Citrus Sinensis ID: 035625

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950----
MANPPKPWKVEYAKSGRSSCRSCKSNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRKANQIKSLDDVEGIESLRWEDQQKIRKYVEEGVGSGSSSKSNVTAAEYGIEVSQTSRATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFLDLSPSTQVEKLSGWGNLTVSDQGAVKALVNVPSTTKNGDVSTSRAASVASSNNLPDEHASDLESKLEAQTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMMFGALGRCPICSGPLRYSGGIYRCRGYQSAWSKCSYSTREPERLKGKWKIPEETNSQYLVKWFKSQRTKKPIRVLPPRTSNSPASSQASKSPCQSSKSENLGDLRVSFSRLPKESKCVSCCLINESAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKRQKKLPFDLYKVEVVGESSSMVTIKVKGRSAVHEASGMQDTGHILEDGKSVYNTTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSKLEECSKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKILPTGYCTSYSLSDYGVNKQVSEKIGTDADSQLAPALVELMKMLFNVETYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNNGAYDPSVKESLIIDASNRFFTVIPSIHPHVIRDEDDFKSKVKMLEALQDIEIASRLVGFDVDSDDSLDEKYKKLCCDIAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPVPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHKR
cccccccEEEEEcccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccEEEEccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEEEEcccccccccHHHHHHHHccccEEccHHHHHHHHHccccccccccccccccccccEEEEEccccccccccccccccEEEEcccEEEEEEEEccccccccccEEEEEEEEccccccEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccccccEEEEEEEccccccccHHHHcccccEEEEcccccccHHHHHHcccccccccccccccccEEEEEEccccHHccccccccccccEEEEEEEEEEccccEEccccccccccccccccccccccccccccccEEEcccEEEccccccccccccccccccEEEEEEcccccEEEEEEEEEEEcc
ccccccccEEEEEcccccccHHcccccccccEEEEEEEccccccccccccccHHHHHccccccccHHHccccHHccHHHHHHHHHHHHHcccccccccccccHHccEEEEEcccccccccccHEEEcccEEEEEEcccccccccccEcHHHHHcccccccHHHcccHHcccHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccEEEEEccEEEEEEEEcccEEEEEEcccccccccccEccHHHHHHHHHHHHHHcccccccEcccccccccccccccccccccccccHHHccccHcHHHHHHHHHHcccEEEEEcccEEEEEEccHHHHHHHHHHHHHHccccEEcHHHHHHHHHHcccccccccccccccccccEEEEEEcccccccccccccccEEEEEEccEEEEEEEEEEEcccccccEEEEEEEEcccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHccccccccccEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHccEccccccHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccccEcccccHHHHHHHHHHHHcccccccccEEEEEEEEEEEccccHHHccHHHHHcccEEEEEEEccHHHHHHHHHHccccccccccHHHccccccEEEEccHHHHHHHHcccccccEEEEEEEEEEcccEEEEccccccccccccccEEEEcEEEEEcccccEEEcccEEEccccEEEcccccccEEEcEEEEccHHHEEEEEEEEEEEEccc
manppkpwkveyaksgrsscrscKSNIEKEALRLGKmvqssqfdgfmpmwnhaSCVLrkanqikslddvegieSLRWEDQQKIRKYVEegvgsgsssksnvTAAEYGIEVSQTSRATCRHCSkkimkgevrisakpdgqgtkglawhhancfldlspstqveklsgwgnltvsdqGAVKALVnvpsttkngdvstsraasvassnnlpdehasDLESKLEAQTKELWALKDDLKKHVTTAELREMLEangqdstgseldlrdhcadgmmfgalgrcpicsgplrysggiyrcrgyqsawskcsystreperlkgkwkipeetnSQYLVKWFKsqrtkkpirvlpprtsnspassqaskspcqssksenlgdlrvsfsrlpkeskcvscclinesaetnclvlggvpddpdaEMRKARKMKVPIVREDYLVDCFKrqkklpfdlykvevvgesssmvtIKVKGrsavheasgmqdtghiledgksvynttlnmsdlstgvnSYYILQIIqddkgsdcyvfrkwgrvgndkiggskleecskEDAVCEFKRLFLEKTGNPWEAWEQKQnfqkkpgkilptgyctsyslsdygvnkqvsekigtdadsQLAPALVELMKMLFNVETYRAAMMEFDinmsemplgklskNNIQKGFEALTEIQNLLnngaydpsvkesliidasnrfftvipsihphvirdeddFKSKVKMLEALQDIEIASrlvgfdvdsddslDEKYKKLccdiaplphdsedYQLIEKYLhathapthtdwsleLEEVFSleregefdkFSSYQRKLKNRMLLWHGSRLTNFVGILsqglriappeapatgymfgkgIYFADLVSKSAqycftdkknpvgLMLLSEvglgevyelkkakymdkppdgkhstkglgktvpqesdfvkwrddvtvpcgkpvpsnvraselMYNEYIVYNTAQVKMQFLLKVRFHHKR
manppkpwkveyaksgrsscrscKSNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRKANQIKSLDDVEGIESLRWEDQQKIRKYVeegvgsgsssksnvTAAEYGievsqtsratcrHCSKkimkgevrisaKPDGQGTKGLAWHHANCFLDLSPSTQVEKLSGWGNLTVSDQGAVKALVNvpsttkngdvstsraasvassnnlpdehASDLESKLEAQTKELWALKDDLKKHVTTAELREMleangqdstgsELDLRDHCADGMMFGALGRCPICSGPLRYSGGIYRCRGYQsawskcsystreperlkgkwkipeetnsqYLVKWFksqrtkkpirvlpprtsnspassqaskspcqssksenlGDLRVSFSRLPKESKCVSCCLINEsaetnclvlggvpddpdaemrkarkmkvpivredYLVDCFkrqkklpfdlykvevvgesssmvtikVKGRSAVHeasgmqdtghileDGKSVYNTTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGrvgndkiggskleecskEDAVCEFKRLFLEKTGNPWEAWEQKqnfqkkpgkilPTGYCTSYSLSDYGVNKQVSEKIGTDADSQLAPALVELMKMLFNVETYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNNGAYDPSVKESLIIDASNRFFTVIpsihphvirdeddFKSKVKMLEALQDIEIASRLVGFDVDSDDSLDEKYKKLCCDIAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAkymdkppdgkhstkglgktvpqesdfvkwrddvtvpcgkpvpsnvrasELMYNEYIVYNTAQVKMQFLLKVRFHHKR
MANPPKPWKVEYAksgrsscrscksNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRKANQIKSLDDVEGIESLRWEDQQKIRKYveegvgsgsssKSNVTAAEYGIEVSQTSRATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFLDLSPSTQVEKLSGWGNLTVSDQGAVKALVNVPSTTKNGDvstsraasvassNNLPDEHASDLESKLEAQTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMMFGALGRCPICSGPLRYSGGIYRCRGYQSAWSKCSYSTREPERLKGKWKIPEETNSQYLVKWFKSQRTKKPIRVLPPRTsnspassqaskspcqssksENLGDLRVSFSRLPKESKCVSCCLINESAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKRQKKLPFDLYKVEVVGESSSMVTIKVKGRSAVHEASGMQDTGHILEDGKSVYNTTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSKLEECSKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKILPTGYCTSYSLSDYGVNKQVSEKIGTDADSQLAPALVELMKMLFNVETYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNNGAYDPSVKESLIIDASNRFFTVIPSIHPHVIRDEDDFKSKVKMLEALQDIEIASRLVGFDVDSDDSLDEKYKKLCCDIAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPVPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHKR
*********************************LGKMVQSSQFDGFMPMWNHASCVLRKANQIKSLDDVEGIESLRWEDQQKIR*Y*********************I*******ATCRHCSKKIMKG*V*********GTKGLAWHHANCFLDLSPSTQVEKLSGWGNLTVSDQGAVKALVN******************************************LWAL******************************LRDHCADGMMFGALGRCPICSGPLRYSGGIYRCRGYQSAWSKCSYSTR****LKGKWKIPEETNSQYLVKWFK**************************************************SKCVSCCLINESAETNCLVLGGV*************MKVPIVREDYLVDCFKRQKKLPFDLYKVEVVGESSSMVTIKVK**************GHILEDGKSVYNTTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSKLEECSKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKILPTGYCTSYSLSDYGVNKQVSEKIGTDADSQLAPALVELMKMLFNVETYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNNGAYDPSVKESLIIDASNRFFTVIPSIHPHVIRDEDDFKSKVKMLEALQDIEIASRLVGFDVDSDDSLDEKYKKLCCDIAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKA************************DFVKWRDDVTVPCGKPVPSNVRASELMYNEYIVYNTAQVKMQFLLKVRF****
****PKP*KVEYAKSGRSSCRSCKSNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRKANQIKSLDDVEGIESLRWEDQQKIRKYVEEGVGSG***********************************V*************LAWHHANCFLDLSPSTQVEKLSGWGNLTVSDQGAVKA**********************************************WALKDDLKKHVTTAELREMLEANGQ***GSELDLRDHCADGMMFGALGRCPICSGPLRYSGGIYRCRGYQSAWSKCSYSTREPERLKGKWKIPEETNSQYLVKWFKSQR*************************************************CVSCCLINESAETNCLVL****************MKVPIVREDYLV*********************************SAVHEASGMQDTGHILEDGKSVYNTTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGND*****K***CSKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKILPTGYCTSYSLSD********************PALVELMKMLFNVETYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNL*************LIIDASNRFFTVIPSIHPHVIRDEDDFKSKVKMLEALQDIEIASRLVG****SDDSLDEKYKKLCCDIAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPVPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK*
MANPPKPWKVE************KSNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRKANQIKSLDDVEGIESLRWEDQQKIRKYV**************TAAEYGIEVSQTSRATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFLDLSPSTQVEKLSGWGNLTVSDQGAVKALVNVPST**************************DLESKLEAQTKELWALKDDLKKHVTTAELREMLEAN********LDLRDHCADGMMFGALGRCPICSGPLRYSGGIYRCRGYQSAWS*************GKWKIPEETNSQYLVKWFKSQRTKKPIRVLP***********************NLGDLRVSFSRLPKESKCVSCCLINESAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKRQKKLPFDLYKVEVVGESSSMVTIKVKGRSAVHEASGMQDTGHILEDGKSVYNTTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSKLEECSKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKILPTGYCTSYSLSDYGVNKQVSEKIGTDADSQLAPALVELMKMLFNVETYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNNGAYDPSVKESLIIDASNRFFTVIPSIHPHVIRDEDDFKSKVKMLEALQDIEIASRLVGFDVDSDDSLDEKYKKLCCDIAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYM*******************ESDFVKWRDDVTVPCGKPVPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHKR
****PKPWKVEYAKSGRSSCRSCKSNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRKANQIKSLDDVEGIESLRWEDQQKIRKYVEEGVG********VTAAEYGIEVSQTSRATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFLDLSPSTQVEKLSGWGNLTVSDQGAVKALVNV***************************ASDLESKLEAQTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMMFGALGRCPICSGPLRYSGGIYRCRGYQSAWSKCSYSTREPERLKGKWKIPEETNSQYLVKWFKSQRTKKPIRVLP****************CQSSKSENLGDLRVSFSRLPKESKCVSCCLINESAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKRQKKLPFDLYKVEVVGESSSMVTIKVKGRSAVHEASGMQDTGHILEDGKSVYNTTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSKLEECSKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKILPTGYCTSYS******************DSQLAPALVELMKMLFNVETYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNNGAYDPSVKESLIIDASNRFFTVIPSIHPHVIRDEDDFKSKVKMLEALQDIEIASRLVGFDVDSDDSLDEKYKKLCCDIAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPVPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHKR
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MANPPKPWKVEYAKSGRSSCRSCKSNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRKANQIKSLDDVEGIESLRWEDQQKIRKYVEEGVGSGSSSKSNVTAAEYGIEVSQTSRATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFLDLSPSTQVEKLSGWGNLTVSDQGAVKALVNVPSTTKNGDVSTSRAASVASSNNLPDEHxxxxxxxxxxxxxxxxxxxxxLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMMFGALGRCPICSGPLRYSGGIYRCRGYQSAWSKCSYSTREPERLKGKWKIPEETNSQYLVKWFKSQRTKKPIRVLPPRTSNSPASSQASKSPCQSSKSENLGDLRVSFSRLPKESKCVSCCLINESAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKRQKKLPFDLYKVEVVGESSSMVTIKVKGRSAVHEASGMQDTGHILEDGKSVYNTTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSKLEECSKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKILPTGYCTSYSLSDYGVNKQVSEKIGTDADSQLAPALVELMKMLFNVETYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNNGAYDPSVKESLIIDASNRFFTVIPSIHPHVIRDEDDFKSKVKMLEALQDIEIASRLVGFDVDSDDSLDEKYKKLCCDIAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPVPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHKR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query954 2.2.26 [Sep-21-2011]
Q9ZP54983 Poly [ADP-ribose] polymer yes no 0.990 0.961 0.686 0.0
Q7EYV7977 Poly [ADP-ribose] polymer yes no 0.973 0.950 0.621 0.0
Q9ZSV1980 Poly [ADP-ribose] polymer N/A no 0.988 0.962 0.625 0.0
P098741014 Poly [ADP-ribose] polymer yes no 0.968 0.911 0.384 0.0
Q9R1521013 Poly [ADP-ribose] polymer yes no 0.965 0.909 0.387 0.0
P111031013 Poly [ADP-ribose] polymer yes no 0.963 0.907 0.375 0.0
P184931016 Poly [ADP-ribose] polymer yes no 0.965 0.906 0.378 0.0
P270081014 Poly [ADP-ribose] polymer yes no 0.964 0.907 0.376 1e-177
P264461011 Poly [ADP-ribose] polymer yes no 0.959 0.905 0.379 1e-176
P31669998 Poly [ADP-ribose] polymer N/A no 0.958 0.915 0.377 1e-172
>sp|Q9ZP54|PARP1_ARATH Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thaliana GN=PARP1 PE=1 SV=2 Back     alignment and function desciption
 Score = 1363 bits (3529), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 681/992 (68%), Positives = 795/992 (80%), Gaps = 47/992 (4%)

Query: 1   MANPPKPWKVEYAKSGRSSCRSCKSNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRKA 60
           MA+P KPW+ EYAKS RSSC++CKS I KE  RLGK+VQS+ FDG MPMWNHASC+L+K 
Sbjct: 1   MASPHKPWRAEYAKSSRSSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCILKKT 60

Query: 61  NQIKSLDDVEGIESLRWEDQQKIRKYVEEGVGSGSSSK--------SNVTAAEYGIEVSQ 112
            QIKS+DDVEGIESLRWEDQQKIRKYVE G GS +S+         +N    EYGIEVSQ
Sbjct: 61  KQIKSVDDVEGIESLRWEDQQKIRKYVESGAGSNTSTSTGTSTSSTANNAKLEYGIEVSQ 120

Query: 113 TSRATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFLDLSPSTQVEKLSGWGNLTV 172
           TSRA CR CS+KI+KGEVRI +KP+G G KGL WHHA CFL++S ST++E LSGW ++  
Sbjct: 121 TSRAGCRKCSEKILKGEVRIFSKPEGPGNKGLMWHHAKCFLEMSSSTELESLSGWRSIPD 180

Query: 173 SDQGAV-----KALVNVPSTTKNGDVSTSRAASVASSNNLPDEHAS------DL------ 215
           SDQ A+     KAL    + T     + SRA +   ++++ +E +       D+      
Sbjct: 181 SDQEALLPLVKKALPAAKTETAEARQTNSRAGTKRKNDSVDNEKSKLAKSSFDMSTSGAL 240

Query: 216 -----ESKLEAQTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMMF 270
                E ++EAQTKELW LKDDLKK+VT+AELREMLE N Q + GSELDLRD CADGMMF
Sbjct: 241 QPCSKEKEMEAQTKELWDLKDDLKKYVTSAELREMLEVNEQSTRGSELDLRDKCADGMMF 300

Query: 271 GALGRCPICSGPLRYSGGIYRCRGYQSAWSKCSYSTREPERLKGKWKIPEETNSQYLVKW 330
           G L  CP+CSG L +SGG+YRC GY S WSKCS+ST +P+R+KGKWKIP+ET +Q+L+KW
Sbjct: 301 GPLALCPMCSGHLSFSGGLYRCHGYISEWSKCSHSTLDPDRIKGKWKIPDETENQFLLKW 360

Query: 331 FKSQRTKKPIRVLPPRTSNSPASSQASKSPCQSSKSENLGDLRVSFSRLPKESKCVSCCL 390
            KSQ++ KP R+L P  S   +  Q SK    SS+SE L DL+VS +   KE +     +
Sbjct: 361 NKSQKSVKPKRILRPVLSGETSQGQGSKDATDSSRSERLADLKVSIAGNTKERQPWKKRI 420

Query: 391 INESAE--------TNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKRQKKLPFD 442
               AE        T+CLV+ G+ D  DAEMRKAR+MKV IVREDYLVDCFK+Q+KLPFD
Sbjct: 421 EEAGAEFHANVKKGTSCLVVCGLTDIRDAEMRKARRMKVAIVREDYLVDCFKKQRKLPFD 480

Query: 443 LYKVEVVGESSSMVTIKVKGRSAVHEASGMQDTGHILEDGKSVYNTTLNMSDLSTGVNSY 502
            YK+E   ES  +VT+KVKGRSAVHEASG+Q+  HILEDG S+YNTTL+MSDLSTG+NSY
Sbjct: 481 KYKIEDTSES--LVTVKVKGRSAVHEASGLQEHCHILEDGNSIYNTTLSMSDLSTGINSY 538

Query: 503 YILQIIQDDKGSDCYVFRKWGRVGNDKIGGSKLEECSKEDAVCEFKRLFLEKTGNPWEAW 562
           YILQIIQ+DKGSDCYVFRKWGRVGN+KIGG+K+EE SK DAV EFKRLFLEKTGN WE+W
Sbjct: 539 YILQIIQEDKGSDCYVFRKWGRVGNEKIGGNKVEEMSKSDAVHEFKRLFLEKTGNTWESW 598

Query: 563 EQKQNFQKKPGKILPTGYCTSYSLSDYGVNKQVSEKIGTDADSQLAPALVELMKMLFNVE 622
           EQK NFQK+PGK LP          DYGVNKQV++K      S LAP+L+ELMKMLF+VE
Sbjct: 599 EQKTNFQKQPGKFLPLDI-------DYGVNKQVAKKEPFQTSSNLAPSLIELMKMLFDVE 651

Query: 623 TYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNNGAYDPSVKESLIIDASNR 682
           TYR+AMMEF+INMSEMPLGKLSK+NIQKGFEALTEIQ LL      P++KESL++DASNR
Sbjct: 652 TYRSAMMEFEINMSEMPLGKLSKHNIQKGFEALTEIQRLLTESDPQPTMKESLLVDASNR 711

Query: 683 FFTVIPSIHPHVIRDEDDFKSKVKMLEALQDIEIASRLVGFDVDSDDSLDEKYKKLCCDI 742
           FFT+IPSIHPH+IRDEDDFKSKVKMLEALQDIEIASR+VGFDVDS +SLD+KYKKL CDI
Sbjct: 712 FFTMIPSIHPHIIRDEDDFKSKVKMLEALQDIEIASRIVGFDVDSTESLDDKYKKLHCDI 771

Query: 743 APLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLL 802
           +PLPHDSEDY+LIEKYL+ THAPTHT+WSLELEEVF+LEREGEFDK++ ++ KL N+MLL
Sbjct: 772 SPLPHDSEDYRLIEKYLNTTHAPTHTEWSLELEEVFALEREGEFDKYAPHREKLGNKMLL 831

Query: 803 WHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLML 862
           WHGSRLTNFVGIL+QGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYC+T KKNPVGLML
Sbjct: 832 WHGSRLTNFVGILNQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCYTCKKNPVGLML 891

Query: 863 LSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPVPSNV 922
           LSEV LGE++EL KAKYMDKPP GKHSTKGLGK VPQ+S+F KWR DVTVPCGKPV S V
Sbjct: 892 LSEVALGEIHELTKAKYMDKPPRGKHSTKGLGKKVPQDSEFAKWRGDVTVPCGKPVSSKV 951

Query: 923 RASELMYNEYIVYNTAQVKMQFLLKVRFHHKR 954
           +ASELMYNEYIVY+TAQVK+QFLLKVRF HKR
Sbjct: 952 KASELMYNEYIVYDTAQVKLQFLLKVRFKHKR 983
Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 3EC: 0
>sp|Q7EYV7|PARP1_ORYSJ Poly [ADP-ribose] polymerase 1 OS=Oryza sativa subsp. japonica GN=PARP1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZSV1|PARP1_MAIZE Poly [ADP-ribose] polymerase 1 OS=Zea mays GN=PARP1 PE=2 SV=1 Back     alignment and function description
>sp|P09874|PARP1_HUMAN Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=PARP1 PE=1 SV=4 Back     alignment and function description
>sp|Q9R152|PARP1_CRIGR Poly [ADP-ribose] polymerase 1 OS=Cricetulus griseus GN=PARP1 PE=2 SV=3 Back     alignment and function description
>sp|P11103|PARP1_MOUSE Poly [ADP-ribose] polymerase 1 OS=Mus musculus GN=Parp1 PE=1 SV=3 Back     alignment and function description
>sp|P18493|PARP1_BOVIN Poly [ADP-ribose] polymerase 1 OS=Bos taurus GN=PARP1 PE=2 SV=2 Back     alignment and function description
>sp|P27008|PARP1_RAT Poly [ADP-ribose] polymerase 1 OS=Rattus norvegicus GN=Parp1 PE=1 SV=4 Back     alignment and function description
>sp|P26446|PARP1_CHICK Poly [ADP-ribose] polymerase 1 OS=Gallus gallus GN=PARP1 PE=1 SV=2 Back     alignment and function description
>sp|P31669|PARP1_XENLA Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenopus laevis GN=parp1 PE=2 SV=1 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query954
TAIR|locus:2042511983 PARP1 "POLY(ADP-RIBOSE) POLYME 0.765 0.742 0.725 0.0
UNIPROTKB|F1MU081016 PARP1 "Poly [ADP-ribose] polym 0.513 0.482 0.469 6.4e-175
UNIPROTKB|P184931016 PARP1 "Poly [ADP-ribose] polym 0.513 0.482 0.467 7.2e-174
ZFIN|ZDB-GENE-030131-39551013 parp1 "poly (ADP-ribose) polym 0.513 0.483 0.447 5.3e-161
UNIPROTKB|F1P5K61009 PARP1 "Poly [ADP-ribose] polym 0.509 0.481 0.450 1.1e-155
UNIPROTKB|J9NXE3972 PARP1 "Uncharacterized protein 0.515 0.506 0.472 1.2e-153
UNIPROTKB|P098741014 PARP1 "Poly [ADP-ribose] polym 0.513 0.483 0.467 5e-153
UNIPROTKB|I3LDH31018 PARP1 "Uncharacterized protein 0.511 0.479 0.470 8.1e-153
RGD|20531014 Parp1 "poly (ADP-ribose) polym 0.515 0.485 0.476 8.3e-151
MGI|MGI:13408061013 Parp1 "poly (ADP-ribose) polym 0.516 0.486 0.468 1.7e-150
TAIR|locus:2042511 PARP1 "POLY(ADP-RIBOSE) POLYMERASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2825 (999.5 bits), Expect = 0., Sum P(2) = 0.
 Identities = 542/747 (72%), Positives = 621/747 (83%)

Query:   216 ESKLEAQTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMMFGALGR 275
             E ++EAQTKELW LKDDLKK+VT+AELREMLE N Q + GSELDLRD CADGMMFG L  
Sbjct:   246 EKEMEAQTKELWDLKDDLKKYVTSAELREMLEVNEQSTRGSELDLRDKCADGMMFGPLAL 305

Query:   276 CPICSGPLRYSGGIYRCRGYQSAWSKCSYSTREPERLKGKWKIPEETNSQYLVKWFKSQR 335
             CP+CSG L +SGG+YRC GY S WSKCS+ST +P+R+KGKWKIP+ET +Q+L+KW KSQ+
Sbjct:   306 CPMCSGHLSFSGGLYRCHGYISEWSKCSHSTLDPDRIKGKWKIPDETENQFLLKWNKSQK 365

Query:   336 TKKPIRVLPPRTXXXXXXXXXXXXXXXXXXXENLGDLRVSFSRLPKESKCVSCCLINESA 395
             + KP R+L P                     E L DL+VS +   KE +     +    A
Sbjct:   366 SVKPKRILRPVLSGETSQGQGSKDATDSSRSERLADLKVSIAGNTKERQPWKKRIEEAGA 425

Query:   396 E--------TNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKRQKKLPFDLYKVE 447
             E        T+CLV+ G+ D  DAEMRKAR+MKV IVREDYLVDCFK+Q+KLPFD YK+E
Sbjct:   426 EFHANVKKGTSCLVVCGLTDIRDAEMRKARRMKVAIVREDYLVDCFKKQRKLPFDKYKIE 485

Query:   448 VVGESSSMVTIKVKGRSAVHEASGMQDTGHILEDGKSVYNTTLNMSDLSTGVNSYYILQI 507
                ES  +VT+KVKGRSAVHEASG+Q+  HILEDG S+YNTTL+MSDLSTG+NSYYILQI
Sbjct:   486 DTSES--LVTVKVKGRSAVHEASGLQEHCHILEDGNSIYNTTLSMSDLSTGINSYYILQI 543

Query:   508 IQDDKGSDCYVFRKWGRVGNDKIGGSKLEECSKEDAVCEFKRLFLEKTGNPWEAWEQKQN 567
             IQ+DKGSDCYVFRKWGRVGN+KIGG+K+EE SK DAV EFKRLFLEKTGN WE+WEQK N
Sbjct:   544 IQEDKGSDCYVFRKWGRVGNEKIGGNKVEEMSKSDAVHEFKRLFLEKTGNTWESWEQKTN 603

Query:   568 FQKKPGKILPTGYCTSYSLSDYGVNKQVSEKIGTDADSQLAPALVELMKMLFNVETYRAA 627
             FQK+PGK LP          DYGVNKQV++K      S LAP+L+ELMKMLF+VETYR+A
Sbjct:   604 FQKQPGKFLPLDI-------DYGVNKQVAKKEPFQTSSNLAPSLIELMKMLFDVETYRSA 656

Query:   628 MMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNNGAYDPSVKESLIIDASNRFFTVI 687
             MMEF+INMSEMPLGKLSK+NIQKGFEALTEIQ LL      P++KESL++DASNRFFT+I
Sbjct:   657 MMEFEINMSEMPLGKLSKHNIQKGFEALTEIQRLLTESDPQPTMKESLLVDASNRFFTMI 716

Query:   688 PSIHPHVIRDEDDFKSKVKMLEALQDIEIASRLVGFDVDSDDSLDEKYKKLCCDIAPLPH 747
             PSIHPH+IRDEDDFKSKVKMLEALQDIEIASR+VGFDVDS +SLD+KYKKL CDI+PLPH
Sbjct:   717 PSIHPHIIRDEDDFKSKVKMLEALQDIEIASRIVGFDVDSTESLDDKYKKLHCDISPLPH 776

Query:   748 DSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSR 807
             DSEDY+LIEKYL+ THAPTHT+WSLELEEVF+LEREGEFDK++ ++ KL N+MLLWHGSR
Sbjct:   777 DSEDYRLIEKYLNTTHAPTHTEWSLELEEVFALEREGEFDKYAPHREKLGNKMLLWHGSR 836

Query:   808 LTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVG 867
             LTNFVGIL+QGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYC+T KKNPVGLMLLSEV 
Sbjct:   837 LTNFVGILNQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCYTCKKNPVGLMLLSEVA 896

Query:   868 LGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPVPSNVRASEL 927
             LGE++EL KAKYMDKPP GKHSTKGLGK VPQ+S+F KWR DVTVPCGKPV S V+ASEL
Sbjct:   897 LGEIHELTKAKYMDKPPRGKHSTKGLGKKVPQDSEFAKWRGDVTVPCGKPVSSKVKASEL 956

Query:   928 MYNEYIVYNTAQVKMQFLLKVRFHHKR 954
             MYNEYIVY+TAQVK+QFLLKVRF HKR
Sbjct:   957 MYNEYIVYDTAQVKLQFLLKVRFKHKR 983
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA;ISS;IDA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA;ISS
GO:0006471 "protein ADP-ribosylation" evidence=ISS;IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0006281 "DNA repair" evidence=IEP
GO:0006979 "response to oxidative stress" evidence=IEP
GO:0009737 "response to abscisic acid stimulus" evidence=IEP
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0006342 "chromatin silencing" evidence=RCA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0007067 "mitosis" evidence=RCA
GO:0007129 "synapsis" evidence=RCA
GO:0007131 "reciprocal meiotic recombination" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0009555 "pollen development" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0010212 "response to ionizing radiation" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0016444 "somatic cell DNA recombination" evidence=RCA
GO:0016568 "chromatin modification" evidence=RCA
GO:0016570 "histone modification" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
GO:0051726 "regulation of cell cycle" evidence=RCA
UNIPROTKB|F1MU08 PARP1 "Poly [ADP-ribose] polymerase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P18493 PARP1 "Poly [ADP-ribose] polymerase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3955 parp1 "poly (ADP-ribose) polymerase family, member 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P5K6 PARP1 "Poly [ADP-ribose] polymerase 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|J9NXE3 PARP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P09874 PARP1 "Poly [ADP-ribose] polymerase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LDH3 PARP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|2053 Parp1 "poly (ADP-ribose) polymerase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1340806 Parp1 "poly (ADP-ribose) polymerase family, member 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7EYV7PARP1_ORYSJ2, ., 4, ., 2, ., 3, 00.62170.97370.9508yesno
Q9ZSV1PARP1_MAIZE2, ., 4, ., 2, ., 3, 00.62560.98840.9622N/Ano
P18493PARP1_BOVIN2, ., 4, ., 2, ., 3, 00.37850.96540.9064yesno
Q9R152PARP1_CRIGR2, ., 4, ., 2, ., 3, 00.38790.96540.9091yesno
P27008PARP1_RAT2, ., 4, ., 2, ., 3, 00.37640.96430.9072yesno
Q9ZP54PARP1_ARATH2, ., 4, ., 2, ., 3, 00.68640.99050.9613yesno
P09874PARP1_HUMAN2, ., 4, ., 2, ., 3, 00.38420.96850.9112yesno
P26446PARP1_CHICK2, ., 4, ., 2, ., 3, 00.37910.95910.9050yesno
P11103PARP1_MOUSE2, ., 4, ., 2, ., 3, 00.37540.96330.9072yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.20.976
3rd Layer2.4.2.300.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00007500001
SubName- Full=Chromosome chr7 scaffold_192, whole genome shotgun sequence; (947 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00006013001
RecName- Full=DNA polymerase; EC=2.7.7.7; (1126 aa)
   •  • 0.571
GSVIVG00019509001
RecName- Full=DNA polymerase; EC=2.7.7.7; (1495 aa)
   •• • 0.455
GSVIVG00024178001
RecName- Full=Proliferating cell nuclear antigen;; This protein is an auxiliary protein of DNA [...] (266 aa)
   •• • 0.415

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query954
PLN03123981 PLN03123, PLN03123, poly [ADP-ribose] polymerase; 0.0
cd01437347 cd01437, parp_like, Poly(ADP-ribose) polymerase (p 1e-174
PLN03122815 PLN03122, PLN03122, Poly [ADP-ribose] polymerase; 1e-151
PLN03124643 PLN03124, PLN03124, poly [ADP-ribose] polymerase; 1e-142
pfam00644206 pfam00644, PARP, Poly(ADP-ribose) polymerase catal 2e-99
pfam02877130 pfam02877, PARP_reg, Poly(ADP-ribose) polymerase, 1e-46
cd08001104 cd08001, WGR_PARP1_like, WGR domain of poly(ADP-ri 7e-42
pfam0064581 pfam00645, zf-PARP, Poly(ADP-ribose) polymerase an 2e-31
smart0077384 smart00773, WGR, Proposed nucleic acid binding dom 1e-23
cd07997102 cd07997, WGR_PARP, WGR domain of poly(ADP-ribose) 2e-23
cd08003103 cd08003, WGR_PARP2_like, WGR domain of poly(ADP-ri 4e-21
pfam0806355 pfam08063, PADR1, PADR1 (NUC008) domain 8e-21
pfam0540683 pfam05406, WGR, WGR domain 1e-18
cd08002100 cd08002, WGR_PARP3_like, WGR domain of poly(ADP-ri 3e-16
pfam0064581 pfam00645, zf-PARP, Poly(ADP-ribose) polymerase an 1e-14
cd01341137 cd01341, ADP_ribosyl, ADP_ribosylating enzymes cat 1e-13
cd0799473 cd07994, WGR, WGR domain 3e-07
cd01438223 cd01438, tankyrase_like, Tankyrases interact with 2e-05
cd01439121 cd01439, TCCD_inducible_PARP_like, Poly(ADP-ribose 3e-04
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information 
 Score = 1730 bits (4483), Expect = 0.0
 Identities = 733/989 (74%), Positives = 822/989 (83%), Gaps = 43/989 (4%)

Query: 1   MANPPKPWKVEYAKSGRSSCRSCKSNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRKA 60
           MA PPKPWK EYAKS RSSC++CKS I+K+ LRLGKMVQS+QFDGFMPMWNHASC+L+K 
Sbjct: 1   MAAPPKPWKAEYAKSSRSSCKTCKSPIDKDELRLGKMVQSTQFDGFMPMWNHASCILKKK 60

Query: 61  NQIKSLDDVEGIESLRWEDQQKIRKYVEEGVGSGSSSKSNVTAA-EYGIEVSQTSRATCR 119
           NQIKS+DDVEGI+SLRWEDQQKIRKYVE G     ++     ++ EYGIEV++TSRATCR
Sbjct: 61  NQIKSIDDVEGIDSLRWEDQQKIRKYVESGGTGTGTASDAAASSFEYGIEVAKTSRATCR 120

Query: 120 HCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFLDLSPSTQVEKLSGWGNLTVSDQGAVK 179
            CS+KI+KGEVRIS+KP+GQG KGLAWHHA CFL++SPST VEKLSGW  L+ SDQ AV 
Sbjct: 121 RCSEKILKGEVRISSKPEGQGYKGLAWHHAKCFLEMSPSTPVEKLSGWDTLSDSDQEAVL 180

Query: 180 ALVN-VPSTTKNGDVSTSRAAS------------------------VASSNNLPDEHASD 214
            LV   PS  K       +  S                        V++S     + +SD
Sbjct: 181 PLVKKSPSEAKEEKAEERKQESKKGAKRKKDASGDDKSKKAKTDRDVSTSTAASQKKSSD 240

Query: 215 LESKLEAQTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMMFGALG 274
           LESKLEAQ+KELW+LKDDLKKHV+TAELREMLEANGQD++GSELDLRD CADGMMFGALG
Sbjct: 241 LESKLEAQSKELWSLKDDLKKHVSTAELREMLEANGQDTSGSELDLRDRCADGMMFGALG 300

Query: 275 RCPICSGPLRYSGGIYRCRGYQSAWSKCSYSTREPERLKGKWKIPEETNSQYLVKWFKSQ 334
            CP+CSGPL YSGG+YRC+GY S WSKCSYST EPER+K KWKIP+ET++QYL KWFKSQ
Sbjct: 301 PCPLCSGPLLYSGGMYRCQGYLSEWSKCSYSTLEPERIKKKWKIPDETDNQYLRKWFKSQ 360

Query: 335 RTKKPIRVLPPRTSNSPASSQASKSPCQSSKSENLGDLRVSFSRLPKESKCVSCCLINES 394
           ++KKP R+LPP +SN  +  QA  S    S+SE LGDL+VS     KE        I E+
Sbjct: 361 KSKKPERLLPPSSSNESSGKQAQ-SNSSDSESEFLGDLKVSIVGASKEKVTEWKAKIEEA 419

Query: 395 A---------ETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKRQKKLPFDLYK 445
                     +TNCLV+ G  DD DAEMRKAR+MK+PIVREDYLVDCFK++KKLPFD YK
Sbjct: 420 GGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLVDCFKKKKKLPFDKYK 479

Query: 446 VEVVGESSSMVTIKVKGRSAVHEASGMQDTGHILEDGKSVYNTTLNMSDLSTGVNSYYIL 505
           +E  G SSSMVT+KVKGRSAVHEASG+QDTGHILEDGKS+YNTTLNMSDLSTGVNSYYIL
Sbjct: 480 LEASGTSSSMVTVKVKGRSAVHEASGLQDTGHILEDGKSIYNTTLNMSDLSTGVNSYYIL 539

Query: 506 QIIQDDKGSDCYVFRKWGRVGNDKIGGSKLEECSKEDAVCEFKRLFLEKTGNPWEAWEQK 565
           QII++DKGSDCYVFRKWGRVGN+KIGG+KLEE SK DA+ EFKRLFLEKTGNPWE+WEQK
Sbjct: 540 QIIEEDKGSDCYVFRKWGRVGNEKIGGNKLEEMSKSDAIHEFKRLFLEKTGNPWESWEQK 599

Query: 566 QNFQKKPGKILPTGYCTSYSLSDYGVNKQVSEKIGTDADSQLAPALVELMKMLFNVETYR 625
            NFQK+PGK  P          DYGVN+Q  +K  + + S LAP LVELMKMLF+VETYR
Sbjct: 600 TNFQKQPGKFYPLDI-------DYGVNEQPKKKAASGSKSNLAPRLVELMKMLFDVETYR 652

Query: 626 AAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNNGAYDPSVKESLIIDASNRFFT 685
           AAMMEF+INMSEMPLGKLSK NIQKGFEALTEIQNLL     DPS++ESL++DASNRFFT
Sbjct: 653 AAMMEFEINMSEMPLGKLSKANIQKGFEALTEIQNLLKENDQDPSIRESLLVDASNRFFT 712

Query: 686 VIPSIHPHVIRDEDDFKSKVKMLEALQDIEIASRLVGFDVDSDDSLDEKYKKLCCDIAPL 745
           +IPSIHPH+IRDEDD KSKVKMLEALQDIEIASRLVGFDVD DDSLD+KYKKL CDI+PL
Sbjct: 713 LIPSIHPHIIRDEDDLKSKVKMLEALQDIEIASRLVGFDVDEDDSLDDKYKKLHCDISPL 772

Query: 746 PHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHG 805
           PHDSEDY+LIEKYL  THAPTHTDWSLELEEVFSLEREGEFDK++ Y+ KLKNRMLLWHG
Sbjct: 773 PHDSEDYKLIEKYLLTTHAPTHTDWSLELEEVFSLEREGEFDKYAPYKEKLKNRMLLWHG 832

Query: 806 SRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSE 865
           SRLTNFVGILSQGLRIAPPEAPATGYMFGKG+YFADLVSKSAQYC+TD+KNPVGLMLLSE
Sbjct: 833 SRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCYTDRKNPVGLMLLSE 892

Query: 866 VGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPVPSNVRAS 925
           V LGE+YELKKAKYMDKPP GKHSTKGLGKTVPQES+FVKWRDDV VPCGKPVPS V+AS
Sbjct: 893 VALGEIYELKKAKYMDKPPRGKHSTKGLGKTVPQESEFVKWRDDVVVPCGKPVPSKVKAS 952

Query: 926 ELMYNEYIVYNTAQVKMQFLLKVRFHHKR 954
           ELMYNEYIVYNTAQVK+QFLLKVRF HKR
Sbjct: 953 ELMYNEYIVYNTAQVKLQFLLKVRFKHKR 981

Length = 981
>gnl|CDD|238717 cd01437, parp_like, Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information
>gnl|CDD|178669 PLN03122, PLN03122, Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>gnl|CDD|215591 PLN03124, PLN03124, poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>gnl|CDD|216040 pfam00644, PARP, Poly(ADP-ribose) polymerase catalytic domain Back     alignment and domain information
>gnl|CDD|190460 pfam02877, PARP_reg, Poly(ADP-ribose) polymerase, regulatory domain Back     alignment and domain information
>gnl|CDD|153428 cd08001, WGR_PARP1_like, WGR domain of poly(ADP-ribose) polymerase 1 and similar proteins Back     alignment and domain information
>gnl|CDD|189650 pfam00645, zf-PARP, Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region Back     alignment and domain information
>gnl|CDD|214814 smart00773, WGR, Proposed nucleic acid binding domain Back     alignment and domain information
>gnl|CDD|153426 cd07997, WGR_PARP, WGR domain of poly(ADP-ribose) polymerases Back     alignment and domain information
>gnl|CDD|153430 cd08003, WGR_PARP2_like, WGR domain of poly(ADP-ribose) polymerases Back     alignment and domain information
>gnl|CDD|191934 pfam08063, PADR1, PADR1 (NUC008) domain Back     alignment and domain information
>gnl|CDD|218579 pfam05406, WGR, WGR domain Back     alignment and domain information
>gnl|CDD|153429 cd08002, WGR_PARP3_like, WGR domain of poly(ADP-ribose) polymerase 3 and similar proteins Back     alignment and domain information
>gnl|CDD|189650 pfam00645, zf-PARP, Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region Back     alignment and domain information
>gnl|CDD|238651 cd01341, ADP_ribosyl, ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates Back     alignment and domain information
>gnl|CDD|153424 cd07994, WGR, WGR domain Back     alignment and domain information
>gnl|CDD|238718 cd01438, tankyrase_like, Tankyrases interact with the telomere reverse transcriptase complex (TERT) Back     alignment and domain information
>gnl|CDD|238719 cd01439, TCCD_inducible_PARP_like, Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 954
PLN03123981 poly [ADP-ribose] polymerase; Provisional 100.0
PLN03122815 Poly [ADP-ribose] polymerase; Provisional 100.0
PLN03124643 poly [ADP-ribose] polymerase; Provisional 100.0
cd01437347 parp_like Poly(ADP-ribose) polymerase (parp) catal 100.0
KOG1037531 consensus NAD+ ADP-ribosyltransferase Parp, requir 100.0
PF00644206 PARP: Poly(ADP-ribose) polymerase catalytic domain 100.0
cd01438223 tankyrase_like Tankyrases interact with the telome 100.0
PF02877133 PARP_reg: Poly(ADP-ribose) polymerase, regulatory 99.98
cd08003103 WGR_PARP2_like WGR domain of poly(ADP-ribose) poly 99.97
cd08001104 WGR_PARP1_like WGR domain of poly(ADP-ribose) poly 99.95
cd08002100 WGR_PARP3_like WGR domain of poly(ADP-ribose) poly 99.94
cd07997102 WGR_PARP WGR domain of poly(ADP-ribose) polymerase 99.92
cd01439121 TCCD_inducible_PARP_like Poly(ADP-ribose) polymera 99.91
cd01341137 ADP_ribosyl ADP_ribosylating enzymes catalyze the 99.9
PF0064582 zf-PARP: Poly(ADP-ribose) polymerase and DNA-Ligas 99.88
PF0806355 PADR1: PADR1 (NUC008) domain; InterPro: IPR012982 99.85
smart0077384 WGR Proposed nucleic acid binding domain. This dom 99.71
PF0064582 zf-PARP: Poly(ADP-ribose) polymerase and DNA-Ligas 99.65
PF0540681 WGR: WGR domain; InterPro: IPR008893 This domain i 99.65
PLN03123981 poly [ADP-ribose] polymerase; Provisional 99.63
cd0799473 WGR WGR domain. The WGR domain is found in a varie 99.59
cd0799674 WGR_MMR_like WGR domain of molybdate metabolism re 99.15
KOG1037531 consensus NAD+ ADP-ribosyltransferase Parp, requir 99.13
KOG4437482 consensus ATP-dependent DNA ligase III [Replicatio 99.09
KOG4437482 consensus ATP-dependent DNA ligase III [Replicatio 98.54
PF0053378 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP 98.07
COG383185 Uncharacterized conserved protein [Function unknow 98.06
smart0029280 BRCT breast cancer carboxy-terminal domain. 97.99
cd0002772 BRCT Breast Cancer Suppressor Protein (BRCA1), car 97.96
PF1273863 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W 97.45
cd0799877 WGR_DNA_ligase WGR domain of bacterial DNA ligases 97.25
KOG3226508 consensus DNA repair protein [Replication, recombi 96.42
PRK06063313 DNA polymerase III subunit epsilon; Provisional 96.05
PRK06195309 DNA polymerase III subunit epsilon; Validated 95.08
PRK14350669 ligA NAD-dependent DNA ligase LigA; Provisional 95.0
PRK07956665 ligA NAD-dependent DNA ligase LigA; Validated 94.06
COG0272667 Lig NAD-dependent DNA ligase (contains BRCT domain 92.92
PRK14351689 ligA NAD-dependent DNA ligase LigA; Provisional 92.9
TIGR00575652 dnlj DNA ligase, NAD-dependent. The member of this 92.12
PF0203735 SAP: SAP domain; InterPro: IPR003034 The SAP (afte 82.44
smart0051335 SAP Putative DNA-binding (bihelical) motif predict 81.21
>PLN03123 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.6e-236  Score=2127.90  Aligned_cols=945  Identities=77%  Similarity=1.239  Sum_probs=858.4

Q ss_pred             CCCCCCCcEEEEcccCCcccccccccccCCCeEEEEEeeccccCCCCceeeecccccccccCCCCCCccCCccCCCHHHH
Q 035625            1 MANPPKPWKVEYAKSGRSSCRSCKSNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRKANQIKSLDDVEGIESLRWEDQ   80 (954)
Q Consensus         1 m~~~~~~~~vEYAkS~Ra~Ck~C~~~I~kg~LRig~~~~~~~~dg~~~~W~H~~Cf~~~~~~~~~~~~i~G~~~L~~eDq   80 (954)
                      ||+++.+|.|||||||||+||+|+++|+||+||||++|++++|||.++.|||++||++....+.++++|+||++|+|+||
T Consensus         1 ~~~~~~~~~~EYAkS~Rs~Ck~C~~~I~K~~lRi~~~v~~~~~dg~~~~W~H~~Cf~~~~~~~~~~~~l~G~~~L~~eDq   80 (981)
T PLN03123          1 MAAPPKPWKAEYAKSSRSSCKTCKSPIDKDELRLGKMVQSTQFDGFMPMWNHASCILKKKNQIKSIDDVEGIDSLRWEDQ   80 (981)
T ss_pred             CCCCCCCeeEEEecCCCccccccCCcccCCCeEEEEeecccccCCCCCeeeccccccccccCCCChhhcCChhhCCHHHH
Confidence            89999999999999999999999999999999999999999999999999999999998766678899999999999999


Q ss_pred             HHHHHHHHhcCCCCCC-CCccccccccceeecccchhhhhhhcccccccceeecccCCCCCCCCccccccccccccCCCc
Q 035625           81 QKIRKYVEEGVGSGSS-SKSNVTAAEYGIEVSQTSRATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFLDLSPST  159 (954)
Q Consensus        81 ~~i~~~i~~~~~~~~~-~~~~~~~~~~~vEyAks~Rs~Ck~C~~kI~Kge~Ri~~k~~~~~~~~~~w~H~~Cf~~~~~~~  159 (954)
                      ++|+++++.++..... +....++.+|.||||+||||+|++|+++|.||+|||++..+.++.....|||+.||++..++.
T Consensus        81 ~~i~~~i~~~~~~~~~~~~~~~~~~~~~vEyAkS~Ra~Ck~C~~kI~KgelRig~~v~~~~g~~~~W~H~~Cf~~~~~~~  160 (981)
T PLN03123         81 QKIRKYVESGGTGTGTASDAAASSFEYGIEVAKTSRATCRRCSEKILKGEVRISSKPEGQGYKGLAWHHAKCFLEMSPST  160 (981)
T ss_pred             HHHHHHHhccCCCCCcccccccCCcceEEEEecCCCCccccCCceecCCceEEEeeecCCCCCcccccccccccccCCCC
Confidence            9999999988865432 455667789999999999999999999999999999998766655567899999999988888


Q ss_pred             cccccCCCCCCCHhhHHHHHHhcC----CCCCC---------CCCCCCcccccc---cccCC---C-------CCCCcch
Q 035625          160 QVEKLSGWGNLTVSDQGAVKALVN----VPSTT---------KNGDVSTSRAAS---VASSN---N-------LPDEHAS  213 (954)
Q Consensus       160 ~~e~l~G~~~L~~~dq~~v~~~~~----~~~~~---------~k~~k~~~k~~~---~~k~~---~-------~~~~~~~  213 (954)
                      ++++|+||+.|+++||+.|++++.    +.++.         .++.++. ++.+   ..+.+   .       .+.++++
T Consensus       161 ~~e~l~Gf~~L~~eDqe~v~~li~~~~~~~k~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (981)
T PLN03123        161 PVEKLSGWDTLSDSDQEAVLPLVKKSPSEAKEEKAEERKQESKKGAKRK-KDASGDDKSKKAKTDRDVSTSTAASQKKSS  239 (981)
T ss_pred             ChhhCCChhhCCHHHHHHHHHHHhhcCCccccccccccccccccccccc-ccccccccccccchhhhhhhhhhhccccch
Confidence            899999999999999999999994    21110         1111111 1111   00100   0       1122344


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCCChhHHHHHhhhhhhcCCCCCCCCCCCcEEEeCceEEEe
Q 035625          214 DLESKLEAQTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMMFGALGRCPICSGPLRYSGGIYRCR  293 (954)
Q Consensus       214 ~~~~~lk~Q~~~~w~~~d~l~~~~~~~~l~~lL~~N~q~~~~~~~~ll~~~aD~~~fG~l~~Cp~C~g~l~~~~~~Y~C~  293 (954)
                      +++++|++|+++||++||+|+++|+.++|++||++|+|.++|+++.||+||||||+||||++||.|+|+|+|++++|+|+
T Consensus       240 ~~~~kLk~Qs~~lw~~~d~L~~~~s~~~L~~iL~~N~q~~~g~~~~ll~r~AD~m~FGal~~CP~C~g~l~~~~~~Y~C~  319 (981)
T PLN03123        240 DLESKLEAQSKELWSLKDDLKKHVSTAELREMLEANGQDTSGSELDLRDRCADGMMFGALGPCPLCSGPLLYSGGMYRCQ  319 (981)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHhCCCCCCCCCCCeeEEcCCceEEC
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCccccccccCCccccCCccccCcccchhhhHHHHhhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcE
Q 035625          294 GYQSAWSKCSYSTREPERLKGKWKIPEETNSQYLVKWFKSQRTKKPIRVLPPRTSNSPASSQASKSPCQSSKSENLGDLR  373 (954)
Q Consensus       294 G~~sewtkC~~~t~~p~R~~~~~kiP~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~  373 (954)
                      ||||||++|+|+|++|+|++++|+||+++++.||.+|+|+|+.++++|+||++++...+..+..+. ...+..+||+||+
T Consensus       320 G~~sewtkC~~~t~~P~R~~~~~kip~~~~~~~l~~~~k~~k~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~  398 (981)
T PLN03123        320 GYLSEWSKCSYSTLEPERIKKKWKIPDETDNQYLRKWFKSQKSKKPERLLPPSSSNESSGKQAQSN-SSDSESEFLGDLK  398 (981)
T ss_pred             cccCCcCccccccCCCCccCCCccCCHHHHHHHHHHHHHhccCCCcccccCCCCcccccccccccc-cccccCCCcCCeE
Confidence            999999999999999999656999999999999999999999999999999866555444333322 2257889999999


Q ss_pred             EEEEeCCCcchhHHHHHhhh---------cCCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHHhhcCCCCCCCcc
Q 035625          374 VSFSRLPKESKCVSCCLINE---------SAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKRQKKLPFDLY  444 (954)
Q Consensus       374 i~i~G~~~~~~~~~k~~I~~---------~~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~~~~~~~~~~y  444 (954)
                      |+++|+|+.++.+||+.|+.         +.+|||||+|++..+++.+|++|++++||||++|||+||+.+++++|...|
T Consensus       399 i~i~G~~~~~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ds~~~~~~~p~~~y  478 (981)
T PLN03123        399 VSIVGASKEKVTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLVDCFKKKKKLPFDKY  478 (981)
T ss_pred             EEEecCCCCcHHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHHHHHhccccCcchhh
Confidence            99999999999999999999         456899999973335678999999999999999999999999999999999


Q ss_pred             cccccCCCCcceeeeecCCcccCCCCCCCCccEEeecCCeeEEEEEEeecCCCCCccEEEEEEEEcCCCCcEEEEEEeee
Q 035625          445 KVEVVGESSSMVTIKVKGRSAVHEASGMQDTGHILEDGKSVYNTTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGR  524 (954)
Q Consensus       445 ~l~~~~~~~~~~~~~~kg~~~Vd~~s~l~~~~hV~~d~~~~Y~~~L~~tdi~~~~N~fY~lQll~~~~~~~y~v~~~WGR  524 (954)
                      .+......++.++++++|+++||+++++++.+|||+|+|.+|+|+||+||+++|+|+||+||||+++.++.|+||+||||
T Consensus       479 ~~~~~~~~~~~~~~~~kg~~~Vd~~~~~~~~~hVyed~g~iY~~~Ln~td~~~n~NkfY~iQLL~~~~~~~y~v~~rWGR  558 (981)
T PLN03123        479 KLEASGTSSSMVTVKVKGRSAVHEASGLQDTGHILEDGKSIYNTTLNMSDLSTGVNSYYILQIIEEDKGSDCYVFRKWGR  558 (981)
T ss_pred             hhcccccccccccccccCCccCCcccccccCceEEecCCeEeeeeEecccccCCCcceEEEEEEEeCCCCeEEEEEEecc
Confidence            88655444566788999999999999999999999999999999999999999999999999999998899999999999


Q ss_pred             cccccCCCccccCCCHHHHHHHHHHHHHHHhCCCccchhhcccCccCCCcceeccccCCCcccccccccccccccCCCCC
Q 035625          525 VGNDKIGGSKLEECSKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKILPTGYCTSYSLSDYGVNKQVSEKIGTDAD  604 (954)
Q Consensus       525 VG~~~~G~~kl~~~s~e~Ai~~F~k~F~eKTGn~W~~~~~r~~f~k~pgKy~~ve~~~~~s~~d~~~~~~~~~~~~~~~~  604 (954)
                      ||++.+|+++++++++++|+.+|+++|++||||+|+.|++|.+|+|+||||+|||       +||+.++....+....++
T Consensus       559 VG~~~ig~~~l~~~~~~~A~~~F~kkF~eKTgn~W~~~~~r~~F~k~pgKy~~ie-------~dy~~~~~~~~~~~~~~~  631 (981)
T PLN03123        559 VGNEKIGGNKLEEMSKSDAIHEFKRLFLEKTGNPWESWEQKTNFQKQPGKFYPLD-------IDYGVNEQPKKKAASGSK  631 (981)
T ss_pred             cCCcccCccccCCCCHHHHHHHHHHHHHHHhcCcccchhhcccccccCCceeEEE-------eecCcccchhhhcccCCc
Confidence            9986569999999999999999999999999999999999999999999999999       999877654433346678


Q ss_pred             CCCcHHHHHHHHHHcCHHHHHHHHHHhccCcCCCCccCCCHHHHHHHHHHHHHHHHHHhCCCCCCchhhhHHHHhhcccc
Q 035625          605 SQLAPALVELMKMLFNVETYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNNGAYDPSVKESLIIDASNRFF  684 (954)
Q Consensus       605 s~L~~~Vq~l~~~Ifd~~~~~~~m~~~~~d~~kmPLGkLSk~qI~~a~~vL~ei~~~l~~~~~~~~~~~~~l~~lsn~fY  684 (954)
                      |+|+++||+||++|||+++|+++|++|+||+.+||||+||++||++||+||++|+++|++...+++..+..|.+||||||
T Consensus       632 skL~~~vq~L~klIfd~~~m~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~ei~~~l~~~~~~~~~~~~~l~~lSn~fY  711 (981)
T PLN03123        632 SNLAPRLVELMKMLFDVETYRAAMMEFEINMSEMPLGKLSKANIQKGFEALTEIQNLLKENDQDPSIRESLLVDASNRFF  711 (981)
T ss_pred             CCCCHHHHHHHHHHhCHHHHHHHHHHccCCcccCCCccccHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhccE
Confidence            99999999999999999999999999999999999999999999999999999999998766554445678999999999


Q ss_pred             ccccCCCCCCCCCHHHHHHHHHHHHHHHhHHHHHHhcCCCCCCCCchHHHHhhcCCEEEECCCCCHHHHHHHHHHHhcCC
Q 035625          685 TVIPSIHPHVIRDEDDFKSKVKMLEALQDIEIASRLVGFDVDSDDSLDEKYKKLCCDIAPLPHDSEDYQLIEKYLHATHA  764 (954)
Q Consensus       685 tlIPh~~p~~i~~~~~l~~k~~lle~L~die~A~~ll~~~~~~~~pld~~Y~~L~~~i~~L~~~s~Ey~~I~~y~~~t~~  764 (954)
                      |+|||++||+|++.++|++|++|||+|.|||+|++|++.+.+..||||.+|++|+|+|+||+++|+||++|++|+.+||+
T Consensus       712 tlIPh~~pp~I~~~~~ik~k~~lLe~L~dieiA~~ll~~~~~~~~pld~~Y~~L~~~i~~L~~~s~ey~~I~~Yl~nT~~  791 (981)
T PLN03123        712 TLIPSIHPHIIRDEDDLKSKVKMLEALQDIEIASRLVGFDVDEDDSLDDKYKKLHCDISPLPHDSEDYKLIEKYLLTTHA  791 (981)
T ss_pred             ecCCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchHHHHHhcCCeEEECCCCCHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999997655668999999999999999999999999999999999999


Q ss_pred             CCCCCCccccCceeeeecccccchhhHHHhhcCCcceeEecCCCCChhhhhccCCCCCCCCCCCcceeeeeeeecccccc
Q 035625          765 PTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVS  844 (954)
Q Consensus       765 ~~h~~~~~~I~~If~V~r~~e~~rf~~~k~~~~N~~lLwHGSr~~N~~gILs~Glriap~~ap~tGymFGkGIYFAd~~s  844 (954)
                      +||..|+++|++||+|+|.+|.+||.+|+..++||+|||||||.+||+|||++|||||||+||++|||||+|||||||+|
T Consensus       792 ~th~~y~l~v~~IF~v~r~gE~~rf~~~~~~~~Nr~LLwHGSr~~N~~gILs~GLriaPpeap~tGymfGkGIYFAD~~S  871 (981)
T PLN03123        792 PTHTDWSLELEEVFSLEREGEFDKYAPYKEKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVS  871 (981)
T ss_pred             CccccccceeeEEEEecccccccchhhHhhcCCCceEEEcCCCcccHHHHhhccCccCCccccccCccccceeEecchhh
Confidence            99999999999999999999999999985579999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCCCceEEEEEEEeeCceeeeccccCCCCCCCCCCCccccCCccCCCCCceeecCCeEecCCCcccCCCCC
Q 035625          845 KSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPVPSNVRA  924 (954)
Q Consensus       845 KSa~Yc~~~~~~~~~~mlLceVaLG~~~~~~~~~~~~~~p~g~~Sv~g~G~~~P~p~~~~~~~dgv~vp~G~~~~~~~~~  924 (954)
                      |||+||+++.++++|+|||||||||++++++.++++++||+|+|||+|+|++.|+|+++++|.|||+||+|+++++...+
T Consensus       872 KSanYc~~~~~~~~g~llLceVaLG~~~e~~~~~~~~~~p~g~~S~~g~G~~~Pd~~~~~~~~dgv~vP~Gk~~~~~~~~  951 (981)
T PLN03123        872 KSAQYCYTDRKNPVGLMLLSEVALGEIYELKKAKYMDKPPRGKHSTKGLGKTVPQESEFVKWRDDVVVPCGKPVPSKVKA  951 (981)
T ss_pred             hhhhhhcccCCCCceEEEEEEEecCChhhhccccccccCCCCceeeeecCCCCCCcccceecCCceEeeCCCCccCcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             CCCCCCEEEEeeCCccceeeEEEEEeeecC
Q 035625          925 SELMYNEYIVYNTAQVKMQFLLKVRFHHKR  954 (954)
Q Consensus       925 ~~l~ynEyIVYd~~Qv~~~YLi~~~~~~~~  954 (954)
                      ++|.||||||||++||+|||||+|+|+|+|
T Consensus       952 ~~L~yNEYIVYd~~Qvr~rYLv~vkf~~~~  981 (981)
T PLN03123        952 SELMYNEYIVYNTAQVKLQFLLKVRFKHKR  981 (981)
T ss_pred             CccccCceEEechhHEEEEEEEEEEeeccC
Confidence            999999999999999999999999999987

>PLN03122 Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>PLN03124 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information
>KOG1037 consensus NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins [Transcription; Replication, recombination and repair; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself Back     alignment and domain information
>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT) Back     alignment and domain information
>PF02877 PARP_reg: Poly(ADP-ribose) polymerase, regulatory domain; InterPro: IPR004102 Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information
>cd08003 WGR_PARP2_like WGR domain of poly(ADP-ribose) polymerases Back     alignment and domain information
>cd08001 WGR_PARP1_like WGR domain of poly(ADP-ribose) polymerase 1 and similar proteins Back     alignment and domain information
>cd08002 WGR_PARP3_like WGR domain of poly(ADP-ribose) polymerase 3 and similar proteins Back     alignment and domain information
>cd07997 WGR_PARP WGR domain of poly(ADP-ribose) polymerases Back     alignment and domain information
>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information
>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates Back     alignment and domain information
>PF00645 zf-PARP: Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region; InterPro: IPR001510 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF08063 PADR1: PADR1 (NUC008) domain; InterPro: IPR012982 This domain is found in poly(ADP-ribose)-synthetases [] Back     alignment and domain information
>smart00773 WGR Proposed nucleic acid binding domain Back     alignment and domain information
>PF00645 zf-PARP: Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region; InterPro: IPR001510 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF05406 WGR: WGR domain; InterPro: IPR008893 This domain is named after the most conserved central motif of the domain Back     alignment and domain information
>PLN03123 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>cd07994 WGR WGR domain Back     alignment and domain information
>cd07996 WGR_MMR_like WGR domain of molybdate metabolism regulator and related proteins Back     alignment and domain information
>KOG1037 consensus NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins [Transcription; Replication, recombination and repair; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4437 consensus ATP-dependent DNA ligase III [Replication, recombination and repair] Back     alignment and domain information
>KOG4437 consensus ATP-dependent DNA ligase III [Replication, recombination and repair] Back     alignment and domain information
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1 Back     alignment and domain information
>COG3831 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00292 BRCT breast cancer carboxy-terminal domain Back     alignment and domain information
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain Back     alignment and domain information
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A Back     alignment and domain information
>cd07998 WGR_DNA_ligase WGR domain of bacterial DNA ligases Back     alignment and domain information
>KOG3226 consensus DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated Back     alignment and domain information
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>TIGR00575 dnlj DNA ligase, NAD-dependent Back     alignment and domain information
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis [] Back     alignment and domain information
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query954
4dqy_C506 Structure Of Human Parp-1 Bound To A Dna Double Str 1e-125
1uk0_A350 Crystal Structure Of Catalytic Domain Of Human Poly 2e-96
2rd6_A350 Parp Complexed With A861695 Length = 350 6e-96
1a26_A361 The Catalytic Fragment Of Poly(Adp-Ribose) Polymera 8e-93
1efy_A350 Crystal Structure Of The Catalytic Fragment Of Poly 9e-93
1gs0_A351 Crystal Structure Of The Catalytic Fragment Of Muri 6e-81
3kcz_A368 Human Poly(Adp-Ribose) Polymerase 2, Catalytic Frag 1e-77
3c49_A357 Human Poly(Adp-Ribose) Polymerase 3, Catalytic Frag 1e-35
1v9x_A114 Solution Structure Of The First Zn-Finger Domain Of 3e-27
2cr9_A139 Solution Structure Of Wgr Domain Of Poly(Adp-Ribose 3e-23
4av1_A223 Crystal Structure Of The Human Parp-1 Dna Binding D 1e-20
2riq_A160 Crystal Structure Of The Third Zinc-Binding Domain 6e-20
2jvn_A126 Domain C Of Human Parp-1 Length = 126 2e-18
2dmj_A106 Solution Structure Of The First Zf-Parp Domain Of H 3e-11
3oda_A116 Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna Lengt 4e-11
2l30_A108 Human Parp-1 Zinc Finger 1 Length = 108 5e-11
3od8_A116 Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna Lengt 5e-10
2eoc_A124 Solution Structure Of The Wgr Domain From Human Pol 6e-06
3odc_A111 Human Parp-1 Zinc Finger 2 (Zn2) Bound To Dna Lengt 2e-05
2l31_A112 Human Parp-1 Zinc Finger 2 Length = 112 3e-05
2cs2_A134 Solution Structure Of The Second Zn-Finger Domain O 4e-05
>pdb|4DQY|C Chain C, Structure Of Human Parp-1 Bound To A Dna Double Strand Break Length = 506 Back     alignment and structure 
Iteration: 1

 Score =  447 bits (1150), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/512 (46%), Positives = 337/512 (65%), Gaps = 28/512 (5%)
Query: 451 ESSSMVTIKVKGRSAVHEASGMQDTGHILEDGKSVYNTTLNMSDLSTGVNSYYILQIIQD 510
           +S   + + +KG +AV   SG++ + H+LE G  V++ TL + D+  G NSYY LQ+++D
Sbjct: 2   KSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFSATLGLVDIVKGTNSYYKLQLLED 61
Query: 511 DKGSDCYVFRKWGRVGNDKIGGSKLEEC-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQ 569
           DK +  ++FR WGRVG   IG +KLE+  SKEDA+  F +L+ EKTGN W +    +NF 
Sbjct: 62  DKENRYWIFRSWGRVGT-VIGSNKLEQMPSKEDAIEHFMKLYEEKTGNAWHS----KNFT 116
Query: 570 KKPGKILPTGYCTSYSLSDYGVNKQVSEKIGTD--ADSQLAPALVELMKMLFNVETYRAA 627
           K P K  P          DYG +++  +K+  +    S+L   + +L+KM+F+VE+ + A
Sbjct: 117 KYPKKFYPLEI-------DYGQDEEAVKKLTVNPGTKSKLPKPVQDLIKMIFDVESMKKA 169
Query: 628 MMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNNGAYDPSVKESLIIDASNRFFTVI 687
           M+E++I++ +MPLGKLSK  IQ  +  L+E+Q  ++ G+ D     S I+D SNRF+T+I
Sbjct: 170 MVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQGSSD-----SQILDLSNRFYTLI 224
Query: 688 PS----IHPHVIRDEDDFKSKVKMLEALQDIEIASRLV--GFDVDSDDSLDEKYKKLCCD 741
           P       P ++ + D  ++K +ML+ L DIE+A  L+  G D  S D +D  Y+KL  D
Sbjct: 225 PHDFGMKKPPLLNNADSVQAKAEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTD 284
Query: 742 IAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRML 801
           I  +  DSE+ ++I KY+  THA TH  + LE+ ++F +EREGE  ++  + ++L NR L
Sbjct: 285 IKVVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPF-KQLHNRRL 343
Query: 802 LWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLM 861
           LWHGSR TNF GILSQGLRIAPPEAP TGYMFGKGIYFAD+VSKSA YC T + +P+GL+
Sbjct: 344 LWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLI 403
Query: 862 LLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPVPSN 921
           LL EV LG +YELK A ++ K P GKHS KGLGKT P  S  +   D V VP G  + S 
Sbjct: 404 LLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSANISL-DGVDVPLGTGISSG 462
Query: 922 VRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 953
           V  + L+YNEYIVY+ AQV +++LLK++F+ K
Sbjct: 463 VNDTSLLYNEYIVYDIAQVNLKYLLKLKFNFK 494
>pdb|1UK0|A Chain A, Crystal Structure Of Catalytic Domain Of Human Poly(Adp- Ribose) Polymerase With A Novel Inhibitor Length = 350 Back     alignment and structure
>pdb|2RD6|A Chain A, Parp Complexed With A861695 Length = 350 Back     alignment and structure
>pdb|1A26|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase Complexed With Carba-Nad Length = 361 Back     alignment and structure
>pdb|1EFY|A Chain A, Crystal Structure Of The Catalytic Fragment Of Poly (Adp- Ribose) Polymerase Complexed With A Benzimidazole Inhibitor Length = 350 Back     alignment and structure
>pdb|1GS0|A Chain A, Crystal Structure Of The Catalytic Fragment Of Murine Poly (Adp-Ribose) Polymerase-2 Length = 351 Back     alignment and structure
>pdb|3KCZ|A Chain A, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In Complex With An Inhibitor 3-Aminobenzamide Length = 368 Back     alignment and structure
>pdb|3C49|A Chain A, Human Poly(Adp-Ribose) Polymerase 3, Catalytic Fragment In Complex With An Inhibitor Ku0058948 Length = 357 Back     alignment and structure
>pdb|1V9X|A Chain A, Solution Structure Of The First Zn-Finger Domain Of Poly(Adp-Ribose) Polymerase-1 Length = 114 Back     alignment and structure
>pdb|2CR9|A Chain A, Solution Structure Of Wgr Domain Of Poly(Adp-Ribose) Polymerase-1 Length = 139 Back     alignment and structure
>pdb|4AV1|A Chain A, Crystal Structure Of The Human Parp-1 Dna Binding Domain In Complex With Dna Length = 223 Back     alignment and structure
>pdb|2RIQ|A Chain A, Crystal Structure Of The Third Zinc-Binding Domain Of Human Parp-1 Length = 160 Back     alignment and structure
>pdb|2JVN|A Chain A, Domain C Of Human Parp-1 Length = 126 Back     alignment and structure
>pdb|2DMJ|A Chain A, Solution Structure Of The First Zf-Parp Domain Of Human Poly(Adp-Ribose)polymerase-1 Length = 106 Back     alignment and structure
>pdb|3ODA|A Chain A, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna Length = 116 Back     alignment and structure
>pdb|2L30|A Chain A, Human Parp-1 Zinc Finger 1 Length = 108 Back     alignment and structure
>pdb|3OD8|A Chain A, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna Length = 116 Back     alignment and structure
>pdb|2EOC|A Chain A, Solution Structure Of The Wgr Domain From Human Poly [adp- Ribose] Polymerase-3 Length = 124 Back     alignment and structure
>pdb|3ODC|A Chain A, Human Parp-1 Zinc Finger 2 (Zn2) Bound To Dna Length = 111 Back     alignment and structure
>pdb|2L31|A Chain A, Human Parp-1 Zinc Finger 2 Length = 112 Back     alignment and structure
>pdb|2CS2|A Chain A, Solution Structure Of The Second Zn-Finger Domain Of Poly(Adp-Ribose) Polymerase-1 Length = 134 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query954
4dqy_C506 Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-rib 1e-155
1efy_A350 Poly (ADP-ribose) polymerase; benzimidazole, inhib 1e-120
3kjd_A368 Poly [ADP-ribose] polymerase 2; transferase, enzym 1e-117
3c4h_A357 Poly(ADP-ribose) polymerase 3; enzyme-inhibitor co 2e-97
4av1_A223 Poly [ADP-ribose] polymerase 1; transferase, PARP1 7e-49
4av1_A223 Poly [ADP-ribose] polymerase 1; transferase, PARP1 7e-18
4av1_A223 Poly [ADP-ribose] polymerase 1; transferase, PARP1 4e-16
2riq_A160 Poly [ADP-ribose] polymerase 1; Zn-binding domain, 2e-48
4f0d_A277 PARP-16, poly [ADP-ribose] polymerase 16; transfer 3e-39
3u9h_A240 Tankyrase-2; protein-ligand complex, diphtheria to 8e-37
1v9x_A114 Poly (ADP-ribose) polymerase; PARP, DNA repair, in 3e-36
1v9x_A114 Poly (ADP-ribose) polymerase; PARP, DNA repair, in 1e-15
2dmj_A106 Poly (ADP-ribose) polymerase family, member 1; zin 4e-34
2dmj_A106 Poly (ADP-ribose) polymerase family, member 1; zin 3e-15
3od8_A116 Poly [ADP-ribose] polymerase 1; protein-DNA comple 8e-34
3od8_A116 Poly [ADP-ribose] polymerase 1; protein-DNA comple 3e-16
2pqf_A198 Poly [ADP-ribose] polymerase 12; enzyme-inhibitor 3e-33
3blj_A221 Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, 1e-30
3smj_A193 Poly [ADP-ribose] polymerase 14; diphtheria toxin 2e-30
1uw0_A117 DNA ligase III; DNA repair, zinc finger, PARP-like 2e-29
1uw0_A117 DNA ligase III; DNA repair, zinc finger, PARP-like 4e-12
3hkv_A217 PARP-10, poly [ADP-ribose] polymerase 10; NAD, tra 5e-28
3odc_A111 Poly [ADP-ribose] polymerase 1; protein-DNA comple 7e-28
3odc_A111 Poly [ADP-ribose] polymerase 1; protein-DNA comple 1e-15
2x5y_A173 Zinc finger CCCH-type antiviral protein 1; antivir 2e-27
2cs2_A134 Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repa 2e-27
2cs2_A134 Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repa 1e-16
2eoc_A124 Poly [ADP-ribose] polymerase 3; anti-parallel beta 3e-24
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
3l3e_A107 DNA topoisomerase 2-binding protein 1; BRCT domain 3e-07
2d8m_A129 DNA-repair protein XRCC1; parallel beta-sheet, DNA 5e-07
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 4e-05
3pc6_A104 DNA repair protein XRCC1; BRCT domain, protein:pro 5e-04
1wf6_A132 Similar to S.pombe -RAD4+/CUT5+product (A40727); B 7e-04
2cok_A113 Poly [ADP-ribose] polymerase-1; BRCT domain, DNA r 9e-04
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A Length = 506 Back     alignment and structure
 Score =  466 bits (1199), Expect = e-155
 Identities = 231/510 (45%), Positives = 326/510 (63%), Gaps = 24/510 (4%)

Query: 451 ESSSMVTIKVKGRSAVHEASGMQDTGHILEDGKSVYNTTLNMSDLSTGVNSYYILQIIQD 510
           +S   + + +KG +AV   SG++ + H+LE G  V++ TL + D+  G NSYY LQ+++D
Sbjct: 2   KSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFSATLGLVDIVKGTNSYYKLQLLED 61

Query: 511 DKGSDCYVFRKWGRVGNDKIGGSKLEEC-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQ 569
           DK +  ++FR WGRVG   IG +KLE+  SKEDA+  F +L+ EKTGN W      +NF 
Sbjct: 62  DKENRYWIFRSWGRVG-TVIGSNKLEQMPSKEDAIEHFMKLYEEKTGNAWH----SKNFT 116

Query: 570 KKPGKILPTGYCTSYSLSDYGVNKQVSEKIGTDADSQLAPALVELMKMLFNVETYRAAMM 629
           K P K     +                  +     S+L   + +L+KM+F+VE+ + AM+
Sbjct: 117 KYPKK-----FYPLEIDYGQDEEAVKKLTVNPGTKSKLPKPVQDLIKMIFDVESMKKAMV 171

Query: 630 EFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNNGAYDPSVKESLIIDASNRFFTVIPS 689
           E++I++ +MPLGKLSK  IQ  +  L+E+Q  ++ G+ D       I+D SNRF+T+IP 
Sbjct: 172 EYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQGSSDSQ-----ILDLSNRFYTLIPH 226

Query: 690 IH----PHVIRDEDDFKSKVKMLEALQDIEIASRLV--GFDVDSDDSLDEKYKKLCCDIA 743
                 P ++ + D  ++K +ML+ L DIE+A  L+  G D  S D +D  Y+KL  DI 
Sbjct: 227 DFGMKKPPLLNNADSVQAKAEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIK 286

Query: 744 PLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLW 803
            +  DSE+ ++I KY+  THA TH  + LE+ ++F +EREGE  ++  + ++L NR LLW
Sbjct: 287 VVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPF-KQLHNRRLLW 345

Query: 804 HGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLL 863
           HGSR TNF GILSQGLRIAPPEAP TGYMFGKGIYFAD+VSKSA YC T + +P+GL+LL
Sbjct: 346 HGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILL 405

Query: 864 SEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPVPSNVR 923
            EV LG +YELK A ++ K P GKHS KGLGKT P  S  +   D V VP G  + S V 
Sbjct: 406 GEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSANISL-DGVDVPLGTGISSGVN 464

Query: 924 ASELMYNEYIVYNTAQVKMQFLLKVRFHHK 953
            + L+YNEYIVY+ AQV +++LLK++F+ K
Sbjct: 465 DTSLLYNEYIVYDIAQVNLKYLLKLKFNFK 494
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A* Length = 350 Back     alignment and structure
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A Length = 368 Back     alignment and structure
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A* Length = 357 Back     alignment and structure
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A Length = 223 Back     alignment and structure
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A Length = 223 Back     alignment and structure
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A Length = 223 Back     alignment and structure
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A Length = 160 Back     alignment and structure
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens} Length = 277 Back     alignment and structure
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* Length = 240 Back     alignment and structure
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana} Length = 114 Back     alignment and structure
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana} Length = 114 Back     alignment and structure
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens} Length = 106 Back     alignment and structure
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens} Length = 106 Back     alignment and structure
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A Length = 116 Back     alignment and structure
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A Length = 116 Back     alignment and structure
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens} Length = 198 Back     alignment and structure
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A* Length = 221 Back     alignment and structure
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* Length = 193 Back     alignment and structure
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12 Length = 117 Back     alignment and structure
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12 Length = 117 Back     alignment and structure
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens} Length = 217 Back     alignment and structure
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A Length = 111 Back     alignment and structure
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A Length = 111 Back     alignment and structure
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens} Length = 173 Back     alignment and structure
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134 Back     alignment and structure
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134 Back     alignment and structure
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129 Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298 Back     alignment and structure
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} PDB: 3pc8_A* 3qvg_B* 1cdz_A Length = 104 Back     alignment and structure
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Length = 132 Back     alignment and structure
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A Length = 113 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query954
4dqy_C506 Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-rib 100.0
3kjd_A368 Poly [ADP-ribose] polymerase 2; transferase, enzym 100.0
1efy_A350 Poly (ADP-ribose) polymerase; benzimidazole, inhib 100.0
3c4h_A357 Poly(ADP-ribose) polymerase 3; enzyme-inhibitor co 100.0
4av1_A223 Poly [ADP-ribose] polymerase 1; transferase, PARP1 100.0
2riq_A160 Poly [ADP-ribose] polymerase 1; Zn-binding domain, 100.0
3u9h_A240 Tankyrase-2; protein-ligand complex, diphtheria to 100.0
2x5y_A173 Zinc finger CCCH-type antiviral protein 1; antivir 100.0
2pqf_A198 Poly [ADP-ribose] polymerase 12; enzyme-inhibitor 100.0
3blj_A221 Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, 100.0
3hkv_A217 PARP-10, poly [ADP-ribose] polymerase 10; NAD, tra 100.0
3smj_A193 Poly [ADP-ribose] polymerase 14; diphtheria toxin 100.0
2eoc_A124 Poly [ADP-ribose] polymerase 3; anti-parallel beta 99.97
1v9x_A114 Poly (ADP-ribose) polymerase; PARP, DNA repair, in 99.94
3od8_A116 Poly [ADP-ribose] polymerase 1; protein-DNA comple 99.94
2dmj_A106 Poly (ADP-ribose) polymerase family, member 1; zin 99.93
1uw0_A117 DNA ligase III; DNA repair, zinc finger, PARP-like 99.92
3odc_A111 Poly [ADP-ribose] polymerase 1; protein-DNA comple 99.91
2cs2_A134 Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repa 99.9
4av1_A223 Poly [ADP-ribose] polymerase 1; transferase, PARP1 99.82
4f0d_A277 PARP-16, poly [ADP-ribose] polymerase 16; transfer 99.78
1v9x_A114 Poly (ADP-ribose) polymerase; PARP, DNA repair, in 99.74
3odc_A111 Poly [ADP-ribose] polymerase 1; protein-DNA comple 99.74
2cs2_A134 Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repa 99.73
2dmj_A106 Poly (ADP-ribose) polymerase family, member 1; zin 99.72
1uw0_A117 DNA ligase III; DNA repair, zinc finger, PARP-like 99.71
3od8_A116 Poly [ADP-ribose] polymerase 1; protein-DNA comple 99.71
3l3e_A107 DNA topoisomerase 2-binding protein 1; BRCT domain 99.17
2d8m_A129 DNA-repair protein XRCC1; parallel beta-sheet, DNA 98.91
2cok_A113 Poly [ADP-ribose] polymerase-1; BRCT domain, DNA r 98.87
3l46_A112 Protein ECT2; alternative splicing, guanine-nucleo 98.85
2ebw_A97 DNA repair protein REV1; A/B/A 3 layers, parallel 98.71
4id3_A92 DNA repair protein REV1; BRCT domain, protein bind 98.7
2cou_A109 ECT2 protein; BRCT domain, RHO GTPase, structural 98.66
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 98.45
3pa6_A107 Microcephalin; BRCT domain, cell cycle; HET: MSE; 98.39
1l7b_A92 DNA ligase; BRCT, autostructure, structural genomi 98.34
3ef1_A442 RNA polymerase II subunit A C-terminal domain phos 98.3
3ef0_A372 RNA polymerase II subunit A C-terminal domain phos 98.29
2k6g_A109 Replication factor C subunit 1; protein, BRCT, DNA 98.23
2ebu_A112 Replication factor C subunit 1; A/B/A 3 layers, pa 98.2
1wf6_A132 Similar to S.pombe -RAD4+/CUT5+product (A40727); B 98.17
3pc6_A104 DNA repair protein XRCC1; BRCT domain, protein:pro 98.14
3sqd_A219 PAX-interacting protein 1; tandem BRCT domains, ce 98.03
2vxb_A241 DNA repair protein RHP9; BRCT, nucleus, cell cycle 98.03
1l0b_A229 BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu 98.02
2nte_A210 BARD-1, BRCA1-associated ring domain protein 1; BR 97.92
1t15_A214 Breast cancer type 1 susceptibility protein; prote 97.92
3al2_A235 DNA topoisomerase 2-binding protein 1; BRCT domain 97.86
1kzy_C259 Tumor suppressor P53-binding protein 1; tandem-BRC 97.85
2etx_A209 Mediator of DNA damage checkpoint protein 1; tande 97.76
3ii6_X263 DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter 97.64
3u3z_A199 Microcephalin; DNA repair, cell cycle regulation, 97.62
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 97.59
3l41_A220 BRCT-containing protein 1; BRC1, BRCT domain, tand 97.14
2ep8_A100 Pescadillo homolog 1; A/B/A 3 layers, nucleolus, r 96.72
1l0b_A229 BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu 96.67
3u3z_A199 Microcephalin; DNA repair, cell cycle regulation, 96.56
1t15_A214 Breast cancer type 1 susceptibility protein; prote 96.41
1z56_C264 DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA 96.38
1dgs_A667 DNA ligase; AMP complex, NAD+-dependent; HET: DNA 96.21
2owo_A671 DNA ligase; protein-DNA complex, ligase-DNA comple 96.14
2jw5_A106 DNA polymerase lambda; BRCT domain, family X polym 96.04
3ii6_X263 DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter 96.04
2coe_A120 Deoxynucleotidyltransferase, terminal variant; BRC 95.86
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 95.75
2etx_A209 Mediator of DNA damage checkpoint protein 1; tande 95.61
3pc7_A88 DNA ligase 3; DNA repair, BRCT domain, protein:pro 95.55
1z56_C264 DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA 94.85
1kzy_C259 Tumor suppressor P53-binding protein 1; tandem-BRC 94.33
2nte_A210 BARD-1, BRCA1-associated ring domain protein 1; BR 93.21
3al2_A235 DNA topoisomerase 2-binding protein 1; BRCT domain 92.62
3sqd_A219 PAX-interacting protein 1; tandem BRCT domains, ce 92.54
2dun_A133 POL MU, DNA polymerase MU; layers A/B/A, parallel 91.84
2l42_A106 DNA-binding protein RAP1; BRCT domain, protein bin 89.11
2cup_A101 Skeletal muscle LIM-protein 1; four and half LIM d 81.27
2rnn_A114 E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA bind 80.6
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A Back     alignment and structure
Probab=100.00  E-value=6.9e-125  Score=1091.88  Aligned_cols=482  Identities=49%  Similarity=0.862  Sum_probs=429.0

Q ss_pred             CcceeeeecCCcccCCCCCCCCccEEeecCCeeEEEEEEeecCCCCCccEEEEEEEEcCCCCcEEEEEEeeecccccCCC
Q 035625          453 SSMVTIKVKGRSAVHEASGMQDTGHILEDGKSVYNTTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGG  532 (954)
Q Consensus       453 ~~~~~~~~kg~~~Vd~~s~l~~~~hV~~d~~~~Y~~~L~~tdi~~~~N~fY~lQll~~~~~~~y~v~~~WGRVG~~~~G~  532 (954)
                      ++++++++||+++|||+|++++.+|||++++.+|+|+|++||++.|+|+||+|||++++..+.|+||++|||||+. +|+
T Consensus         4 ~~~~~~~~kg~~~Vd~~~~~~~~~~Vy~~~~~~Y~~~L~~td~~~n~NkfY~lQll~~~~~~~y~v~~rWGRVG~~-~Gq   82 (506)
T 4dqy_C            4 EKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFSATLGLVDIVKGTNSYYKLQLLEDDKENRYWIFRSWGRVGTV-IGS   82 (506)
T ss_dssp             -----------CCCCGGGSCTTTSCCCEETTEESEEEEEEECTTTCCEEEEEEECC--------CEEEEEEETTSS-CEE
T ss_pred             CceEEEEEeCCeecCCccCCCCceEEEEeCCeEEEEEEEcccccCCCcceEEEEEEEcCCCCEEEEEEEECccCcc-ccc
Confidence            4568899999999999999999999999999999999999999999999999999998877899999999999985 389


Q ss_pred             ccccCC-CHHHHHHHHHHHHHHHhCCCccchhhcccCccCCCcceeccccCCCcccccccccccccc--cCCCCCCCCcH
Q 035625          533 SKLEEC-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKILPTGYCTSYSLSDYGVNKQVSEK--IGTDADSQLAP  609 (954)
Q Consensus       533 ~kl~~~-s~e~Ai~~F~k~F~eKTGn~W~~~~~r~~f~k~pgKy~~ve~~~~~s~~d~~~~~~~~~~--~~~~~~s~L~~  609 (954)
                      +++++| ++++|+++|+++|++||||.|++   | +|+++||||++||       +||+.+++...+  .....+|+|++
T Consensus        83 ~~l~~~~s~~~Ai~~F~k~F~~KTgn~W~~---R-~f~k~pgKy~~ve-------~d~~~~~~~~~~~~~~~~~~s~L~~  151 (506)
T 4dqy_C           83 NKLEQMPSKEDAIEHFMKLYEEKTGNAWHS---K-NFTKYPKKFYPLE-------IDYGQDEEAVKKLTVNPGTKSKLPK  151 (506)
T ss_dssp             EEEECCSCSHHHHHHHHHHHHHHHSSCSSC---S-SCCCCTTCCEEEC-------BC-----------------CCCSCH
T ss_pred             ceeccCCCHHHHHHHHHHHHHHHhcCCccc---c-CccccCCccceee-------cccccchhhhhhhcccCCCCCCCCH
Confidence            999988 69999999999999999999974   7 9999999999999       999765433221  22457899999


Q ss_pred             HHHHHHHHHcCHHHHHHHHHHhccCcCCCCccCCCHHHHHHHHHHHHHHHHHHhCCCCCCchhhhHHHHhhccccccccC
Q 035625          610 ALVELMKMLFNVETYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNNGAYDPSVKESLIIDASNRFFTVIPS  689 (954)
Q Consensus       610 ~Vq~l~~~Ifd~~~~~~~m~~~~~d~~kmPLGkLSk~qI~~a~~vL~ei~~~l~~~~~~~~~~~~~l~~lsn~fYtlIPh  689 (954)
                      +||+||++|||+++|+++|++|++|+.+||||+||++||.+||+||++|+++|++..     .++.|.+|||+|||+|||
T Consensus       152 ~Vq~Li~lIfd~~~~~~~m~~~~~D~~k~PLGkLS~~qI~~g~~vL~~i~~~l~~~~-----~~~~l~~lsn~fYtlIPh  226 (506)
T 4dqy_C          152 PVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQGS-----SDSQILDLSNRFYTLIPH  226 (506)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHTTTBCCSSTTTSCBCHHHHHHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHSCB
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhCCChhhCCCccCCHHHHHHHHHHHHHHHHHHhccc-----cHHHHHHHHhhhhEeCCc
Confidence            999999999999999999999999999999999999999999999999999998653     346899999999999999


Q ss_pred             C----CCCCCCCHHHHHHHHHHHHHHHhHHHHHHhcCCC--CCCCCchHHHHhhcCCEEEECCCCCHHHHHHHHHHHhcC
Q 035625          690 I----HPHVIRDEDDFKSKVKMLEALQDIEIASRLVGFD--VDSDDSLDEKYKKLCCDIAPLPHDSEDYQLIEKYLHATH  763 (954)
Q Consensus       690 ~----~p~~i~~~~~l~~k~~lle~L~die~A~~ll~~~--~~~~~pld~~Y~~L~~~i~~L~~~s~Ey~~I~~y~~~t~  763 (954)
                      +    +||+|++.++|++|++||++|.|||+|++|++..  ....||||++|++|+|+|++|+++|+||++|++||.+|+
T Consensus       227 ~fg~~~pp~i~~~~~l~~k~~ll~~L~dieiA~~l~~~~~~~~~~~pld~~Y~~L~~~l~~L~~~s~Ey~~I~~~~~~T~  306 (506)
T 4dqy_C          227 DFGMKKPPLLNNADSVQAKAEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTH  306 (506)
T ss_dssp             CCTTSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCTTSCHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHTC
T ss_pred             cccCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHhCcEEEECCCCChHHHHHHHHHHhcc
Confidence            7    7999999999999999999999999999999643  346899999999999999999999999999999999999


Q ss_pred             CCCCCCCccccCceeeeecccccchhhHHHhhcCCcceeEecCCCCChhhhhccCCCCCCCCCCCcceeeeeeeeccccc
Q 035625          764 APTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLV  843 (954)
Q Consensus       764 ~~~h~~~~~~I~~If~V~r~~e~~rf~~~k~~~~N~~lLwHGSr~~N~~gILs~Glriap~~ap~tGymFGkGIYFAd~~  843 (954)
                      +++|..++++|++||||+|++|+++|+.+ ++++|+++|||||+.+|+++||++||+++|++|+.+|+|||+|||||+++
T Consensus       307 ~~~h~~~~~~I~~I~rI~~~~e~~~f~~~-k~~~N~~lL~HGT~~~n~~~Il~~Gf~~~~~~a~~~G~~fGkGiYFA~~a  385 (506)
T 4dqy_C          307 ATTHNAYDLEVIDIFKIEREGECQRYKPF-KQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMV  385 (506)
T ss_dssp             CSSCTTCCCCEEEEEEEEETTTTTTTHHH-HSSSCEEEEEEECCTTTHHHHHHHCSCCCCSSSCCTTCSSCSSEEEBSSH
T ss_pred             CcccccCCceeEeEEEEccHHHHhhHHHh-hcCCCceEEecCCChHhHHHHHhcCCCcCCccCCcCCceeeeeEEecchh
Confidence            99998889999999999999999999987 67899999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCCCceEEEEEEEeeCceeeeccccCCCCCCCCCCCccccCCccCCCCCceeecCCeEecCCCcccCCCC
Q 035625          844 SKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPVPSNVR  923 (954)
Q Consensus       844 sKSa~Yc~~~~~~~~~~mlLceVaLG~~~~~~~~~~~~~~p~g~~Sv~g~G~~~P~p~~~~~~~dgv~vp~G~~~~~~~~  923 (954)
                      |||++||.++..++.++||||+|+||+++++++++++++||+|||||+|+|++.|+|++. .+.|||+||+|+|+++...
T Consensus       386 skS~~Y~~~~~~~~~~~mll~~V~lG~~~~~~~~~~~~~~p~G~dSv~g~g~~~P~p~~~-~~~dGv~vP~G~~~~~~~~  464 (506)
T 4dqy_C          386 SKSANYCHTSQGDPIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSAN-ISLDGVDVPLGTGISSGVN  464 (506)
T ss_dssp             HHHHTTSCCCSSSCEEEEEEEEEECCSEEEESSCCCCSSCCTTCCEEEECCSEEECGGGC-EESSSCEECCCCEEECSCC
T ss_pred             hccccccCCCCCCCeEEEEEEEEecCCceecccchhhhccCCCCceEEeCCcCcCCcccc-cccCCeEEECCCcccCCCC
Confidence            999999999877889999999999999999998888999999999999999999999998 7889999999999998888


Q ss_pred             CCCCCCCEEEEeeCCccceeeEEEEEeeec
Q 035625          924 ASELMYNEYIVYNTAQVKMQFLLKVRFHHK  953 (954)
Q Consensus       924 ~~~l~ynEyIVYd~~Qv~~~YLi~~~~~~~  953 (954)
                      +++|+||||||||++||+|||||+|+|+|+
T Consensus       465 ~~~l~ynEyiVYd~~Qir~rYLv~v~~~~~  494 (506)
T 4dqy_C          465 DTSLLYNEYIVYDIAQVNLKYLLKLKFNFK  494 (506)
T ss_dssp             CCSCSBCEEEESSGGGEEEEEEEEEECCCC
T ss_pred             CCcccccceEEEchHHeeEEEEEEEEEEcc
Confidence            899999999999999999999999999987
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A Back     alignment and structure
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A* Back     alignment and structure
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A* Back     alignment and structure
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A Back     alignment and structure
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A Back     alignment and structure
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ... Back     alignment and structure
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens} Back     alignment and structure
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens} Back     alignment and structure
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A* Back     alignment and structure
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens} Back     alignment and structure
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A* Back     alignment and structure
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A* Back     alignment and structure
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens} Back     alignment and structure
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12 Back     alignment and structure
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A Back     alignment and structure
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A Back     alignment and structure
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens} Back     alignment and structure
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A Back     alignment and structure
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens} Back     alignment and structure
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12 Back     alignment and structure
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A* Back     alignment and structure
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A Back     alignment and structure
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Back     alignment and structure
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Back     alignment and structure
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* Back     alignment and structure
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2 Back     alignment and structure
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Back     alignment and structure
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Back     alignment and structure
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A Back     alignment and structure
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Back     alignment and structure
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A Back     alignment and structure
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Back     alignment and structure
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* Back     alignment and structure
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Back     alignment and structure
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Back     alignment and structure
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Back     alignment and structure
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Back     alignment and structure
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B Back     alignment and structure
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Back     alignment and structure
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Back     alignment and structure
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Back     alignment and structure
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Back     alignment and structure
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Back     alignment and structure
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Back     alignment and structure
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Back     alignment and structure
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} Back     alignment and structure
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A* Back     alignment and structure
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli} Back     alignment and structure
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Back     alignment and structure
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Back     alignment and structure
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A* Back     alignment and structure
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} Back     alignment and structure
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B Back     alignment and structure
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Back     alignment and structure
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Back     alignment and structure
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Back     alignment and structure
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A* Back     alignment and structure
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 Back     alignment and structure
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 954
d1efya2215 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase 4e-75
d1gs0a2217 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, 6e-74
d2cr9a1126 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1 3e-41
d1efya1135 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) po 2e-40
d1gs0a1134 a.41.1.1 (A:207-340) Domain of poly(ADP-ribose) po 3e-39
d1uw0a_117 g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens 1e-27
d1uw0a_117 g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens 1e-14
d1t15a2102 c.15.1.3 (A:1758-1859) Breast cancer associated pr 0.002
>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 215 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  243 bits (621), Expect = 4e-75
 Identities = 118/216 (54%), Positives = 157/216 (72%), Gaps = 2/216 (0%)

Query: 738 LCCDIAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLK 797
           L  DI  +  DSE+ ++I++Y+  THA TH  + L++ E+F +EREGE  ++  + ++L 
Sbjct: 1   LRTDIKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEIFRIEREGESQRYKPF-KQLH 59

Query: 798 NRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNP 857
           NR LLWHGSR TNF GILSQGLRIAPPEAP TGYMFGKGIYFAD+VSKSA YC T + +P
Sbjct: 60  NRQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQADP 119

Query: 858 VGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKP 917
           +GL+LL EV LG +YELK A ++ K P GKHS KGLGKT P  +      D V VP G  
Sbjct: 120 IGLILLGEVALGNMYELKNASHITKLPKGKHSVKGLGKTAPDPTATTTL-DGVEVPLGNG 178

Query: 918 VPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 953
           + + +  + L+YNEYIVY+ AQV +++LLK++F++K
Sbjct: 179 ISTGINDTCLLYNEYIVYDVAQVNLKYLLKLKFNYK 214
>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 217 Back     information, alignment and structure
>d2cr9a1 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1, PARP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1efya1 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) polymerase {Chicken (Gallus gallus) [TaxId: 9031]} Length = 135 Back     information, alignment and structure
>d1gs0a1 a.41.1.1 (A:207-340) Domain of poly(ADP-ribose) polymerase {Mouse (Mus musculus) [TaxId: 10090]} Length = 134 Back     information, alignment and structure
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query954
d1gs0a2217 Poly(ADP-ribose) polymerase, C-terminal domain {Mo 100.0
d1efya2215 Poly(ADP-ribose) polymerase, C-terminal domain {Ch 100.0
d2cr9a1126 Poly [ADP-ribose] polymerase-1, PARP-1 {Human (Hom 100.0
d1gs0a1134 Domain of poly(ADP-ribose) polymerase {Mouse (Mus 100.0
d1efya1135 Domain of poly(ADP-ribose) polymerase {Chicken (Ga 100.0
d1uw0a_117 DNA ligase III {Human (Homo sapiens) [TaxId: 9606] 99.92
d1uw0a_117 DNA ligase III {Human (Homo sapiens) [TaxId: 9606] 99.72
d1cdza_96 DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta 98.54
d1t15a2102 Breast cancer associated protein, BRCA1 {Human (Ho 98.47
d1l7ba_92 NAD+-dependent DNA ligase, domain 4 {Thermus therm 98.42
d1wf6a_132 DNA topoisomerase II binding protein 1, TopBP1 {Hu 98.42
d1t15a1109 Breast cancer associated protein, BRCA1 {Human (Ho 98.34
d1kzyc1153 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 97.19
d1in1a_88 DNA ligase III alpha {Human (Homo sapiens) [TaxId: 96.87
d1l0ba297 Breast cancer associated protein, BRCA1 {Rat (Ratt 94.48
d1kzyc2106 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 94.38
d1rutx331 LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10 87.58
d1h1js_44 S/mar DNA-binding protein Tho1 {Baker's yeast (Sac 85.93
d1zrja137 Heterogeneous nuclear ribonucleoprotein U-like pro 84.82
d1jeqa151 DNA binding C-terminal domain of ku70 {Human (Homo 82.57
d2akla238 Hypothetical protein PA0128, N-terminal domain {Ps 80.88
>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.9e-55  Score=457.72  Aligned_cols=212  Identities=53%  Similarity=0.960  Sum_probs=199.0

Q ss_pred             cCCEEEECCCCCHHHHHHHHHHHhcCCCCCCCCccccCceeeeecccccchhhHHHhhcCCcceeEecCCCCChhhhhcc
Q 035625          738 LCCDIAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQ  817 (954)
Q Consensus       738 L~~~i~~L~~~s~Ey~~I~~y~~~t~~~~h~~~~~~I~~If~V~r~~e~~rf~~~k~~~~N~~lLwHGSr~~N~~gILs~  817 (954)
                      |+|+|+||+++|+||++|++||.+|++++|..+.++|++||+|+|.+++++|.   .+.+|+++|||||+.+|+.+||++
T Consensus         1 L~c~i~~l~~~s~ey~~I~~~~~~t~~~~~~~~~~~I~~I~~v~r~~e~~~~~---~~~~n~~~LfHGT~~~n~~~Il~~   77 (217)
T d1gs0a2           1 LHCALRPLDHESNEFKVISQYLQSTHAPTHKDYTMTLLDVFEVEKEGEKEAFR---EDLPNRMLLWHGSRLSNWVGILSH   77 (217)
T ss_dssp             TTEEEEECCTTSHHHHHHHHHHHHTCCTTCCSEEEEEEEEEEEEETTHHHHSC---TTCSCEEEEEEEECGGGHHHHHHH
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHhhCCCccCCCcceEEEEEEEcchhHHHHhh---hcCCceEEEEecccHHHHHHHHHc
Confidence            79999999999999999999999999999988899999999999999999986   578999999999999999999999


Q ss_pred             CCCCCCCCCCCcceeeeeeeecccccccccccccCCCCCCceEEEEEEEeeCceeeecccc-CCCCCCCCCCCccccCCc
Q 035625          818 GLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAK-YMDKPPDGKHSTKGLGKT  896 (954)
Q Consensus       818 Glriap~~ap~tGymFGkGIYFAd~~sKSa~Yc~~~~~~~~~~mlLceVaLG~~~~~~~~~-~~~~~p~g~~Sv~g~G~~  896 (954)
                      ||+++|+.++.+|+|||+||||||++++|++||.++.++++++||||+||||++.+++..+ .+.+||.|+|||+|+|++
T Consensus        78 Gf~~~~~~~~~~g~~fG~GiYfa~~~s~s~~y~~~~~~~~~~~m~l~~V~lG~~~~~~~~~~~~~~~p~g~~sv~~~g~~  157 (217)
T d1gs0a2          78 GLRVAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAQGLLRGKHSTKGMGKM  157 (217)
T ss_dssp             CSCCCCSSSCGGGSTTSSSEEEBSCHHHHHGGGCCCSSSCEEEEEEEEEECCSEEEESSCCTTGGGGCTTCSEEEECCSE
T ss_pred             CCCCCCccCcccceeeeccceeccccccccccccCCcCCCeEEEEEEEEEecceeeeccCCcccccCCCCcceeeecccc
Confidence            9999999999999999999999999999999999988889999999999999999887765 478899999999999999


Q ss_pred             cCCCCCceeecCCeEecCCCcccCCC---CCCCCCCCEEEEeeCCccceeeEEEEEeeec
Q 035625          897 VPQESDFVKWRDDVTVPCGKPVPSNV---RASELMYNEYIVYNTAQVKMQFLLKVRFHHK  953 (954)
Q Consensus       897 ~P~p~~~~~~~dgv~vp~G~~~~~~~---~~~~l~ynEyIVYd~~Qv~~~YLi~~~~~~~  953 (954)
                      .|+|+..+.+ ||++||+|+++++.+   .+++|.||||||||++||+|||||+|+|+|+
T Consensus       158 ~p~p~~~~~~-~g~~vp~g~~~~s~~~~~~~~~l~~nEyVVy~~~Qv~~~YLi~~k~~~~  216 (217)
T d1gs0a2         158 APSPAHFITL-NGSTVPLGPASDTGILNPEGYTLNYNEFIVYSPNQVRMRYLLKIQFNFL  216 (217)
T ss_dssp             ECCGGGCEEE-TTEEECCSCCEECCCCCSSSCCCSBCEEEESCGGGEEEEEEEEEEEEEC
T ss_pred             cCChhhcccc-CCeeccCCCccccCccCCCCCccccCeEEEEchhheeEEEEEEEEEEec
Confidence            9999988776 999999999886644   4568999999999999999999999999997
>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2cr9a1 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1, PARP-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gs0a1 a.41.1.1 (A:207-340) Domain of poly(ADP-ribose) polymerase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1efya1 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) polymerase {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure