Citrus Sinensis ID: 035639

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
MFFMYISGENKAGNPELIQKVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGTLLGGLLFKIAGYDCGKLPVILNSSQ
cEEEEEccccccccHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccc
cEEEEcccccccccHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHccccccccccEEEcccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccccccEEEEEEcccc
MFFMYisgenkagnpELIQKVLEKYAKVlppffldivqrsdvstlhwaplmfrhpwnvffgnlskgnvtvagdamhpmtpelgqggcQALEDAVVLGRHIGNLLIktkghiattgdnnVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGTLLGGLLFKiagydcgklpvilnssq
MFFMYISgenkagnpELIQKVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTkghiattgdnnvAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGTLLGGLLFKIAGYDCGKLPVILNSSQ
MFFMYISGENKAGNPELIQKVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSgwlqiggtllggllFKIAGYDCGKLPVILNSSQ
**FMYI*******NPELIQKVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGTLLGGLLFKIAGYDCGKLPVIL****
MFFMYI*GEN****PELIQKVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKT*********NNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGTLLGGLLFKIAGYDCGK**VI*****
MFFMYISGENKAGNPELIQKVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGTLLGGLLFKIAGYDCGKLPVILNSSQ
MFFMYISGENKAGNPELIQKVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKG***TTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGTLLGGLLFKIAGYDCGKLPVILNS**
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFFMYISGENKAGNPELIQKVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGTLLGGLLFKIAGYDCGKLPVILNSSQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query177 2.2.26 [Sep-21-2011]
A6T923384 FAD-dependent urate hydro yes no 0.378 0.174 0.4 3e-07
B6D1N4384 FAD-dependent urate hydro yes no 0.378 0.174 0.4 5e-07
B5B0J6384 FAD-dependent urate hydro yes no 0.378 0.174 0.4 8e-07
Q9FGC7 667 Zeaxanthin epoxidase, chl no no 0.378 0.100 0.371 3e-06
Q40412 663 Zeaxanthin epoxidase, chl N/A no 0.497 0.132 0.326 4e-06
Q0JCU7 659 Zeaxanthin epoxidase, chl no no 0.531 0.142 0.339 8e-06
O81360 661 Zeaxanthin epoxidase, chl N/A no 0.502 0.134 0.320 8e-06
Q96375 660 Zeaxanthin epoxidase, chl N/A no 0.497 0.133 0.346 1e-05
Q88FY2382 6-hydroxynicotinate 3-mon yes no 0.474 0.219 0.323 2e-05
P93236 669 Zeaxanthin epoxidase, chl N/A no 0.497 0.131 0.326 6e-05
>sp|A6T923|HPXO_KLEP7 FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hpxO PE=1 SV=1 Back     alignment and function desciption
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 13/80 (16%)

Query: 60  FGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNV 119
           F  L +G V + GDA H  TP++GQGGC A+EDAVVL    G +  +T+         ++
Sbjct: 272 FSRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVL----GAVFRQTR---------DI 318

Query: 120 AQAIDGYVKERKWRVTGLVI 139
           A A+  Y  +R  RV  LV+
Sbjct: 319 AAALREYEAQRCDRVRDLVL 338
Catalyzes the hydroxylation of uric acid to 5-hydroxyisourate.
Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) (taxid: 272620)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: 3
>sp|B6D1N4|HPXO_KLEPN FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae GN=hpxO PE=3 SV=1 Back     alignment and function description
>sp|B5B0J6|HPXO_KLEOX FAD-dependent urate hydroxylase OS=Klebsiella oxytoca GN=hpxO PE=3 SV=1 Back     alignment and function description
>sp|Q9FGC7|ZEP_ARATH Zeaxanthin epoxidase, chloroplastic OS=Arabidopsis thaliana GN=ZEP PE=1 SV=1 Back     alignment and function description
>sp|Q40412|ABA2_NICPL Zeaxanthin epoxidase, chloroplastic OS=Nicotiana plumbaginifolia GN=ABA2 PE=1 SV=1 Back     alignment and function description
>sp|Q0JCU7|ZEP_ORYSJ Zeaxanthin epoxidase, chloroplastic OS=Oryza sativa subsp. japonica GN=ZEP PE=2 SV=1 Back     alignment and function description
>sp|O81360|ABA2_PRUAR Zeaxanthin epoxidase, chloroplastic OS=Prunus armeniaca PE=2 SV=1 Back     alignment and function description
>sp|Q96375|ABA2_CAPAN Zeaxanthin epoxidase, chloroplastic OS=Capsicum annuum PE=2 SV=1 Back     alignment and function description
>sp|Q88FY2|6HN3M_PSEPK 6-hydroxynicotinate 3-monooxygenase OS=Pseudomonas putida (strain KT2440) GN=nicC PE=1 SV=1 Back     alignment and function description
>sp|P93236|ABA2_SOLLC Zeaxanthin epoxidase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query177
255578418 412 monoxygenase, putative [Ricinus communis 0.909 0.390 0.577 1e-51
255578424 462 monoxygenase, putative [Ricinus communis 0.932 0.357 0.565 3e-51
224056051 404 predicted protein [Populus trichocarpa] 0.977 0.428 0.523 2e-49
224126917 417 predicted protein [Populus trichocarpa] 0.949 0.402 0.553 2e-48
359477074 413 PREDICTED: 3-hydroxybenzoate 6-hydroxyla 0.943 0.404 0.532 4e-47
224105743 414 predicted protein [Populus trichocarpa] 0.949 0.405 0.543 3e-46
359477076 408 PREDICTED: 3-hydroxybenzoate 6-hydroxyla 0.977 0.424 0.510 8e-46
225431405 411 PREDICTED: 3-hydroxybenzoate 6-hydroxyla 0.977 0.420 0.515 5e-45
255578420 408 monoxygenase, putative [Ricinus communis 0.932 0.404 0.5 3e-42
224105749 394 predicted protein [Populus trichocarpa] 0.920 0.413 0.508 2e-41
>gi|255578418|ref|XP_002530074.1| monoxygenase, putative [Ricinus communis] gi|223530427|gb|EEF32314.1| monoxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/180 (57%), Positives = 128/180 (71%), Gaps = 19/180 (10%)

Query: 6   ISGENKAGNPELIQK-VLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLS 64
           + GE+   +PELIQK V++KYAK  P  FLD+V+ +D+ST+ WAPLM RHPWNV FGNLS
Sbjct: 223 LEGESMPRDPELIQKAVIDKYAKYFPSEFLDVVRHADLSTITWAPLMLRHPWNVIFGNLS 282

Query: 65  KGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAID 124
           +G+VTVAGDAMHPMTP+LGQGGC ALEDAVVLGRHIGN  IK    +    + ++ +AID
Sbjct: 283 RGSVTVAGDAMHPMTPDLGQGGCSALEDAVVLGRHIGNSFIKNGRLV----EKDMPRAID 338

Query: 125 GYVKERKWRVTGLVIGSYFSGWLQIGGT----------LLGGLLFK----IAGYDCGKLP 170
           GYVKER+WR  GL+ GSY SGW+Q  G+          +  G LF+       YDCGKLP
Sbjct: 339 GYVKERRWRAAGLITGSYLSGWVQQSGSNWWMKFLRDFIFYGFLFRKVFNSVVYDCGKLP 398

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255578424|ref|XP_002530077.1| monoxygenase, putative [Ricinus communis] gi|223530430|gb|EEF32317.1| monoxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224056051|ref|XP_002298720.1| predicted protein [Populus trichocarpa] gi|222845978|gb|EEE83525.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224126917|ref|XP_002329505.1| predicted protein [Populus trichocarpa] gi|222870185|gb|EEF07316.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359477074|ref|XP_002272352.2| PREDICTED: 3-hydroxybenzoate 6-hydroxylase 1-like [Vitis vinifera] gi|296088638|emb|CBI37629.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224105743|ref|XP_002333773.1| predicted protein [Populus trichocarpa] gi|222838457|gb|EEE76822.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359477076|ref|XP_002272571.2| PREDICTED: 3-hydroxybenzoate 6-hydroxylase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225431405|ref|XP_002272608.1| PREDICTED: 3-hydroxybenzoate 6-hydroxylase 1 [Vitis vinifera] gi|296088643|emb|CBI37634.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255578420|ref|XP_002530075.1| monoxygenase, putative [Ricinus communis] gi|223530428|gb|EEF32315.1| monoxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224105749|ref|XP_002333774.1| predicted protein [Populus trichocarpa] gi|222838458|gb|EEE76823.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query177
TAIR|locus:2153499406 AT5G05320 "AT5G05320" [Arabido 0.785 0.342 0.408 1.5e-22
TAIR|locus:2121254407 AT4G38540 "AT4G38540" [Arabido 0.723 0.314 0.370 2.8e-21
TAIR|locus:2130694422 MO1 "monooxygenase 1" [Arabido 0.807 0.338 0.365 3.7e-17
TAIR|locus:2058723439 CTF2A "AT2G35660" [Arabidopsis 0.638 0.257 0.336 9.4e-12
TAIR|locus:2060584427 CTF2B "AT2G29720" [Arabidopsis 0.621 0.257 0.319 2.3e-10
UNIPROTKB|G4NBV2443 MGG_10792 "Uncharacterized pro 0.468 0.187 0.366 7.7e-08
UNIPROTKB|A6T923384 hpxO "FAD-dependent urate hydr 0.214 0.098 0.605 2.7e-07
UNIPROTKB|B5B0J6384 hpxO "FAD-dependent urate hydr 0.214 0.098 0.631 2.7e-07
UNIPROTKB|B6D1N4384 hpxO "FAD-dependent urate hydr 0.214 0.098 0.605 2.7e-07
UNIPROTKB|Q0JCU7 659 ZEP "Zeaxanthin epoxidase, chl 0.531 0.142 0.339 1.3e-06
TAIR|locus:2153499 AT5G05320 "AT5G05320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 263 (97.6 bits), Expect = 1.5e-22, P = 1.5e-22
 Identities = 60/147 (40%), Positives = 86/147 (58%)

Query:     2 FFMYISGE-NKAGNPELIQKVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFF 60
             F  + S + +K  + ++ Q VL K  K LP     I++ +D+ +L   PLM+R PW + +
Sbjct:   219 FLTHTSTDLDKKNHQKIKQFVLTKI-KDLPDNIKSILETTDLDSLVMNPLMYRPPWELLW 277

Query:    61 GNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVA 120
              N++K NV VAGDA+HPMTP++GQGGC A+ED V+L R +G  + K K     T D N +
Sbjct:   278 ANIAKDNVCVAGDALHPMTPDIGQGGCSAMEDGVILARCLGEAM-KAKNMKGETEDENES 336

Query:   121 --QAIDG---YVKERKWRVTGLVIGSY 142
               +  DG   Y   RKWR   L+  SY
Sbjct:   337 YRRIEDGLKKYAGSRKWRSIDLITTSY 363
GO:0004497 "monooxygenase activity" evidence=ISS
GO:0005575 "cellular_component" evidence=ND
GO:0008152 "metabolic process" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0009617 "response to bacterium" evidence=RCA
GO:0045087 "innate immune response" evidence=RCA
TAIR|locus:2121254 AT4G38540 "AT4G38540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130694 MO1 "monooxygenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058723 CTF2A "AT2G35660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2060584 CTF2B "AT2G29720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4NBV2 MGG_10792 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|A6T923 hpxO "FAD-dependent urate hydroxylase" [Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (taxid:272620)] Back     alignment and assigned GO terms
UNIPROTKB|B5B0J6 hpxO "FAD-dependent urate hydroxylase" [Klebsiella oxytoca (taxid:571)] Back     alignment and assigned GO terms
UNIPROTKB|B6D1N4 hpxO "FAD-dependent urate hydroxylase" [Klebsiella pneumoniae (taxid:573)] Back     alignment and assigned GO terms
UNIPROTKB|Q0JCU7 ZEP "Zeaxanthin epoxidase, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00012325
hypothetical protein (404 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pg.C_scaffold_21739000001
annotation not avaliable (101 aa)
  •     0.455

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query177
PRK08163396 PRK08163, PRK08163, salicylate hydroxylase; Provis 7e-10
PLN02927 668 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxa 1e-08
COG0654387 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox 1e-08
PRK06847375 PRK06847, PRK06847, hypothetical protein; Provisio 2e-08
PRK06753373 PRK06753, PRK06753, hypothetical protein; Provisio 3e-08
PRK07538413 PRK07538, PRK07538, hypothetical protein; Provisio 9e-06
TIGR03219414 TIGR03219, salicylate_mono, salicylate 1-monooxyge 2e-04
PRK07045388 PRK07045, PRK07045, putative monooxygenase; Review 0.002
>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional Back     alignment and domain information 
 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 22/37 (59%), Positives = 24/37 (64%)

Query: 61  GNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLG 97
              S G VT+ GDA HPMT  + QG C ALEDAV LG
Sbjct: 281 AKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLG 317

Length = 396
>gnl|CDD|178515 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] Back     alignment and domain information
>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase Back     alignment and domain information
>gnl|CDD|136171 PRK07045, PRK07045, putative monooxygenase; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 177
TIGR03219414 salicylate_mono salicylate 1-monooxygenase. Member 99.92
PLN02927 668 antheraxanthin epoxidase/zeaxanthin epoxidase 99.89
PRK06753373 hypothetical protein; Provisional 99.88
PRK06475400 salicylate hydroxylase; Provisional 99.88
PRK07236386 hypothetical protein; Provisional 99.88
PRK06847375 hypothetical protein; Provisional 99.88
PRK07588391 hypothetical protein; Provisional 99.87
PRK08163396 salicylate hydroxylase; Provisional 99.87
PRK05868372 hypothetical protein; Validated 99.86
PRK07538413 hypothetical protein; Provisional 99.85
PRK05714405 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 99.85
TIGR02360390 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. 99.83
PRK07045388 putative monooxygenase; Reviewed 99.83
KOG2614420 consensus Kynurenine 3-monooxygenase and related f 99.83
PRK08132 547 FAD-dependent oxidoreductase; Provisional 99.83
COG0654387 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and 99.82
PRK06996398 hypothetical protein; Provisional 99.82
PRK08849384 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 99.81
PRK06183 538 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va 99.81
PRK08850405 2-octaprenyl-6-methoxyphenol hydroxylase; Validate 99.8
PRK08013400 oxidoreductase; Provisional 99.8
PRK08773392 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 99.8
PRK07364415 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 99.8
PRK08243392 4-hydroxybenzoate 3-monooxygenase; Validated 99.79
PRK06185407 hypothetical protein; Provisional 99.79
PRK06617374 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 99.79
PTZ00367 567 squalene epoxidase; Provisional 99.78
PLN02985514 squalene monooxygenase 99.78
PRK08020391 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin 99.78
PRK06834 488 hypothetical protein; Provisional 99.78
PRK07333403 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio 99.78
PRK07494388 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio 99.77
TIGR01989437 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T 99.77
TIGR01988385 Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub 99.77
PF01494356 FAD_binding_3: FAD binding domain; InterPro: IPR00 99.77
PRK06126 545 hypothetical protein; Provisional 99.76
TIGR01984382 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T 99.76
PRK09126392 hypothetical protein; Provisional 99.76
PRK06184 502 hypothetical protein; Provisional 99.76
PRK08255 765 salicylyl-CoA 5-hydroxylase; Reviewed 99.76
PRK08294 634 phenol 2-monooxygenase; Provisional 99.75
PRK05732395 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 99.74
PRK08244 493 hypothetical protein; Provisional 99.73
PRK07608388 ubiquinone biosynthesis hydroxylase family protein 99.73
PRK07190 487 hypothetical protein; Provisional 99.73
PF08491276 SE: Squalene epoxidase; InterPro: IPR013698 This d 99.48
TIGR02023388 BchP-ChlP geranylgeranyl reductase. This model rep 99.14
TIGR02032295 GG-red-SF geranylgeranyl reductase family. This mo 99.12
KOG3855481 consensus Monooxygenase involved in coenzyme Q (ub 99.08
PRK11445351 putative oxidoreductase; Provisional 99.06
PLN00093450 geranylgeranyl diphosphate reductase; Provisional 99.0
TIGR02028398 ChlP geranylgeranyl reductase. This model represen 98.96
TIGR01790388 carotene-cycl lycopene cyclase family protein. Thi 98.96
TIGR01789370 lycopene_cycl lycopene cyclase. This model represe 98.68
KOG1298509 consensus Squalene monooxygenase [Lipid transport 98.35
PRK10157428 putative oxidoreductase FixC; Provisional 98.28
PRK10015429 oxidoreductase; Provisional 98.11
COG0644396 FixC Dehydrogenases (flavoproteins) [Energy produc 97.91
PLN02697529 lycopene epsilon cyclase 97.38
PF04820454 Trp_halogenase: Tryptophan halogenase; InterPro: I 97.27
PLN02463447 lycopene beta cyclase 96.42
PF05834374 Lycopene_cycl: Lycopene cyclase protein; InterPro: 94.15
>TIGR03219 salicylate_mono salicylate 1-monooxygenase Back     alignment and domain information 
Probab=99.92  E-value=2.6e-24  Score=182.07  Aligned_cols=121  Identities=23%  Similarity=0.250  Sum_probs=103.4

Q ss_pred             HHHHHHHhccCChHHHHHHhhCCCCCcccccccccCCCcccccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHH
Q 035639           19 QKVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGR   98 (177)
Q Consensus        19 ~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~   98 (177)
                      +++++.|. +|+|.++++++.++.  ...+++++.++.+    +|+.|||+|||||||+|+|+.|||+|+||+||.+|++
T Consensus       260 ~~l~~~~~-~~~~~v~~~~~~~~~--~~~~~~~~~~~~~----~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~  332 (414)
T TIGR03219       260 REMLDAFA-GWGDAARALLECIPA--PTLWALHDLAELP----GYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLAR  332 (414)
T ss_pred             HHHHHHhc-CCCHHHHHHHHhCCC--CCceeeeeccccc----ceeeCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHH
Confidence            33888998 999999999998763  3345666655543    8999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Q 035639           99 HIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGTLLG  155 (177)
Q Consensus        99 ~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~  155 (177)
                      +|.....+       ..  +++.+|+.||++|++|+..+++.|+.++.+++..++..
T Consensus       333 ~L~~~~~~-------~~--~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~  380 (414)
T TIGR03219       333 LLGDTELE-------AG--DLPALLEAYDDVRRPRACRVQRTSREAGELYELRDPAV  380 (414)
T ss_pred             HHHhhccC-------cc--hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCChhc
Confidence            99875322       23  78999999999999999999999999999998877664

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information
>PRK06753 hypothetical protein; Provisional Back     alignment and domain information
>PRK06475 salicylate hydroxylase; Provisional Back     alignment and domain information
>PRK07236 hypothetical protein; Provisional Back     alignment and domain information
>PRK06847 hypothetical protein; Provisional Back     alignment and domain information
>PRK07588 hypothetical protein; Provisional Back     alignment and domain information
>PRK08163 salicylate hydroxylase; Provisional Back     alignment and domain information
>PRK05868 hypothetical protein; Validated Back     alignment and domain information
>PRK07538 hypothetical protein; Provisional Back     alignment and domain information
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Back     alignment and domain information
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase Back     alignment and domain information
>PRK07045 putative monooxygenase; Reviewed Back     alignment and domain information
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] Back     alignment and domain information
>PRK08132 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] Back     alignment and domain information
>PRK06996 hypothetical protein; Provisional Back     alignment and domain information
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Back     alignment and domain information
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated Back     alignment and domain information
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated Back     alignment and domain information
>PRK08013 oxidoreductase; Provisional Back     alignment and domain information
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated Back     alignment and domain information
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated Back     alignment and domain information
>PRK06185 hypothetical protein; Provisional Back     alignment and domain information
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PTZ00367 squalene epoxidase; Provisional Back     alignment and domain information
>PLN02985 squalene monooxygenase Back     alignment and domain information
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed Back     alignment and domain information
>PRK06834 hypothetical protein; Provisional Back     alignment and domain information
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 Back     alignment and domain information
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family Back     alignment and domain information
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways Back     alignment and domain information
>PRK06126 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase Back     alignment and domain information
>PRK09126 hypothetical protein; Provisional Back     alignment and domain information
>PRK06184 hypothetical protein; Provisional Back     alignment and domain information
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed Back     alignment and domain information
>PRK08294 phenol 2-monooxygenase; Provisional Back     alignment and domain information
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PRK08244 hypothetical protein; Provisional Back     alignment and domain information
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional Back     alignment and domain information
>PRK07190 hypothetical protein; Provisional Back     alignment and domain information
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria Back     alignment and domain information
>TIGR02023 BchP-ChlP geranylgeranyl reductase Back     alignment and domain information
>TIGR02032 GG-red-SF geranylgeranyl reductase family Back     alignment and domain information
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion] Back     alignment and domain information
>PRK11445 putative oxidoreductase; Provisional Back     alignment and domain information
>PLN00093 geranylgeranyl diphosphate reductase; Provisional Back     alignment and domain information
>TIGR02028 ChlP geranylgeranyl reductase Back     alignment and domain information
>TIGR01790 carotene-cycl lycopene cyclase family protein Back     alignment and domain information
>TIGR01789 lycopene_cycl lycopene cyclase Back     alignment and domain information
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] Back     alignment and domain information
>PRK10157 putative oxidoreductase FixC; Provisional Back     alignment and domain information
>PRK10015 oxidoreductase; Provisional Back     alignment and domain information
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] Back     alignment and domain information
>PLN02697 lycopene epsilon cyclase Back     alignment and domain information
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan Back     alignment and domain information
>PLN02463 lycopene beta cyclase Back     alignment and domain information
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query177
3rp8_A407 Crystal Structure Of Klebsiella Pneumoniae R204q Hp 3e-08
3rp6_A407 Crystal Structure Of Klebsiella Pneumoniae Hpxo Com 7e-08
4hb9_A412 Crystal Structure Of A Putative Fad Containing Mono 2e-04
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo Complexed With Fad Length = 407 Back     alignment and structure 
Iteration: 1

 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 13/80 (16%)
Query: 60  FGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNV 119
           F  L +G V + GDA H  TP++GQGGC A+EDAVVL    G +  +T+         ++
Sbjct: 295 FSRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVL----GAVFRQTR---------DI 341
Query: 120 AQAIDGYVKERKWRVTGLVI 139
           A A+  Y  +R  RV  LV+
Sbjct: 342 AAALREYEAQRCDRVRDLVL 361
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed With Fad Length = 407 Back     alignment and structure
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing Monooxygenase From Photorhabdus Luminescens Subsp. Laumondii Tto1 (Target Psi-012791) Length = 412 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query177
3rp8_A407 Flavoprotein monooxygenase; FAD-binding protein, o 7e-21
3alj_A379 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; 2e-20
2vou_A397 2,6-dihydroxypyridine hydroxylase; oxidoreductase, 5e-19
3c96_A410 Flavin-containing monooxygenase; FAD, oxidoreducta 5e-19
2xdo_A398 TETX2 protein; tetracycline degradation, tigecycli 4e-15
3c4a_A381 Probable tryptophan hydroxylase VIOD; alpha-beta p 1e-11
3ihm_A430 Styrene monooxygenase A; rossman fold, anti-parall 3e-07
1k0i_A394 P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h 6e-05
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407 Back     alignment and structure
 Score = 87.3 bits (217), Expect = 7e-21
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 17/113 (15%)

Query: 35  DIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAV 94
            ++   D  T +   +    P++       +G V + GDA H  TP++GQGGC A+EDAV
Sbjct: 274 KLIAALDPQTTNRIEIHDIEPFSRL----VRGRVALLGDAGHSTTPDIGQGGCAAMEDAV 329

Query: 95  VLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWL 147
           VLG                    ++A A+  Y  +R  RV  LV+ +     +
Sbjct: 330 VLGAVFRQ-------------TRDIAAALREYEAQRCDRVRDLVLKARKRCDI 369
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379 Back     alignment and structure
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397 Back     alignment and structure
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410 Back     alignment and structure
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398 Back     alignment and structure
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381 Back     alignment and structure
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430 Back     alignment and structure
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query177
4hb9_A412 Similarities with probable monooxygenase; flavin, 99.92
3rp8_A407 Flavoprotein monooxygenase; FAD-binding protein, o 99.87
2vou_A397 2,6-dihydroxypyridine hydroxylase; oxidoreductase, 99.85
2xdo_A398 TETX2 protein; tetracycline degradation, tigecycli 99.85
2x3n_A399 Probable FAD-dependent monooxygenase; oxidoreducta 99.82
3c4a_A381 Probable tryptophan hydroxylase VIOD; alpha-beta p 99.8
3c96_A410 Flavin-containing monooxygenase; FAD, oxidoreducta 99.78
1pn0_A 665 Phenol 2-monooxygenase; two dimers, TLS refinement 99.75
2qa2_A 499 CABE, polyketide oxygenase CABE; FAD, angucycline, 99.74
2qa1_A 500 PGAE, polyketide oxygenase PGAE; FAD, angucycline, 99.74
3fmw_A 570 Oxygenase; mithramycin, baeyer-villiger, flavin bi 99.73
3alj_A379 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; 99.72
1k0i_A394 P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h 99.71
2dkh_A 639 3-hydroxybenzoate hydroxylase; flavoprotein, monoo 99.71
2r0c_A 549 REBC; flavin adenine dinucleotide, monooxygenase, 99.7
3ihg_A 535 RDME; flavoenzyme, anthracycline, polyketide biosy 99.7
3ihm_A430 Styrene monooxygenase A; rossman fold, anti-parall 99.68
3e1t_A 512 Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro 99.56
3atr_A453 Conserved archaeal protein; saturating double bond 99.54
3oz2_A397 Digeranylgeranylglycerophospholipid reductase; str 99.54
3cgv_A397 Geranylgeranyl reductase related protein; NP_39399 99.49
2gmh_A 584 Electron transfer flavoprotein-ubiquinone oxidored 99.44
3i3l_A 591 Alkylhalidase CMLS; flavin-dependent halogenase, c 99.38
2pyx_A526 Tryptophan halogenase; structural genomics, JOI fo 99.32
2aqj_A 538 Tryptophan halogenase, pRNA; flavin-dependent halo 99.29
2weu_A511 Tryptophan 5-halogenase; regioselectivity, antifun 99.27
2e4g_A550 Tryptophan halogenase; flavin-binding, rebeccamyci 99.24
3nix_A421 Flavoprotein/dehydrogenase; structural genomics, P 99.21
2bry_A497 NEDD9 interacting protein with calponin homology a 98.82
3kkj_A336 Amine oxidase, flavin-containing; oxidoreductase, 97.33
1yvv_A336 Amine oxidase, flavin-containing; oxidoreductase, 96.12
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} Back     alignment and structure
Probab=99.92  E-value=1.7e-24  Score=178.98  Aligned_cols=127  Identities=24%  Similarity=0.241  Sum_probs=106.2

Q ss_pred             CHHHHHH-HHHHHhccCChHHHHHHhhCCCCCcccccccccCCCcccccCccCCcEEEeccCCCcCCCCcchhhhhHHHH
Q 035639           14 NPELIQK-VLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALED   92 (177)
Q Consensus        14 ~~~~~~~-~~~~~~~~~~p~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~D   92 (177)
                      +.+...+ +++.+. +|.|.++.+++.++...+..+.++..++..    +|..|||+|||||||+|+|+.|||+|+||+|
T Consensus       263 ~~~~~~~~~~~~~~-~~~p~~~~li~~~~~~~~~~~~~~~~~~~~----~~~~grv~LiGDAAH~~~P~~GqG~n~ai~D  337 (412)
T 4hb9_A          263 SAEALCDLVQSRMI-SWDPSLHTLVQQSDMENISPLHLRSMPHLL----PWKSSTVTLLGDAIHNMTPMTGSGANTALRD  337 (412)
T ss_dssp             CHHHHHHHHHHHTT-TSCHHHHHHHHTSCTTCCEEEEEEECCCCC----CCCCCSEEECTHHHHCSSCCSSSHHHHHHHH
T ss_pred             chHHHHHHHHHHhc-cCChHHHHHHHhcccceeccchhccccccc----cccccCEEEEEcccccCCCchhhHHHHHHHH
Confidence            4566677 888888 999999999999886666666666655543    7999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcchH
Q 035639           93 AVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGW--LQIGGTLL  154 (177)
Q Consensus        93 A~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~--~~~~~~~~  154 (177)
                      |.+|+++|..+..+       ..  +++.+|+.||++|++++.+++..|++..+  +++...+.
T Consensus       338 A~~La~~L~~~~~~-------~~--~~~~aL~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~  392 (412)
T 4hb9_A          338 ALLLTQKLASVASG-------HE--ELVKAISDYEQQMRAYANEIVGISLRSAQNAVIHFSIPP  392 (412)
T ss_dssp             HHHHHHHHHHHHTT-------SS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--
T ss_pred             HHHHHHHHHHHhcC-------Cc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch
Confidence            99999999998765       24  78899999999999999999999988775  33444443
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Back     alignment and structure
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Back     alignment and structure
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Back     alignment and structure
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Back     alignment and structure
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Back     alignment and structure
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Back     alignment and structure
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Back     alignment and structure
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Back     alignment and structure
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Back     alignment and structure
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Back     alignment and structure
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Back     alignment and structure
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Back     alignment and structure
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Back     alignment and structure
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Back     alignment and structure
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Back     alignment and structure
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Back     alignment and structure
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Back     alignment and structure
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Back     alignment and structure
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} Back     alignment and structure
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Back     alignment and structure
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Back     alignment and structure
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} Back     alignment and structure
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* Back     alignment and structure
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* Back     alignment and structure
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A Back     alignment and structure
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Back     alignment and structure
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Back     alignment and structure
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 177
d3c96a1288 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps 3e-07
d2voua1265 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr 2e-05
d1pn0a1360 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So 2e-04
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.6 bits (109), Expect = 3e-07
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 13/99 (13%)

Query: 43  STLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGN 102
           S +       + P      +  +G +T+ GDA H M P    G  QA+ D + L   +  
Sbjct: 166 SAVRAHLHPDQRPLRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAAL-- 223

Query: 103 LLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGS 141
                        + +VA A+  Y + R+     +++ +
Sbjct: 224 -----------ARNADVAAALREYEEARRPTANKIILAN 251
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265 Back     information, alignment and structure
>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query177
d1pn0a1360 Phenol hydroxylase {Soil-living yeast (Trichosporo 99.77
d3c96a1288 Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 99.48
d2voua1265 Dihydroxypyridine hydroxylase DhpH {Arthrobacter n 98.32
d1k0ia1292 p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a 98.02
d1b5qa1347 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 97.92
d2gmha1380 Electron transfer flavoprotein-ubiquinone oxidored 97.64
d2ivda1347 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 87.17
d3c96a2111 Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 83.92
>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=99.77  E-value=2.3e-19  Score=143.38  Aligned_cols=82  Identities=27%  Similarity=0.298  Sum_probs=73.0

Q ss_pred             ccCcc-CCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 035639           60 FGNLS-KGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLV  138 (177)
Q Consensus        60 ~~~~~-~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~  138 (177)
                      ..+|. .|||+|||||||+|+|+.|||+|+||+||.+|+++|.....+        .  ..+++|+.|+++|++++..++
T Consensus       242 ~~~~~~~grv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~l~~~~~~--------~--~~~~~L~~Y~~~R~~~~~~~~  311 (360)
T d1pn0a1         242 TEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTG--------R--AKRDILKTYEEERQPFAQALI  311 (360)
T ss_dssp             CSCSEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTT--------C--BCGGGGHHHHHHHHHHHHHHH
T ss_pred             hhheeecCcEEEccCcccccccccCCCCcccHHHHHHHHHHHHHHhcC--------C--ChHHHHHHHHHHHHHHHHHHH
Confidence            34676 589999999999999999999999999999999999987653        2  456789999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 035639          139 IGSYFSGWLQIGG  151 (177)
Q Consensus       139 ~~s~~~~~~~~~~  151 (177)
                      ..++.+.+++...
T Consensus       312 ~~s~~~~~~~~~~  324 (360)
T d1pn0a1         312 DFDHQFSRLFSGR  324 (360)
T ss_dssp             HHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHCCC
Confidence            9999999999754
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Back     information, alignment and structure
>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
>d3c96a2 d.16.1.2 (A:183-293) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure