Citrus Sinensis ID: 035626

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------

MSRGQQPLLSASSVRYRSDNLGYICSNASSSSSNTDDTLSDIDLKDEDIGTNNDNETATVDPLLPKEISLACPVKKSLHLVSMELGNSNITSATFEISKGSSLGQEKACKSQRVCHKSTQFEDNMCHEENPRSIYINDPRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIKDGYEDWRRHRSDRNENNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGLWLLRYKDRLDTLPYYRKLYFTNGKNNHKNLNIMGSLWRLFSLF

cccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccEEEEEcccccccccccccccEEEccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccEEEEEcEEEEccccEEEEcccccccccEEEEEcccccccEEEEEcccccccccccccccHHcHHccccccccEEEEEEcccccccccEEEEEEEccEEEccccccEEEcccccccccEEEEEEEEcccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHc

cccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccEEccEEHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccEEEEEEEEEEEEccEEEEEccccccccEEEEEccccccEEEEEEEcccccccHHHHHccHHHcccccHHHHccEEEEEccccccccEEEEEEEEcccEcccccccEEEEccEEccccEEEEEEEEEccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHcc

msrgqqpllsassvryrsdnlgyicsnasssssntddtlsdidlkdedigtnndnetatvdpllpkeislacpvkksLHLVSMELgnsnitsatfeiskgsslgqekacksqrvchkstqfednmcheenprsiyindprktndkyeftgneirtskyTLITFLPKNLFIQFHRVAYLYFLAIAAlnqlpplavfgrtvslFPLLFVLFVTAIKDGYedwrrhrsdrnennREALVLQSDQFHLKKWKNIRAGEVvkicsddtipcdvvllgtsdpsgIAYIQTMnldgesnlKTRYARQETASTVFEGsivsgtikceqpnrnvyEFTAnmefngqkfplsqsnivlrgcqlkntdwIIGVVVYAGQETKAMlnsaaspskrsrlenymnRETLWLSIFLLVMCLVVALGMGLWLLRYKdrldtlpyYRKLyftngknnhknlNIMGSLWRLFSLF

msrgqqpllsassvrYRSDNLGYIcsnasssssntddtLSDIDLkdedigtnndnetatvdpllpkEISLACPVKKSLHLVSMELGNSNITSATFEISKGSSLGQEKACKSQRVCHKStqfednmcheenprsiyindprktnDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIKDGYEDWRrhrsdrnennrealvlqsdqfhlkKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKTRYARQETastvfegsivsgtikceqpNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMlnsaaspskrsrLENYMNRETLWLSIFLLVMCLVVALGMGLWLLRYKDRLDTLPYYRKLYftngknnhknlnIMGSLWRLFSLF

MSRGQQPLLSASSVRYRSDNLGYICsnasssssntddtlsdidlKDEDIGTNNDNETATVDPLLPKEISLACPVKKSLHLVSMELGNSNITSATFEISKGSSLGQEKACKSQRVCHKSTQFEDNMCHEENPRSIYINDPRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTvslfpllfvlfvTAIKDGYEDWRRHRSDRNENNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGLWLLRYKDRLDTLPYYRKLYFTNGKNNHKNLNIMGSLWRLFSLF

*********************GYI**************************************LLPKEISLACPVKKSLHLVSMELGN**********************************************IYI*******DKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIKDGYEDWRR***********ALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQE******************NYMNRETLWLSIFLLVMCLVVALGMGLWLLRYKDRLDTLPYYRKLYFTNGKNNHKNLNIMGSLWRLFS**

************************************************************************************************************************************SIYINDPRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIKDGYEDWRRHRSDRNENNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAM************LENYMNRETLWLSIFLLVMCLVVALGMGLWLLRYKDRLDTLPYYRKLYFTNGKNNHKNLNIMGSLWRLFSLF

MSRGQQPLLSASSVRYRSDNLGYICSNA**********LSDIDLKDEDIGTNNDNETATVDPLLPKEISLACPVKKSLHLVSMELGNSNITSATFEISKG***************HKSTQFEDNMCHEENPRSIYINDPRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIKDGYEDWRRHRSDRNENNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGLWLLRYKDRLDTLPYYRKLYFTNGKNNHKNLNIMGSLWRLFSLF

********************************************************************************************************************************ENPRSIYINDPRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIKDGYEDWRRHRSDRNENNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGLWLLRYKDRLDTLPYYRKLYFTNGKNNHKNLNIMGSLWRLFSLF

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		457	2.2.26 [Sep-21-2011]
P98204		1158	Phospholipid-transporting	yes	no	0.757	0.298	0.567	1e-117
O54827		1508	Probable phospholipid-tra	yes	no	0.595	0.180	0.444	6e-66
Q8K2X1		1416	Probable phospholipid-tra	no	no	0.601	0.194	0.434	4e-64
Q9P241		1426	Probable phospholipid-tra	yes	no	0.601	0.192	0.426	1e-63
O60312		1499	Probable phospholipid-tra	no	no	0.619	0.188	0.416	8e-63
P70704		1149	Probable phospholipid-tra	no	no	0.673	0.268	0.391	2e-62
Q9Y2Q0		1164	Probable phospholipid-tra	no	no	0.645	0.253	0.397	3e-62
Q9NTI2		1148	Probable phospholipid-tra	no	no	0.641	0.255	0.403	3e-62
Q29449		1149	Probable phospholipid-tra	yes	no	0.645	0.256	0.407	3e-62
Q9XIE6		1213	Phospholipid-transporting	no	no	0.687	0.258	0.371	1e-61

>sp\|P98204\|ALA1_ARATH Phospholipid-transporting ATPase 1 OS=Arabidopsis thaliana GN=ALA1 PE=1 SV=1	Back alignment and function desciption

 Score =  422 bits (1086), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/354 (56%), Positives = 258/354 (72%), Gaps = 8/354 (2%)

Query: 111 SQRVCHKSTQFEDNM-------CHEENPRSIYINDPRKTNDKYEFTGNEIRTSKYTLITF 163
           S+R+ H S   +  M         +E+ R IYINDP +TN+++EFTGN I+T+KY++ TF
Sbjct: 40  SKRIRHGSAGADSEMLSMSQKEIKDEDARLIYINDPDRTNERFEFTGNSIKTAKYSVFTF 99

Query: 164 LPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIKDGYEDWRRH 223
           LP+NLF QFHRVAY+YFL IA LNQLP LAVFGR  S+ PL FVL V+AIKD YED+RRH
Sbjct: 100 LPRNLFEQFHRVAYIYFLVIAVLNQLPQLAVFGRGASIMPLAFVLLVSAIKDAYEDFRRH 159

Query: 224 RSDRNENNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQ 283
           RSDR ENNR ALV +  QF  KKWK+IR GEV+K+ S+ T+PCD+VLL TSDP+G+ Y+Q
Sbjct: 160 RSDRVENNRLALVFEDHQFREKKWKHIRVGEVIKVQSNQTLPCDMVLLATSDPTGVVYVQ 219

Query: 284 TMNLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQ 343
           T NLDGESNLKTRYA+QET     +    +G IKCE+PNRN+Y F ANME +G++  L  
Sbjct: 220 TTNLDGESNLKTRYAKQETLLKAADMESFNGFIKCEKPNRNIYGFQANMEIDGRRLSLGP 279

Query: 344 SNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAASPSKRSRLENYMNRETLWLSIFLLV 403
           SNI+LRGC+LKNT W +GVVVYAG ETKAMLN++ +PSKRSRLE  MN E + LS+FL+V
Sbjct: 280 SNIILRGCELKNTAWALGVVVYAGGETKAMLNNSGAPSKRSRLETRMNLEIILLSLFLIV 339

Query: 404 MCLVVALGMGLWLLRYKDRLDTLPYYRKLYFTNGKNNHKNLNIMGSLWRLFSLF 457
           +C + A    +WL  ++D LDT+ +YR+  ++  +   KN    G  W +F  F
Sbjct: 340 LCTIAAATAAVWLRTHRDDLDTILFYRRKDYSE-RPGGKNYKYYGWGWEIFFTF 392

Involved in transport of phospholipids.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 1

>sp\|O54827\|AT10A_MOUSE Probable phospholipid-transporting ATPase VA OS=Mus musculus GN=Atp10a PE=1 SV=4	Back alignment and function description

>sp\|Q8K2X1\|AT10D_MOUSE Probable phospholipid-transporting ATPase VD OS=Mus musculus GN=Atp10d PE=2 SV=2	Back alignment and function description

>sp\|Q9P241\|AT10D_HUMAN Probable phospholipid-transporting ATPase VD OS=Homo sapiens GN=ATP10D PE=2 SV=3	Back alignment and function description

>sp\|O60312\|AT10A_HUMAN Probable phospholipid-transporting ATPase VA OS=Homo sapiens GN=ATP10A PE=2 SV=2	Back alignment and function description

>sp\|P70704\|AT8A1_MOUSE Probable phospholipid-transporting ATPase IA OS=Mus musculus GN=Atp8a1 PE=1 SV=1	Back alignment and function description

>sp\|Q9Y2Q0\|AT8A1_HUMAN Probable phospholipid-transporting ATPase IA OS=Homo sapiens GN=ATP8A1 PE=1 SV=1	Back alignment and function description

>sp\|Q9NTI2\|AT8A2_HUMAN Probable phospholipid-transporting ATPase IB OS=Homo sapiens GN=ATP8A2 PE=2 SV=2	Back alignment and function description

>sp\|Q29449\|AT8A1_BOVIN Probable phospholipid-transporting ATPase IA OS=Bos taurus GN=ATP8A1 PE=1 SV=2	Back alignment and function description

>sp\|Q9XIE6\|ALA3_ARATH Phospholipid-transporting ATPase 3 OS=Arabidopsis thaliana GN=ALA3 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		457
449502673		1298	PREDICTED: LOW QUALITY PROTEIN: phosphol	0.969	0.341	0.685	1e-180
449449958		1298	PREDICTED: phospholipid-transporting ATP	0.969	0.341	0.685	1e-180
255575596		1383	phospholipid-transporting atpase, putati	0.901	0.297	0.737	1e-179
356566785		1305	PREDICTED: phospholipid-transporting ATP	0.949	0.332	0.683	1e-174
224091124		1294	aminophospholipid ATPase [Populus tricho	0.846	0.299	0.753	1e-170
356530169		1297	PREDICTED: phospholipid-transporting ATP	0.949	0.334	0.682	1e-170
359481230		1183	PREDICTED: phospholipid-transporting ATP	0.814	0.314	0.770	1e-169
224140613		1112	aminophospholipid ATPase [Populus tricho	0.722	0.296	0.815	1e-159
108708007		1302	phospholipid-translocating P-type ATPase	0.960	0.337	0.642	1e-158
242041031		1311	hypothetical protein SORBIDRAFT_01g03620	0.811	0.282	0.718	1e-156

>gi\|449502673\|ref\|XP_004161710.1\| PREDICTED: LOW QUALITY PROTEIN: phospholipid-transporting ATPase 1-like [Cucumis sativus]	Back alignment and taxonomy information

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 329/480 (68%), Positives = 373/480 (77%), Gaps = 37/480 (7%)

Query: 1   MSRGQQPLLSASS----VRYRSDN-----LGYICSNASSSSSNTDDTLSDI-DLKD---- 46
           M+ GQ PLL++S     + YRS +     +G +C +AS +SS+ DD  SDI D+K+    
Sbjct: 1   MTSGQ-PLLASSESPSVIEYRSQSRNRGSVGCLCRSASFTSSSYDDAHSDIVDVKENCAS 59

Query: 47  ---------ED-----IGTNNDNETATVDPLLPKEISLACPVKKSLHLVS---MELGNSN 89
                    ED     I  +   + +TV  LL ++     P +    LVS   ME+ N N
Sbjct: 60  PFGDNAWSSEDCLSRSISLSRKRQFSTVGSLLSQQFPFGYPTQDRRRLVSWGAMEMHNIN 119

Query: 90  ITSA-TFEISKGSSLGQEKACKSQRVCHKSTQFEDNMCHEENPRSIYINDPRKTNDKYEF 148
             +  +FE+S+     QEK  K+QR  HKS  FEDN+ H++NPRSIYINDPR+TNDKYEF
Sbjct: 120 DNNPESFELSRV----QEKLHKAQRSRHKSMVFEDNLQHDDNPRSIYINDPRRTNDKYEF 175

Query: 149 TGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVL 208
           TGNEI TSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVL
Sbjct: 176 TGNEITTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVL 235

Query: 209 FVTAIKDGYEDWRRHRSDRNENNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDV 268
            VTAIKDGYEDWRRHRSDRNENN++ALV QSD F LK WK IRAGEVVKIC+D+ IPCD+
Sbjct: 236 CVTAIKDGYEDWRRHRSDRNENNKQALVFQSDDFRLKVWKKIRAGEVVKICADEVIPCDM 295

Query: 269 VLLGTSDPSGIAYIQTMNLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEF 328
           VLLGTSDPSG+AYIQTMNLDGESNLKTRYARQETAS V EG   SG I+CEQPNRN+YEF
Sbjct: 296 VLLGTSDPSGLAYIQTMNLDGESNLKTRYARQETASAVAEGCSYSGLIRCEQPNRNIYEF 355

Query: 329 TANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAASPSKRSRLEN 388
           TANMEFN  KFPLSQSNIVLRGCQLKNT+WIIGVVVYAGQETKAMLNSA SP+KRS+LE 
Sbjct: 356 TANMEFNNHKFPLSQSNIVLRGCQLKNTEWIIGVVVYAGQETKAMLNSAMSPAKRSKLEG 415

Query: 389 YMNRETLWLSIFLLVMCLVVALGMGLWLLRYKDRLDTLPYYRKLYFTNGKNNHKNLNIMG 448
           YMNRETLWLSIFL +MCLVVALGMG WL+R+K+RLDTLPYYRK YFTNG +N K     G
Sbjct: 416 YMNRETLWLSIFLFIMCLVVALGMGSWLVRHKERLDTLPYYRKRYFTNGADNGKRYRFYG 475

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449449958\|ref\|XP_004142731.1\| PREDICTED: phospholipid-transporting ATPase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255575596\|ref\|XP_002528698.1\| phospholipid-transporting atpase, putative [Ricinus communis] gi\|223531870\|gb\|EEF33687.1\| phospholipid-transporting atpase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356566785\|ref\|XP_003551608.1\| PREDICTED: phospholipid-transporting ATPase 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|224091124\|ref\|XP_002309187.1\| aminophospholipid ATPase [Populus trichocarpa] gi\|222855163\|gb\|EEE92710.1\| aminophospholipid ATPase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356530169\|ref\|XP_003533656.1\| PREDICTED: phospholipid-transporting ATPase 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|359481230\|ref\|XP_002268006.2\| PREDICTED: phospholipid-transporting ATPase 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224140613\|ref\|XP_002323676.1\| aminophospholipid ATPase [Populus trichocarpa] gi\|222868306\|gb\|EEF05437.1\| aminophospholipid ATPase [Populus trichocarpa]	Back alignment and taxonomy information

>gi|108708007|gb|ABF95802.1| phospholipid-translocating P-type ATPase, flippase family protein, expressed [Oryza sativa Japonica Group] gi|108708008|gb|ABF95803.1| phospholipid-translocating P-type ATPase, flippase family protein, expressed [Oryza sativa Japonica Group] gi|108708009|gb|ABF95804.1| phospholipid-translocating P-type ATPase, flippase family protein, expressed [Oryza sativa Japonica Group] gi|108708010|gb|ABF95805.1| phospholipid-translocating P-type ATPase, flippase family protein, expressed [Oryza sativa Japonica Group]

Back alignment and taxonomy information

>gi\|242041031\|ref\|XP_002467910.1\| hypothetical protein SORBIDRAFT_01g036200 [Sorghum bicolor] gi\|241921764\|gb\|EER94908.1\| hypothetical protein SORBIDRAFT_01g036200 [Sorghum bicolor]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		457
TAIR\|locus:3355727		1158	ALA1 "aminophospholipid ATPase	0.807	0.318	0.526	1.8e-101
FB\|FBgn0032120		1517	CG33298 [Drosophila melanogast	0.671	0.202	0.387	1e-57
ZFIN\|ZDB-GENE-101102-1		1524	atp10a "ATPase, class V, type	0.691	0.207	0.393	1.1e-56
UNIPROTKB\|F1MZ89		1499	Bt.13793 "Uncharacterized prot	0.595	0.181	0.433	1.4e-56
UNIPROTKB\|Q6PEW3		535	ATP10D "Probable phospholipid-	0.599	0.512	0.420	2.5e-56
MGI\|MGI:1330809		1508	Atp10a "ATPase, class V, type	0.595	0.180	0.425	2.9e-56
RGD\|1588541		1364	Atp10d "ATPase, class V, type	0.606	0.203	0.430	4.8e-56
UNIPROTKB\|F1LRP2		1508	Atp10a "Protein Atp10a" [Rattu	0.595	0.180	0.422	6e-56
UNIPROTKB\|F1S3S6		1424	ATP10D "Uncharacterized protei	0.610	0.195	0.420	6.8e-56
UNIPROTKB\|F1NMP8		1333	ATP10D "Uncharacterized protei	0.663	0.227	0.388	1.2e-55

TAIR\|locus:3355727 ALA1 "aminophospholipid ATPase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
 Identities = 200/380 (52%), Positives = 261/380 (68%)

Query:    85 LGNSNITSATFEISKGSSLGQEKACKSQRVCHKSTQFEDNMCH-------EENPRSIYIN 137
             LG S+  S + + +K  + G      S+R+ H S   +  M         +E+ R IYIN
Sbjct:    17 LGVSSRWSVSSKDNKEVTFGD---LGSKRIRHGSAGADSEMLSMSQKEIKDEDARLIYIN 73

Query:   138 DPRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGR 197
             DP +TN+++EFTGN I+T+KY++ TFLP+NLF QFHRVAY+YFL IA LNQLP LAVFGR
Sbjct:    74 DPDRTNERFEFTGNSIKTAKYSVFTFLPRNLFEQFHRVAYIYFLVIAVLNQLPQLAVFGR 133

Query:   198 TXXXXXXXXXXXXTAIKDGYEDWRRHRSDRNENNREALVLQSDQFHLKKWKNIRAGEVVK 257
                          +AIKD YED+RRHRSDR ENNR ALV +  QF  KKWK+IR GEV+K
Sbjct:   134 GASIMPLAFVLLVSAIKDAYEDFRRHRSDRVENNRLALVFEDHQFREKKWKHIRVGEVIK 193

Query:   258 ICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKTRYARQETASTVFEGSIVSGTIK 317
             + S+ T+PCD+VLL TSDP+G+ Y+QT NLDGESNLKTRYA+QET     +    +G IK
Sbjct:   194 VQSNQTLPCDMVLLATSDPTGVVYVQTTNLDGESNLKTRYAKQETLLKAADMESFNGFIK 253

Query:   318 CEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSA 377
             CE+PNRN+Y F ANME +G++  L  SNI+LRGC+LKNT W +GVVVYAG ETKAMLN++
Sbjct:   254 CEKPNRNIYGFQANMEIDGRRLSLGPSNIILRGCELKNTAWALGVVVYAGGETKAMLNNS 313

Query:   378 ASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGLWLLRYKDRLDTLPYYRKLYFTNG 437
              +PSKRSRLE  MN E + LS+FL+V+C + A    +WL  ++D LDT+ +YR+  ++  
Sbjct:   314 GAPSKRSRLETRMNLEIILLSLFLIVLCTIAAATAAVWLRTHRDDLDTILFYRRKDYSE- 372

Query:   438 KNNHKNLNIMGSLWRLFSLF 457
             +   KN    G  W +F  F
Sbjct:   373 RPGGKNYKYYGWGWEIFFTF 392

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0015662 "ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism" evidence=IEA;ISS

GO:0015914 "phospholipid transport" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

FB\|FBgn0032120 CG33298 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-101102-1 atp10a "ATPase, class V, type 10A" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MZ89 Bt.13793 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6PEW3 ATP10D "Probable phospholipid-transporting ATPase VD" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1330809 Atp10a "ATPase, class V, type 10A" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1588541 Atp10d "ATPase, class V, type 10D" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1LRP2 Atp10a "Protein Atp10a" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S3S6 ATP10D "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NMP8 ATP10D "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00060954	aminophospholipid ATPase (1294 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		457
PLN03190		1178	PLN03190, PLN03190, aminophospholipid translocase;	1e-165
TIGR01652		1057	TIGR01652, ATPase-Plipid, phospholipid-translocati	1e-116
TIGR01494		543	TIGR01494, ATPase_P-type, ATPase, P-type (transpor	3e-35
COG0474		917	COG0474, MgtA, Cation transport ATPase [Inorganic	2e-26
pfam00122		222	pfam00122, E1-E2_ATPase, E1-E2 ATPase	7e-10

>gnl\|CDD\|215623 PLN03190, PLN03190, aminophospholipid translocase; Provisional	Back alignment and domain information

 Score =  496 bits (1278), Expect = e-165
 Identities = 213/392 (54%), Positives = 279/392 (71%), Gaps = 10/392 (2%)

Query: 73  PVKKSLHLVSMELGNSNITSATFEISKGSSLGQEKACKSQRVCHKSTQFEDNM------- 125
           P++K        LG+S+  S + + S+           S+ V H S   +  M       
Sbjct: 6   PIEKPPSH-EPILGSSSRRSVSSKDSRSVREVTFGDLGSRPVRHGSRGADSEMFSMSQKE 64

Query: 126 CHEENPRSIYINDPRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAA 185
             +E+ R +Y+NDP K+N+++EF GN IRT+KY++ +FLP+NLF QFHRVAY+YFL IA 
Sbjct: 65  ISDEDARLVYLNDPEKSNERFEFAGNSIRTAKYSVFSFLPRNLFEQFHRVAYIYFLVIAV 124

Query: 186 LNQLPPLAVFGRTVSLFPLLFVLFVTAIKDGYEDWRRHRSDRNENNREALVLQSDQFHLK 245
           LNQLP LAVFGR  S+ PL FVL VTA+KD YEDWRRHRSDR ENNR A VL  DQF  K
Sbjct: 125 LNQLPQLAVFGRGASILPLAFVLLVTAVKDAYEDWRRHRSDRIENNRLAWVLVDDQFQEK 184

Query: 246 KWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKTRYARQETAST 305
           KWK+IR GE++KI ++DT+PCD+VLL TSDP+G+AY+QT+NLDGESNLKTRYA+QET S 
Sbjct: 185 KWKDIRVGEIIKIQANDTLPCDMVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETLSK 244

Query: 306 VFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVY 365
           + E   ++G IKCE+PNRN+Y F ANME +G++  L  SNI+LRGC+LKNT W IGV VY
Sbjct: 245 IPEKEKINGLIKCEKPNRNIYGFQANMEVDGKRLSLGPSNIILRGCELKNTAWAIGVAVY 304

Query: 366 AGQETKAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGLWLLRYKDRLDT 425
            G+ETKAMLN++ +PSKRSRLE  MN E + LS+FL+ +C +V++   +WL R++D LDT
Sbjct: 305 CGRETKAMLNNSGAPSKRSRLETRMNLEIIILSLFLIALCTIVSVCAAVWLRRHRDELDT 364

Query: 426 LPYYRKLYFTNGKNNHKNLNIMGSLWRLFSLF 457
           +P+YR+  F+ G    KN N  G  W +F  F
Sbjct: 365 IPFYRRKDFSEGGP--KNYNYYGWGWEIFFTF 394

Length = 1178

>gnl\|CDD\|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase, flippase	Back alignment and domain information

>gnl\|CDD\|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD superfamily, subfamily IC	Back alignment and domain information

>gnl\|CDD\|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		457
PLN03190		1178	aminophospholipid translocase; Provisional	100.0
KOG0206		1151	consensus P-type ATPase [General function predicti	100.0
TIGR01652		1057	ATPase-Plipid phospholipid-translocating P-type AT	100.0
KOG0210		1051	consensus P-type ATPase [Inorganic ion transport a	100.0
TIGR01106		997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	99.97
TIGR01517		941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	99.96
TIGR01523		1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	99.96
COG0474		917	MgtA Cation transport ATPase [Inorganic ion transp	99.96
PRK10517		902	magnesium-transporting ATPase MgtA; Provisional	99.96
TIGR01647		755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	99.96
TIGR01522		884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	99.96
TIGR01524		867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	99.96
TIGR01116		917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	99.95
KOG0202		972	consensus Ca2+ transporting ATPase [Inorganic ion	99.95
PF00122		230	E1-E2_ATPase: E1-E2 ATPase p-type cation-transport	99.94
TIGR01657		1054	P-ATPase-V P-type ATPase of unknown pump specifici	99.94
PRK15122		903	magnesium-transporting ATPase; Provisional	99.94
KOG0204		1034	consensus Calcium transporting ATPase [Inorganic i	99.91
KOG0205		942	consensus Plasma membrane H+-transporting ATPase [	99.86
TIGR01512		536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	99.86
KOG0208		1140	consensus Cation transport ATPase [Inorganic ion t	99.85
PRK01122		679	potassium-transporting ATPase subunit B; Provision	99.85
PRK14010		673	potassium-transporting ATPase subunit B; Provision	99.84
TIGR01525		556	ATPase-IB_hvy heavy metal translocating P-type ATP	99.84
KOG0203		1019	consensus Na+/K+ ATPase, alpha subunit [Inorganic	99.83
PRK11033		741	zntA zinc/cadmium/mercury/lead-transporting ATPase	99.83
TIGR01494		499	ATPase_P-type ATPase, P-type (transporting), HAD s	99.82
TIGR01497		675	kdpB K+-transporting ATPase, B subunit. One sequen	99.82
TIGR01511		562	ATPase-IB1_Cu copper-(or silver)-translocating P-t	99.82
PRK10671		834	copA copper exporting ATPase; Provisional	99.79
COG2217		713	ZntA Cation transport ATPase [Inorganic ion transp	99.75
KOG0209		1160	consensus P-type ATPase [Inorganic ion transport a	99.71
KOG0207		951	consensus Cation transport ATPase [Inorganic ion t	99.62
COG2216		681	KdpB High-affinity K+ transport system, ATPase cha	99.12
smart00831		64	Cation_ATPase_N Cation transporter/ATPase, N-termi	96.86
PF00690		69	Cation_ATPase_N: Cation transporter/ATPase, N-term	96.62
KOG0210		1051	consensus P-type ATPase [Inorganic ion transport a	88.76

>PLN03190 aminophospholipid translocase; Provisional	Back alignment and domain information

Probab=100.00  E-value=4.3e-62  Score=560.24  Aligned_cols=303  Identities=63%  Similarity=1.109  Sum_probs=277.2

Q ss_pred             CCCCeEEEeCCCccccccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCccccCccchhhhHHHH
Q 035626          128 EENPRSIYINDPRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFV  207 (457)
Q Consensus       128 ~~~~r~i~~n~~~~~~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~is~~~~~~~~~pLl~v  207 (457)
                      ..+.|.|++|++...+.+.+|++|.|+|+|||+|+|||++||+||++++|+|||+++|+|++|.+++.+++++++||++|
T Consensus        67 ~~~~r~i~~~~~~~~~~~~~f~~N~i~TsKYt~~tFlP~~L~eQF~r~aN~YFL~I~ilq~ip~~s~~~~~t~~~PL~~v  146 (1178)
T PLN03190         67 DEDARLVYLNDPEKSNERFEFAGNSIRTAKYSVFSFLPRNLFEQFHRVAYIYFLVIAVLNQLPQLAVFGRGASILPLAFV  146 (1178)
T ss_pred             cCCceEEEcCCCCcccccccCCCCeeeccccccHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCcccCCcchHHHHHHHH
Confidence            45689999998754444567999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccccccceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccc
Q 035626          208 LFVTAIKDGYEDWRRHRSDRNENNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNL  287 (457)
Q Consensus       208 l~is~ike~~ed~kr~k~d~~iN~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~L  287 (457)
                      ++++++++++||++|+++|+++|+++++|+++|++++++|++|+|||||+|++||.+|||++||++++++|.|+|||++|
T Consensus       147 l~v~~ike~~Ed~~r~k~d~~~N~~~~~v~~~~~~~~i~~~~i~vGDiv~v~~ge~iPaD~~ll~Ss~~~G~~~Vdts~L  226 (1178)
T PLN03190        147 LLVTAVKDAYEDWRRHRSDRIENNRLAWVLVDDQFQEKKWKDIRVGEIIKIQANDTLPCDMVLLSTSDPTGVAYVQTINL  226 (1178)
T ss_pred             HHHHHHHHHHHHHHHHHhHHhhcCcEEEEEECCeEEEEeHHHCCCCCEEEECCCCEeeeeEEEEeccCCCceEEEEcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEec
Q 035626          288 DGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAG  367 (457)
Q Consensus       288 dGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG  367 (457)
                      ||||+||.|.+.+.+.........++|.|+||.||+++|.|.|++.++++..+++.+|+|+|||.|+||+|++|+|||||
T Consensus       227 dGEt~~k~k~~~~~~~~~~~~~~~~~~~i~~e~Pn~~l~~F~G~i~~~~~~~~l~~~n~llRG~~LrnT~~i~GvVVYTG  306 (1178)
T PLN03190        227 DGESNLKTRYAKQETLSKIPEKEKINGLIKCEKPNRNIYGFQANMEVDGKRLSLGPSNIILRGCELKNTAWAIGVAVYCG  306 (1178)
T ss_pred             CCeeeeeEecccchhhhcchhhhhceEEEEEeCCCccceeEEEEEEECCCcccCCccceeeccceecCCceEEEEEEEec
Confidence            99999999998766531111125678999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccceee
Q 035626          368 QETKAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGLWLLRYKDRLDTLPYYR  430 (457)
Q Consensus       368 ~dTKi~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~~~~~~~~~~~~~~~wy~  430 (457)
                      +|||+++|...++.|+|++|+++|+++++++++++++|++++++..+|..+..+..++.+||+
T Consensus       307 ~dTK~~~N~~~~~~K~S~le~~~N~~vi~l~~i~~~l~~i~~i~~~~~~~~~~~~~~yl~~~~  369 (1178)
T PLN03190        307 RETKAMLNNSGAPSKRSRLETRMNLEIIILSLFLIALCTIVSVCAAVWLRRHRDELDTIPFYR  369 (1178)
T ss_pred             hhhhHhhcCCCCCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccc
Confidence            999999999999999999999999999999999999999999999888765433222334554

>KOG0206 consensus P-type ATPase [General function prediction only]	Back alignment and domain information

>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase	Back alignment and domain information

>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit	Back alignment and domain information

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase	Back alignment and domain information

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type	Back alignment and domain information

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK10517 magnesium-transporting ATPase MgtA; Provisional	Back alignment and domain information

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase	Back alignment and domain information

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase	Back alignment and domain information

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase	Back alignment and domain information

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase	Back alignment and domain information

>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)	Back alignment and domain information

>PRK15122 magnesium-transporting ATPase; Provisional	Back alignment and domain information

>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase	Back alignment and domain information

>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK01122 potassium-transporting ATPase subunit B; Provisional	Back alignment and domain information

>PRK14010 potassium-transporting ATPase subunit B; Provisional	Back alignment and domain information

>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase	Back alignment and domain information

>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional	Back alignment and domain information

>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC	Back alignment and domain information

>TIGR01497 kdpB K+-transporting ATPase, B subunit	Back alignment and domain information

>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase	Back alignment and domain information

>PRK10671 copA copper exporting ATPase; Provisional	Back alignment and domain information

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]	Back alignment and domain information

>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus	Back alignment and domain information

>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		457
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 37/265 (13%), Positives = 80/265 (30%), Gaps = 80/265 (30%)

Query: 58  ATVDPLLPKEISLACPVKKSLHLVSMELGNSNITSATFEI----------------SKGS 101
           ++++ L P E       +K    +S+   +++I +    +                    
Sbjct: 361 SSLNVLEPAEY------RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 102 SLGQEKACKSQRVCHKSTQFEDNMCHEENPRSIYINDPRKTNDKYEFTGNEIRTSKYTLI 161
           SL +++  +S      S    +     EN  +++    R   D Y           +   
Sbjct: 415 SLVEKQPKESTISIP-SIYL-ELKVKLENEYALH----RSIVDHYNI------PKTFDSD 462

Query: 162 TFLPKNLFIQFHRVAYLY-FLA--IAALNQLPPLAVFGRTVSLFPLLFV--LFVTA--IK 214
             +P  L        Y Y  +   +  +            ++LF ++F+   F+      
Sbjct: 463 DLIPPYLD------QYFYSHIGHHLKNIEH-------PERMTLFRMVFLDFRFLEQKIRH 509

Query: 215 DGY---------------EDWRRHRSDRNENNREALVLQSDQFHLKKWKNIRAGEVVKIC 259
           D                 + ++ +  D N+   E LV     F L      +  E + IC
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICD-NDPKYERLVNAILDF-LP-----KIEENL-IC 561

Query: 260 SDDTIPCDVVLLGTSDPSGIAYIQT 284
           S  T   D++ +         + + 
Sbjct: 562 SKYT---DLLRIALMAEDEAIFEEA 583

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		457
3ixz_A		1034	Potassium-transporting ATPase alpha; ION pump, H+,	99.97
2zxe_A		1028	Na, K-ATPase alpha subunit; membrane protein, ION	99.97
3ar4_A		995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	99.97
1mhs_A		920	Proton pump, plasma membrane ATPase; ION transport	99.96
3b8c_A		885	ATPase 2, plasma membrane-type; P-type ATPase, pro	99.92
3j08_A		645	COPA, copper-exporting P-type ATPase A; copper tra	99.9
3j09_A		723	COPA, copper-exporting P-type ATPase A; copper tra	99.9
3rfu_A		736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	99.88
2hc8_A		113	PACS, cation-transporting ATPase, P-type; copper,	99.81
2kij_A		124	Copper-transporting ATPase 1; actuator, menkes dis	99.73

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A	Back alignment and structure

Probab=99.97  E-value=2e-31  Score=305.17  Aligned_cols=233  Identities=15%  Similarity=0.132  Sum_probs=190.4

Q ss_pred             CccccccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCC--------ccccCccchhhhHHHHHHH
Q 035626          139 PRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPP--------LAVFGRTVSLFPLLFVLFV  210 (457)
Q Consensus       139 ~~~~~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~--------is~~~~~~~~~pLl~vl~i  210 (457)
                      .+.++++.+||+|.+...|...+   ++.|++||.++++++++++++++++..        +.....+...+++++++++
T Consensus        76 ~ea~~rl~~~G~N~l~~~~~~~~---~~~~~~q~~~~~~~il~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i  152 (1034)
T 3ixz_A           76 SLAAELLLRDGPNALRPPRGTPE---YVKFARQLAGGLQCLMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVV  152 (1034)
T ss_pred             HHHHHHHHhhCCCCCCCCCCCCH---HHHHHHHHhChHHHHHHHHHHHHHHHHHHhhccCCCccccchhhhhhhheeeeH
Confidence            34556788999999998776443   245789999999999999888887631        1112345667888999999


Q ss_pred             HHHHHHHHHHHHhhcccccc---cceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccc
Q 035626          211 TAIKDGYEDWRRHRSDRNEN---NREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNL  287 (457)
Q Consensus       211 s~ike~~ed~kr~k~d~~iN---~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~L  287 (457)
                      +++.+++++++..++.++++   +.+++|+|||++++|+|++|+|||||.|++||.||||++||++++    +.||||+|
T Consensus       153 ~~~~~~~qe~ka~~al~~L~~l~~~~a~ViRdG~~~~I~~~eLv~GDiV~l~~Gd~VPAD~~ll~~~~----l~VdES~L  228 (1034)
T 3ixz_A          153 TGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQG----RKVDNSSL  228 (1034)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEEEHHHCCCCcEEEEcCCceecCCeEEEEeCC----ceEEeccc
Confidence            99999999999998766544   678999999999999999999999999999999999999999887    89999999


Q ss_pred             cCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEec
Q 035626          288 DGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAG  367 (457)
Q Consensus       288 dGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG  367 (457)
                      ||||.|+.|.+....                                   ..++...|++|.||.+. .|.+.|+|++||
T Consensus       229 TGES~pv~K~~~~~~-----------------------------------~~~~~~~n~~f~GT~v~-~G~~~~vVv~tG  272 (1034)
T 3ixz_A          229 TGESEPQTRSPECTH-----------------------------------ESPLETRNIAFFSTMCL-EGTAQGLVVNTG  272 (1034)
T ss_pred             CCCCCCeeccCCCcc-----------------------------------ccccccccceecceeEE-eecceEEEEeeh
Confidence            999999999764221                                   12345567777777777 468999999999


Q ss_pred             chh---HHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626          368 QET---KAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGL  414 (457)
Q Consensus       368 ~dT---Ki~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~~  414 (457)
                      .+|   |++.+....+.+++++++.+++++.+++.+.+++|++.++++.+
T Consensus       273 ~~T~~GkI~~~~~~~~~~~tpl~~~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (1034)
T 3ixz_A          273 DRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAMC  322 (1034)
T ss_pred             hhhHhhHHHHhhcccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999   66667777788899999999999999988888888777766543

PyMOL of 3ixz

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A	Back alignment and structure

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...	Back alignment and structure

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1	Back alignment and structure

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}	Back alignment and structure

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}	Back alignment and structure

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}	Back alignment and structure

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}	Back alignment and structure

>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F	Back alignment and structure

>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		457
d1wpga1		115	Calcium ATPase, transduction domain A {Rabbit (Ory	99.82
d1wpga4		472	Calcium ATPase, transmembrane domain M {Rabbit (Or	97.59

>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Calcium ATPase, transduction domain A
family: Calcium ATPase, transduction domain A
domain: Calcium ATPase, transduction domain A
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.82  E-value=1.1e-20  Score=161.28  Aligned_cols=108  Identities=19%  Similarity=0.282  Sum_probs=86.4

Q ss_pred             eeEEEeCCEE--EEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccccCCCccccccccccccccccccc
Q 035626          233 EALVLQSDQF--HLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKTRYARQETASTVFEGS  310 (457)
Q Consensus       233 ~~~Vlr~g~~--~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~LdGES~pk~K~~~~~t~l~~~~~~  310 (457)
                      .++|+|+|++  ++|++++|+|||||.|+.|+.+|||++||....  +.++||||+||||+.|+.|.+.+...       
T Consensus         2 ~~kV~R~g~~~v~~I~~~eLv~GDiv~l~~G~~vPaD~~ll~~~~--~~l~vdes~lTGEs~pv~K~~~~~~~-------   72 (115)
T d1wpga1           2 MGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKS--TTLRVDQSILTGESVSVIKHTEPVPD-------   72 (115)
T ss_dssp             EEEEEBSSCSSCEEEEGGGCCTTCEEEEETTCBCCSEEEEEEECS--SCCEEECHHHHSCCSCEECCCSCCCC-------
T ss_pred             ceEEEECCCceEEEEeHHHCCCCCEEEECCCCEEeeceEEEEeec--cceEEEEeecccceEEEEeecccccc-------
Confidence            5789999874  789999999999999999999999999997532  33899999999999999997643310       


Q ss_pred             ccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEecchhHHHHh
Q 035626          311 IVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLN  375 (457)
Q Consensus       311 ~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG~dTKi~~n  375 (457)
                                               ......+..|++|.||.+. .|+++|+|++||.+|.+.+.
T Consensus        73 -------------------------~~~~~~~~~n~lf~GT~V~-~G~~~~~V~~tG~~T~~G~i  111 (115)
T d1wpga1          73 -------------------------PRAVNQDKKNMLFSGTNIA-AGKALGIVATTGVSTEIGKI  111 (115)
T ss_dssp             -------------------------TTCCGGGCTTEECTTCEEE-ECEEEEEEEECGGGSHHHHH
T ss_pred             -------------------------cccccccccceEEeccEEE-eeeEEEEEEEEccccHHHHH
Confidence                                     0111234568888888887 57999999999999966543

PyMOL of d1wpga1

>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure