Citrus Sinensis ID: 035650

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
MEVFAKSKAVKLRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRSCYGKYLTASNIPFLLGMTGNKVVQAVPEEKNMDWIFQWEPIRDGFQIKLKSWCGKFLRANGGTPPWRNSLTHDEPHTGSTKNWILWDVESVELPETGSFLEYLSSVSSFSSVSDDVLDVLSDGALGSAPGSPLSAVSPIKRSRFSLLSPNK
ccccccccEEEEEEccccEEEEEcccccEEEcccccccccccEEEEEEEcccccEEEEccccccEEccccccccccccccEEEEcccccccccccEEEEEEEcccEEEEEcccccEEEccccccccccEEEEEcccccccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccEEEEEcccccEEEEcccccEEEEccccccccccEEEEEEEccccccEEEEEcccccEEEcccccccccccccEEEEEccccccccccEEEEEcccccEEEEEEccccEEEcccccccccccEEEEcccccccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
MEVFAKSKAVKLRSHLDkylvadddqervrqsrngassgkkATWIVELVENkgnvirlrscygkyltasnipfllgmtgnkvvqavpeeknmdwifqwepirdgFQIKLKSWCGKFlranggtppwrnslthdephtgstknwilwdvesvelpetgsFLEYLSSvssfssvsddvldvlsdgalgsapgsplsavspikrsrfsllspnk
mevfakskavklrshldkylvadddqervrqsrngassgkkatwivELVENKGNVIRLRSCYGKYLTASNIPFLLGMTGNKVVQAVPEEKNMDWIFQWEPIRDGFQIKLKSWCGKFLRAnggtppwrnslthdephtgstknwILWDVESVELPETGSFLEYLSSVSSFSSVSDDVLDVLSDGALgsapgsplsavspikrsrfsllspnk
MEVFAKSKAVKLRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRSCYGKYLTASNIPFLLGMTGNKVVQAVPEEKNMDWIFQWEPIRDGFQIKLKSWCGKFLRANGGTPPWRNSLTHDEPHTGSTKNWILWDVESVELPETGsfleylssvssfssvsddvldvlsdGALGSAPGSPLSAVSPIKRSRFSLLSPNK
*****************************************ATWIVELVENKGNVIRLRSCYGKYLTASNIPFLLGMTGNKVVQAVPEEKNMDWIFQWEPIRDGFQIKLKSWCGKFLRANGGTPPWRNSL*******GSTKNWILWDVESVELPETGSFLEYLSSVSSF******VLD*********************************
MEVFAKSKAVKLRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRSCYGKYLTASNIPFLLGMTGNKVVQAVPEEKNMDWIFQWEPIRDGFQIKLKSWCGKFLRANGGTPPWRNSLTHDEPHTGSTKNWILWDVESV************************************************************
**********KLRSHLDKYLVADDDQ**************KATWIVELVENKGNVIRLRSCYGKYLTASNIPFLLGMTGNKVVQAVPEEKNMDWIFQWEPIRDGFQIKLKSWCGKFLRANGGTPPWRNSLTHDEPHTGSTKNWILWDVESVELPETGSFLEYLSSVSSFSSVSDDVLDVLSDGALGSAPGSPLSAVSPIKRSR********
*EVFAKSKAVKLRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRSCYGKYLTASNIPFLLGMTGNKVVQAVPEEKNMDWIFQWEPIRDGFQIKLKSWCGKFLRANGGTPPWRNSLTHDEPHTGSTKNWILWDVESVELPET*******************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEVFAKSKAVKLRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRSCYGKYLTASNIPFLLGMTGNKVVQAVPEEKNMDWIFQWEPIRDGFQIKLKSWCGKFLRANGGTPPWRNSLTHDEPHTGSTKNWILWDVESVELPETGSFLEYLSSVSSFSSVSDDVLDVLSDGALGSAPGSPLSAVSPIKRSRFSLLSPNK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query211
224100427226 predicted protein [Populus trichocarpa] 0.976 0.911 0.663 1e-70
224100231228 predicted protein [Populus trichocarpa] 0.971 0.899 0.582 4e-65
255558272208 conserved hypothetical protein [Ricinus 0.933 0.947 0.633 4e-65
42562344 519 Actin cross-linking protein [Arabidopsis 0.924 0.375 0.596 5e-59
8778875 553 T7N9.16 [Arabidopsis thaliana] 0.924 0.352 0.596 1e-58
297845474 518 hypothetical protein ARALYDRAFT_472692 [ 0.924 0.376 0.596 2e-58
225424869200 PREDICTED: uncharacterized protein LOC10 0.928 0.98 0.540 8e-55
225452660 549 PREDICTED: uncharacterized protein LOC10 0.895 0.344 0.553 4e-54
147774254 549 hypothetical protein VITISV_040519 [Viti 0.890 0.342 0.556 6e-54
449458119 483 PREDICTED: uncharacterized protein LOC10 0.867 0.378 0.546 6e-54
>gi|224100427|ref|XP_002311872.1| predicted protein [Populus trichocarpa] gi|222851692|gb|EEE89239.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 138/208 (66%), Positives = 166/208 (79%), Gaps = 2/208 (0%)

Query: 1   MEVFAKSKAVKLRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRS 60
           ME F K+KAVKLRSHL+KYL+AD+D E  RQ+R+G SS K A W VELV+ K +VIRL+S
Sbjct: 1   MEFFTKTKAVKLRSHLEKYLIADEDLETARQTRHG-SSRKAAIWFVELVDEKSHVIRLKS 59

Query: 61  CYGKYLTASNIPFLLGMTGNKVVQAVPEEKNMD-WIFQWEPIRDGFQIKLKSWCGKFLRA 119
           CYG+YLTAS++PFLLGMTG KV+Q    E N D W  +WEPIRDGFQ+KLKSWCGKFLRA
Sbjct: 60  CYGRYLTASDMPFLLGMTGKKVIQTELSENNFDNWKLEWEPIRDGFQVKLKSWCGKFLRA 119

Query: 120 NGGTPPWRNSLTHDEPHTGSTKNWILWDVESVELPETGSFLEYLSSVSSFSSVSDDVLDV 179
           NGGTPPWRNS+THDEPHTGST+ WILWD+E+V+     S  +YLSS+SSFS+VSDDVLD 
Sbjct: 120 NGGTPPWRNSVTHDEPHTGSTRKWILWDIEAVQEIGNDSLKDYLSSMSSFSTVSDDVLDA 179

Query: 180 LSDGALGSAPGSPLSAVSPIKRSRFSLL 207
           +SD   GS  GSP+S VS  +  R +L+
Sbjct: 180 ISDDYKGSEAGSPISVVSSGRTPRLTLV 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224100231|ref|XP_002311796.1| predicted protein [Populus trichocarpa] gi|222851616|gb|EEE89163.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255558272|ref|XP_002520163.1| conserved hypothetical protein [Ricinus communis] gi|223540655|gb|EEF42218.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|42562344|ref|NP_174030.2| Actin cross-linking protein [Arabidopsis thaliana] gi|110737362|dbj|BAF00626.1| hypothetical protein [Arabidopsis thaliana] gi|190016000|gb|ACE62888.1| At1g27100 [Arabidopsis thaliana] gi|332192658|gb|AEE30779.1| Actin cross-linking protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|8778875|gb|AAF79874.1|AC000348_27 T7N9.16 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297845474|ref|XP_002890618.1| hypothetical protein ARALYDRAFT_472692 [Arabidopsis lyrata subsp. lyrata] gi|297336460|gb|EFH66877.1| hypothetical protein ARALYDRAFT_472692 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225424869|ref|XP_002269009.1| PREDICTED: uncharacterized protein LOC100263972 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225452660|ref|XP_002276619.1| PREDICTED: uncharacterized protein LOC100267969 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147774254|emb|CAN76953.1| hypothetical protein VITISV_040519 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449458119|ref|XP_004146795.1| PREDICTED: uncharacterized protein LOC101219104 [Cucumis sativus] gi|449505707|ref|XP_004162546.1| PREDICTED: uncharacterized protein LOC101228132 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query211
TAIR|locus:2205744 519 AT1G27100 "AT1G27100" [Arabido 0.710 0.289 0.664 3.3e-57
TAIR|locus:2025876300 AT1G59710 "AT1G59710" [Arabido 0.706 0.496 0.575 7.1e-45
TAIR|locus:2095547335 AT3G28630 "AT3G28630" [Arabido 0.696 0.438 0.552 1.5e-44
TAIR|locus:1006230249292 AT3G01311 "AT3G01311" [Arabido 0.701 0.506 0.532 5.3e-40
TAIR|locus:2196764 397 AT1G69900 "AT1G69900" [Arabido 0.720 0.382 0.532 1.3e-38
TAIR|locus:2196774279 AT1G69890 "AT1G69890" [Arabido 0.691 0.523 0.549 5.5e-38
TAIR|locus:2205744 AT1G27100 "AT1G27100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 559 (201.8 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
 Identities = 101/152 (66%), Positives = 119/152 (78%)

Query:     1 MEVFAKSKAVKLRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRS 60
             ME+F K   VKLRSHLDK+LVADDDQE +RQSR G    ++A W VE V +K N+IRL+S
Sbjct:     1 MELFTKGNNVKLRSHLDKFLVADDDQETIRQSRKG--DARRAVWTVEPVVDKPNLIRLKS 58

Query:    61 CYGKYLTASNIPFLLGMTGNKVVQAVPEEKNMDWIFQWEPIRDGFQIKLKSWCGKFLRAN 120
              +G YLTASN P LLGMTG KV Q     K MDW  QWEP RDGFQ+KLKSWCGK++RAN
Sbjct:    59 SHGTYLTASNKPLLLGMTGEKVTQTASFNKLMDWQTQWEPERDGFQVKLKSWCGKWMRAN 118

Query:   121 GGTPPWRNSLTHDEPHTGSTKNWILWDVESVE 152
             GGTPPWRNS+THDEPHT  TKNW++WDV +++
Sbjct:   119 GGTPPWRNSVTHDEPHTSKTKNWLIWDVITID 150
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005773 "vacuole" evidence=IDA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
TAIR|locus:2025876 AT1G59710 "AT1G59710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095547 AT3G28630 "AT3G28630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230249 AT3G01311 "AT3G01311" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196764 AT1G69900 "AT1G69900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196774 AT1G69890 "AT1G69890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00082008
hypothetical protein (226 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
pfam04601142 pfam04601, DUF569, Protein of unknown function (DU 1e-80
>gnl|CDD|113374 pfam04601, DUF569, Protein of unknown function (DUF569) Back     alignment and domain information 
 Score =  236 bits (604), Expect = 1e-80
 Identities = 91/146 (62%), Positives = 111/146 (76%), Gaps = 4/146 (2%)

Query: 1   MEVFAKSKAVKLRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRS 60
           ME+F K+KAV+LRSH DKYLVAD+D+E V QSRNG+S  K+A W VE V     VIRL+S
Sbjct: 1   MEIFNKAKAVRLRSHHDKYLVADEDEETVTQSRNGSS--KRARWTVEPVPGSPKVIRLKS 58

Query: 61  CYGKYLTASNIPFLLGMTGNKVVQAVPEEKNMDWIFQWEPIRDGFQIKLKSWCGKFLRAN 120
           CYGKYLTASN PFLLG TG KV Q  P    +D   +WEP+R+G Q+KLK+  G +LRAN
Sbjct: 59  CYGKYLTASNEPFLLGATGKKVTQTKP--FRLDSSTEWEPVREGSQVKLKTRYGNYLRAN 116

Query: 121 GGTPPWRNSLTHDEPHTGSTKNWILW 146
           GG PPWRNS+THD PH  +T++W+LW
Sbjct: 117 GGLPPWRNSVTHDIPHRSATQDWVLW 142

Family of hypothetical proteins. Some family members contain a two copies of the region. Length = 142

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 211
PF04601142 DUF569: Protein of unknown function (DUF569); Inte 100.0
cd00257119 Fascin Fascin-like domain; members include actin-b 99.26
PF06268111 Fascin: Fascin domain; InterPro: IPR022768 This fa 98.66
PF04601142 DUF569: Protein of unknown function (DUF569); Inte 98.57
cd00257119 Fascin Fascin-like domain; members include actin-b 98.53
PF06268111 Fascin: Fascin domain; InterPro: IPR022768 This fa 98.02
PF06229191 FRG1: FRG1-like family; InterPro: IPR010414 This e 97.73
PF06229191 FRG1: FRG1-like family; InterPro: IPR010414 This e 97.53
PF00167122 FGF: Fibroblast growth factor; InterPro: IPR002348 96.52
KOG3962246 consensus Predicted actin-bundling protein [Cytosk 95.77
cd00058123 FGF Acidic and basic fibroblast growth factor fami 95.3
smart00442126 FGF Acidic and basic fibroblast growth factor fami 95.25
PF14200105 RicinB_lectin_2: Ricin-type beta-trefoil lectin do 95.05
smart0047257 MIR Domain in ryanodine and inositol trisphosphate 93.88
smart00791139 Agglutinin Amaranthus caudatus agglutinin or amara 93.33
PF00167122 FGF: Fibroblast growth factor; InterPro: IPR002348 92.94
PF07468153 Agglutinin: Agglutinin; InterPro: IPR008998 Agglut 92.62
PF05270142 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterP 91.6
KOG3359 723 consensus Dolichyl-phosphate-mannose:protein O-man 91.09
smart00791139 Agglutinin Amaranthus caudatus agglutinin or amara 90.68
cd00058123 FGF Acidic and basic fibroblast growth factor fami 90.39
smart0047257 MIR Domain in ryanodine and inositol trisphosphate 89.03
PF14200105 RicinB_lectin_2: Ricin-type beta-trefoil lectin do 87.9
smart00442126 FGF Acidic and basic fibroblast growth factor fami 84.98
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins Back     alignment and domain information 
Probab=100.00  E-value=2.1e-62  Score=400.88  Aligned_cols=142  Identities=55%  Similarity=0.962  Sum_probs=137.0

Q ss_pred             CCCCCCCCEEEEeecCCceEEeeCCCCcEEEcCCCCCCCCcceeEEEEEecCCceEEEcccCCCccccCCCCCCCCCCcc
Q 035650            1 MEVFAKSKAVKLRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRSCYGKYLTASNIPFLLGMTGN   80 (211)
Q Consensus         1 ME~F~d~~~VRLRS~~gkYL~ADeDG~~Vs~~~~~~~s~~~a~W~Ve~~~~~~~~v~LqSayGRYL~as~~~~~lG~~G~   80 (211)
                      ||+|+|++||||||++||||+|||||++|+|+++++ ++| |+|+||+++++.++|+|||||||||+||+.+|++||+|+
T Consensus         1 Me~F~d~~~VRLRS~~~kYL~ADeDg~~Vs~~~~~~-s~n-a~W~Ve~v~~~~~~v~L~saYGrYL~as~~~~~lG~~G~   78 (142)
T PF04601_consen    1 MEFFPDGKHVRLRSHHGKYLHADEDGEGVSQDRRGA-SLN-AAWTVERVPGSPNYVRLRSAYGRYLAASDEPALLGHTGR   78 (142)
T ss_pred             CCccCCCCEEEEEecCCCEEEEcCCCCeEEECCCCC-CCc-ceEEEEEecCCCCEEEEeeccCceEeccCCcCCCCCCCC
Confidence            999999999999999999999999999999999999 999 999999998778999999999999999999999999999


Q ss_pred             eEEeecCCccCCCCceeeEEEecCCEEEEeccCCceeeeCCCCCCCCceeEeeCCCCCCccceEEE
Q 035650           81 KVVQAVPEEKNMDWIFQWEPIRDGFQIKLKSWCGKFLRANGGTPPWRNSLTHDEPHTGSTKNWILW  146 (211)
Q Consensus        81 ~v~Q~~~~~~~d~~~i~Wepir~g~~V~Lr~~~gr~LRANG~~~pWrn~VTvD~~~~~~~~~~m~W  146 (211)
                      +|+|++++++ + +.+|||||++|++|+||+++||||||||++|||||+||||+++++.+++||+|
T Consensus        79 ~v~Q~~~~~~-d-~~~~Wepvr~g~~V~Lr~~~gr~LRANG~~~~Wrn~VT~D~~~~s~~~~wv~w  142 (142)
T PF04601_consen   79 RVVQTDPDRL-D-SSVEWEPVRDGFYVKLRHRSGRYLRANGGYPPWRNSVTVDVPHRSATQDWVLW  142 (142)
T ss_pred             EEEecCCccC-C-CCceEEEecCCCEEEEEecCCceEEcCCCCCCCcceEEecCCCCCeEEEEEEC
Confidence            9999999985 5 79999999999999999999999999999999999999999999888888887

Some family members contain two copies of the region.
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) Back     alignment and domain information
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins Back     alignment and domain information
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins Back     alignment and domain information
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) Back     alignment and domain information
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins Back     alignment and domain information
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD) Back     alignment and domain information
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD) Back     alignment and domain information
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures Back     alignment and domain information
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton] Back     alignment and domain information
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin Back     alignment and domain information
>smart00442 FGF Acidic and basic fibroblast growth factor family Back     alignment and domain information
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A Back     alignment and domain information
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases Back     alignment and domain information
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain Back     alignment and domain information
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures Back     alignment and domain information
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types Back     alignment and domain information
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins Back     alignment and domain information
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain Back     alignment and domain information
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin Back     alignment and domain information
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases Back     alignment and domain information
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A Back     alignment and domain information
>smart00442 FGF Acidic and basic fibroblast growth factor family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
3llp_A 493 Fascin; beta-trefoil, actin bundling protein, canc 8e-14
3llp_A493 Fascin; beta-trefoil, actin bundling protein, canc 3e-04
3llp_A493 Fascin; beta-trefoil, actin bundling protein, canc 8e-04
2yug_A155 Protein FRG1; spliceosome, facioscapulohumeral mus 7e-06
1hcd_A118 Hisactophilin; actin binding; NMR {Dictyostelium d 1e-05
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* Length = 493 Back     alignment and structure
 Score = 68.6 bits (167), Expect = 8e-14
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 21/137 (15%)

Query: 12  LRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKG--NVIRLRSCYGKYLTAS 69
           L +  +KYL A+    +V  + + +S  KK  W +E   ++     + LRS  G+YL A 
Sbjct: 16  LINCGNKYLTAEAFGFKV--NASASSLKKKQIWTLEQPPDEAGSAAVCLRSHLGRYLAAD 73

Query: 70  NIPFLLGMTGNKVVQAVPEEKNMDWIFQWEPIRDGFQIKLKSWC-GKFLRANGGTPPWRN 128
                    GN  V    E    D  F      DG +  L+S    ++           +
Sbjct: 74  K-------DGN--VTCEREVPGPDCRFLIVAHDDG-RWSLQSEAHRRYFGGTE------D 117

Query: 129 SLTHDEPHTGSTKNWIL 145
            L+         + W +
Sbjct: 118 RLSCFAQTVSPAEKWSV 134
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* Length = 493 Back     alignment and structure
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* Length = 493 Back     alignment and structure
>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy, FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR {Mus musculus} Length = 155 Back     alignment and structure
>1hcd_A Hisactophilin; actin binding; NMR {Dictyostelium discoideum} SCOP: b.42.5.2 PDB: 1hce_A Length = 118 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query211
3llp_A 493 Fascin; beta-trefoil, actin bundling protein, canc 99.24
2yug_A155 Protein FRG1; spliceosome, facioscapulohumeral mus 98.58
2yug_A155 Protein FRG1; spliceosome, facioscapulohumeral mus 98.46
3llp_A493 Fascin; beta-trefoil, actin bundling protein, canc 97.96
1t9f_A187 Protein 1D10; structural genomics, PSI, protein st 97.73
3mal_A199 Stromal cell-derived factor 2-like protein; trefoi 97.29
3pg0_A165 Threefoil; symmetric design, beta-trefoil, enginee 96.77
2xoa_A 559 Ryanodine receptor 1; metal transport, calcium cha 96.4
3q7x_A132 De novo designed beta-trefoil architecture with S 96.27
1q1u_A144 FGF-12, fibrobast growth factor homologous factor 95.81
1rg8_A146 Heparin-binding growth factor 1; beta-trefoil, hor 95.78
1bfg_A146 Basic fibroblast growth factor; 1.60A {Homo sapien 95.5
3uj4_A 604 Inositol 1,4,5-trisphosphate receptor type 1; APO- 95.39
1nun_A145 Fibroblast growth factor-10; beta-trefoil fold, im 95.34
1qql_A140 Fibroblast growth factor 7/1 chimera; beta-trefoil 95.32
1ijt_A128 FGF4, fibroblast growth factor 4; B-trefoil fold, 94.98
3p6i_A142 De novo designed beta-trefoil architecture with S 94.82
3snv_A143 Symfoil-4T/permutation #1 synthetic protein; beta- 94.79
3nbc_A148 Ricin B-like lectin; lactose, sugar BIND protein; 94.79
1ihk_A174 GLIA-activating factor; B-trefoil fold, hormone/gr 94.69
3vsf_A526 Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactana 94.55
1jlx_A303 Agglutinin, amaranthin, ACA; complex (lectin/sacch 94.44
3f1r_A211 FGF-20, fibroblast growth factor 20; beta-trefoil 94.42
3p6j_A142 De novo designed beta-trefoil architecture with S 93.99
3p6i_A142 De novo designed beta-trefoil architecture with S 93.91
3hbw_A193 Fibroblast growth factor 13; beta-trefoil fold, al 93.9
2p39_A155 Fibroblast growth factor 23; atypical beta-trefoil 93.89
3q7x_A132 De novo designed beta-trefoil architecture with S 93.85
3ef2_A293 Agglutinin, lectin; beta-trefoil, calcium-binding, 93.65
2fdb_M164 FGF8B, fibroblast growth factor 8 isoform B; beta- 93.58
3kmv_A157 Alpha-L-arabinofuranosidase B; protein:carboydrate 93.58
1t9f_A187 Protein 1D10; structural genomics, PSI, protein st 93.46
2xoa_A 559 Ryanodine receptor 1; metal transport, calcium cha 92.85
3snv_A143 Symfoil-4T/permutation #1 synthetic protein; beta- 92.51
1jlx_A303 Agglutinin, amaranthin, ACA; complex (lectin/sacch 91.83
3uj4_A 604 Inositol 1,4,5-trisphosphate receptor type 1; APO- 91.48
3phz_A286 Ricin B-related lectin; beta trefoil, saccharide b 90.55
1pwa_A162 FGF-19, fibroblast growth factor-19; beta trefoil, 89.98
2p23_A194 FGF-19, fibroblast growth factor 19; atypical beta 89.82
1hcd_A118 Hisactophilin; actin binding; NMR {Dictyostelium d 89.11
3mal_A199 Stromal cell-derived factor 2-like protein; trefoi 88.27
1hcd_A118 Hisactophilin; actin binding; NMR {Dictyostelium d 86.67
3p6j_A142 De novo designed beta-trefoil architecture with S 86.61
3pg0_A165 Threefoil; symmetric design, beta-trefoil, enginee 86.43
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 85.4
2x2s_A153 Agglutinin, agglutinin SSA; fungal lectin, beta-tr 84.44
1pwa_A162 FGF-19, fibroblast growth factor-19; beta trefoil, 84.33
3aj6_A286 Main hemagglutinin component; toxin, beta-trefoil; 82.67
1n4k_A 381 Inositol 1,4,5-trisphosphate receptor type 1; IP3 81.85
2fdb_M164 FGF8B, fibroblast growth factor 8 isoform B; beta- 81.62
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* 4gov_A 4goy_A 4gp3_A 4gp0_A* Back     alignment and structure
Probab=99.24  E-value=7.4e-12  Score=118.59  Aligned_cols=61  Identities=30%  Similarity=0.406  Sum_probs=56.2

Q ss_pred             CCEEEEeecCCceEEeeCCCCcEEEcCCCCCCCCcceeEEEEEecCCceEEEcc-cCCCccccCCCC
Q 035650            7 SKAVKLRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRS-CYGKYLTASNIP   72 (211)
Q Consensus         7 ~~~VRLRS~~gkYL~ADeDG~~Vs~~~~~~~s~~~a~W~Ve~~~~~~~~v~LqS-ayGRYL~as~~~   72 (211)
                      ...|+||||||+||.||+||+ |+|+.+.. +++ ..|.++..+  ++.|.||+ +|||||+++++.
T Consensus        57 ~~~~~lks~~G~yL~~d~~G~-v~~~~~~~-~~~-~~f~~~~~~--dG~w~lq~~~~g~yl~~~~~~  118 (493)
T 3llp_A           57 SAAVCLRSHLGRYLAADKDGN-VTCEREVP-GPD-CRFLIVAHD--DGRWSLQSEAHRRYFGGTEDR  118 (493)
T ss_dssp             CCCBCEECTTSCEEEECTTSC-EEEEESSC-CGG-GCEEEEECT--TSEEEEEETTTCCEEEEEBTE
T ss_pred             ccEEEEecCCCcEeecCCCCc-EEeCcccC-CCC-ceEEEEECC--CCeEEEEEcccCceecCCCce
Confidence            568999999999999999999 99999999 999 999998775  69999999 999999998774
>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy, FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy, FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* 4gov_A 4goy_A 4gp3_A 4gp0_A* Back     alignment and structure
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1 Back     alignment and structure
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0 Back     alignment and structure
>3pg0_A Threefoil; symmetric design, beta-trefoil, engineered module, sugar BIN NOVO protein; HET: BTB GOL; 1.62A {Artificial gene} Back     alignment and structure
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus} Back     alignment and structure
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A Back     alignment and structure
>1q1u_A FGF-12, fibrobast growth factor homologous factor 1, FGF12B; human, hormone/growth factor complex; 1.70A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1rg8_A Heparin-binding growth factor 1; beta-trefoil, hormone/growth factor complex; 1.10A {Homo sapiens} SCOP: b.42.1.1 PDB: 1jqz_A 3fjb_A 1jt3_A 1jt4_A 1jtc_A 3baq_A 3bah_A 3fja_A 3fj9_A 3fjk_A 3hom_A 3fjc_A 3ba5_A 3fjh_A 1jt5_A 1k5v_A 3fjj_A 1jy0_A 3bao_A 3fjf_A ... Back     alignment and structure
>1bfg_A Basic fibroblast growth factor; 1.60A {Homo sapiens} SCOP: b.42.1.1 PDB: 1iil_A 1ii4_A 1bas_A 1bla_A 1bld_A 1bfb_A* 1bfc_A* 4fgf_A 1fga_A 2fgf_A 1ev2_A 1cvs_A 1fq9_A* 1bff_A 2bfh_A Back     alignment and structure
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A* Back     alignment and structure
>1nun_A Fibroblast growth factor-10; beta-trefoil fold, immunoglobulin-like domain, hormone/growth factor/membrane protein complex; HET: 15P; 2.90A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1qql_A Fibroblast growth factor 7/1 chimera; beta-trefoil, hormone/growth factor complex; 2.30A {Rattus norvegicus} SCOP: b.42.1.1 PDB: 1qqk_A Back     alignment and structure
>1ijt_A FGF4, fibroblast growth factor 4; B-trefoil fold, hormone/growth factor complex; 1.80A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>3p6i_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; HET: SO4; 1.32A {Synthetic} PDB: 3ogf_A Back     alignment and structure
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens} Back     alignment and structure
>3nbc_A Ricin B-like lectin; lactose, sugar BIND protein; HET: LAT; 1.01A {Clitocybe nebularis} PDB: 3nbd_A* 3nbe_A* Back     alignment and structure
>1ihk_A GLIA-activating factor; B-trefoil fold, hormone/growth factor complex; 2.20A {Homo sapiens} SCOP: b.42.1.1 PDB: 1g82_A* Back     alignment and structure
>3vsf_A Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactanase, sugar binding protein; 2.76A {Clostridium thermocellum} PDB: 3vsz_A* 3vt0_A* 3vt1_B* 3vt2_A* Back     alignment and structure
>1jlx_A Agglutinin, amaranthin, ACA; complex (lectin/saccharide), T-disaccharide homodimer, bivalent, lectin; HET: GAL A2G; 2.20A {Amaranthus caudatus} SCOP: b.42.3.1 b.42.3.1 PDB: 1jly_A Back     alignment and structure
>3f1r_A FGF-20, fibroblast growth factor 20; beta-trefoil fold, polymorphism, secreted, hormone; 2.50A {Homo sapiens} Back     alignment and structure
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic} Back     alignment and structure
>3p6i_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; HET: SO4; 1.32A {Synthetic} PDB: 3ogf_A Back     alignment and structure
>3hbw_A Fibroblast growth factor 13; beta-trefoil fold, alternative splicing, polymorphism, hormone; 1.90A {Homo sapiens} PDB: 4dck_C Back     alignment and structure
>2p39_A Fibroblast growth factor 23; atypical beta-trefoil fold, signaling protein; HET: SCR; 1.50A {Homo sapiens} Back     alignment and structure
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A Back     alignment and structure
>3ef2_A Agglutinin, lectin; beta-trefoil, calcium-binding, carbohydrate-binding, sugar-binding, sugar binding protein; HET: FUC GAL GLA; 1.80A {Marasmius oreades} PDB: 2iho_A* Back     alignment and structure
>2fdb_M FGF8B, fibroblast growth factor 8 isoform B; beta-trefoil fold, immunoglobulin fold, hormone/growth factor/transferase complex; 2.28A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>3kmv_A Alpha-L-arabinofuranosidase B; protein:carboydrate interactions, carbohydrate-binding modul trefoil fold, CBM42, sugar binding protein; 1.80A {Clostridium thermocellum} Back     alignment and structure
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1 Back     alignment and structure
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus} Back     alignment and structure
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens} Back     alignment and structure
>1jlx_A Agglutinin, amaranthin, ACA; complex (lectin/saccharide), T-disaccharide homodimer, bivalent, lectin; HET: GAL A2G; 2.20A {Amaranthus caudatus} SCOP: b.42.3.1 b.42.3.1 PDB: 1jly_A Back     alignment and structure
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A* Back     alignment and structure
>3phz_A Ricin B-related lectin; beta trefoil, saccharide binding lectin, 2,6-sialyl-lactosam sugar binding protein; HET: NAG GAL SIA; 1.70A {Polyporus squamosus} Back     alignment and structure
>1pwa_A FGF-19, fibroblast growth factor-19; beta trefoil, disulphide bonds, hormone-growth factor comple; 1.30A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>2p23_A FGF-19, fibroblast growth factor 19; atypical beta-trefoil fold, signaling protein; 1.80A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1hcd_A Hisactophilin; actin binding; NMR {Dictyostelium discoideum} SCOP: b.42.5.2 PDB: 1hce_A Back     alignment and structure
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0 Back     alignment and structure
>1hcd_A Hisactophilin; actin binding; NMR {Dictyostelium discoideum} SCOP: b.42.5.2 PDB: 1hce_A Back     alignment and structure
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic} Back     alignment and structure
>3pg0_A Threefoil; symmetric design, beta-trefoil, engineered module, sugar BIN NOVO protein; HET: BTB GOL; 1.62A {Artificial gene} Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Back     alignment and structure
>2x2s_A Agglutinin, agglutinin SSA; fungal lectin, beta-trefoil domain, cell adhesion; 1.60A {Sclerotinia sclerotiorum} PDB: 2x2t_A* Back     alignment and structure
>1pwa_A FGF-19, fibroblast growth factor-19; beta trefoil, disulphide bonds, hormone-growth factor comple; 1.30A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>3aj6_A Main hemagglutinin component; toxin, beta-trefoil; HET: NGA; 1.48A {Clostridium botulinum} PDB: 1qxm_A 3aj5_A* 2ehm_A* 2ehi_A* 2ehn_A* 3ah1_A* 3ah2_A* 3ah4_A* 2e4m_A Back     alignment and structure
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1 Back     alignment and structure
>2fdb_M FGF8B, fibroblast growth factor 8 isoform B; beta-trefoil fold, immunoglobulin fold, hormone/growth factor/transferase complex; 2.28A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 211
d1hcda_118 b.42.5.2 (A:) Histidine-rich actin-binding protein 2e-21
d1hcda_118 b.42.5.2 (A:) Histidine-rich actin-binding protein 4e-05
d1dfca1133 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens 8e-15
d1dfca3123 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens 1e-07
d1dfca3123 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens 1e-04
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} Length = 118 Back     information, alignment and structure

class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Histidine-rich actin-binding protein (hisactophilin)
domain: Histidine-rich actin-binding protein (hisactophilin)
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 83.0 bits (205), Expect = 2e-21
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 19/125 (15%)

Query: 10  VKLRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRSCYGKYLTAS 69
              +SH   +L A+ +   V+             +    VEN G  + L++  GKYL+  
Sbjct: 4   RAFKSHHGHFLSAEGE--AVKTHHGHHDHH--THF---HVENHGGKVALKTHCGKYLSIG 56

Query: 70  NIPFLLGMTGNKVVQAVPEEKNMDWIFQWEPIRDGFQIKLKSWCGKFLRA-NGGTPPWRN 128
           +   +                + D    +     G ++ +K     ++ A + G    + 
Sbjct: 57  DHKQVYLSH----------HLHGDH-SLFHLEHHGGKVSIKGHHHHYISADHHGHVSTKE 105

Query: 129 SLTHD 133
              HD
Sbjct: 106 HHDHD 110
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} Length = 118 Back     information, alignment and structure
>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 133 Back     information, alignment and structure
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 123 Back     information, alignment and structure
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 123 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query211
d1hcda_118 Histidine-rich actin-binding protein (hisactophili 99.49
d1dfca1133 Fascin {Human (Homo sapiens) [TaxId: 9606]} 99.28
d1dfca3123 Fascin {Human (Homo sapiens) [TaxId: 9606]} 99.1
d1dfca3123 Fascin {Human (Homo sapiens) [TaxId: 9606]} 98.69
d1dfca1133 Fascin {Human (Homo sapiens) [TaxId: 9606]} 98.65
d1hcda_118 Histidine-rich actin-binding protein (hisactophili 98.64
d1dfca4111 Fascin {Human (Homo sapiens) [TaxId: 9606]} 97.89
d1t9fa_178 Hypothetical protein R12E2.13 (1D10) {Caenorhabdit 97.72
d1dfca4111 Fascin {Human (Homo sapiens) [TaxId: 9606]} 97.58
d1upsa2131 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 97.56
d1dfca2119 Fascin {Human (Homo sapiens) [TaxId: 9606]} 97.1
d1nuna_139 Fibroblast growth factor-10, FGF10 {Human (Homo sa 96.9
d1q1ua_138 Fibrobast growth factor homologous factor 1 (FHF1b 96.78
d1qqka_132 Keratinocyte growth factor, FGF7 {Rat (Rattus norv 96.55
d1bfga_126 Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 960 96.05
d1ihka_157 Fibroblast growth factor 9, FGF9 {Human (Homo sapi 95.86
d1ijta_128 Fibroblast growth factor 4 (FGF4) {Human (Homo sap 95.69
d1rg8a_141 Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 96 95.46
d1pwaa_136 Fibroblast growth factor-19 (FGF19) {Human (Homo s 95.07
d2fdbm1147 Fibroblast growth factor 8, FGF8 {Human (Homo sapi 94.57
d1jlxa1153 Agglutinin {Love-lies-bleeding (Amaranthus caudatu 93.6
d1t9fa_178 Hypothetical protein R12E2.13 (1D10) {Caenorhabdit 93.03
d1n4ka2200 IP3 receptor type 1 binding core, domain 1 {Mouse 91.98
d1dfca2119 Fascin {Human (Homo sapiens) [TaxId: 9606]} 91.66
d1pwaa_136 Fibroblast growth factor-19 (FGF19) {Human (Homo s 90.45
d2ihoa1154 Agglutinin MOA, N-terminal domain {Fairy-ring mush 90.04
d1bfga_126 Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 960 90.02
d2fdbm1147 Fibroblast growth factor 8, FGF8 {Human (Homo sapi 88.82
d1jlxa1153 Agglutinin {Love-lies-bleeding (Amaranthus caudatu 88.03
d1qxma2138 Hemagglutinin component Ha1 {Clostridium botulinum 86.34
d1sr4a_167 Cytolethal distending toxin subunit A {Haemophilus 85.97
d1jlxa2146 Agglutinin {Love-lies-bleeding (Amaranthus caudatu 83.72
d1rg8a_141 Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 96 81.99
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Histidine-rich actin-binding protein (hisactophilin)
domain: Histidine-rich actin-binding protein (hisactophilin)
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.49  E-value=3.4e-14  Score=109.33  Aligned_cols=100  Identities=18%  Similarity=0.249  Sum_probs=74.9

Q ss_pred             EEEEeecCCceEEeeCCCCcEEEcCCCCCCCCcceeEEEEEecCCceEEEcccCCCccccCCCCCCCCCCcceEEeecCC
Q 035650            9 AVKLRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRSCYGKYLTASNIPFLLGMTGNKVVQAVPE   88 (211)
Q Consensus         9 ~VRLRS~~gkYL~ADeDG~~Vs~~~~~~~s~~~a~W~Ve~~~~~~~~v~LqSayGRYL~as~~~~~lG~~G~~v~Q~~~~   88 (211)
                      -+.||||+||||.||+++  |.+.+..+ ..+ +.|.||..   ++.|.||+++|+||.+.+.       |  .++.+.+
T Consensus         3 ~~~lrs~~gkyL~a~~~~--v~~~~~~~-~~~-~~F~ve~~---~g~iaLks~~GkYlsa~~~-------g--~l~~~~~   66 (118)
T d1hcda_           3 NRAFKSHHGHFLSAEGEA--VKTHHGHH-DHH-THFHVENH---GGKVALKTHCGKYLSIGDH-------K--QVYLSHH   66 (118)
T ss_dssp             CSEEESSTTCEEEEETTE--EEEECSCS-SCC-CCCEEEEE---TTEEEEESSSSCEEEEEET-------T--EEEEECC
T ss_pred             cEEeEcCCCcEEeecCCc--eEeeCCCC-CCC-ceEEEEcC---CCEEEEEeCCCCEEEecCC-------C--cEEEecc
Confidence            368999999999999774  78877777 777 99999975   5899999999999998653       2  2333433


Q ss_pred             ccCCCCceeeEEEecCCEEEEeccCCceeeeC-CCCCCC
Q 035650           89 EKNMDWIFQWEPIRDGFQIKLKSWCGKFLRAN-GGTPPW  126 (211)
Q Consensus        89 ~~~d~~~i~Wepir~g~~V~Lr~~~gr~LRAN-G~~~pW  126 (211)
                      .+.  ..-.|+.++.++.|.|+..+|+||.|. ++..++
T Consensus        67 ~~~--~~E~F~ie~~~g~valrs~nGkylsa~~~g~v~~  103 (118)
T d1hcda_          67 LHG--DHSLFHLEHHGGKVSIKGHHHHYISADHHGHVST  103 (118)
T ss_dssp             CSS--SSSSBEEEEETTEEEEECSTTCEEEECGGGCEEE
T ss_pred             CCC--CceEEEEEECCCEEEEEeCCCCEEEEcCCCceee
Confidence            331  233455667788999999999999995 344333
>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1dfca4 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1dfca4 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upsa2 b.42.2.3 (A:290-420) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1dfca2 b.42.5.1 (A:1141-1259) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nuna_ b.42.1.1 (A:) Fibroblast growth factor-10, FGF10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1ua_ b.42.1.1 (A:) Fibrobast growth factor homologous factor 1 (FHF1b, FGF12b) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqka_ b.42.1.1 (A:) Keratinocyte growth factor, FGF7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1bfga_ b.42.1.1 (A:) Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihka_ b.42.1.1 (A:) Fibroblast growth factor 9, FGF9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijta_ b.42.1.1 (A:) Fibroblast growth factor 4 (FGF4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rg8a_ b.42.1.1 (A:) Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pwaa_ b.42.1.1 (A:) Fibroblast growth factor-19 (FGF19) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdbm1 b.42.1.1 (M:34-180) Fibroblast growth factor 8, FGF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jlxa1 b.42.3.1 (A:1-153) Agglutinin {Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]} Back     information, alignment and structure
>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1n4ka2 b.42.6.1 (A:236-435) IP3 receptor type 1 binding core, domain 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dfca2 b.42.5.1 (A:1141-1259) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pwaa_ b.42.1.1 (A:) Fibroblast growth factor-19 (FGF19) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ihoa1 b.42.2.1 (A:2-155) Agglutinin MOA, N-terminal domain {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]} Back     information, alignment and structure
>d1bfga_ b.42.1.1 (A:) Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdbm1 b.42.1.1 (M:34-180) Fibroblast growth factor 8, FGF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jlxa1 b.42.3.1 (A:1-153) Agglutinin {Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]} Back     information, alignment and structure
>d1qxma2 b.42.2.1 (A:149-286) Hemagglutinin component Ha1 {Clostridium botulinum D phage [TaxId: 29342]} Back     information, alignment and structure
>d1sr4a_ b.42.2.1 (A:) Cytolethal distending toxin subunit A {Haemophilus ducreyi [TaxId: 730]} Back     information, alignment and structure
>d1jlxa2 b.42.3.1 (A:154-299) Agglutinin {Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]} Back     information, alignment and structure
>d1rg8a_ b.42.1.1 (A:) Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure