555555554311    1123445555555555555443211    1


Q ss_pred             HHHhcccCCCEEecccCcc
Q 035618           82 ESLGKLLKLHYLDLSKNQF  100 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l  100 (116)
                      ..++.+++|+.+++++|.+
T Consensus       235 kaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             HHhcccchheeeccccccc
Confidence            2234445555555555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.03  E-value=8.5e-05  Score=45.90  Aligned_cols=90  Identities=26%  Similarity=0.293  Sum_probs=70.5

Q ss_pred             CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCC
Q 035618           11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKL   90 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l   90 (116)
                      .+......+.||++.|+. ...-..|+.+..+..++++.|.+. ..|..+++...+..+++..|.+ ...|.++...+++
T Consensus        37 ei~~~kr~tvld~~s~r~-vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRL-VNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHH-HhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch-hhCCccccccCCc
Confidence            456667788889988886 555566777888888899999888 7888888888888887777665 4678888888999


Q ss_pred             CEEecccCccccc
Q 035618           91 HYLDLSKNQFFQE  103 (116)
Q Consensus        91 ~~l~l~~n~l~~~  103 (116)
                      +.+++-+|.+...
T Consensus       114 k~~e~k~~~~~~~  126 (326)
T KOG0473|consen  114 KKNEQKKTEFFRK  126 (326)
T ss_pred             chhhhccCcchHH
Confidence            9999888876433

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.95  E-value=0.0045  Score=24.03  Aligned_cols=21  Identities=43%  Similarity=0.422  Sum_probs=12.2

Q ss_pred             cCCCEEecccCccccccchHH
Q 035618           88 LKLHYLDLSKNQFFQELPKEL  108 (116)
Q Consensus        88 ~~l~~l~l~~n~l~~~~p~~~  108 (116)
                      ++|+.|++++|.++.+.+..+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            467777777777755554444

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.76  E-value=0.029  Score=35.95  Aligned_cols=42  Identities=26%  Similarity=0.302  Sum_probs=29.0

Q ss_pred             ccCCcccceeeccccccccccchh----hcCCCCCCeEecccCcce
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIPND----LGKLNSLTKLILKWNQFT   53 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~~~----~~~l~~l~~l~l~~~~~~   53 (116)
                      +-++++|+.+++++|-++...|+.    ++....+.++.+.+|.+.
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            456788888888888875555543    344566777777777664

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.39  E-value=0.026  Score=31.18  Aligned_cols=84  Identities=19%  Similarity=0.178  Sum_probs=48.6

Q ss_pred             CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch-hhhccCCCCeEEeeceeeccCCcHHHhcccC
Q 035618           11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSINRFISSIPESLGKLLK   89 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~   89 (116)
                      .|..+++|+.+.+.. .+...-...|..+.+++.+.+..+ +. .++. .+..+..++.+.+..+ +...-...|..+.+
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPNN-LKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETST-T-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeeccccccccccccc-cccccccccccccc
Confidence            466778899999875 453444456777878999998775 55 3444 5777878999988652 22122235677889


Q ss_pred             CCEEecccC
Q 035618           90 LHYLDLSKN   98 (116)
Q Consensus        90 l~~l~l~~n   98 (116)
                      ++.+.+..+
T Consensus        83 l~~i~~~~~   91 (129)
T PF13306_consen   83 LKNIDIPSN   91 (129)
T ss_dssp             ECEEEETTT
T ss_pred             ccccccCcc
Confidence            999998765

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.24  E-value=0.023  Score=22.37  Aligned_cols=19  Identities=47%  Similarity=0.618  Sum_probs=14.2

Q ss_pred             cCCCEEecccCccccccchH
Q 035618           88 LKLHYLDLSKNQFFQELPKE  107 (116)
Q Consensus        88 ~~l~~l~l~~n~l~~~~p~~  107 (116)
                      ++|+.|++++|.+ ..+|..
T Consensus         2 ~~L~~L~L~~N~l-~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQL-SSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcC-CcCCHH
Confidence            5678888888888 555654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.24  E-value=0.023  Score=22.37  Aligned_cols=19  Identities=47%  Similarity=0.618  Sum_probs=14.2

Q ss_pred             cCCCEEecccCccccccchH
Q 035618           88 LKLHYLDLSKNQFFQELPKE  107 (116)
Q Consensus        88 ~~l~~l~l~~n~l~~~~p~~  107 (116)
                      ++|+.|++++|.+ ..+|..
T Consensus         2 ~~L~~L~L~~N~l-~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQL-SSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcC-CcCCHH
Confidence            5678888888888 555654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.27  E-value=0.024  Score=36.72  Aligned_cols=61  Identities=21%  Similarity=0.192  Sum_probs=40.0

Q ss_pred             CCCCCeEecccCcceecCch---hhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccCcc
Q 035618           39 LNSLTKLILKWNQFTGRLPP---EISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF  100 (116)
Q Consensus        39 l~~l~~l~l~~~~~~~~~~~---~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l  100 (116)
                      ..+++.+++.+|.+. .+.+   .+.+++.++.|+++.|++...+...-....+|+.+-+.|..+
T Consensus        70 ~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen   70 VTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL  133 (418)
T ss_pred             hhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence            566778888888876 3333   456788888888888877654432112445677777766554

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.18  E-value=0.053  Score=36.60  Aligned_cols=69  Identities=17%  Similarity=0.289  Sum_probs=48.9

Q ss_pred             hcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccC-ccccccchHHhhh
Q 035618           36 LGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKN-QFFQELPKELEKV  111 (116)
Q Consensus        36 ~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n-~l~~~~p~~~~~l  111 (116)
                      +..+.++..|++++|.++ .+|. +  -.+|+.|.+.++.-...+|+.+  ..+|+.|++++| .+ ..+|..+..|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L-~sLP~sLe~L  117 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI-SGLPESVRSL  117 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc-cccccccceE
Confidence            334678999999999888 6773 1  2358899998754444566654  358999999998 55 6778766544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=92.27  E-value=0.012  Score=38.04  Aligned_cols=87  Identities=23%  Similarity=0.253  Sum_probs=50.3

Q ss_pred             ccceeeccccccccc-cchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeecee-eccC-CcHHHhcccCCCEE
Q 035618           17 HLHAFDLLFNHLFVE-IPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR-FISS-IPESLGKLLKLHYL   93 (116)
Q Consensus        17 ~L~~l~l~~n~~~~~-~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~-~~~~~~~~~~l~~l   93 (116)
                      .++.+|++...++.. +-.-++.+.+|+.+.+.++++...+...+.....|..++++.+. ++.. +.-.+..++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            467777777665332 22224456677777777777765555566666777777776543 1111 11124566677777


Q ss_pred             ecccCccccc
Q 035618           94 DLSKNQFFQE  103 (116)
Q Consensus        94 ~l~~n~l~~~  103 (116)
                      +++-|.+..+
T Consensus       266 NlsWc~l~~~  275 (419)
T KOG2120|consen  266 NLSWCFLFTE  275 (419)
T ss_pred             CchHhhccch
Confidence            7776665443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=91.04  E-value=0.15  Score=33.28  Aligned_cols=58  Identities=28%  Similarity=0.272  Sum_probs=27.8

Q ss_pred             CCCCCCeEecccC-cceecCchhhhccCCCCeEEeeceeeccCCcHH---HhcccCCCEEeccc
Q 035618           38 KLNSLTKLILKWN-QFTGRLPPEISSFIKLEDIGLSINRFISSIPES---LGKLLKLHYLDLSK   97 (116)
Q Consensus        38 ~l~~l~~l~l~~~-~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~~~~l~~l~l~~   97 (116)
                      +++++..+|++.+ .++......+.+++.|+++.+++|=  +.+|..   +..++.+.+|++-+
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             hCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEecc
Confidence            3556666666554 2332222344455556665555442  233332   34455555665544

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=91.02  E-value=0.15  Score=20.33  Aligned_cols=18  Identities=39%  Similarity=0.597  Sum_probs=13.8

Q ss_pred             cCCCEEecccCccccccch
Q 035618           88 LKLHYLDLSKNQFFQELPK  106 (116)
Q Consensus        88 ~~l~~l~l~~n~l~~~~p~  106 (116)
                      .+|+.|++++|++ ..+|+
T Consensus         2 ~~L~~L~vs~N~L-t~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQL-TSLPE   19 (26)
T ss_pred             cccceeecCCCcc-ccCcc
Confidence            3577888888888 77775

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.37  E-value=0.1  Score=31.86  Aligned_cols=81  Identities=22%  Similarity=0.151  Sum_probs=41.9

Q ss_pred             ccceeeccccccccccchhhcCCCCCCeEecccCccee-cCchhhh-ccCCCCeEEeecee-eccCCcHHHhcccCCCEE
Q 035618           17 HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTG-RLPPEIS-SFIKLEDIGLSINR-FISSIPESLGKLLKLHYL   93 (116)
Q Consensus        17 ~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~-~~~~~~~-~~~~L~~l~l~~n~-~~~~~~~~~~~~~~l~~l   93 (116)
                      .++.++-++..+...--..+..++.++.+.+.++.-.+ ..-+.++ -.++|+.|++++|. ++..--..+..+++|+.+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            35566666666544444556666666666666654321 1111121 24567777777653 222212335566666666


Q ss_pred             eccc
Q 035618           94 DLSK   97 (116)
Q Consensus        94 ~l~~   97 (116)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            5543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.20  E-value=0.0083  Score=37.46  Aligned_cols=76  Identities=21%  Similarity=0.221  Sum_probs=58.0

Q ss_pred             cCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           37 GKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        37 ~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      ........+|++.|++. .+...+.-++.+..++++.|++. .+|..+.....++.++.-.|.+ ...|.+++..+.++
T Consensus        39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHPK  114 (326)
T ss_pred             hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch-hhCCccccccCCcc
Confidence            33456678888888876 45556666778888899988874 6788888888888888888888 77788888887764

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=88.99  E-value=0.4  Score=19.08  Aligned_cols=13  Identities=46%  Similarity=0.613  Sum_probs=10.4

Q ss_pred             cCCCEEecccCcc
Q 035618           88 LKLHYLDLSKNQF  100 (116)
Q Consensus        88 ~~l~~l~l~~n~l  100 (116)
                      .+|+.|++++|.|
T Consensus         2 ~~L~~L~L~~NkI   14 (26)
T smart00365        2 TNLEELDLSQNKI   14 (26)
T ss_pred             CccCEEECCCCcc
Confidence            4678888888888

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=88.28  E-value=0.42  Score=19.17  Aligned_cols=13  Identities=46%  Similarity=0.583  Sum_probs=9.0

Q ss_pred             cCCCEEecccCcc
Q 035618           88 LKLHYLDLSKNQF  100 (116)
Q Consensus        88 ~~l~~l~l~~n~l  100 (116)
                      ++|+.|++++|.+
T Consensus         2 ~~L~~LdL~~N~i   14 (28)
T smart00368        2 PSLRELDLSNNKL   14 (28)
T ss_pred             CccCEEECCCCCC
Confidence            3567777777777

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=80.08  E-value=2.2  Score=28.95  Aligned_cols=88  Identities=23%  Similarity=0.094  Sum_probs=44.7

Q ss_pred             cCCcccceeecccc-ccccccc----hhhcCCCCCCeEecccCc-ceecCchhhh-ccCCCCeEEeecee-eccC-CcHH
Q 035618           13 GKSSHLHAFDLLFN-HLFVEIP----NDLGKLNSLTKLILKWNQ-FTGRLPPEIS-SFIKLEDIGLSINR-FISS-IPES   83 (116)
Q Consensus        13 ~~l~~L~~l~l~~n-~~~~~~~----~~~~~l~~l~~l~l~~~~-~~~~~~~~~~-~~~~L~~l~l~~n~-~~~~-~~~~   83 (116)
                      ..++.|+.++++++ ......+    .....+..++.+++.++. +....-..+. .|++|+.+.+..+. ++.. +-..
T Consensus       211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i  290 (482)
T KOG1947|consen  211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI  290 (482)
T ss_pred             hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence            34566777777652 1111111    122234667777777666 3322222232 26677777765554 2211 1122


Q ss_pred             HhcccCCCEEecccCcc
Q 035618           84 LGKLLKLHYLDLSKNQF  100 (116)
Q Consensus        84 ~~~~~~l~~l~l~~n~l  100 (116)
                      ...++.|+.++++++..
T Consensus       291 ~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  291 AERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHhcCcccEEeeecCcc
Confidence            34566788888877665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	116
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-07
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-07
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-07

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 42/83 (50%)
Query: 1   MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
           +NN  G IP  I K + LH   +   ++   IP+ L ++ +L  L   +N  +G LPP I
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 61  SSFIKLEDIGLSINRFISSIPES 83
           SS   L  I    NR   +IP+S
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDS 168

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 48/114 (42%)
Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N  TG IP  +   S L +  L FN+L   IP+ LG L+ L  L L  N   G +P E+ 
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 62  SFIKLEDIGLSINRFISSIPESXXXXXXXXXXXXXXNQFFQELPKELEKVVQLS 115
               LE + L  N     IP                N+   E+PK + ++  L+
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 48/114 (42%)
Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N  TG IP  +   S L +  L FN+L   IP+ LG L+ L  L L  N   G +P E+ 
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 62  SFIKLEDIGLSINRFISSIPESXXXXXXXXXXXXXXNQFFQELPKELEKVVQLS 115
               LE + L  N     IP                N+   E+PK + ++  L+
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 514

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	116
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 93.8 bits (234), Expect = 1e-24
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 1/109 (0%)

Query: 1   MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
           +NN  G IP  I K + LH   +   ++   IP+ L ++ +L  L   +N  +G LPP I
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145

Query: 61  SSFIKLEDIGLSINRFISSIPESLGKLLKLH-YLDLSKNQFFQELPKEL 108
           SS   L  I    NR   +IP+S G   KL   + +S+N+   ++P   
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 86.8 bits (216), Expect = 5e-22
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 1/113 (0%)

Query: 5   TGDIPCEIGKSSHLHAFDLL-FNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSF 63
              IP  +    +L+   +   N+L   IP  + KL  L  L +     +G +P  +S  
Sbjct: 65  PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124

Query: 64  IKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
             L  +  S N    ++P S+  L  L  +    N+    +P       +L  
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 82.2 bits (204), Expect = 3e-20
 Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 3/115 (2%)

Query: 2   NNSTGDIPCEIGKSSHLHAF-DLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
           N  +G IP   G  S L     +  N L  +IP     LN L  + L  N   G      
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLF 217

Query: 61  SSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115
            S    + I L+ N     +   +G    L+ LDL  N+ +  LP+ L ++  L 
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 80.7 bits (200), Expect = 1e-19
 Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 2/106 (1%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N  TG IP      + L   DL  N L  +     G   +  K+ L  N     L  ++ 
Sbjct: 184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVG 241

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKE 107
               L  + L  NR   ++P+ L +L  LH L++S N    E+P+ 
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 32  IPNDLGKLNSLTKLILKWNQFTGR--LPPEISSFIKLEDIGLS-INRFISSIPESLGKLL 88
           + +   +   +  L L          +P  +++   L  + +  IN  +  IP ++ KL 
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 89  KLHYLDLSKNQFFQELPKELEKVVQLSE 116
           +LHYL ++       +P  L ++  L  
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVT 129

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 90.4 bits (225), Expect = 1e-22
 Identities = 37/108 (34%), Positives = 51/108 (47%)

Query: 1   MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
           +N   G+IP E+     L    L FN L  EIP+ L    +L  + L  N+ TG +P  I
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510

Query: 61  SSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKEL 108
                L  + LS N F  +IP  LG    L +LDL+ N F   +P  +
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 89.6 bits (223), Expect = 2e-22
 Identities = 42/107 (39%), Positives = 55/107 (51%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N  +G IP  +G  S L    L  N L  EIP +L  + +L  LIL +N  TG +P  +S
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKEL 108
           +   L  I LS NR    IP+ +G+L  L  L LS N F   +P EL
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 89.2 bits (222), Expect = 3e-22
 Identities = 38/114 (33%), Positives = 55/114 (48%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N  TG IP  +   S L +  L FN+L   IP+ LG L+ L  L L  N   G +P E+ 
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115
               LE + L  N     IP  L     L+++ LS N+   E+PK + ++  L+
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.3 bits (212), Expect = 7e-21
 Identities = 26/115 (22%), Positives = 48/115 (41%)

Query: 1   MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
           +    G    ++ + S  +  ++                 S+  L + +N  +G +P EI
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652

Query: 61  SSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115
            S   L  + L  N    SIP+ +G L  L+ LDLS N+    +P+ +  +  L+
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.8 bits (208), Expect = 2e-20
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 2   NNSTGDIPCEIGKS--SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE 59
           NN +G I   + ++  + L    L  N    +IP  L   + L  L L +N  +G +P  
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437

Query: 60  ISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKEL 108
           + S  KL D+ L +N     IP+ L  +  L  L L  N    E+P  L
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.5 bits (202), Expect = 1e-19
 Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 3/116 (2%)

Query: 2   NNSTGDIPCEIGK-SSHLHAFDLLFNHLFVEIPNDLGK--LNSLTKLILKWNQFTGRLPP 58
           N  +G++P  +   S+ L   DL  N+    I  +L +   N+L +L L+ N FTG++PP
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412

Query: 59  EISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
            +S+  +L  + LS N    +IP SLG L KL  L L  N    E+P+EL  V  L
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.5 bits (202), Expect = 2e-19
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N+ TG+IP  +   ++L+   L  N L  EIP  +G+L +L  L L  N F+G +P E+ 
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
               L  + L+ N F  +IP ++ K        ++ N    +    ++      E
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKE 586

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.2 bits (196), Expect = 1e-18
 Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 4/114 (3%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           NN +  IP  +G  S L   D+  N L  +    +     L  L +  NQF G +PP   
Sbjct: 210 NNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--L 266

Query: 62  SFIKLEDIGLSINRFISSIPESL-GKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
               L+ + L+ N+F   IP+ L G    L  LDLS N F+  +P        L
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.8 bits (195), Expect = 1e-18
 Identities = 27/104 (25%), Positives = 44/104 (42%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
               G        +  +   D+ +N L   IP ++G +  L  L L  N  +G +P E+ 
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELP 105
               L  + LS N+    IP+++  L  L  +DLS N     +P
Sbjct: 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.2 bits (183), Expect = 5e-17
 Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 4/118 (3%)

Query: 2   NNSTGDIPCE-IGKSSHLHAFDLLFNHLFVEIPNDLGKL-NSLTKLILKWNQFTGRLPPE 59
           NN +G++P + + K   L   DL FN    E+P  L  L  SL  L L  N F+G + P 
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387

Query: 60  ISSFIK--LEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115
           +    K  L+++ L  N F   IP +L    +L  L LS N     +P  L  + +L 
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.2 bits (183), Expect = 5e-17
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N  +GD+   + +  +L   D+  N+    IP  LG  ++L  L +  N+ +G     IS
Sbjct: 188 NKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIS 244

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKEL 108
           +  +L+ + +S N+F+  IP     L  L YL L++N+F  E+P  L
Sbjct: 245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL 289

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.8 bits (182), Expect = 7e-17
 Identities = 42/109 (38%), Positives = 53/109 (48%), Gaps = 4/109 (3%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDL-GKLNSLTKLILKWNQFTGRLPPEI 60
           N   G IP        L    L  N    EIP+ L G  ++LT L L  N F G +PP  
Sbjct: 257 NQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314

Query: 61  SSFIKLEDIGLSINRFISSIP-ESLGKLLKLHYLDLSKNQFFQELPKEL 108
            S   LE + LS N F   +P ++L K+  L  LDLS N+F  ELP+ L
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.9 bits (177), Expect = 3e-16
 Identities = 27/136 (19%), Positives = 43/136 (31%), Gaps = 22/136 (16%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N  TG+IP  IG+  +L    L  N     IP +LG   SL  L L  N F G +P  + 
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559

Query: 62  ----------------------SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQ 99
                                    K      ++  F     E L +L   +  +++   
Sbjct: 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619

Query: 100 FFQELPKELEKVVQLS 115
           +        +    + 
Sbjct: 620 YGGHTSPTFDNNGSMM 635

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.5 bits (176), Expect = 4e-16
 Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 6/115 (5%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWN--QFTGRLPPE 59
           N   G IP  + K S      +  N +  +    +       +     N  +F G    +
Sbjct: 548 NLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603

Query: 60  ISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
           ++         ++   +      +      + +LD+S N     +PKE+  +  L
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.4 bits (168), Expect = 5e-15
 Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 4/117 (3%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP--E 59
           N     +   +   + L +  L  +H+   +        SLT L L  N  +G +     
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTS 121

Query: 60  ISSFIKLEDIGLSINRFISSIPESLG-KLLKLHYLDLSKNQFFQELPKELEKVVQLS 115
           + S   L+ + +S N        S G KL  L  LDLS N                 
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.0 bits (167), Expect = 8e-15
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 7/117 (5%)

Query: 2   NNSTGDIPCEIG-KSSHLHAFDLLFNHLFVEIPNDL---GKLNSLTKLILKWNQFTGRLP 57
           N          G K + L   DL  N +                L  L +  N+ +G + 
Sbjct: 136 NTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195

Query: 58  PEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
             +S  + LE + +S N F + IP  LG    L +LD+S N+   +  + +    +L
Sbjct: 196 --VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTEL 249

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.2 bits (144), Expect = 1e-11
 Identities = 30/82 (36%), Positives = 42/82 (51%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N  +G IP EIG   +L   +L  N +   IP+++G L  L  L L  N+  GR+P  +S
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701

Query: 62  SFIKLEDIGLSINRFISSIPES 83
           +   L +I LS N     IPE 
Sbjct: 702 ALTMLTEIDLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.2 bits (139), Expect = 5e-11
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 15  SSHLHAFDLLFNHL---FVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGL 71
              + + DL    L   F  + + L  L  L  L L  +   G +         L  + L
Sbjct: 49  DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDL 107

Query: 72  SINRFISSIPE--SLGKLLKLHYLDLSKNQF 100
           S N     +    SLG    L +L++S N  
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 138

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 67.3 bits (165), Expect = 1e-14
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 2/110 (1%)

Query: 7   DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKL 66
           D   E     +L +  L +  +   +P  +  L +L  L ++ +  +  L P I    KL
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL 231

Query: 67  EDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
           E++ L     + + P   G    L  L L        LP ++ ++ QL +
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.5 bits (163), Expect = 2e-14
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 1/101 (0%)

Query: 8   IPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLE 67
           +P  I    +L +  +  + L   +   +  L  L +L L+        PP       L+
Sbjct: 198 LPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 68  DIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKEL 108
            + L     + ++P  + +L +L  LDL        LP  +
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.7 bits (153), Expect = 5e-13
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 12/124 (9%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           +      P +  + SHL    +    L +E+P+ + +   L  L L  N     LP  I+
Sbjct: 90  SVPLPQFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQFAGLETLTLARNPLR-ALPASIA 147

Query: 62  SFIKLEDIGLSINRFISSIPESLGK---------LLKLHYLDLSKNQFFQELPKELEKVV 112
           S  +L ++ +     ++ +PE L           L+ L  L L      + LP  +  + 
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQ 206

Query: 113 QLSE 116
            L  
Sbjct: 207 NLKS 210

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.9 bits (151), Expect = 8e-13
 Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 5/117 (4%)

Query: 2   NNSTGDIPCEIGKSSH--LHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE 59
             +       +  ++     A +L    L  + P+   +L+ L  + +        LP  
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDT 122

Query: 60  ISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
           +  F  LE + L+ N  + ++P S+  L +L  L +       ELP+ L       E
Sbjct: 123 MQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.5 bits (150), Expect = 1e-12
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 3/108 (2%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKW-NQFTGRLPPEI 60
           N+    +   I     L   DL         P   G    L +LILK  +     LP +I
Sbjct: 215 NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDI 273

Query: 61  SSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKEL 108
               +LE + L     +S +P  + +L     + +  +   Q L +  
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ-LDQHR 320

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.7 bits (158), Expect = 1e-13
 Identities = 17/125 (13%), Positives = 39/125 (31%), Gaps = 10/125 (8%)

Query: 1   MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFT------- 53
                     +      L   ++       ++P  L  L  +  + +  N+         
Sbjct: 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD 293

Query: 54  -GRLPPEISSFIKLEDIGLSINRFIS-SIPESLGKLLKLHYLDLSKNQFFQELPKELEKV 111
             +   +     K++ I +  N   +  +  SL K+ KL  L+   NQ  +         
Sbjct: 294 DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSE 352

Query: 112 VQLSE 116
           ++L+ 
Sbjct: 353 IKLAS 357

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 1e-13
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 5/110 (4%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLF-VEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
                    +      +    + +N+L    +   L K+  L  L   +NQ  G   P  
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAF 349

Query: 61  SSFIKLEDIGLSINRFISSIPESLGKLLK-LHYLDLSKNQFFQELPKELE 109
            S IKL  + L+ N+ I+ IP +     + +  L  + N+  + +P   +
Sbjct: 350 GSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFD 397

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 4e-13
 Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDL--GKLNSLTKLILKWNQFTGRLPPE 59
            NS  D       +  L + DL FN L  ++ +D     L  L  + L +N F+   P +
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ 531

Query: 60  ISSFIKLEDIGL------SINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKEL 108
             +   L+  G+        NR +   PE +     L  L +  N   +++ +++
Sbjct: 532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKI 585

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 4e-13
 Identities = 13/115 (11%), Positives = 34/115 (29%), Gaps = 6/115 (5%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           +     I      +        L N++   +   + +L  L +  +  + F      E  
Sbjct: 169 DPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEA- 226

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
                E+      +   +       L  L  +++       +LP  L+ + ++  
Sbjct: 227 ----WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 3e-11
 Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 15/113 (13%)

Query: 11  EIGKSSHLHAFDLLFNHL-------FVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSF 63
           +    S + A D  +N +       F  +     K  +++ + L  NQ +       S+ 
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 64  IKLEDIGLSINRF-------ISSIPESLGKLLKLHYLDLSKNQFFQELPKELE 109
             L  I L  N         +    E+      L  +DL  N+   +L  +  
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFR 508

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 17/130 (13%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHL-------FVEIPNDLGKLNSLTKLILKWNQFTG 54
           N  +          S L + +L+ N L         +   +      LT + L++N+ T 
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

Query: 55  RLPPEI--SSFIKLEDIGLSINRFISSIPESLGKLLKL------HYLDLSKNQFFQELPK 106
            L  +   ++   L  I LS N F S  P        L      +  D   N+  +E P+
Sbjct: 503 -LSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

Query: 107 ELEKVVQLSE 116
            +     L++
Sbjct: 561 GITLCPSLTQ 570

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 5e-11
 Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 11/116 (9%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPN--DLGKLNSLTKLILKWNQFTG----- 54
           N  T       G +  +       N L   IPN  D   ++ ++ +   +N+        
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 55  --RLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKEL 108
              L P     I +  I LS N+      E       L  ++L  N    E+PK  
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEIPKNS 476

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 12/119 (10%)

Query: 8   IPCEIGKSSHLHAFDLLFNHLFVEIPNDL-GKLNSLTKLILKWNQFTGRLPP--EISSFI 64
                G    L + +L +N +  EIP +  G    +  L    N+    +P   +  S  
Sbjct: 345 KLPAFGSEIKLASLNLAYNQI-TEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVS 402

Query: 65  KLEDIGLSINRF-------ISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
            +  I  S N            +  +  K + +  ++LS NQ  +   +       LS 
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.7 bits (132), Expect = 3e-10
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 9/98 (9%)

Query: 8   IPCEIGKSSHL------HAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
            P +   SS L      +  D   N    E P  +    SLT+L +  N     +  +I+
Sbjct: 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKIT 586

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQ 99
               +  + +  N  IS     +   ++     L  ++
Sbjct: 587 P--NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 7e-10
 Identities = 13/122 (10%), Positives = 38/122 (31%), Gaps = 6/122 (4%)

Query: 1   MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTG----RL 56
           ++         +  +  +    L        +P+ +G+L  L  L L  +          
Sbjct: 66  LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG 125

Query: 57  PPEISSFIKLEDIGLSINRFISSIPESLGKL--LKLHYLDLSKNQFFQELPKELEKVVQL 114
           P  IS+ +  E        +  +  +   +     L    ++ +   + + K     ++ 
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185

Query: 115 SE 116
           ++
Sbjct: 186 TQ 187

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 3e-09
 Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 7/121 (5%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFV----EIPNDLGKLNSLTKLILKWNQFTGRLP 57
             ++G +P  IG+ + L    L  +   V      P  +    S  +       +     
Sbjct: 91  FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFV 150

Query: 58  PEIS--SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115
                  F  L    ++ +    SI +S    LK   +    N     + K + ++ +L 
Sbjct: 151 DYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN-ITFVSKAVMRLTKLR 209

Query: 116 E 116
           +
Sbjct: 210 Q 210

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.1 bits (156), Expect = 2e-13
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 11/115 (9%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDL--GKLNSLTKLILKWNQFTGRLPPE 59
            NS          +  L   DL FN L   + +D     L  L+ + + +N F+   P +
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQ 771

Query: 60  ISSFIKLEDIGLSINRFISS------IPESLGKLLKLHYLDLSKNQFFQELPKEL 108
             +  +L+  G+   R           P  +     L  L +  N   +++ ++L
Sbjct: 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 2e-11
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 8/111 (7%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIP--NDLGKLNSLTKLILKWNQFTGRLPPE 59
                 +  +      +  F + +N+L  E P    L K+  L  L    N+        
Sbjct: 534 KADWTRLADDEDTGPKIQIFYMGYNNL-EEFPASASLQKMVKLGLLDCVHNKVRH--LEA 590

Query: 60  ISSFIKLEDIGLSINRFISSIPESLGKLLK-LHYLDLSKNQFFQELPKELE 109
             + +KL D+ L  N+ I  IPE        +  L  S N+  + +P    
Sbjct: 591 FGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFN 639

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 3e-11
 Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 5/99 (5%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
            N    I   I + + L       +                      + +         S
Sbjct: 434 TNRITFISKAIQRLTKLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQYENEELSWS 488

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100
           +   L D+ L     ++ +P+ L  L +L  L+++ N+ 
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 1e-10
 Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 17/130 (13%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHL-------FVEIPNDLGKLNSLTKLILKWNQFTG 54
           N             S +    L  N +             +      LT + L++N+ T 
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

Query: 55  RLPPEI--SSFIKLEDIGLSINRFISSIPESLGKLLKL------HYLDLSKNQFFQELPK 106
            L  +   ++   L ++ +S N F SS P       +L      H  D   N+  ++ P 
Sbjct: 743 -LSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800

Query: 107 ELEKVVQLSE 116
            +     L +
Sbjct: 801 GITTCPSLIQ 810

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 20/116 (17%), Positives = 34/116 (29%), Gaps = 12/116 (10%)

Query: 2   NNSTGDIPCEIGK-SSHLHAFDLLFNHLFVEIPND--LGKLNSLTKLILKWNQFTGRLPP 58
            N   +IP +    +  +       N L   IPN      +  +  +   +N+       
Sbjct: 604 YNQIEEIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGS-EGR 661

Query: 59  EISS------FIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKEL 108
            IS        I    + LS N       E       +  + LS N     +P+  
Sbjct: 662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENS 716

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.7 bits (116), Expect = 4e-08
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 12/115 (10%)

Query: 11  EIGKSSHLHAFDLLFNHLFVEIPNDLGK-LNSLTKLILKWNQFTGRLPP--EISSFIKLE 67
             G +  L    L +N +  EIP D     + +  L    N+    +P      S   + 
Sbjct: 590 AFGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMG 647

Query: 68  DIGLSINRFISSIPESLG------KLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
            +  S N+ I S   ++       K +    + LS N+  +   +       +S 
Sbjct: 648 SVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 15/122 (12%)

Query: 2   NNSTGDIP--CEIGKSSHLHAFDLLFNHLFVEIPN-----DLGKLNSLTKLILKWNQFTG 54
           +N    IP          + + D  +N +  E  N     D  K  + + + L +N+   
Sbjct: 628 HNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK 687

Query: 55  RLPPEISSFIKLEDIGLSINRF-------ISSIPESLGKLLKLHYLDLSKNQFFQELPKE 107
                 ++   +  I LS N         +     +      L  +DL  N+    L  +
Sbjct: 688 FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDD 746

Query: 108 LE 109
             
Sbjct: 747 FR 748

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 16/119 (13%), Positives = 39/119 (32%), Gaps = 5/119 (4%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLG----KLNSLTKLILKWNQFTGRLP 57
           ++ T        +       +   + + +           +LN    L    N+     P
Sbjct: 357 HSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416

Query: 58  PEISSFIKLEDIGLS-INRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115
            +  S I L+D  +  +   I+ I +++ +L KL  +  + + F  +      +     
Sbjct: 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 6e-07
 Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 2/102 (1%)

Query: 3   NSTGDIPC-EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           +  GD P  ++  +  +    L        +P+ +G+L  L  L    +  T        
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 62  SFIKLEDIGLSINRFISSIPE-SLGKLLKLHYLDLSKNQFFQ 102
             +  +      +R      +  L    +L+  DL ++   +
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 22/132 (16%), Positives = 37/132 (28%), Gaps = 21/132 (15%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
                D    +  S  L    +  N     I  D       T++    N+ T  +   I 
Sbjct: 388 KKMFLDYDQRLNLSDLLQD-AINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQ 445

Query: 62  SFIKLEDIGLSINRF-------------------ISSIPESLGKLLKLHYLDLSKNQFFQ 102
              KL+ I  + + F                     +   S   L  L  ++L       
Sbjct: 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT 505

Query: 103 ELPKELEKVVQL 114
           +LP  L  + +L
Sbjct: 506 QLPDFLYDLPEL 517

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 17/107 (15%), Positives = 30/107 (28%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N             S    F+   +    +   DL     +T L L      GR+P  I 
Sbjct: 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIG 344

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKEL 108
              +L+ +    +    S      + L     +  K++      K  
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMF 391

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.3 bits (144), Expect = 8e-12
 Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 1/115 (0%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
                         SHL    L  N +          L+SL KL+             I 
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 62  SFIKLEDIGLSINRFIS-SIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115
               L+++ ++ N   S  +PE    L  L +LDLS N+       +L  + Q+ 
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.3 bits (144), Expect = 9e-12
 Identities = 18/99 (18%), Positives = 27/99 (27%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N               L   DL    +          L+ L+ LIL  N          S
Sbjct: 38  NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100
               L+ +        S     +G L  L  L+++ N  
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 2/117 (1%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPND-LGKLNSLTKLILKWNQFTGRLPPEI 60
            N    +         L   D   ++L           L +L  L +             
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 61  SSFIKLEDIGLSINRFISSI-PESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
           +    LE + ++ N F  +  P+   +L  L +LDLS+ Q  Q  P     +  L  
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.0 bits (138), Expect = 6e-11
 Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 1/111 (0%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPND-LGKLNSLTKLILKWNQFTGRLPPEI 60
            ++           S L    +  N        D   +L +LT L L   Q     P   
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 61  SSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKV 111
           +S   L+ + +S N F S        L  L  LD S N       +EL+  
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 2/115 (1%)

Query: 2   NNSTGDIPCEIGKS-SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
           +N        +  S  +L   D+   H  V        L+SL  L +  N F     P+I
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 61  -SSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
            +    L  + LS  +     P +   L  L  L++S N FF       + +  L
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 18/102 (17%), Positives = 25/102 (24%)

Query: 15  SSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSIN 74
                  DL FN L             L  L L   +          S   L  + L+ N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 75  RFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
              S    +   L  L  L   +          +  +  L E
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 6e-10
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHL-FVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
            N        IG    L   ++  N +   ++P     L +L  L L  N+       ++
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 61  SSFIKLEDIGLSIN---RFISSIPESLGKLLKLHYLDLSKNQFFQELPKEL 108
               ++  + LS++     ++ I     K ++LH L L  N     + K  
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 3e-09
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 1   MNNSTGDI-PCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE 59
            N+   +  P    +  +L   DL    L    P     L+SL  L +  N F       
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513

Query: 60  ISSFIKLEDIGLSINRFISSIPESLGKLLK-LHYLDLSKNQF 100
                 L+ +  S+N  ++S  + L      L +L+L++N F
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 5/104 (4%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTG-RLPPEI 60
           N             S L     +  +L       +G L +L +L +  N     +LP   
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 61  SSFIKLEDIGLSINRFISSIPESLGKLLKLHY----LDLSKNQF 100
           S+   LE + LS N+  S     L  L ++      LDLS N  
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 17/114 (14%), Positives = 31/114 (27%), Gaps = 10/114 (8%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPND-LGKLNSLTKLILKWNQFTGR---LP 57
            N    I     K   LH   L  N   + +    +  L  L    L   +F        
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 58  PEISSFIKLEDIGLSINR------FISSIPESLGKLLKLHYLDLSKNQFFQELP 105
            + S+   L ++ +   R      ++  I +    L  +    L      +   
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 22/137 (16%), Positives = 37/137 (27%), Gaps = 24/137 (17%)

Query: 1   MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
           ++    DI       +++ +F L+   +  E   D         L L   +F      ++
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 61  SSFIKLEDIGLSIN---------------------RFISSIPESLGKLLKLHYLDLSKNQ 99
            S  +L                              F     +S      L YLDLS N 
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 100 FFQELPKELEKVVQLSE 116
               +      + QL  
Sbjct: 385 -VITMSSNFLGLEQLEH 400

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 9e-11
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 2/117 (1%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N+          K  +L   DL  N L         +L +L +L+L  N+       E+ 
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166

Query: 62  SF--IKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
            F    L+ + LS N+     P     + +L  L L+  Q    L ++L   +  + 
Sbjct: 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 17/102 (16%), Positives = 32/102 (31%)

Query: 15  SSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSIN 74
            +++   +L  N L      +  + + LT L + +N  +   P        L+ + L  N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 75  RFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
                  ++      L  L L  N   +       K   L  
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 25/116 (21%), Positives = 37/116 (31%)

Query: 1   MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
            N           + S L + D+ FN +    P    KL  L  L L+ N+ +       
Sbjct: 34  HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93

Query: 61  SSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
           +    L ++ L  N           K   L  LDLS N           ++  L E
Sbjct: 94  AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 1/87 (1%)

Query: 15  SSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSI 73
            S LH  +L  N +     +    L  L  L L  N+    L   E      + +I LS 
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 74  NRFISSIPESLGKLLKLHYLDLSKNQF 100
           N+++     S   +  L  L L +   
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVAL 466

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 9/108 (8%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRL----- 56
           NN              L  F L +N++     + L  L ++  L LK +     +     
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317

Query: 57  ----PPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100
                        LE + +  N            L+ L YL LS +  
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 4e-09
 Identities = 27/115 (23%), Positives = 37/115 (32%), Gaps = 1/115 (0%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N  +   P    K   L   +L  N L            +LT+L L  N           
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
               L  + LS N   S+   +  +L  L  L LS N+  Q L  E   +   S 
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSS 172

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 9e-09
 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 1/100 (1%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           + + G     +   SHLH  +L  N            L  L  + L  N          +
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLK-LHYLDLSKNQF 100
           + + L+ + L  N   S   +  G   + L  LD+  N F
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 4e-08
 Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 5/109 (4%)

Query: 2   NNSTGDIPCEIGKS---SHLHAFDLLFNHLFVEIPNDLGKLN--SLTKLILKWNQFTGRL 56
                 +  ++      + +    L  + L          L   +LT L L +N      
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 57  PPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELP 105
               +   +LE   L  N        SL  L  + YL+L ++   Q + 
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 5e-08
 Identities = 21/120 (17%), Positives = 31/120 (25%), Gaps = 5/120 (4%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLG---KLNSLTKLILKWNQFTGRLPP 58
           N      P        L    L    L   +   L       S+  L L  +Q +     
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 59  EISS--FIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
                 +  L  + LS N       +S   L +L Y  L  N         L  +  +  
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 5e-08
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 4/110 (3%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
            +              L   ++  N +     N    L +L  L L  +  + R     +
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 62  ----SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKE 107
               +   L  + L+ N+      ++   L  L  LDL  N+  QEL  +
Sbjct: 375 FVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 5e-08
 Identities = 23/107 (21%), Positives = 33/107 (30%), Gaps = 8/107 (7%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHL--------FVEIPNDLGKLNSLTKLILKWNQFT 53
           NN        +     L   DL  N+L               L  L+ L  L L+ N F 
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 54  GRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100
                      +L+ I L +N   +         + L  L+L KN  
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 6e-08
 Identities = 18/112 (16%), Positives = 34/112 (30%), Gaps = 9/112 (8%)

Query: 14  KSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLE------ 67
           K ++L   DL +N+L V   +    L  L    L++N         +     +       
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 68  ---DIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
                 +S+         S   L  L +L++  N            ++ L  
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 357

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 5/104 (4%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLN--SLTKLILKWNQFTGRLPPE 59
           N  +        +  +L    L  N +      +L      SL KL L  NQ     P  
Sbjct: 131 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190

Query: 60  ISSFIKLEDIGLSINRFISSIPESLG---KLLKLHYLDLSKNQF 100
             +  +L  + L+  +   S+ E L        +  L LS +Q 
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 24/117 (20%), Positives = 33/117 (28%), Gaps = 8/117 (6%)

Query: 6   GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFT--------GRLP 57
              P       +L   DL  N++     + L  L  L  L L+ N           G   
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 58  PEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
             +     L  + L  N F     E    L +L  +DL  N             V L
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 25/125 (20%), Positives = 35/125 (28%), Gaps = 10/125 (8%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHL--FVEIPNDLGKLNSLTKLILKWNQFTGRLPPE 59
           N               L    L    L      P+    L +LT L L  N         
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499

Query: 60  ISSFIKLEDIGLSINR--------FISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKV 111
           +    KLE + L  N                 L  L  LH L+L  N F +   +  + +
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559

Query: 112 VQLSE 116
            +L  
Sbjct: 560 FELKI 564

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 21/120 (17%), Positives = 37/120 (30%), Gaps = 5/120 (4%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHL-FVEIPNDLGK---LNSLTKLILKWNQFTGRLP 57
           N+  G          +L    L  +      + N+       + L  L L  N+ +    
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 58  PEISSFIKLEDIGLSINRFISSIP-ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
              S    LE + L +N     +  +    L  +  + LS N++ Q        V  L  
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.5 bits (129), Expect = 8e-10
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           +             S L   DL   HL  E+P+ L  L++L KL+L  N+F        S
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISAS 322

Query: 62  SFIKLEDIGLSINRFISSI-PESLGKLLKLHYLDLSKNQF 100
           +F  L  + +  N     +    L  L  L  LDLS +  
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 3e-08
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 2/100 (2%)

Query: 1   MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
            N    +IP  +   +     +  FN L         +L +LT L L   Q         
Sbjct: 20  ENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTF 77

Query: 61  SSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100
            S  +L+ + L+ N  I     +L     L +L   +   
Sbjct: 78  QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 1/99 (1%)

Query: 3   NSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-S 61
            ++     ++   SHL + +L +N           +   L  L L + +   +       
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100
           +   L+ + LS +    S  +    L  L +L+L  N F
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 1/102 (0%)

Query: 8   IPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLE 67
               +     L +  L  NH+             L  L  + N        ++SS  +  
Sbjct: 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180

Query: 68  DIGLSINR-FISSIPESLGKLLKLHYLDLSKNQFFQELPKEL 108
           ++ L++N   I+ I            L+    Q    + K L
Sbjct: 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 5/119 (4%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLG--KLNSLTKLILKWNQFTG--RLP 57
            N    I      S+   + +       + I   L    + SL     +           
Sbjct: 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 58  PEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
            E    + +E I L  + F +    +      L  LDL+      ELP  L  +  L +
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKK 305

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 3/118 (2%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE-I 60
                ++P  +   S L    L  N              SLT L +K N     L    +
Sbjct: 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346

Query: 61  SSFIKLEDIGLSINR--FISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
            +   L ++ LS +           L  L  L  L+LS N+      +  ++  QL  
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 15/85 (17%), Positives = 24/85 (28%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR 75
            +L   DL    ++    +     + L  L+L  N         +S    L+ +      
Sbjct: 57  INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116

Query: 76  FISSIPESLGKLLKLHYLDLSKNQF 100
             S     L     L  L L  N  
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHI 141

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 2/87 (2%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR 75
             L     +   +       L    +L  L L  N  +    P+     KL+ +    N 
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164

Query: 76  FISSIPESLGKL--LKLHYLDLSKNQF 100
                 E +  L       L+L+ N  
Sbjct: 165 IHYLSKEDMSSLQQATNLSLNLNGNDI 191

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 6e-07
 Identities = 18/115 (15%), Positives = 28/115 (24%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
                           L    L  N L       L    +L  L       +      + 
Sbjct: 67  CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
           +   LE + L  N   S          KL  LD   N       +++  + Q + 
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 8e-07
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEI-PNDLGKLNSLTKLILKWNQFT--GRLPP 58
           N               L    +  N   +E+    L  L +L +L L  +          
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 59  EISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100
           ++ +   L+ + LS N  +S   E+  +  +L  LDL+  + 
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 1/85 (1%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR 75
             L    L F  L     +    L  +  + L  N+ T     E  S +K   + L+ N 
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGIYLNLASNH 534

Query: 76  FISSIPESLGKLLKLHYLDLSKNQF 100
               +P  L  L +   ++L +N  
Sbjct: 535 ISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 4/118 (3%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHL---FVEIPNDLGKLNSLTKLILKWNQFTGRLPP 58
           +               L   +L  NH     ++  N L  L  L  L+L +   +     
Sbjct: 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

Query: 59  EISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
             +S   +  + LS NR ++S        LK  YL+L+ N     LP  L  + Q   
Sbjct: 495 AFTSLKMMNHVDLSHNR-LTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRT 551

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 18/118 (15%), Positives = 34/118 (28%), Gaps = 5/118 (4%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLT--KLILKWNQFTGRLPPE 59
           N+ +     +   +  L   D   N +      D+  L   T   L L  N   G + P 
Sbjct: 139 NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPG 197

Query: 60  ISSFIKLEDIGLSINRFISSIPESLG--KLLKLHYLDLSKNQFFQELPKELEKVVQLS 115
                  + +     + +  I + L    +  L              P   E + ++S
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 21/103 (20%), Positives = 29/103 (28%), Gaps = 4/103 (3%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHL-FVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
           N           +   L   DL F  L   +  +    L+ L  L L  +          
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

Query: 61  SSFIKLEDIGLSINRF---ISSIPESLGKLLKLHYLDLSKNQF 100
                L+ + L  N F         SL  L +L  L LS    
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 3e-09
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 13/115 (11%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           NN    +P        L    +  N L   +P        L +L++  N+ T  LP   S
Sbjct: 210 NNRLTSLPALPSG---LKELIVSGNRL-TSLPVLPS---ELKELMVSGNRLT-SLPMLPS 261

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
               L  + +  N+ ++ +PESL  L     ++L  N    E   +  + +  + 
Sbjct: 262 G---LLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP-LSERTLQALREITSAP 311

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.4 bits (123), Expect = 6e-09
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 9/95 (9%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR 75
           +     ++  + L   +P+ L     +T L++  N  T  LP        LE   +S N+
Sbjct: 40  NGNAVLNVGESGL-TTLPDCLPA--HITTLVIPDNNLT-SLPALPPELRTLE---VSGNQ 92

Query: 76  FISSIPESLGKLLKLHYLDLSKNQFFQELPKELEK 110
            ++S+P     LL+L             LP  L K
Sbjct: 93  -LTSLPVLPPGLLELSIFSNPLTH-LPALPSGLCK 125

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 30/128 (23%), Positives = 43/128 (33%), Gaps = 24/128 (18%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLN--------------SLTKLIL 47
            N    +P        L  F     HL   +P+ L KL                L +L +
Sbjct: 90  GNQLTSLPVLPPGLLELSIFSNPLTHL-PALPSGLCKLWIFGNQLTSLPVLPPGLQELSV 148

Query: 48  KWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKE 107
             NQ    LP   S   KL       N+ ++S+P        L  L +S NQ    LP  
Sbjct: 149 SDNQLA-SLPALPSELCKLW---AYNNQ-LTSLPMLPS---GLQELSVSDNQ-LASLPTL 199

Query: 108 LEKVVQLS 115
             ++ +L 
Sbjct: 200 PSELYKLW 207

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.4 bits (115), Expect = 6e-08
 Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 16/114 (14%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
            N    +P        L    +  N L   +P        L KL    NQ T  LP   S
Sbjct: 130 GNQLTSLPVLPP---GLQELSVSDNQL-ASLPALPS---ELCKLWAYNNQLT-SLPMLPS 181

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115
               L+++ +S N+ ++S+P    +L K   L    N+    LP     + +L 
Sbjct: 182 G---LQELSVSDNQ-LASLPTLPSELYK---LWAYNNR-LTSLPALPSGLKELI 227

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 8/115 (6%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
            N    +P        L    +  N L   +P        L  L +  NQ T RLP  + 
Sbjct: 230 GNRLTSLPVLPS---ELKELMVSGNRL-TSLPMLPS---GLLSLSVYRNQLT-RLPESLI 281

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
                  + L  N       ++L ++           +F         +   L  
Sbjct: 282 HLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHL 336

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 15/114 (13%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
             +   +P  +     +   ++  N L + +P       SL  L    N+ +  LP   +
Sbjct: 68  RLNLSSLPDNLPP--QITVLEITQNAL-ISLPELPA---SLEYLDACDNRLS-TLPELPA 120

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115
           S   L+   +  N+ ++ +PE       L Y++   NQ    LP+    +  LS
Sbjct: 121 SLKHLD---VDNNQ-LTMLPELPA---LLEYINADNNQ-LTMLPELPTSLEVLS 166

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 10/105 (9%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIG----L 71
           + L    +  N L   +P       SL  L +  N     LP         E+       
Sbjct: 160 TSLEVLSVRNNQL-TFLPELPE---SLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRC 214

Query: 72  SINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
             NR I+ IPE++  L     + L  N     + + L +     +
Sbjct: 215 RENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 10/109 (9%)

Query: 7   DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKL 66
           D      K           N     +      +N  ++L L     +  LP  +    ++
Sbjct: 28  DYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQLNRLNLS-SLPDNLPP--QI 82

Query: 67  EDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115
             + ++ N  + S+PE       L YLD   N+    LP+    +  L 
Sbjct: 83  TVLEITQNA-LISLPELPA---SLEYLDACDNR-LSTLPELPASLKHLD 126

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 17/101 (16%), Positives = 27/101 (26%), Gaps = 2/101 (1%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPND-LGKLNSLTKLILKWNQFTGRLPPEI 60
            N    +         L   D   + L           L  L  L + +           
Sbjct: 385 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444

Query: 61  SSFIKLEDIGLSINRFISSIPES-LGKLLKLHYLDLSKNQF 100
                L  + ++ N F  +   +       L +LDLSK Q 
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 2/107 (1%)

Query: 3   NSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE-IS 61
           + +G        ++ L   DL FN   + +  +   L  L  L  + +            
Sbjct: 363 SFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKEL 108
           S  KL  + +S              L  L+ L ++ N F       +
Sbjct: 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 18/86 (20%), Positives = 26/86 (30%)

Query: 15  SSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSIN 74
            S     DL FN L +         + L  L L   +              L ++ L+ N
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 75  RFISSIPESLGKLLKLHYLDLSKNQF 100
              S  P S   L  L  L   + + 
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKL 116

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 16/99 (16%), Positives = 29/99 (29%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           +     +      +++L   DL    L          L+ L  L +  N          +
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100
               L  +  S NR  +S          L + +L+ N  
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 20/85 (23%), Positives = 32/85 (37%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR 75
           S L   DL    +          L+ L+ LIL  N      P   S    LE++     +
Sbjct: 56  SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115

Query: 76  FISSIPESLGKLLKLHYLDLSKNQF 100
             S     +G+L+ L  L+++ N  
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFI 140

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 1/100 (1%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSIN 74
             L   D+ + +  ++       L SL  L +  N F       + ++   L  + LS  
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

Query: 75  RFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
           +           L +L  L++S N           ++  L
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 9e-07
 Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 8/113 (7%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHL-FVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
                     IG+   L   ++  N +   ++P     L +L  + L +N     +    
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVND 172

Query: 61  SSF-----IKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKEL 108
             F          + +S+N  I  I +   + +KLH L L  N     + K  
Sbjct: 173 LQFLRENPQVNLSLDMSLN-PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.2 bits (92), Expect = 9e-05
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 7/99 (7%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
            N   D   +    +++ A  L    +  +   D+ K      L +   Q          
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQ---FPTL 325

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100
               L+ + L++N+   SI      L  L YLDLS+N  
Sbjct: 326 DLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNAL 362

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 17/110 (15%), Positives = 29/110 (26%), Gaps = 9/110 (8%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGK-LNSLTKLILKWNQFTGRLPPEI 60
            N    I  +  +   LH   L  N     I     + L  L    L   +F      EI
Sbjct: 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 61  SSF--------IKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQ 102
                      + +++  L+     S        L  +  + L+      
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY 299

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 2e-08
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 7   DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKL 66
           +       S  L   +L +N +  ++   +     L  L L  N+    + PE  S   +
Sbjct: 160 NFAELAASSDTLEHLNLQYNFI-YDVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGV 216

Query: 67  EDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100
             I L  N+ +  I ++L     L + DL  N F
Sbjct: 217 TWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 9e-08
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 9   PCEIGKSSHLHAFDLLFNHL-FVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLE 67
             + G  S +   DL  N +  V         ++L  L L++N     +  ++  F KL+
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLK 194

Query: 68  DIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
            + LS N+ ++ +         + ++ L  N+    + K L     L  
Sbjct: 195 TLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEH 241

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.7 bits (101), Expect = 6e-06
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR 75
           +      +  + L   + +      ++ +L L  N  +     +++ F KLE + LS N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 76  FISSIPESLGKLLKLHYLDLSKNQFFQELP 105
            +    + L  L  L  LDL+ N   QEL 
Sbjct: 70  -LYETLD-LESLSTLRTLDLNNNY-VQELL 96

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 8/100 (8%)

Query: 2   NNSTGDIPCEIGKS-SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
           ++S       + +S  ++   DL  N L      DL     L  L L  N        ++
Sbjct: 19  DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDL 76

Query: 61  SSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100
            S   L  + L+ N       + L     +  L  + N  
Sbjct: 77  ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI 111

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 11  EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIG 70
           ++   S L   DL  N++      +L    S+  L    N  + R+          ++I 
Sbjct: 75  DLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR--GQGKKNIY 126

Query: 71  LSINRFISSIPESLGKLLKLHYLDLSKNQ 99
           L+ N+         G   ++ YLDL  N+
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNE 155

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 4/116 (3%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           +N    +  E   ++ +    L  N L V I   L    +L    L+ N F         
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFH--CGTLRD 256

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPK-ELEKVVQLSE 116
            F K + +     + +  +     +   +  L        ++LP    ++++ L  
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGH 312

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 36.5 bits (85), Expect = 8e-04
 Identities = 13/61 (21%), Positives = 20/61 (32%)

Query: 39 LNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKN 98
           N      +  +     L     S   ++++ LS N         L    KL  L+LS N
Sbjct: 9  GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 99 Q 99
           
Sbjct: 69 V 69

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.0 bits (115), Expect = 5e-08
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 12  IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGL 71
           I   S+L    ++   +  +   +L  L SLT L +  +     +  +I++  K+  I L
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 72  SINRFISSIPESLGKLLKLHYLDLSKNQ 99
           S N  I+ I   L  L +L  L++  + 
Sbjct: 144 SYNGAITDI-MPLKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.2 bits (92), Expect = 6e-05
 Identities = 13/98 (13%), Positives = 33/98 (33%), Gaps = 3/98 (3%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
            + T D    +   + L   D+  +     I   +  L  +  + L +N     + P + 
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LK 156

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQ 99
           +  +L+ + +  +  +      +    KL+ L      
Sbjct: 157 TLPELKSLNIQFDG-VHDY-RGIEDFPKLNQLYAFSQT 192

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 4/108 (3%)

Query: 3   NSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-- 60
           +  G        ++ L   DL FN + + + ++   L  L  L  + +    ++      
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVF 417

Query: 61  SSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKEL 108
            S   L  + +S      +       L  L  L ++ N F +    ++
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 5e-07
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHL-FVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
            N        IG    L   ++  N +   ++P     L +L  L L  N+       ++
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 61  SSFIKLEDIGLSIN---RFISSIPESLGKLLKLHYLDLSKNQFFQELPKEL 108
               ++  + LS++     ++ I     K ++LH L L  N     + K  
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 17/100 (17%), Positives = 24/100 (24%)

Query: 15  SSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSIN 74
                  DL FN L             L  L L   +          S   L  + L+ N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 75  RFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
              S    +   L  L  L   +          +  +  L
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 22  DLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSI 80
           D+   H  V        L+SL  L +  N F     P+I +    L  + LS  + +  +
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQL 485

Query: 81  PES-LGKLLKLHYLDLSKNQF 100
             +    L  L  L+++ NQ 
Sbjct: 486 SPTAFNSLSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 1/101 (0%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR 75
           SHL    L  N +          L+SL KL+             I     L+++ ++ N 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 76  FIS-SIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115
             S  +PE    L  L +LDLS N+       +L  + Q+ 
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 3/108 (2%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHL-FVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
            N    +         L   D   ++L  +   +    L +L  L +             
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 61  SSFIKLEDIGLSINRFISSI-PESLGKLLKLHYLDLSKNQFFQELPKE 107
           +    LE + ++ N F  +  P+   +L  L +LDLS+ Q  ++L   
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT 488

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 17/85 (20%), Positives = 26/85 (30%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR 75
             L   DL    +          L+ L+ LIL  N          S    L+ +      
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 76  FISSIPESLGKLLKLHYLDLSKNQF 100
             S     +G L  L  L+++ N  
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLI 136

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.3 bits (92), Expect = 9e-05
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 16  SHLHAFDLLFNHLFVEIPND-LGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSI 73
           S L    +  N        D   +L +LT L L   Q   +L P   +S   L+ + ++ 
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMAS 503

Query: 74  NRFISSIPESLGKLLKLHYLDLSKNQF 100
           N+  S       +L  L  + L  N +
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 7   DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKL 66
           +       S  L   +L +N +  ++   +     L  L L  N+    + PE  S   +
Sbjct: 160 NFAELAASSDTLEHLNLQYNFI-YDVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGV 216

Query: 67  EDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100
             I L  N+ +  I ++L     L + DL  N F
Sbjct: 217 TWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGF 249

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 9   PCEIGKSSHLHAFDLLFNHL-FVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLE 67
             + G  S +   DL  N +  V         ++L  L L++N     +  ++  F KL+
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLK 194

Query: 68  DIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
            + LS N+ ++ +         + ++ L  N+    + K L     L  
Sbjct: 195 TLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEH 241

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 16 SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR 75
          +      +  + L   + +      ++ +L L  N  +     +++ F KLE + LS N 
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 76 FISSIPESLGKLLKLHYLDLSKNQ 99
           +    + L  L  L  LDL+ N 
Sbjct: 70 -LYETLD-LESLSTLRTLDLNNNY 91

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.4 bits (92), Expect = 8e-05
 Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 8/100 (8%)

Query: 2   NNSTGDIPCEIGKS-SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
           ++S       + +S  ++   DL  N L      DL     L  L L  N        ++
Sbjct: 19  DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDL 76

Query: 61  SSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100
            S   L  + L+ N       + L     +  L  + N  
Sbjct: 77  ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI 111

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.4 bits (92), Expect = 8e-05
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 11  EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIG 70
           ++   S L   DL  N++      +L    S+  L    N  + R+          ++I 
Sbjct: 75  DLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR--GQGKKNIY 126

Query: 71  LSINRFISSIPESLGKLLKLHYLDLSKNQF 100
           L+ N+         G   ++ YLDL  N+ 
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 3e-07
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
            ++  DI   +   + +++ +L  NH  +   + L  +  L  L +  ++        I+
Sbjct: 119 EDNISDIS-PLANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKD--VTPIA 174

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQ 99
           +   L  + L+ N+ I  I   L  L  LHY     NQ
Sbjct: 175 NLTDLYSLSLNYNQ-IEDI-SPLASLTSLHYFTAYVNQ 210

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.8 bits (107), Expect = 9e-07
 Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 6/98 (6%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
            N   DI   +     L    +  N +     + L  L +L +L L  +  +      ++
Sbjct: 75  GNQITDIS-PLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISD--ISPLA 129

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQ 99
           +  K+  + L  N  +S     L  +  L+YL +++++
Sbjct: 130 NLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESK 166

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
            N   DI   +   + L   ++  N +     + L  L+ L  L L  NQ        I 
Sbjct: 252 TNQISDIN-AVKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQ 99
               L  + LS N  I+ I   L  L K+   D +   
Sbjct: 309 GLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 8/115 (6%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
                 I   I   ++L   +L  N +    P  L  L  LT L +  N+ T      + 
Sbjct: 53  GEKVASIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQ 107

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
           +   L ++ L+ +  IS I   L  L K++ L+L  N         L  +  L+ 
Sbjct: 108 NLTNLRELYLNEDN-ISDIS-PLANLTKMYSLNLGANH-NLSDLSPLSNMTGLNY 159

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 11  EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIG 70
            +   S L   ++  N +     N +  L  L  L +  NQ +      +++  +L  + 
Sbjct: 238 PLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLF 293

Query: 71  LSINRFISSIPESLGKLLKLHYLDLSKNQ 99
           L+ N+  +   E +G L  L  L LS+N 
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 36  LGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDL 95
           L  L+ LT L +  NQ +      +    KL+ + +  N+ IS I   L  L +L+ L L
Sbjct: 239 LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQ-ISDIS-VLNNLSQLNSLFL 294

Query: 96  SKNQFFQELPKELEKVVQLSE 116
           + NQ   E  + +  +  L+ 
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTT 315

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.4 bits (93), Expect = 6e-05
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
            +   D+   I   + L++  L +N +  +I   L  L SL       NQ T      ++
Sbjct: 164 ESKVKDVT-PIANLTDLYSLSLNYNQI-EDISP-LASLTSLHYFTAYVNQITD--ITPVA 218

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQ 99
           +  +L  + +  N+ I+ +   L  L +L +L++  NQ
Sbjct: 219 NMTRLNSLKIGNNK-ITDLS-PLANLSQLTWLEIGTNQ 254

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 16 SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR 75
          +      L    +   +     +L S+TKL++   +        I     LE + L+ N+
Sbjct: 22 AEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQ 77

Query: 76 FISSIPESLGKLLKLHYLDLSKNQ 99
           I+ I   L  L+KL  L +  N+
Sbjct: 78 -ITDISP-LSNLVKLTNLYIGTNK 99

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 6e-07
 Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 9/99 (9%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR 75
             L    L   ++         +L  L  L +    +   + P     + L  + ++   
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235

Query: 76  FISSIPE-SLGKLLKLHYLDLSKNQF-------FQELPK 106
            ++++P  ++  L+ L +L+LS N           EL +
Sbjct: 236 -LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 13/109 (11%)

Query: 7   DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIK 65
            +P  I   +     DL  N +     ++      L +L L  N  +  + P   ++   
Sbjct: 25  AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFN 81

Query: 66  LEDIGLSINRFISSIP-ESLGKLLKLHYLDLSKNQF-------FQELPK 106
           L  +GL  NR +  IP      L  L  LD+S+N+        FQ+L  
Sbjct: 82  LRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE-ISSFIKLEDIGLSIN 74
             L   ++        +  +     +LT L +     T  +P   +   + L  + LS N
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN 258

Query: 75  RFISSIPE-SLGKLLKLHYLDLSKNQ 99
             IS+I    L +LL+L  + L   Q
Sbjct: 259 P-ISTIEGSMLHELLRLQEIQLVGGQ 283

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 16  SHLHAFDLLFNHLFVEIPND-LGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSI 73
            HL   +L  N +   +       L +L  L L+ N+    +P  + +    L  + +S 
Sbjct: 56  PHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISE 113

Query: 74  NRFISSIPE-SLGKLLKLHYLDLSKNQ 99
           N+ I  + +     L  L  L++  N 
Sbjct: 114 NK-IVILLDYMFQDLYNLKSLEVGDND 139

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 16  SHLHAFDLLFNHLFVEIPND-LGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSI 73
            +L + ++  N L V I +     LNSL +L L+    T  +P E  S    L  + L  
Sbjct: 128 YNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRH 185

Query: 74  NRFISSIPE-SLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
              I++I + S  +L +L  L++S   +   +       + L+ 
Sbjct: 186 LN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 16  SHLHAFDLLFNHLFVEIPND-LGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSI 73
            +L   +L +N +   I    L +L  L ++ L   Q    + P        L  + +S 
Sbjct: 248 VYLRFLNLSYNPI-STIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSG 305

Query: 74  NRFISSIPESL-GKLLKLHYLDLSKNQF 100
           N+ ++++ ES+   +  L  L L  N  
Sbjct: 306 NQ-LTTLEESVFHSVGNLETLILDSNPL 332

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.5 bits (107), Expect = 7e-07
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 11  EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIG 70
            + K  +     L   H  + +   L +L  +T L L  N+    LPP +++   LE + 
Sbjct: 434 SVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQ 492

Query: 71  LSINRFISSIPESLGKLLKLHYLDLSKNQ 99
            S N  + ++   +  L +L  L L  N+
Sbjct: 493 ASDNA-LENVDG-VANLPRLQELLLCNNR 519

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.7 bits (105), Expect = 1e-06
 Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 10  CEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDI 69
           C + +   +   DL  N L   +P  L  L  L  L    N     +   +++  +L+++
Sbjct: 457 CHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQEL 513

Query: 70  GLSINRFISSIPE--SLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
            L  NR +        L    +L  L+L  N    +     E++ ++
Sbjct: 514 LLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 40.1 bits (93), Expect = 5e-05
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 15  SSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSIN 74
                  D L +   +E      +   +  L L     T  +   +   + +  + LS N
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHN 473

Query: 75  RFISSIPESLGKLLKLHYLDLSKNQ 99
           R + ++P +L  L  L  L  S N 
Sbjct: 474 R-LRALPPALAALRCLEVLQASDNA 497

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 22  DLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSI 80
            L  N +    P     L +L +L L  NQ    LP  +  S  +L  + L  N+ ++ +
Sbjct: 46  YLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQ-LTVL 103

Query: 81  PESL-GKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
           P ++  +L+ L  L +  N+   ELP+ +E++  L+ 
Sbjct: 104 PSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTH 139

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 39.3 bits (92), Expect = 6e-05
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 38  KLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLS 96
            L  LT L L  NQ T  LP  +    + L+++ +  N+  + +P  + +L  L +L L 
Sbjct: 86  SLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALD 143

Query: 97  KNQ 99
           +NQ
Sbjct: 144 QNQ 146

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 19/122 (15%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKL-------------NSLTKLILK 48
           +++  ++P E         +   ++      P   G+                  +L L 
Sbjct: 20  SSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELN 79

Query: 49  WNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKEL 108
               +  LP        LE +  S N  ++ +PE    L  L   + +      +LP  L
Sbjct: 80  NLGLS-SLPELPPH---LESLVASCNS-LTELPELPQSLKSLLVDNNNLKA-LSDLPPLL 133

Query: 109 EK 110
           E 
Sbjct: 134 EY 135

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 24/128 (18%), Positives = 40/128 (31%), Gaps = 22/128 (17%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPN---------------DLGKLNSLTKLI 46
            NS  ++P        L   +     L    P                +L   + L  + 
Sbjct: 100 CNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIID 159

Query: 47  LKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPK 106
           +  N    +LP    S   LE I    N+ +  +PE L  L  L  +    N   ++LP 
Sbjct: 160 VDNNSLK-KLPDLPPS---LEFIAAGNNQ-LEELPE-LQNLPFLTAIYADNNS-LKKLPD 212

Query: 107 ELEKVVQL 114
               +  +
Sbjct: 213 LPLSLESI 220

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 16/98 (16%)

Query: 31  EIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRF------------IS 78
           E+P +   + S T+    W+++    PP      ++    L                 +S
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 79  SIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
           S+PE       L  L  S N    ELP+  + +  L  
Sbjct: 85  SLPELPP---HLESLVASCNS-LTELPELPQSLKSLLV 118

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 16/114 (14%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           +N   D+P      + L   + +F+ L    PN       L  L    N+    L     
Sbjct: 266 DNYLTDLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNEIR-SLCDLPP 317

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115
           S   LE++ +S N+ +  +P       +L  L  S N    E+P+  + + QL 
Sbjct: 318 S---LEELNVSNNK-LIELPALPP---RLERLIASFNH-LAEVPELPQNLKQLH 363

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 25/109 (22%), Positives = 33/109 (30%), Gaps = 11/109 (10%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           NNS   +P        L +     N L  E   +L  L  LT +    N     LP    
Sbjct: 204 NNSLKKLPDLPLS---LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP 257

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEK 110
           S   L      +      +PE    L  L   +   +    ELP  L  
Sbjct: 258 SLEALNVRDNYLT----DLPELPQSLTFLDVSENIFSG-LSELPPNLYY 301

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 17/113 (15%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           NN   ++P    +   L      FNHL  E+P       +L +L +++N      P    
Sbjct: 326 NNKLIELPALPPR---LERLIASFNHL-AEVPELPQ---NLKQLHVEYNPLR-EFPDIPE 377

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
           S   L      +N  ++ +PE    L     L +  N   +E P   E V  L
Sbjct: 378 SVEDLR-----MNSHLAEVPELPQNL---KQLHVETNP-LREFPDIPESVEDL 421

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR 75
             L   DL +N L   + +   K+  L +L +  N+    L         L+ + LS N 
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH 306

Query: 76  FISSIPESLGKLLKLHYLDLSKNQF 100
            +  +  +  +  +L  L L  N  
Sbjct: 307 -LLHVERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.7 bits (101), Expect = 6e-06
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR 75
             L    +  N L V +      + +L  L L  N     +      F +LE++ L  N 
Sbjct: 272 QRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329

Query: 76  FISSIPESLGKLLKLHYLDLSKNQF 100
            I ++  S      L  L LS N +
Sbjct: 330 -IVTLKLST--HHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSIN 74
             +   +L    +           +++ KL + +N     LPP +  +   L  + L  N
Sbjct: 69  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERN 127

Query: 75  RFISSIPESL-GKLLKLHYLDLSKNQ 99
             +SS+P  +     KL  L +S N 
Sbjct: 128 D-LSSLPRGIFHNTPKLTTLSMSNNN 152

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 36.6 bits (85), Expect = 8e-04
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 8/107 (7%)

Query: 11  EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIG 70
            +     +   D   N +   +   +     LT L L+ N  T      + ++  L ++ 
Sbjct: 200 TLAIPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVD 254

Query: 71  LSINRFISSIPE-SLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
           LS N  +  I      K+ +L  L +S N+    L    + +  L  
Sbjct: 255 LSYNE-LEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKV 299

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 16  SHLHAFDLLFNHLFVEIPND-LGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSI 73
            +L   DL  NHL   +       L +L  L+L  N     +         +L+ + LS 
Sbjct: 88  PNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQ 145

Query: 74  NRFISSIPE----SLGKLLKLHYLDLSKNQF-------FQELPKELEKVVQLSE 116
           N+ IS  P        KL KL  LDLS N+         Q+LP  ++  + L  
Sbjct: 146 NQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 7/96 (7%)

Query: 16  SHLHAFDLLFNHLFVEIPND-LGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSI 73
           ++LH+  L  NHL   I ++    + +L  L L  N     L   + S    LE + L  
Sbjct: 64  TNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYN 121

Query: 74  NRFISSIPE-SLGKLLKLHYLDLSKNQFFQELPKEL 108
           N  I  +   +   + +L  L LS+NQ     P EL
Sbjct: 122 NH-IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVEL 155

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 39.8 bits (93), Expect = 5e-05
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 22  DLLFNHLFVEIPN-DLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISS 79
           DL  N+L          +L +L  L+L  N     +  E       L  + LS N  + +
Sbjct: 45  DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH-LHT 102

Query: 80  IP-ESLGKLLKLHYLDLSKNQ 99
           +       L  L  L L  N 
Sbjct: 103 LDEFLFSDLQALEVLLLYNNH 123

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 12/76 (15%)

Query: 41  SLTKLILKWNQFTGRLPPEI--SSFIKLEDIGLSINRFISSIPE-SLGKLLKLHYLDLSK 97
               L L  N  + RL  E   +    L  + LS N  ++ I   +   +  L YLDLS 
Sbjct: 40  YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSS 97

Query: 98  NQF-------FQELPK 106
           N         F +L  
Sbjct: 98  NHLHTLDEFLFSDLQA 113

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 4e-06
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 22  DLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81
            L  N L+      L     LT+L L   + T        +   L  + LS N+ + S+P
Sbjct: 37  HLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQ-LQSLP 93

Query: 82  ESLGKLLKLHYLDLSKNQFFQELP 105
                L  L  LD+S N+    LP
Sbjct: 94  LLGQTLPALTVLDVSFNR-LTSLP 116

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.4 bits (100), Expect = 6e-06
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDL-GKLNSLTKLILKWNQFTGRLPPEI 60
           +N    +P        L   D+ FN L   +P      L  L +L LK N+    LPP +
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELK-TLPPGL 143

Query: 61  -SSFIKLEDIGLSINRFISSIPESL-GKLLKLHYLDLSKNQ 99
            +   KLE + L+ N  ++ +P  L   L  L  L L +N 
Sbjct: 144 LTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS 183

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 16  SHLHAFDLLFNHLFVEIPNDL-GKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSI 73
             L    L  N L   +P  L      L KL L  N  T  LP  + +    L+ + L  
Sbjct: 124 GELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181

Query: 74  NRFISSIPESLGKLLKLHYLDLSKN 98
           N  + +IP+       L +  L  N
Sbjct: 182 NS-LYTIPKGFFGSHLLPFAFLHGN 205

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 7e-06
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 16  SHLHAFDLLFNHLFVEIP-NDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSI 73
             L    L  N +  ++    L  LN+L KL L +N  +  +     ++   L ++ L+ 
Sbjct: 192 PSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNN 249

Query: 74  NRFISSIPESLGKLLKLHYLDLSKNQF 100
           N+ +  +P  L     +  + L  N  
Sbjct: 250 NK-LVKVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR 75
            +LH   L+ N +    P     L  L +L L  NQ    LP ++     L+++ +  N 
Sbjct: 76  KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENE 132

Query: 76  FISSIPE-SLGKLLKLHYLDLSKNQ 99
            I+ + +     L ++  ++L  N 
Sbjct: 133 -ITKVRKSVFNGLNQMIVVELGTNP 156

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.0 bits (99), Expect = 7e-06
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 22  DLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSI 80
           DL    L          L  LT L L +NQ    L   +     +L  +GL+ N+ ++S+
Sbjct: 41  DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQ-LASL 98

Query: 81  PESL-GKLLKLHYLDLSKNQFFQELP 105
           P  +   L +L  L L  NQ  + LP
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQ-LKSLP 123

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 39.3 bits (92), Expect = 8e-05
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 38  KLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSIPESL-GKLLKLHYLDL 95
            L  L  L L  NQ    LP  +     +L+ + L  N+ + S+P  +  +L KL  L L
Sbjct: 81  DLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRL 138

Query: 96  SKNQFFQELP 105
           + NQ  Q +P
Sbjct: 139 NTNQ-LQSIP 147

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 8e-06
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 22  DLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSI 80
            L  N     +P +L     LT + L  N+ +  L  +  S+  +L  + LS NR +  I
Sbjct: 37  YLDGNQF-TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNR-LRCI 93

Query: 81  PESL-GKLLKLHYLDLSKNQ 99
           P      L  L  L L  N 
Sbjct: 94  PPRTFDGLKSLRLLSLHGND 113

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR 75
             L   DL +N L   + +   K+  L +L +  N+    L         L+ + LS N 
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH 312

Query: 76  FISSIPESLGKLLKLHYLDLSKNQF 100
            +  +  +  +  +L  L L  N  
Sbjct: 313 -LLHVERNQPQFDRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR 75
             L    +  N L V +      + +L  L L  N     +      F +LE++ L  N 
Sbjct: 278 QRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335

Query: 76  FISSIPESLGKLLKLHYLDLSKNQF 100
            I ++   L     L  L LS N +
Sbjct: 336 -IVTLK--LSTHHTLKNLTLSHNDW 357

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 6/104 (5%)

Query: 7   DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIK 65
            +P  I   +      L  N +            +LT L L  N    R+     +    
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLAL 81

Query: 66  LEDIGLSINRFISSIP-ESLGKLLKLHYLDLSKNQFFQELPKEL 108
           LE + LS N  + S+   +   L +LH L L +    QEL   L
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGL 124

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 16  SHLHAFDLLFNHLFVEIPND-LGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSI 73
             LH   L    L  E+       L +L  L L+ N     LP +       L  + L  
Sbjct: 105 GRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHG 162

Query: 74  NRFISSIPE-SLGKLLKLHYLDLSKNQ 99
           NR ISS+PE +   L  L  L L +N+
Sbjct: 163 NR-ISSVPERAFRGLHSLDRLLLHQNR 188

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 16  SHLHAFDLLFNHLFVEIPND-LGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSI 73
           + L    L  N L   +P+D    L +LT L L  N+ +  +P         L+ + L  
Sbjct: 129 AALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQ 186

Query: 74  NRFISSIPE-SLGKLLKLHYLDLSKNQFFQELPKEL 108
           NR ++ +   +   L +L  L L  N     LP E 
Sbjct: 187 NR-VAHVHPHAFRDLGRLMTLYLFANN-LSALPTEA 220

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 9   PCEIGKSSHLHAFDLLFNHL--FVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKL 66
               G    L    L  NHL    +    L  L +LT L +  N F   +P       K+
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM 412

Query: 67  EDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
             + LS    I  +   +     L  LD+S N         L ++ +L
Sbjct: 413 RFLNLSSTG-IRVVKTCI--PQTLEVLDVSNNN-LDSFSLFLPRLQEL 456

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 15  SSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSI 73
           ++ + + DL FN +      DL    +L  LILK ++    +  +   S   LE + LS 
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSD 83

Query: 74  NRFISSIPESLGKLLKLHYLDLSKNQF 100
           N   S      G L  L YL+L  N +
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPY 110

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 12/118 (10%)

Query: 2   NNSTGDIPCEIGKS-SHLHAFDLLFN---HLFVEIPNDLGKLNSLTKLILKWNQFTGRLP 57
           N+    +PC   +    L   DL  N     +++     G   SL  L+L  N     + 
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQ 377

Query: 58  PEISSF---IKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQ---FFQELPKELE 109
                      L  + +S N     +P+S     K+ +L+LS          +P+ LE
Sbjct: 378 KTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLE 434

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 1/93 (1%)

Query: 8   IPCEIGKSSHLHAFDLLFNHLFVEIP-NDLGKLNSLTKLILKWNQFTGRLPPEISSFIKL 66
           +       ++L    +     F EI   D   L SL +L +K           + S   +
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174

Query: 67  EDIGLSINRFISSIPESLGKLLKLHYLDLSKNQ 99
             + L ++     +      L  + YL+L    
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 6/120 (5%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
                D+         +    +  + +F+   +    L SL  L L  N          +
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355

Query: 62  SFI---KLEDIGLSINRF--ISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
                  L+ + LS N    +    E L  L  L  LD+S+N  F  +P   +   ++  
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRF 414

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSIN 74
           S+L   +L   +L  EIP +L  L  L +L L  N  +  + P      + L+ + +  +
Sbjct: 185 SNLRYLNLAMCNL-REIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQS 241

Query: 75  RFISSIPE-SLGKLLKLHYLDLSKNQFFQELPKEL 108
           + I  I   +   L  L  ++L+ N     LP +L
Sbjct: 242 Q-IQVIERNAFDNLQSLVEINLAHNN-LTLLPHDL 274

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 16  SHLHAFDLLFNHLFVEIPND-LGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSIN 74
             L   DL        I       L++L  L L          P ++  IKL+++ LS N
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGN 217

Query: 75  RFISSIPE-SLGKLLKLHYLDLSKNQ 99
             +S+I   S   L+ L  L + ++Q
Sbjct: 218 H-LSAIRPGSFQGLMHLQKLWMIQSQ 242

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.1 bits (94), Expect = 4e-05
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 13/109 (11%)

Query: 7   DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIK 65
           ++P  I  S++    +L  N + +   N    L  L  L L  N     +     +    
Sbjct: 57  EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLAN 113

Query: 66  LEDIGLSINRFISSIPE-SLGKLLKLHYLDLSKNQF-------FQELPK 106
           L  + L  NR +++IP  +   L KL  L L  N         F  +P 
Sbjct: 114 LNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSIN 74
            HL    L  NH+          L +L  L L  N+ T  +P        KL+++ L  N
Sbjct: 88  RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNN 146

Query: 75  RFISSIPESL-GKLLKLHYLDLSKNQFFQELP 105
             I SIP     ++  L  LDL + +    + 
Sbjct: 147 P-IESIPSYAFNRIPSLRRLDLGELKRLSYIS 177

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 13/109 (11%)

Query: 7   DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIK 65
           ++P  I   S+    +L+ N++ +   +    L+ L  L L  N    ++     +    
Sbjct: 68  EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLAS 124

Query: 66  LEDIGLSINRFISSIP-ESLGKLLKLHYLDLSKNQF-------FQELPK 106
           L  + L  N  ++ IP  +   L KL  L L  N         F  +P 
Sbjct: 125 LNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE-ISSFIKLEDIGLSIN 74
            +L   +L   ++  ++P +L  L  L +L +  N F   + P        L+ + +  +
Sbjct: 196 FNLKYLNLGMCNI-KDMP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNS 252

Query: 75  RFISSIPE-SLGKLLKLHYLDLSKNQFFQELPKEL 108
           + +S I   +   L  L  L+L+ N     LP +L
Sbjct: 253 Q-VSLIERNAFDGLASLVELNLAHNN-LSSLPHDL 285

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 5/86 (5%)

Query: 16  SHLHAFDLLFNHLFVEIPND-LGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSIN 74
             L   DL        I       L +L  L L          P ++  + LE++ +S N
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGN 228

Query: 75  RFISSIPE-SLGKLLKLHYLDLSKNQ 99
                I   S   L  L  L +  +Q
Sbjct: 229 H-FPEIRPGSFHGLSSLKKLWVMNSQ 253

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 16  SHLHAFDLLFNHLFVEIPND-LGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSI 73
            HL    L  N +  +I       L SL  L L  N  T  +P        KL ++ L  
Sbjct: 99  HHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRN 156

Query: 74  NRFISSIPE-SLGKLLKLHYLDLSKNQFFQELP 105
           N  I SIP  +  ++  L  LDL + +  + + 
Sbjct: 157 NP-IESIPSYAFNRVPSLMRLDLGELKKLEYIS 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSIN 74
           + L   DL FN + + + ++   L  L  L  + +         +  S   L  + +S  
Sbjct: 78  TSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136

Query: 75  RFISSIPE-SLGKLLKLHYLDLSKNQFFQELPKEL 108
                        L  L  L ++ N F +    ++
Sbjct: 137 H-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 27/105 (25%), Positives = 36/105 (34%), Gaps = 10/105 (9%)

Query: 16  SHLHAFDLLFNHLFVEIPND-LGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSI 73
           S L    +  N        D   +L +LT L L   Q   +L P   +S   L+ + +S 
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSH 208

Query: 74  NRFISSIPESLGKLLKLHYLDLSKNQF-------FQELPKELEKV 111
           N F S        L  L  LD S N          Q  P  L  +
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 16  SHLHAFDLLFNHLFVEIP-NDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSI 73
             L+   L  N +   I   DL + + L +L L  NQ    +     S    L ++ L  
Sbjct: 193 ETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDN 250

Query: 74  NRFISSIPESLGKLLKLHYLDLSKNQF 100
           N+ +S +P  L  L  L  + L  N  
Sbjct: 251 NK-LSRVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR 75
            HL+A  L+ N +          L  L KL +  N     +PP +     L ++ +  NR
Sbjct: 78  QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNR 134

Query: 76  FISSIPE-SLGKLLKLHYLDLSKNQ 99
            I  +P+     L  ++ +++  N 
Sbjct: 135 -IRKVPKGVFSGLRNMNCIEMGGNP 158

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 1/86 (1%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSIN 74
           +      L FN++     +    L  L  L L        +  E   +   L  + L  +
Sbjct: 24  NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 75  RFISSIPESLGKLLKLHYLDLSKNQF 100
           +     P++   L  L  L L     
Sbjct: 84  KIYFLHPDAFQGLFHLFELRLYFCGL 109

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 20/88 (22%), Positives = 29/88 (32%)

Query: 14  KSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSI 73
             S +   DL    +F         L  L  L L +N+              L+ + LS 
Sbjct: 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323

Query: 74  NRFISSIPESLGKLLKLHYLDLSKNQFF 101
           N        +   L K+ Y+DL KN   
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 2/86 (2%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSIN 74
             L   +L +N +          L++L  L L +N     L         K+  I L  N
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKN 348

Query: 75  RFISSIPESLGKLLKLHYLDLSKNQF 100
                  ++   L KL  LDL  N  
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNAL 374

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE--ISSFIKLEDIGLSI 73
            +L   DL  + ++   P+    L  L +L L +   +  +  +    +   L  + LS 
Sbjct: 73  PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 74  NRFIS-SIPESLGKLLKLHYLDLSKNQF 100
           N+  S  +  S GKL  L  +D S NQ 
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQI 160

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 11/111 (9%)

Query: 16  SHLHAFDLLFNHLF-VEIPNDLGKLNSLTKLILKWNQFTGRLPPEI---SSFIKLEDIGL 71
             L   DL  N +  + +    GKLNSL  +    NQ    +            L    L
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSL 181

Query: 72  SINRFISSIPESLGKLLK------LHYLDLSKNQFFQELPKELEKVVQLSE 116
           + N   S +    GK +       L  LD+S N +  ++       +  S+
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 8/99 (8%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N  T   P  +   + L   D+  N +     + L KL +L  LI   NQ +      + 
Sbjct: 165 NQVTDLKP--LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISD--ITPLG 218

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100
               L+++ L+ N+ +  I  +L  L  L  LDL+ NQ 
Sbjct: 219 ILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQI 255

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 6/105 (5%)

Query: 11  EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIG 70
            I    +L    L FN++     + +  L  L +L    N+ +      +++   +  + 
Sbjct: 304 PISNLKNLTYLTLYFNNI--SDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLS 359

Query: 71  LSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115
              N+ IS +   L  L ++  L L+   +          V   +
Sbjct: 360 AGHNQ-ISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
            N T  +         +         +  +  + +  LN+LT++    NQ T      + 
Sbjct: 34  TNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTD--ITPLK 87

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQ 99
           +  KL DI ++ N+ I+ I   L  L  L  L L  NQ
Sbjct: 88  NLTKLVDILMNNNQ-IADITP-LANLTNLTGLTLFNNQ 123

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           +N   DI   + K ++L +     N +    P  LG L +L +L L  NQ        ++
Sbjct: 186 SNKVSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLA 240

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100
           S   L D+ L+ N+  +  P  L  L KL  L L  NQ 
Sbjct: 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 11  EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIG 70
            +   + L   +L  N L  E  + +  L +LT L L +N  +      +SS  KL+ + 
Sbjct: 282 PLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLF 337

Query: 71  LSINRFISSIPESLGKLLKLHYLDLSKNQF 100
              N+ +S +   L  L  +++L    NQ 
Sbjct: 338 FYNNK-VSDVSS-LANLTNINWLSAGHNQI 365

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 7/99 (7%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
            N   DI   +   ++L   DL  N +    P  L  L  LT+L L  NQ +      ++
Sbjct: 230 GNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLA 284

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100
               L ++ L+ N+ +  I   +  L  L YL L  N  
Sbjct: 285 GLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNNI 321

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           NN   DI   +   + L    +  N +       L  L +LT L L  NQ T      + 
Sbjct: 77  NNQLTDIT-PLKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLFNNQITD--IDPLK 131

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQ 99
           +   L  + LS N  IS I  +L  L  L  L      
Sbjct: 132 NLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGNQV 167

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 22  DLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSI 80
            L  N +      D+  L+ L  L L  N+    L   +      LE + +S NR + +I
Sbjct: 58  SLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR-LQNI 115

Query: 81  PESLGKLLKLHYLDLSKNQF 100
                 +  L +LDLS N F
Sbjct: 116 S--CCPMASLRHLDLSFNDF 133

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 7/103 (6%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHL--FVEIPNDL--GKLNSLTKLILKWNQFTGRLP 57
            N   +       + ++ + + L   L        D       S+  L L  N  TG + 
Sbjct: 386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445

Query: 58  PEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100
             +    K++ + L  NR I SIP+ +  L  L  L+++ NQ 
Sbjct: 446 RCLPP--KVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQL 485

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 22  DLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSI 80
           DL  N L         +L SLT+L L  N+    LP  + +    L  + LS N+ + S+
Sbjct: 34  DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQ-LQSL 91

Query: 81  PESL-GKLLKLHYLDLSKNQFFQELPK 106
           P  +  KL +L  L L+ NQ  Q LP 
Sbjct: 92  PNGVFDKLTQLKELALNTNQ-LQSLPD 117

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 22  DLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSI 80
           ++  N++     +D+  L+ L  LI+  N+    L   +     +LE + LS N+ +  I
Sbjct: 27  NISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNK-LVKI 84

Query: 81  PESLGKLLKLHYLDLSKNQF 100
                  + L +LDLS N F
Sbjct: 85  S--CHPTVNLKHLDLSFNAF 102

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.2 bits (94), Expect = 5e-05
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 16  SHLHAFDLLFNHL-FVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSIN 74
             L   D+  N + + E   D     SL  L +  N  T  +   +    +++ + L  N
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSN 431

Query: 75  RFISSIPESLGKLLKLHYLDLSKNQ 99
           + I SIP+ + KL  L  L+++ NQ
Sbjct: 432 K-IKSIPKQVVKLEALQELNVASNQ 455

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 10/117 (8%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
                 + C   K S     D   N L   +  + G L  L  LIL+ NQ    L     
Sbjct: 311 GTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAE 368

Query: 62  SF---IKLEDIGLSINRFISSIPESL-GKLLKLHYLDLSKNQF----FQELPKELEK 110
                  L+ + +S N       +        L  L++S N      F+ LP  ++ 
Sbjct: 369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKV 425

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 22  DLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSI 80
            L  N + V  P        L ++ L  NQ +  L P+       L  + L  N+ I+ +
Sbjct: 38  RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK-ITEL 95

Query: 81  PESL-GKLLKLHYLDLSKNQFFQELPK 106
           P+SL   L  L  L L+ N+    L  
Sbjct: 96  PKSLFEGLFSLQLLLLNANK-INCLRV 121

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 16  SHLHAFDLLFNHLFVEIPNDL-GKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSI 73
             L   DL  N +  E+  D    L SL  L+L  N+ T  LP  +      L+ + L+ 
Sbjct: 56  KKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNA 113

Query: 74  NRFISSIPE-SLGKLLKLHYLDLSKNQFFQELPKE 107
           N+ I+ +   +   L  L+ L L  N+  Q + K 
Sbjct: 114 NK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKG 146

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.7 bits (93), Expect = 5e-05
 Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 3/86 (3%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSIN 74
           +H++  DL  N +         +L  L  L ++       +          L  + L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 75  RFISSIPES-LGKLLKLHYLDLSKNQ 99
           +    +       L  L  L L++  
Sbjct: 90  Q-FLQLETGAFNGLANLEVLTLTQCN 114

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 14  KSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLS 72
           ++S +   DL  + +F  + +       L +L L  N+   ++          L  + LS
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLS 331

Query: 73  INRFISSIPE-SLGKLLKLHYLDLSKNQFFQELPKEL 108
            N  + SI       L KL  LDLS N   + L  + 
Sbjct: 332 QNF-LGSIDSRMFENLDKLEVLDLSYNH-IRALGDQS 366

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 33  PNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSIPE-SLGKLLKL 90
            N    L  L KL L  N     +   +  +  KLE + LS N  I ++ + S   L  L
Sbjct: 316 DNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNL 373

Query: 91  HYLDLSKNQ 99
             L L  NQ
Sbjct: 374 KELALDTNQ 382

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 36.6 bits (85), Expect = 8e-04
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 16  SHLHAFDLLFNHLFVEIPND-LGKLNSLTKLILKWNQFTGRLPPEISSFIK---LEDIGL 71
           S L    L +N   +++       L +L  L L      G +    + F     LE + L
Sbjct: 79  SSLIILKLDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSG-NFFKPLTSLEMLVL 136

Query: 72  SINRFISSIPESL-GKLLKLHYLDLSKNQF 100
             N      P S    + + H LDL+ N+ 
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 6/88 (6%)

Query: 22  DLLFNHLFVEIPNDL-GKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISS 79
            L  N   V     +  KL  L K+    N+ T  +          + +I L+ NR + +
Sbjct: 38  RLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNR-LEN 95

Query: 80  IPESL-GKLLKLHYLDLSKNQFFQELPK 106
           +   +   L  L  L L  N+    +  
Sbjct: 96  VQHKMFKGLESLKTLMLRSNR-ITCVGN 122

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 36.2 bits (84), Expect = 9e-04
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 38  KLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSIPE-SLGKLLKLHYLDL 95
             + + +++L  N+    +  ++      L+ + L  NR I+ +   S   L  +  L L
Sbjct: 79  GASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSL 136

Query: 96  SKNQF 100
             NQ 
Sbjct: 137 YDNQI 141

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 39.8 bits (93), Expect = 6e-05
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 7   DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIK 65
           +IP ++    +      +   L V           L K+ +  N     +  ++ S+  K
Sbjct: 23  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 66  LEDIGLSINRFISSIPES-LGKLLKLHYLDLSKNQFFQELP 105
           L +I +     +  I       L  L YL +S     + LP
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLP 120

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 36  LGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDL 95
           L  L  L  L L+ N  +  +   +    +LE + L  N+ I+ I   L +L KL  L L
Sbjct: 105 LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSL 160

Query: 96  SKNQ 99
             NQ
Sbjct: 161 EDNQ 164

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 12/95 (12%)

Query: 22  DLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSI 80
           DL  N +     +DL +  +L  L+L  N     +  +  SS   LE + LS N  +S++
Sbjct: 58  DLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY-LSNL 115

Query: 81  PESL-GKLLKLHYLDLSKNQ--------FFQELPK 106
             S    L  L +L+L  N          F  L K
Sbjct: 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 16/93 (17%), Positives = 39/93 (41%), Gaps = 4/93 (4%)

Query: 26  NHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE-ISSFIKLEDIGLSINRFISSI-PES 83
               ++  + L    +LT+L ++  Q    L    +    +L ++ +  +  +  + P++
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDA 75

Query: 84  LGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116
                +L  L+LS N   + L  +  + + L E
Sbjct: 76  FHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQE 107

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 38  KLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSIPESL-GKLLKLHYLDL 95
           KL +L +L+L  NQ    LP  +      L  + L+ N+ + S+P+ +  KL  L  LDL
Sbjct: 107 KLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDL 164

Query: 96  SKNQFFQELPK 106
           S NQ  Q LP+
Sbjct: 165 SYNQ-LQSLPE 174

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 13/80 (16%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 22  DLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSI 80
            L+  HL     +    L +++++ +  +    +L      +  K+  I +   R ++ I
Sbjct: 37  KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96

Query: 81  P-ESLGKLLKLHYLDLSKNQ 99
             ++L +L  L +L +    
Sbjct: 97  DPDALKELPLLKFLGIFNTG 116

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 6/101 (5%)

Query: 12  IGKSSHLHAFDLLFNHLFVEIPNDL--GKLNSLTKLILKWNQFTGRLPPEISSFIKLEDI 69
           +  +      ++  N     IP +   G  N    L L  N FT  +     +  KL+ +
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAV 184

Query: 70  GLSINRFISSIPESL--GKLLKLHYLDLSKNQFFQELPKEL 108
            L+ N++++ I +    G       LD+S+      LP + 
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 36.1 bits (84), Expect = 8e-04
 Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 41  SLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSIPE-SLGKLLKLHYLDLSKN 98
           S   L L        +P    S+   +  I +SI+  +  +   S   L K+ ++++   
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 99  QFFQELPKE 107
           +    +  +
Sbjct: 91  RNLTYIDPD 99

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 38  KLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSIPESL-GKLLKLHYLDL 95
           +L  L KL LK NQ T  + P        ++++ L  N+ I  I   +   L +L  L+L
Sbjct: 52  RLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNL 109

Query: 96  SKNQ 99
             NQ
Sbjct: 110 YDNQ 113

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 43  TKLILKWNQFTGRLPPE--ISSFIKLEDIGLSINRFISSIPESL-GKLLKLHYLDLSKNQ 99
           T+L+L  N+   R+  +        L  + L  N+ ++ I  +       +  L L +N+
Sbjct: 32  TELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENK 89

Query: 100 FFQELPK 106
             +E+  
Sbjct: 90  -IKEISN 95

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 7/93 (7%)

Query: 15  SSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS----SFIKLEDIG 70
              L    +   H        +    +L+ L L  N   G      +     F  L+ + 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 71  LSINRFIS---SIPESLGKLLKLHYLDLSKNQF 100
           L      +            ++L  LDLS N  
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 19/94 (20%), Positives = 27/94 (28%), Gaps = 5/94 (5%)

Query: 17  HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFI-KLEDIGLSINR 75
            L   +                   L  L L  N            +  +L  + LS   
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264

Query: 76  FISSIPESLGKLLKLHYLDLSKNQFFQELPKELE 109
            +  +P+ L    KL  LDLS N+     P   E
Sbjct: 265 -LKQVPKGLPA--KLSVLDLSYNR-LDRNPSPDE 294

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 22  DLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSI 80
           DL  N L         +L  L  L L  N+    LP  I      LE + ++ N+ + ++
Sbjct: 43  DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNK-LQAL 100

Query: 81  PESL-GKLLKLHYLDLSKNQFFQELP 105
           P  +  +L+ L  L L +NQ  + LP
Sbjct: 101 PIGVFDQLVNLAELRLDRNQ-LKSLP 125

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 38  KLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSIPESL-GKLLKLHYLDL 95
            L+ L+ LIL  N     L     S    L+ +       ++S+     G L  L  L++
Sbjct: 74  SLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNV 131

Query: 96  SKNQFFQELP 105
           + N   Q   
Sbjct: 132 AHNL-IQSFK 140

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 17/80 (21%), Positives = 23/80 (28%), Gaps = 4/80 (5%)

Query: 22  DLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSI 80
           DL FN L             L  L L   +    +      S   L  + L+ N  I S+
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP-IQSL 91

Query: 81  PESL-GKLLKLHYLDLSKNQ 99
                  L  L  L   +  
Sbjct: 92  ALGAFSGLSSLQKLVAVETN 111

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 36.1 bits (84), Expect = 8e-04
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 8/84 (9%)

Query: 22  DLLFNHL-FVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIG----LSINR 75
           ++  N +   ++P     L +L  L L  N+    +         ++  +     LS+N 
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 76  FISSIPESLGKLLKLHYLDLSKNQ 99
            ++ I     K ++L  L L  NQ
Sbjct: 189 -MNFIQPGAFKEIRLKELALDTNQ 211

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	116
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.81
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.8
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.78
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.77
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.74
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.73
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.71
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.71
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.71
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.69
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.69
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.69
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.68
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.67
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.67
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.67
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.67
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.67
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.67
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.66
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.66
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.65
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.65
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.65
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.64
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.64
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.64
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.64
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.63
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.63
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.62
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.62
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.62
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.62
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.62
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.62
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.61
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.61
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.6
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.6
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.6
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.59
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.59
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.58
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.58
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.58
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.58
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.58
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.56
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.56
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.56
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.56
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.56
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.56
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.55
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.55
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.54
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.54
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.53
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.53
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.53
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.52
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.52
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.51
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.51
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.5
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.5
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.47
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.47
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.46
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.44
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.44
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.44
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.43
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.43
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.41
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.41
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.41
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.41
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.4
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.4
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.38
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.36
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.3
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.3
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.28
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.28
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.2
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.19
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.98
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.9
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.82
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.79
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.77
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.75
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.71
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.65
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.54
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.53
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.52
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.45
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.44
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.38
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.95
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.85
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.85
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.73
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.42
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.36
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.02
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.98
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.97
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.95
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.94
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.91
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.61
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.85

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.81  E-value=1.8e-19  Score=113.41  Aligned_cols=114  Identities=21%  Similarity=0.308  Sum_probs=87.6

Q ss_pred             Ccccc--ccCcCccCCcccceeeccc-cccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeecc
Q 035618            2 NNSTG--DIPCEIGKSSHLHAFDLLF-NHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFIS   78 (116)
Q Consensus         2 n~~~~--~~~~~~~~l~~L~~l~l~~-n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~   78 (116)
                      |.+.+  .+|..+..+++|+.|++++ |.+.+.+|..+..+++|+++++++|.+.+.+|..+..+++|+++++++|.+.+
T Consensus        60 ~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  139 (313)
T 1ogq_A           60 LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG  139 (313)
T ss_dssp             CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             CCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC
Confidence            45555  6777788888888888884 77767777778788888888888888877777777778888888888888777


Q ss_pred             CCcHHHhcccCCCEEecccCccccccchHHhhhc-CCC
Q 035618           79 SIPESLGKLLKLHYLDLSKNQFFQELPKELEKVV-QLS  115 (116)
Q Consensus        79 ~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~-~L~  115 (116)
                      .+|..+..+++|+++++++|.+++.+|..++.++ .|+
T Consensus       140 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~  177 (313)
T 1ogq_A          140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT  177 (313)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred             cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc
Confidence            7777777788888888888888767777777766 544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.80  E-value=3.7e-19  Score=123.02  Aligned_cols=98  Identities=27%  Similarity=0.429  Sum_probs=48.4

Q ss_pred             cCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcc
Q 035618            8 IPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKL   87 (116)
Q Consensus         8 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~   87 (116)
                      .|..+..+++|+.|++++|.+++.+|..+..++.|+.+++++|.+.+.+|..++.+++|+.|++++|+++|.+|..+..+
T Consensus       624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l  703 (768)
T 3rgz_A          624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL  703 (768)
T ss_dssp             CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence            33344444444445555554444444444445555555555555544445545455555555555555544455444455


Q ss_pred             cCCCEEecccCccccccc
Q 035618           88 LKLHYLDLSKNQFFQELP  105 (116)
Q Consensus        88 ~~l~~l~l~~n~l~~~~p  105 (116)
                      ++|+.+++++|.++|.+|
T Consensus       704 ~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          704 TMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             CCCSEEECCSSEEEEECC
T ss_pred             CCCCEEECcCCcccccCC
Confidence            555555555555544444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.78  E-value=5.1e-19  Score=111.37  Aligned_cols=111  Identities=30%  Similarity=0.503  Sum_probs=85.3

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |++.+.+|..+..+++|++|++++|.+++..|..+..+++|+++++++|.+.+.+|..+..+++|+.+++++|.+.+.+|
T Consensus        87 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  166 (313)
T 1ogq_A           87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP  166 (313)
T ss_dssp             TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred             CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC
Confidence            56666777778888888888888888866777777788888888888888877777777778888888888887777777


Q ss_pred             HHHhccc-CCCEEecccCccccccchHHhhhc
Q 035618           82 ESLGKLL-KLHYLDLSKNQFFQELPKELEKVV  112 (116)
Q Consensus        82 ~~~~~~~-~l~~l~l~~n~l~~~~p~~~~~l~  112 (116)
                      ..+..+. .|+.+++++|.+.+.+|..+..++
T Consensus       167 ~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~  198 (313)
T 1ogq_A          167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN  198 (313)
T ss_dssp             GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred             HHHhhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence            7777776 777777777777667776666554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.77  E-value=1.4e-18  Score=110.08  Aligned_cols=108  Identities=19%  Similarity=0.238  Sum_probs=85.8

Q ss_pred             ccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhc
Q 035618            7 DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGK   86 (116)
Q Consensus         7 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~   86 (116)
                      .+|..+..+++|+.|++++|.+. .+|+.+..+++|+.+++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..
T Consensus       197 ~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~  275 (328)
T 4fcg_A          197 SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR  275 (328)
T ss_dssp             CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred             cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc
Confidence            56667777778888888888774 46666777888888888887777777777888888888888888777788878888


Q ss_pred             ccCCCEEecccCccccccchHHhhhcCCC
Q 035618           87 LLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        87 ~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      +++|+.+++++|.+.+.+|..++.++.|+
T Consensus       276 l~~L~~L~L~~n~~~~~iP~~l~~L~~L~  304 (328)
T 4fcg_A          276 LTQLEKLDLRGCVNLSRLPSLIAQLPANC  304 (328)
T ss_dssp             CTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred             CCCCCEEeCCCCCchhhccHHHhhccCce
Confidence            88888888888888888888888887764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.76  E-value=2.7e-18  Score=118.74  Aligned_cols=111  Identities=38%  Similarity=0.587  Sum_probs=53.3

Q ss_pred             cccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHH
Q 035618            4 STGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPES   83 (116)
Q Consensus         4 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~   83 (116)
                      +.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.+++++|.+.+.+|..+..+++|+.+++++|++.+.+|..
T Consensus       430 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~  509 (768)
T 3rgz_A          430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW  509 (768)
T ss_dssp             EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred             ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH
Confidence            33344444444444444444444444444444444444444444444444444444444555555555555544444544


Q ss_pred             HhcccCCCEEecccCccccccchHHhhhcCC
Q 035618           84 LGKLLKLHYLDLSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        84 ~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L  114 (116)
                      +..+++|+.+++++|.+++.+|..++.+++|
T Consensus       510 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  540 (768)
T 3rgz_A          510 IGRLENLAILKLSNNSFSGNIPAELGDCRSL  540 (768)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred             HhcCCCCCEEECCCCcccCcCCHHHcCCCCC
Confidence            5555555555555555544555544444444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=2.6e-18  Score=103.46  Aligned_cols=113  Identities=21%  Similarity=0.238  Sum_probs=92.8

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch-hhhccCCCCeEEeeceeeccCC
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSINRFISSI   80 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~   80 (116)
                      |.+.+..+..+..+++|+.|++++|.+.+..|..|..+++|+.+++++|.+. .+|. .+..+++|+.|++++|.+.+..
T Consensus        42 n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~  120 (220)
T 2v9t_B           42 NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLR  120 (220)
T ss_dssp             SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeC
Confidence            5555555667888899999999999987777888888999999999999998 5665 4678899999999999988777


Q ss_pred             cHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           81 PESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      +..|..+++|+.|++++|.+++..+..+..+++|+
T Consensus       121 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  155 (220)
T 2v9t_B          121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ  155 (220)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             HHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC
Confidence            78888899999999999999666666677777665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=2.8e-18  Score=103.31  Aligned_cols=114  Identities=18%  Similarity=0.137  Sum_probs=91.1

Q ss_pred             CccccccC-cCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC
Q 035618            2 NNSTGDIP-CEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI   80 (116)
Q Consensus         2 n~~~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~   80 (116)
                      |.+.+..+ ..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..
T Consensus        42 N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  121 (220)
T 2v70_A           42 NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG  121 (220)
T ss_dssp             SCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC
T ss_pred             CcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeEC
Confidence            44444434 34678889999999999886666667888899999999999988555556888889999999999888777


Q ss_pred             cHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           81 PESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      |..+..+++|+.|++++|.+++..|..|..+++|+
T Consensus       122 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  156 (220)
T 2v70_A          122 NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS  156 (220)
T ss_dssp             TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred             HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence            77888888999999999999777788888877765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.74  E-value=1.1e-17  Score=95.05  Aligned_cols=112  Identities=26%  Similarity=0.214  Sum_probs=94.1

Q ss_pred             Cccc-cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccC-
Q 035618            2 NNST-GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISS-   79 (116)
Q Consensus         2 n~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-   79 (116)
                      |.+. +.+|..+..+++|+.|++++|.+.+.  ..+..+++|+.+++++|.+.+.+|..+..+++|+.+++++|.+.+. 
T Consensus        27 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~  104 (149)
T 2je0_A           27 SRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS  104 (149)
T ss_dssp             CBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHH
T ss_pred             CcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChH
Confidence            5555 57888889999999999999998655  6788899999999999999966888888899999999999998652 


Q ss_pred             CcHHHhcccCCCEEecccCccccccc---hHHhhhcCCC
Q 035618           80 IPESLGKLLKLHYLDLSKNQFFQELP---KELEKVVQLS  115 (116)
Q Consensus        80 ~~~~~~~~~~l~~l~l~~n~l~~~~p---~~~~~l~~L~  115 (116)
                      .+..+..+++|+.+++++|.+++..+   ..++.+++|+
T Consensus       105 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  143 (149)
T 2je0_A          105 TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT  143 (149)
T ss_dssp             HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred             HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence            23678899999999999999966544   4688888876

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=1.6e-17  Score=100.57  Aligned_cols=113  Identities=22%  Similarity=0.216  Sum_probs=82.5

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|++. .+|
T Consensus        50 n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp  128 (229)
T 3e6j_A           50 NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELP  128 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred             CccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccC
Confidence            5666666777788888888888888884444445677888888888888887433345677888888888888875 677


Q ss_pred             HHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           82 ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      ..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus       129 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  162 (229)
T 3e6j_A          129 RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT  162 (229)
T ss_dssp             TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cccccCCCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence            7778888888888888888554445566666664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.74  E-value=1.5e-17  Score=101.75  Aligned_cols=98  Identities=21%  Similarity=0.171  Sum_probs=45.2

Q ss_pred             ccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcH
Q 035618            3 NSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPE   82 (116)
Q Consensus         3 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~   82 (116)
                      .+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..+.
T Consensus        46 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  125 (251)
T 3m19_A           46 GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG  125 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChh
Confidence            33344444455555555555555555444444444455555555555555422223344444444444444444332222


Q ss_pred             HHhcccCCCEEecccCcc
Q 035618           83 SLGKLLKLHYLDLSKNQF  100 (116)
Q Consensus        83 ~~~~~~~l~~l~l~~n~l  100 (116)
                      .+..+++|+.|++++|.+
T Consensus       126 ~~~~l~~L~~L~Ls~N~l  143 (251)
T 3m19_A          126 VFDRLTKLKELRLNTNQL  143 (251)
T ss_dssp             TTTTCTTCCEEECCSSCC
T ss_pred             HhccCCcccEEECcCCcC
Confidence            334444444444444444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.73  E-value=5.9e-18  Score=107.20  Aligned_cols=99  Identities=22%  Similarity=0.364  Sum_probs=63.8

Q ss_pred             CcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEe
Q 035618           15 SSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLD   94 (116)
Q Consensus        15 l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~   94 (116)
                      +++|+.|++++|.++ .+|..+..+++|+.+++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+
T Consensus       182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  259 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI  259 (328)
T ss_dssp             STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred             CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence            566666666666653 55555666666666666666666 4555666666666666666666666666666666677777


Q ss_pred             cccCccccccchHHhhhcCCC
Q 035618           95 LSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        95 l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      +++|.+.+.+|..++.+++|+
T Consensus       260 L~~n~~~~~~p~~~~~l~~L~  280 (328)
T 4fcg_A          260 LKDCSNLLTLPLDIHRLTQLE  280 (328)
T ss_dssp             CTTCTTCCBCCTTGGGCTTCC
T ss_pred             CCCCCchhhcchhhhcCCCCC
Confidence            776666666666666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.73  E-value=2.1e-17  Score=101.06  Aligned_cols=115  Identities=23%  Similarity=0.204  Sum_probs=92.2

Q ss_pred             CCccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC
Q 035618            1 MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI   80 (116)
Q Consensus         1 ~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~   80 (116)
                      +|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..
T Consensus        68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  147 (251)
T 3m19_A           68 YNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP  147 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence            35666667777888999999999999997666667788999999999999998433445778899999999999987655


Q ss_pred             cHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           81 PESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      +..+..+++|+.|++++|.+++..+..+..++.|+
T Consensus       148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  182 (251)
T 3m19_A          148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ  182 (251)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence            55788889999999999999666666777777765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.71  E-value=5.1e-17  Score=96.80  Aligned_cols=114  Identities=23%  Similarity=0.162  Sum_probs=80.1

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |++.+..+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|.+.+..+..+..+++|+.+++++|.+.+..+
T Consensus        38 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  117 (208)
T 2o6s_A           38 NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD  117 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCH
Confidence            45554445556778888888888888855444456678888888888888874333446778888888888888765555


Q ss_pred             HHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           82 ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      ..+..+++|+.+++++|.+++..+..+..+++|+
T Consensus       118 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~  151 (208)
T 2o6s_A          118 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  151 (208)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             hHhccCCcCCEEECCCCccceeCHHHhccCCCcc
Confidence            5577788888888888888554444566666664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.71  E-value=1.2e-17  Score=113.65  Aligned_cols=107  Identities=19%  Similarity=0.275  Sum_probs=61.6

Q ss_pred             cCcCccCCcccceeeccccccccc-----------------cchhhc--CCCCCCeEecccCcceecCchhhhccCCCCe
Q 035618            8 IPCEIGKSSHLHAFDLLFNHLFVE-----------------IPNDLG--KLNSLTKLILKWNQFTGRLPPEISSFIKLED   68 (116)
Q Consensus         8 ~~~~~~~l~~L~~l~l~~n~~~~~-----------------~~~~~~--~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~   68 (116)
                      +|..+.++++|+.|++++|.+++.                 +|..+.  .+++|+++++++|.+.+.+|..+..+++|+.
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            555555666666666666665443                 555555  5666666666666555555655556666666


Q ss_pred             EEeecee-ecc-CCcHHHhcc------cCCCEEecccCccccccch--HHhhhcCCC
Q 035618           69 IGLSINR-FIS-SIPESLGKL------LKLHYLDLSKNQFFQELPK--ELEKVVQLS  115 (116)
Q Consensus        69 l~l~~n~-~~~-~~~~~~~~~------~~l~~l~l~~n~l~~~~p~--~~~~l~~L~  115 (116)
                      |++++|+ +.+ .+|..+..+      ++|+.+++++|.++ .+|.  .++.+++|+
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~  333 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLG  333 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCC
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCC
Confidence            6666665 554 455555544      55666666666663 5555  555555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.71  E-value=4.6e-17  Score=100.62  Aligned_cols=114  Identities=24%  Similarity=0.198  Sum_probs=71.7

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  174 (272)
T 3rfs_A           95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE  174 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence            44444444456666777777777777654444445667777777777777663333345667777777777777665544


Q ss_pred             HHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           82 ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      ..+..+++|+.+++++|.+++..|..+..+++|+
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (272)
T 3rfs_A          175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  208 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence            5566677777777777777555555556666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=2.3e-17  Score=97.46  Aligned_cols=92  Identities=24%  Similarity=0.274  Sum_probs=48.5

Q ss_pred             ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH   91 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~   91 (116)
                      +..+++|+.|++++|.+++..|..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|++.+..|..+..+++|+
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  129 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence            44555555555555555444445555555555555555555543344455555555555555555544444555555555


Q ss_pred             EEecccCccccc
Q 035618           92 YLDLSKNQFFQE  103 (116)
Q Consensus        92 ~l~l~~n~l~~~  103 (116)
                      .+++++|.+.+.
T Consensus       130 ~L~L~~N~l~c~  141 (192)
T 1w8a_A          130 SLNLASNPFNCN  141 (192)
T ss_dssp             EEECTTCCBCCS
T ss_pred             EEEeCCCCccCc
Confidence            555555555444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.71  E-value=7.1e-17  Score=93.31  Aligned_cols=112  Identities=27%  Similarity=0.217  Sum_probs=92.2

Q ss_pred             Cccc-cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC
Q 035618            2 NNST-GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI   80 (116)
Q Consensus         2 n~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~   80 (116)
                      |.+. +.+|..+..+++|+.|++++|.+.+.  ..+..+++|+.+++++|.+.+..|..+..+++|+.+++++|.+.+..
T Consensus        34 n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  111 (168)
T 2ell_A           34 CKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIS  111 (168)
T ss_dssp             CBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSG
T ss_pred             CCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcch
Confidence            4554 57888889999999999999998554  67888999999999999998667878888999999999999986532


Q ss_pred             -cHHHhcccCCCEEecccCccccccc---hHHhhhcCCC
Q 035618           81 -PESLGKLLKLHYLDLSKNQFFQELP---KELEKVVQLS  115 (116)
Q Consensus        81 -~~~~~~~~~l~~l~l~~n~l~~~~p---~~~~~l~~L~  115 (116)
                       +..+..+++|+.+++++|.+++..+   ..+..+++|+
T Consensus       112 ~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  150 (168)
T 2ell_A          112 TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT  150 (168)
T ss_dssp             GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred             hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence             2678899999999999999955444   3788888775

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.71  E-value=7.5e-18  Score=114.57  Aligned_cols=106  Identities=21%  Similarity=0.297  Sum_probs=97.6

Q ss_pred             cCcCcc--CCcccceeeccccccccccchhhcCCCCCCeEecccCc-cee-cCchhhhcc------CCCCeEEeeceeec
Q 035618            8 IPCEIG--KSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQ-FTG-RLPPEISSF------IKLEDIGLSINRFI   77 (116)
Q Consensus         8 ~~~~~~--~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~-~~~-~~~~~~~~~------~~L~~l~l~~n~~~   77 (116)
                      +|..+.  .+++|+.|++++|.+.+.+|..+..+++|+.+++++|. +.+ .+|..++.+      ++|+.+++++|.+.
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            899999  99999999999999989999999999999999999998 887 789988776      89999999999997


Q ss_pred             cCCcH--HHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           78 SSIPE--SLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        78 ~~~~~--~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                       .+|.  .+..+++|+.+++++|.+.+.+| .++.+++|+
T Consensus       319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~  356 (636)
T 4eco_A          319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA  356 (636)
T ss_dssp             -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred             -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence             8888  89999999999999999987999 788777665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.71  E-value=4.1e-17  Score=106.75  Aligned_cols=114  Identities=21%  Similarity=0.121  Sum_probs=82.0

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..|
T Consensus       285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  364 (455)
T 3v47_A          285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD  364 (455)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT
T ss_pred             ccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh
Confidence            45555566677777888888888888766666677777788888888887775556677777778888888877766666


Q ss_pred             HHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           82 ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      ..+..+++|+.+++++|.+++..+..+..+++|+
T Consensus       365 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  398 (455)
T 3v47_A          365 QSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ  398 (455)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             hhccccccccEEECCCCccccCCHhHhccCCccc
Confidence            6777777788888888877554444556666654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.70  E-value=5.1e-17  Score=109.50  Aligned_cols=114  Identities=18%  Similarity=0.144  Sum_probs=72.7

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |++.+..+..|.++++|++|++++|.+.+..+..|..+++|+++++++|++.+..+..|..+++|+.|++++|++.+..+
T Consensus        62 N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~  141 (635)
T 4g8a_A           62 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN  141 (635)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTT
T ss_pred             CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCCh
Confidence            45555555567777777777777777755445556677777777777777763333456667777777777776654434


Q ss_pred             HHHhcccCCCEEecccCcccc-ccchHHhhhcCCC
Q 035618           82 ESLGKLLKLHYLDLSKNQFFQ-ELPKELEKVVQLS  115 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~-~~p~~~~~l~~L~  115 (116)
                      ..|..+++|+.|++++|.+.+ .+|..++.++.|+
T Consensus       142 ~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  176 (635)
T 4g8a_A          142 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE  176 (635)
T ss_dssp             CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred             hhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence            456666777777777776643 3455566665554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=6.6e-17  Score=95.47  Aligned_cols=109  Identities=28%  Similarity=0.298  Sum_probs=94.1

Q ss_pred             ccccCcCccCCcccceeeccccccccccch-hhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHH
Q 035618            5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPN-DLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPES   83 (116)
Q Consensus         5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~   83 (116)
                      .+.+|..+..  .++.|++++|.+.+..+. .+..+++|+.+++++|.+.+..|..+..+++|+.|++++|++.+..+..
T Consensus        20 l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~   97 (192)
T 1w8a_A           20 LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM   97 (192)
T ss_dssp             CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred             cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHH
Confidence            3567776654  899999999999555443 3888999999999999999777889999999999999999998877777


Q ss_pred             HhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           84 LGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        84 ~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      +..+++|+.|++++|.+++..|..+..+++|+
T Consensus        98 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  129 (192)
T 1w8a_A           98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence            89999999999999999888888888888775

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.69  E-value=6.2e-17  Score=109.12  Aligned_cols=114  Identities=21%  Similarity=0.213  Sum_probs=64.7

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |.+.+..+..+.++++|+.|++++|.+.+..|..|..+++|+++++++|.+.+..|..+..+++|+.|++++|.+.+..+
T Consensus        42 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~  121 (606)
T 3vq2_A           42 NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES  121 (606)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSS
T ss_pred             CCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccc
Confidence            34444444456666666666666666655445555666666666666666654445556666666666666665544333


Q ss_pred             HHHhcccCCCEEecccCcccc-ccchHHhhhcCCC
Q 035618           82 ESLGKLLKLHYLDLSKNQFFQ-ELPKELEKVVQLS  115 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~-~~p~~~~~l~~L~  115 (116)
                      ..+..+++|+++++++|.+.+ .+|..++++++|+
T Consensus       122 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~  156 (606)
T 3vq2_A          122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV  156 (606)
T ss_dssp             SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC
T ss_pred             cccCCCCCCCEEeCCCCcccceechHhHhhcCCCC
Confidence            445555556666666665543 3455555555544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.69  E-value=1.2e-16  Score=99.13  Aligned_cols=110  Identities=21%  Similarity=0.148  Sum_probs=54.9

Q ss_pred             cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHh
Q 035618            6 GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLG   85 (116)
Q Consensus         6 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~   85 (116)
                      +..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..|..+.
T Consensus       119 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  198 (285)
T 1ozn_A          119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR  198 (285)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHcc
Confidence            33344444455555555555554333333344455555555555555422222344555555555555555544455555


Q ss_pred             cccCCCEEecccCccccccchHHhhhcCCC
Q 035618           86 KLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        86 ~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      .+++|+.+++++|.+++..+..+..+++|+
T Consensus       199 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  228 (285)
T 1ozn_A          199 DLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (285)
T ss_dssp             TCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             CcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence            555666666666666444334455555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.69  E-value=1.7e-16  Score=93.83  Aligned_cols=108  Identities=22%  Similarity=0.232  Sum_probs=75.3

Q ss_pred             ccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHH
Q 035618            5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESL   84 (116)
Q Consensus         5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~   84 (116)
                      ...+|..+.  +.++.|++++|.+ ..+|..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..+..|
T Consensus        22 l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f   98 (193)
T 2wfh_A           22 LKVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF   98 (193)
T ss_dssp             CSSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred             CCcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHh
Confidence            345555443  4677888888877 4666777777888888888888774444567777788888888887776666667


Q ss_pred             hcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           85 GKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        85 ~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      ..+++|+.|++++|.+++..+..|..+++|+
T Consensus        99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  129 (193)
T 2wfh_A           99 DGLKSLRLLSLHGNDISVVPEGAFNDLSALS  129 (193)
T ss_dssp             TTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             CCCCCCCEEECCCCCCCeeChhhhhcCcccc
Confidence            7777888888888887544444566666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.68  E-value=2.5e-16  Score=94.74  Aligned_cols=104  Identities=21%  Similarity=0.133  Sum_probs=92.7

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+.+..|..+..+++|+.|++++|++.+..|
T Consensus        67 N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  146 (220)
T 2v70_A           67 NKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP  146 (220)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred             CcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence            56666677789999999999999999977777778899999999999999997668889999999999999999988778


Q ss_pred             HHHhcccCCCEEecccCccccccc
Q 035618           82 ESLGKLLKLHYLDLSKNQFFQELP  105 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~p  105 (116)
                      ..+..+++|+.+++++|.+....+
T Consensus       147 ~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          147 GAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TTTTTCTTCCEEECCSCCEECSGG
T ss_pred             HHhcCCCCCCEEEecCcCCcCCCc
Confidence            889999999999999999976544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.68  E-value=2.2e-16  Score=95.01  Aligned_cols=109  Identities=18%  Similarity=0.210  Sum_probs=93.2

Q ss_pred             ccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHH
Q 035618            5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESL   84 (116)
Q Consensus         5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~   84 (116)
                      ...+|..+.  +.++.|++++|.+.+..+..+..+++|+.+++++|.+.+..|..+..+++|+.|++++|.+....+..|
T Consensus        23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f  100 (220)
T 2v9t_B           23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF  100 (220)
T ss_dssp             CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTT
T ss_pred             cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHc
Confidence            345666554  689999999999976666688899999999999999997778899999999999999999975544567


Q ss_pred             hcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           85 GKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        85 ~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      ..+++|+.|++++|.+.+..|..|..+++|+
T Consensus       101 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  131 (220)
T 2v9t_B          101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLN  131 (220)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence            8999999999999999877788888888775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.67  E-value=2.2e-16  Score=97.57  Aligned_cols=103  Identities=24%  Similarity=0.232  Sum_probs=46.7

Q ss_pred             CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeecc-CCcHHHhcccC
Q 035618           11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFIS-SIPESLGKLLK   89 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~   89 (116)
                      .+..+++|+.|++++|.+.+..+..+..+++|+.+++.+|.+.+..+..+..+++|+.+++++|.+.+ .+|..+..+++
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~  150 (276)
T 2z62_A           71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN  150 (276)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred             HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCC
Confidence            33444444444444444433333334444444444444444442222234444555555555555443 23455555555


Q ss_pred             CCEEecccCccccccchHHhhhcC
Q 035618           90 LHYLDLSKNQFFQELPKELEKVVQ  113 (116)
Q Consensus        90 l~~l~l~~n~l~~~~p~~~~~l~~  113 (116)
                      |+.+++++|.+++..+..+..++.
T Consensus       151 L~~L~Ls~N~l~~~~~~~~~~l~~  174 (276)
T 2z62_A          151 LEHLDLSSNKIQSIYCTDLRVLHQ  174 (276)
T ss_dssp             CCEEECCSSCCCEECGGGGHHHHT
T ss_pred             CCEEECCCCCCCcCCHHHhhhhhh
Confidence            555555555554443444444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.67  E-value=3.5e-16  Score=94.62  Aligned_cols=107  Identities=24%  Similarity=0.352  Sum_probs=92.2

Q ss_pred             ccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCc-hhhhccCCCCeEEeeceeeccCCcHH
Q 035618            5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLP-PEISSFIKLEDIGLSINRFISSIPES   83 (116)
Q Consensus         5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~   83 (116)
                      .+.+|..+.  ++|+.|++++|.+.+..|..+..+++|+.+++++|.+. .++ ..+..+++|+.|++++|.+.+..+..
T Consensus        31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~  107 (229)
T 3e6j_A           31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAV  107 (229)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCCccChhH
Confidence            455666554  78999999999998877888999999999999999998 555 45789999999999999998666666


Q ss_pred             HhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           84 LGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        84 ~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      +..+++|+.|++++|.+ ..+|..+..+++|+
T Consensus       108 ~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~  138 (229)
T 3e6j_A          108 FDRLVHLKELFMCCNKL-TELPRGIERLTHLT  138 (229)
T ss_dssp             TTTCTTCCEEECCSSCC-CSCCTTGGGCTTCS
T ss_pred             hCcchhhCeEeccCCcc-cccCcccccCCCCC
Confidence            88999999999999999 58898888888775

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=3.9e-17  Score=114.21  Aligned_cols=112  Identities=21%  Similarity=0.274  Sum_probs=90.0

Q ss_pred             CccccccCcCccCCcccceeecccccccc-----------------ccchhhc--CCCCCCeEecccCcceecCchhhhc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFV-----------------EIPNDLG--KLNSLTKLILKWNQFTGRLPPEISS   62 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~-----------------~~~~~~~--~l~~l~~l~l~~~~~~~~~~~~~~~   62 (116)
                      |++.+ +|..+.++++|+.|++++|.+++                 .+|+.+.  .+++|+.+++++|.+.+.+|..+..
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            44555 78888888888888888888866                 3777766  8888888888888887788888888


Q ss_pred             cCCCCeEEeecee-ecc-CCcHHHhccc-------CCCEEecccCccccccch--HHhhhcCCC
Q 035618           63 FIKLEDIGLSINR-FIS-SIPESLGKLL-------KLHYLDLSKNQFFQELPK--ELEKVVQLS  115 (116)
Q Consensus        63 ~~~L~~l~l~~n~-~~~-~~~~~~~~~~-------~l~~l~l~~n~l~~~~p~--~~~~l~~L~  115 (116)
                      +++|+.|++++|+ +.+ .+|..+..+.       +|+.|++++|.+. .+|.  .++.+++|+
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~  576 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG  576 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC
Confidence            8888888888887 776 6787777665       8888888888885 7787  788777765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=7e-17  Score=112.96  Aligned_cols=112  Identities=20%  Similarity=0.300  Sum_probs=98.7

Q ss_pred             CCccccccCcCccCCcccceeec-cccccccc------------------------------------------------
Q 035618            1 MNNSTGDIPCEIGKSSHLHAFDL-LFNHLFVE------------------------------------------------   31 (116)
Q Consensus         1 ~n~~~~~~~~~~~~l~~L~~l~l-~~n~~~~~------------------------------------------------   31 (116)
                      +|++.|.+|..++.+++|+.|++ +.|.+++.                                                
T Consensus       332 ~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~  411 (876)
T 4ecn_A          332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN  411 (876)
T ss_dssp             TTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred             cCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence            36788899999999999999999 66644332                                                


Q ss_pred             ----------------------------cchhhcCCCCCCeEecccCccee-----------------cCchhhh--ccC
Q 035618           32 ----------------------------IPNDLGKLNSLTKLILKWNQFTG-----------------RLPPEIS--SFI   64 (116)
Q Consensus        32 ----------------------------~~~~~~~l~~l~~l~l~~~~~~~-----------------~~~~~~~--~~~   64 (116)
                                                  +|..+..+++|+.+++++|.+.+                 .+|+.++  .++
T Consensus       412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~  491 (876)
T 4ecn_A          412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK  491 (876)
T ss_dssp             TTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred             ccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC
Confidence                                        77889999999999999999997                 3888877  999


Q ss_pred             CCCeEEeeceeeccCCcHHHhcccCCCEEecccCc-ccc-ccchHHhhhc
Q 035618           65 KLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQ-FFQ-ELPKELEKVV  112 (116)
Q Consensus        65 ~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~-l~~-~~p~~~~~l~  112 (116)
                      +|+.|++++|.+.+.+|..+..+++|+.|++++|. +++ .+|..++.++
T Consensus       492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~  541 (876)
T 4ecn_A          492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA  541 (876)
T ss_dssp             TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhh
Confidence            99999999999999999999999999999999998 877 8999888776

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.67  E-value=2.7e-16  Score=97.64  Aligned_cols=106  Identities=19%  Similarity=0.117  Sum_probs=44.3

Q ss_pred             CcCccCCcccceeeccccc-cccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcc
Q 035618            9 PCEIGKSSHLHAFDLLFNH-LFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKL   87 (116)
Q Consensus         9 ~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~   87 (116)
                      +..+..+++|+.|++++|. +....+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+
T Consensus        73 ~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  152 (285)
T 1ozn_A           73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL  152 (285)
T ss_dssp             TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccC
Confidence            3334444444444444443 322223334444444444444444443223334444444444444444433322334444


Q ss_pred             cCCCEEecccCccccccchHHhhhcCC
Q 035618           88 LKLHYLDLSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        88 ~~l~~l~l~~n~l~~~~p~~~~~l~~L  114 (116)
                      ++|+.+++++|.+++..+..+..+++|
T Consensus       153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L  179 (285)
T 1ozn_A          153 GNLTHLFLHGNRISSVPERAFRGLHSL  179 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CCccEEECCCCcccccCHHHhcCcccc
Confidence            455555555555432222234444433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.67  E-value=4.7e-16  Score=95.97  Aligned_cols=98  Identities=20%  Similarity=0.206  Sum_probs=48.5

Q ss_pred             ccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcH
Q 035618            3 NSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPE   82 (116)
Q Consensus         3 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~   82 (116)
                      ++.+..+..+..+++|+.|++++|.++...+..+..+++|+++++++|.+....+..+..+++|+.|++++|.+.+..+.
T Consensus        48 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  127 (270)
T 2o6q_A           48 KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR  127 (270)
T ss_dssp             CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHH
Confidence            33333334555566666666666665333223334455566666655555522222344555555555555555443333


Q ss_pred             HHhcccCCCEEecccCcc
Q 035618           83 SLGKLLKLHYLDLSKNQF  100 (116)
Q Consensus        83 ~~~~~~~l~~l~l~~n~l  100 (116)
                      .+..+++|+.|++++|.+
T Consensus       128 ~~~~l~~L~~L~Ls~n~l  145 (270)
T 2o6q_A          128 VFDSLTKLTYLSLGYNEL  145 (270)
T ss_dssp             TTTTCTTCCEEECCSSCC
T ss_pred             HhCcCcCCCEEECCCCcC
Confidence            444445555555555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.66  E-value=2.8e-16  Score=105.96  Aligned_cols=114  Identities=19%  Similarity=0.128  Sum_probs=99.6

Q ss_pred             CCccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeecc-C
Q 035618            1 MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFIS-S   79 (116)
Q Consensus         1 ~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~   79 (116)
                      +|.+.+..|..|..+++|+.|++++|.+.+..|..+..+++|+++++++|.+.+..+..++.+++|+.+++++|.+.+ .
T Consensus        65 ~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  144 (606)
T 3vq2_A           65 RCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK  144 (606)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC
T ss_pred             CCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee
Confidence            366677778889999999999999999977778899999999999999999985444679999999999999999875 6


Q ss_pred             CcHHHhcccCCCEEecccCccccccchHHhhhcCC
Q 035618           80 IPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        80 ~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L  114 (116)
                      +|..+..+++|+++++++|.+++..|..++.++.|
T Consensus       145 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  179 (606)
T 3vq2_A          145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN  179 (606)
T ss_dssp             CCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred             chHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence            78999999999999999999987777777777654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.66  E-value=6.7e-16  Score=95.43  Aligned_cols=114  Identities=18%  Similarity=0.144  Sum_probs=96.7

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|+.+++.+|.+.+..+
T Consensus        38 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  117 (276)
T 2z62_A           38 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN  117 (276)
T ss_dssp             CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTT
T ss_pred             CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCc
Confidence            55666666688899999999999999976666678889999999999999986666788899999999999999876555


Q ss_pred             HHHhcccCCCEEecccCcccc-ccchHHhhhcCCC
Q 035618           82 ESLGKLLKLHYLDLSKNQFFQ-ELPKELEKVVQLS  115 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~-~~p~~~~~l~~L~  115 (116)
                      ..+..+++|+.+++++|.+.+ .+|..+..+++|+
T Consensus       118 ~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~  152 (276)
T 2z62_A          118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE  152 (276)
T ss_dssp             CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred             hhcccCCCCCEEECcCCccceecCchhhccCCCCC
Confidence            568899999999999999965 3688899888876

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.66  E-value=2.9e-16  Score=98.25  Aligned_cols=110  Identities=23%  Similarity=0.204  Sum_probs=67.5

Q ss_pred             CccccccCcCccCCcccceeecccccccc-ccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFV-EIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI   80 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~   80 (116)
                      |.+.+..+..+..+++|+.|++++|.+.+ ..|..+..+++|+.+++++|.+.+..|..+..+++|+.+++++|.+.+..
T Consensus       136 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  215 (306)
T 2z66_A          136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD  215 (306)
T ss_dssp             SCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             CcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence            34444455556666666666666666644 35555666666666666666666544556666666666777666665544


Q ss_pred             cHHHhcccCCCEEecccCccccccchHHhhh
Q 035618           81 PESLGKLLKLHYLDLSKNQFFQELPKELEKV  111 (116)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l  111 (116)
                      +..+..+++|+.+++++|.+.+..|..+..+
T Consensus       216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  246 (306)
T 2z66_A          216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHF  246 (306)
T ss_dssp             SGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred             hhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence            4456666666777777776666555555555

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.65  E-value=6.2e-16  Score=95.59  Aligned_cols=105  Identities=26%  Similarity=0.214  Sum_probs=70.6

Q ss_pred             CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCC
Q 035618           11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKL   90 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l   90 (116)
                      .+..+++|++|++++|.+++..+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|
T Consensus        80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  159 (272)
T 3rfs_A           80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL  159 (272)
T ss_dssp             GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence            46667777777777777755444456667777777777777774334446677777777777777765555556677777


Q ss_pred             CEEecccCccccccchHHhhhcCCC
Q 035618           91 HYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        91 ~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      +.+++++|.+++..+..++.+++|+
T Consensus       160 ~~L~l~~n~l~~~~~~~~~~l~~L~  184 (272)
T 3rfs_A          160 TELDLSYNQLQSLPEGVFDKLTQLK  184 (272)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CEEECCCCCcCccCHHHhcCCccCC
Confidence            7777777777555555556666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.65  E-value=7.8e-16  Score=95.01  Aligned_cols=101  Identities=24%  Similarity=0.294  Sum_probs=45.1

Q ss_pred             cCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch-hhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618           13 GKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSINRFISSIPESLGKLLKLH   91 (116)
Q Consensus        13 ~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~   91 (116)
                      ..+++|+.|++++|.+....+..+..+++|+.+++++|.+. .++. .+..+++|+.+++++|.+.+..+..+..+++|+
T Consensus       106 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  184 (270)
T 2o6q_A          106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK  184 (270)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcC
Confidence            34444444444444443333333444444445555444444 2222 244455555555555554433333344555555


Q ss_pred             EEecccCccccccchHHhhhcCC
Q 035618           92 YLDLSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        92 ~l~l~~n~l~~~~p~~~~~l~~L  114 (116)
                      .+++++|.+.+..+..+..+++|
T Consensus       185 ~L~L~~N~l~~~~~~~~~~l~~L  207 (270)
T 2o6q_A          185 TLKLDNNQLKRVPEGAFDSLEKL  207 (270)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTC
T ss_pred             EEECCCCcCCcCCHHHhccccCC
Confidence            55555555533322334444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.65  E-value=3.1e-16  Score=102.60  Aligned_cols=114  Identities=18%  Similarity=0.174  Sum_probs=79.1

Q ss_pred             CccccccCcCccCCcccceeecccccccccc-chhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEI-PNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI   80 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~-~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~   80 (116)
                      |.+.+..|..+..+++|++|++++|.+.+.+ +..+..+++|+++++++|.+.+..|..+..+++|++|++++|.+.+..
T Consensus        40 n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  119 (455)
T 3v47_A           40 NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV  119 (455)
T ss_dssp             SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHH
T ss_pred             CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccc
Confidence            5555556777777788888888877765444 345677777888888877777656677777777777777777776544


Q ss_pred             cHH--HhcccCCCEEecccCccccccchH-HhhhcCCC
Q 035618           81 PES--LGKLLKLHYLDLSKNQFFQELPKE-LEKVVQLS  115 (116)
Q Consensus        81 ~~~--~~~~~~l~~l~l~~n~l~~~~p~~-~~~l~~L~  115 (116)
                      +..  +..+++|+.|++++|.+.+..|.. +..+++|+
T Consensus       120 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  157 (455)
T 3v47_A          120 LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH  157 (455)
T ss_dssp             HHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred             cCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence            443  667777777777777776655654 56666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.65  E-value=2.3e-16  Score=103.86  Aligned_cols=112  Identities=19%  Similarity=0.229  Sum_probs=61.0

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch-hhhccCCCCeEEeeceeeccCC
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSINRFISSI   80 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~   80 (116)
                      |++.+..+..+..+++|+.|++++|.+.+..|..+..+++|+++++++|.+. .+|. .+..+++|+.|++++|.+.+..
T Consensus        42 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~  120 (477)
T 2id5_A           42 NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILL  120 (477)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCCEEC
T ss_pred             CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCccccCC
Confidence            3444444555666666666666666665555555666666666666666655 3333 3455556666666665555444


Q ss_pred             cHHHhcccCCCEEecccCccccccchHHhhhcCC
Q 035618           81 PESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L  114 (116)
                      +..+..+++|+.|++++|.+.+..|..|..+++|
T Consensus       121 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  154 (477)
T 2id5_A          121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL  154 (477)
T ss_dssp             TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC
T ss_pred             hhHccccccCCEEECCCCccceeChhhccCCCCC
Confidence            4445555555555555555544444444444444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=1.6e-15  Score=102.09  Aligned_cols=109  Identities=23%  Similarity=0.233  Sum_probs=91.8

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC-
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI-   80 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-   80 (116)
                      |.+.+ +|. +..+++|+.|++++|.++ .+|..+..+++|+.+++++|.+. .+| .+..+++|+.|++++|.+.+.. 
T Consensus       451 n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls~N~l~~~~~  525 (567)
T 1dce_A          451 KDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAA  525 (567)
T ss_dssp             SCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSSST
T ss_pred             CCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECCCCCCCCCCC
Confidence            44444 676 899999999999999995 88999999999999999999999 477 8889999999999999998776 


Q ss_pred             cHHHhcccCCCEEecccCccccccch---HHhhhcCCC
Q 035618           81 PESLGKLLKLHYLDLSKNQFFQELPK---ELEKVVQLS  115 (116)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~p~---~~~~l~~L~  115 (116)
                      |..+..+++|+.|++++|.+++..|.   .+..+++|+
T Consensus       526 p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~  563 (567)
T 1dce_A          526 IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS  563 (567)
T ss_dssp             TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred             cHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence            88999999999999999999665442   234466664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.64  E-value=3.9e-16  Score=107.64  Aligned_cols=99  Identities=29%  Similarity=0.391  Sum_probs=52.9

Q ss_pred             ccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhc
Q 035618            7 DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGK   86 (116)
Q Consensus         7 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~   86 (116)
                      .+|..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+.+|+.|++++|.+. .+|..|..
T Consensus       238 ~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~  314 (727)
T 4b8c_D          238 NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGN  314 (727)
T ss_dssp             CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTS
T ss_pred             CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhc
Confidence            44444445555555555555553 45555555555555555555555 45555555555555555555543 44544555


Q ss_pred             ccCCCEEecccCccccccchHH
Q 035618           87 LLKLHYLDLSKNQFFQELPKEL  108 (116)
Q Consensus        87 ~~~l~~l~l~~n~l~~~~p~~~  108 (116)
                      +++|+.|++++|.+++.+|..+
T Consensus       315 l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          315 LCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             CTTCCCEECTTSCCCSHHHHHH
T ss_pred             CCCccEEeCCCCccCCCChHHH
Confidence            5555555555555555555444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.64  E-value=7.9e-16  Score=98.52  Aligned_cols=98  Identities=22%  Similarity=0.128  Sum_probs=50.7

Q ss_pred             ccccccCcCcc-CCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            3 NSTGDIPCEIG-KSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         3 ~~~~~~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      ++.+..+..+. .+++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+.+|+.|++++|.+....+
T Consensus        50 ~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~  129 (361)
T 2xot_A           50 NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR  129 (361)
T ss_dssp             CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH
Confidence            33333333344 55555566665555544444445555555555555555553333345555555555555555544444


Q ss_pred             HHHhcccCCCEEecccCcc
Q 035618           82 ESLGKLLKLHYLDLSKNQF  100 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l  100 (116)
                      ..|..+++|+.|++++|.+
T Consensus       130 ~~~~~l~~L~~L~L~~N~l  148 (361)
T 2xot_A          130 NAFEDMAQLQKLYLSQNQI  148 (361)
T ss_dssp             TTTTTCTTCCEEECCSSCC
T ss_pred             HHhCCcccCCEEECCCCcC
Confidence            4455555555555555555

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.64  E-value=3.6e-16  Score=107.78  Aligned_cols=106  Identities=30%  Similarity=0.390  Sum_probs=91.8

Q ss_pred             ccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhc
Q 035618            7 DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGK   86 (116)
Q Consensus         7 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~   86 (116)
                      ..+..+..++.|+.|++++|.+ ..+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            4567788899999999999999 478888889999999999999999 89999999999999999999987 78999999


Q ss_pred             ccCCCEEecccCccccccchHHhhhcCCCC
Q 035618           87 LLKLHYLDLSKNQFFQELPKELEKVVQLSE  116 (116)
Q Consensus        87 ~~~l~~l~l~~n~l~~~~p~~~~~l~~L~~  116 (116)
                      +++|+.|++++|.+ +.+|..|+.+++|++
T Consensus       292 l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~  320 (727)
T 4b8c_D          292 CFQLKYFYFFDNMV-TTLPWEFGNLCNLQF  320 (727)
T ss_dssp             GTTCSEEECCSSCC-CCCCSSTTSCTTCCC
T ss_pred             CCCCCEEECCCCCC-CccChhhhcCCCccE
Confidence            99999999999999 688988999988863

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.64  E-value=7.2e-16  Score=103.15  Aligned_cols=112  Identities=18%  Similarity=0.135  Sum_probs=50.8

Q ss_pred             ccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcH
Q 035618            3 NSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPE   82 (116)
Q Consensus         3 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~   82 (116)
                      .+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|.+....+..+..+++|+.|++++|.+.+..+.
T Consensus        39 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~  118 (570)
T 2z63_A           39 PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF  118 (570)
T ss_dssp             CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC
T ss_pred             ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCc
Confidence            33344444555555555555555555444344455555555555555555433333444444444444444443322111


Q ss_pred             HHhcccCCCEEecccCcccc-ccchHHhhhcCC
Q 035618           83 SLGKLLKLHYLDLSKNQFFQ-ELPKELEKVVQL  114 (116)
Q Consensus        83 ~~~~~~~l~~l~l~~n~l~~-~~p~~~~~l~~L  114 (116)
                      .+..+++|+++++++|.+.+ .+|..++++++|
T Consensus       119 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L  151 (570)
T 2z63_A          119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL  151 (570)
T ss_dssp             SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred             cccccccccEEecCCCccceecChhhhcccCCC
Confidence            23344444444444444422 234444444333

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.64  E-value=1.4e-15  Score=102.48  Aligned_cols=114  Identities=22%  Similarity=0.176  Sum_probs=96.2

Q ss_pred             CCccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeecc-C
Q 035618            1 MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFIS-S   79 (116)
Q Consensus         1 ~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~   79 (116)
                      +|.+.+..+..|.++++|++|++++|++.+..+..|..+++|+++++++|.+.+..+..++.+++|+.|++++|.+.+ .
T Consensus        85 ~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~  164 (635)
T 4g8a_A           85 RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK  164 (635)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC
T ss_pred             CCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCC
Confidence            366666667789999999999999999966656678899999999999999994334468999999999999999865 4


Q ss_pred             CcHHHhcccCCCEEecccCccccccchHHhhhcCC
Q 035618           80 IPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        80 ~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L  114 (116)
                      .|..+..+++|+.+++++|.+.+..|..+..+..+
T Consensus       165 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l  199 (635)
T 4g8a_A          165 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  199 (635)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred             CchhhccchhhhhhcccCccccccccccccchhhh
Confidence            67888999999999999999988778777776654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.64  E-value=1.6e-15  Score=88.31  Aligned_cols=97  Identities=21%  Similarity=0.195  Sum_probs=51.6

Q ss_pred             CcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhccc
Q 035618            9 PCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLL   88 (116)
Q Consensus         9 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~   88 (116)
                      +..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..++
T Consensus        45 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~  124 (177)
T 2o6r_A           45 HGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT  124 (177)
T ss_dssp             TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             HHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCc
Confidence            33445556666666666665433333345556666666666666532223345556666666666655433333345556


Q ss_pred             CCCEEecccCccccccc
Q 035618           89 KLHYLDLSKNQFFQELP  105 (116)
Q Consensus        89 ~l~~l~l~~n~l~~~~p  105 (116)
                      +|+.+++++|.+.+..|
T Consensus       125 ~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          125 SLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TCCEEECCSSCBCCCHH
T ss_pred             ccCEEEecCCCeeccCc
Confidence            66666666666544433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.63  E-value=2.5e-15  Score=87.52  Aligned_cols=97  Identities=21%  Similarity=0.244  Sum_probs=82.4

Q ss_pred             cccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch-hhhccCCCCeEEeeceeeccCCcH
Q 035618            4 STGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSINRFISSIPE   82 (116)
Q Consensus         4 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~   82 (116)
                      ..+.+|..+.  +.|+.|++++|.+.+..|..+..+++|+.+++++|.+. .+|. .+..+++|+.|++++|++.+..+.
T Consensus        23 ~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~l~~l~~~   99 (174)
T 2r9u_A           23 RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLKSIPRG   99 (174)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCCCccceeCHH
Confidence            3467777665  78999999999997777888999999999999999999 4665 468899999999999999765555


Q ss_pred             HHhcccCCCEEecccCccccc
Q 035618           83 SLGKLLKLHYLDLSKNQFFQE  103 (116)
Q Consensus        83 ~~~~~~~l~~l~l~~n~l~~~  103 (116)
                      .+..+++|+.+++++|.+...
T Consensus       100 ~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A          100 AFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             TTTTCTTCSEEECCSSCBCTT
T ss_pred             HhccccCCCEEEeCCCCcccc
Confidence            688999999999999999543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=2.2e-15  Score=87.74  Aligned_cols=108  Identities=26%  Similarity=0.224  Sum_probs=86.3

Q ss_pred             cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHh
Q 035618            6 GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLG   85 (116)
Q Consensus         6 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~   85 (116)
                      ..+|..+  .++++.|++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+++..+..+.
T Consensus        20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~   97 (177)
T 2o6r_A           20 TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFD   97 (177)
T ss_dssp             SSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhh
Confidence            4455443  36899999999999665555678899999999999999844344578999999999999999876666688


Q ss_pred             cccCCCEEecccCccccccchHHhhhcCCC
Q 035618           86 KLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        86 ~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      .+++|+.+++++|.+++..+..+..++.|+
T Consensus        98 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~  127 (177)
T 2o6r_A           98 KLTQLKELALDTNQLKSVPDGIFDRLTSLQ  127 (177)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CCcccCEEECcCCcceEeCHHHhcCCcccC
Confidence            999999999999999654444567777765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.63  E-value=2.2e-15  Score=94.03  Aligned_cols=108  Identities=26%  Similarity=0.241  Sum_probs=73.2

Q ss_pred             cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHh
Q 035618            6 GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLG   85 (116)
Q Consensus         6 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~   85 (116)
                      ..+|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|++....+..+.
T Consensus        90 ~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~  169 (290)
T 1p9a_G           90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN  169 (290)
T ss_dssp             SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred             CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhc
Confidence            35566666777777777777777555555677777777777777777733333456777777777777777644334456


Q ss_pred             cccCCCEEecccCccccccchHHhhhcCC
Q 035618           86 KLLKLHYLDLSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        86 ~~~~l~~l~l~~n~l~~~~p~~~~~l~~L  114 (116)
                      .+++|+.+++++|.+ ..+|..+..+..|
T Consensus       170 ~l~~L~~L~L~~N~l-~~ip~~~~~~~~L  197 (290)
T 1p9a_G          170 GLENLDTLLLQENSL-YTIPKGFFGSHLL  197 (290)
T ss_dssp             TCTTCCEEECCSSCC-CCCCTTTTTTCCC
T ss_pred             CcCCCCEEECCCCcC-CccChhhcccccC
Confidence            777778888888777 4666666555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.63  E-value=2e-15  Score=89.28  Aligned_cols=101  Identities=23%  Similarity=0.289  Sum_probs=48.2

Q ss_pred             CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCC
Q 035618           11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKL   90 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l   90 (116)
                      .+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|...+.++ .+..+++|
T Consensus        83 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L  161 (197)
T 4ezg_A           83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPEL  161 (197)
T ss_dssp             GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSC
T ss_pred             hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCC
Confidence            34444555555555555444344444455555555555555543344445555555555555554222333 34455555


Q ss_pred             CEEecccCccccccchHHhhhcCC
Q 035618           91 HYLDLSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        91 ~~l~l~~n~l~~~~p~~~~~l~~L  114 (116)
                      +.+++++|.+ ..++ .+..++.|
T Consensus       162 ~~L~l~~n~i-~~~~-~l~~l~~L  183 (197)
T 4ezg_A          162 KSLNIQFDGV-HDYR-GIEDFPKL  183 (197)
T ss_dssp             CEEECTTBCC-CCCT-TGGGCSSC
T ss_pred             CEEECCCCCC-cChH-HhccCCCC
Confidence            5555555555 2233 34444444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.62  E-value=1.1e-15  Score=100.67  Aligned_cols=114  Identities=19%  Similarity=0.138  Sum_probs=83.4

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus        66 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  145 (477)
T 2id5_A           66 NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH  145 (477)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT
T ss_pred             CccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh
Confidence            55666667788888888888888888854444456778888888888888876666677778888888888877766556


Q ss_pred             HHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           82 ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      ..+..+++|+.|++++|.+.+..+..+..++.|+
T Consensus       146 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  179 (477)
T 2id5_A          146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI  179 (477)
T ss_dssp             TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCC
T ss_pred             hhccCCCCCCEEECCCCcCcccChhHhcccCCCc
Confidence            6677777778888887777554445566666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.62  E-value=8.8e-16  Score=95.82  Aligned_cols=98  Identities=24%  Similarity=0.229  Sum_probs=48.1

Q ss_pred             cccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEec
Q 035618           16 SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDL   95 (116)
Q Consensus        16 ~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l   95 (116)
                      ++|+.|++++|.+ ..+|..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|+.|++
T Consensus        77 ~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  155 (290)
T 1p9a_G           77 PVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL  155 (290)
T ss_dssp             TTCCEEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CcCCEEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence            3334444444443 233444444555555555555555322234555555666666666555443344555556666666


Q ss_pred             ccCccccccchHHhhhcCC
Q 035618           96 SKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        96 ~~n~l~~~~p~~~~~l~~L  114 (116)
                      ++|.+++..+..+..+++|
T Consensus       156 ~~N~l~~l~~~~~~~l~~L  174 (290)
T 1p9a_G          156 ANNNLTELPAGLLNGLENL  174 (290)
T ss_dssp             TTSCCSCCCTTTTTTCTTC
T ss_pred             CCCcCCccCHHHhcCcCCC
Confidence            6666633222334444444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.62  E-value=2.5e-15  Score=101.35  Aligned_cols=113  Identities=25%  Similarity=0.244  Sum_probs=66.9

Q ss_pred             CccccccCcCccCCcccceeeccccccccc---cchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeecc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVE---IPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFIS   78 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~---~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~   78 (116)
                      |.+.+..|..+..+++|+.|++++|.+.+.   .+..+..+++|+.+++++|.+.+..|..+..+++|+.+++++|++.+
T Consensus       435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  514 (606)
T 3t6q_A          435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS  514 (606)
T ss_dssp             CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred             CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence            334444455555566666666666655431   12345556666666666666665555566666666666666666666


Q ss_pred             CCcHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           79 SIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        79 ~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      ..|..+..++.| .+++++|.+++..|..+..+++|+
T Consensus       515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~  550 (606)
T 3t6q_A          515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQR  550 (606)
T ss_dssp             GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSS
T ss_pred             CChhHhCccccc-EEECcCCcccccCHhhcccCCCCC
Confidence            666666666666 666666666655555566665553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.62  E-value=4.4e-16  Score=103.94  Aligned_cols=98  Identities=16%  Similarity=0.121  Sum_probs=49.8

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeecc-CC
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFIS-SI   80 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~   80 (116)
                      |.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+++++++|.+.+..+..+..+++|++|++++|.+.+ ..
T Consensus        36 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  115 (549)
T 2z81_A           36 NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV  115 (549)
T ss_dssp             SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCS
T ss_pred             CccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccch
Confidence            33444444455555555555555555544444455555555555555555553333335555555555555555443 22


Q ss_pred             cHHHhcccCCCEEecccCc
Q 035618           81 PESLGKLLKLHYLDLSKNQ   99 (116)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~   99 (116)
                      |..+..+++|+.+++++|.
T Consensus       116 ~~~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A          116 TSLFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             SCSCTTCTTCCEEEEEESS
T ss_pred             hhhhhccCCccEEECCCCc
Confidence            3344455555555555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.62  E-value=9.1e-16  Score=96.04  Aligned_cols=105  Identities=23%  Similarity=0.235  Sum_probs=58.2

Q ss_pred             CccCCcccceeeccccccccccchhhcCCCCCCeEecccCccee-cCchhhhccCCCCeEEeeceeeccCCcHHHhcccC
Q 035618           11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTG-RLPPEISSFIKLEDIGLSINRFISSIPESLGKLLK   89 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~   89 (116)
                      .+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+ ..|..+..+++|+.+++++|.+.+..|..+..+++
T Consensus       121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  200 (306)
T 2z66_A          121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  200 (306)
T ss_dssp             TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC
Confidence            34555555555555555544444445555566666666665543 24455555566666666666655444555556666


Q ss_pred             CCEEecccCccccccchHHhhhcCCC
Q 035618           90 LHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        90 l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      |+.+++++|.+++..+..+..+++|+
T Consensus       201 L~~L~L~~N~l~~~~~~~~~~l~~L~  226 (306)
T 2z66_A          201 LQVLNMSHNNFFSLDTFPYKCLNSLQ  226 (306)
T ss_dssp             CCEEECTTSCCSBCCSGGGTTCTTCC
T ss_pred             CCEEECCCCccCccChhhccCcccCC
Confidence            66666666666444444455555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.62  E-value=4.2e-15  Score=86.23  Aligned_cols=98  Identities=21%  Similarity=0.193  Sum_probs=82.7

Q ss_pred             ccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHH
Q 035618            5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESL   84 (116)
Q Consensus         5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~   84 (116)
                      ...+|..+.  +.++.|++++|.+.+..|..+..+++|+++++++|++.+..+..+..+++|+.|++++|++.+..+..+
T Consensus        21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~   98 (170)
T 3g39_A           21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF   98 (170)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHh
Confidence            455776653  789999999999977778889999999999999999994444457899999999999999986656678


Q ss_pred             hcccCCCEEecccCcccccc
Q 035618           85 GKLLKLHYLDLSKNQFFQEL  104 (116)
Q Consensus        85 ~~~~~l~~l~l~~n~l~~~~  104 (116)
                      ..+++|+.+++++|.+....
T Consensus        99 ~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           99 DNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             TTCTTCCEEECCSSCBCTTB
T ss_pred             cCCCCCCEEEeCCCCCCCCc
Confidence            99999999999999986553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.62  E-value=3.1e-15  Score=88.42  Aligned_cols=99  Identities=20%  Similarity=0.266  Sum_probs=86.6

Q ss_pred             ccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHH
Q 035618            5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESL   84 (116)
Q Consensus         5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~   84 (116)
                      ...+|..+..+++|+.|++++|.+++..+..|..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+....+..|
T Consensus        43 i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~  122 (193)
T 2wfh_A           43 FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF  122 (193)
T ss_dssp             CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred             CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh
Confidence            34678889999999999999999977777789999999999999999996556679999999999999999986555568


Q ss_pred             hcccCCCEEecccCccccc
Q 035618           85 GKLLKLHYLDLSKNQFFQE  103 (116)
Q Consensus        85 ~~~~~l~~l~l~~n~l~~~  103 (116)
                      ..+++|+.+++++|.+...
T Consensus       123 ~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          123 NDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             TTCTTCCEEECCSSCEECS
T ss_pred             hcCccccEEEeCCCCeecC
Confidence            8999999999999998543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.62  E-value=8.6e-16  Score=104.82  Aligned_cols=113  Identities=22%  Similarity=0.186  Sum_probs=67.8

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch-hhhccCCCCeEEeeceeeccCC
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSINRFISSI   80 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~   80 (116)
                      |.+.+..+..+.++++|+.|++++|.+.+..|..+..+++|+++++++|.+. .+|. .+..+++|+.+++++|.+.+..
T Consensus        35 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~  113 (680)
T 1ziw_A           35 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIK  113 (680)
T ss_dssp             SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred             CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccC
Confidence            3444444445666666666666666665555556666666666666666666 3443 4666666666666666665444


Q ss_pred             cHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           81 PESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      +..+..+++|+++++++|.+++..|..++.+++|+
T Consensus       114 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  148 (680)
T 1ziw_A          114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ  148 (680)
T ss_dssp             SCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred             hhHccccCCCCEEECCCCcccccCchhhcccccCC
Confidence            45566666666666666666555555555555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.62  E-value=1.3e-15  Score=106.37  Aligned_cols=102  Identities=25%  Similarity=0.312  Sum_probs=47.9

Q ss_pred             cCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchh--hhccCCCCeEEeeceeeccCCc-HHHhc
Q 035618           10 CEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE--ISSFIKLEDIGLSINRFISSIP-ESLGK   86 (116)
Q Consensus        10 ~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~-~~~~~   86 (116)
                      ..+.++++|+.|++++|.+.+..|..+..+++|+++++++|.+.+..+..  +..+++|+.|++++|.+.+..+ ..+..
T Consensus        67 ~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~  146 (844)
T 3j0a_A           67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK  146 (844)
T ss_dssp             TTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT
T ss_pred             HHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh
Confidence            33444444444555444444444444444555555555555444333332  4445555555555554443322 33455


Q ss_pred             ccCCCEEecccCccccccchHHhhh
Q 035618           87 LLKLHYLDLSKNQFFQELPKELEKV  111 (116)
Q Consensus        87 ~~~l~~l~l~~n~l~~~~p~~~~~l  111 (116)
                      +++|+.|++++|.+.+..|..+..+
T Consensus       147 L~~L~~L~Ls~N~i~~~~~~~l~~l  171 (844)
T 3j0a_A          147 LNSLKSIDFSSNQIFLVCEHELEPL  171 (844)
T ss_dssp             CSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred             CCCCCEEECCCCcCCeeCHHHcccc
Confidence            5555555555555544444444433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.61  E-value=3.7e-15  Score=88.17  Aligned_cols=105  Identities=21%  Similarity=0.274  Sum_probs=86.0

Q ss_pred             ccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhc
Q 035618            7 DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGK   86 (116)
Q Consensus         7 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~   86 (116)
                      .+| .+..+++|+.|++++|.+ .. ++.+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..
T Consensus        58 ~l~-~l~~l~~L~~L~l~~n~~-~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~  134 (197)
T 4ezg_A           58 DLT-GIEYAHNIKDLTINNIHA-TN-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT  134 (197)
T ss_dssp             CCT-TGGGCTTCSEEEEESCCC-SC-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT
T ss_pred             ChH-HHhcCCCCCEEEccCCCC-Cc-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh
Confidence            455 678889999999999966 33 346788999999999999988667778888999999999999988777788899


Q ss_pred             ccCCCEEecccCccccccchHHhhhcCCC
Q 035618           87 LLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        87 ~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      +++|+.+++++|...+.+| .+..+++|+
T Consensus       135 l~~L~~L~L~~n~~i~~~~-~l~~l~~L~  162 (197)
T 4ezg_A          135 LPKVNSIDLSYNGAITDIM-PLKTLPELK  162 (197)
T ss_dssp             CSSCCEEECCSCTBCCCCG-GGGGCSSCC
T ss_pred             CCCCCEEEccCCCCccccH-hhcCCCCCC
Confidence            9999999999998336776 577787775

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.61  E-value=8.7e-16  Score=103.80  Aligned_cols=104  Identities=14%  Similarity=0.078  Sum_probs=54.9

Q ss_pred             ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH   91 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~   91 (116)
                      +..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..|..++.+++|+.|++++|.+.+..+..|..+++|+
T Consensus        71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  150 (597)
T 3oja_B           71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  150 (597)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence            34455555666655555444444555555555555555555543333455555555555555555432223345555555


Q ss_pred             EEecccCccccccchHHhhhcCCC
Q 035618           92 YLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        92 ~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      .|++++|.+.+..|..++.+++|+
T Consensus       151 ~L~Ls~N~l~~~~~~~~~~l~~L~  174 (597)
T 3oja_B          151 TLSMSNNNLERIEDDTFQATTSLQ  174 (597)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             EEEeeCCcCCCCChhhhhcCCcCc
Confidence            555555555444444555555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.61  E-value=1.1e-15  Score=103.05  Aligned_cols=99  Identities=16%  Similarity=0.050  Sum_probs=50.6

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |.+.+..|..+.++++|++|++++|.+.+..|..|..+++|+++++++|.+.+..|..+..+++|+.|++++|.+.+..+
T Consensus        43 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~  122 (606)
T 3t6q_A           43 NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF  122 (606)
T ss_dssp             CCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGG
T ss_pred             CccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCc
Confidence            34444445555566666666666665555555555555666666666555554444455555555555555554443222


Q ss_pred             HHHhcccCCCEEecccCcc
Q 035618           82 ESLGKLLKLHYLDLSKNQF  100 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l  100 (116)
                      ..+..+++|+++++++|.+
T Consensus       123 ~~~~~l~~L~~L~L~~n~l  141 (606)
T 3t6q_A          123 IPLHNQKTLESLYLGSNHI  141 (606)
T ss_dssp             SCCTTCTTCCEEECCSSCC
T ss_pred             chhccCCcccEEECCCCcc
Confidence            3333444444444444444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.60  E-value=3.8e-15  Score=99.66  Aligned_cols=112  Identities=23%  Similarity=0.218  Sum_probs=97.1

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch-hhhccCCCCeEEeeceeecc-C
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSINRFIS-S   79 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~-~   79 (116)
                      |.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+++++++|.+. .++. .++.+++|+.+++++|.+.+ .
T Consensus        62 n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~  140 (570)
T 2z63_A           62 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK  140 (570)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCC
T ss_pred             CcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceec
Confidence            5666666778999999999999999997777788999999999999999998 4544 68899999999999999876 5


Q ss_pred             CcHHHhcccCCCEEecccCccccccchHHhhhcCC
Q 035618           80 IPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        80 ~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L  114 (116)
                      +|..+..+++|+++++++|.+.+..|..++.+++|
T Consensus       141 lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  175 (570)
T 2z63_A          141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (570)
T ss_dssp             CCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred             ChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence            78999999999999999999977777778877766

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.60  E-value=6.6e-15  Score=87.65  Aligned_cols=104  Identities=23%  Similarity=0.206  Sum_probs=84.5

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |++.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+
T Consensus        62 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  141 (208)
T 2o6s_A           62 NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD  141 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence            55555555567889999999999999966555557889999999999999985444457889999999999999876555


Q ss_pred             HHHhcccCCCEEecccCccccccc
Q 035618           82 ESLGKLLKLHYLDLSKNQFFQELP  105 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~p  105 (116)
                      ..+..+++|+.+++++|.+.+..|
T Consensus       142 ~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          142 GVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             TTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             HHhccCCCccEEEecCCCeecCCC
Confidence            568889999999999998765554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.60  E-value=2.8e-15  Score=99.57  Aligned_cols=104  Identities=24%  Similarity=0.252  Sum_probs=67.7

Q ss_pred             ccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhc
Q 035618            7 DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGK   86 (116)
Q Consensus         7 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~   86 (116)
                      .+|..+.  ++++.|++++|.+.+..|..+..+++|+++++++|.+.+..|..+..+++|++|++++|.+. .+|..  .
T Consensus        14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~   88 (520)
T 2z7x_B           14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--P   88 (520)
T ss_dssp             SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--C
T ss_pred             ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--c
Confidence            4555554  66777777777775555566667777777777777776555666667777777777777665 45544  5


Q ss_pred             ccCCCEEecccCcccc-ccchHHhhhcCCC
Q 035618           87 LLKLHYLDLSKNQFFQ-ELPKELEKVVQLS  115 (116)
Q Consensus        87 ~~~l~~l~l~~n~l~~-~~p~~~~~l~~L~  115 (116)
                      +++|++|++++|.+.+ .+|..++.+++|+
T Consensus        89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~  118 (520)
T 2z7x_B           89 TVNLKHLDLSFNAFDALPICKEFGNMSQLK  118 (520)
T ss_dssp             CCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred             cCCccEEeccCCccccccchhhhccCCcce
Confidence            6667777777777654 3566666666654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.60  E-value=6.4e-15  Score=94.32  Aligned_cols=111  Identities=25%  Similarity=0.173  Sum_probs=90.2

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |.+.+..+..+..+++|+.|++++|.+....+..|..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+...-+
T Consensus        74 N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  153 (361)
T 2xot_A           74 NHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV  153 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred             CcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH
Confidence            56666667789999999999999999976666678899999999999999997667889999999999999999875333


Q ss_pred             HHH---hcccCCCEEecccCccccccchHHhhhc
Q 035618           82 ESL---GKLLKLHYLDLSKNQFFQELPKELEKVV  112 (116)
Q Consensus        82 ~~~---~~~~~l~~l~l~~n~l~~~~p~~~~~l~  112 (116)
                      ..+   ..+++|+.|++++|.+.+..+..+..++
T Consensus       154 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~  187 (361)
T 2xot_A          154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP  187 (361)
T ss_dssp             GGTC----CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred             HHhcCcccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence            334   5689999999999999554445566554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=3.9e-15  Score=84.43  Aligned_cols=99  Identities=20%  Similarity=0.146  Sum_probs=85.9

Q ss_pred             Ccccceeeccccccc-cccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEE
Q 035618           15 SSHLHAFDLLFNHLF-VEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYL   93 (116)
Q Consensus        15 l~~L~~l~l~~n~~~-~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l   93 (116)
                      .++++.|++++|.+. +.+|..+..+++|+.+++++|.+.+ + ..+..+++|+.+++++|.+.+.+|..+..+++|+.+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            478999999999996 5788888899999999999999984 4 778889999999999999987788888889999999


Q ss_pred             ecccCccccc-cchHHhhhcCCC
Q 035618           94 DLSKNQFFQE-LPKELEKVVQLS  115 (116)
Q Consensus        94 ~l~~n~l~~~-~p~~~~~l~~L~  115 (116)
                      ++++|.+++. .|..++.+++|+
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~  116 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLK  116 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCC
Confidence            9999999552 347788888775

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.59  E-value=3.6e-15  Score=99.56  Aligned_cols=109  Identities=26%  Similarity=0.301  Sum_probs=94.1

Q ss_pred             ccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHH
Q 035618            5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESL   84 (116)
Q Consensus         5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~   84 (116)
                      ...+|..+.  ++++.|++++|.+++..|..+..+++|+++++++|.+.+..|..+..+++|++|++++|.+.+..+..+
T Consensus        17 l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   94 (549)
T 2z81_A           17 FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF   94 (549)
T ss_dssp             CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHH
T ss_pred             cccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHh
Confidence            455676554  789999999999977778889999999999999999997777889999999999999999987777779


Q ss_pred             hcccCCCEEecccCcccc-ccchHHhhhcCCC
Q 035618           85 GKLLKLHYLDLSKNQFFQ-ELPKELEKVVQLS  115 (116)
Q Consensus        85 ~~~~~l~~l~l~~n~l~~-~~p~~~~~l~~L~  115 (116)
                      ..+++|++|++++|.+.+ ..|..++.+++|+
T Consensus        95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  126 (549)
T 2z81_A           95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ  126 (549)
T ss_dssp             TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             ccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence            999999999999999965 4566778887775

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.59  E-value=1.8e-15  Score=97.49  Aligned_cols=103  Identities=15%  Similarity=0.078  Sum_probs=51.6

Q ss_pred             ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH   91 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~   91 (116)
                      +..+++|+.|++++|.+....+..+..+++|+.+++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+
T Consensus        65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  144 (390)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence            34455555555555555443334455555555555555555533334455555555555555555422222234555555


Q ss_pred             EEecccCccccccchHHhhhcCC
Q 035618           92 YLDLSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        92 ~l~l~~n~l~~~~p~~~~~l~~L  114 (116)
                      .+++++|.+.+..|..+..+++|
T Consensus       145 ~L~L~~n~l~~~~~~~~~~l~~L  167 (390)
T 3o6n_A          145 TLSMSNNNLERIEDDTFQATTSL  167 (390)
T ss_dssp             EEECCSSCCCBCCTTTTSSCTTC
T ss_pred             EEECCCCccCccChhhccCCCCC
Confidence            55555555544444444444444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.58  E-value=9e-15  Score=102.16  Aligned_cols=115  Identities=19%  Similarity=0.145  Sum_probs=98.5

Q ss_pred             CCccccccCcCccCCcccceeecccccccccc-chhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccC
Q 035618            1 MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEI-PNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISS   79 (116)
Q Consensus         1 ~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~-~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~   79 (116)
                      +|.+.+..+..+..+++|+.|++++|...+.+ |..+..+++|+++++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus        33 ~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  112 (844)
T 3j0a_A           33 FNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA  112 (844)
T ss_dssp             SCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC
T ss_pred             CCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc
Confidence            36777778889999999999999999655555 67789999999999999999977788999999999999999998876


Q ss_pred             CcHH--HhcccCCCEEecccCccccccc-hHHhhhcCCC
Q 035618           80 IPES--LGKLLKLHYLDLSKNQFFQELP-KELEKVVQLS  115 (116)
Q Consensus        80 ~~~~--~~~~~~l~~l~l~~n~l~~~~p-~~~~~l~~L~  115 (116)
                      ++..  +..+++|++|++++|.+.+..| ..|+++++|+
T Consensus       113 ~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~  151 (844)
T 3j0a_A          113 VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK  151 (844)
T ss_dssp             CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred             cccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence            6654  8899999999999999976654 5788888876

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.58  E-value=1.1e-14  Score=91.99  Aligned_cols=111  Identities=20%  Similarity=0.242  Sum_probs=74.6

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |++.+..+..+..+++|+.|++++|.+++..|..+..+++|+++++++|.+. .+|..+.  ++|+.+++++|.+.+..+
T Consensus        62 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~  138 (330)
T 1xku_A           62 NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRK  138 (330)
T ss_dssp             SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCH
T ss_pred             CcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCH
Confidence            4445555556777777888888877776666777777777778777777776 5555433  567777777777665555


Q ss_pred             HHHhcccCCCEEecccCcccc--ccchHHhhhcCCC
Q 035618           82 ESLGKLLKLHYLDLSKNQFFQ--ELPKELEKVVQLS  115 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~--~~p~~~~~l~~L~  115 (116)
                      ..+..+++|+.+++++|.+..  ..+..+..++.|+
T Consensus       139 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  174 (330)
T 1xku_A          139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  174 (330)
T ss_dssp             HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             hHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence            567777777777777777732  4555666666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.2e-15  Score=97.16  Aligned_cols=94  Identities=21%  Similarity=0.237  Sum_probs=48.7

Q ss_pred             ccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchh-hhccCCCCeEEeeceeeccCCc
Q 035618            3 NSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE-ISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         3 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      .+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|.+. .++.. +..+++|+.+++++|++. .+|
T Consensus        63 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~  140 (353)
T 2z80_A           63 RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLG  140 (353)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCS-SSC
T ss_pred             cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCc-ccC
Confidence            333333334555666666666666554444444555555666666655555 33332 455555555555555544 233


Q ss_pred             H--HHhcccCCCEEecccC
Q 035618           82 E--SLGKLLKLHYLDLSKN   98 (116)
Q Consensus        82 ~--~~~~~~~l~~l~l~~n   98 (116)
                      .  .+..+++|+.+++++|
T Consensus       141 ~~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A          141 ETSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             SSCSCTTCTTCCEEEEEES
T ss_pred             chhhhccCCCCcEEECCCC
Confidence            2  3445555555555555

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.58  E-value=1.2e-14  Score=84.57  Aligned_cols=107  Identities=20%  Similarity=0.245  Sum_probs=82.6

Q ss_pred             CccccccCcCccCCc-ccceeeccccccccccchhhcCCCCCCeEecccCcceecCch-hhhccCCCCeEEeeceeeccC
Q 035618            2 NNSTGDIPCEIGKSS-HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSINRFISS   79 (116)
Q Consensus         2 n~~~~~~~~~~~~l~-~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~   79 (116)
                      |.+. .++. +..+. +|+.|++++|.+++.  +.+..+++|+.+++++|.+.+ +|. .+..+++|+.+++++|.+. .
T Consensus        29 n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~-~  102 (176)
T 1a9n_A           29 YKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTELILTNNSLV-E  102 (176)
T ss_dssp             SCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEEECCSCCCC-C
T ss_pred             CCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchhhcCCCCCEEECCCCcCC-c
Confidence            4433 3443 45554 899999999998654  578889999999999999984 454 4588999999999999884 5


Q ss_pred             CcH--HHhcccCCCEEecccCccccccchH----HhhhcCCC
Q 035618           80 IPE--SLGKLLKLHYLDLSKNQFFQELPKE----LEKVVQLS  115 (116)
Q Consensus        80 ~~~--~~~~~~~l~~l~l~~n~l~~~~p~~----~~~l~~L~  115 (116)
                      +|.  .+..+++|+.+++++|.+ ..+|..    ++.+++|+
T Consensus       103 ~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~  143 (176)
T 1a9n_A          103 LGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVR  143 (176)
T ss_dssp             GGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCS
T ss_pred             chhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccc
Confidence            665  688889999999999999 456664    77887775

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.58  E-value=4.8e-15  Score=89.94  Aligned_cols=112  Identities=11%  Similarity=0.113  Sum_probs=75.3

Q ss_pred             CccccccCcCccCCcccceeeccccc-cccccchhhcCCCCCCeEeccc-CcceecCchhhhccCCCCeEEeeceeeccC
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNH-LFVEIPNDLGKLNSLTKLILKW-NQFTGRLPPEISSFIKLEDIGLSINRFISS   79 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~l~~l~~l~l~~-~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~   79 (116)
                      |++.+..+..+..+++|+.|++++|. +....+..+..+++|+.+++++ |.+.+..+..+..+++|+.+++++|.+.+ 
T Consensus        41 n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-  119 (239)
T 2xwt_C           41 THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-  119 (239)
T ss_dssp             CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-
T ss_pred             CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-
Confidence            45455555567778888888888886 6444444677788888888887 77774434567777788888888887754 


Q ss_pred             CcHHHhcccCCC---EEecccC-ccccccchHHhhhcCCC
Q 035618           80 IPESLGKLLKLH---YLDLSKN-QFFQELPKELEKVVQLS  115 (116)
Q Consensus        80 ~~~~~~~~~~l~---~l~l~~n-~l~~~~p~~~~~l~~L~  115 (116)
                      +|. +..+++|+   .+++++| .+.+..+..|..++.|+
T Consensus       120 lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~  158 (239)
T 2xwt_C          120 FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET  158 (239)
T ss_dssp             CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred             ccc-cccccccccccEEECCCCcchhhcCcccccchhcce
Confidence            554 66666666   7777777 66444344466666553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.57  E-value=5.4e-15  Score=98.24  Aligned_cols=110  Identities=24%  Similarity=0.247  Sum_probs=63.3

Q ss_pred             CccccccCcCccCCcccceeecccccccc--ccchhhcCCCCCCeEecccCcceecCchh-hhccCCCCeEEeeceeecc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFV--EIPNDLGKLNSLTKLILKWNQFTGRLPPE-ISSFIKLEDIGLSINRFIS   78 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~--~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~   78 (116)
                      |.+.+..|..+..+++|+.|++++|.+.+  .+|..+..+++|+.+++++|.+.+.+|.. +..+++|+.+++++|++++
T Consensus       334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~  413 (520)
T 2z7x_B          334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD  413 (520)
T ss_dssp             SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred             CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence            55666677777778888888888887754  45566777777888888877777545543 4445555555555555443


Q ss_pred             CCcHHHhcccCCCEEecccCccccccchHHhhhcCC
Q 035618           79 SIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        79 ~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L  114 (116)
                      ..|..+.  ++|+.+++++|.+ ..+|..+..+++|
T Consensus       414 ~~~~~l~--~~L~~L~Ls~N~l-~~ip~~~~~l~~L  446 (520)
T 2z7x_B          414 TIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEAL  446 (520)
T ss_dssp             GGGGSCC--TTCCEEECCSSCC-CCCCGGGGGCTTC
T ss_pred             chhhhhc--ccCCEEECCCCcc-cccchhhhcCCCC
Confidence            3332211  3444444444444 2444433344333

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.57  E-value=1.3e-14  Score=83.81  Aligned_cols=101  Identities=22%  Similarity=0.198  Sum_probs=85.2

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCc--hhhhccCCCCeEEeeceeeccC
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLP--PEISSFIKLEDIGLSINRFISS   79 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~   79 (116)
                      |.+.+.  ..+..+++|+.|++++|.+.+..|..+..+++|+.+++++|.+. .++  ..+..+++|+.+++++|.+.+.
T Consensus        59 n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~  135 (168)
T 2ell_A           59 VGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNL  135 (168)
T ss_dssp             SCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred             CCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcch
Confidence            454444  67888999999999999997768877777999999999999998 455  6788999999999999998765


Q ss_pred             Cc---HHHhcccCCCEEecccCccccccch
Q 035618           80 IP---ESLGKLLKLHYLDLSKNQFFQELPK  106 (116)
Q Consensus        80 ~~---~~~~~~~~l~~l~l~~n~l~~~~p~  106 (116)
                      .+   ..+..+++|+.+++++|.+ ..+|+
T Consensus       136 ~~~~~~~~~~l~~L~~L~l~~n~~-~~~~~  164 (168)
T 2ell_A          136 NDYRESVFKLLPQLTYLDGYDRED-QEAPD  164 (168)
T ss_dssp             TTHHHHHHTTCSSCCEETTEETTS-CBCCS
T ss_pred             HHHHHHHHHhCccCcEecCCCCCh-hhccc
Confidence            44   3788999999999999998 66665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.56  E-value=4e-15  Score=94.84  Aligned_cols=84  Identities=25%  Similarity=0.265  Sum_probs=43.4

Q ss_pred             ccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecc
Q 035618           17 HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLS   96 (116)
Q Consensus        17 ~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~   96 (116)
                      +|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|+.++++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            55555555555533333345555555555555555554334445555555555555555543222235555555555555


Q ss_pred             cCcc
Q 035618           97 KNQF  100 (116)
Q Consensus        97 ~n~l  100 (116)
                      +|.+
T Consensus       133 ~n~l  136 (353)
T 2z80_A          133 GNPY  136 (353)
T ss_dssp             TCCC
T ss_pred             CCCC
Confidence            5555

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.56  E-value=9.1e-15  Score=95.92  Aligned_cols=96  Identities=23%  Similarity=0.101  Sum_probs=48.9

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |++.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+....+..+..+++|+.|++++|.+....+
T Consensus        85 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  164 (452)
T 3zyi_A           85 NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS  164 (452)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT
T ss_pred             CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCH
Confidence            34444445555555666666666665544444555555566666666655552222335555555555555555543222


Q ss_pred             HHHhcccCCCEEeccc
Q 035618           82 ESLGKLLKLHYLDLSK   97 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~   97 (116)
                      ..+..+++|+.|++++
T Consensus       165 ~~~~~l~~L~~L~l~~  180 (452)
T 3zyi_A          165 YAFNRVPSLMRLDLGE  180 (452)
T ss_dssp             TTTTTCTTCCEEECCC
T ss_pred             hHHhcCCcccEEeCCC
Confidence            2344444444444444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.56  E-value=1.4e-14  Score=97.21  Aligned_cols=97  Identities=26%  Similarity=0.196  Sum_probs=52.8

Q ss_pred             cccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEec
Q 035618           16 SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDL   95 (116)
Q Consensus        16 ~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l   95 (116)
                      ++++.|++++|.+.+..+..+..+++|+++++++|.+.+..|..+..+++|++|++++|.+. .+|..  .+++|+.|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            45566666666654444455555666666666666555444555555556666666665554 34433  4555555555


Q ss_pred             ccCcccc-ccchHHhhhcCCC
Q 035618           96 SKNQFFQ-ELPKELEKVVQLS  115 (116)
Q Consensus        96 ~~n~l~~-~~p~~~~~l~~L~  115 (116)
                      ++|.+.+ .+|..++++++|+
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~  149 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLT  149 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCC
T ss_pred             CCCCccccCchHhhcccCccc
Confidence            5555533 2334555555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.56  E-value=2.7e-14  Score=90.31  Aligned_cols=113  Identities=18%  Similarity=0.126  Sum_probs=76.6

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+. .+|..+..+++|+.+++++|.++...+
T Consensus       203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~  281 (332)
T 2ft3_A          203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV  281 (332)
T ss_dssp             SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccCh
Confidence            4445555566777777778888877776655556777777888888877777 677777777778888888777765433


Q ss_pred             HHHhc------ccCCCEEecccCccc--cccchHHhhhcCCC
Q 035618           82 ESLGK------LLKLHYLDLSKNQFF--QELPKELEKVVQLS  115 (116)
Q Consensus        82 ~~~~~------~~~l~~l~l~~n~l~--~~~p~~~~~l~~L~  115 (116)
                      ..+..      ...++.+++.+|.+.  +..|..+..++.|+
T Consensus       282 ~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~  323 (332)
T 2ft3_A          282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL  323 (332)
T ss_dssp             TSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred             hHccccccccccccccceEeecCcccccccCcccccccchhh
Confidence            44433      245677778877774  44555666666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.56  E-value=1.4e-14  Score=97.99  Aligned_cols=102  Identities=19%  Similarity=0.189  Sum_probs=89.2

Q ss_pred             CCccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchh-hhccCCCCeEEeeceeeccC
Q 035618            1 MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE-ISSFIKLEDIGLSINRFISS   79 (116)
Q Consensus         1 ~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~   79 (116)
                      +|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+++++++|.+. .+|.. +..+++|+.|++++|.+.+.
T Consensus        84 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~  162 (597)
T 3oja_B           84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI  162 (597)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCC
Confidence            35666777778999999999999999997777777889999999999999999 56654 68999999999999999888


Q ss_pred             CcHHHhcccCCCEEecccCccccc
Q 035618           80 IPESLGKLLKLHYLDLSKNQFFQE  103 (116)
Q Consensus        80 ~~~~~~~~~~l~~l~l~~n~l~~~  103 (116)
                      .|..+..+++|+.|++++|.+++.
T Consensus       163 ~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          163 EDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             ChhhhhcCCcCcEEECcCCCCCCc
Confidence            788899999999999999999554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.56  E-value=1.3e-14  Score=94.85  Aligned_cols=96  Identities=22%  Similarity=0.135  Sum_probs=54.7

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |++.+..+..+..+++|+.|++++|.+....+..|..+++|+.+++++|.+....+..+..+++|+.|++++|.+....+
T Consensus        74 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~  153 (440)
T 3zyj_A           74 NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS  153 (440)
T ss_dssp             CCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECT
T ss_pred             CcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCH
Confidence            44444455556666666666666666655555556666666666666666662222345566666666666666543333


Q ss_pred             HHHhcccCCCEEeccc
Q 035618           82 ESLGKLLKLHYLDLSK   97 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~   97 (116)
                      ..+..+++|+.|++++
T Consensus       154 ~~~~~l~~L~~L~l~~  169 (440)
T 3zyj_A          154 YAFNRIPSLRRLDLGE  169 (440)
T ss_dssp             TTTTTCTTCCEEECCC
T ss_pred             HHhhhCcccCEeCCCC
Confidence            3444555555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.55  E-value=2.9e-15  Score=94.20  Aligned_cols=98  Identities=19%  Similarity=0.165  Sum_probs=53.3

Q ss_pred             CccccccCcCc--cCCcccceeeccccccccccchhhcCC-----CCCCeEecccCcceecCchhhhccCCCCeEEeece
Q 035618            2 NNSTGDIPCEI--GKSSHLHAFDLLFNHLFVEIPNDLGKL-----NSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSIN   74 (116)
Q Consensus         2 n~~~~~~~~~~--~~l~~L~~l~l~~n~~~~~~~~~~~~l-----~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n   74 (116)
                      |.+.+..|..+  ..+++|+.|++++|.+++. |..+..+     ++|+++++++|.+.+..+..+..+++|+.+++++|
T Consensus       105 n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  183 (312)
T 1wwl_A          105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN  183 (312)
T ss_dssp             EBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC
T ss_pred             CcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC
Confidence            34445555554  5566666666666666443 5444444     56666666666665433355555666666666666


Q ss_pred             eeccC--CcHHH--hcccCCCEEecccCcc
Q 035618           75 RFISS--IPESL--GKLLKLHYLDLSKNQF  100 (116)
Q Consensus        75 ~~~~~--~~~~~--~~~~~l~~l~l~~n~l  100 (116)
                      ++.+.  ++..+  ..+++|+.|++++|.+
T Consensus       184 ~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l  213 (312)
T 1wwl_A          184 PELGERGLISALCPLKFPTLQVLALRNAGM  213 (312)
T ss_dssp             TTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred             CcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence            54332  12222  4555555555555555

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.55  E-value=2.3e-15  Score=94.66  Aligned_cols=101  Identities=22%  Similarity=0.151  Sum_probs=85.2

Q ss_pred             CCcccceeeccccccccccchhh--cCCCCCCeEecccCcceecCchhhhcc-----CCCCeEEeeceeeccCCcHHHhc
Q 035618           14 KSSHLHAFDLLFNHLFVEIPNDL--GKLNSLTKLILKWNQFTGRLPPEISSF-----IKLEDIGLSINRFISSIPESLGK   86 (116)
Q Consensus        14 ~l~~L~~l~l~~n~~~~~~~~~~--~~l~~l~~l~l~~~~~~~~~~~~~~~~-----~~L~~l~l~~n~~~~~~~~~~~~   86 (116)
                      .+++|+.|++++|.+++..|..+  ..+++|+.+++++|.+.+. |..+..+     ++|++|++++|++.+..+..+..
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            68899999999999988888876  7899999999999999955 8777776     89999999999998777788999


Q ss_pred             ccCCCEEecccCccccc--cchHH--hhhcCCC
Q 035618           87 LLKLHYLDLSKNQFFQE--LPKEL--EKVVQLS  115 (116)
Q Consensus        87 ~~~l~~l~l~~n~l~~~--~p~~~--~~l~~L~  115 (116)
                      +++|+.+++++|.+.+.  +|..+  +.+++|+
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~  204 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQ  204 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCC
Confidence            99999999999998665  34444  6666664

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.54  E-value=2.1e-14  Score=94.18  Aligned_cols=108  Identities=19%  Similarity=0.166  Sum_probs=90.8

Q ss_pred             cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHh
Q 035618            6 GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLG   85 (116)
Q Consensus         6 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~   85 (116)
                      ..+|..+.  ++++.|++++|.+.+..+..|..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+....+..+.
T Consensus        67 ~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  144 (452)
T 3zyi_A           67 SEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE  144 (452)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred             CccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence            44565544  5899999999999887788899999999999999999976677899999999999999998866566688


Q ss_pred             cccCCCEEecccCccccccchHHhhhcCCC
Q 035618           86 KLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        86 ~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      .+++|+.|++++|.+.+..+..|..+++|+
T Consensus       145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  174 (452)
T 3zyi_A          145 YLSKLRELWLRNNPIESIPSYAFNRVPSLM  174 (452)
T ss_dssp             SCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred             ccCCCCEEECCCCCcceeCHhHHhcCCccc
Confidence            999999999999999655455677776664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.54  E-value=3e-14  Score=90.03  Aligned_cols=102  Identities=24%  Similarity=0.264  Sum_probs=44.0

Q ss_pred             CcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhccc
Q 035618            9 PCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLL   88 (116)
Q Consensus         9 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~   88 (116)
                      +..+..+++|+.|++++|.+. .+|..+.  ++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..++
T Consensus       164 ~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  240 (330)
T 1xku_A          164 NGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP  240 (330)
T ss_dssp             TTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred             hhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence            333444444444444444431 2222211  3344444444444433334444444555555555544433333444444


Q ss_pred             CCCEEecccCccccccchHHhhhcCC
Q 035618           89 KLHYLDLSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        89 ~l~~l~l~~n~l~~~~p~~~~~l~~L  114 (116)
                      +|+.+++++|.+ ..+|..+..++.|
T Consensus       241 ~L~~L~L~~N~l-~~lp~~l~~l~~L  265 (330)
T 1xku_A          241 HLRELHLNNNKL-VKVPGGLADHKYI  265 (330)
T ss_dssp             TCCEEECCSSCC-SSCCTTTTTCSSC
T ss_pred             CCCEEECCCCcC-ccCChhhccCCCc
Confidence            555555555554 3444444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.53  E-value=1.1e-14  Score=96.45  Aligned_cols=110  Identities=21%  Similarity=0.224  Sum_probs=76.0

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhc-CCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLG-KLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI   80 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~   80 (116)
                      |.+.+..|..+..+++|+.|++++|.+++..|..+. .+++|+.+++++|.+.+. +. ...+++|+.|++++|.+++ +
T Consensus       130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~  206 (487)
T 3oja_A          130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-M  206 (487)
T ss_dssp             SCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-E
T ss_pred             CCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-C
Confidence            555666666777788888888888887766666665 577788888887777643 32 2246777788888777764 3


Q ss_pred             cHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           81 PESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      |..+..+++|+.+++++|.++ .+|..++.++.|+
T Consensus       207 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~  240 (487)
T 3oja_A          207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE  240 (487)
T ss_dssp             CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred             CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCC
Confidence            444777777888888888874 4666666665553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.53  E-value=3.8e-14  Score=89.67  Aligned_cols=96  Identities=19%  Similarity=0.263  Sum_probs=57.5

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |.+.+..+..+..+++|+.|++++|.+++..|..+..+++|+++++++|.+. .+|..+.  ++|+.+++++|.+....+
T Consensus        64 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~  140 (332)
T 2ft3_A           64 NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPK  140 (332)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCS
T ss_pred             CcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCH
Confidence            3444444555666666666666666665555556666666666666666665 4554433  556666666666654434


Q ss_pred             HHHhcccCCCEEecccCcc
Q 035618           82 ESLGKLLKLHYLDLSKNQF  100 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l  100 (116)
                      ..+..+++|+.+++++|.+
T Consensus       141 ~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          141 GVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             GGGSSCSSCCEEECCSCCC
T ss_pred             hHhCCCccCCEEECCCCcc
Confidence            4466666677777776666

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.53  E-value=3.6e-14  Score=91.45  Aligned_cols=101  Identities=19%  Similarity=0.201  Sum_probs=87.2

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchh-hhccCCCCeEEeeceeeccCC
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE-ISSFIKLEDIGLSINRFISSI   80 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~   80 (116)
                      |.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.+++++|.+. .+|.. +..+++|+.+++++|.+.+..
T Consensus        79 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~  157 (390)
T 3o6n_A           79 LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIE  157 (390)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccC
Confidence            5566666678999999999999999997777777889999999999999998 67765 688999999999999998777


Q ss_pred             cHHHhcccCCCEEecccCccccc
Q 035618           81 PESLGKLLKLHYLDLSKNQFFQE  103 (116)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~  103 (116)
                      +..+..+++|+.+++++|.+++.
T Consensus       158 ~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          158 DDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             TTTTSSCTTCCEEECCSSCCSBC
T ss_pred             hhhccCCCCCCEEECCCCcCCcc
Confidence            77789999999999999999554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.53  E-value=1.4e-14  Score=98.87  Aligned_cols=107  Identities=23%  Similarity=0.111  Sum_probs=67.7

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |.+.+..|..+..+++|+.|++++|.+....+..+..+++|+++++++|.+.+..+..+..+++|+.+++++|.+.+..+
T Consensus        59 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  138 (680)
T 1ziw_A           59 NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL  138 (680)
T ss_dssp             SCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC
T ss_pred             CccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc
Confidence            44555556666677777777777777643333356667777777777777663333556667777777777776665555


Q ss_pred             HHHhcccCCCEEecccCccccccchHH
Q 035618           82 ESLGKLLKLHYLDLSKNQFFQELPKEL  108 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~  108 (116)
                      ..+..+++|+.+++++|.+++..+..+
T Consensus       139 ~~~~~l~~L~~L~L~~n~l~~~~~~~~  165 (680)
T 1ziw_A          139 GTQVQLENLQELLLSNNKIQALKSEEL  165 (680)
T ss_dssp             CSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred             hhhcccccCCEEEccCCcccccCHHHh
Confidence            556666666777777666655444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.53  E-value=3.7e-14  Score=95.58  Aligned_cols=94  Identities=26%  Similarity=0.318  Sum_probs=85.1

Q ss_pred             ccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecc
Q 035618           17 HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLS   96 (116)
Q Consensus        17 ~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~   96 (116)
                      .|+.|++++|.+++ +|. +..+++|+.+++++|.+. .+|..++.+++|+.|++++|.+++ +| .+..+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            47899999999954 675 899999999999999999 899999999999999999999975 67 79999999999999


Q ss_pred             cCcccccc-chHHhhhcCCC
Q 035618           97 KNQFFQEL-PKELEKVVQLS  115 (116)
Q Consensus        97 ~n~l~~~~-p~~~~~l~~L~  115 (116)
                      +|.+++.. |..++.+++|+
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~  536 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLV  536 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCC
T ss_pred             CCCCCCCCCcHHHhcCCCCC
Confidence            99997665 89999999886

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=1.2e-15  Score=90.36  Aligned_cols=99  Identities=21%  Similarity=0.261  Sum_probs=71.1

Q ss_pred             CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCC
Q 035618           11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKL   90 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l   90 (116)
                      .+..+++|+.|++++|.+.+ +| .+..+++|+.+++++|.+. .+|..+..+++|+.+++++|.+.+ +| .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence            67778888888888888744 56 7777888888888888887 677777677778888888887754 44 46667777


Q ss_pred             CEEecccCccccccc--hHHhhhcCCC
Q 035618           91 HYLDLSKNQFFQELP--KELEKVVQLS  115 (116)
Q Consensus        91 ~~l~l~~n~l~~~~p--~~~~~l~~L~  115 (116)
                      +.+++++|.+ ..++  ..+..+++|+
T Consensus       118 ~~L~l~~N~i-~~~~~~~~l~~l~~L~  143 (198)
T 1ds9_A          118 RVLYMSNNKI-TNWGEIDKLAALDKLE  143 (198)
T ss_dssp             SEEEESEEEC-CCHHHHHHHTTTTTCS
T ss_pred             CEEECCCCcC-CchhHHHHHhcCCCCC
Confidence            7777777777 3333  2455565554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.52  E-value=2.9e-14  Score=82.66  Aligned_cols=96  Identities=21%  Similarity=0.205  Sum_probs=80.8

Q ss_pred             ccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecc
Q 035618           17 HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLS   96 (116)
Q Consensus        17 ~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~   96 (116)
                      ..+.+++++|.+ ..+|..+  ..+++.+++++|.+.+..|..+..+++|+.|++++|++.+..+..|..+++|+.|+++
T Consensus        10 ~~~~l~~s~n~l-~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSL-ASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCc-CccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            357899999998 5577655  3789999999999996667789999999999999999986666668899999999999


Q ss_pred             cCccccccchHHhhhcCCC
Q 035618           97 KNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        97 ~n~l~~~~p~~~~~l~~L~  115 (116)
                      +|.+++..+..|..+++|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~  105 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLT  105 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCC
T ss_pred             CCccCEeCHHHhcCCCCCC
Confidence            9999666556688888775

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.52  E-value=5.1e-14  Score=92.11  Aligned_cols=108  Identities=19%  Similarity=0.176  Sum_probs=90.8

Q ss_pred             cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHh
Q 035618            6 GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLG   85 (116)
Q Consensus         6 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~   85 (116)
                      ..+|..+.  +.++.|++++|.+....+..+..+++|+.+++++|.+....+..+..+++|+.|++++|.+....+..+.
T Consensus        56 ~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  133 (440)
T 3zyj_A           56 REVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV  133 (440)
T ss_dssp             SSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC
T ss_pred             CcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh
Confidence            45666554  6789999999999777778899999999999999999966667899999999999999998765556789


Q ss_pred             cccCCCEEecccCccccccchHHhhhcCCC
Q 035618           86 KLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        86 ~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      .+++|+.|++++|.+.+..+..|..+++|+
T Consensus       134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  163 (440)
T 3zyj_A          134 YLSKLKELWLRNNPIESIPSYAFNRIPSLR  163 (440)
T ss_dssp             SCSSCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred             ccccCceeeCCCCcccccCHHHhhhCcccC
Confidence            999999999999999655555677777665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.51  E-value=7.8e-14  Score=88.66  Aligned_cols=97  Identities=21%  Similarity=0.140  Sum_probs=82.5

Q ss_pred             ccccCcCccCCcccceeeccc-cccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHH
Q 035618            5 TGDIPCEIGKSSHLHAFDLLF-NHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPES   83 (116)
Q Consensus         5 ~~~~~~~~~~l~~L~~l~l~~-n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~   83 (116)
                      ...+|. +..+++|+.|++++ |.+.+..+..|..+++|+.|++++|.+.+..|..|..+++|+.|++++|++.+..+..
T Consensus        21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~   99 (347)
T 2ifg_A           21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT   99 (347)
T ss_dssp             CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT
T ss_pred             CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHH
Confidence            455888 99999999999996 9997776678999999999999999999777778999999999999999997554445


Q ss_pred             HhcccCCCEEecccCccccc
Q 035618           84 LGKLLKLHYLDLSKNQFFQE  103 (116)
Q Consensus        84 ~~~~~~l~~l~l~~n~l~~~  103 (116)
                      +..+. |+.|++.+|.+...
T Consensus       100 ~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A          100 VQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             TCSCC-CCEEECCSSCCCCC
T ss_pred             cccCC-ceEEEeeCCCccCC
Confidence            55555 99999999998543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.51  E-value=4.1e-14  Score=94.97  Aligned_cols=99  Identities=23%  Similarity=0.203  Sum_probs=86.0

Q ss_pred             CCccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeecc-C
Q 035618            1 MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFIS-S   79 (116)
Q Consensus         1 ~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~   79 (116)
                      +|.+.+..+..+..+++|+.|++++|.+++..|..+..+++|+++++++|.+. .+|..  .+++|+.|++++|.+.+ .
T Consensus        61 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~  137 (562)
T 3a79_B           61 QNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLP  137 (562)
T ss_dssp             SSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCC
T ss_pred             CCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccC
Confidence            35666666778999999999999999997777888999999999999999998 67776  78999999999999876 4


Q ss_pred             CcHHHhcccCCCEEecccCcccc
Q 035618           80 IPESLGKLLKLHYLDLSKNQFFQ  102 (116)
Q Consensus        80 ~~~~~~~~~~l~~l~l~~n~l~~  102 (116)
                      +|..+..+++|+.|++++|.+.+
T Consensus       138 ~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          138 VCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CCGGGGGCTTCCEEEEECSBCCT
T ss_pred             chHhhcccCcccEEecCCCcccc
Confidence            46789999999999999999855

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.50  E-value=4.7e-14  Score=82.11  Aligned_cols=95  Identities=19%  Similarity=0.248  Sum_probs=79.3

Q ss_pred             cceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEeccc
Q 035618           18 LHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSK   97 (116)
Q Consensus        18 L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~   97 (116)
                      -+.+++++|.+ +.+|..+.  ++++.+++++|.+.+..|..+..+++|+.|++++|++.+..+..|..+++|+.|++++
T Consensus        14 ~~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            36889999998 67777654  7999999999999966677899999999999999999865555678999999999999


Q ss_pred             CccccccchHHhhhcCCC
Q 035618           98 NQFFQELPKELEKVVQLS  115 (116)
Q Consensus        98 n~l~~~~p~~~~~l~~L~  115 (116)
                      |.+.+..+..|..+++|+
T Consensus        91 N~l~~l~~~~~~~l~~L~  108 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLT  108 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCS
T ss_pred             CccceeCHHHhccccCCC
Confidence            999655444588888775

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.50  E-value=3.4e-14  Score=89.51  Aligned_cols=110  Identities=21%  Similarity=0.241  Sum_probs=67.5

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhc-CCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLG-KLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI   80 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~   80 (116)
                      |.+.+..+..+..+++|+.|++++|.+.+..+..+. .+++|+.+++++|.+.+ ++.. ..+++|+.+++++|.+.+ +
T Consensus       130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~-~~l~~L~~L~Ls~N~l~~-l  206 (317)
T 3o53_A          130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQ-VVFAKLKTLDLSSNKLAF-M  206 (317)
T ss_dssp             SCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EECC-CCCTTCCEEECCSSCCCE-E
T ss_pred             CCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-cccc-cccccCCEEECCCCcCCc-c
Confidence            444455555666777777777777777555555543 46677777777776663 2322 235667777777776653 3


Q ss_pred             cHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           81 PESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      |..+..+++|+.+++++|.+ ..+|..+..+++|+
T Consensus       207 ~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~l~~L~  240 (317)
T 3o53_A          207 GPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLE  240 (317)
T ss_dssp             CGGGGGGTTCSEEECTTSCC-CEECTTCCCCTTCC
T ss_pred             hhhhcccCcccEEECcCCcc-cchhhHhhcCCCCC
Confidence            44466666777777777776 34565555555553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.48  E-value=3.3e-13  Score=85.66  Aligned_cols=98  Identities=23%  Similarity=0.283  Sum_probs=63.6

Q ss_pred             ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH   91 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~   91 (116)
                      +..+++|+.|++++|.+.. + +.+..+++|+.+++++|.+. .+ +.+..+++|+.+++++|.+.+..+..+..+++|+
T Consensus       239 ~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQIS-DI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred             hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccC-CC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence            5566666666666666633 2 34566677777777777666 23 3456677777777777777666666677777777


Q ss_pred             EEecccCccccccchHHhhhcCCC
Q 035618           92 YLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        92 ~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      .+++++|.+++..|  +..++.|+
T Consensus       315 ~L~L~~n~l~~~~~--~~~l~~L~  336 (347)
T 4fmz_A          315 TLFLSQNHITDIRP--LASLSKMD  336 (347)
T ss_dssp             EEECCSSSCCCCGG--GGGCTTCS
T ss_pred             EEEccCCccccccC--hhhhhccc
Confidence            77777777755444  55555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=1.2e-13  Score=80.40  Aligned_cols=100  Identities=20%  Similarity=0.150  Sum_probs=82.2

Q ss_pred             CccCCcccceeeccccccccccchhhcCCC-CCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccC
Q 035618           11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLN-SLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLK   89 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~-~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~   89 (116)
                      .+..+.+|+.|++++|.+. .++. +..+. +|+.+++++|.+.+ + ..+..+++|+.+++++|.+.+..+..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            3567889999999999995 4554 55544 99999999999985 3 67888999999999999987554455689999


Q ss_pred             CCEEecccCccccccch--HHhhhcCCC
Q 035618           90 LHYLDLSKNQFFQELPK--ELEKVVQLS  115 (116)
Q Consensus        90 l~~l~l~~n~l~~~~p~--~~~~l~~L~  115 (116)
                      |+.+++++|.+ +.+|.  .++.++.|+
T Consensus        90 L~~L~L~~N~i-~~~~~~~~l~~l~~L~  116 (176)
T 1a9n_A           90 LTELILTNNSL-VELGDLDPLASLKSLT  116 (176)
T ss_dssp             CCEEECCSCCC-CCGGGGGGGGGCTTCC
T ss_pred             CCEEECCCCcC-CcchhhHhhhcCCCCC
Confidence            99999999999 77776  678887775

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.47  E-value=5.2e-13  Score=83.31  Aligned_cols=83  Identities=25%  Similarity=0.294  Sum_probs=33.3

Q ss_pred             ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH   91 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~   91 (116)
                      +..+++|+.|++++|.+.+ ++ .+..+++|+.+++++|.+.+ + ..+..+++|+.|++++|.+.+.  ..+..+++|+
T Consensus        86 l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~  159 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD  159 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred             cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCC
Confidence            3344444444444444322 11 23344444444444444431 1 2333444444444444443321  2333444444


Q ss_pred             EEecccCcc
Q 035618           92 YLDLSKNQF  100 (116)
Q Consensus        92 ~l~l~~n~l  100 (116)
                      .|++++|.+
T Consensus       160 ~L~L~~N~l  168 (291)
T 1h6t_A          160 TLSLEDNQI  168 (291)
T ss_dssp             EEECCSSCC
T ss_pred             EEEccCCcc
Confidence            444444444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.47  E-value=5.2e-14  Score=93.30  Aligned_cols=111  Identities=23%  Similarity=0.153  Sum_probs=72.4

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchh-----------------hhccC
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE-----------------ISSFI   64 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-----------------~~~~~   64 (116)
                      |.+.+..|..+..+++|+.|++++|.+++..|  +..+++|+.+++++|.+.+ ++..                 ...++
T Consensus        44 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~~~~L~~L~L~~N~l~~~~~~~l~  120 (487)
T 3oja_A           44 NPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LLVGPSIETLHAANNNISRVSCSRGQ  120 (487)
T ss_dssp             SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EEECTTCCEEECCSSCCCCEEECCCS
T ss_pred             CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CCCCCCcCEEECcCCcCCCCCccccC
Confidence            55556566677788888888888888755444  6677777777777776653 2210                 01234


Q ss_pred             CCCeEEeeceeeccCCcHHHhcccCCCEEecccCccccccchHHh-hhcCCC
Q 035618           65 KLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELE-KVVQLS  115 (116)
Q Consensus        65 ~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~-~l~~L~  115 (116)
                      +|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+. .++.|+
T Consensus       121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~  172 (487)
T 3oja_A          121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE  172 (487)
T ss_dssp             SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred             CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence            566666666666655565667777788888888887766666654 455554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.46  E-value=5.1e-14  Score=85.42  Aligned_cols=91  Identities=16%  Similarity=0.122  Sum_probs=49.0

Q ss_pred             cCcCccCCcccceeeccc-cccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCC---eEEeece-eeccCCcH
Q 035618            8 IPCEIGKSSHLHAFDLLF-NHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLE---DIGLSIN-RFISSIPE   82 (116)
Q Consensus         8 ~~~~~~~l~~L~~l~l~~-n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~---~l~l~~n-~~~~~~~~   82 (116)
                      .+..+..+++|+.|++++ |.+....+..+..+++|+.+++++|.+. .+|. +..+.+|+   .+++++| .+....+.
T Consensus        72 ~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~  149 (239)
T 2xwt_C           72 ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVN  149 (239)
T ss_dssp             CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTT
T ss_pred             CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcc
Confidence            334566666667777666 6664444445556666666666666655 3444 44444444   5555555 44332223


Q ss_pred             HHhcccCCC-EEecccCcc
Q 035618           83 SLGKLLKLH-YLDLSKNQF  100 (116)
Q Consensus        83 ~~~~~~~l~-~l~l~~n~l  100 (116)
                      .|..+++|+ .+++++|.+
T Consensus       150 ~~~~l~~L~~~L~l~~n~l  168 (239)
T 2xwt_C          150 AFQGLCNETLTLKLYNNGF  168 (239)
T ss_dssp             TTTTTBSSEEEEECCSCCC
T ss_pred             cccchhcceeEEEcCCCCC
Confidence            344555555 555555555

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.45  E-value=9.6e-14  Score=87.16  Aligned_cols=75  Identities=16%  Similarity=0.006  Sum_probs=38.6

Q ss_pred             CccccccCcCc--cCCcccceeeccccccccccc----hhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeecee
Q 035618            2 NNSTGDIPCEI--GKSSHLHAFDLLFNHLFVEIP----NDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR   75 (116)
Q Consensus         2 n~~~~~~~~~~--~~l~~L~~l~l~~n~~~~~~~----~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~   75 (116)
                      |.+.+..|..+  ..+++|+.|++++|.+.+..+    ..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|+
T Consensus       101 n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  180 (310)
T 4glp_A          101 LKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP  180 (310)
T ss_dssp             CCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT
T ss_pred             CEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC
Confidence            44555555555  556666666666666544322    222345555555555555543333444455555555555554


Q ss_pred             e
Q 035618           76 F   76 (116)
Q Consensus        76 ~   76 (116)
                      +
T Consensus       181 l  181 (310)
T 4glp_A          181 G  181 (310)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=3.9e-15  Score=88.15  Aligned_cols=104  Identities=22%  Similarity=0.291  Sum_probs=86.0

Q ss_pred             cCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc-HHHhc
Q 035618            8 IPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP-ESLGK   86 (116)
Q Consensus         8 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~   86 (116)
                      +| .+..+++|+.|++++|.+. .+|..+..+++|+.+++++|.+.+ +| .+..+++|+.+++++|.+...-+ ..+..
T Consensus        63 l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~  138 (198)
T 1ds9_A           63 IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAA  138 (198)
T ss_dssp             CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTT
T ss_pred             cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhc
Confidence            66 7888999999999999994 678777778999999999999984 55 68889999999999999864222 46889


Q ss_pred             ccCCCEEecccCccccccch----------HHhhhcCCC
Q 035618           87 LLKLHYLDLSKNQFFQELPK----------ELEKVVQLS  115 (116)
Q Consensus        87 ~~~l~~l~l~~n~l~~~~p~----------~~~~l~~L~  115 (116)
                      +++|+.+++++|.+.+..|.          .+..+++|+
T Consensus       139 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~  177 (198)
T 1ds9_A          139 LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             TTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred             CCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence            99999999999999776654          267777765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.44  E-value=5e-14  Score=88.70  Aligned_cols=109  Identities=23%  Similarity=0.245  Sum_probs=89.0

Q ss_pred             CccccccCcCcc-CCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC
Q 035618            2 NNSTGDIPCEIG-KSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI   80 (116)
Q Consensus         2 n~~~~~~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~   80 (116)
                      |.+.+..+..+. .+++|+.|++++|.++.. +. ...+++|+.+++++|.+. .+|..+..+++|+.+++++|.+. .+
T Consensus       154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l  229 (317)
T 3o53_A          154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LI  229 (317)
T ss_dssp             SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EE
T ss_pred             CCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-ch
Confidence            566666666664 689999999999998554 43 345899999999999999 56777889999999999999987 57


Q ss_pred             cHHHhcccCCCEEecccCccc-cccchHHhhhcCC
Q 035618           81 PESLGKLLKLHYLDLSKNQFF-QELPKELEKVVQL  114 (116)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~-~~~p~~~~~l~~L  114 (116)
                      |..+..+++|+.+++++|.+. +.+|..+..++.|
T Consensus       230 ~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L  264 (317)
T 3o53_A          230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV  264 (317)
T ss_dssp             CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred             hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence            888889999999999999997 5677777766543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.44  E-value=8e-14  Score=88.06  Aligned_cols=104  Identities=17%  Similarity=0.173  Sum_probs=67.6

Q ss_pred             ccCCcccceeeccccccccc-cchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeece-eecc-CCcHHHhccc
Q 035618           12 IGKSSHLHAFDLLFNHLFVE-IPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSIN-RFIS-SIPESLGKLL   88 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~-~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n-~~~~-~~~~~~~~~~   88 (116)
                      +..+++|+.|++++|.+... ++..+..+++|+.+++++|.+.+..+..+..+++|+.|++++| .+++ .++..+..++
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~  168 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  168 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence            45677777777777776544 5566667777777777777766556666666777777777776 4443 2444566677


Q ss_pred             CCCEEecccC-ccccc-cchHHhhhc-CCC
Q 035618           89 KLHYLDLSKN-QFFQE-LPKELEKVV-QLS  115 (116)
Q Consensus        89 ~l~~l~l~~n-~l~~~-~p~~~~~l~-~L~  115 (116)
                      +|+.|++++| .+++. ++..+..++ +|+
T Consensus       169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~  198 (336)
T 2ast_B          169 RLDELNLSWCFDFTEKHVQVAVAHVSETIT  198 (336)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred             CCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence            7777777777 66443 455566665 554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.44  E-value=1.1e-12  Score=82.46  Aligned_cols=17  Identities=18%  Similarity=0.241  Sum_probs=7.1

Q ss_pred             ccCCcccceeecccccc
Q 035618           12 IGKSSHLHAFDLLFNHL   28 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~   28 (116)
                      +..+++|+.|++++|.+
T Consensus        59 ~~~l~~L~~L~L~~n~i   75 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQI   75 (308)
T ss_dssp             GGGCTTCCEEECCSSCC
T ss_pred             hhccCCCCEEEccCCcC
Confidence            33344444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.43  E-value=6.9e-14  Score=87.82  Aligned_cols=26  Identities=19%  Similarity=-0.010  Sum_probs=12.1

Q ss_pred             ccccccCcCccCCcccceeecccccc
Q 035618            3 NSTGDIPCEIGKSSHLHAFDLLFNHL   28 (116)
Q Consensus         3 ~~~~~~~~~~~~l~~L~~l~l~~n~~   28 (116)
                      .+.+..+..+..+++|+.|++++|.+
T Consensus       156 ~l~~~~~~~~~~l~~L~~L~Ls~N~l  181 (310)
T 4glp_A          156 HSPAFSCEQVRAFPALTSLDLSDNPG  181 (310)
T ss_dssp             SSCCCCTTSCCCCTTCCEEECCSCTT
T ss_pred             CcchhhHHHhccCCCCCEEECCCCCC
Confidence            33333344444455555555555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.43  E-value=1.5e-12  Score=81.19  Aligned_cols=97  Identities=31%  Similarity=0.399  Sum_probs=78.6

Q ss_pred             CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCC
Q 035618           11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKL   90 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l   90 (116)
                      .+..+++|+.|++++|.+.+ + +.+..+++|+.+++++|.+.+ + ..+..+++|+.|++++|.+.+..+  +..+++|
T Consensus       107 ~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L  180 (291)
T 1h6t_A          107 SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL  180 (291)
T ss_dssp             GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchh--hcCCCcc
Confidence            37888999999999999855 3 467889999999999999884 4 677888999999999998875443  7888999


Q ss_pred             CEEecccCccccccchHHhhhcCCC
Q 035618           91 HYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        91 ~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      +.+++++|.+ +.+|. +..+++|+
T Consensus       181 ~~L~L~~N~i-~~l~~-l~~l~~L~  203 (291)
T 1h6t_A          181 QNLYLSKNHI-SDLRA-LAGLKNLD  203 (291)
T ss_dssp             CEEECCSSCC-CBCGG-GTTCTTCS
T ss_pred             CEEECCCCcC-CCChh-hccCCCCC
Confidence            9999999999 45554 77777665

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.41  E-value=1.8e-12  Score=82.28  Aligned_cols=98  Identities=22%  Similarity=0.295  Sum_probs=79.4

Q ss_pred             ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH   91 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~   91 (116)
                      +..+++|+.|++++|.+.. .+. +..+++|+.+++++|.+.. + +.+..+++|+.+++++|.+.+ + ..+..+++|+
T Consensus       217 ~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~  290 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLN  290 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCS
T ss_pred             hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCC
Confidence            6677888888888888844 443 7788899999999988873 3 467788899999999998764 3 4578889999


Q ss_pred             EEecccCccccccchHHhhhcCCC
Q 035618           92 YLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        92 ~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      .+++++|.+.+..|..++.+++|+
T Consensus       291 ~L~L~~n~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          291 SLFLNNNQLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             EEECCSSCCCGGGHHHHHTCTTCS
T ss_pred             EEECcCCcCCCcChhHhhccccCC
Confidence            999999999888888888888875

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.41  E-value=1.7e-12  Score=79.98  Aligned_cols=96  Identities=22%  Similarity=0.216  Sum_probs=53.8

Q ss_pred             CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCC
Q 035618           11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKL   90 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l   90 (116)
                      .+..+++|+.|++++|.+++ +++ +..+++|+.+++++|.+. .++... . .+|+.|++++|.+.+ ++ .+..+++|
T Consensus        58 ~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~-~l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L  130 (263)
T 1xeu_A           58 GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLK-NLNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNL  130 (263)
T ss_dssp             TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCS-CCTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTC
T ss_pred             HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccC-CcCccc-c-CcccEEEccCCccCC-Ch-hhcCcccc
Confidence            46666777777777777643 333 666777777777777666 333321 1 555555555555543 22 35555666


Q ss_pred             CEEecccCccccccchHHhhhcCCC
Q 035618           91 HYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        91 ~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      +.|++++|.++ .++ .++.++.|+
T Consensus       131 ~~L~Ls~N~i~-~~~-~l~~l~~L~  153 (263)
T 1xeu_A          131 EILSIRNNKLK-SIV-MLGFLSKLE  153 (263)
T ss_dssp             CEEECTTSCCC-BCG-GGGGCTTCC
T ss_pred             cEEECCCCcCC-CCh-HHccCCCCC
Confidence            66666666663 233 344444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.41  E-value=4.6e-13  Score=85.72  Aligned_cols=107  Identities=20%  Similarity=0.229  Sum_probs=63.8

Q ss_pred             CccccccCcCccCCcccceeeccccccccccc----hhhcCCC-CCCeEecccCcceecCchhhhcc-----CCCCeEEe
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIP----NDLGKLN-SLTKLILKWNQFTGRLPPEISSF-----IKLEDIGL   71 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~----~~~~~l~-~l~~l~l~~~~~~~~~~~~~~~~-----~~L~~l~l   71 (116)
                      |++.+.+|..+...++|+.|++++|.++...+    ..+..++ +|+.+++++|.+.+..+..+..+     ++|+.|++
T Consensus         8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L   87 (362)
T 3goz_A            8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL   87 (362)
T ss_dssp             CTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred             ccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence            44555555555555557777777777654444    4555666 67777777777765445555443     66777777


Q ss_pred             eceeeccCCcHHHhc----c-cCCCEEecccCccccccchHH
Q 035618           72 SINRFISSIPESLGK----L-LKLHYLDLSKNQFFQELPKEL  108 (116)
Q Consensus        72 ~~n~~~~~~~~~~~~----~-~~l~~l~l~~n~l~~~~p~~~  108 (116)
                      ++|.+.+..+..+..    . ++|+.|++++|.+++..+..+
T Consensus        88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  129 (362)
T 3goz_A           88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF  129 (362)
T ss_dssp             CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH
Confidence            777665554443332    2 566677777766644444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.41  E-value=2e-12  Score=81.21  Aligned_cols=83  Identities=25%  Similarity=0.314  Sum_probs=35.7

Q ss_pred             ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH   91 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~   91 (116)
                      +..+++|+.|++++|.+.+ ++. +..+++|+.+++++|.+. .++. +..+++|+.+++++|.+.+. +. +..+++|+
T Consensus       125 l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~  198 (308)
T 1h6u_A          125 LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKISDI-SP-LASLPNLI  198 (308)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCC
T ss_pred             hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCC-CChh-hcCCCCCCEEECCCCccCcC-hh-hcCCCCCC
Confidence            3334444444444444422 111 334444444444444444 2222 44444455555555544322 21 44455555


Q ss_pred             EEecccCcc
Q 035618           92 YLDLSKNQF  100 (116)
Q Consensus        92 ~l~l~~n~l  100 (116)
                      .+++++|.+
T Consensus       199 ~L~L~~N~l  207 (308)
T 1h6u_A          199 EVHLKNNQI  207 (308)
T ss_dssp             EEECTTSCC
T ss_pred             EEEccCCcc
Confidence            555555555

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.40  E-value=7e-14  Score=88.32  Aligned_cols=104  Identities=21%  Similarity=0.262  Sum_probs=42.3

Q ss_pred             CccCCcccceeecccc-cccc-ccchhhcCCCCCCeEecccC-cceec-CchhhhccC-CCCeEEeecee--ec-cCCcH
Q 035618           11 EIGKSSHLHAFDLLFN-HLFV-EIPNDLGKLNSLTKLILKWN-QFTGR-LPPEISSFI-KLEDIGLSINR--FI-SSIPE   82 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n-~~~~-~~~~~~~~l~~l~~l~l~~~-~~~~~-~~~~~~~~~-~L~~l~l~~n~--~~-~~~~~   82 (116)
                      .+..+++|+.|++++| .+++ .++..+..+++|+.+++++| .+.+. ++..+..++ +|+.|++++|.  ++ ..++.
T Consensus       137 ~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~  216 (336)
T 2ast_B          137 TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST  216 (336)
T ss_dssp             HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence            3334444444444444 2322 12222333444444444444 33321 233334444 44444444442  21 12233


Q ss_pred             HHhcccCCCEEecccCc-cccccchHHhhhcCC
Q 035618           83 SLGKLLKLHYLDLSKNQ-FFQELPKELEKVVQL  114 (116)
Q Consensus        83 ~~~~~~~l~~l~l~~n~-l~~~~p~~~~~l~~L  114 (116)
                      .+..+++|+.|++++|. +++..+..+..+++|
T Consensus       217 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L  249 (336)
T 2ast_B          217 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  249 (336)
T ss_dssp             HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence            34444555555555555 333344444444444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.40  E-value=1.8e-12  Score=88.02  Aligned_cols=60  Identities=35%  Similarity=0.448  Sum_probs=25.0

Q ss_pred             cCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccCcc
Q 035618           37 GKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF  100 (116)
Q Consensus        37 ~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l  100 (116)
                      ..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+.+..|  +..+++|+.|++++|.+
T Consensus       128 ~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          128 VHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             GGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             cCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence            334444444444444431 1 233344444444444444433222  44444444444444444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.38  E-value=2.1e-12  Score=79.53  Aligned_cols=103  Identities=22%  Similarity=0.283  Sum_probs=72.2

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |.+.+. +. +..+++|+.|++++|.+.+ +|. +.. ++|+.+++++|.+.+ + +.+..+++|+.|++++|++.+ ++
T Consensus        73 N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~  144 (263)
T 1xeu_A           73 NQISDL-SP-LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV  144 (263)
T ss_dssp             SCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG
T ss_pred             CccCCC-hh-hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch
Confidence            444443 33 7888899999999998844 443 223 788888888888873 3 357778888888888888764 33


Q ss_pred             HHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           82 ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                       .+..+++|+.+++++|.+.+.  ..+..++.|+
T Consensus       145 -~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~  175 (263)
T 1xeu_A          145 -MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVN  175 (263)
T ss_dssp             -GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCC
T ss_pred             -HHccCCCCCEEECCCCcCcch--HHhccCCCCC
Confidence             577788888888888888444  4466666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.36  E-value=5.4e-12  Score=85.72  Aligned_cols=104  Identities=26%  Similarity=0.304  Sum_probs=77.1

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |.+.+..+  +..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+ + +.+..+++|+.|++++|.+.+.  
T Consensus        75 N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--  146 (605)
T 1m9s_A           75 NKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--  146 (605)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--
T ss_pred             CCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--
Confidence            44444333  7788888888888888844 33 67788888888888888873 3 4577888888888888887653  


Q ss_pred             HHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           82 ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      ..+..+++|+.|++++|.+.+..|  +..+++|+
T Consensus       147 ~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~  178 (605)
T 1m9s_A          147 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ  178 (605)
T ss_dssp             GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             hhhcccCCCCEEECcCCcCCCchh--hccCCCCC
Confidence            567788888888888888865544  66666664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.36  E-value=4.1e-12  Score=83.69  Aligned_cols=95  Identities=25%  Similarity=0.347  Sum_probs=47.0

Q ss_pred             ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH   91 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~   91 (116)
                      +..+++|+.|++++|.+.+. ++ +..+++|+.+++++|.+.+..|  +..+++|+.+++++|.+.+.  ..+..+++|+
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~  356 (466)
T 1o6v_A          283 LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNIN  356 (466)
T ss_dssp             GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCC
T ss_pred             ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCC
Confidence            34444455555555544322 21 4445555555555555543222  44555555555555555432  2355556666


Q ss_pred             EEecccCccccccchHHhhhcCC
Q 035618           92 YLDLSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        92 ~l~l~~n~l~~~~p~~~~~l~~L  114 (116)
                      .+++++|.+++..|  +..+++|
T Consensus       357 ~L~l~~n~l~~~~~--~~~l~~L  377 (466)
T 1o6v_A          357 WLSAGHNQISDLTP--LANLTRI  377 (466)
T ss_dssp             EEECCSSCCCBCGG--GTTCTTC
T ss_pred             EEeCCCCccCccch--hhcCCCC
Confidence            66666666644444  4444444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.34  E-value=1.9e-12  Score=82.26  Aligned_cols=89  Identities=15%  Similarity=0.126  Sum_probs=75.0

Q ss_pred             eeecccc-ccccccchhhcCCCCCCeEeccc-CcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEeccc
Q 035618           20 AFDLLFN-HLFVEIPNDLGKLNSLTKLILKW-NQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSK   97 (116)
Q Consensus        20 ~l~l~~n-~~~~~~~~~~~~l~~l~~l~l~~-~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~   97 (116)
                      .++.+++ .+ ..+|. +..+.+|+.|++++ |.+.+..+..|..+.+|+.|++++|++.+..|..|..+++|+.|+|++
T Consensus        12 ~v~~~~~n~l-~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGAL-DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCC-TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCC-CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4578887 77 56888 98999999999996 999965567899999999999999999988888899999999999999


Q ss_pred             CccccccchHHhh
Q 035618           98 NQFFQELPKELEK  110 (116)
Q Consensus        98 n~l~~~~p~~~~~  110 (116)
                      |.+++..+..+..
T Consensus        90 N~l~~~~~~~~~~  102 (347)
T 2ifg_A           90 NALESLSWKTVQG  102 (347)
T ss_dssp             SCCSCCCSTTTCS
T ss_pred             CccceeCHHHccc
Confidence            9996544444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.30  E-value=1.7e-11  Score=80.68  Aligned_cols=96  Identities=25%  Similarity=0.312  Sum_probs=45.4

Q ss_pred             ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH   91 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~   91 (116)
                      +..+++|+.|++++|.+.+. ++ +..+++|+.+++++|.+.+ ++. +..+++|+.+++++|.+.+..|  +..+++|+
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  334 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ  334 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred             hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence            34444444444444444222 21 4445555555555555542 222 4455555555555555544332  44555566


Q ss_pred             EEecccCccccccchHHhhhcCCC
Q 035618           92 YLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        92 ~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      .+++++|.+++. + .+..+++|+
T Consensus       335 ~L~l~~n~l~~~-~-~l~~l~~L~  356 (466)
T 1o6v_A          335 RLFFYNNKVSDV-S-SLANLTNIN  356 (466)
T ss_dssp             EEECCSSCCCCC-G-GGTTCTTCC
T ss_pred             EeECCCCccCCc-h-hhccCCCCC
Confidence            666666655332 2 344444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.30  E-value=7.7e-13  Score=85.20  Aligned_cols=91  Identities=22%  Similarity=0.260  Sum_probs=45.2

Q ss_pred             ccCCcccceeecccccccc-----ccchhhcCCCCCCeEecccCcce----ecCchhhhccCCCCeEEeeceeeccC---
Q 035618           12 IGKSSHLHAFDLLFNHLFV-----EIPNDLGKLNSLTKLILKWNQFT----GRLPPEISSFIKLEDIGLSINRFISS---   79 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~-----~~~~~~~~l~~l~~l~l~~~~~~----~~~~~~~~~~~~L~~l~l~~n~~~~~---   79 (116)
                      +..+++|+.|++++|.++.     ..+..+..+++|+.+++++|.+.    ..+|..+..+++|+.|++++|.+.+.   
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            3344555555555555531     12224445555555555555553    23444555555555555555555432   


Q ss_pred             -CcHHHhc--ccCCCEEecccCcccc
Q 035618           80 -IPESLGK--LLKLHYLDLSKNQFFQ  102 (116)
Q Consensus        80 -~~~~~~~--~~~l~~l~l~~n~l~~  102 (116)
                       ++..+..  +++|+.|++++|.+++
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCH
Confidence             2233322  5555555555555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.28  E-value=5.8e-12  Score=85.04  Aligned_cols=90  Identities=22%  Similarity=0.261  Sum_probs=61.7

Q ss_pred             CcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCC-------CeEEeeceeeccCCcHHHhcc
Q 035618           15 SSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKL-------EDIGLSINRFISSIPESLGKL   87 (116)
Q Consensus        15 l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L-------~~l~l~~n~~~~~~~~~~~~~   87 (116)
                      +++|+.|++++|.+++ +|. +.  ++|+.+++++|.+. .+|. +..  +|       +.|++++|.++ .+|..+..+
T Consensus       159 l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l  229 (571)
T 3cvr_A          159 PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSL  229 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGS
T ss_pred             CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcC
Confidence            4566666666666633 554 43  67777777777776 5666 433  56       77888888775 577777778


Q ss_pred             cCCCEEecccCccccccchHHhhhcC
Q 035618           88 LKLHYLDLSKNQFFQELPKELEKVVQ  113 (116)
Q Consensus        88 ~~l~~l~l~~n~l~~~~p~~~~~l~~  113 (116)
                      ++|+.+++++|.+++.+|..++.+..
T Consensus       230 ~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          230 DPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             CCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            88888888888888888887776643

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.28  E-value=3.8e-12  Score=81.48  Aligned_cols=92  Identities=17%  Similarity=0.207  Sum_probs=47.8

Q ss_pred             cCccCCc-ccceeeccccccccccchhhcCC-----CCCCeEecccCcceecCchhhhc----c-CCCCeEEeeceeecc
Q 035618           10 CEIGKSS-HLHAFDLLFNHLFVEIPNDLGKL-----NSLTKLILKWNQFTGRLPPEISS----F-IKLEDIGLSINRFIS   78 (116)
Q Consensus        10 ~~~~~l~-~L~~l~l~~n~~~~~~~~~~~~l-----~~l~~l~l~~~~~~~~~~~~~~~----~-~~L~~l~l~~n~~~~   78 (116)
                      ..+..++ +|+.|++++|.++...+..+..+     ++|+.+++++|.+.+..+..+..    + ++|+.|++++|.+.+
T Consensus        44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  123 (362)
T 3goz_A           44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS  123 (362)
T ss_dssp             HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence            3444555 66666666666655444444443     56666666666665444433222    2 556666666665544


Q ss_pred             CCcHHHhc-----ccCCCEEecccCccc
Q 035618           79 SIPESLGK-----LLKLHYLDLSKNQFF  101 (116)
Q Consensus        79 ~~~~~~~~-----~~~l~~l~l~~n~l~  101 (116)
                      ..+..+..     ..+|+.|++++|.+.
T Consensus       124 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A          124 KSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             SCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             HHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence            33333222     235555555555553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.25  E-value=2e-12  Score=83.23  Aligned_cols=39  Identities=28%  Similarity=0.238  Sum_probs=16.6

Q ss_pred             CCcccceeecccccccc----ccchhhcCCCCCCeEecccCcc
Q 035618           14 KSSHLHAFDLLFNHLFV----EIPNDLGKLNSLTKLILKWNQF   52 (116)
Q Consensus        14 ~l~~L~~l~l~~n~~~~----~~~~~~~~l~~l~~l~l~~~~~   52 (116)
                      .+++|+.|++++|.++.    .++..+..+++|+.+++++|.+
T Consensus        92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l  134 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  134 (386)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence            34444444444444433    1333334444444444444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.25  E-value=2.5e-11  Score=80.04  Aligned_cols=83  Identities=22%  Similarity=0.292  Sum_probs=46.4

Q ss_pred             CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCC
Q 035618           11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKL   90 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l   90 (116)
                      .+..+++|+.|++++|.+++ +|  +..+++|+++++++|.+.+ ++  +..+++|+.+++++|.+.+ ++  +..+++|
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L  129 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLL  129 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTC
T ss_pred             hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcC
Confidence            45556666666666666533 22  4555666666666666552 32  5555666666666665543 33  4555566


Q ss_pred             CEEecccCcccc
Q 035618           91 HYLDLSKNQFFQ  102 (116)
Q Consensus        91 ~~l~l~~n~l~~  102 (116)
                      +.+++++|.+++
T Consensus       130 ~~L~l~~N~l~~  141 (457)
T 3bz5_A          130 TYLNCARNTLTE  141 (457)
T ss_dssp             CEEECTTSCCSC
T ss_pred             CEEECCCCccce
Confidence            666666666533

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.22  E-value=1.7e-11  Score=80.75  Aligned_cols=97  Identities=24%  Similarity=0.268  Sum_probs=81.4

Q ss_pred             cCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcc
Q 035618            8 IPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKL   87 (116)
Q Consensus         8 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~   87 (116)
                      .+..+..+++|+.|++++|.+.+ +| .+..+++|+++++++|.+.+ ++  +..+++|+.+++++|.+.+. +  +..+
T Consensus        34 ~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l  105 (457)
T 3bz5_A           34 DTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPL  105 (457)
T ss_dssp             SEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred             cccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCC
Confidence            34457789999999999999965 45 68899999999999999984 55  78899999999999998763 4  7899


Q ss_pred             cCCCEEecccCccccccchHHhhhcCCC
Q 035618           88 LKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        88 ~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      ++|+.+++++|.+++ +|  ++.+++|+
T Consensus       106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~  130 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTK-LD--VSQNPLLT  130 (457)
T ss_dssp             TTCCEEECCSSCCSC-CC--CTTCTTCC
T ss_pred             CcCCEEECCCCcCCe-ec--CCCCCcCC
Confidence            999999999999955 55  67777665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.21  E-value=2.2e-11  Score=82.26  Aligned_cols=89  Identities=22%  Similarity=0.315  Sum_probs=60.4

Q ss_pred             CCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCC---
Q 035618           14 KSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKL---   90 (116)
Q Consensus        14 ~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l---   90 (116)
                      .+++|+.|++++|.+++ +|.   .+++|+.+++++|.+. .+|. +.  ++|+.|++++|.++ .+|. +..  +|   
T Consensus       138 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~-~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~  205 (571)
T 3cvr_A          138 LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT-FLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHS  205 (571)
T ss_dssp             CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC-CC--TTCCEEECCSSCCS-SCCC-CC--------
T ss_pred             cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC-Ccch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcc
Confidence            45667777777777643 444   4567777777777777 3666 44  77888888888776 5565 433  66   


Q ss_pred             ----CEEecccCccccccchHHhhhcCCC
Q 035618           91 ----HYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        91 ----~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                          +.|++++|.+ +.+|..+..+++|+
T Consensus       206 ~~~L~~L~Ls~N~l-~~lp~~l~~l~~L~  233 (571)
T 3cvr_A          206 EETEIFFRCRENRI-THIPENILSLDPTC  233 (571)
T ss_dssp             --CCEEEECCSSCC-CCCCGGGGGSCTTE
T ss_pred             cccceEEecCCCcc-eecCHHHhcCCCCC
Confidence                8888888888 56788777777664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.20  E-value=1.9e-12  Score=84.74  Aligned_cols=104  Identities=21%  Similarity=0.091  Sum_probs=51.2

Q ss_pred             ccCCcccceeeccccccccccchhhcC-----CCCCCeEecccCcceec----CchhhhccCCCCeEEeeceeeccCCcH
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIPNDLGK-----LNSLTKLILKWNQFTGR----LPPEISSFIKLEDIGLSINRFISSIPE   82 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~-----l~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~~~   82 (116)
                      +..+++|+.|++++|.+....+..+..     .++|+.+++++|.+.+.    ++..+..+++|+.+++++|.+....+.
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  359 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  359 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence            334455555555555543322222211     13555555555554432    233444556666666666655433233


Q ss_pred             HHhc-----ccCCCEEecccCcccc----ccchHHhhhcCCC
Q 035618           83 SLGK-----LLKLHYLDLSKNQFFQ----ELPKELEKVVQLS  115 (116)
Q Consensus        83 ~~~~-----~~~l~~l~l~~n~l~~----~~p~~~~~l~~L~  115 (116)
                      .+..     .++|+.+++++|.+++    .+|..+..+++|+
T Consensus       360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~  401 (461)
T 1z7x_W          360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  401 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence            2322     4466666666666643    5555555555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.19  E-value=9.1e-11  Score=79.99  Aligned_cols=89  Identities=24%  Similarity=0.256  Sum_probs=70.4

Q ss_pred             cccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEec
Q 035618           16 SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDL   95 (116)
Q Consensus        16 ~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l   95 (116)
                      ++|+.|++++|.+++ +|   ..+++|+.+++++|.+. .+|.   .+++|+.|++++|.+. .+|..+..+++|+.+++
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            567788888887743 55   34578888888888887 5666   5678889999999886 77888889999999999


Q ss_pred             ccCccccccchHHhhhcC
Q 035618           96 SKNQFFQELPKELEKVVQ  113 (116)
Q Consensus        96 ~~n~l~~~~p~~~~~l~~  113 (116)
                      ++|.+++..|..+..++.
T Consensus       292 ~~N~l~~~~~~~l~~L~~  309 (622)
T 3g06_A          292 EGNPLSERTLQALREITS  309 (622)
T ss_dssp             CSCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCcCHHHHHhccc
Confidence            999998888887776643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.17  E-value=2.9e-11  Score=77.10  Aligned_cols=97  Identities=19%  Similarity=0.250  Sum_probs=68.7

Q ss_pred             ccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch-hhhccCCCCe-EEeeceeeccCCcH
Q 035618            5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLED-IGLSINRFISSIPE   82 (116)
Q Consensus         5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~-l~l~~n~~~~~~~~   82 (116)
                      .+++|..+.  ++++.|++++|+++...+..|..+++|+++++++|.+.+.++. .|..++++.. +.+..|++....|.
T Consensus        21 Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~   98 (350)
T 4ay9_X           21 VTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE   98 (350)
T ss_dssp             CCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred             CCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence            345666553  5788888999888544344678888899999988887645554 4667777664 44556777655566


Q ss_pred             HHhcccCCCEEecccCccccc
Q 035618           83 SLGKLLKLHYLDLSKNQFFQE  103 (116)
Q Consensus        83 ~~~~~~~l~~l~l~~n~l~~~  103 (116)
                      .|..+++|+.+++++|.+...
T Consensus        99 ~f~~l~~L~~L~l~~n~l~~~  119 (350)
T 4ay9_X           99 AFQNLPNLQYLLISNTGIKHL  119 (350)
T ss_dssp             SBCCCTTCCEEEEEEECCSSC
T ss_pred             hhhhccccccccccccccccC
Confidence            778888888888888888443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.13  E-value=1.1e-10  Score=76.85  Aligned_cols=94  Identities=30%  Similarity=0.353  Sum_probs=47.0

Q ss_pred             cCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcc
Q 035618            8 IPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKL   87 (116)
Q Consensus         8 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~   87 (116)
                      +| .+..+++|+.|++++|.+.+ +|..   ..+|+.+++++|.+. .+| .+..+++|+.+++++|.+.+ +|..   .
T Consensus       146 lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~  214 (454)
T 1jl5_A          146 LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKK-LPDL---P  214 (454)
T ss_dssp             CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCCC---C
T ss_pred             Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCC-cCc-cccCCCCCCEEECCCCcCCc-CCCC---c
Confidence            44 35666666666666666532 3322   235556666666555 244 35555566666666555543 2221   1


Q ss_pred             cCCCEEecccCccccccchHHhhhcCC
Q 035618           88 LKLHYLDLSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        88 ~~l~~l~l~~n~l~~~~p~~~~~l~~L  114 (116)
                      .+|+.+++++|.+. .+|. ++.+++|
T Consensus       215 ~~L~~L~l~~n~l~-~lp~-~~~l~~L  239 (454)
T 1jl5_A          215 LSLESIVAGNNILE-ELPE-LQNLPFL  239 (454)
T ss_dssp             TTCCEEECCSSCCS-SCCC-CTTCTTC
T ss_pred             CcccEEECcCCcCC-cccc-cCCCCCC
Confidence            24455555555552 4442 4444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.12  E-value=7e-11  Score=77.83  Aligned_cols=88  Identities=24%  Similarity=0.427  Sum_probs=39.9

Q ss_pred             cccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeecc--CCcHHHhcc------
Q 035618           16 SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFIS--SIPESLGKL------   87 (116)
Q Consensus        16 ~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~--~~~~~~~~~------   87 (116)
                      ++|+.|++++|.+.+ +|..   +++|+.+++++|.+. .+|.   .+++|+.+++++|++.+  .+|..+..+      
T Consensus       317 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~  388 (454)
T 1jl5_A          317 PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHL  388 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--
T ss_pred             CcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccc
Confidence            356666666666533 3432   456777777777766 4555   35677777777777766  566666555      


Q ss_pred             -------cCCCEEecccCcccc--ccchHHhhh
Q 035618           88 -------LKLHYLDLSKNQFFQ--ELPKELEKV  111 (116)
Q Consensus        88 -------~~l~~l~l~~n~l~~--~~p~~~~~l  111 (116)
                             ++|+.+++++|.+++  .+|..+..+
T Consensus       389 ~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L  421 (454)
T 1jl5_A          389 AEVPELPQNLKQLHVETNPLREFPDIPESVEDL  421 (454)
T ss_dssp             ---------------------------------
T ss_pred             cccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence                   667777777777765  566655443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.06  E-value=5.3e-11  Score=77.96  Aligned_cols=108  Identities=16%  Similarity=0.076  Sum_probs=51.0

Q ss_pred             cCcCccCCcccceeeccccccccccchhhc-----CCCCCCeEecccCcceecC----chhhhccCCCCeEEeeceeecc
Q 035618            8 IPCEIGKSSHLHAFDLLFNHLFVEIPNDLG-----KLNSLTKLILKWNQFTGRL----PPEISSFIKLEDIGLSINRFIS   78 (116)
Q Consensus         8 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-----~l~~l~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~n~~~~   78 (116)
                      ++..+..+++|+.|++++|.++...+..+.     ..++|+.+++++|.+.+..    +..+..+++|+.+++++|.+..
T Consensus       105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  184 (461)
T 1z7x_W          105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE  184 (461)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence            344455556666666666655332222221     1234555555555554321    3334445566666666665433


Q ss_pred             CCcHHHh-----cccCCCEEecccCccccc----cchHHhhhcCCC
Q 035618           79 SIPESLG-----KLLKLHYLDLSKNQFFQE----LPKELEKVVQLS  115 (116)
Q Consensus        79 ~~~~~~~-----~~~~l~~l~l~~n~l~~~----~p~~~~~l~~L~  115 (116)
                      ..+..+.     ..++|+.+++++|.++..    ++..+..++.|+
T Consensus       185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  230 (461)
T 1z7x_W          185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR  230 (461)
T ss_dssp             HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence            2222221     133556666666655332    344444444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.05  E-value=6.7e-10  Score=75.78  Aligned_cols=67  Identities=30%  Similarity=0.382  Sum_probs=49.6

Q ss_pred             CCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           40 NSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        40 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      ++|+.+++++|.+. .+|   ..+++|+.|++++|.+. .+|.   .+++|+.|++++|.+ ..+|..+..+++|+
T Consensus       221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L-~~lp~~l~~l~~L~  287 (622)
T 3g06_A          221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQL-TRLPESLIHLSSET  287 (622)
T ss_dssp             TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC-CSCCGGGGGSCTTC
T ss_pred             CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCC-CcCCHHHhhccccC
Confidence            45666777777666 355   34567888888888775 4555   667899999999999 47888888888875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.98  E-value=1.3e-09  Score=69.54  Aligned_cols=78  Identities=14%  Similarity=0.048  Sum_probs=58.2

Q ss_pred             CccccccCcCccCCcccceeeccccccccccch-hhcCCCCCCe-EecccCcceecCchhhhccCCCCeEEeeceeeccC
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPN-DLGKLNSLTK-LILKWNQFTGRLPPEISSFIKLEDIGLSINRFISS   79 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~l~~l~~-l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~   79 (116)
                      |++....+..|.++++|+.|++++|.+.+.+|. .|..++++.. +.+..|.+....|..+..+++|+.+++++|++...
T Consensus        40 N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~  119 (350)
T 4ay9_X           40 TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL  119 (350)
T ss_dssp             CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred             CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccC
Confidence            555544445689999999999999998666654 4667777765 45566888855566788899999999999887543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.90  E-value=2.3e-09  Score=67.81  Aligned_cols=99  Identities=12%  Similarity=0.003  Sum_probs=80.8

Q ss_pred             CcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCC-eEEeeceeeccCCcHHHhcccCCCEE
Q 035618           15 SSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLE-DIGLSINRFISSIPESLGKLLKLHYL   93 (116)
Q Consensus        15 l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~-~l~l~~n~~~~~~~~~~~~~~~l~~l   93 (116)
                      +++|+.+++.+|.+....+..|..+.+|+.+++..| +...-+..|..|.+|+ .+.++. .+...-+..|.++.+|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            789999999999986655567888999999999998 6633345789999999 999988 4544445689999999999


Q ss_pred             ecccCccccccchHHhhhcCCC
Q 035618           94 DLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        94 ~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      ++.+|.+...-+.+|.++++|+
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~  324 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSK  324 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCC
T ss_pred             EeCCCccCccchhhhcCCcchh
Confidence            9999999666566898898886

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.82  E-value=3.1e-09  Score=65.63  Aligned_cols=77  Identities=23%  Similarity=0.215  Sum_probs=55.0

Q ss_pred             cCCCCCCeEecccCccee--cCchhhhccCCCCeEEeeceeeccCCcHHHhccc--CCCEEecccCccccccc-------
Q 035618           37 GKLNSLTKLILKWNQFTG--RLPPEISSFIKLEDIGLSINRFISSIPESLGKLL--KLHYLDLSKNQFFQELP-------  105 (116)
Q Consensus        37 ~~l~~l~~l~l~~~~~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~--~l~~l~l~~n~l~~~~p-------  105 (116)
                      ..+++|+.|++++|.+.+  .++..+..+++|+.|++++|.+.+.  ..+..+.  +|+.|++.+|.+.+.+|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            357788999999998875  3445667888899999999888653  2334444  88899999999876555       


Q ss_pred             hHHhhhcCCC
Q 035618          106 KELEKVVQLS  115 (116)
Q Consensus       106 ~~~~~l~~L~  115 (116)
                      ..+..+++|+
T Consensus       245 ~il~~~P~L~  254 (267)
T 3rw6_A          245 AIRERFPKLL  254 (267)
T ss_dssp             HHHHHCTTCC
T ss_pred             HHHHHCcccC
Confidence            2356666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.79  E-value=1.7e-09  Score=69.70  Aligned_cols=95  Identities=18%  Similarity=0.194  Sum_probs=51.2

Q ss_pred             Ccccceeeccccccccc----cchhhcCCCCCCeEecccCcceec----CchhhhccCCCCeEEeeceeeccC----CcH
Q 035618           15 SSHLHAFDLLFNHLFVE----IPNDLGKLNSLTKLILKWNQFTGR----LPPEISSFIKLEDIGLSINRFISS----IPE   82 (116)
Q Consensus        15 l~~L~~l~l~~n~~~~~----~~~~~~~l~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~----~~~   82 (116)
                      .+.|+.|++++|.++..    ++..+...++|+.+++++|.+...    ++..+..+++|+.|++++|.++..    +..
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~  233 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR  233 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence            34566666666665331    223334566666667666666531    133444556667777776665432    122


Q ss_pred             HHhcccCCCEEecccCccccccchHHh
Q 035618           83 SLGKLLKLHYLDLSKNQFFQELPKELE  109 (116)
Q Consensus        83 ~~~~~~~l~~l~l~~n~l~~~~p~~~~  109 (116)
                      .+...++|+.|++++|.++..-...+.
T Consensus       234 ~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          234 AAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             HHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             HHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence            334456677777777766444333333

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.77  E-value=1.3e-08  Score=62.81  Aligned_cols=79  Identities=24%  Similarity=0.290  Sum_probs=63.1

Q ss_pred             CCcccceeecccccccc--ccchhhcCCCCCCeEecccCcceecCchhhhccC--CCCeEEeeceeeccCCc-------H
Q 035618           14 KSSHLHAFDLLFNHLFV--EIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFI--KLEDIGLSINRFISSIP-------E   82 (116)
Q Consensus        14 ~l~~L~~l~l~~n~~~~--~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~--~L~~l~l~~n~~~~~~~-------~   82 (116)
                      .+++|+.|++++|.+.+  .++..+..+++|+.|++++|.+.+.  ..+..+.  .|+.|++.+|++.+.+|       .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            47899999999999976  4456677899999999999999843  3344444  89999999999887655       2


Q ss_pred             HHhcccCCCEEe
Q 035618           83 SLGKLLKLHYLD   94 (116)
Q Consensus        83 ~~~~~~~l~~l~   94 (116)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            467889998887

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.75  E-value=1.3e-09  Score=70.19  Aligned_cols=88  Identities=19%  Similarity=0.141  Sum_probs=55.8

Q ss_pred             Ccccceeeccccccccccchhh-----cCCCCCCeEecccCccee----cCchhhhccCCCCeEEeeceeeccC----Cc
Q 035618           15 SSHLHAFDLLFNHLFVEIPNDL-----GKLNSLTKLILKWNQFTG----RLPPEISSFIKLEDIGLSINRFISS----IP   81 (116)
Q Consensus        15 l~~L~~l~l~~n~~~~~~~~~~-----~~l~~l~~l~l~~~~~~~----~~~~~~~~~~~L~~l~l~~n~~~~~----~~   81 (116)
                      +++|+.|++++|.++......+     ...++|+.+++++|.+..    .++..+..++.|+.|++++|.+...    +.
T Consensus       125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~  204 (372)
T 3un9_A          125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA  204 (372)
T ss_dssp             HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred             HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence            4566777777777644333332     234678888888887753    2333446677788888888876532    23


Q ss_pred             HHHhcccCCCEEecccCcccc
Q 035618           82 ESLGKLLKLHYLDLSKNQFFQ  102 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~  102 (116)
                      ..+...++|+.|++++|.++.
T Consensus       205 ~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          205 AQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHGGGCSCCCEEECCSSCCCH
T ss_pred             HHHhcCCCcCeEECCCCCCCH
Confidence            345566788888888888844

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.71  E-value=2.8e-09  Score=71.80  Aligned_cols=76  Identities=13%  Similarity=0.180  Sum_probs=39.0

Q ss_pred             CCCCCeEecccCcceec----CchhhhccCCCCeEEeeceeec----cCCcHHHhcccCCCEEecccCccccccchHHhh
Q 035618           39 LNSLTKLILKWNQFTGR----LPPEISSFIKLEDIGLSINRFI----SSIPESLGKLLKLHYLDLSKNQFFQELPKELEK  110 (116)
Q Consensus        39 l~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~----~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~  110 (116)
                      +++|+.+++++|.+.+.    ++.....+++|+.|+++.|.+.    ..++..+..+++|+.|++++|.+ ..+|..+..
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~  241 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKA  241 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHH
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhh
Confidence            44555555555544332    1122334555555555555543    12223345566677777777666 335566666


Q ss_pred             hcCCC
Q 035618          111 VVQLS  115 (116)
Q Consensus       111 l~~L~  115 (116)
                      +++|+
T Consensus       242 ~~~L~  246 (592)
T 3ogk_B          242 AANLE  246 (592)
T ss_dssp             CTTCC
T ss_pred             hhHHH
Confidence            65554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.65  E-value=1.4e-08  Score=68.41  Aligned_cols=35  Identities=20%  Similarity=0.113  Sum_probs=17.7

Q ss_pred             cHHHhcccCCCEEecccCccccccc-hHHhhhcCCC
Q 035618           81 PESLGKLLKLHYLDLSKNQFFQELP-KELEKVVQLS  115 (116)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~p-~~~~~l~~L~  115 (116)
                      |..+..+++|+.|++++|.+.+... ..+..+++|+
T Consensus       286 ~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~  321 (592)
T 3ogk_B          286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE  321 (592)
T ss_dssp             GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred             HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence            3344555666666666666533322 2234444443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.54  E-value=7.3e-08  Score=56.40  Aligned_cols=91  Identities=14%  Similarity=0.087  Sum_probs=52.6

Q ss_pred             ccCCcccceeecccc-ccccc----cchhhcCCCCCCeEecccCcceec----CchhhhccCCCCeEEeeceeeccC---
Q 035618           12 IGKSSHLHAFDLLFN-HLFVE----IPNDLGKLNSLTKLILKWNQFTGR----LPPEISSFIKLEDIGLSINRFISS---   79 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n-~~~~~----~~~~~~~l~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~---   79 (116)
                      +...+.|+.|++++| .+...    +...+...++|+.+++++|.+...    +...+...+.|+.|++++|.+...   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            344566777777777 65332    233444556777777777776532    223344456677777777766432   


Q ss_pred             -CcHHHhcccCCCEEec--ccCcccc
Q 035618           80 -IPESLGKLLKLHYLDL--SKNQFFQ  102 (116)
Q Consensus        80 -~~~~~~~~~~l~~l~l--~~n~l~~  102 (116)
                       +...+...+.|+.|++  ++|.+..
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCH
Confidence             2233445566777777  6677633

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.53  E-value=1e-07  Score=55.44  Aligned_cols=96  Identities=15%  Similarity=0.071  Sum_probs=68.0

Q ss_pred             cCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCc-ceecCchhhhcc----CCCCeEEeecee-eccCCc
Q 035618            8 IPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQ-FTGRLPPEISSF----IKLEDIGLSINR-FISSIP   81 (116)
Q Consensus         8 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~-~~~~~~~~~~~~----~~L~~l~l~~n~-~~~~~~   81 (116)
                      +|.....-..|+.|+++++.++..--..+..+++|+.|++++|. ++...-..+..+    ++|+.|++++|. ++..--
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            34433333579999999999876655667889999999999995 553333345543    479999999975 443222


Q ss_pred             HHHhcccCCCEEecccCccccc
Q 035618           82 ESLGKLLKLHYLDLSKNQFFQE  103 (116)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~  103 (116)
                      ..+..+++|+.|+++++.-.+.
T Consensus       133 ~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          133 IALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHhcCCCCCEEECCCCCCCCc
Confidence            3467889999999999874343

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.52  E-value=5.4e-08  Score=65.53  Aligned_cols=36  Identities=11%  Similarity=0.048  Sum_probs=16.8

Q ss_pred             Ccccceeeccccccccccchhhc-CCCCCCeEecccC
Q 035618           15 SSHLHAFDLLFNHLFVEIPNDLG-KLNSLTKLILKWN   50 (116)
Q Consensus        15 l~~L~~l~l~~n~~~~~~~~~~~-~l~~l~~l~l~~~   50 (116)
                      +++|+.|++++|.++...+..+. .+++|+.+++.+|
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            44555555555554333333332 3445555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.45  E-value=4.7e-08  Score=65.81  Aligned_cols=88  Identities=14%  Similarity=0.041  Sum_probs=48.1

Q ss_pred             cCCcccceeeccccccccccchhhcC-CCCCCeEecccCcceecCchhh-hccCCCCeEEeeceeeccCCcH-HHhcccC
Q 035618           13 GKSSHLHAFDLLFNHLFVEIPNDLGK-LNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSIPE-SLGKLLK   89 (116)
Q Consensus        13 ~~l~~L~~l~l~~n~~~~~~~~~~~~-l~~l~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~n~~~~~~~~-~~~~~~~   89 (116)
                      ..+++|+.|++++ .++......+.. +++|+.+++++|.+.+.....+ ..+++|+.|++++|.++..... ....+++
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~  507 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET  507 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred             hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence            3445566666654 333333333333 5667777777666643333333 4566777777777766322222 2334667


Q ss_pred             CCEEecccCccc
Q 035618           90 LHYLDLSKNQFF  101 (116)
Q Consensus        90 l~~l~l~~n~l~  101 (116)
                      |+.|++++|.++
T Consensus       508 L~~L~l~~~~~~  519 (594)
T 2p1m_B          508 MRSLWMSSCSVS  519 (594)
T ss_dssp             SSEEEEESSCCB
T ss_pred             CCEEeeeCCCCC
Confidence            777777777663

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.44  E-value=4.9e-07  Score=57.11  Aligned_cols=91  Identities=14%  Similarity=-0.016  Sum_probs=72.0

Q ss_pred             ccccccCcCccCCcccceeeccccccccccchhhcCCCCCC-eEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            3 NSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLT-KLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         3 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~-~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      ++....+..|.++++|+.+++..| +...-+..|..+.+|+ .+++.. .+...-+..|..|.+|+.+++..|.+...-+
T Consensus       237 ~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          237 NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD  314 (329)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred             CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence            444445556889999999999998 6555566788899999 999988 6663345679999999999998888765555


Q ss_pred             HHHhcccCCCEEec
Q 035618           82 ESLGKLLKLHYLDL   95 (116)
Q Consensus        82 ~~~~~~~~l~~l~l   95 (116)
                      ..|.++++|+.++.
T Consensus       315 ~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          315 ELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTTCTTCCCCEEEC
T ss_pred             hhhcCCcchhhhcc
Confidence            68999999998863

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.38  E-value=2.4e-07  Score=54.22  Aligned_cols=91  Identities=16%  Similarity=0.129  Sum_probs=68.8

Q ss_pred             cCccCCcccceeeccccccccc----cchhhcCCCCCCeEecccCcceec----CchhhhccCCCCeEEe--eceeeccC
Q 035618           10 CEIGKSSHLHAFDLLFNHLFVE----IPNDLGKLNSLTKLILKWNQFTGR----LPPEISSFIKLEDIGL--SINRFISS   79 (116)
Q Consensus        10 ~~~~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l--~~n~~~~~   79 (116)
                      ..+...+.|+.|++++|.+...    +...+...++|+.+++++|.+...    +...+...+.|+.|++  .+|.+...
T Consensus        59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A           59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence            3455568899999999998543    334455568899999999998743    3455677889999999  88887543


Q ss_pred             ----CcHHHhcccCCCEEecccCcc
Q 035618           80 ----IPESLGKLLKLHYLDLSKNQF  100 (116)
Q Consensus        80 ----~~~~~~~~~~l~~l~l~~n~l  100 (116)
                          +...+...+.|+.+++++|.+
T Consensus       139 g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          139 VEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHHhCCCcCEEeccCCCC
Confidence                223455668999999999998

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.07  E-value=9.7e-06  Score=52.79  Aligned_cols=103  Identities=8%  Similarity=-0.073  Sum_probs=68.2

Q ss_pred             cccCcCccCCcccceeeccccccc-----cccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC
Q 035618            6 GDIPCEIGKSSHLHAFDLLFNHLF-----VEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI   80 (116)
Q Consensus         6 ~~~~~~~~~l~~L~~l~l~~n~~~-----~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~   80 (116)
                      ..-+..|..+++|+.+.+.++...     ..-+..|..+.+|+.+.+.. .+...-...|..|.+|+.+.++.+ +...-
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~  338 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN  338 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence            334556778888888888877653     23445677788888888874 455233446778888888888665 33223


Q ss_pred             cHHHhcccCCCEEecccCccccccchHHhhh
Q 035618           81 PESLGKLLKLHYLDLSKNQFFQELPKELEKV  111 (116)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l  111 (116)
                      ...|.++ +|+.+++.+|.+....+..|..+
T Consensus       339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~  368 (401)
T 4fdw_A          339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF  368 (401)
T ss_dssp             TTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred             HHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence            4567788 89999998887744333444444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.95  E-value=1.2e-05  Score=51.80  Aligned_cols=40  Identities=20%  Similarity=0.195  Sum_probs=21.8

Q ss_pred             cCCCCeEEeeceeeccCCcHHHh---cccCCCEEecccCcccc
Q 035618           63 FIKLEDIGLSINRFISSIPESLG---KLLKLHYLDLSKNQFFQ  102 (116)
Q Consensus        63 ~~~L~~l~l~~n~~~~~~~~~~~---~~~~l~~l~l~~n~l~~  102 (116)
                      +++|+.|++..|.+.......+.   .+++|++|+++.|.+..
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            45666666666654432222222   35566777777666644

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.85  E-value=1.1e-05  Score=46.93  Aligned_cols=76  Identities=11%  Similarity=0.007  Sum_probs=53.4

Q ss_pred             CCCCeEecccCcceecCchhhhccCCCCeEEeecee-eccCCcHHHhcc----cCCCEEecccCc-cccccchHHhhhcC
Q 035618           40 NSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR-FISSIPESLGKL----LKLHYLDLSKNQ-FFQELPKELEKVVQ  113 (116)
Q Consensus        40 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~----~~l~~l~l~~n~-l~~~~p~~~~~l~~  113 (116)
                      -.|+.++++++.++...-..+..+++|+.|++++|. ++..--..+..+    ++|+.|++++|. ++..--..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            368999999998875555567889999999999985 332111234443    479999999986 65544445666766


Q ss_pred             CC
Q 035618          114 LS  115 (116)
Q Consensus       114 L~  115 (116)
                      |+
T Consensus       141 L~  142 (176)
T 3e4g_A          141 LK  142 (176)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.85  E-value=5.3e-05  Score=49.34  Aligned_cols=106  Identities=13%  Similarity=0.034  Sum_probs=57.3

Q ss_pred             cCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeece-------------
Q 035618            8 IPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSIN-------------   74 (116)
Q Consensus         8 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n-------------   74 (116)
                      .+..|..+++|+.+++..|.+.. ++........|+.+.+..+ +..--...|..|.+|+.+.+..+             
T Consensus       172 ~~~aF~~c~~L~~l~l~~n~l~~-I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~  249 (401)
T 4fdw_A          172 KEDIFYYCYNLKKADLSKTKITK-LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESG  249 (401)
T ss_dssp             CSSTTTTCTTCCEEECTTSCCSE-ECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCC
T ss_pred             hHHHhhCcccCCeeecCCCcceE-echhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCC
Confidence            34557778888888888776633 3333333456666665533 33122234555555555555432             


Q ss_pred             --------eeccCCcHHHhcccCCCEEecccCccc-----cccchHHhhhcCCC
Q 035618           75 --------RFISSIPESLGKLLKLHYLDLSKNQFF-----QELPKELEKVVQLS  115 (116)
Q Consensus        75 --------~~~~~~~~~~~~~~~l~~l~l~~n~l~-----~~~p~~~~~l~~L~  115 (116)
                              .+...-...|.++.+|+.+.+.+|.+.     ..-+.+|..+++|+
T Consensus       250 L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~  303 (401)
T 4fdw_A          250 ITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLA  303 (401)
T ss_dssp             CSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCC
T ss_pred             ccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCC
Confidence                    111111345667777888877776652     23334566666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.73  E-value=2.7e-05  Score=50.13  Aligned_cols=96  Identities=15%  Similarity=0.178  Sum_probs=60.0

Q ss_pred             CCcccceeecccc--cccc-----ccchhh--cCCCCCCeEecccCcceecCchhhh---ccCCCCeEEeeceeeccC--
Q 035618           14 KSSHLHAFDLLFN--HLFV-----EIPNDL--GKLNSLTKLILKWNQFTGRLPPEIS---SFIKLEDIGLSINRFISS--   79 (116)
Q Consensus        14 ~l~~L~~l~l~~n--~~~~-----~~~~~~--~~l~~l~~l~l~~~~~~~~~~~~~~---~~~~L~~l~l~~n~~~~~--   79 (116)
                      .+++|+.|+++.+  ...+     .+...+  ..+++|+.|++.+|.+....+..+.   .+++|+.|+++.|.+...  
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~  296 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA  296 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence            5677777777531  1111     111122  2367888998888877643333332   478999999999887543  


Q ss_pred             --CcHHHhcccCCCEEecccCccccccchHHh
Q 035618           80 --IPESLGKLLKLHYLDLSKNQFFQELPKELE  109 (116)
Q Consensus        80 --~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~  109 (116)
                        ++..+..+++|+.|++++|.++...-..+.
T Consensus       297 ~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~  328 (362)
T 2ra8_A          297 RLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ  328 (362)
T ss_dssp             HHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred             HHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence              222345678999999999998554433333

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.42  E-value=0.00083  Score=43.07  Aligned_cols=35  Identities=20%  Similarity=0.292  Sum_probs=14.2

Q ss_pred             CCCCCCeEecccCcceecCchhhhccCCCCeEEee
Q 035618           38 KLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLS   72 (116)
Q Consensus        38 ~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   72 (116)
                      .+.+|+.+.+..+.+..--...|..|.+|+.+.++
T Consensus       284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             cccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            34444444444443331112234444444444444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.36  E-value=0.0012  Score=42.61  Aligned_cols=63  Identities=14%  Similarity=0.129  Sum_probs=30.2

Q ss_pred             hhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccCc
Q 035618           35 DLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQ   99 (116)
Q Consensus        35 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~   99 (116)
                      .|..+.+|+.+.+..+ ++.--...|..|.+|+.+.++.+ ++..-..+|.++.+|+.+++.++.
T Consensus       306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            3444555555555432 22111234555666666666543 221122345666666666665543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.02  E-value=0.0011  Score=42.90  Aligned_cols=98  Identities=13%  Similarity=0.150  Sum_probs=56.8

Q ss_pred             ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH   91 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~   91 (116)
                      +..+.+|+.+.+..+ +...-...|..+.+|+.+++..+ +..--..+|..|.+|+.+.++.+ +...-..+|.++.+|+
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence            445666666666544 32333345666777777777543 44122346777788888877765 3322234677788888


Q ss_pred             EEecccCccccccchHHhhhcCC
Q 035618           92 YLDLSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        92 ~l~l~~n~l~~~~p~~~~~l~~L  114 (116)
                      .+++..+ + ..+...|..++.|
T Consensus       370 ~i~lp~~-~-~~~~~~F~~c~~L  390 (394)
T 4fs7_A          370 KVELPKR-L-EQYRYDFEDTTKF  390 (394)
T ss_dssp             EEEEEGG-G-GGGGGGBCTTCEE
T ss_pred             EEEECCC-C-EEhhheecCCCCC
Confidence            8877643 2 2333455555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.98  E-value=0.0061  Score=39.37  Aligned_cols=102  Identities=10%  Similarity=0.134  Sum_probs=70.2

Q ss_pred             CcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCc-hhhhccCCCCeEEeeceeeccCCcHHHhcc
Q 035618            9 PCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLP-PEISSFIKLEDIGLSINRFISSIPESLGKL   87 (116)
Q Consensus         9 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~   87 (116)
                      ...|..+..|+.+.+..+.. ..-...|..+..|+.+.+.. .+. .++ ..|..|.+|+.+.++.+ ++..-..+|.++
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C  333 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC  333 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             cceeeecccccEEecccccc-eecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence            44577788888888866543 33445677788899888864 444 344 46888999999999765 322223568899


Q ss_pred             cCCCEEecccCccccccchHHhhhcCCC
Q 035618           88 LKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        88 ~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      .+|+.+.+..+ +...-..+|.++++|+
T Consensus       334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~  360 (394)
T 4gt6_A          334 EQLERIAIPSS-VTKIPESAFSNCTALN  360 (394)
T ss_dssp             TTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred             CCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence            99999998654 5344456788888775

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.97  E-value=0.0018  Score=35.66  Aligned_cols=35  Identities=31%  Similarity=0.483  Sum_probs=16.9

Q ss_pred             CCCeEecccCcceecCch-hhhccCCCCeEEeeceee
Q 035618           41 SLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSINRF   76 (116)
Q Consensus        41 ~l~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~   76 (116)
                      +++.|++++|.+. .++. .|..+++|+.+++.+|.+
T Consensus        32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence            3455555555555 3333 344455555555555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.95  E-value=0.003  Score=40.48  Aligned_cols=104  Identities=13%  Similarity=-0.027  Sum_probs=67.8

Q ss_pred             CcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhccc
Q 035618            9 PCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLL   88 (116)
Q Consensus         9 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~   88 (116)
                      ...+..+..|+.+.+..+ +...-...+..+..++.+.+..+ +...-...|..|.+|+.+.+..+.+...-...|.++.
T Consensus       233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~  310 (379)
T 4h09_A          233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV  310 (379)
T ss_dssp             TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred             cccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence            344667778888887665 33333455667788888877654 3312234677888999998887655433345688888


Q ss_pred             CCCEEecccCccccccchHHhhhcCCC
Q 035618           89 KLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        89 ~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      +|+.+.+..+ +...-..+|.++.+|+
T Consensus       311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~  336 (379)
T 4h09_A          311 KLSSVTLPTA-LKTIQVYAFKNCKALS  336 (379)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             CCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence            8999988654 4233345677777665

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.94  E-value=0.0011  Score=39.26  Aligned_cols=85  Identities=11%  Similarity=0.049  Sum_probs=51.6

Q ss_pred             CCcccceeecccc-ccccc----cchhhcCCCCCCeEecccCcceec----CchhhhccCCCCeEEeeceeeccCCc---
Q 035618           14 KSSHLHAFDLLFN-HLFVE----IPNDLGKLNSLTKLILKWNQFTGR----LPPEISSFIKLEDIGLSINRFISSIP---   81 (116)
Q Consensus        14 ~l~~L~~l~l~~n-~~~~~----~~~~~~~l~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~~---   81 (116)
                      .-+.|+.|+++++ .+...    +...+..=.+|+.|++++|.+...    +.+.+...+.|+.|+++.|.+...--   
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3456788888775 55321    333445556788888888877632    23345566778888888887653211   


Q ss_pred             -HHHhcccCCCEEecccC
Q 035618           82 -ESLGKLLKLHYLDLSKN   98 (116)
Q Consensus        82 -~~~~~~~~l~~l~l~~n   98 (116)
                       +.+..-..|+.|++++|
T Consensus       119 a~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHTTTTCCCSEEECCCC
T ss_pred             HHHHhhCCceeEEECCCC
Confidence             22334456788888654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.91  E-value=0.0018  Score=35.57  Aligned_cols=45  Identities=22%  Similarity=0.183  Sum_probs=34.8

Q ss_pred             ccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcce
Q 035618            7 DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFT   53 (116)
Q Consensus         7 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~   53 (116)
                      .+|..+.  .+++.|++++|.++..-+..|..+++|+.+++.+|.+.
T Consensus        24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5665443  46899999999996655566778999999999998764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.61  E-value=0.0073  Score=39.00  Aligned_cols=78  Identities=14%  Similarity=0.020  Sum_probs=50.4

Q ss_pred             hhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccCccccccchHHhhhcCC
Q 035618           35 DLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        35 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L  114 (116)
                      .+..+.+|+.+.+..+ ++.--...|..|.+|+.++++.+ +...-..+|.++.+|+.+.+..+ +...-..+|..+.+|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            3445667777766554 43122346778888998888754 33222356888899999988766 534444567777777


Q ss_pred             C
Q 035618          115 S  115 (116)
Q Consensus       115 ~  115 (116)
                      +
T Consensus       369 ~  369 (394)
T 4fs7_A          369 K  369 (394)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.85  E-value=0.0087  Score=35.37  Aligned_cols=90  Identities=13%  Similarity=0.046  Sum_probs=62.1

Q ss_pred             CccCCcccceeeccccccccc----cchhhcCCCCCCeEecccCcceec----CchhhhccCCCCeEEeece---eeccC
Q 035618           11 EIGKSSHLHAFDLLFNHLFVE----IPNDLGKLNSLTKLILKWNQFTGR----LPPEISSFIKLEDIGLSIN---RFISS   79 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n---~~~~~   79 (116)
                      .+..-+.|+.|++++|.+...    +...+..=..|+.|+++.|.+...    +.+.+.....|+.|+++++   .+...
T Consensus        65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~  144 (197)
T 1pgv_A           65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  144 (197)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence            345567899999999998543    223344457899999999999743    2334556678999999854   32211


Q ss_pred             ----CcHHHhcccCCCEEecccCcc
Q 035618           80 ----IPESLGKLLKLHYLDLSKNQF  100 (116)
Q Consensus        80 ----~~~~~~~~~~l~~l~l~~n~l  100 (116)
                          +-+.+..-+.|+.+++..|.+
T Consensus       145 g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          145 VEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHhCCCcCeEeccCCCc
Confidence                223455567899999988876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	116
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 48.2 bits (113), Expect = 2e-08
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 47  LKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELP 105
           L+ N+  G LP  ++    L  + +S N     IP+  G L +      + N+     P
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.8 bits (112), Expect = 4e-08
 Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 16  SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR 75
            +L+  DL  N ++  +P  L +L  L  L + +N   G + P+  +  + +    + N+
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNK 302

Query: 76  FISSIP 81
            +   P
Sbjct: 303 CLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.0 bits (97), Expect = 3e-06
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLP 57
           N   G +P  + +   LH+ ++ FN+L  EIP   G L          N+     P
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 3e-07
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 6/82 (7%)

Query: 17  HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRF 76
           +L    L FN++    P  +  L  L +L    N+ +      +++   +  +    N+ 
Sbjct: 308 NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQI 363

Query: 77  ISSIPESLGKLLKLHYLDLSKN 98
               P  L  L ++  L L+  
Sbjct: 364 SDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 7e-05
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 39  LNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKN 98
           L +LT L L +N  +      +SS  KL+ +  + N+   S   SL  L  +++L    N
Sbjct: 306 LKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHN 361

Query: 99  QFFQELP 105
           Q     P
Sbjct: 362 QISDLTP 368

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 9e-06
 Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 9/98 (9%)

Query: 17  HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRF 76
            L       N    EI +      SL +L +  N+    LP        LE +  S N  
Sbjct: 261 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNH- 315

Query: 77  ISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114
           ++ +PE       L  L +  N   +E P   E V  L
Sbjct: 316 LAEVPELPQ---NLKQLHVEYNP-LREFPDIPESVEDL 349

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 9e-06
 Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 40  NSLTKLILKWNQFTGRLPPEISSFIK----LEDIGLSINRFISSIPESLGKLLK-----L 90
           + L  L L     +      +++ +     L ++ LS N    +    L + ++     L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 91  HYLDLSKNQFFQELPKELEKVVQ 113
             L L    + +E+   L+ + +
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 3e-04
 Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 10/98 (10%)

Query: 15  SSHLHAFDLLFNHL-FVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIK----LEDI 69
           S  + + D+    L        L  L     + L     T     +ISS ++    L ++
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 70  GLSINRFISSIPESLGKLL-----KLHYLDLSKNQFFQ 102
            L  N         + + L     K+  L L       
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 3e-04
 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 9/85 (10%)

Query: 16  SHLHAFDLLFNHL----FVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIK-----L 66
           S L    L    +       +   L   +SL +L L  N        ++   ++     L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 67  EDIGLSINRFISSIPESLGKLLKLH 91
           E + L    +   + + L  L K  
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 7e-04
 Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 5/73 (6%)

Query: 41  SLTKLILKWNQFTGRLPPEISSFIK-LEDIGLSINRF----ISSIPESLGKLLKLHYLDL 95
            +  L ++  + +     E+   ++  + + L            I  +L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 96  SKNQFFQELPKEL 108
             N+        +
Sbjct: 63  RSNELGDVGVHCV 75

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 1e-05
 Identities = 22/100 (22%), Positives = 34/100 (34%)

Query: 1   MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
            N              +L    L  N +          L+SL +L+L  N+     P   
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 61  SSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100
               +L  + L  N   +   E+L  L  L YL L+ N +
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 3e-04
 Identities = 20/86 (23%), Positives = 28/86 (32%)

Query: 17  HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRF 76
            L    L  N L     +    L +LT L L  N+ +            L+ + L  NR 
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 77  ISSIPESLGKLLKLHYLDLSKNQFFQ 102
               P +   L +L  L L  N    
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSA 215

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 4e-04
 Identities = 22/100 (22%), Positives = 31/100 (31%), Gaps = 1/100 (1%)

Query: 1   MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
            N  T      +     L    L  N L    P  L     L KL L  N  T      +
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168

Query: 61  SSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100
           +    L+ + L  N   + IP+       L +  L  N +
Sbjct: 169 NGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (76), Expect = 0.002
 Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 1/77 (1%)

Query: 1   MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
            N      P  +  +  L    L  N+L       L  L +L  L+L+ N     +P   
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191

Query: 61  SSFIKLEDIGLSINRFI 77
                L    L  N ++
Sbjct: 192 FGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (74), Expect = 0.004
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 35  DLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLD 94
           ++ K+ S  ++       T  LPP++     +    LS N   +    +L    +L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKDTTILH--LSENLLYTFSLATLMPYTRLTQLN 61

Query: 95  LSKNQFFQ 102
           L + +  +
Sbjct: 62  LDRAELTK 69

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 33.9 bits (76), Expect = 0.002
 Identities = 17/90 (18%), Positives = 30/90 (33%)

Query: 2   NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
           N  T     +     +LH   L+ N +    P     L  L +L L  NQ          
Sbjct: 41  NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK 100

Query: 62  SFIKLEDIGLSINRFISSIPESLGKLLKLH 91
           +  +L      I +   S+   L +++ + 
Sbjct: 101 TLQELRVHENEITKVRKSVFNGLNQMIVVE 130

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	116
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.64
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.62
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.61
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.58
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.53
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.53
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.5
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.45
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.42
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.38
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.32
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.24
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.24
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.2
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.2
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.19
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.17
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.1
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.98
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.95
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.89
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.63
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.51
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.48
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.46
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.4
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.31
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.26
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.25
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.2
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.07
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.85
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.43
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.92
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.22

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.74  E-value=6.5e-18  Score=104.66  Aligned_cols=113  Identities=22%  Similarity=0.321  Sum_probs=99.1

Q ss_pred             Ccccc--ccCcCccCCcccceeeccc-cccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeecc
Q 035618            2 NNSTG--DIPCEIGKSSHLHAFDLLF-NHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFIS   78 (116)
Q Consensus         2 n~~~~--~~~~~~~~l~~L~~l~l~~-n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~   78 (116)
                      |.+.+  .+|..+..+++|++|++++ |.+++.+|+.+.++++|+++++++|++.+..+..+..+..|+.++++.|.+.+
T Consensus        60 ~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~  139 (313)
T d1ogqa_          60 LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG  139 (313)
T ss_dssp             CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             CCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccc
Confidence            44454  5788999999999999986 78888899999999999999999999998778888889999999999999888


Q ss_pred             CCcHHHhcccCCCEEecccCccccccchHHhhhcCC
Q 035618           79 SIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        79 ~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L  114 (116)
                      .+|..+..++.++.+++++|.+.+.+|+.++.+..+
T Consensus       140 ~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l  175 (313)
T d1ogqa_         140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL  175 (313)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred             cCchhhccCcccceeecccccccccccccccccccc
Confidence            889999999999999999999988999888877664

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=2.9e-17  Score=95.58  Aligned_cols=108  Identities=28%  Similarity=0.295  Sum_probs=73.8

Q ss_pred             cccCcCccCCcccceeecccccccccc-chhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHH
Q 035618            6 GDIPCEIGKSSHLHAFDLLFNHLFVEI-PNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESL   84 (116)
Q Consensus         6 ~~~~~~~~~l~~L~~l~l~~n~~~~~~-~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~   84 (116)
                      ..+|..+.  +.+++|++++|.++... +..|..+++|+.+++++|.+....+..+..++.|+.+++++|++....+..|
T Consensus        21 ~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F   98 (192)
T d1w8aa_          21 KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF   98 (192)
T ss_dssp             SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSS
T ss_pred             CccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHH
Confidence            35565553  56777777777775433 4455667777777777777775555667777777777777777765555667


Q ss_pred             hcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           85 GKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        85 ~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      .++++|+.|++++|.+++..|++|..+++|+
T Consensus        99 ~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~  129 (192)
T d1w8aa_          99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             hCCCcccccccCCccccccCHHHhcCCcccc
Confidence            7777777777777777555556666666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=2.5e-15  Score=81.78  Aligned_cols=109  Identities=23%  Similarity=0.279  Sum_probs=86.0

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC-
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI-   80 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-   80 (116)
                      |++. .++ .+..+++|++|++++|.+ ..+|+.+..+++|+.+++++|.+. .++ .+..+++|+.+++++|++...- 
T Consensus         8 n~l~-~l~-~l~~l~~L~~L~ls~N~l-~~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i~~~~~   82 (124)
T d1dcea3           8 KDLT-VLC-HLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAA   82 (124)
T ss_dssp             SCCS-SCC-CGGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSSST
T ss_pred             CCCC-CCc-ccccCCCCCEEECCCCcc-Ccchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCccCCCCC
Confidence            4544 444 488999999999999999 567888999999999999999998 555 5889999999999999986432 


Q ss_pred             cHHHhcccCCCEEecccCccccc--cc-hHHhhhcCCC
Q 035618           81 PESLGKLLKLHYLDLSKNQFFQE--LP-KELEKVVQLS  115 (116)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~--~p-~~~~~l~~L~  115 (116)
                      ...+..+++|+.+++++|++...  .+ ..+..+++|+
T Consensus        83 ~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~  120 (124)
T d1dcea3          83 IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS  120 (124)
T ss_dssp             TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred             chhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcc
Confidence            24678899999999999999532  12 2344556554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.62  E-value=1.2e-15  Score=94.34  Aligned_cols=111  Identities=32%  Similarity=0.525  Sum_probs=100.2

Q ss_pred             CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618            2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP   81 (116)
Q Consensus         2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~   81 (116)
                      |++.|.+|..+.++++|++|++++|.+.+..+..+..+.+|+.+++..|...+.+|..+..++.++.+++++|.+.+.+|
T Consensus        87 N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip  166 (313)
T d1ogqa_          87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP  166 (313)
T ss_dssp             TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred             cccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccc
Confidence            67888999999999999999999999988888888899999999999999988899999999999999999999988899


Q ss_pred             HHHhcccCC-CEEecccCccccccchHHhhhc
Q 035618           82 ESLGKLLKL-HYLDLSKNQFFQELPKELEKVV  112 (116)
Q Consensus        82 ~~~~~~~~l-~~l~l~~n~l~~~~p~~~~~l~  112 (116)
                      ..+..+..+ +.+++++|.+++..|..+..+.
T Consensus       167 ~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~  198 (313)
T d1ogqa_         167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN  198 (313)
T ss_dssp             GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred             cccccccccccccccccccccccccccccccc
Confidence            888887765 8899999999888888776654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=1.4e-15  Score=88.36  Aligned_cols=104  Identities=22%  Similarity=0.195  Sum_probs=89.5

Q ss_pred             CCcccccc-CcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccC
Q 035618            1 MNNSTGDI-PCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISS   79 (116)
Q Consensus         1 ~n~~~~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~   79 (116)
                      +|.+...+ +..|..+++|+.|++++|.+....+..+..+++|+.+++++|++.+..++.|..+++|+.|++++|++++.
T Consensus        38 ~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i  117 (192)
T d1w8aa_          38 DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV  117 (192)
T ss_dssp             SCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCcccccc
Confidence            36665544 45678899999999999999888888898999999999999999965566789999999999999999877


Q ss_pred             CcHHHhcccCCCEEecccCcccccc
Q 035618           80 IPESLGKLLKLHYLDLSKNQFFQEL  104 (116)
Q Consensus        80 ~~~~~~~~~~l~~l~l~~n~l~~~~  104 (116)
                      .++.|..+++|+++++++|.+....
T Consensus       118 ~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_         118 MPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CHHHhcCCccccccccccccccccc
Confidence            6778999999999999999985543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.2e-15  Score=90.08  Aligned_cols=100  Identities=22%  Similarity=0.187  Sum_probs=44.9

Q ss_pred             CcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEe
Q 035618           15 SSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLD   94 (116)
Q Consensus        15 l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~   94 (116)
                      ..+|+.+++++|.+++..+..+..+++++.+++++|.+.+..+..+..+++|+.++++.|++.+..|..|..++++++++
T Consensus       128 ~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~  207 (284)
T d1ozna_         128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (284)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             hcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccc
Confidence            33344444444444222223333444444444444444432233444444555555555544444444445555555555


Q ss_pred             cccCccccccchHHhhhcCC
Q 035618           95 LSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        95 l~~n~l~~~~p~~~~~l~~L  114 (116)
                      +++|.+.+..|..|..+++|
T Consensus       208 l~~N~i~~~~~~~~~~~~~L  227 (284)
T d1ozna_         208 LFANNLSALPTEALAPLRAL  227 (284)
T ss_dssp             CCSSCCSCCCHHHHTTCTTC
T ss_pred             cccccccccccccccccccc
Confidence            55555544444444444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=2.1e-14  Score=78.07  Aligned_cols=91  Identities=25%  Similarity=0.320  Sum_probs=76.8

Q ss_pred             ceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccC
Q 035618           19 HAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKN   98 (116)
Q Consensus        19 ~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n   98 (116)
                      ++|++++|.++ .++ .+..+.+|+++++++|.++ .+|+.+..+++|+.+++++|.+.. +| .+..+++|+.+++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            57899999995 444 4888999999999999998 788889999999999999999864 44 5889999999999999


Q ss_pred             ccccccc--hHHhhhcCCC
Q 035618           99 QFFQELP--KELEKVVQLS  115 (116)
Q Consensus        99 ~l~~~~p--~~~~~l~~L~  115 (116)
                      .+ ..+|  ..++.++.|+
T Consensus        76 ~i-~~~~~~~~l~~~~~L~   93 (124)
T d1dcea3          76 RL-QQSAAIQPLVSCPRLV   93 (124)
T ss_dssp             CC-CSSSTTGGGGGCTTCC
T ss_pred             cc-CCCCCchhhcCCCCCC
Confidence            99 4444  4577777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=7.7e-15  Score=83.21  Aligned_cols=106  Identities=19%  Similarity=0.187  Sum_probs=78.0

Q ss_pred             cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc--HH
Q 035618            6 GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP--ES   83 (116)
Q Consensus         6 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~--~~   83 (116)
                      ..++..+..+++|+.|++++|.+. .++ .+..+++|+.+++++|.+....+..+..+++|+.+++++|.+.. ++  ..
T Consensus        31 ~~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~-~~~l~~  107 (162)
T d1a9na_          31 PVIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDP  107 (162)
T ss_dssp             CSCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGG
T ss_pred             CccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceeccccccc-cccccc
Confidence            344555567888999999999884 343 47788899999999998884333345678889999999988753 33  35


Q ss_pred             HhcccCCCEEecccCccccccch----HHhhhcCCC
Q 035618           84 LGKLLKLHYLDLSKNQFFQELPK----ELEKVVQLS  115 (116)
Q Consensus        84 ~~~~~~l~~l~l~~n~l~~~~p~----~~~~l~~L~  115 (116)
                      +..+++|+.+++++|.+ ...|.    .+..+++|+
T Consensus       108 l~~l~~L~~L~l~~N~i-~~~~~~r~~~i~~lp~L~  142 (162)
T d1a9na_         108 LASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVR  142 (162)
T ss_dssp             GGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCS
T ss_pred             cccccccchhhcCCCcc-ccccchHHHHHHHCCCcC
Confidence            67888999999999988 44443    467777765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.8e-14  Score=88.01  Aligned_cols=112  Identities=21%  Similarity=0.128  Sum_probs=94.7

Q ss_pred             cccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHH
Q 035618            4 STGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPES   83 (116)
Q Consensus         4 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~   83 (116)
                      +....+..+.++++|+.|++++|.+....+..+..+..|+.+++.+|.+++..+..+..+..|+.+++.+|.+.+..+..
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence            34445667889999999999999986666667778899999999999998433456888899999999999987766778


Q ss_pred             HhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           84 LGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        84 ~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      |..+++|+.+++++|.+++..|..|..+++|+
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~  204 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM  204 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             hccccccchhhhhhccccccChhHhhhhhhcc
Confidence            89999999999999999888899999888775

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.8e-14  Score=80.31  Aligned_cols=100  Identities=19%  Similarity=0.139  Sum_probs=81.5

Q ss_pred             ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH   91 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~   91 (116)
                      +.+...++.|++++|++ ..++..+..+++|+.+++++|.+. .+ +.+..+++|+.+++++|++....+..+..+++++
T Consensus        14 ~~n~~~lr~L~L~~n~I-~~i~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCC-CSCCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCC-CccCccccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            56777899999999999 555666677899999999999998 45 3577899999999999998755455567899999


Q ss_pred             EEecccCccccccch--HHhhhcCCC
Q 035618           92 YLDLSKNQFFQELPK--ELEKVVQLS  115 (116)
Q Consensus        92 ~l~l~~n~l~~~~p~--~~~~l~~L~  115 (116)
                      .+++++|.+ ..+++  .+..+++|+
T Consensus        91 ~L~L~~N~i-~~~~~l~~l~~l~~L~  115 (162)
T d1a9na_          91 ELILTNNSL-VELGDLDPLASLKSLT  115 (162)
T ss_dssp             EEECCSCCC-CCGGGGGGGGGCTTCC
T ss_pred             cceeccccc-cccccccccccccccc
Confidence            999999999 55543  567777775

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.8e-14  Score=84.51  Aligned_cols=106  Identities=26%  Similarity=0.240  Sum_probs=67.6

Q ss_pred             CcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhccc
Q 035618            9 PCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLL   88 (116)
Q Consensus         9 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~   88 (116)
                      +..+..+++|+.++++++.+....+..+..+.+++.+++.+|.+...-+..+..++.++.+++++|++++..++.+..++
T Consensus        93 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~  172 (266)
T d1p9ag_          93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE  172 (266)
T ss_dssp             CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred             ccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCcccccccc
Confidence            33444455555555555554443344444555566666666666522233456677788888888888766666678888


Q ss_pred             CCCEEecccCccccccchHHhhhcCCC
Q 035618           89 KLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        89 ~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      +|+.|++++|.+ ..+|+.+..+++|+
T Consensus       173 ~L~~L~Ls~N~L-~~lp~~~~~~~~L~  198 (266)
T d1p9ag_         173 NLDTLLLQENSL-YTIPKGFFGSHLLP  198 (266)
T ss_dssp             TCCEEECCSSCC-CCCCTTTTTTCCCS
T ss_pred             ccceeecccCCC-cccChhHCCCCCCC
Confidence            888888888888 47777777676664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4e-13  Score=75.60  Aligned_cols=96  Identities=22%  Similarity=0.136  Sum_probs=78.5

Q ss_pred             ccccCcCccCCcccceeecccc-ccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHH
Q 035618            5 TGDIPCEIGKSSHLHAFDLLFN-HLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPES   83 (116)
Q Consensus         5 ~~~~~~~~~~l~~L~~l~l~~n-~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~   83 (116)
                      ....|..+..+++++.|+++++ .+....+..|..+++|+.+++++|++...-+..|..+++|+.+++++|++. .+|..
T Consensus        20 ~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~   98 (156)
T d2ifga3          20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWK   98 (156)
T ss_dssp             CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCST
T ss_pred             CccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChh
Confidence            4456788889999999999876 475555667889999999999999999655678999999999999999987 45554


Q ss_pred             HhcccCCCEEecccCccc
Q 035618           84 LGKLLKLHYLDLSKNQFF  101 (116)
Q Consensus        84 ~~~~~~l~~l~l~~n~l~  101 (116)
                      ......++.+++++|.+.
T Consensus        99 ~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          99 TVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             TTCSCCCCEEECCSSCCC
T ss_pred             hhccccccccccCCCccc
Confidence            444457999999999873

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2e-13  Score=82.72  Aligned_cols=58  Identities=24%  Similarity=0.216  Sum_probs=24.5

Q ss_pred             ccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceee
Q 035618           17 HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRF   76 (116)
Q Consensus        17 ~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~   76 (116)
                      .++.|++++|.+++..+..|..+++|+.+++++|.+. .++. +..+++|+.|++++|++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls~N~l   89 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQL   89 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCC
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-ccccccccccccccccc
Confidence            3444555555443322233444444444444444443 2221 22334444444444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.38  E-value=2.4e-14  Score=83.55  Aligned_cols=102  Identities=21%  Similarity=0.270  Sum_probs=65.5

Q ss_pred             cCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcc
Q 035618            8 IPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKL   87 (116)
Q Consensus         8 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~   87 (116)
                      +|..+..+++|+.|++++|.+. .++ .+..+++|+.+++++|.+. .++.....++.|+.+++.+|.+.. + +.+..+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l  114 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccc
Confidence            3445667778888888888874 444 4667778888888888776 566554455567777777776642 2 345666


Q ss_pred             cCCCEEecccCccccccc--hHHhhhcCCC
Q 035618           88 LKLHYLDLSKNQFFQELP--KELEKVVQLS  115 (116)
Q Consensus        88 ~~l~~l~l~~n~l~~~~p--~~~~~l~~L~  115 (116)
                      ++|+.+++++|.+ +.++  ..+..++.|+
T Consensus       115 ~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~  143 (198)
T d1m9la_         115 VNLRVLYMSNNKI-TNWGEIDKLAALDKLE  143 (198)
T ss_dssp             HHSSEEEESEEEC-CCHHHHHHHTTTTTCS
T ss_pred             ccccccccccchh-ccccccccccCCCccc
Confidence            6777777777776 3333  2355555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.32  E-value=4.5e-12  Score=77.80  Aligned_cols=70  Identities=17%  Similarity=0.191  Sum_probs=36.1

Q ss_pred             ccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeec
Q 035618            7 DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFI   77 (116)
Q Consensus         7 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~   77 (116)
                      ..+..+..++.++.|++++|.+.+..+..+..+++|+.+++++|.++ .+|.++..+++|+.|++++|+++
T Consensus       186 ~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             CChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            33444445555555555555554444444445555555555555555 44555555555555555555543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.31  E-value=4.7e-12  Score=77.71  Aligned_cols=89  Identities=20%  Similarity=0.261  Sum_probs=69.4

Q ss_pred             CcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEe
Q 035618           15 SSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLD   94 (116)
Q Consensus        15 l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~   94 (116)
                      +++++.|++++|......+..+..++.++.+++++|.+.+..+..+..+++|+.|++++|+++ .+|+.+..+++|+.|+
T Consensus       170 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~  248 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY  248 (305)
T ss_dssp             CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred             CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEE
Confidence            467777788887776667777778888888888888888655667778888888888888875 5677788888888888


Q ss_pred             cccCccccccc
Q 035618           95 LSKNQFFQELP  105 (116)
Q Consensus        95 l~~n~l~~~~p  105 (116)
                      +++|++ +.++
T Consensus       249 Ls~N~i-~~i~  258 (305)
T d1xkua_         249 LHNNNI-SAIG  258 (305)
T ss_dssp             CCSSCC-CCCC
T ss_pred             CCCCcc-CccC
Confidence            888888 4443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=2.4e-13  Score=79.26  Aligned_cols=104  Identities=22%  Similarity=0.320  Sum_probs=80.7

Q ss_pred             ccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc--HHH
Q 035618            7 DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP--ESL   84 (116)
Q Consensus         7 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~--~~~   84 (116)
                      .++ .+..+++|+.|++++|.+ ..++.....+++|+.+++++|.+. .+ +.+..+++|+.+++++|++.. ++  ..+
T Consensus        62 ~i~-~l~~l~~L~~L~Ls~N~i-~~i~~~~~~~~~L~~L~l~~N~i~-~l-~~~~~l~~L~~L~L~~N~i~~-~~~~~~l  136 (198)
T d1m9la_          62 KIS-SLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITN-WGEIDKL  136 (198)
T ss_dssp             CCC-CHHHHTTCCEEECCEEEE-CSCSSHHHHHHHCCEEECSEEECC-CH-HHHHHHHHSSEEEESEEECCC-HHHHHHH
T ss_pred             Ccc-cccCCccccChhhccccc-cccccccccccccccccccccccc-cc-ccccccccccccccccchhcc-ccccccc
Confidence            444 588899999999999998 456655555678999999999988 33 457789999999999999863 33  357


Q ss_pred             hcccCCCEEecccCccccccchH----------HhhhcCCC
Q 035618           85 GKLLKLHYLDLSKNQFFQELPKE----------LEKVVQLS  115 (116)
Q Consensus        85 ~~~~~l~~l~l~~n~l~~~~p~~----------~~~l~~L~  115 (116)
                      ..+++|+.+++++|++....+..          +..+++|+
T Consensus       137 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~  177 (198)
T d1m9la_         137 AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             TTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCC
T ss_pred             cCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcC
Confidence            88999999999999985543321          55666664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.24  E-value=5.2e-11  Score=69.11  Aligned_cols=74  Identities=27%  Similarity=0.463  Sum_probs=51.2

Q ss_pred             hcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           36 LGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        36 ~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      +..+++|+.+++++|.+. .+ +.+..+.+++.+++.+|.+.+ ++ .+.++++|+.|++++|++ ..++ .++.+++|+
T Consensus       124 ~~~l~~L~~L~l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i-~~i~-~l~~L~~L~  197 (199)
T d2omxa2         124 LKNLTNLNRLELSSNTIS-DI-SALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKV-SDIS-VLAKLTNLE  197 (199)
T ss_dssp             GTTCTTCSEEECCSSCCC-CC-GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCC-CCCG-GGGGCTTCS
T ss_pred             cchhhhhHHhhhhhhhhc-cc-ccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCC-CCCc-cccCCCCCC
Confidence            455666667777666665 23 346667777777777777653 32 477888999999999988 4555 477788776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.2e-11  Score=68.30  Aligned_cols=91  Identities=13%  Similarity=0.140  Sum_probs=73.7

Q ss_pred             CcccceeeccccccccccchhhcCCCCCCeEecccC-cceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEE
Q 035618           15 SSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWN-QFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYL   93 (116)
Q Consensus        15 l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~-~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l   93 (116)
                      ......++..++.+ ...|..+..+++++.+++.++ .+...-+..|..+++|+.|++++|++...-+..|..+++|+.+
T Consensus         7 c~~~~~l~c~~~~~-~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           7 PHGSSGLRCTRDGA-LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CSSSSCEECCSSCC-CTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             cCCCCeEEecCCCC-ccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            34456678888777 556778888999999999766 4774445678899999999999999987667889999999999


Q ss_pred             ecccCccccccchH
Q 035618           94 DLSKNQFFQELPKE  107 (116)
Q Consensus        94 ~l~~n~l~~~~p~~  107 (116)
                      ++++|.+ +.+|..
T Consensus        86 ~Ls~N~l-~~l~~~   98 (156)
T d2ifga3          86 NLSFNAL-ESLSWK   98 (156)
T ss_dssp             ECCSSCC-SCCCST
T ss_pred             eccCCCC-cccChh
Confidence            9999999 555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=9.4e-11  Score=68.53  Aligned_cols=98  Identities=28%  Similarity=0.315  Sum_probs=64.3

Q ss_pred             ccCCcccceeeccccccccccchhhcCCCCCCeEecccCccee--------------------cCchhhhccCCCCeEEe
Q 035618           12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTG--------------------RLPPEISSFIKLEDIGL   71 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~--------------------~~~~~~~~~~~L~~l~l   71 (116)
                      +..+++|++|++++|+++ .++ .+..+++|+.+++.+|....                    ..+..+..+++|+.+++
T Consensus        86 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l  163 (210)
T d1h6ta2          86 LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL  163 (210)
T ss_dssp             GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred             cccCcccccccccccccc-ccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            566777777777777763 333 35666667766666654431                    01223455677888888


Q ss_pred             eceeeccCCcHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           72 SINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        72 ~~n~~~~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      ++|++.+ ++ .+..+++|+.|++++|.+ +.+| .+..+++|+
T Consensus       164 ~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i-~~l~-~l~~l~~L~  203 (210)
T d1h6ta2         164 EDNQISD-IV-PLAGLTKLQNLYLSKNHI-SDLR-ALAGLKNLD  203 (210)
T ss_dssp             CSSCCCC-CG-GGTTCTTCCEEECCSSCC-CBCG-GGTTCTTCS
T ss_pred             ccccccc-cc-cccCCCCCCEEECCCCCC-CCCh-hhcCCCCCC
Confidence            8887754 33 367888888888888888 4565 477777765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=1e-10  Score=67.78  Aligned_cols=84  Identities=21%  Similarity=0.315  Sum_probs=43.2

Q ss_pred             CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCC
Q 035618           11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKL   90 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l   90 (116)
                      .+..+++|++|++++|.+++. ++ +..+++|+.+++++|.+. .++ .+..++.|+.+++.++.....  ..+..+++|
T Consensus        57 ~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L  130 (199)
T d2omxa2          57 GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNL  130 (199)
T ss_dssp             TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTC
T ss_pred             ccccCCCcCcCccccccccCc-cc-ccCCcccccccccccccc-ccc-ccccccccccccccccccccc--cccchhhhh
Confidence            356667777777777776443 22 566667777777666654 222 244444455555444433211  123334444


Q ss_pred             CEEecccCcc
Q 035618           91 HYLDLSKNQF  100 (116)
Q Consensus        91 ~~l~l~~n~l  100 (116)
                      +.+++++|.+
T Consensus       131 ~~L~l~~n~l  140 (199)
T d2omxa2         131 NRLELSSNTI  140 (199)
T ss_dssp             SEEECCSSCC
T ss_pred             HHhhhhhhhh
Confidence            4444444443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=9.8e-11  Score=73.33  Aligned_cols=74  Identities=26%  Similarity=0.460  Sum_probs=53.7

Q ss_pred             hcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           36 LGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        36 ~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      +..+++++.+++++|.+.+ ++ .+..+++|+.|++++|+++. ++ .+..+++|+++++++|++++..|  +.++++|+
T Consensus       303 ~~~~~~l~~L~ls~n~l~~-l~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~  376 (384)
T d2omza2         303 ISNLKNLTYLTLYFNNISD-IS-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRIT  376 (384)
T ss_dssp             GGGCTTCSEEECCSSCCSC-CG-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCS
T ss_pred             cchhcccCeEECCCCCCCC-Cc-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCC
Confidence            4556677777777777763 33 36778888899998888753 44 57888899999999998855443  67777665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.17  E-value=1.9e-10  Score=67.25  Aligned_cols=98  Identities=28%  Similarity=0.308  Sum_probs=69.1

Q ss_pred             CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc---------
Q 035618           11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP---------   81 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~---------   81 (116)
                      .+..+++|+.|++++|.+++ ++ .+..+++|+.+++++|+++ .++ .+..+++|+.+++.+|.+.. ++         
T Consensus        63 ~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~~-~~~l~~l~~l~  137 (210)
T d1h6ta2          63 GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLE  137 (210)
T ss_dssp             TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCC-CGGGGGCTTCC
T ss_pred             hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-cccccccccccccccccccc-ccccccccccc
Confidence            47789999999999999955 44 3678999999999999988 444 56778888888888876532 11         


Q ss_pred             ------------HHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           82 ------------ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        82 ------------~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                                  ..+..+++|+.+++++|.++ .++. ++++++|+
T Consensus       138 ~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~-~i~~-l~~l~~L~  181 (210)
T d1h6ta2         138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQ  181 (210)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCC
T ss_pred             cccccccccccccccccccccccccccccccc-cccc-ccCCCCCC
Confidence                        12334556667777777663 3332 55565554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.10  E-value=2.2e-10  Score=71.71  Aligned_cols=83  Identities=18%  Similarity=0.324  Sum_probs=70.1

Q ss_pred             CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCC
Q 035618           11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKL   90 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l   90 (116)
                      .+..++.++.+++++|.+.+. + .+..+++|+.+++++|.++ .++ .+..+++|+.+++++|++++..|  +.++++|
T Consensus       302 ~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L  375 (384)
T d2omza2         302 PISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP--LANLTRI  375 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred             ccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCC
Confidence            467788999999999998554 3 3788999999999999998 444 68899999999999999876543  7899999


Q ss_pred             CEEecccCc
Q 035618           91 HYLDLSKNQ   99 (116)
Q Consensus        91 ~~l~l~~n~   99 (116)
                      +.|++++|.
T Consensus       376 ~~L~L~~Na  384 (384)
T d2omza2         376 TQLGLNDQA  384 (384)
T ss_dssp             SEEECCCEE
T ss_pred             CEeeCCCCc
Confidence            999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=4e-10  Score=66.79  Aligned_cols=94  Identities=20%  Similarity=0.311  Sum_probs=72.2

Q ss_pred             cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCc-hhhhccCCCCeEEeec-eeeccCCcHH
Q 035618            6 GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLP-PEISSFIKLEDIGLSI-NRFISSIPES   83 (116)
Q Consensus         6 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~-n~~~~~~~~~   83 (116)
                      +.+|..+.  ++++.|++++|.+....+..|..+++|+++++++|.+...++ ..+..++.++.+.+.. +.+....+..
T Consensus        21 ~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~   98 (242)
T d1xwdc1          21 TEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA   98 (242)
T ss_dssp             SSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS
T ss_pred             CCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccc
Confidence            46676554  578999999999955444568889999999999998764444 3577788888888764 4555555566


Q ss_pred             HhcccCCCEEecccCccc
Q 035618           84 LGKLLKLHYLDLSKNQFF  101 (116)
Q Consensus        84 ~~~~~~l~~l~l~~n~l~  101 (116)
                      +..+++|+.+++.+|.+.
T Consensus        99 ~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             EECCTTCCEEEEESCCCC
T ss_pred             ccccccccccccchhhhc
Confidence            888999999999999884

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.95  E-value=3.4e-09  Score=62.30  Aligned_cols=74  Identities=23%  Similarity=0.275  Sum_probs=57.1

Q ss_pred             hcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618           36 LGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS  115 (116)
Q Consensus        36 ~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~  115 (116)
                      +..+++++.+++.+|.+..  ...+..+++|+.+++++|++.+ ++ .+..+++|+.|++++|+++ .++. +..++.|+
T Consensus       147 ~~~~~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt-~i~~-l~~l~~L~  220 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQIS-DVSP-LANTSNLF  220 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCC-BCGG-GTTCTTCC
T ss_pred             hcccccccccccccccccc--chhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCC-CCcc-cccCCCCC
Confidence            5567778889888888762  2347788999999999998864 44 3788999999999999994 4553 67777765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.89  E-value=3.7e-09  Score=62.13  Aligned_cols=81  Identities=17%  Similarity=0.232  Sum_probs=66.6

Q ss_pred             CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCC
Q 035618           11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKL   90 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l   90 (116)
                      .+..+++|+.+++++|.+... + .+..+++|+.+++++|.+. .++ .+..+++|+.|++++|+++. ++ .+.++++|
T Consensus       146 ~~~~~~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~Ls~n~l~-~l~-~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L  219 (227)
T d1h6ua2         146 PLAGLTNLQYLSIGNAQVSDL-T-PLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISD-VS-PLANTSNL  219 (227)
T ss_dssp             GGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECTTSCCCB-CG-GGTTCTTC
T ss_pred             hhccccccccccccccccccc-h-hhcccccceecccCCCccC-CCh-hhcCCCCCCEEECcCCcCCC-Cc-ccccCCCC
Confidence            467788899999999988443 2 3788999999999999988 444 47889999999999999864 44 37899999


Q ss_pred             CEEeccc
Q 035618           91 HYLDLSK   97 (116)
Q Consensus        91 ~~l~l~~   97 (116)
                      +.+++++
T Consensus       220 ~~L~lsn  226 (227)
T d1h6ua2         220 FIVTLTN  226 (227)
T ss_dssp             CEEEEEE
T ss_pred             CEEEeeC
Confidence            9999864

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.8e-09  Score=59.85  Aligned_cols=69  Identities=23%  Similarity=0.114  Sum_probs=47.1

Q ss_pred             hcCCCCCCeEecccCcceec--CchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccCcccccc
Q 035618           36 LGKLNSLTKLILKWNQFTGR--LPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQEL  104 (116)
Q Consensus        36 ~~~l~~l~~l~l~~~~~~~~--~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l~~~~  104 (116)
                      ...+++|+++++++|++...  ++..+..+++|+.+++++|.+...-+..+....+++.+++.+|++....
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCc
Confidence            34578888888888888732  1234667888888888888875432223344556888888888885543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.6e-08  Score=59.67  Aligned_cols=109  Identities=17%  Similarity=0.128  Sum_probs=59.0

Q ss_pred             ccccccCcCccCCcccceeeccccccccccchh-hcCCC-------------------------CCCeEecccCcceecC
Q 035618            3 NSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPND-LGKLN-------------------------SLTKLILKWNQFTGRL   56 (116)
Q Consensus         3 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~-~~~l~-------------------------~l~~l~l~~~~~~~~~   56 (116)
                      ++....+..+..+++|+.+++++|.+....+.. +..+.                         .++.+++.+|.+. .+
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i  168 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EI  168 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EE
T ss_pred             cccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-cc
Confidence            444455556677777888887777653221111 11111                         2334444444444 23


Q ss_pred             chhhhccCCCCeEE-eeceeeccCCc-HHHhcccCCCEEecccCccccccch-HHhhhcCC
Q 035618           57 PPEISSFIKLEDIG-LSINRFISSIP-ESLGKLLKLHYLDLSKNQFFQELPK-ELEKVVQL  114 (116)
Q Consensus        57 ~~~~~~~~~L~~l~-l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~l~~~~p~-~~~~l~~L  114 (116)
                      +........+..+. +.+|.++ .+| ..|.++++|+.+++++|.++ .+|. .|.+++.|
T Consensus       169 ~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L  227 (242)
T d1xwdc1         169 HNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKL  227 (242)
T ss_dssp             CTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEE
T ss_pred             ccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCccc
Confidence            33322334443333 3445554 444 35788899999999999994 5543 45665554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2.5e-08  Score=55.84  Aligned_cols=81  Identities=22%  Similarity=0.198  Sum_probs=61.7

Q ss_pred             cCCcccceeeccccccccc--cchhhcCCCCCCeEecccCcceecCch-hhhccCCCCeEEeeceeeccCCc-------H
Q 035618           13 GKSSHLHAFDLLFNHLFVE--IPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSINRFISSIP-------E   82 (116)
Q Consensus        13 ~~l~~L~~l~l~~n~~~~~--~~~~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~-------~   82 (116)
                      ..++.|+.|++++|+++..  ++..+..+++|+.+++++|.+. .+++ .......++.+++.+|++.....       .
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            4578999999999999653  2345667999999999999998 5554 33445578999999998865433       2


Q ss_pred             HHhcccCCCEEe
Q 035618           83 SLGKLLKLHYLD   94 (116)
Q Consensus        83 ~~~~~~~l~~l~   94 (116)
                      .+..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            255788998886

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.48  E-value=1.7e-07  Score=57.52  Aligned_cols=74  Identities=30%  Similarity=0.388  Sum_probs=33.1

Q ss_pred             ccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecc
Q 035618           17 HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLS   96 (116)
Q Consensus        17 ~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~   96 (116)
                      +|+.|++++|.+ ..+|..   +.+|+.+++.+|++. .+++..   +.|++|++++|.+. .+|. +..+++|+++++.
T Consensus        59 ~L~~L~Ls~N~l-~~lp~~---~~~L~~L~l~~n~l~-~l~~lp---~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~  128 (353)
T d1jl5a_          59 HLESLVASCNSL-TELPEL---PQSLKSLLVDNNNLK-ALSDLP---PLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVD  128 (353)
T ss_dssp             TCSEEECCSSCC-SSCCCC---CTTCCEEECCSSCCS-CCCSCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECC
T ss_pred             CCCEEECCCCCC-cccccc---hhhhhhhhhhhcccc-hhhhhc---cccccccccccccc-cccc-hhhhccceeeccc
Confidence            444555555544 233322   234444444444444 232211   23555555555543 3332 3445555555555


Q ss_pred             cCcc
Q 035618           97 KNQF  100 (116)
Q Consensus        97 ~n~l  100 (116)
                      +|.+
T Consensus       129 ~~~~  132 (353)
T d1jl5a_         129 NNSL  132 (353)
T ss_dssp             SSCC
T ss_pred             cccc
Confidence            5555

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.8e-08  Score=63.89  Aligned_cols=91  Identities=19%  Similarity=0.142  Sum_probs=60.6

Q ss_pred             ccCCcccceeecccccccc----ccchhhcCCCCCCeEecccCcceecC----chhhh-ccCCCCeEEeeceeeccC---
Q 035618           12 IGKSSHLHAFDLLFNHLFV----EIPNDLGKLNSLTKLILKWNQFTGRL----PPEIS-SFIKLEDIGLSINRFISS---   79 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~----~~~~~~~~l~~l~~l~l~~~~~~~~~----~~~~~-~~~~L~~l~l~~n~~~~~---   79 (116)
                      +..+++++.|++++|.++.    .+...+..+++|+.+++++|.+....    ...+. ....|+.|++++|+++..   
T Consensus        23 ~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~  102 (460)
T d1z7xw1          23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  102 (460)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             HHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccc
Confidence            4456788888888887753    23444567888888888888775221    11221 124688888888877533   


Q ss_pred             -CcHHHhcccCCCEEecccCcccc
Q 035618           80 -IPESLGKLLKLHYLDLSKNQFFQ  102 (116)
Q Consensus        80 -~~~~~~~~~~l~~l~l~~n~l~~  102 (116)
                       ++..+..+++|+.+++++|.++.
T Consensus       103 ~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1         103 VLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             cccchhhccccccccccccccchh
Confidence             23445667888889988888743

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.6e-08  Score=63.15  Aligned_cols=100  Identities=15%  Similarity=0.096  Sum_probs=66.0

Q ss_pred             cccceeecccccccccc-chhhcCCCCCCeEecccCccee----cCchhhhccCCCCeEEeeceeeccCCcHHHh-----
Q 035618           16 SHLHAFDLLFNHLFVEI-PNDLGKLNSLTKLILKWNQFTG----RLPPEISSFIKLEDIGLSINRFISSIPESLG-----   85 (116)
Q Consensus        16 ~~L~~l~l~~n~~~~~~-~~~~~~l~~l~~l~l~~~~~~~----~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~-----   85 (116)
                      +.|+.||++.++++... ..-+..+++++++++.+|.++.    .++..+..+++|+.|++++|.++..--..+.     
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            36788999999886532 3335567888999999998763    2234567788999999999876421111222     


Q ss_pred             cccCCCEEecccCccccc----cchHHhhhcCCC
Q 035618           86 KLLKLHYLDLSKNQFFQE----LPKELEKVVQLS  115 (116)
Q Consensus        86 ~~~~l~~l~l~~n~l~~~----~p~~~~~l~~L~  115 (116)
                      ...+|+.|++++|.++..    ++..+..++.|+
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~  115 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ  115 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCC
T ss_pred             CCCCCCEEECCCCCccccccccccchhhcccccc
Confidence            124689999999998543    234444555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.31  E-value=2.3e-07  Score=56.97  Aligned_cols=67  Identities=30%  Similarity=0.358  Sum_probs=51.7

Q ss_pred             CCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccCccccccchHHhhhcCC
Q 035618           39 LNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL  114 (116)
Q Consensus        39 l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L  114 (116)
                      +++|+.+++++|.+. .+|..   +++|+.|++++|+++ .+|+   .+.+|+.|++++|++ ..+|+....+..|
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~L-~~lp~~~~~L~~L  349 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPL-REFPDIPESVEDL  349 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC-SSCCCCCTTCCEE
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-cccc---ccCCCCEEECcCCcC-CCCCccccccCee
Confidence            578999999999998 67754   467899999999986 5664   356899999999998 5677644444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1e-06  Score=53.25  Aligned_cols=102  Identities=19%  Similarity=0.196  Sum_probs=51.3

Q ss_pred             CCcccceeeccccc-cccc-cchhhcC-CCCCCeEecccCc--ceec-CchhhhccCCCCeEEeecee-eccCCcHHHhc
Q 035618           14 KSSHLHAFDLLFNH-LFVE-IPNDLGK-LNSLTKLILKWNQ--FTGR-LPPEISSFIKLEDIGLSINR-FISSIPESLGK   86 (116)
Q Consensus        14 ~l~~L~~l~l~~n~-~~~~-~~~~~~~-l~~l~~l~l~~~~--~~~~-~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~   86 (116)
                      .+++|+.|+++++. ++.. +...+.. .++|+.+++.++.  +... +......+++|+.|+++++. ++......+..
T Consensus       119 ~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~  198 (284)
T d2astb2         119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ  198 (284)
T ss_dssp             HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred             HHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcc
Confidence            46777777777753 2211 1111222 3566666666542  2111 11223446666777766543 33333445556


Q ss_pred             ccCCCEEecccC-ccccccchHHhhhcCCC
Q 035618           87 LLKLHYLDLSKN-QFFQELPKELEKVVQLS  115 (116)
Q Consensus        87 ~~~l~~l~l~~n-~l~~~~p~~~~~l~~L~  115 (116)
                      +++|+++++++| .++......++++++|+
T Consensus       199 ~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~  228 (284)
T d2astb2         199 LNYLQHLSLSRCYDIIPETLLELGEIPTLK  228 (284)
T ss_dssp             CTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cCcCCEEECCCCCCCChHHHHHHhcCCCCC
Confidence            666677777664 34444444455555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=7.7e-07  Score=53.82  Aligned_cols=85  Identities=19%  Similarity=0.159  Sum_probs=50.6

Q ss_pred             CCcccceeeccccccccc-cchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeecee-eccC-CcHHHhcccCC
Q 035618           14 KSSHLHAFDLLFNHLFVE-IPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR-FISS-IPESLGKLLKL   90 (116)
Q Consensus        14 ~l~~L~~l~l~~n~~~~~-~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~-~~~~~~~~~~l   90 (116)
                      ...+|+.|+++++.++.. +..-+..+++|+.+++.++.+....+..+.++++|+.++++++. ++.. +......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            445677777777766433 22334556777777777776665555566667777777776643 2211 11123456677


Q ss_pred             CEEecccC
Q 035618           91 HYLDLSKN   98 (116)
Q Consensus        91 ~~l~l~~n   98 (116)
                      +.++++++
T Consensus       124 ~~L~ls~c  131 (284)
T d2astb2         124 DELNLSWC  131 (284)
T ss_dssp             CEEECCCC
T ss_pred             cccccccc
Confidence            77777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.20  E-value=7.3e-07  Score=55.07  Aligned_cols=90  Identities=22%  Similarity=0.261  Sum_probs=47.2

Q ss_pred             CccCCcccceeeccccccccc----cchhhcCCCCCCeEecccCcceecCch----hhhc--cCCCCeEEeeceeeccC-
Q 035618           11 EIGKSSHLHAFDLLFNHLFVE----IPNDLGKLNSLTKLILKWNQFTGRLPP----EISS--FIKLEDIGLSINRFISS-   79 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~l~~l~l~~~~~~~~~~~----~~~~--~~~L~~l~l~~n~~~~~-   79 (116)
                      .+...++|+.|++++|.++..    +...+..+++|+.+++++|.+......    .+..  ...++.+++++|.+... 
T Consensus       210 ~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~  289 (344)
T d2ca6a1         210 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA  289 (344)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred             hhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHH
Confidence            344556666666666665332    223445566666666666666532111    2222  23566677766665321 


Q ss_pred             ---CcHHHh-cccCCCEEecccCcc
Q 035618           80 ---IPESLG-KLLKLHYLDLSKNQF  100 (116)
Q Consensus        80 ---~~~~~~-~~~~l~~l~l~~n~l  100 (116)
                         +...+. ..+.|+.+++++|.+
T Consensus       290 ~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         290 VRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             HHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHHHHHHHHccCCCCCEEECCCCcC
Confidence               112221 345667777777766

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.07  E-value=9e-07  Score=54.66  Aligned_cols=92  Identities=23%  Similarity=0.258  Sum_probs=60.6

Q ss_pred             ccCCcccceeeccccccccc-----cchhhcCCCCCCeEecccCcceec----CchhhhccCCCCeEEeeceeeccCCc-
Q 035618           12 IGKSSHLHAFDLLFNHLFVE-----IPNDLGKLNSLTKLILKWNQFTGR----LPPEISSFIKLEDIGLSINRFISSIP-   81 (116)
Q Consensus        12 ~~~l~~L~~l~l~~n~~~~~-----~~~~~~~l~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~~-   81 (116)
                      +...+.++.++++.|.+...     +...+...++|+.+++++|.+...    +...+..++.|+.+++++|.+...-. 
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            34556788888888877432     223455678888888888876532    23455677888888888887754321 


Q ss_pred             ---HHHhc--ccCCCEEecccCccccc
Q 035618           82 ---ESLGK--LLKLHYLDLSKNQFFQE  103 (116)
Q Consensus        82 ---~~~~~--~~~l~~l~l~~n~l~~~  103 (116)
                         ..+..  ...++.|++++|.+...
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~  288 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIELD  288 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCChH
Confidence               22222  35688899998888443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.85  E-value=1.4e-05  Score=44.57  Aligned_cols=87  Identities=10%  Similarity=0.043  Sum_probs=57.4

Q ss_pred             CCcccceeecccc-ccccc----cchhhcCCCCCCeEecccCcceec----CchhhhccCCCCeEEeeceeeccCC----
Q 035618           14 KSSHLHAFDLLFN-HLFVE----IPNDLGKLNSLTKLILKWNQFTGR----LPPEISSFIKLEDIGLSINRFISSI----   80 (116)
Q Consensus        14 ~l~~L~~l~l~~n-~~~~~----~~~~~~~l~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~----   80 (116)
                      +.+.|+.|+++++ .++..    +-..+...++++.+++++|.+...    +...+...+.|+.+++++|.+...-    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3577888888864 34332    223455667888999988887632    2234556778889999888775321    


Q ss_pred             cHHHhcccCCCEEecccCcc
Q 035618           81 PESLGKLLKLHYLDLSKNQF  100 (116)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l  100 (116)
                      -..+...+.|+.|++.+|.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSS
T ss_pred             HHHHHhCCcCCEEECCCCcC
Confidence            12344557788999888765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.43  E-value=0.00011  Score=40.83  Aligned_cols=90  Identities=14%  Similarity=0.049  Sum_probs=63.7

Q ss_pred             CccCCcccceeeccccccccc----cchhhcCCCCCCeEecccCcceec----CchhhhccCCCCeEEeeceeeccC---
Q 035618           11 EIGKSSHLHAFDLLFNHLFVE----IPNDLGKLNSLTKLILKWNQFTGR----LPPEISSFIKLEDIGLSINRFISS---   79 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~---   79 (116)
                      .+...+.|+.|++++|.+...    +...+...+.|+.+++++|.+...    +...+...+.|+.|++.+|.+...   
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~  118 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  118 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHH
Confidence            355667899999999988543    223455568899999999988743    223466678899999988764321   


Q ss_pred             ----CcHHHhcccCCCEEecccCcc
Q 035618           80 ----IPESLGKLLKLHYLDLSKNQF  100 (116)
Q Consensus        80 ----~~~~~~~~~~l~~l~l~~n~l  100 (116)
                          +...+..-+.|+.+++..+..
T Consensus       119 ~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         119 VEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHhCCCccEeeCcCCCc
Confidence                223345668899999987765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.92  E-value=0.0004  Score=38.26  Aligned_cols=88  Identities=14%  Similarity=0.080  Sum_probs=51.4

Q ss_pred             cCCcccceeeccc-cccccc----cchhhcCCCCCCeEecccCcceecC----chhhhccCCCCeEEeeceeeccCC---
Q 035618           13 GKSSHLHAFDLLF-NHLFVE----IPNDLGKLNSLTKLILKWNQFTGRL----PPEISSFIKLEDIGLSINRFISSI---   80 (116)
Q Consensus        13 ~~l~~L~~l~l~~-n~~~~~----~~~~~~~l~~l~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~n~~~~~~---   80 (116)
                      .+.+.|+.|++++ +.++..    +-..+...++|+.+++++|.+....    ...+.....++.+++..+.+....   
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3456788888876 344322    2234456778888888888765322    224455677888888777654321   


Q ss_pred             -cHHHhcccCCCEEec--ccCcc
Q 035618           81 -PESLGKLLKLHYLDL--SKNQF  100 (116)
Q Consensus        81 -~~~~~~~~~l~~l~l--~~n~l  100 (116)
                       -..+...++++.+++  ++|.+
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i  116 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPL  116 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCC
T ss_pred             HHHHHHhCccccEEeeccCCCcC
Confidence             123445566765444  45555

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.22  E-value=0.0014  Score=35.92  Aligned_cols=90  Identities=17%  Similarity=0.140  Sum_probs=61.6

Q ss_pred             CccCCcccceeeccccccccc----cchhhcCCCCCCeEecccCcceec----CchhhhccCCCCeEEee--ceeecc--
Q 035618           11 EIGKSSHLHAFDLLFNHLFVE----IPNDLGKLNSLTKLILKWNQFTGR----LPPEISSFIKLEDIGLS--INRFIS--   78 (116)
Q Consensus        11 ~~~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~--~n~~~~--   78 (116)
                      .+...++|+.|++++|.++..    +...+....+++.+++..+.+...    +...+...+.++.+.+.  .|.+..  
T Consensus        41 al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~  120 (166)
T d1io0a_          41 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV  120 (166)
T ss_dssp             HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred             HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHH
Confidence            345678899999999987553    223445578899999999887532    23355667888876664  455432  


Q ss_pred             --CCcHHHhcccCCCEEecccCcc
Q 035618           79 --SIPESLGKLLKLHYLDLSKNQF  100 (116)
Q Consensus        79 --~~~~~~~~~~~l~~l~l~~n~l  100 (116)
                        .+...+...+.|+.+++..+..
T Consensus       121 ~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         121 EMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHhCCCcCEEeCcCCCC
Confidence              1223456778999999988765