Citrus Sinensis ID: 035663

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
Protein Sequence
MAPQQLSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPLLLRNLNENCVNRQSCTFFNPKTKKFREIPLPEVKGRWVSCSSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNNI
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHccccccccccEEEccccHHHHHHHHccccccccccccccccccccccccccEEEEEccccccEEEEccccccccEEEEcccccEEEEEEcccccccEEEccccccEEEccccccccccEEEccEEEEEEccccccccEEEEEEccccEEEEEEcccccEEEEEEccccccccccccccccEEEEccEEEEEEEcccEEEEEccccccccEEEcccccccccccccEEEEEEEccEEEEEEEEcccccccccccEEEEEEEEEEcccccEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEccccccccEEEcccccccccEEEcccccEEEEEEcccccccEEEEccccccEEccccccccccccEEEEEEEEEccccccccEEEEEEEccccEEEEEEcccccEEEEccccccccccccccccccEEEEccEEEEEEcccEEEEEEccccccccEEcccccccccccccccEEEEEccccEEEEEEEEEccccccccEEEEEEEEEEcccccEEEEEccc
Coil and Loop (DISEMBL)
mapqqlswsslpDELLSVIIQKLidsddilnCAVCAAVCSSWQSVVKDLYhqirpnlpplllrnlnencvnrqsctffnpktkkfreiplpevkgrwvscsshgwlltvscldetqnmfllhpftrsqvklpppppgtqlqflnglrvitstspldpdcLVLASLYvssklafcrpgdrnwtsivHDQYIrftntsahfydgrncckgyfyclgscnfifrirfdhphaptaeampfkpheyccNARYNYLVELNSDLfivsrfliphksypceltCAFIVCKLDLETEKWIMVNNI
Flexible Loop (DISEMBL)
mapqqlswsslPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPLLLRNLNENCVNRQsctffnpktkkfreiplpevkgrwvsCSSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEkwimvnni
Low Complexity Region (SEG)
MAPQQLSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIrpnlpplllrnlnENCVNRQSCTFFNPKTKKFREIPLPEVKGRWVSCSSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNNI
Disordered region (IsUnstruct)
***********PDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPLLLRNLNENCVNRQSCTFFNPKTKKFREIPLPEVKGRWVSCSSHGWLLTVSCLDETQNMFLLHPF****************QFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMV***
Disordered Region (DISOPRED)
****QLS*SSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPLLLRNLNENCVNRQSCTFFNPKTKKFREIPLPEVKGRWVSCSSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNNI
Disordered Region (DISEMBL)
MAPQQLSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPLLLRNLNENCVNRQSCTFFNPKTKKFREIPLPEVKGRWVSCSSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNNI
Disordered Region (DISPRO)
*****LSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPLLLRNLNENCVNRQSCTFFNPKTKKFREIPLPEVKGRWVSCSSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPQQLSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPLLLRNLNENCVNRQSCTFFNPKTKKFREIPLPEVKGRWVSCSSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNNI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	297	2.2.26 [Sep-21-2011]
Q9FLP7	360	Putative F-box protein At	yes	no	0.861	0.711	0.276	1e-14
Q9LSA5	380	F-box/kelch-repeat protei	no	no	0.838	0.655	0.254	4e-09
Q9XIA2	481	F-box protein At1g49360 O	no	no	0.521	0.322	0.281	3e-07
Q9SUG4	363	Putative F-box protein At	no	no	0.380	0.311	0.340	8e-07
O49647	396	Putative F-box protein At	no	no	0.397	0.297	0.312	9e-06
Q9LS04	362	Putative F-box protein At	no	no	0.872	0.715	0.241	1e-05
O49624	402	Putative F-box protein At	no	no	0.377	0.278	0.333	1e-05
P0CG94	363	Probable F-box protein At	no	no	0.579	0.473	0.248	0.0002
Q9FVS1	352	F-box/kelch-repeat protei	no	no	0.632	0.534	0.262	0.0002
Q1G391	388	F-box protein At4g00893 O	no	no	0.777	0.595	0.215	0.0003

>sp|Q9FLP7|FB294_ARATH Putative F-box protein At5g55150 OS=Arabidopsis thaliana GN=At5g55150 PE=4 SV=2

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 132/315 (41%), Gaps = 59/315 (18%)

Query: 1   MAPQQLSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPL 60
           MA    SWS    ELL+ +   L D+ DILNCA    VCSSW+     +Y+  R   P L
Sbjct: 1   MALPSSSWSEFLPELLNTVFHNLNDARDILNCAT---VCSSWKDSSSAVYYS-RTFSPFL 56

Query: 61  LLRNLNENCVNRQSCTFFNPKTKKFREIPLPEVKGRWVSCSSHGWLLTVSCLDETQNMFL 120
            + +L+ N   R S  F   +     ++     +  WV  S+ G+LLT            
Sbjct: 57  FISHLSSNEEIRFSDQF---RVLSPGKLGFSGNQQAWVCGSTLGFLLT------------ 101

Query: 121 LHPFTRSQVKLPP-----------------PPPGTQLQFLNGLRVITSTSPLDPDCLVLA 163
             P T+S   LPP                 P       F+   + ++STS LD + +VL 
Sbjct: 102 -KPVTKSVTSLPPLISFEDVQRLLQSQAIIPDSEALKNFIK--KAVSSTSLLDDEWVVLV 158

Query: 164 SLYVSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIF--R 221
                 KLAFCR GD+ WT +          + A   D    C G F+ +     I+   
Sbjct: 159 IYNTDRKLAFCRRGDKQWTDL---------ESVASSVDDIVFCNGVFFAIDRLGEIYHCE 209

Query: 222 IRFDHPHA-PTAEAMPFKPHEYCCNARYNYLVELNSD-LFIVSRFLIPHKSYPCELTCAF 279
           +  ++P A P     PF+ ++ C      YL E + D L++V + L  +    C+   +F
Sbjct: 210 LSANNPKATPLCSTSPFR-YDSC----KKYLAESDYDELWVVLKKLELNDD--CDFETSF 262

Query: 280 IVCKLDLETEKWIMV 294
            + + + ET +W  V
Sbjct: 263 EIYEFNRETNEWTKV 277

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSA5|FBK62_ARATH F-box/kelch-repeat protein At3g18720 OS=Arabidopsis thaliana GN=At3g18720 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 112/295 (37%), Gaps = 46/295 (15%)

Query: 11  LPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPLLLRNLNENCV 70
           +P +LL  I+ +L    +I    VC        SV K    Q RP L             
Sbjct: 52  IPTDLLQEILSRLGLKANIHASLVCKTWLKEAVSVRK---FQSRPWL---FYPQSQRGGP 105

Query: 71  NRQSCTFFNPKTKKFREIPLPEVKG--RWVSCSSHGWLLTVSCLDETQNMFLLHPFTRSQ 128
                  FNP   +   +  PE+ G    ++C+  GWLL V   D    +F L+PFT  +
Sbjct: 106 KEGDYVLFNPSRSQTHHLKFPELTGYRNKLACAKDGWLLVVK--DNPDVVFFLNPFTGER 163

Query: 129 VKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVL-----ASLYVSSKLAFCRPGDRNWTS 183
           + LP  P  +    L      TSTS     C V+     + LY   K+   RPG+  WT+
Sbjct: 164 ICLPQVPQNSTRDCLTFSAAPTSTS-----CCVISFTPQSFLYAVVKVDTWRPGESVWTT 218

Query: 184 IVHDQYIRFTNTSAHFYDGRNCC---KGYFYCLGSCNFIFRIRFDHPHAPTAEAMPFKP- 239
              DQ          + +  N C    G FYCL +     R+    P   T   +P KP 
Sbjct: 219 HHFDQ--------KRYGEVINRCIFSNGMFYCLSTSG---RLSVFDPSRETWNVLPVKPC 267

Query: 240 ---HEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKW 291
                     R  ++ E   D+F+V+   + ++          +  KL+L+   W
Sbjct: 268 RAFRRKIMLVRQVFMTEHEGDIFVVTTRRVNNRK--------LLAFKLNLQGNVW 314

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIA2|FB49_ARATH F-box protein At1g49360 OS=Arabidopsis thaliana GN=At1g49360 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 26/181 (14%)

Query: 11  LPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPLLLRNLNENCV 70
           LP +L+ +I+ +L   D+I +  VC A    W  +   +  +++     LL  +  ++  
Sbjct: 111 LPSDLVRLILSRLSFKDNIRSSTVCKA----WGDIAASV--RVKSRRCWLLYHDAFQD-- 162

Query: 71  NRQSCTFFNP-KTKKFREIPLPEV-KGRWVSCSSHGWLLTVSCLDETQNMFLLHPFTRSQ 128
              S  FF+P + KK +E+ LPE+ K   +  S  GWLL    L    +M+  +PFTR +
Sbjct: 163 KGVSYGFFDPVEKKKTKEMNLPELSKSSGILYSKDGWLLMNDSLSLIADMYFFNPFTRER 222

Query: 129 VKLPP----PPPGTQLQFLNGLRVITSTSPLDPDCLVLA----SLYVSSKLAFCRPGDRN 180
           + LP         T   F        S +P    CLV      S  V+ K++  RPG   
Sbjct: 223 IDLPRNRIMESVHTNFAF--------SCAPTKKSCLVFGINNISSSVAIKISTWRPGATT 274

Query: 181 W 181
           W
Sbjct: 275 W 275

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUG4|FB241_ARATH Putative F-box protein At4g22170 OS=Arabidopsis thaliana GN=At4g22170 PE=4 SV=2

 Score = 54.7 bits (130), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 22/135 (16%)

Query: 7   SWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSW-----QSVVKDLYHQIRPNLPPLL 61
           SWS LP +LL+++ ++L       N     +VCSSW     QSV K+  H        L+
Sbjct: 9   SWSDLPHDLLNLVFERL----SFANFNRARSVCSSWYSASRQSVPKNQIHW-------LI 57

Query: 62  LRNLNENCVNRQSCTFFNP--KTKKFREIPLPEVKGRWVSCSSHG-WLLTVSCLDETQNM 118
           L   + N  N  SCT FNP  K K ++   L E   + V  +++G W L V   D   N+
Sbjct: 58  LFPEDNNNKNNSSCTLFNPDEKDKLYKTQHLDEEFAKSVCRATYGSWFLMV---DPLFNL 114

Query: 119 FLLHPFTRSQVKLPP 133
           ++L+ FTR ++ L P
Sbjct: 115 YILNLFTRERINLHP 129

Arabidopsis thaliana (taxid: 3702)

>sp|O49647|FB246_ARATH Putative F-box protein At4g22660 OS=Arabidopsis thaliana GN=At4g22660 PE=4 SV=1

 Score = 51.2 bits (121), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 13/131 (9%)

Query: 7   SWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPLLLRNLN 66
           +WS LP +LL+++ ++L       N     +VCSSW S  K      +  +P L+L   +
Sbjct: 9   TWSDLPLDLLNLVFKRL----SFANFRQAKSVCSSWYSASKQ--SVPKNQIPWLMLFPKD 62

Query: 67  ENCVNRQSCT-FFNPKTKK--FREIPLPEVKGRWVSCSSHG-WLLTVSCLDETQNMFLLH 122
           +N     SCT FFNP+ K   ++   L     + V  +++G WLL     D   N+++L+
Sbjct: 63  KNNNKNSSCTIFFNPEDKDQLYQTQDLGVEFAKSVCLATYGSWLL---MQDSKYNLYILN 119

Query: 123 PFTRSQVKLPP 133
           PFT  ++ LP 
Sbjct: 120 PFTYEKIGLPA 130

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LS04|FB187_ARATH Putative F-box protein At3g25750 OS=Arabidopsis thaliana GN=At3g25750 PE=4 SV=2

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 124/319 (38%), Gaps = 60/319 (18%)

Query: 4   QQLSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPLLLR 63
           ++  WS LP+ELL +I  +   + D+L      + C SW+S V     +++      L  
Sbjct: 2   EKTEWSDLPEELLDLIANRYSSNIDVLR---IRSTCKSWRSAVAMSKERLQFRFERYLPT 58

Query: 64  NLNENCVNRQSCTFFNPKTKKFREIPLPEVKGRWVSCSSHGWLL-TVSCLDETQNMFLLH 122
           +      N++     +P T  F  I LP       SC + GWL+ T       + + LL 
Sbjct: 59  S------NKKIKAHLSPTT--FFRITLPS------SCPNKGWLVRTRQASKMYRKITLLC 104

Query: 123 PF-----TRSQVKLPPPPPGT-------QLQFLNGLRVITSTSPLDPDCL---------V 161
           P      TRS   L     G        ++Q  +GL+      PLD +           +
Sbjct: 105 PLSGERITRSHQTLDLLKVGVSEIRQSYEIQIFDGLK--DEKIPLDSEIFSNYIKNSDKI 162

Query: 162 LASLYVSSKLAFC--RPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFI 219
            +  Y  +K+  C  R G R+WT I  +Q   F++   H         G  Y +     I
Sbjct: 163 PSVNYHDNKIWCCKTREGSRSWTKI-KNQVEDFSDIILHM--------GRIYAVDLKGAI 213

Query: 220 FRIRFDH---PHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELT 276
           + I           ++  + +  ++ C + R   LVE   DL IV    I       + T
Sbjct: 214 WWISLSQLTIVQQTSSTPLDYYKYDSCQDTR---LVEYCGDLCIVHELSITRNH--IQRT 268

Query: 277 CAFIVCKLDLETEKWIMVN 295
             F V K+D +  KW+ V+
Sbjct: 269 VGFKVYKMDEDLAKWVEVS 287

Arabidopsis thaliana (taxid: 3702)

>sp|O49624|FB242_ARATH Putative F-box protein At4g22180 OS=Arabidopsis thaliana GN=At4g22180 PE=4 SV=3

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 20/132 (15%)

Query: 7   SWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPLLLRNLN 66
           SWS LP +LL+ + ++L       N     +VCSSW S  +    Q  P   P L+  L 
Sbjct: 20  SWSELPLDLLTAVFERL----SYANFQRAKSVCSSWHSGSR----QSVPIQIPWLI--LF 69

Query: 67  ENCVNRQSCTFFNPKTK----KFREIPLPEVKGRWVSCSSHG-WLLTVSCLDETQNMFLL 121
               N  SCT FNP+ K    K +++ +   K   V  +++G WLL     D   N+++L
Sbjct: 70  PEYDNNNSCTLFNPEEKGQVYKMKDLGVEFSKS--VCTATYGSWLL---MRDPLYNLYIL 124

Query: 122 HPFTRSQVKLPP 133
           + FT  +V LPP
Sbjct: 125 NLFTHERVNLPP 136

Arabidopsis thaliana (taxid: 3702)

>sp|P0CG94|FB347_ARATH Probable F-box protein At4g22165 OS=Arabidopsis thaliana GN=At4g22165 PE=4 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 33/205 (16%)

Query: 7   SWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLP-PLLLRNL 65
           +WS LP +LL+++ ++L     ++N     +VCS+  SV +    Q  P     LL+   
Sbjct: 9   TWSELPLDLLNLVFKRL----SLVNFQRAKSVCSTRYSVSR----QCVPERQIALLILFP 60

Query: 66  NENCVNRQSCTFFNP--KTKKFREIPLPEVKGRWVSCSSHG-WLLTVSCLDETQNMFLLH 122
            E+  +  +C  FNP  K K ++   L     + V  +++G WLL     D   ++++L+
Sbjct: 61  KEDNTDNSTCKLFNPDEKDKLYKMQDLGVEFAKSVCRATYGSWLL---MQDSKYHLYILN 117

Query: 123 PFTRSQVKLPPPPPGTQL-----------QFLNGLRVITSTSPL------DPDCLVLASL 165
            FTR ++ LPP      +            F +G    + +SP+        D +V+  L
Sbjct: 118 IFTRKRINLPPVESQLGMVKIERTIYDWFHFSHGHYSFSLSSPVFWIDEESKDYIVMWGL 177

Query: 166 YVSSKLAFCRPGDRNWTSIVHDQYI 190
            V   + + + GD +W  I    Y 
Sbjct: 178 GVYC-VVYAKKGDTSWNQIPQTSYF 201

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVS1|FBK23_ARATH F-box/kelch-repeat protein At1g57790 OS=Arabidopsis thaliana GN=At1g57790 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 88/217 (40%), Gaps = 29/217 (13%)

Query: 8   WSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPLLLRNLNE 67
           W  LP ELLS ++  L    +I +    + VC SW      +  ++    P L+     +
Sbjct: 13  WKDLPLELLSSVMTFL----EIKDNVRASVVCKSWFEAAVSV--RVIDKSPWLMYFPETK 66

Query: 68  NCVNRQSCTFFNPKTKKFREIPLPE-VKGRWVSCSSHGWLLTVSCLDETQNMFLLHPFTR 126
           N  +     F++P   K   + LP+ + G  V  S  GWLL     +++ +  L +PFT 
Sbjct: 67  NTYD-----FYDPSNCKKYTMELPKSLVGFIVRYSKDGWLLM--SQEDSSHFVLFNPFTM 119

Query: 127 SQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCR---PGDRNWTS 183
             V LP     T  Q      V  S++P   +C+V             R   PG   WTS
Sbjct: 120 DVVALPFLHLFTYYQL-----VGFSSAPTSSECVVFTIKDYDPGHVTIRTWSPGQTMWTS 174

Query: 184 I-VHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFI 219
           + V  Q++   + +  F        G FYCL   N +
Sbjct: 175 MQVESQFLDVDHNNVVF------SNGVFYCLNQRNHV 205

Arabidopsis thaliana (taxid: 3702)

>sp|Q1G391|FB217_ARATH F-box protein At4g00893 OS=Arabidopsis thaliana GN=At4g00893 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 105/265 (39%), Gaps = 34/265 (12%)

Query: 7   SWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPLLLRNLN 66
           S++ LP  L+  I+  L+  D+I      +A C SW      +  ++    P L+     
Sbjct: 44  SFADLPSSLIEEIMLLLVLKDNIR----ASAACKSWYEAGVSV--RVVDKHPWLMCFPKR 97

Query: 67  ENCVNRQSCTFFNPKTKKFREIPLPEVKGRWVSCSSHGWLLTVSCLDETQNMFLLHPFTR 126
            N        F +P   K   + LPE+    V  S  GWLL       + ++F  +PF+R
Sbjct: 98  GNLFE-----FRDPLHWKLHTLDLPELAESTVCYSRFGWLLMRKA--SSNDVFFFNPFSR 150

Query: 127 SQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSK-----LAFCRPGDRNW 181
             + LP       +  L+  ++  S  P   DC++LA  +V  +     ++ C PG   W
Sbjct: 151 DIISLP-------MCELDFQQIAFSCPPTSDDCVLLAIKFVPGEVNRVTVSTCNPGATKW 203

Query: 182 TSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHAPTAEAMPFK--- 238
            +     ++R     ++    R+     FYC  +   ++     +       A   +   
Sbjct: 204 ITNDFPTFLRLFYMQSNLVYRRD----RFYCFNAEGTLYSFEPSYREWSYICADKLRCPY 259

Query: 239 --PHEYCCNARYNYLVELNSDLFIV 261
              ++Y    +  +LVE   +LF++
Sbjct: 260 VHENQYMWCGKAVFLVEKKGELFVM 284

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
147795390	1290	hypothetical protein VITISV_030993 [Viti	0.905	0.208	0.283	5e-19
255539106	398	ubiquitin-protein ligase, putative [Rici	0.898	0.670	0.270	3e-15
307136306	392	ubiquitin-protein ligase [Cucumis melo s	0.895	0.678	0.283	4e-15
297796387	375	F-box family protein [Arabidopsis lyrata	0.888	0.704	0.282	8e-15
449455577	392	PREDICTED: F-box protein SKIP23-like [Cu	0.895	0.678	0.286	9e-15
356572568	376	PREDICTED: F-box/kelch-repeat protein At	0.649	0.513	0.287	8e-14
255636866	376	unknown [Glycine max]	0.649	0.513	0.287	1e-13
255539088	406	conserved hypothetical protein [Ricinus	0.919	0.672	0.296	3e-13
147838880	530	hypothetical protein VITISV_013184 [Viti	0.579	0.324	0.333	3e-13
22327850	360	uncharacterized protein [Arabidopsis tha	0.861	0.711	0.276	6e-13

>gi|147795390|emb|CAN67605.1| hypothetical protein VITISV_030993 [Vitis vinifera]

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 139/310 (44%), Gaps = 41/310 (13%)

Query: 8    WSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPLLLRNLNE 67
            WS +PD+ L +I +KL   +D +       VC SW S+ +D       +  P L+    E
Sbjct: 922  WSKMPDDPLKLIAEKLHSVEDYVRFG---GVCKSWYSIFEDKECCCPSSKSPWLMLAEKE 978

Query: 68   NCVNRQSCTFFNPKTKKFREIPLPEVKGRWVSCSSHGWLLTVSCLDETQNMFLLHPFTRS 127
            N   R    F++P + K  EI LPEV G+W   S +GWL+T+       +M LL+P TR 
Sbjct: 979  NSEIR---GFYSPLSGKVYEIRLPEVVGKWCWGSPYGWLVTIGT---DLDMCLLNPLTRV 1032

Query: 128  QVKLP-------------PPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFC 174
            Q+ LP                 G++ + +   + + S++P  PDC V+       +LAF 
Sbjct: 1033 QILLPSLRACPNLNTLIDSSTQGSRSKDIFIYKAVLSSAPSSPDCAVMIIYSDYGRLAFT 1092

Query: 175  RPGDRNWTSIVH-----DQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHA 229
            +PG + WT +       D  I F  +    +   N     + C  S + +  IRF    A
Sbjct: 1093 KPGHQTWTLLESESGPVDDIIYFNGS----FLAVNLSWEVWICDISGSQLKTIRF--AAA 1146

Query: 230  PTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFL--IPHKSYPCELTCAFIVCKLDLE 287
            P  + +    +E        YLVE   ++++V+R L     +  P   T  F V KLD+ 
Sbjct: 1147 PALQDVDEIEYE------AKYLVESGGEIYMVTRNLYDTARRDIPYMRTWTFSVLKLDMC 1200

Query: 288  TEKWIMVNNI 297
             ++W  V N+
Sbjct: 1201 NKRWEEVENL 1210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539106|ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 138/336 (41%), Gaps = 69/336 (20%)

Query: 6   LSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPLLLRNL 65
           + WS LP EL+ +I + L    D L      AVC +W+  +    + + P LP L+L   
Sbjct: 3   MDWSQLPPELIEIISKGLTIYSDYL---YSRAVCHAWRFSIPKTPNHLPPQLPWLMLPQS 59

Query: 66  NENCVNRQSCTFFNPKTKKFREIPLPEVKGRWVSC-SSHGWLLTVSCLDETQNMFLLHPF 124
                  +   FF+  T KF  + LPEV  R   C SSHGWL+    LD+T  + L++P 
Sbjct: 60  QSQSNQSRRA-FFSLSTNKFHFLNLPEVSYRKRHCGSSHGWLM---ILDDTPTILLINPL 115

Query: 125 TRSQVKLPP------------PPPGTQLQFLNGL-----------------RVITSTSPL 155
           TR+++ LPP               G +    N L                 +V+ S+SPL
Sbjct: 116 TRAKLSLPPLSSFPNVISFNYSDIGREYALRNLLGERVTVSLRQMRDSFIRKVVLSSSPL 175

Query: 156 -DPDCLVLASLYVSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLG 214
            D + +V+A L  +  LA+CR GD++W+             +  F +      G FY + 
Sbjct: 176 KDNNFVVIAILNQTDDLAYCRNGDKSWS---------LVENARSFCEDVIFVNGMFYAVN 226

Query: 215 SCNFIF--RIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLI------ 266
               I    I  D P     E     P +        YLV    +L +V+R+L       
Sbjct: 227 KAGQIVICDISSDSPRVSFMET----PRQ--AGGDMQYLVNSGDELLLVTRYLDLEYEFD 280

Query: 267 -----PHKSYPCELTCAFIVCKLDLETEKWIMVNNI 297
                PH  Y    T  F V +LD    +W+ ++ +
Sbjct: 281 HPDMEPHLIY---RTIRFEVFRLDWNGPQWLRMSTL 313

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136306|gb|ADN34130.1| ubiquitin-protein ligase [Cucumis melo subsp. melo]

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 136/328 (41%), Gaps = 62/328 (18%)

Query: 8   WSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPLLLRNLNE 67
           W+ LP +LL  I   L    D L   V   VC SW+S V  + H++ P LP L++  L  
Sbjct: 4   WTELPPDLLQQISDYLTVYSDYLRFRV---VCQSWRSSVPKIPHRLPPQLPCLII-PLYH 59

Query: 68  NCVNRQSCTFFNPKTKKFREIPLPEVKGRWVSC-SSHGWLLTVSCLDETQNMFLLHPFTR 126
           +C     C  FN    K   + LPE   R   C SSHGWL   + LDET ++ LL+P TR
Sbjct: 60  DC----RCGLFNFSDNKIHFLYLPEASLRKRPCGSSHGWL---TILDETPSILLLNPLTR 112

Query: 127 SQVKLPP----------------------PPPG-------TQLQFLNGLRVITSTSPLDP 157
           ++ +LPP                       P G        Q++     +++ S+SP + 
Sbjct: 113 AKFRLPPLSTFPNVVSFDYSRVGREYLIRTPTGHIYTRNLRQMRDSFVKKIVLSSSPSNQ 172

Query: 158 -DCLVLASLYVSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC 216
            D L +A L  S  LAFCR G  +WT         F + +    +      G FY +   
Sbjct: 173 NDFLAVAILNHSGDLAFCRSGGGSWT---------FVDDAPSDCEDVIYTDGVFYAVDKY 223

Query: 217 NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFL-IPHKSYPCEL 275
             +  +      +  +        E        YLV L  +L +VSR+L I +     EL
Sbjct: 224 GVVSLMDLRGSRSQVS----LVATERQLAGDIQYLVRLGQELLLVSRYLDIVNDGMDDEL 279

Query: 276 ------TCAFIVCKLDLETEKWIMVNNI 297
                 T  F V +++ E  +W  V N+
Sbjct: 280 ISVMYRTVRFEVFRMEWEGPRWEKVENL 307

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796387|ref|XP_002866078.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297311913|gb|EFH42337.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 142/319 (44%), Gaps = 55/319 (17%)

Query: 1   MAPQQLSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPL 60
           MA    SWS    ELL+ +   L D+ DILNCA    VCSSW+     +Y+  +   P L
Sbjct: 1   MAVSSSSWSEFLPELLNAVFHNLNDARDILNCAT---VCSSWKDSSSAVYYS-KKFAPFL 56

Query: 61  LLRNLNENCVNRQSCTFFNPKTKKFR-----EIPLPEVKGRWVSCSSHGWLLTVSCLDET 115
            + +L+ N    +   FF+    +FR     ++     +  WV  S+ G+LLTV+     
Sbjct: 57  FVSHLSSN----EDIRFFD----QFRVLSPGKLGFSGNQQAWVCGSTLGFLLTVNASFPF 108

Query: 116 QNMFLLHPFTRSQVKLPPPPPGTQLQFL----------NGLR-----VITSTSPLDPDCL 160
           + + L +PFT+S   LPP      +Q L            L+      ++STS LD + +
Sbjct: 109 E-VHLRNPFTKSVTSLPPLISFEDVQRLLQSQAIFPDSEALKNFVKKAVSSTSLLDDEWV 167

Query: 161 VLASLYVSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIF 220
           VL       KLAFCR GD+ WT +          + A   D    C G F+ +     I+
Sbjct: 168 VLVIYNTDRKLAFCRRGDKQWTDL---------ESVASAVDDIVFCNGVFFAIDRFGEIY 218

Query: 221 RIRFDHPHAPTA----EAMPFKPHEYCCNARYNYLVELNSD-LFIVSRFLIPHKSYPCEL 275
                 P++P A     + PF+ ++ C      Y  E + D L++V + L  +    C+ 
Sbjct: 219 HCEL-SPNSPKAIPLCSSSPFR-YDSC----KKYFAESDYDELWVVLKKLELNDD--CDF 270

Query: 276 TCAFIVCKLDLETEKWIMV 294
             +F + + + ET +W  V
Sbjct: 271 ATSFEIYEFNRETNEWTKV 289

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455577|ref|XP_004145529.1| PREDICTED: F-box protein SKIP23-like [Cucumis sativus] gi|449485151|ref|XP_004157083.1| PREDICTED: F-box protein SKIP23-like [Cucumis sativus]

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 137/328 (41%), Gaps = 62/328 (18%)

Query: 8   WSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPLLLRNLNE 67
           W+ LP +LL  I   L    D L   V   VC +W+  V  + H++ P LP L++  L  
Sbjct: 4   WTELPPDLLHQISDYLTVYSDYLRFRV---VCWNWRFSVPKIPHRLPPQLPCLII-PLYH 59

Query: 68  NCVNRQSCTFFNPKTKKFREIPLPEVKGRWVSC-SSHGWLLTVSCLDETQNMFLLHPFTR 126
           NC     C  FN    K   + LPE+  R   C SSHGWL  V   DET  + LL+PFTR
Sbjct: 60  NC----RCGLFNFSDNKIHFLYLPEISLRKRPCGSSHGWLTIV---DETPPILLLNPFTR 112

Query: 127 SQVKLPP----------------------PPPG-------TQLQFLNGLRVITSTSPLDP 157
           +++ LPP                       P G        Q++     +++ S+SP +P
Sbjct: 113 AKLWLPPLSTFPNVVSFDYSRVGREYLIRTPTGHIYTRNLRQMRDSFVKKIVLSSSPSNP 172

Query: 158 -DCLVLASLYVSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC 216
            D L +A L  S  LAFCR G  +WT         F + +    +      G FY +   
Sbjct: 173 NDFLAVAILNHSGDLAFCRSGGGSWT---------FVDDAPSDCEDVIYSDGVFYAVDKY 223

Query: 217 NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFL-IPHKSYPCEL 275
             +  +      +  +        E        YLV+L  +L +VSR+L I +     EL
Sbjct: 224 GVVSLMDLRGSRSQVS----LVATERQLAGDIQYLVKLGQELLLVSRYLDIVNDGMEDEL 279

Query: 276 ------TCAFIVCKLDLETEKWIMVNNI 297
                 T  F V +++ E  +W  V N+
Sbjct: 280 IPVMYRTVRFEVFRMEWEGPRWEKVENL 307

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572568|ref|XP_003554440.1| PREDICTED: F-box/kelch-repeat protein At1g57790-like [Glycine max]

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 100/219 (45%), Gaps = 26/219 (11%)

Query: 4   QQLSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPLLLR 63
           +  SW+ LP ELL  I+ +LI +D+I      +AVC  W SV  D+  ++    P L+  
Sbjct: 32  EMQSWADLPAELLESILSRLILADNIR----ASAVCRRWHSVASDV--RVVNQSPWLMYF 85

Query: 64  NLNENCVNRQSCTFFNPKTKKFREIPLPEVKGRWVSCSSHGWLLTVSCLDETQNMFLLHP 123
               +C       F++P  +K     LPE+ G  V  +  GWLL       T  +F  +P
Sbjct: 86  PKFGDCYE-----FYDPVQRKTHTFELPELNGSRVCYTKDGWLLLYR--PRTHRVFFFNP 138

Query: 124 FTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVS---SKLAFCRPGDRN 180
           FTR  +KLP      Q+       V  S +P  P C++    +VS     ++ C PG   
Sbjct: 139 FTRELIKLPRFEMTYQI-------VAFSCAPTSPGCVLFTVKHVSPTVVAISTCYPGATE 191

Query: 181 WTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFI 219
           WT++ +   + F ++    ++    C G FYCL    ++
Sbjct: 192 WTTVNYQNRLPFVSS---IWNKLVFCNGLFYCLSLTGWL 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636866|gb|ACU18766.1| unknown [Glycine max]

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 100/219 (45%), Gaps = 26/219 (11%)

Query: 4   QQLSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPLLLR 63
           +  SW+ LP ELL  I+ +LI +D+I      +AVC  W SV  D+  ++    P L+  
Sbjct: 32  EMQSWADLPAELLESILSRLILADNIR----ASAVCRRWHSVASDV--RVVNQSPWLMYF 85

Query: 64  NLNENCVNRQSCTFFNPKTKKFREIPLPEVKGRWVSCSSHGWLLTVSCLDETQNMFLLHP 123
               +C       F++P  +K     LPE+ G  V  +  GWLL       T  +F  +P
Sbjct: 86  PKFGDCYE-----FYDPVQRKTHTFELPELNGSRVCYTKDGWLLLYR--PRTHRVFFFNP 138

Query: 124 FTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVS---SKLAFCRPGDRN 180
           FTR  +KLP      Q+       V  S +P  P C++    +VS     ++ C PG   
Sbjct: 139 FTRELIKLPRFEMIYQI-------VAFSCAPTSPGCVLFTVKHVSPTVVAISTCYPGATE 191

Query: 181 WTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFI 219
           WT++ +   + F ++    ++    C G FYCL    ++
Sbjct: 192 WTTVNYQNRLPFVSS---IWNKLVFCNGLFYCLSLTGWL 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539088|ref|XP_002510609.1| conserved hypothetical protein [Ricinus communis] gi|223551310|gb|EEF52796.1| conserved hypothetical protein [Ricinus communis]

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 141/320 (44%), Gaps = 47/320 (14%)

Query: 7   SWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPLLLRNLN 66
           SWS LP ELL  I QK  +  D ++     AVC SW S +    H +   LP LLL +  
Sbjct: 3   SWSELPQELLQTITQKQTNYVDYISTR---AVCKSWWSAIPKKPHDLLCRLPWLLLPHHK 59

Query: 67  ENCVNRQSCTFFNPKTKKFREIPLPEVKGRWVSCSSHGWLLTVSCLDETQNMFLLHPFTR 126
           +N  +R    F+NP   K   + LPE   +    SSHGWL+ V   ++T ++FLL+P T+
Sbjct: 60  DNPNHR---GFYNPSDGKTYHLELPETVDKRCCGSSHGWLVMV---EDTPSIFLLNPLTK 113

Query: 127 SQVKLPP----PPPGTQLQFLNG------------LRV--------ITSTSPLDPDCLVL 162
           S+++LP     P   T++ + N             LR+        I S  P     +V+
Sbjct: 114 SRIELPSLSTFPNFPTEVIYQNSRNLNEYFIRNNKLRIRETYIRKAIVSEDPSVGSFMVM 173

Query: 163 A---SLYVSSKLAFCRPGDRN-WTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNF 218
           A   ++  S  +AFC+ GD   +T+    Q I + +   H        +G FY +     
Sbjct: 174 AIYKTINGSENIAFCKSGDAALFTTQETSQEIHYQDVMFH--------RGKFYMVNDKGR 225

Query: 219 IFRIRFD-HPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTC 277
           +     D +P +    A P  P       +  YL  LN DL +V RF     S     T 
Sbjct: 226 VSICITDINPPSVIHVADP-PPVPLLMGYKQWYLATLNEDLILVGRFRNYRVSGYEYQTH 284

Query: 278 AFIVCKLDLETEKWIMVNNI 297
            FIV KLD  +  W  ++ +
Sbjct: 285 KFIVYKLDSSSSNWSKLDGL 304

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838880|emb|CAN63667.1| hypothetical protein VITISV_013184 [Vitis vinifera]

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 95/192 (49%), Gaps = 20/192 (10%)

Query: 7   SWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQI----RPNL--PPL 60
            W+ LPD+LL  I+  L     I++     AVC+ W S+    + ++    RP+L  PPL
Sbjct: 132 GWAWLPDDLLEPILNNLAS---IVDSIRFGAVCTPWHSLAVKSFQRLPVNQRPHLQPPPL 188

Query: 61  LLRNLNENCVNRQSCTFFNPKTKKFREIPLPEVKGRWVSCSSHGWLLTVSCLDETQNMFL 120
               +     ++ S +F++   +K  +  LP   G     SSHGWL+T    DET  + L
Sbjct: 189 PWLMVLSKPNSKDSRSFYSITHQKLSKFHLPVPPGTRYCGSSHGWLITT---DETNAVSL 245

Query: 121 LHPFTRSQVKLPP-----PPPGTQLQFLNGLR--VITSTSPLDPDCLVLASLYVSSK-LA 172
           LHPF+R  ++LPP      P  T   F   L   V+++    +PD  VL  +Y   K LA
Sbjct: 246 LHPFSRQVIRLPPLTRLKIPQRTVYGFEYHLHKGVLSANPTSNPDDFVLMVIYGHDKGLA 305

Query: 173 FCRPGDRNWTSI 184
           F + GD+NW  I
Sbjct: 306 FIKSGDQNWAYI 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22327850|ref|NP_200326.2| uncharacterized protein [Arabidopsis thaliana] gi|142991284|sp|Q9FLP7.2|FB294_ARATH RecName: Full=Putative F-box protein At5g55150 gi|332009209|gb|AED96592.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 132/315 (41%), Gaps = 59/315 (18%)

Query: 1   MAPQQLSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIRPNLPPL 60
           MA    SWS    ELL+ +   L D+ DILNCA    VCSSW+     +Y+  R   P L
Sbjct: 1   MALPSSSWSEFLPELLNTVFHNLNDARDILNCAT---VCSSWKDSSSAVYYS-RTFSPFL 56

Query: 61  LLRNLNENCVNRQSCTFFNPKTKKFREIPLPEVKGRWVSCSSHGWLLTVSCLDETQNMFL 120
            + +L+ N   R S  F   +     ++     +  WV  S+ G+LLT            
Sbjct: 57  FISHLSSNEEIRFSDQF---RVLSPGKLGFSGNQQAWVCGSTLGFLLT------------ 101

Query: 121 LHPFTRSQVKLPP-----------------PPPGTQLQFLNGLRVITSTSPLDPDCLVLA 163
             P T+S   LPP                 P       F+   + ++STS LD + +VL 
Sbjct: 102 -KPVTKSVTSLPPLISFEDVQRLLQSQAIIPDSEALKNFIK--KAVSSTSLLDDEWVVLV 158

Query: 164 SLYVSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIF--R 221
                 KLAFCR GD+ WT +          + A   D    C G F+ +     I+   
Sbjct: 159 IYNTDRKLAFCRRGDKQWTDL---------ESVASSVDDIVFCNGVFFAIDRLGEIYHCE 209

Query: 222 IRFDHPHA-PTAEAMPFKPHEYCCNARYNYLVELNSD-LFIVSRFLIPHKSYPCELTCAF 279
           +  ++P A P     PF+ ++ C      YL E + D L++V + L  +    C+   +F
Sbjct: 210 LSANNPKATPLCSTSPFR-YDSC----KKYLAESDYDELWVVLKKLELNDD--CDFETSF 262

Query: 280 IVCKLDLETEKWIMV 294
            + + + ET +W  V
Sbjct: 263 EIYEFNRETNEWTKV 277

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
TAIR|locus:2161665	360	AT5G55150 "AT5G55150" [Arabido	0.814	0.672	0.274	6.3e-11
TAIR|locus:2094004	380	AT3G18720 "AT3G18720" [Arabido	0.579	0.452	0.283	1e-08
TAIR|locus:2132021	363	AT4G22170 "AT4G22170" [Arabido	0.380	0.311	0.325	1.5e-06
TAIR|locus:2010172	481	AT1G49360 "AT1G49360" [Arabido	0.777	0.480	0.237	2.5e-06
TAIR|locus:2139207	317	AT4G10660 "AT4G10660" [Arabido	0.585	0.548	0.265	5.6e-06
TAIR|locus:2042669	415	AT2G16290 "AT2G16290" [Arabido	0.383	0.274	0.267	9.6e-05
TAIR|locus:2102519	367	AT3G56470 "AT3G56470" [Arabido	0.750	0.607	0.228	0.00018
TAIR|locus:504955409	234	AT4G10695 "AT4G10695" [Arabido	0.424	0.538	0.283	0.00019
TAIR|locus:2127595	396	AT4G22660 "AT4G22660" [Arabido	0.393	0.295	0.292	0.00026
TAIR|locus:504956069	367	AT2G44735 "AT2G44735" [Arabido	0.468	0.378	0.257	0.0003

TAIR|locus:2161665 AT5G55150 "AT5G55150" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 6.3e-11, P = 6.3e-11
 Identities = 75/273 (27%), Positives = 112/273 (41%)

Query:     1 MAPQQLSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIXXXXXXX 60
             MA    SWS    ELL+ +   L D+ DILNCA    VCSSW+     +Y+         
Sbjct:     1 MALPSSSWSEFLPELLNTVFHNLNDARDILNCAT---VCSSWKDSSSAVYYSRTFSPFLF 57

Query:    61 XXXXXXENCVNRQSCTFFNPKTKKFREIPLPEVKGRWVSCSSHGWLLTVSCLDETQNMFL 120
                      + R S  F   +     ++     +  WV  S+ G+LLT        ++  
Sbjct:    58 ISHLSSNEEI-RFSDQF---RVLSPGKLGFSGNQQAWVCGSTLGFLLTKPVTKSVTSLPP 113

Query:   121 LHPFTRSQVKLPPP---PPGTQLQ-FLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRP 176
             L  F   Q  L      P    L+ F+   + ++STS LD + +VL       KLAFCR 
Sbjct:   114 LISFEDVQRLLQSQAIIPDSEALKNFIK--KAVSSTSLLDDEWVVLVIYNTDRKLAFCRR 171

Query:   177 GDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRF--DHPHA-PTAE 233
             GD+ WT +          + A   D    C G F+ +     I+      ++P A P   
Sbjct:   172 GDKQWTDL---------ESVASSVDDIVFCNGVFFAIDRLGEIYHCELSANNPKATPLCS 222

Query:   234 AMPFKPHEYCCNARYNYLVELNSD-LFIVSRFL 265
               PF+ ++ C      YL E + D L++V + L
Sbjct:   223 TSPFR-YDSC----KKYLAESDYDELWVVLKKL 250

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2094004 AT3G18720 "AT3G18720" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 55/194 (28%), Positives = 79/194 (40%)

Query:    78 FNPKTKKFREIPLPEVKG--RWVSCSSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPP 135
             FNP   +   +  PE+ G    ++C+  GWLL V   D    +F L+PFT  ++ LP  P
Sbjct:   113 FNPSRSQTHHLKFPELTGYRNKLACAKDGWLLVVK--DNPDVVFFLNPFTGERICLPQVP 170

Query:   136 PGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPGDRNWTSIVHDQYIRFTNT 195
               +    L      TSTS         + LY   K+   RPG+  WT+   DQ  R+   
Sbjct:   171 QNSTRDCLTFSAAPTSTSCCVISFTPQSFLYAVVKVDTWRPGESVWTTHHFDQK-RYGEV 229

Query:   196 SAHFYDGRNCC---KGYFYCLGSCNFIFRIRFDHPHAPTAEAMPFKP----HEYCCNARY 248
                     N C    G FYCL +     R+    P   T   +P KP           R 
Sbjct:   230 I-------NRCIFSNGMFYCLSTSG---RLSVFDPSRETWNVLPVKPCRAFRRKIMLVRQ 279

Query:   249 NYLVELNSDLFIVS 262
              ++ E   D+F+V+
Sbjct:   280 VFMTEHEGDIFVVT 293

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132021 AT4G22170 "AT4G22170" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 44/135 (32%), Positives = 65/135 (48%)

Query:     7 SWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSW-----QSVVKDLYHQIXXXXXXXX 61
             SWS LP +LL+++ ++L       N     +VCSSW     QSV K+  H +        
Sbjct:     9 SWSDLPHDLLNLVFERL----SFANFNRARSVCSSWYSASRQSVPKNQIHWLILFPED-- 62

Query:    62 XXXXXENCVNRQSCTFFNP--KTKKFREIPLPEVKGRWVSCSSHG-WLLTVSCLDETQNM 118
                   N  N  SCT FNP  K K ++   L E   + V  +++G W L V   D   N+
Sbjct:    63 -----NNNKNNSSCTLFNPDEKDKLYKTQHLDEEFAKSVCRATYGSWFLMV---DPLFNL 114

Query:   119 FLLHPFTRSQVKLPP 133
             ++L+ FTR ++ L P
Sbjct:   115 YILNLFTRERINLHP 129

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010172 AT1G49360 "AT1G49360" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 61/257 (23%), Positives = 102/257 (39%)

Query:    11 LPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIXXXXXXXXXXXXXENCV 70
             LP +L+ +I+ +L   D+I +  VC A    W  +   +  ++             ++  
Sbjct:   111 LPSDLVRLILSRLSFKDNIRSSTVCKA----WGDIAASV--RVKSRRCWLLYHDAFQD-- 162

Query:    71 NRQSCTFFNP-KTKKFREIPLPEV-KGRWVSCSSHGWLLTVSCLDETQNMFLLHPFTRSQ 128
                S  FF+P + KK +E+ LPE+ K   +  S  GWLL    L    +M+  +PFTR +
Sbjct:   163 KGVSYGFFDPVEKKKTKEMNLPELSKSSGILYSKDGWLLMNDSLSLIADMYFFNPFTRER 222

Query:   129 VKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSS----KLAFCRPGDRNWTSI 184
             + LP      ++          S +P    CLV     +SS    K++  RPG   W   
Sbjct:   223 IDLPR----NRIMESVHTNFAFSCAPTKKSCLVFGINNISSSVAIKISTWRPGATTW--- 275

Query:   185 VHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHAPTAEAMPFKPHEYCC 244
             +H+ +     +            G FY            FD P A T   +P +P     
Sbjct:   276 LHEDFPNLFPSYFRRLGNILYSDGLFYTASETALGV---FD-PTARTWNVLPVQPIPMAP 331

Query:   245 NARYNYLVELNSDLFIV 261
              +   ++ E    +F+V
Sbjct:   332 RS-IRWMTEYEGHIFLV 347

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2139207 AT4G10660 "AT4G10660" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 5.6e-06, P = 5.6e-06
 Identities = 55/207 (26%), Positives = 87/207 (42%)

Query:    71 NRQSCTF-FNPKTKKFREIPLPEVKGRWVSCSSHGWLLTVSCLDETQNMFLLHPFTRSQV 129
             N +  TF F+P  +K   + LPE+ G  V  S  GWLL         +MF  +P+TR  +
Sbjct:    26 NHEDLTFLFDPLERKRYTLNLPELVGTDVCYSKDGWLLMRR--SSLVDMFFFNPYTRELI 83

Query:   130 KLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLA----SLYVSSKLAFCRPGDRNWTSIV 185
              LP      +L F     +  S++P    C+VLA    + Y+  +++ C PG   W +  
Sbjct:    84 NLPK----CELAFQ---AIAFSSAPTSGTCVVLALRPFTRYII-RISICYPGATEWITQE 135

Query:   186 HDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHAPTAEAMPFKPHEYCC- 244
                 +RF     + +        +FYC  S   +  + FD      +E   +  H  C  
Sbjct:   136 FSCSLRF---DPYMHSNLVYANDHFYCFSSGGVL--VDFDVASRTMSE-QAWNEHR-CAY 188

Query:   245 ----NAR-YN-----YLVELNSDLFIV 261
                 NA  +N     YL E   +LF++
Sbjct:   189 MRNDNAEWFNLPKRIYLAEQKGELFLM 215

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2042669 AT2G16290 "AT2G16290" [Arabidopsis thaliana (taxid:3702)]

 Score = 83 (34.3 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
 Identities = 34/127 (26%), Positives = 49/127 (38%)

Query:   171 LAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHAP 230
             L   R  + +WT +V        +   + Y      KG FY L S     R+        
Sbjct:   206 LVMYRSRNMSWTQVVE-------HPETYAYQDLVAFKGKFYALDSSGR-GRVFVVELSLR 257

Query:   231 TAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLE--T 288
               E    K  +YC       LV+L  +L +V RF+   + Y   +   F V +LD E   
Sbjct:   258 VTEIPSVKGSQYCSKES---LVQLGEELLLVQRFIPAGRRYDEYIYTWFKVFRLDEEGGK 314

Query:   289 EKWIMVN 295
              KW+ VN
Sbjct:   315 RKWVQVN 321

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2102519 AT3G56470 "AT3G56470" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
 Identities = 59/258 (22%), Positives = 106/258 (41%)

Query:    10 SLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIXXXXXXXXXXXXXENC 69
             +LP +LL ++I +L   D+I      +AVC +W      L  ++             ++ 
Sbjct:    31 NLPCDLLQLVISRLPLKDNIR----ASAVCKTWHEACVSL--RVIHTSPWLIYFSKTDD- 83

Query:    70 VNRQSCTFFNPKTKKFREIPLPEVKGRWVSCSSHGWLLTVSCLDETQNMFLLHPFTRSQV 129
                 S   ++P  +K   +  PE+ G  V  S  GWLL  +    +  +   +PFTR  V
Sbjct:    84 ----SYELYDPSMQKNCNLHFPELSGFRVCYSKDGWLLMYN--PNSYQLLFFNPFTRDCV 137

Query:   130 KLPPPPPGTQLQFLNGLRVITSTSPLDPDCLV--LASL---YVSSKLAFCRPGDRNW-TS 183
              +P       L      R+  S +P    CL+  + S+   Y++ K  F     + W TS
Sbjct:   138 PMPT------LWMAYDQRMAFSCAPTSTSCLLFTVTSVTWNYITIKTYFANA--KEWKTS 189

Query:   184 IVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHAPTAEAMPFKPHEYC 243
             +  ++  R  NT    ++      G FYCL +   +    FD P       +P +P +  
Sbjct:   190 VFKNRLQRNFNT----FEQIVFSNGVFYCLTNTGCL--ALFD-PSLNYWNVLPGRPPKRP 242

Query:   244 CNARYNYLVELNSDLFIV 261
               +   ++ E   ++F++
Sbjct:   243 -GSNGCFMTEHQGEIFLI 259

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504955409 AT4G10695 "AT4G10695" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 0.00019, P = 0.00019
 Identities = 40/141 (28%), Positives = 59/141 (41%)

Query:    78 FNPKTKKFREIPLPEVKGRWVSCSSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPG 137
             F+P  +K   + LPE+ G  V  S  GWLL         +MF L+P+TR  + LP     
Sbjct:    48 FDPLGRKSYTLNLPELVGTDVCYSKDGWLLMRR--SSLVDMFFLNPYTRELINLPK---- 101

Query:   138 TQLQFLNGLRVITSTSPLDPDCLVLASLYVSS---KLAFCRPGDRNWTSIVHDQYIRFTN 194
              +L F     V  S+ P    C V+A    +    +++ C PG   W  I  D +     
Sbjct:   102 CELSFQ---AVAFSSVPTSGTCAVIALRPFTRFIIRISICFPGATEW--ITQD-FSCSHG 155

Query:   195 TSAHFYDGRNCCKGYFYCLGS 215
                + +       G+FYC  S
Sbjct:   156 FEPYMHSNLVYANGHFYCFSS 176

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2127595 AT4G22660 "AT4G22660" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 0.00026, P = 0.00026
 Identities = 38/130 (29%), Positives = 60/130 (46%)

Query:     7 SWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQIXXXXXXXXXXXXX 66
             +WS LP +LL+++ ++L       N     +VCSSW S  K    +              
Sbjct:     9 TWSDLPLDLLNLVFKRL----SFANFRQAKSVCSSWYSASKQSVPKNQIPWLMLFPKDKN 64

Query:    67 ENCVNRQSCT-FFNPKTKK--FREIPLPEVKGRWVSCSSHG-WLLTVSCLDETQNMFLLH 122
              N     SCT FFNP+ K   ++   L     + V  +++G WLL     D   N+++L+
Sbjct:    65 NN--KNSSCTIFFNPEDKDQLYQTQDLGVEFAKSVCLATYGSWLLMQ---DSKYNLYILN 119

Query:   123 PFTRSQVKLP 132
             PFT  ++ LP
Sbjct:   120 PFTYEKIGLP 129

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504956069 AT2G44735 "AT2G44735" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 0.00030, P = 0.00030
 Identities = 42/163 (25%), Positives = 73/163 (44%)

Query:   120 LLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSS----KLAFCR 175
             +L+PFTR    LPP     + +FL       S +P  P C+V++   + S     +   R
Sbjct:   109 VLNPFTRESFYLPPRRHEHRSRFL-----AFSAAPTSPSCMVISYTQLRSCGSVLIDTWR 163

Query:   176 PGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHAPTAEAM 235
             PG+  WT+   +  + F   S   +       G F+CL  C ++    FD P   T   +
Sbjct:   164 PGETEWTTHCFENQLPFRYWSKCVFSN-----GMFFCLSECGYLGV--FD-PSKATWNIL 215

Query:   236 PFKP----HEYCCNARYN--YLVELNSDLFIVSRFLIPH-KSY 271
             P KP    +++  +  +N  ++ E   D+F +  F + + +SY
Sbjct:   216 PVKPCPAFYQFEFDYTHNPVFMTEHEGDIFDIIMFRLCNCRSY 258

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.8__1416__AT5G55150.1 annotation not avaliable (375 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	297
pfam12937	47	pfam12937, F-box-like, F-box-like	0.001

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 35.9 bits (84), Expect = 0.001
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 8  WSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKD--LYHQI 53
           S LPDE+L  I   L D  D+L  A    VC  W+ +  D  L+ ++
Sbjct: 1  LSDLPDEILLQIFSYL-DPRDLLRLA---LVCRRWRELASDDSLWRRL 44

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	297
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	100.0
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.75
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.81
PHA02713	557	hypothetical protein; Provisional	98.64
PHA02790	480	Kelch-like protein; Provisional	98.62
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.53
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.42
PHA02713	557	hypothetical protein; Provisional	98.39
PHA03098	534	kelch-like protein; Provisional	98.3
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.25
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	98.2
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.15
PLN02153	341	epithiospecifier protein	98.06
PLN02193	470	nitrile-specifier protein	97.9
PHA03098	534	kelch-like protein; Provisional	97.89
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	97.76
PHA02790	480	Kelch-like protein; Provisional	97.57
PLN02153	341	epithiospecifier protein	97.55
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	97.51
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	97.42
PLN02193	470	nitrile-specifier protein	97.36
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	97.35
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	96.97
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.96
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	96.94
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	96.87
KOG1230	521	consensus Protein containing repeated kelch motifs	94.51
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	94.05
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	93.87
PF13964	50	Kelch_6: Kelch motif	92.78
KOG2997	366	consensus F-box protein FBX9 [General function pre	92.45
KOG4693	392	consensus Uncharacterized conserved protein, conta	91.88
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	91.43
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	90.75
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	90.66
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	90.12
KOG4341	483	consensus F-box protein containing LRR [General fu	89.31
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	88.74
KOG2502	355	consensus Tub family proteins [General function pr	87.81
KOG4693	392	consensus Uncharacterized conserved protein, conta	87.69
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	86.94
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	85.37
KOG2055	514	consensus WD40 repeat protein [General function pr	85.01
KOG1230	521	consensus Protein containing repeated kelch motifs	83.76

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=100.00  E-value=3.5e-33  Score=243.33  Aligned_cols=265  Identities=21%  Similarity=0.368  Sum_probs=174.3

Q ss_pred             CCCCCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhhhcc-CCCCCCCeEeccc-ccccCCCcc------eE
Q 035663            5 QLSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQ-IRPNLPPLLLRNL-NENCVNRQS------CT   76 (297)
Q Consensus         5 ~~~ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~~~-~~~~~P~L~~~~~-~~~~~~~~~------~~   76 (297)
                      +.+|++||+|||..|..||+...|++|   ||+||++||+++...... ..++.||+++..- +........      .+
T Consensus         1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~---~~~vC~sWr~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (373)
T PLN03215          1 MADWSTLPEELLHMIAGRLFSNVELKR---FRSICRSWRSSVSGVGKKNPFRTRPLILFNPINPSETLTDDRSYISRPGA   77 (373)
T ss_pred             CCChhhCCHHHHHHHHhhCCcHHHHHH---HHhhhhhHHHhcccccccCCcccccccccCcccCCCCccccccccccccc
Confidence            468999999999999999999999999   999999999998864311 2334477775531 011111000      11


Q ss_pred             EEecCCCcEEecCCCCCCCCceEEeeCCeEEEEeecC-CCccEEEEcCCCCCeecCCCCCCC-CCce---------eec-
Q 035663           77 FFNPKTKKFREIPLPEVKGRWVSCSSHGWLLTVSCLD-ETQNMFLLHPFTRSQVKLPPPPPG-TQLQ---------FLN-  144 (297)
Q Consensus        77 ~~~~~~~~~~~~~~p~~~~~~~~~s~~Gwll~~~~~~-~~~~~~l~NP~T~~~i~LP~~~~~-~~~~---------~~~-  144 (297)
                      ++..  ...++++.+..       +++|||+.+. .+ ..+++.|.||+++..+.+|+.... ..+.         +.. 
T Consensus        78 ~ls~--~~~~r~~~~~~-------~~~~WLik~~-~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~  147 (373)
T PLN03215         78 FLSR--AAFFRVTLSSS-------PSKGWLIKSD-MDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDW  147 (373)
T ss_pred             eeee--eEEEEeecCCC-------CCCCcEEEEe-ccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEec
Confidence            1111  13555554431       3699999932 12 238999999999999998863211 1111         100 


Q ss_pred             ----------CceEEEecCCCCC-CEEEEEEeCCCCeEEEEecCCCceEeeccC--cccccCCcCeEEeCCccccCCeEE
Q 035663          145 ----------GLRVITSTSPLDP-DCLVLASLYVSSKLAFCRPGDRNWTSIVHD--QYIRFTNTSAHFYDGRNCCKGYFY  211 (297)
Q Consensus       145 ----------~~~~~ls~~p~~~-~~~Vv~~~~~~~~l~~~~~g~~~W~~~~~~--~~~~~~~~d~v~~~~~~~~~G~~Y  211 (297)
                                ..++++...+.++ +|.|++++. .+.+++|+  +++|+.++.+  .+.     |+++|+      |+||
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~-~g~l~~w~--~~~Wt~l~~~~~~~~-----DIi~~k------GkfY  213 (373)
T PLN03215        148 AKRRETRPGYQRSALVKVKEGDNHRDGVLGIGR-DGKINYWD--GNVLKALKQMGYHFS-----DIIVHK------GQTY  213 (373)
T ss_pred             ccccccccceeEEEEEEeecCCCcceEEEEEee-cCcEeeec--CCeeeEccCCCceee-----EEEEEC------CEEE
Confidence                      0122222233333 588888874 67899988  6999999876  677     999999      9999


Q ss_pred             EeccCCcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCC------CCCCceeeEEEEEEE
Q 035663          212 CLGSCNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKS------YPCELTCAFIVCKLD  285 (297)
Q Consensus       212 ~l~~~g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~------~~~~~~~~~~V~~ld  285 (297)
                      +++..|.++++|.+...........+.+.. +......||||++|+|++|.++......      +....+.+|+|||+|
T Consensus       214 AvD~~G~l~~i~~~l~i~~v~~~i~~~~~~-g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD  292 (373)
T PLN03215        214 ALDSIGIVYWINSDLEFSRFGTSLDENITD-GCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFD  292 (373)
T ss_pred             EEcCCCeEEEEecCCceeeecceecccccC-CcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEc
Confidence            999999999998543211111111111111 1123568999999999999998643111      111256889999999


Q ss_pred             CCCCceeecccC
Q 035663          286 LETEKWIMVNNI  297 (297)
Q Consensus       286 ~~~~~W~~v~~L  297 (297)
                      .+.++|++|++|
T Consensus       293 ~~~~~WveV~sL  304 (373)
T PLN03215        293 DELAKWMEVKTL  304 (373)
T ss_pred             CCCCcEEEeccc
Confidence            999999999987

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.75  E-value=1e-16  Score=134.87  Aligned_cols=170  Identities=15%  Similarity=0.197  Sum_probs=119.3

Q ss_pred             eeCCeEEEEeecCCCccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCC-----CCeEEEEe
Q 035663          101 SSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYV-----SSKLAFCR  175 (297)
Q Consensus       101 s~~Gwll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~-----~~~l~~~~  175 (297)
                      ||+|+|++   .+. ..++|+||.|+++..||+++.......  ...+.|+.|+.+++|+|+.+...     .....+|+
T Consensus         3 sCnGLlc~---~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~--~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys   76 (230)
T TIGR01640         3 PCDGLICF---SYG-KRLVVWNPSTGQSRWLPTPKSRRSNKE--SDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYT   76 (230)
T ss_pred             ccceEEEE---ecC-CcEEEECCCCCCEEecCCCCCcccccc--cceEEEeecccCCcEEEEEEEeecCCCCCccEEEEE
Confidence            68999988   433 789999999999999997653211010  01357888998899999988642     24678999


Q ss_pred             cCCCceEeeccC-cccccCCcCeEEeCCccccCCeEEEeccCC------cEEEEecCCCCCCceecCCCCCCccccCCce
Q 035663          176 PGDRNWTSIVHD-QYIRFTNTSAHFYDGRNCCKGYFYCLGSCN------FIFRIRFDHPHAPTAEAMPFKPHEYCCNARY  248 (297)
Q Consensus       176 ~g~~~W~~~~~~-~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g------~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~  248 (297)
                      +++++|+.+... ... ...+..++.|      |.+||+...+      .|++||+..+.+...+++|.....   ....
T Consensus        77 ~~~~~Wr~~~~~~~~~-~~~~~~v~~~------G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~---~~~~  146 (230)
T TIGR01640        77 LGSNSWRTIECSPPHH-PLKSRGVCIN------GVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSD---SVDY  146 (230)
T ss_pred             eCCCCccccccCCCCc-cccCCeEEEC------CEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccc---cccc
Confidence            999999998753 111 1111366777      9999998632      599999999987732455542211   1235


Q ss_pred             eEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEE-CCCCceeecc
Q 035663          249 NYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLD-LETEKWIMVN  295 (297)
Q Consensus       249 ~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld-~~~~~W~~v~  295 (297)
                      ..|++.+|+|.++.....         ...++||.|+ .+.++|++.-
T Consensus       147 ~~L~~~~G~L~~v~~~~~---------~~~~~IWvl~d~~~~~W~k~~  185 (230)
T TIGR01640       147 LSLINYKGKLAVLKQKKD---------TNNFDLWVLNDAGKQEWSKLF  185 (230)
T ss_pred             eEEEEECCEEEEEEecCC---------CCcEEEEEECCCCCCceeEEE
Confidence            689999999999887653         2349999995 4567898753

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.81  E-value=3e-09  Score=65.87  Aligned_cols=38  Identities=42%  Similarity=0.729  Sum_probs=33.9

Q ss_pred             CCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhh
Q 035663            8 WSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDL   49 (297)
Q Consensus         8 ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~   49 (297)
                      |.+||+|++..|++.| +..|+.+   ++.|||.|+.++.++
T Consensus         1 i~~LP~Eil~~If~~L-~~~dl~~---~~~vcr~w~~~~~~~   38 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYL-DPRDLLR---LSLVCRRWRRIANDN   38 (47)
T ss_dssp             CCCS-HHHHHHHHTTS--HHHHHH---HTTSSHHHHHHHTCC
T ss_pred             ChHhHHHHHHHHHhcC-CHHHHHH---HHHHHHHHHHHHCCh
Confidence            7899999999999999 9999999   999999999999654

>PHA02713 hypothetical protein; Provisional

Probab=98.64  E-value=7.4e-06  Score=77.71  Aligned_cols=191  Identities=13%  Similarity=0.152  Sum_probs=118.3

Q ss_pred             ceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecCC----CccEEEEcCCCCCeecCCCCCCCCCceeecCce
Q 035663           74 SCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLDE----TQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLR  147 (297)
Q Consensus        74 ~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~~----~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~  147 (297)
                      ....||+.+++|..+. +|.. ...... ..+|-+..+-+.+.    ...++.+||.+..|..+|+++.....      .
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~-r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~------~  345 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNH-IINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR------F  345 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCcc-ccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc------e
Confidence            3457999999998763 4432 222222 55776666433221    14688999999999999998744211      0


Q ss_pred             EEEecCCCCCCEEEEEEeCC-----CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC------
Q 035663          148 VITSTSPLDPDCLVLASLYV-----SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC------  216 (297)
Q Consensus       148 ~~ls~~p~~~~~~Vv~~~~~-----~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~------  216 (297)
                      .+.+.    ++. +.++++.     ...+..|.+..++|+.+..++..+... .++.++      |++|+++..      
T Consensus       346 ~~~~~----~g~-IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~-~~~~~~------g~IYviGG~~~~~~~  413 (557)
T PHA02713        346 SLAVI----DDT-IYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSY-GMCVLD------QYIYIIGGRTEHIDY  413 (557)
T ss_pred             eEEEE----CCE-EEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccc-cEEEEC------CEEEEEeCCCccccc
Confidence            11111    121 2222221     235788999999999988762111111 455667      999998631      


Q ss_pred             ------------------CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceee
Q 035663          217 ------------------NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCA  278 (297)
Q Consensus       217 ------------------g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~  278 (297)
                                        ..+.+||+..+.|....+++.+       ......+..+|+|++++.....       ....
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-------r~~~~~~~~~~~IYv~GG~~~~-------~~~~  479 (557)
T PHA02713        414 TSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG-------TIRPGVVSHKDDIYVVCDIKDE-------KNVK  479 (557)
T ss_pred             ccccccccccccccccccceEEEECCCCCeEeecCCCCcc-------cccCcEEEECCEEEEEeCCCCC-------Cccc
Confidence                              2478899999999753344431       2334578889999999765421       1122


Q ss_pred             EEEEEEECCC-CceeecccC
Q 035663          279 FIVCKLDLET-EKWIMVNNI  297 (297)
Q Consensus       279 ~~V~~ld~~~-~~W~~v~~L  297 (297)
                      -.|.+.|.++ ++|..+.+|
T Consensus       480 ~~ve~Ydp~~~~~W~~~~~m  499 (557)
T PHA02713        480 TCIFRYNTNTYNGWELITTT  499 (557)
T ss_pred             eeEEEecCCCCCCeeEcccc
Confidence            3478889998 799988764

>PHA02790 Kelch-like protein; Provisional

Probab=98.62  E-value=6.3e-06  Score=76.89  Aligned_cols=187  Identities=11%  Similarity=0.099  Sum_probs=117.1

Q ss_pred             ceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecCCCccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEe
Q 035663           74 SCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITS  151 (297)
Q Consensus        74 ~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls  151 (297)
                      ....||+.+++|..++ +|. +...... +.+|.+..+-+.+....+.-+||.+.+|..+|+++.....      .++.+
T Consensus       288 ~v~~Ydp~~~~W~~~~~m~~-~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~------~~~~~  360 (480)
T PHA02790        288 NAIAVNYISNNWIPIPPMNS-PRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN------PAVAS  360 (480)
T ss_pred             eEEEEECCCCEEEECCCCCc-hhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc------cEEEE
Confidence            4556999999998774 332 2222222 6788887744333335677889999999999998754211      11111


Q ss_pred             cCCCCCCEEEEEEeCC---CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccCCcEEEEecCCCC
Q 035663          152 TSPLDPDCLVLASLYV---SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPH  228 (297)
Q Consensus       152 ~~p~~~~~~Vv~~~~~---~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~~~~  228 (297)
                      .    ++. +.++++.   ...+..|.+..++|+.++.+...+... .++.++      |++|+++  |..-.||+..+.
T Consensus       361 ~----~g~-IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~~~~------~~IYv~G--G~~e~ydp~~~~  426 (480)
T PHA02790        361 I----NNV-IYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CALVFG------RRLFLVG--RNAEFYCESSNT  426 (480)
T ss_pred             E----CCE-EEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEEEEC------CEEEEEC--CceEEecCCCCc
Confidence            1    111 2222221   235678999999999987762111111 455667      9999997  457789999999


Q ss_pred             CCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeeccc
Q 035663          229 APTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN  296 (297)
Q Consensus       229 ~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~  296 (297)
                      |....+++.+       ......+-.+|+|++++.....       . ..-.|...|.++++|.-++.
T Consensus       427 W~~~~~m~~~-------r~~~~~~v~~~~IYviGG~~~~-------~-~~~~ve~Yd~~~~~W~~~~~  479 (480)
T PHA02790        427 WTLIDDPIYP-------RDNPELIIVDNKLLLIGGFYRG-------S-YIDTIEVYNNRTYSWNIWDG  479 (480)
T ss_pred             EeEcCCCCCC-------ccccEEEEECCEEEEECCcCCC-------c-ccceEEEEECCCCeEEecCC
Confidence            9852234431       2345678889999999986532       1 11246677899999987763

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.53  E-value=2.4e-08  Score=62.08  Aligned_cols=40  Identities=38%  Similarity=0.630  Sum_probs=34.2

Q ss_pred             CCCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhhh
Q 035663            7 SWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLY   50 (297)
Q Consensus         7 ~ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~   50 (297)
                      .|++||+|++.+|+.+| +..|+++   ++.|||.|++++.+..
T Consensus         2 ~~~~LP~~il~~Il~~l-~~~~~~~---l~~vsk~~~~~~~~~~   41 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYL-DPKDLLR---LSLVSKRWRSLVDSPR   41 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS--HHHHHH---HCTT-HHHHHHHTTHH
T ss_pred             CHHHCCHHHHHHHHHHC-cHHHHHH---HHHHhhHHHHHHcCCC
Confidence            46789999999999999 9999999   9999999999998765

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.42  E-value=1.2e-07  Score=56.70  Aligned_cols=36  Identities=36%  Similarity=0.657  Sum_probs=33.6

Q ss_pred             CcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhhh
Q 035663           11 LPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLY   50 (297)
Q Consensus        11 LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~   50 (297)
                      ||+|++..|+.+| +..|+.+   ++.|||.|+.++..+.
T Consensus         1 lP~~ll~~I~~~l-~~~d~~~---~~~vc~~~~~~~~~~~   36 (41)
T smart00256        1 LPDEILEEILSKL-PPKDLLR---LRKVSRRWRSLIDSHD   36 (41)
T ss_pred             CCHHHHHHHHHcC-CHHHHHH---HHHHHHHHHHHhcChh
Confidence            7999999999999 8899999   9999999999997654

>PHA02713 hypothetical protein; Provisional

Probab=98.39  E-value=4.1e-05  Score=72.72  Aligned_cols=196  Identities=11%  Similarity=0.042  Sum_probs=115.4

Q ss_pred             ceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecCCC---ccEEEEcCCCCCeecCCCCCCCCC-ce--eecC
Q 035663           74 SCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLDET---QNMFLLHPFTRSQVKLPPPPPGTQ-LQ--FLNG  145 (297)
Q Consensus        74 ~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~~~---~~~~l~NP~T~~~i~LP~~~~~~~-~~--~~~~  145 (297)
                      ....||+.++.|..++ +|. +...... +.+|-+..+-+.+..   ..+..+||-|.+|..+|+++.... ..  .++.
T Consensus       321 ~v~~Yd~~~n~W~~~~~m~~-~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g  399 (557)
T PHA02713        321 KVYKINIENKIHVELPPMIK-NRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQ  399 (557)
T ss_pred             eEEEEECCCCeEeeCCCCcc-hhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECC
Confidence            3556899988887653 332 2222223 568877664333221   468899999999999998775421 11  1110


Q ss_pred             ceEEEecCCCCCCEE-EEEE--------eCCCCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC
Q 035663          146 LRVITSTSPLDPDCL-VLAS--------LYVSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC  216 (297)
Q Consensus       146 ~~~~ls~~p~~~~~~-Vv~~--------~~~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~  216 (297)
                      .-.+++.......+. +...        ......+..|++..++|+.+..+...+.. ..++.++      |++|+++..
T Consensus       400 ~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~~~------~~IYv~GG~  472 (557)
T PHA02713        400 YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVSHK------DDIYVVCDI  472 (557)
T ss_pred             EEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc-CcEEEEC------CEEEEEeCC
Confidence            111111100000000 0000        00024577899999999998876222111 1567777      999999642


Q ss_pred             -------CcEEEEecCC-CCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCC
Q 035663          217 -------NFIFRIRFDH-PHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLET  288 (297)
Q Consensus       217 -------g~i~~~d~~~-~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~  288 (297)
                             ..+.+||+.. +.|....++|.+       ......+..+|+|++++.+...         .  .|-..|..+
T Consensus       473 ~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~-------r~~~~~~~~~~~iyv~Gg~~~~---------~--~~e~yd~~~  534 (557)
T PHA02713        473 KDEKNVKTCIFRYNTNTYNGWELITTTESR-------LSALHTILHDNTIMMLHCYESY---------M--LQDTFNVYT  534 (557)
T ss_pred             CCCCccceeEEEecCCCCCCeeEccccCcc-------cccceeEEECCEEEEEeeecce---------e--ehhhcCccc
Confidence                   1367899998 789853345542       2456778889999999887642         1  355678888


Q ss_pred             Cceeecc
Q 035663          289 EKWIMVN  295 (297)
Q Consensus       289 ~~W~~v~  295 (297)
                      .+|..+.
T Consensus       535 ~~W~~~~  541 (557)
T PHA02713        535 YEWNHIC  541 (557)
T ss_pred             ccccchh
Confidence            9998765

>PHA03098 kelch-like protein; Provisional

Probab=98.30  E-value=0.00016  Score=68.51  Aligned_cols=189  Identities=12%  Similarity=0.121  Sum_probs=113.0

Q ss_pred             ceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecCC---CccEEEEcCCCCCeecCCCCCCCCCceeecCceE
Q 035663           74 SCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLDE---TQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRV  148 (297)
Q Consensus        74 ~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~~---~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~  148 (297)
                      ....||+.+++|..++ +|. +.....+ +.+|-+...-+.+.   ...+..+||-|++|..+|+++.....      .+
T Consensus       312 ~v~~yd~~~~~W~~~~~~~~-~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~------~~  384 (534)
T PHA03098        312 SVVSYDTKTKSWNKVPELIY-PRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN------PC  384 (534)
T ss_pred             cEEEEeCCCCeeeECCCCCc-ccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc------ce
Confidence            4567999999997664 232 2222222 55776665333321   25688899999999998887643211      11


Q ss_pred             EEecCCCCCCEEEEEEeC--C----CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC------
Q 035663          149 ITSTSPLDPDCLVLASLY--V----SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC------  216 (297)
Q Consensus       149 ~ls~~p~~~~~~Vv~~~~--~----~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~------  216 (297)
                      +...    ++.+.+ +++  .    ...+..|++..++|+.+...+..+... .++..+      |++|+++..      
T Consensus       385 ~~~~----~~~iYv-~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~GG~~~~~~~  452 (534)
T PHA03098        385 VVNV----NNLIYV-IGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIYHD------GKIYVIGGISYIDNI  452 (534)
T ss_pred             EEEE----CCEEEE-ECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEEEC------CEEEEECCccCCCCC
Confidence            1111    222222 222  1    145788999999999987652221111 456667      999998642      


Q ss_pred             ---CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceee
Q 035663          217 ---NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIM  293 (297)
Q Consensus       217 ---g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~  293 (297)
                         ..+.+||+..+.|.....+|.+       .....++..+|+|++++.....        ...-.|+.+|.++++|..
T Consensus       453 ~~~~~v~~yd~~~~~W~~~~~~~~~-------r~~~~~~~~~~~iyv~GG~~~~--------~~~~~v~~yd~~~~~W~~  517 (534)
T PHA03098        453 KVYNIVESYNPVTNKWTELSSLNFP-------RINASLCIFNNKIYVVGGDKYE--------YYINEIEVYDDKTNTWTL  517 (534)
T ss_pred             cccceEEEecCCCCceeeCCCCCcc-------cccceEEEECCEEEEEcCCcCC--------cccceeEEEeCCCCEEEe
Confidence               1388999999999852223321       1123445568999988765532        112257788999999998


Q ss_pred             ccc
Q 035663          294 VNN  296 (297)
Q Consensus       294 v~~  296 (297)
                      +.+
T Consensus       518 ~~~  520 (534)
T PHA03098        518 FCK  520 (534)
T ss_pred             cCC
Confidence            765

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.25  E-value=9.6e-05  Score=70.18  Aligned_cols=193  Identities=16%  Similarity=0.168  Sum_probs=121.7

Q ss_pred             cceEEEecCCCcEEecCCCCCCCCceEE-eeCCeEEEEeecCCC---ccEEEEcCCCCCeecCCCCCCCCCceeecCceE
Q 035663           73 QSCTFFNPKTKKFREIPLPEVKGRWVSC-SSHGWLLTVSCLDET---QNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRV  148 (297)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~-s~~Gwll~~~~~~~~---~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~  148 (297)
                      +....||+..++|..+.--.......-+ +.+|.+..+-+.+..   ..+..++|-|.+|-..++...... .     ..
T Consensus       349 ~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~-~-----~g  422 (571)
T KOG4441|consen  349 SSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRS-G-----HG  422 (571)
T ss_pred             ceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCccee-e-----eE
Confidence            3456799999998874311111222223 678888775444422   578899999999998888765321 1     01


Q ss_pred             EEecCCCCCC-EEEEEEeCC---CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC-C-----c
Q 035663          149 ITSTSPLDPD-CLVLASLYV---SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC-N-----F  218 (297)
Q Consensus       149 ~ls~~p~~~~-~~Vv~~~~~---~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~-g-----~  218 (297)
                      +...   .+. |++=+..+.   -..+..|.|..++|+.++.+.-.+... .++..+      |++|+++.. |     .
T Consensus       423 v~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~~------~~iYvvGG~~~~~~~~~  492 (571)
T KOG4441|consen  423 VAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVLN------GKIYVVGGFDGTSALSS  492 (571)
T ss_pred             EEEE---CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEEEC------CEEEEECCccCCCccce
Confidence            1111   122 221111111   246788999999999999871111111 567778      999999763 2     3


Q ss_pred             EEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeeccc
Q 035663          219 IFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN  296 (297)
Q Consensus       219 i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~  296 (297)
                      +-.+|+..+.|....+++.       ......++-.+|+|++|+.+...      .....+.+|  |.++.+|.++..
T Consensus       493 VE~ydp~~~~W~~v~~m~~-------~rs~~g~~~~~~~ly~vGG~~~~------~~l~~ve~y--dp~~d~W~~~~~  555 (571)
T KOG4441|consen  493 VERYDPETNQWTMVAPMTS-------PRSAVGVVVLGGKLYAVGGFDGN------NNLNTVECY--DPETDTWTEVTE  555 (571)
T ss_pred             EEEEcCCCCceeEcccCcc-------ccccccEEEECCEEEEEecccCc------cccceeEEc--CCCCCceeeCCC
Confidence            7779999999975223333       23567888999999999996543      134556666  899999998764

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=98.20  E-value=8.2e-06  Score=62.09  Aligned_cols=79  Identities=20%  Similarity=0.227  Sum_probs=59.4

Q ss_pred             cCCeEEEeccC-----CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEE
Q 035663          206 CKGYFYCLGSC-----NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFI  280 (297)
Q Consensus       206 ~~G~~Y~l~~~-----g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~  280 (297)
                      ++|.+|++...     ..|++||+..+.+.. +..|...   ........|++.+|+|.++......       ....++
T Consensus         4 inGvly~~a~~~~~~~~~IvsFDv~~E~f~~-i~~P~~~---~~~~~~~~L~~~~G~L~~v~~~~~~-------~~~~~~   72 (129)
T PF08268_consen    4 INGVLYWLAWSEDSDNNVIVSFDVRSEKFRF-IKLPEDP---YSSDCSSTLIEYKGKLALVSYNDQG-------EPDSID   72 (129)
T ss_pred             ECcEEEeEEEECCCCCcEEEEEEcCCceEEE-EEeeeee---ccccCccEEEEeCCeEEEEEecCCC-------CcceEE
Confidence            34999999764     479999999998864 5555211   1134678999999999999887753       247899


Q ss_pred             EEEE-ECCCCceeecc
Q 035663          281 VCKL-DLETEKWIMVN  295 (297)
Q Consensus       281 V~~l-d~~~~~W~~v~  295 (297)
                      ||-| |.++++|++..
T Consensus        73 iWvLeD~~k~~Wsk~~   88 (129)
T PF08268_consen   73 IWVLEDYEKQEWSKKH   88 (129)
T ss_pred             EEEeeccccceEEEEE
Confidence            9999 56678999763

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.15  E-value=0.00017  Score=68.54  Aligned_cols=190  Identities=19%  Similarity=0.210  Sum_probs=122.7

Q ss_pred             cceEEEecCCCcEEec-CCCCCCCCceEE-eeCCeEEEEeecCC-C---ccEEEEcCCCCCeecCCCCCCCCCceeecCc
Q 035663           73 QSCTFFNPKTKKFREI-PLPEVKGRWVSC-SSHGWLLTVSCLDE-T---QNMFLLHPFTRSQVKLPPPPPGTQLQFLNGL  146 (297)
Q Consensus        73 ~~~~~~~~~~~~~~~~-~~p~~~~~~~~~-s~~Gwll~~~~~~~-~---~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~  146 (297)
                      +....||+.++.|..+ ++|.. .....+ .-+|.|..+-+.+. .   ..+..+||-+.+|..+|++...+..-    .
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~-r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~----~  375 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSP-RCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF----G  375 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcc-cccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc----e
Confidence            4566899999988876 34432 222222 56777766544451 2   67899999999999999987653210    0


Q ss_pred             eEEEecCCCCCCEEEEEEeCC-----CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEecc-C----
Q 035663          147 RVITSTSPLDPDCLVLASLYV-----SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGS-C----  216 (297)
Q Consensus       147 ~~~ls~~p~~~~~~Vv~~~~~-----~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~-~----  216 (297)
                      .+++      ++++ .++.+.     -..+..|.+..++|..+..+...+. .-.++.++      |++|++.. +    
T Consensus       376 v~~l------~g~i-YavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~-~~gv~~~~------g~iYi~GG~~~~~~  441 (571)
T KOG4441|consen  376 VAVL------DGKL-YAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRS-GHGVAVLG------GKLYIIGGGDGSSN  441 (571)
T ss_pred             eEEE------CCEE-EEEeccccccccccEEEecCCCCcccccCCCCccee-eeEEEEEC------CEEEEEcCcCCCcc
Confidence            1111      2222 222221     2467889999999999987611111 11456677      99999975 1    


Q ss_pred             --CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeec
Q 035663          217 --NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMV  294 (297)
Q Consensus       217 --g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v  294 (297)
                        ..+..||+..+.|....+|+.+       .....+.-.+|.|+.|+.+...        ...-.|-+.|.++.+|..+
T Consensus       442 ~l~sve~YDP~t~~W~~~~~M~~~-------R~~~g~a~~~~~iYvvGG~~~~--------~~~~~VE~ydp~~~~W~~v  506 (571)
T KOG4441|consen  442 CLNSVECYDPETNTWTLIAPMNTR-------RSGFGVAVLNGKIYVVGGFDGT--------SALSSVERYDPETNQWTMV  506 (571)
T ss_pred             ccceEEEEcCCCCceeecCCcccc-------cccceEEEECCEEEEECCccCC--------CccceEEEEcCCCCceeEc
Confidence              2688899999999863344441       1233477788999999988752        1222288899999999988


Q ss_pred             cc
Q 035663          295 NN  296 (297)
Q Consensus       295 ~~  296 (297)
                      ..
T Consensus       507 ~~  508 (571)
T KOG4441|consen  507 AP  508 (571)
T ss_pred             cc
Confidence            64

>PLN02153 epithiospecifier protein

Probab=98.06  E-value=0.0013  Score=58.72  Aligned_cols=201  Identities=13%  Similarity=0.067  Sum_probs=110.5

Q ss_pred             ceEEEecCCCcEEecCC-CCCCCC---ceEE-eeCCeEEEEeecCCC---ccEEEEcCCCCCeecCCCCCCC--CCceee
Q 035663           74 SCTFFNPKTKKFREIPL-PEVKGR---WVSC-SSHGWLLTVSCLDET---QNMFLLHPFTRSQVKLPPPPPG--TQLQFL  143 (297)
Q Consensus        74 ~~~~~~~~~~~~~~~~~-p~~~~~---~~~~-s~~Gwll~~~~~~~~---~~~~l~NP~T~~~i~LP~~~~~--~~~~~~  143 (297)
                      ....||+.+++|..++. +..+..   ...+ +.++-+.+.-+.+..   ..++.+||-|.+|..+|++...  +..+. 
T Consensus        51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~-  129 (341)
T PLN02153         51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEART-  129 (341)
T ss_pred             cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCce-
Confidence            46679999999987642 111111   1222 456666553222222   4789999999999988765211  10000 


Q ss_pred             cCceEEEecCCCCCCEEEEEEeCC-----------CCeEEEEecCCCceEeeccC--cccccCCcCeEEeCCccccCCeE
Q 035663          144 NGLRVITSTSPLDPDCLVLASLYV-----------SSKLAFCRPGDRNWTSIVHD--QYIRFTNTSAHFYDGRNCCKGYF  210 (297)
Q Consensus       144 ~~~~~~ls~~p~~~~~~Vv~~~~~-----------~~~l~~~~~g~~~W~~~~~~--~~~~~~~~d~v~~~~~~~~~G~~  210 (297)
                        ...+...    ++.+ .++.+.           ...+..|++..++|+.++.+  .......-.++.++      |++
T Consensus       130 --~~~~~~~----~~~i-yv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~------~~i  196 (341)
T PLN02153        130 --FHSMASD----ENHV-YVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQ------GKI  196 (341)
T ss_pred             --eeEEEEE----CCEE-EEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEEC------CeE
Confidence              0011111    1111 111111           13577899999999998764  11111111455667      999


Q ss_pred             EEecc--------------CCcEEEEecCCCCCCcee---cCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCC-CCC
Q 035663          211 YCLGS--------------CNFIFRIRFDHPHAPTAE---AMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHK-SYP  272 (297)
Q Consensus       211 Y~l~~--------------~g~i~~~d~~~~~~~~~~---~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~-~~~  272 (297)
                      |++..              ...+.+||+....|....   .+|.+       ....-.+-.+|+|++++-...... .+.
T Consensus       197 yv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~-------r~~~~~~~~~~~iyv~GG~~~~~~~~~~  269 (341)
T PLN02153        197 WVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA-------RSVFAHAVVGKYIIIFGGEVWPDLKGHL  269 (341)
T ss_pred             EEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCC-------cceeeeEEECCEEEEECcccCCcccccc
Confidence            98732              136899999999997511   12321       122334556789999987642100 000


Q ss_pred             CCceeeEEEEEEECCCCceeecc
Q 035663          273 CELTCAFIVCKLDLETEKWIMVN  295 (297)
Q Consensus       273 ~~~~~~~~V~~ld~~~~~W~~v~  295 (297)
                      ......-.||.+|.++++|.++.
T Consensus       270 ~~~~~~n~v~~~d~~~~~W~~~~  292 (341)
T PLN02153        270 GPGTLSNEGYALDTETLVWEKLG  292 (341)
T ss_pred             ccccccccEEEEEcCccEEEecc
Confidence            00112237999999999999875

>PLN02193 nitrile-specifier protein

Probab=97.90  E-value=0.0029  Score=58.96  Aligned_cols=204  Identities=11%  Similarity=0.060  Sum_probs=112.2

Q ss_pred             ceEEEecCCCcEEecCC----CCCCCCceEE-eeCCeEEEEeecCC---CccEEEEcCCCCCeecCCCCCCCCCceeecC
Q 035663           74 SCTFFNPKTKKFREIPL----PEVKGRWVSC-SSHGWLLTVSCLDE---TQNMFLLHPFTRSQVKLPPPPPGTQLQFLNG  145 (297)
Q Consensus        74 ~~~~~~~~~~~~~~~~~----p~~~~~~~~~-s~~Gwll~~~~~~~---~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~  145 (297)
                      ....||+.+.+|..++.    |......... ..++-|.+.-+.+.   ...++.+||-|.+|.++++....+..+.   
T Consensus       194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~---  270 (470)
T PLN02193        194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRS---  270 (470)
T ss_pred             cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCcc---
Confidence            46679999999987542    2211111122 45665555322221   2578999999999998877532111110   


Q ss_pred             ceEEEecCCCCCCEEEEEEeC-----CCCeEEEEecCCCceEeeccC--cccccCCcCeEEeCCccccCCeEEEecc-C-
Q 035663          146 LRVITSTSPLDPDCLVLASLY-----VSSKLAFCRPGDRNWTSIVHD--QYIRFTNTSAHFYDGRNCCKGYFYCLGS-C-  216 (297)
Q Consensus       146 ~~~~ls~~p~~~~~~Vv~~~~-----~~~~l~~~~~g~~~W~~~~~~--~~~~~~~~d~v~~~~~~~~~G~~Y~l~~-~-  216 (297)
                      ...+...    ++.+.+ +.+     ....+..|.+.+++|+.+...  .......-.++.++      |++|++.. + 
T Consensus       271 ~h~~~~~----~~~iYv-~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~------gkiyviGG~~g  339 (470)
T PLN02193        271 FHSMAAD----EENVYV-FGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQ------GKVWVVYGFNG  339 (470)
T ss_pred             ceEEEEE----CCEEEE-ECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEEC------CcEEEEECCCC
Confidence            0111111    222222 221     124577899999999988653  11101111345566      99998853 1 


Q ss_pred             ---CcEEEEecCCCCCCceecCCC-CCCccccCCceeEEeeeCCcEEEEEEEccCCC-CCCCCceeeEEEEEEECCCCce
Q 035663          217 ---NFIFRIRFDHPHAPTAEAMPF-KPHEYCCNARYNYLVELNSDLFIVSRFLIPHK-SYPCELTCAFIVCKLDLETEKW  291 (297)
Q Consensus       217 ---g~i~~~d~~~~~~~~~~~~p~-~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~-~~~~~~~~~~~V~~ld~~~~~W  291 (297)
                         ..+.+||+....|.....+.. +.+     ......+..+++|+++.-...... .+.......=.+|.+|.++++|
T Consensus       340 ~~~~dv~~yD~~t~~W~~~~~~g~~P~~-----R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W  414 (470)
T PLN02193        340 CEVDDVHYYDPVQDKWTQVETFGVRPSE-----RSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQW  414 (470)
T ss_pred             CccCceEEEECCCCEEEEeccCCCCCCC-----cceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEE
Confidence               379999999999975211211 111     122334566788998887653210 0000011223589999999999


Q ss_pred             eeccc
Q 035663          292 IMVNN  296 (297)
Q Consensus       292 ~~v~~  296 (297)
                      .++..
T Consensus       415 ~~~~~  419 (470)
T PLN02193        415 ERLDK  419 (470)
T ss_pred             EEccc
Confidence            98864

>PHA03098 kelch-like protein; Provisional

Probab=97.89  E-value=0.0018  Score=61.43  Aligned_cols=151  Identities=11%  Similarity=0.169  Sum_probs=92.8

Q ss_pred             ccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCC-----CCeEEEEecCCCceEeeccCccc
Q 035663          116 QNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYV-----SSKLAFCRPGDRNWTSIVHDQYI  190 (297)
Q Consensus       116 ~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~-----~~~l~~~~~g~~~W~~~~~~~~~  190 (297)
                      ..++.+||.|++|..+|+++.....      ..+.+.    ++.+ .++++.     ...+..|++.+++|+.....+..
T Consensus       311 ~~v~~yd~~~~~W~~~~~~~~~R~~------~~~~~~----~~~l-yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~  379 (534)
T PHA03098        311 NSVVSYDTKTKSWNKVPELIYPRKN------PGVTVF----NNRI-YVIGGIYNSISLNTVESWKPGESKWREEPPLIFP  379 (534)
T ss_pred             ccEEEEeCCCCeeeECCCCCccccc------ceEEEE----CCEE-EEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC
Confidence            4789999999999999987643211      011111    2222 222221     23567899999999988765221


Q ss_pred             ccCCcCeEEeCCccccCCeEEEeccC-------CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEE
Q 035663          191 RFTNTSAHFYDGRNCCKGYFYCLGSC-------NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSR  263 (297)
Q Consensus       191 ~~~~~d~v~~~~~~~~~G~~Y~l~~~-------g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~  263 (297)
                      +... ..+..+      |++|+++..       ..+..||+..+.|....++|.+.       .....+..+|+|++++.
T Consensus       380 r~~~-~~~~~~------~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-------~~~~~~~~~~~iyv~GG  445 (534)
T PHA03098        380 RYNP-CVVNVN------NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH-------YGGCAIYHDGKIYVIGG  445 (534)
T ss_pred             Cccc-eEEEEC------CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc-------cCceEEEECCEEEEECC
Confidence            1111 345566      999998651       25889999999997533344321       12234567899998886


Q ss_pred             EccCCCCCCCCceeeEEEEEEECCCCceeeccc
Q 035663          264 FLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN  296 (297)
Q Consensus       264 ~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~  296 (297)
                      ......     ...--.++..|.++++|.++..
T Consensus       446 ~~~~~~-----~~~~~~v~~yd~~~~~W~~~~~  473 (534)
T PHA03098        446 ISYIDN-----IKVYNIVESYNPVTNKWTELSS  473 (534)
T ss_pred             ccCCCC-----CcccceEEEecCCCCceeeCCC
Confidence            543210     0111238889999999998864

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=97.76  E-value=0.02  Score=51.07  Aligned_cols=121  Identities=11%  Similarity=0.132  Sum_probs=66.6

Q ss_pred             CeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC-------CcEEEEecC--CCCCCceecCCCCC
Q 035663          169 SKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC-------NFIFRIRFD--HPHAPTAEAMPFKP  239 (297)
Q Consensus       169 ~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~-------g~i~~~d~~--~~~~~~~~~~p~~~  239 (297)
                      ..+..|++..++|+.++.++........++.++      |++|++.-.       ..+..+|++  ...|....++|.+.
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~------~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r  241 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKG------NKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPK  241 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEEEEC------CEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCC
Confidence            468899999999999876522111111456667      999998531       235566654  44787533444311


Q ss_pred             CccccCCceeEEeeeCCcEEEEEEEccCCC-------C-C--C-CCceeeEEEEEEECCCCceeecccC
Q 035663          240 HEYCCNARYNYLVELNSDLFIVSRFLIPHK-------S-Y--P-CELTCAFIVCKLDLETEKWIMVNNI  297 (297)
Q Consensus       240 ~~~~~~~~~~~LVes~G~LllV~~~~~~~~-------~-~--~-~~~~~~~~V~~ld~~~~~W~~v~~L  297 (297)
                      ............+..+|+|++++-......       . +  . .......++|.  .++.+|+++..|
T Consensus       242 ~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd--~~~~~W~~~~~l  308 (346)
T TIGR03547       242 SSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYA--LDNGKWSKVGKL  308 (346)
T ss_pred             CCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEE--ecCCcccccCCC
Confidence            000001123346778999999987642100       0 0  0 00112355554  456789887654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PHA02790 Kelch-like protein; Provisional

Probab=97.57  E-value=0.0041  Score=58.15  Aligned_cols=141  Identities=11%  Similarity=0.130  Sum_probs=85.5

Q ss_pred             ccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeC--CCCeEEEEecCCCceEeeccCcccccC
Q 035663          116 QNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLY--VSSKLAFCRPGDRNWTSIVHDQYIRFT  193 (297)
Q Consensus       116 ~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~--~~~~l~~~~~g~~~W~~~~~~~~~~~~  193 (297)
                      ..+..+||.+++|.++|+++.....      ..+.+.    ++++ .++++  ....+..|.+..++|..++.+...+..
T Consensus       287 ~~v~~Ydp~~~~W~~~~~m~~~r~~------~~~v~~----~~~i-YviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~  355 (480)
T PHA02790        287 NNAIAVNYISNNWIPIPPMNSPRLY------ASGVPA----NNKL-YVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN  355 (480)
T ss_pred             CeEEEEECCCCEEEECCCCCchhhc------ceEEEE----CCEE-EEECCcCCCCceEEEECCCCeEEECCCCCCCCcc
Confidence            4678899999999999988654311      111111    2222 22222  124577899999999998876211111


Q ss_pred             CcCeEEeCCccccCCeEEEeccC----CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCC
Q 035663          194 NTSAHFYDGRNCCKGYFYCLGSC----NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHK  269 (297)
Q Consensus       194 ~~d~v~~~~~~~~~G~~Y~l~~~----g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~  269 (297)
                       -.++.++      |++|+++..    ..+..||+..+.|....+++.+.       .....+..+|+|++++..     
T Consensus       356 -~~~~~~~------g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r-------~~~~~~~~~~~IYv~GG~-----  416 (480)
T PHA02790        356 -PAVASIN------NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH-------YKSCALVFGRRLFLVGRN-----  416 (480)
T ss_pred             -cEEEEEC------CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc-------ccceEEEECCEEEEECCc-----
Confidence             1455667      999999652    24778999999997523344321       223456778999988621     


Q ss_pred             CCCCCceeeEEEEEEECCCCceeecccC
Q 035663          270 SYPCELTCAFIVCKLDLETEKWIMVNNI  297 (297)
Q Consensus       270 ~~~~~~~~~~~V~~ld~~~~~W~~v~~L  297 (297)
                               ..  ..|.++++|+.+.++
T Consensus       417 ---------~e--~ydp~~~~W~~~~~m  433 (480)
T PHA02790        417 ---------AE--FYCESSNTWTLIDDP  433 (480)
T ss_pred             ---------eE--EecCCCCcEeEcCCC
Confidence                     11  235567778776653

>PLN02153 epithiospecifier protein

Probab=97.55  E-value=0.034  Score=49.54  Aligned_cols=161  Identities=12%  Similarity=0.017  Sum_probs=88.9

Q ss_pred             ccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCC-----CCeEEEEecCCCceEeeccC---
Q 035663          116 QNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYV-----SSKLAFCRPGDRNWTSIVHD---  187 (297)
Q Consensus       116 ~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~-----~~~l~~~~~g~~~W~~~~~~---  187 (297)
                      ..++.+||.+.+|..+|+....+.....  ...+.+.    ++.+. ++.+.     ...+..|.+..++|+.++.+   
T Consensus        50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~--~~~~~~~----~~~iy-v~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~  122 (341)
T PLN02153         50 KDLYVFDFNTHTWSIAPANGDVPRISCL--GVRMVAV----GTKLY-IFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEE  122 (341)
T ss_pred             CcEEEEECCCCEEEEcCccCCCCCCccC--ceEEEEE----CCEEE-EECCCCCCCccCcEEEEECCCCEEEEeccCCCC
Confidence            4789999999999988875422111000  0011111    22222 22221     24678899999999987642   


Q ss_pred             --cccccCCcCeEEeCCccccCCeEEEeccC------------CcEEEEecCCCCCCceecCCCCCCccccCCceeEEee
Q 035663          188 --QYIRFTNTSAHFYDGRNCCKGYFYCLGSC------------NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVE  253 (297)
Q Consensus       188 --~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~------------g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVe  253 (297)
                        +..+. .-.++.++      +++|++.-.            ..+.+||+..+.|.....+..+..    .......+.
T Consensus       123 ~~p~~R~-~~~~~~~~------~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~----~r~~~~~~~  191 (341)
T PLN02153        123 GGPEART-FHSMASDE------NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFE----KRGGAGFAV  191 (341)
T ss_pred             CCCCCce-eeEEEEEC------CEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCC----CCCcceEEE
Confidence              11111 11445566      999998541            147889999998975111111011    112233556


Q ss_pred             eCCcEEEEEEEccCC--CCCCCCceeeEEEEEEECCCCceeeccc
Q 035663          254 LNSDLFIVSRFLIPH--KSYPCELTCAFIVCKLDLETEKWIMVNN  296 (297)
Q Consensus       254 s~G~LllV~~~~~~~--~~~~~~~~~~~~V~~ld~~~~~W~~v~~  296 (297)
                      .+|+++++.-.....  +...  ....-.|+.+|.++.+|++++.
T Consensus       192 ~~~~iyv~GG~~~~~~~gG~~--~~~~~~v~~yd~~~~~W~~~~~  234 (341)
T PLN02153        192 VQGKIWVVYGFATSILPGGKS--DYESNAVQFFDPASGKWTEVET  234 (341)
T ss_pred             ECCeEEEEeccccccccCCcc--ceecCceEEEEcCCCcEEeccc
Confidence            789999887553210  0000  1112357888999999999863

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=97.51  E-value=0.021  Score=51.69  Aligned_cols=111  Identities=15%  Similarity=0.152  Sum_probs=71.3

Q ss_pred             CeEEEEecCCCceEeeccC-cccccCCcCeEE-eCCccccCCeEEEeccC------------------------------
Q 035663          169 SKLAFCRPGDRNWTSIVHD-QYIRFTNTSAHF-YDGRNCCKGYFYCLGSC------------------------------  216 (297)
Q Consensus       169 ~~l~~~~~g~~~W~~~~~~-~~~~~~~~d~v~-~~~~~~~~G~~Y~l~~~------------------------------  216 (297)
                      ..+..|++..++|+.+... +...... ..+. .+      |++|++...                              
T Consensus       106 ~~v~~YD~~~n~W~~~~~~~p~~~~~~-~~~~~~~------~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~  178 (376)
T PRK14131        106 DDVYKYDPKTNSWQKLDTRSPVGLAGH-VAVSLHN------GKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYF  178 (376)
T ss_pred             ccEEEEeCCCCEEEeCCCCCCCcccce-EEEEeeC------CEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHh
Confidence            3567899999999998743 1111111 2222 56      999998542                              


Q ss_pred             ----------CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEEC
Q 035663          217 ----------NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDL  286 (297)
Q Consensus       217 ----------g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~  286 (297)
                                ..+.+||+..+.|...-++|.+      .......+..+|+|++++-.... +    .....+.+|++|.
T Consensus       179 ~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~------~~~~~a~v~~~~~iYv~GG~~~~-~----~~~~~~~~~~~~~  247 (376)
T PRK14131        179 DKKPEDYFFNKEVLSYDPSTNQWKNAGESPFL------GTAGSAVVIKGNKLWLINGEIKP-G----LRTDAVKQGKFTG  247 (376)
T ss_pred             cCChhhcCcCceEEEEECCCCeeeECCcCCCC------CCCcceEEEECCEEEEEeeeECC-C----cCChhheEEEecC
Confidence                      2588999999999852234431      11233567778999999976432 1    1345566777888


Q ss_pred             CCCceeecccC
Q 035663          287 ETEKWIMVNNI  297 (297)
Q Consensus       287 ~~~~W~~v~~L  297 (297)
                      ++.+|.++..+
T Consensus       248 ~~~~W~~~~~~  258 (376)
T PRK14131        248 NNLKWQKLPDL  258 (376)
T ss_pred             CCcceeecCCC
Confidence            88999988653

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=97.42  E-value=0.016  Score=51.67  Aligned_cols=167  Identities=11%  Similarity=0.071  Sum_probs=94.7

Q ss_pred             eeCCeEEEEeecCCCccEEEEcC--CCCCeecCCCCCC-CCCceeecCceEEEecCCCCCCEEEEEEeCC----------
Q 035663          101 SSHGWLLTVSCLDETQNMFLLHP--FTRSQVKLPPPPP-GTQLQFLNGLRVITSTSPLDPDCLVLASLYV----------  167 (297)
Q Consensus       101 s~~Gwll~~~~~~~~~~~~l~NP--~T~~~i~LP~~~~-~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~----------  167 (297)
                      ..++-|...-+. ....++.+|+  -+.+|.++|+++. ... .     ..+.+.    ++. +.++.+.          
T Consensus        15 ~~~~~vyv~GG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~R~-~-----~~~~~~----~~~-iYv~GG~~~~~~~~~~~   82 (346)
T TIGR03547        15 IIGDKVYVGLGS-AGTSWYKLDLKKPSKGWQKIADFPGGPRN-Q-----AVAAAI----DGK-LYVFGGIGKANSEGSPQ   82 (346)
T ss_pred             EECCEEEEEccc-cCCeeEEEECCCCCCCceECCCCCCCCcc-c-----ceEEEE----CCE-EEEEeCCCCCCCCCcce
Confidence            345545442211 1245677774  6788999998763 221 1     011111    111 2222221          


Q ss_pred             -CCeEEEEecCCCceEeeccC-cccccCCcCeE-EeCCccccCCeEEEeccC----------------------------
Q 035663          168 -SSKLAFCRPGDRNWTSIVHD-QYIRFTNTSAH-FYDGRNCCKGYFYCLGSC----------------------------  216 (297)
Q Consensus       168 -~~~l~~~~~g~~~W~~~~~~-~~~~~~~~d~v-~~~~~~~~~G~~Y~l~~~----------------------------  216 (297)
                       ...+..|.+..++|+.+... +..+... ..+ ..+      |++|++.-.                            
T Consensus        83 ~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~-~~~~~~~------g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (346)
T TIGR03547        83 VFDDVYRYDPKKNSWQKLDTRSPVGLLGA-SGFSLHN------GQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAA  155 (346)
T ss_pred             ecccEEEEECCCCEEecCCCCCCCcccce-eEEEEeC------CEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHH
Confidence             13567899999999998642 1111111 122 456      999998531                            


Q ss_pred             ------------CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEE
Q 035663          217 ------------NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKL  284 (297)
Q Consensus       217 ------------g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~l  284 (297)
                                  ..+.+||+..+.|...-++|.. .     ....-.+..+|+|++++-....  .   .....+.+|.+
T Consensus       156 ~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~-~-----r~~~~~~~~~~~iyv~GG~~~~--~---~~~~~~~~y~~  224 (346)
T TIGR03547       156 YFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFL-G-----TAGSAIVHKGNKLLLINGEIKP--G---LRTAEVKQYLF  224 (346)
T ss_pred             HhCCChhHcCccceEEEEECCCCceeECccCCCC-c-----CCCceEEEECCEEEEEeeeeCC--C---ccchheEEEEe
Confidence                        3588999999999852234431 1     1234566778999999876532  0   12345666777


Q ss_pred             ECCCCceeecccC
Q 035663          285 DLETEKWIMVNNI  297 (297)
Q Consensus       285 d~~~~~W~~v~~L  297 (297)
                      |.++.+|.++..+
T Consensus       225 ~~~~~~W~~~~~m  237 (346)
T TIGR03547       225 TGGKLEWNKLPPL  237 (346)
T ss_pred             cCCCceeeecCCC
Confidence            7788899987653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02193 nitrile-specifier protein

Probab=97.36  E-value=0.061  Score=50.21  Aligned_cols=154  Identities=14%  Similarity=0.037  Sum_probs=88.6

Q ss_pred             ccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeC-----CCCeEEEEecCCCceEeeccC---
Q 035663          116 QNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLY-----VSSKLAFCRPGDRNWTSIVHD---  187 (297)
Q Consensus       116 ~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~-----~~~~l~~~~~g~~~W~~~~~~---  187 (297)
                      ..++.+||-+.+|..+|+....+..+..  ...+.+.    ++.+.+ +.+     ....+..|.+..++|+.+..+   
T Consensus       193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~--~~~~v~~----~~~lYv-fGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~  265 (470)
T PLN02193        193 KHLYVFDLETRTWSISPATGDVPHLSCL--GVRMVSI----GSTLYV-FGGRDASRQYNGFYSFDTTTNEWKLLTPVEEG  265 (470)
T ss_pred             CcEEEEECCCCEEEeCCCCCCCCCCccc--ceEEEEE----CCEEEE-ECCCCCCCCCccEEEEECCCCEEEEcCcCCCC
Confidence            3588999999999887754322111000  0011111    222222 221     124678899999999987653   


Q ss_pred             cccccCCcCeEEeCCccccCCeEEEeccC------CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEE
Q 035663          188 QYIRFTNTSAHFYDGRNCCKGYFYCLGSC------NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIV  261 (297)
Q Consensus       188 ~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~------g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV  261 (297)
                      +..+.. -.++..+      +++|++.-.      ..+.+||+....|.. ++.|...+.   .....-++..+|+++++
T Consensus       266 P~~R~~-h~~~~~~------~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~---~R~~~~~~~~~gkiyvi  334 (470)
T PLN02193        266 PTPRSF-HSMAADE------ENVYVFGGVSATARLKTLDSYNIVDKKWFH-CSTPGDSFS---IRGGAGLEVVQGKVWVV  334 (470)
T ss_pred             CCCccc-eEEEEEC------CEEEEECCCCCCCCcceEEEEECCCCEEEe-CCCCCCCCC---CCCCcEEEEECCcEEEE
Confidence            111111 1445566      999998642      258899999998874 332221110   11223445568999988


Q ss_pred             EEEccCCCCCCCCceeeEEEEEEECCCCceeeccc
Q 035663          262 SRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN  296 (297)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~  296 (297)
                      .-....         ..-.|+.+|.++++|.++..
T Consensus       335 GG~~g~---------~~~dv~~yD~~t~~W~~~~~  360 (470)
T PLN02193        335 YGFNGC---------EVDDVHYYDPVQDKWTQVET  360 (470)
T ss_pred             ECCCCC---------ccCceEEEECCCCEEEEecc
Confidence            765321         12457888999999998853

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=97.35  E-value=0.088  Score=47.63  Aligned_cols=91  Identities=7%  Similarity=0.091  Sum_probs=52.4

Q ss_pred             CeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC-------CcEEE--EecCCCCCCceecCCCCC
Q 035663          169 SKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC-------NFIFR--IRFDHPHAPTAEAMPFKP  239 (297)
Q Consensus       169 ~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~-------g~i~~--~d~~~~~~~~~~~~p~~~  239 (297)
                      ..+..|++..+.|+.++..+........++.++      +++|++...       ..++.  +|+....|.....+|.+.
T Consensus       189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~------~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~  262 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKG------NKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAP  262 (376)
T ss_pred             ceEEEEECCCCeeeECCcCCCCCCCcceEEEEC------CEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCC
Confidence            468899999999999875532211122556667      999998631       13444  455667787523344321


Q ss_pred             Ccccc-CCceeEEeeeCCcEEEEEEEc
Q 035663          240 HEYCC-NARYNYLVELNSDLFIVSRFL  265 (297)
Q Consensus       240 ~~~~~-~~~~~~LVes~G~LllV~~~~  265 (297)
                      ..... .......+..+|+|++++-..
T Consensus       263 ~~~~~~~~~~~~a~~~~~~iyv~GG~~  289 (376)
T PRK14131        263 GGSSQEGVAGAFAGYSNGVLLVAGGAN  289 (376)
T ss_pred             cCCcCCccceEeceeECCEEEEeeccC
Confidence            10000 011223456789999888654

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=96.97  E-value=0.0088  Score=47.37  Aligned_cols=77  Identities=17%  Similarity=0.193  Sum_probs=51.7

Q ss_pred             cCCeEEEeccC--C----cEEEEecCCCCCCceecCCCCCCccccCCceeEE-eeeCCcEEEEEEEccCCCCCCCCceee
Q 035663          206 CKGYFYCLGSC--N----FIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYL-VELNSDLFIVSRFLIPHKSYPCELTCA  278 (297)
Q Consensus       206 ~~G~~Y~l~~~--g----~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~L-Ves~G~LllV~~~~~~~~~~~~~~~~~  278 (297)
                      ++|.+||++..  +    .|++||+..+.....+++|....   .......| +-.+|.|.++....         .+..
T Consensus         4 vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~---~~~~~~~L~~v~~~~L~~~~~~~---------~~~~   71 (164)
T PF07734_consen    4 VNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCND---DDDDSVSLSVVRGDCLCVLYQCD---------ETSK   71 (164)
T ss_pred             ECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccC---ccCCEEEEEEecCCEEEEEEecc---------CCcc
Confidence            34999999863  2    49999999998843366665322   12345666 34467788886532         2456


Q ss_pred             EEEEEEEC---CCCceeec
Q 035663          279 FIVCKLDL---ETEKWIMV  294 (297)
Q Consensus       279 ~~V~~ld~---~~~~W~~v  294 (297)
                      +.||.+++   ....|+|+
T Consensus        72 ~~IWvm~~~~~~~~SWtK~   90 (164)
T PF07734_consen   72 IEIWVMKKYGYGKESWTKL   90 (164)
T ss_pred             EEEEEEeeeccCcceEEEE
Confidence            99999974   25789886

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.00032  Score=59.77  Aligned_cols=41  Identities=34%  Similarity=0.622  Sum_probs=37.7

Q ss_pred             CCCCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhhh
Q 035663            6 LSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLY   50 (297)
Q Consensus         6 ~~ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~   50 (297)
                      ..|-+||+|++..|+.-| +.+++++   +..|||.|+.+.++..
T Consensus        96 v~~~slpDEill~IFs~L-~kk~LL~---~~~VC~Rfyr~~~de~  136 (419)
T KOG2120|consen   96 VSWDSLPDEILLGIFSCL-CKKELLK---VSGVCKRFYRLASDES  136 (419)
T ss_pred             CCcccCCHHHHHHHHHhc-cHHHHHH---HHHHHHHHhhcccccc
Confidence            349999999999999999 9999999   9999999999987654

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=96.94  E-value=0.19  Score=44.31  Aligned_cols=169  Identities=15%  Similarity=0.098  Sum_probs=94.6

Q ss_pred             ceEEEecCCCcE----Eec-CCCCCCCCceEE-eeCCeEEEEeecC---CCccEEEEcCCCCCeecCCCCCC-CCCceee
Q 035663           74 SCTFFNPKTKKF----REI-PLPEVKGRWVSC-SSHGWLLTVSCLD---ETQNMFLLHPFTRSQVKLPPPPP-GTQLQFL  143 (297)
Q Consensus        74 ~~~~~~~~~~~~----~~~-~~p~~~~~~~~~-s~~Gwll~~~~~~---~~~~~~l~NP~T~~~i~LP~~~~-~~~~~~~  143 (297)
                      ....||+.+++|    ..+ ++|.. ...... ..+|-+...-+..   ....++.+||-|.+|..+|+.+. ....   
T Consensus        89 ~v~~~d~~~~~w~~~~~~~~~lp~~-~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~---  164 (323)
T TIGR03548        89 SVYRITLDESKEELICETIGNLPFT-FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQ---  164 (323)
T ss_pred             eEEEEEEcCCceeeeeeEcCCCCcC-ccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCc---
Confidence            455688888776    222 23331 112222 4567665532221   12578999999999999987542 2111   


Q ss_pred             cCceEEEecCCCCCCEEEEEEeCCC----CeEEEEecCCCceEeeccCc---cc--ccCCcCeEEeCCccccCCeEEEec
Q 035663          144 NGLRVITSTSPLDPDCLVLASLYVS----SKLAFCRPGDRNWTSIVHDQ---YI--RFTNTSAHFYDGRNCCKGYFYCLG  214 (297)
Q Consensus       144 ~~~~~~ls~~p~~~~~~Vv~~~~~~----~~l~~~~~g~~~W~~~~~~~---~~--~~~~~d~v~~~~~~~~~G~~Y~l~  214 (297)
                         .++.+.    ++. +.++.+.+    ..+..|++..++|+.+..+.   ..  ......++..+      |++|++.
T Consensus       165 ---~~~~~~----~~~-iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~------~~iyv~G  230 (323)
T TIGR03548       165 ---PVCVKL----QNE-LYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINE------SLLLCIG  230 (323)
T ss_pred             ---ceEEEE----CCE-EEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECC------CEEEEEC
Confidence               111111    122 22222211    23568999999999987641   00  00111233445      8899875


Q ss_pred             cC--------------------------------------CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCC
Q 035663          215 SC--------------------------------------NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNS  256 (297)
Q Consensus       215 ~~--------------------------------------g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G  256 (297)
                      ..                                      ..+.+||+..+.|...-.+|..      ......++..+|
T Consensus       231 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~------~r~~~~~~~~~~  304 (323)
T TIGR03548       231 GFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFF------ARCGAALLLTGN  304 (323)
T ss_pred             CcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccccc------ccCchheEEECC
Confidence            31                                      2589999999999752223321      123345788899


Q ss_pred             cEEEEEEEcc
Q 035663          257 DLFIVSRFLI  266 (297)
Q Consensus       257 ~LllV~~~~~  266 (297)
                      +|++++-..+
T Consensus       305 ~iyv~GG~~~  314 (323)
T TIGR03548       305 NIFSINGELK  314 (323)
T ss_pred             EEEEEecccc
Confidence            9999987654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=96.87  E-value=0.078  Score=46.83  Aligned_cols=105  Identities=15%  Similarity=0.126  Sum_probs=65.4

Q ss_pred             eEEEEecCCCce----EeeccCcccccCCcCeEEeCCccccCCeEEEeccC------CcEEEEecCCCCCCceecCCCCC
Q 035663          170 KLAFCRPGDRNW----TSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC------NFIFRIRFDHPHAPTAEAMPFKP  239 (297)
Q Consensus       170 ~l~~~~~g~~~W----~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~------g~i~~~d~~~~~~~~~~~~p~~~  239 (297)
                      .+..|......|    +.++..+..+.. -..+.++      |++|++...      ..+.+||+..+.|....++|...
T Consensus        89 ~v~~~d~~~~~w~~~~~~~~~lp~~~~~-~~~~~~~------~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~  161 (323)
T TIGR03548        89 SVYRITLDESKEELICETIGNLPFTFEN-GSACYKD------GTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP  161 (323)
T ss_pred             eEEEEEEcCCceeeeeeEcCCCCcCccC-ceEEEEC------CEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC
Confidence            456677777777    444443111111 1455667      999998642      26999999999997522344311


Q ss_pred             CccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeeccc
Q 035663          240 HEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN  296 (297)
Q Consensus       240 ~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~  296 (297)
                            ......+..+|+|++++-....         ....+++.|.++++|.++..
T Consensus       162 ------r~~~~~~~~~~~iYv~GG~~~~---------~~~~~~~yd~~~~~W~~~~~  203 (323)
T TIGR03548       162 ------RVQPVCVKLQNELYVFGGGSNI---------AYTDGYKYSPKKNQWQKVAD  203 (323)
T ss_pred             ------CCcceEEEECCEEEEEcCCCCc---------cccceEEEecCCCeeEECCC
Confidence                  1223446778999988865321         12346788999999998864

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=94.51  E-value=1.5  Score=39.46  Aligned_cols=113  Identities=14%  Similarity=0.179  Sum_probs=72.1

Q ss_pred             CCeEEEEecCCCceEeeccC--cccccCCcCeEEeCCccccCCeEEEecc-----C-------CcEEEEecCCCCCCcee
Q 035663          168 SSKLAFCRPGDRNWTSIVHD--QYIRFTNTSAHFYDGRNCCKGYFYCLGS-----C-------NFIFRIRFDHPHAPTAE  233 (297)
Q Consensus       168 ~~~l~~~~~g~~~W~~~~~~--~~~~~~~~d~v~~~~~~~~~G~~Y~l~~-----~-------g~i~~~d~~~~~~~~~~  233 (297)
                      .+.|.+|.....+|+.+..+  +..+... .+|....     |.+|....     +       ..++.||+....|.. +
T Consensus        97 YndLy~Yn~k~~eWkk~~spn~P~pRssh-q~va~~s-----~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweq-l  169 (521)
T KOG1230|consen   97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSH-QAVAVPS-----NILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQ-L  169 (521)
T ss_pred             eeeeeEEeccccceeEeccCCCcCCCccc-eeEEecc-----CeEEEeccccCCcchhhhhhhhheeeeeeccchhee-e
Confidence            35678899999999998876  2222222 3333321     55555431     1       269999999998875 4


Q ss_pred             cCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeecc
Q 035663          234 AMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVN  295 (297)
Q Consensus       234 ~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~  295 (297)
                      ..+....    ..+...+|.+--+|++.+-+.+..+.    ..--=+||-+|.++-+|.+++
T Consensus       170 ~~~g~PS----~RSGHRMvawK~~lilFGGFhd~nr~----y~YyNDvy~FdLdtykW~Kle  223 (521)
T KOG1230|consen  170 EFGGGPS----PRSGHRMVAWKRQLILFGGFHDSNRD----YIYYNDVYAFDLDTYKWSKLE  223 (521)
T ss_pred             ccCCCCC----CCccceeEEeeeeEEEEcceecCCCc----eEEeeeeEEEeccceeeeecc
Confidence            4433111    23456788899999999988765322    223346777777788998875

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=94.05  E-value=5  Score=37.67  Aligned_cols=157  Identities=15%  Similarity=0.074  Sum_probs=87.0

Q ss_pred             ccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeC-----CCCeEEEEecCCCceEeeccC---
Q 035663          116 QNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLY-----VSSKLAFCRPGDRNWTSIVHD---  187 (297)
Q Consensus       116 ~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~-----~~~~l~~~~~g~~~W~~~~~~---  187 (297)
                      ..++.+|+.|++|..+.+....+..+.  .+.++..     ++++++.-..     ..+.+++|+..+..|..+...   
T Consensus       139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~--~Hs~~~~-----g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~  211 (482)
T KOG0379|consen  139 NELHSLDLSTRTWSLLSPTGDPPPPRA--GHSATVV-----GTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEA  211 (482)
T ss_pred             hheEeccCCCCcEEEecCcCCCCCCcc--cceEEEE-----CCEEEEECCccCcccceeeeeeeccccccceecccCCCC
Confidence            489999999999987766543211110  0011111     2333332211     135788999999999998865   


Q ss_pred             cccccCCcCeEEeCCccccCCeEEEecc-C------CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEE
Q 035663          188 QYIRFTNTSAHFYDGRNCCKGYFYCLGS-C------NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFI  260 (297)
Q Consensus       188 ~~~~~~~~d~v~~~~~~~~~G~~Y~l~~-~------g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~Lll  260 (297)
                      +..+... .++..+      ++++.+.. +      +.++.+|+....|.. .+.-...+.   ......++-++..+++
T Consensus       212 P~pR~gH-~~~~~~------~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~-~~~~g~~p~---~R~~h~~~~~~~~~~l  280 (482)
T KOG0379|consen  212 PSPRYGH-AMVVVG------NKLLVFGGGDDGDVYLNDVHILDLSTWEWKL-LPTGGDLPS---PRSGHSLTVSGDHLLL  280 (482)
T ss_pred             CCCCCCc-eEEEEC------CeEEEEeccccCCceecceEeeecccceeee-ccccCCCCC---CcceeeeEEECCEEEE
Confidence            1111111 455565      67666543 1      379999999977763 111110110   1234556644444666


Q ss_pred             EEEEccCCCCCCCCceeeEEEEEEECCCCceeeccc
Q 035663          261 VSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN  296 (297)
Q Consensus       261 V~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~  296 (297)
                      ++-....      ....--++|.||.++..|.+++.
T Consensus       281 ~gG~~~~------~~~~l~~~~~l~~~~~~w~~~~~  310 (482)
T KOG0379|consen  281 FGGGTDP------KQEPLGDLYGLDLETLVWSKVES  310 (482)
T ss_pred             EcCCccc------ccccccccccccccccceeeeec
Confidence            6544431      01145567888888888988764

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=93.87  E-value=0.21  Score=30.04  Aligned_cols=43  Identities=14%  Similarity=0.141  Sum_probs=35.3

Q ss_pred             eeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeecccC
Q 035663          248 YNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNNI  297 (297)
Q Consensus       248 ~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~L  297 (297)
                      ....+..+|+|++++-....       ....-.|+++|.++++|+++.+|
T Consensus         4 ~~~~~~~~~~iyv~GG~~~~-------~~~~~~v~~yd~~~~~W~~~~~m   46 (47)
T PF01344_consen    4 GHAAVVVGNKIYVIGGYDGN-------NQPTNSVEVYDPETNTWEELPPM   46 (47)
T ss_dssp             SEEEEEETTEEEEEEEBEST-------SSBEEEEEEEETTTTEEEEEEEE
T ss_pred             cCEEEEECCEEEEEeeeccc-------CceeeeEEEEeCCCCEEEEcCCC
Confidence            35677888999999988862       46778899999999999998764

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13964 Kelch_6: Kelch motif

Probab=92.78  E-value=0.2  Score=30.71  Aligned_cols=42  Identities=14%  Similarity=0.215  Sum_probs=33.3

Q ss_pred             eEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeecccC
Q 035663          249 NYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNNI  297 (297)
Q Consensus       249 ~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~L  297 (297)
                      ...|..+|+|++++-....       ....-.|+++|.++++|+++.++
T Consensus         5 ~s~v~~~~~iyv~GG~~~~-------~~~~~~v~~yd~~t~~W~~~~~m   46 (50)
T PF13964_consen    5 HSAVVVGGKIYVFGGYDNS-------GKYSNDVERYDPETNTWEQLPPM   46 (50)
T ss_pred             CEEEEECCEEEEECCCCCC-------CCccccEEEEcCCCCcEEECCCC
Confidence            4567888999999877752       34567889999999999998764

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=92.45  E-value=0.06  Score=46.37  Aligned_cols=40  Identities=28%  Similarity=0.424  Sum_probs=34.4

Q ss_pred             CCCCcHHHHHHHHhhc----CCchhhhccccccccChhHHHhhhhhh
Q 035663            8 WSSLPDELLSVIIQKL----IDSDDILNCAVCAAVCSSWQSVVKDLY   50 (297)
Q Consensus         8 ws~LP~dll~~I~~rL----~~~~d~~r~~~~~~VCk~Wr~~~~~~~   50 (297)
                      .+.||+|+|..|+++.    -+..++-+   +.+|||.|+-++.++.
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~---~s~vCr~F~~~~R~~~  150 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQ---LSLVCRGFYKCARDPE  150 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHH---hHhhHHHHHHHHcChH
Confidence            4679999999999876    15688999   9999999999998775

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=91.88  E-value=1.3  Score=37.58  Aligned_cols=108  Identities=13%  Similarity=0.230  Sum_probs=64.6

Q ss_pred             CeEEEEecCCCceEeeccC----cccccCCcCeEEeCCccccCCeEEEec-------------c--CCcEEEEecCCCCC
Q 035663          169 SKLAFCRPGDRNWTSIVHD----QYIRFTNTSAHFYDGRNCCKGYFYCLG-------------S--CNFIFRIRFDHPHA  229 (297)
Q Consensus       169 ~~l~~~~~g~~~W~~~~~~----~~~~~~~~d~v~~~~~~~~~G~~Y~l~-------------~--~g~i~~~d~~~~~~  229 (297)
                      ..+.........|+.+...    .+..|-  ....++      |.+|...             .  ...|.++|+..+.|
T Consensus       157 ~d~h~ld~~TmtWr~~~Tkg~PprwRDFH--~a~~~~------~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW  228 (392)
T KOG4693|consen  157 QDTHVLDFATMTWREMHTKGDPPRWRDFH--TASVID------GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAW  228 (392)
T ss_pred             ccceeEeccceeeeehhccCCCchhhhhh--hhhhcc------ceEEEeccccccCCCccchhhhhcceeEEEecccccc
Confidence            4556677778899987753    111000  233334      6666553             1  23699999999999


Q ss_pred             CceecCCCCC-CccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeecc
Q 035663          230 PTAEAMPFKP-HEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVN  295 (297)
Q Consensus       230 ~~~~~~p~~~-~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~  295 (297)
                      .. .+ +.++ ++   +.++..-.-.+|++++.+-+...-      ...--++|..|..+..|..++
T Consensus       229 ~r-~p-~~~~~P~---GRRSHS~fvYng~~Y~FGGYng~l------n~HfndLy~FdP~t~~W~~I~  284 (392)
T KOG4693|consen  229 TR-TP-ENTMKPG---GRRSHSTFVYNGKMYMFGGYNGTL------NVHFNDLYCFDPKTSMWSVIS  284 (392)
T ss_pred             cc-CC-CCCcCCC---cccccceEEEcceEEEecccchhh------hhhhcceeecccccchheeee
Confidence            75 21 1111 11   234455557899999999887530      112246788888888887654

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=91.43  E-value=3.7  Score=38.51  Aligned_cols=108  Identities=15%  Similarity=0.083  Sum_probs=69.8

Q ss_pred             CeEEEEecCCCceEeeccC-c--ccccCCcCeEEeCCccccCCeEEEecc-------CCcEEEEecCCCCCCc-eecCCC
Q 035663          169 SKLAFCRPGDRNWTSIVHD-Q--YIRFTNTSAHFYDGRNCCKGYFYCLGS-------CNFIFRIRFDHPHAPT-AEAMPF  237 (297)
Q Consensus       169 ~~l~~~~~g~~~W~~~~~~-~--~~~~~~~d~v~~~~~~~~~G~~Y~l~~-------~g~i~~~d~~~~~~~~-~~~~p~  237 (297)
                      ..+..|+..+.+|+.+... .  -.+... .++.++      .++|+..-       ...++++|+....|.. .+.-+.
T Consensus       139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~H-s~~~~g------~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~  211 (482)
T KOG0379|consen  139 NELHSLDLSTRTWSLLSPTGDPPPPRAGH-SATVVG------TKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEA  211 (482)
T ss_pred             hheEeccCCCCcEEEecCcCCCCCCcccc-eEEEEC------CEEEEECCccCcccceeeeeeeccccccceecccCCCC
Confidence            4788999999999988754 1  011100 344444      67777643       2379999999999975 111111


Q ss_pred             CCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeecc
Q 035663          238 KPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVN  295 (297)
Q Consensus       238 ~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~  295 (297)
                      |.+     ....-.+..+++++++.-....       ...-=++|.||..+.+|.++.
T Consensus       212 P~p-----R~gH~~~~~~~~~~v~gG~~~~-------~~~l~D~~~ldl~~~~W~~~~  257 (482)
T KOG0379|consen  212 PSP-----RYGHAMVVVGNKLLVFGGGDDG-------DVYLNDVHILDLSTWEWKLLP  257 (482)
T ss_pred             CCC-----CCCceEEEECCeEEEEeccccC-------CceecceEeeecccceeeecc
Confidence            111     2345667777888888877632       355678899999889998653

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=90.75  E-value=0.66  Score=28.28  Aligned_cols=43  Identities=16%  Similarity=0.261  Sum_probs=31.9

Q ss_pred             eEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeeccc
Q 035663          249 NYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN  296 (297)
Q Consensus       249 ~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~  296 (297)
                      ...+..+|+|++++-+...     ......-+|+.+|.++.+|.++..
T Consensus         5 hs~~~~~~kiyv~GG~~~~-----~~~~~~~~v~~~d~~t~~W~~~~~   47 (49)
T PF07646_consen    5 HSAVVLDGKIYVFGGYGTD-----NGGSSSNDVWVFDTETNQWTELSP   47 (49)
T ss_pred             eEEEEECCEEEEECCcccC-----CCCcccceeEEEECCCCEEeecCC
Confidence            3455678999999988211     014567789999999999999875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=90.66  E-value=0.64  Score=26.96  Aligned_cols=24  Identities=13%  Similarity=0.122  Sum_probs=18.4

Q ss_pred             CeEEeCCccccCCeEEEeccCCcEEEEecC
Q 035663          196 SAHFYDGRNCCKGYFYCLGSCNFIFRIRFD  225 (297)
Q Consensus       196 d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~  225 (297)
                      .+++.+      |++|+.+.+|.+++||..
T Consensus        16 ~~~v~~------g~vyv~~~dg~l~ald~~   39 (40)
T PF13570_consen   16 SPAVAG------GRVYVGTGDGNLYALDAA   39 (40)
T ss_dssp             --EECT------SEEEEE-TTSEEEEEETT
T ss_pred             CCEEEC------CEEEEEcCCCEEEEEeCC
Confidence            556666      999999999999999975

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=90.12  E-value=11  Score=32.31  Aligned_cols=147  Identities=12%  Similarity=0.082  Sum_probs=76.7

Q ss_pred             ceEE-eeCCeEEEEeecCCCccEEEEcCCCCCeecCCCCCCCC-CceeecCceEEEecCCCCCCEEEEEEeC-CCCeEEE
Q 035663           97 WVSC-SSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGT-QLQFLNGLRVITSTSPLDPDCLVLASLY-VSSKLAF  173 (297)
Q Consensus        97 ~~~~-s~~Gwll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~-~~~~~~~~~~~ls~~p~~~~~~Vv~~~~-~~~~l~~  173 (297)
                      .-+| +.+|=|-+..  -..+.+..+||+++..-.+|.+.... ..+       .++.||-..    +.+.. ....+..
T Consensus       192 yGi~atpdGsvwyas--lagnaiaridp~~~~aev~p~P~~~~~gsR-------riwsdpig~----~wittwg~g~l~r  258 (353)
T COG4257         192 YGICATPDGSVWYAS--LAGNAIARIDPFAGHAEVVPQPNALKAGSR-------RIWSDPIGR----AWITTWGTGSLHR  258 (353)
T ss_pred             cceEECCCCcEEEEe--ccccceEEcccccCCcceecCCCccccccc-------ccccCccCc----EEEeccCCceeeE
Confidence            3566 7788666621  12467889999999766666655421 111       123344321    22222 2467788


Q ss_pred             EecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEecc-CCcEEEEecCCCCCCceecCCCCCCcc---ccCCcee
Q 035663          174 CRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGS-CNFIFRIRFDHPHAPTAEAMPFKPHEY---CCNARYN  249 (297)
Q Consensus       174 ~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~-~g~i~~~d~~~~~~~~~~~~p~~~~~~---~~~~~~~  249 (297)
                      |++.+.+|...+-+......  +.++-+    -+|+++.-+- .|.|..||.....+.. .+.|.+..+-   .......
T Consensus       259 fdPs~~sW~eypLPgs~arp--ys~rVD----~~grVW~sea~agai~rfdpeta~ftv-~p~pr~n~gn~ql~gr~ge~  331 (353)
T COG4257         259 FDPSVTSWIEYPLPGSKARP--YSMRVD----RHGRVWLSEADAGAIGRFDPETARFTV-LPIPRPNSGNIQLDGRPGEL  331 (353)
T ss_pred             eCcccccceeeeCCCCCCCc--ceeeec----cCCcEEeeccccCceeecCcccceEEE-ecCCCCCCCceeccCCCCce
Confidence            99999999987654000000  222222    1277665443 4689999977665442 3444422110   1112345


Q ss_pred             EEeeeC-CcEEEEEE
Q 035663          250 YLVELN-SDLFIVSR  263 (297)
Q Consensus       250 ~LVes~-G~LllV~~  263 (297)
                      ++.|.+ .+|+++..
T Consensus       332 W~~e~gvd~lv~~r~  346 (353)
T COG4257         332 WFTEAGVDALVTTRI  346 (353)
T ss_pred             eecccCcceeEEEEe
Confidence            566666 44444443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=89.31  E-value=0.24  Score=44.59  Aligned_cols=40  Identities=33%  Similarity=0.563  Sum_probs=35.9

Q ss_pred             CCCCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhhh
Q 035663            6 LSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLY   50 (297)
Q Consensus         6 ~~ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~   50 (297)
                      -.|+ ||+|++..|++.| +.+.+.|   ++.||+.|.-.+.+-.
T Consensus        71 ~~~~-LPpEl~lkvFS~L-Dtksl~r---~a~~c~~~n~~AlD~~  110 (483)
T KOG4341|consen   71 ISRS-LPPELLLKVFSML-DTKSLCR---AAQCCTMWNKLALDGS  110 (483)
T ss_pred             cccc-CCHHHHHHHHHHH-hHHHHHH---HHHHHHHhhhhhhccc
Confidence            3455 9999999999999 9999999   9999999999887764

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=88.74  E-value=1  Score=27.31  Aligned_cols=36  Identities=11%  Similarity=0.214  Sum_probs=22.3

Q ss_pred             CCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeecccC
Q 035663          255 NSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNNI  297 (297)
Q Consensus       255 ~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~L  297 (297)
                      +++|++++-....       ...-=++|.+|.++++|.++.++
T Consensus        12 ~~~i~v~GG~~~~-------~~~~~d~~~~d~~~~~W~~~~~~   47 (49)
T PF13418_consen   12 DNSIYVFGGRDSS-------GSPLNDLWIFDIETNTWTRLPSM   47 (49)
T ss_dssp             TTEEEEE--EEE--------TEE---EEEEETTTTEEEE--SS
T ss_pred             CCeEEEECCCCCC-------CcccCCEEEEECCCCEEEECCCC
Confidence            3788888877753       24566789999999999998653

>KOG2502 consensus Tub family proteins [General function prediction only]

Probab=87.81  E-value=0.34  Score=42.40  Aligned_cols=42  Identities=33%  Similarity=0.837  Sum_probs=34.4

Q ss_pred             CCCCCCcHHHHHHHHhhcCCc-------hhhhccccccccChhHHHhhhhhh
Q 035663            6 LSWSSLPDELLSVIIQKLIDS-------DDILNCAVCAAVCSSWQSVVKDLY   50 (297)
Q Consensus         6 ~~ws~LP~dll~~I~~rL~~~-------~d~~r~~~~~~VCk~Wr~~~~~~~   50 (297)
                      ..|++||+++|..|+.|..-.       .+.+.   +..||+.||....+..
T Consensus        43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs---~~~~~~~~r~~~~~~v   91 (355)
T KOG2502|consen   43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVS---CAGVCDKWREISKEIV   91 (355)
T ss_pred             chhhcCCHhHHHHHhhhcccccccccccccccc---ccchhhhhhhhccccc
Confidence            579999999999999999422       24566   8999999999877654

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=87.69  E-value=16  Score=31.28  Aligned_cols=177  Identities=14%  Similarity=0.160  Sum_probs=89.4

Q ss_pred             eEEeeCCeEEEEe-ecCCCccEEEEcCCCCCeecCCCCCCCCCce----eec----CceEEEecCCCCCCEEEEEEeCC-
Q 035663           98 VSCSSHGWLLTVS-CLDETQNMFLLHPFTRSQVKLPPPPPGTQLQ----FLN----GLRVITSTSPLDPDCLVLASLYV-  167 (297)
Q Consensus        98 ~~~s~~Gwll~~~-~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~----~~~----~~~~~ls~~p~~~~~~Vv~~~~~-  167 (297)
                      ++.|.+|+.--.. ...+.-++.++|--+-+|+.+||-.....++    .+.    ...++. .    ++-+-++-... 
T Consensus        25 riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~-y----~d~~yvWGGRND   99 (392)
T KOG4693|consen   25 RIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVE-Y----QDKAYVWGGRND   99 (392)
T ss_pred             eEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEE-E----cceEEEEcCccC
Confidence            3336677544410 0112257899999999999999832111111    000    000111 1    11111221111 


Q ss_pred             ----CCeEEEEecCCCceEeeccCccc---ccCCcCeEEeCCccccCCeEEEecc--------CCcEEEEecCCCCCCc-
Q 035663          168 ----SSKLAFCRPGDRNWTSIVHDQYI---RFTNTSAHFYDGRNCCKGYFYCLGS--------CNFIFRIRFDHPHAPT-  231 (297)
Q Consensus       168 ----~~~l~~~~~g~~~W~~~~~~~~~---~~~~~d~v~~~~~~~~~G~~Y~l~~--------~g~i~~~d~~~~~~~~-  231 (297)
                          .+.+.-|++....|+..+...+.   +... +.+..+      +.+|....        +..+.++|++..+|.. 
T Consensus       100 ~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGH-sAcV~g------n~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~  172 (392)
T KOG4693|consen  100 DEGACNLLYEFDPETNVWKKPEVEGFVPGARDGH-SACVWG------NQMYIFGGYEEDAQRFSQDTHVLDFATMTWREM  172 (392)
T ss_pred             cccccceeeeeccccccccccceeeecCCccCCc-eeeEEC------cEEEEecChHHHHHhhhccceeEeccceeeeeh
Confidence                12445588999999987654111   1111 345556      77887753        2379999999999874 


Q ss_pred             e--ecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCC-CCceeeEEEEEEECCCCceee
Q 035663          232 A--EAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYP-CELTCAFIVCKLDLETEKWIM  293 (297)
Q Consensus       232 ~--~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~-~~~~~~~~V~~ld~~~~~W~~  293 (297)
                      .  -.+|.    |   .....-+..+|+.++.+-..+..+.+. ....-.-.|-.||..++.|.+
T Consensus       173 ~Tkg~Ppr----w---RDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r  230 (392)
T KOG4693|consen  173 HTKGDPPR----W---RDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTR  230 (392)
T ss_pred             hccCCCch----h---hhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEecccccccc
Confidence            1  12222    1   011112233466666665554433221 112334566778888888865

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=86.94  E-value=0.38  Score=42.07  Aligned_cols=38  Identities=32%  Similarity=0.680  Sum_probs=34.3

Q ss_pred             CCCc----HHHHHHHHhhcCCchhhhccccccccChhHHHhhhhhh
Q 035663            9 SSLP----DELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLY   50 (297)
Q Consensus         9 s~LP----~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~   50 (297)
                      +.||    +++.+.|+..| +..++-.   +..|||.|+.++.++-
T Consensus        76 ~~lP~~gl~hi~e~ilsyl-d~~sLc~---celv~k~W~r~l~dg~  117 (499)
T KOG0281|consen   76 TALPEQGLDHIAENILSYL-DALSLCA---CELVCKEWKRVLSDGM  117 (499)
T ss_pred             HhcccccHHHHHHHHHHhc-chhhhhH---HHHHHHHHHHHhccch
Confidence            3588    89999999999 9999999   9999999999988764

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=85.37  E-value=26  Score=31.12  Aligned_cols=91  Identities=13%  Similarity=0.043  Sum_probs=46.9

Q ss_pred             CeEEeCCc-cccCCeEEEeccCCcEEEEecCCCCCCc--eecC-CC--CCCccccCCceeEEee-eCCcEEEEEEEccCC
Q 035663          196 SAHFYDGR-NCCKGYFYCLGSCNFIFRIRFDHPHAPT--AEAM-PF--KPHEYCCNARYNYLVE-LNSDLFIVSRFLIPH  268 (297)
Q Consensus       196 d~v~~~~~-~~~~G~~Y~l~~~g~i~~~d~~~~~~~~--~~~~-p~--~~~~~~~~~~~~~LVe-s~G~LllV~~~~~~~  268 (297)
                      |.++.++. ..-+|.+|+++++|.|+.+|++......  ...+ ..  .-.+|..+.-...=+. -.|+|++. +....+
T Consensus       183 dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvL-Mh~g~~  261 (342)
T PF06433_consen  183 DPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVL-MHQGGE  261 (342)
T ss_dssp             S-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEE-EEE--T
T ss_pred             cccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEE-ecCCCC
Confidence            44444322 2344899999999999999999886432  1111 10  0124432222222222 33667754 443332


Q ss_pred             CCCCCCceeeEEEEEEECCCCc
Q 035663          269 KSYPCELTCAFIVCKLDLETEK  290 (297)
Q Consensus       269 ~~~~~~~~~~~~V~~ld~~~~~  290 (297)
                      +.+   +...-+||.+|.++++
T Consensus       262 gsH---KdpgteVWv~D~~t~k  280 (342)
T PF06433_consen  262 GSH---KDPGTEVWVYDLKTHK  280 (342)
T ss_dssp             T-T---TS-EEEEEEEETTTTE
T ss_pred             CCc---cCCceEEEEEECCCCe
Confidence            333   4667889999998764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=85.01  E-value=24  Score=32.38  Aligned_cols=150  Identities=13%  Similarity=0.162  Sum_probs=80.2

Q ss_pred             CCCCCCeEecccccccCCCcceEEEecCCCc---EEecCCCCCCCCceEEeeCCe-EEEEeecCCCccEEEEcCCCCCee
Q 035663           54 RPNLPPLLLRNLNENCVNRQSCTFFNPKTKK---FREIPLPEVKGRWVSCSSHGW-LLTVSCLDETQNMFLLHPFTRSQV  129 (297)
Q Consensus        54 ~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~s~~Gw-ll~~~~~~~~~~~~l~NP~T~~~i  129 (297)
                      .+..|.|+....      .+...+|.+....   ...+.+-..+.....+..+|- .++.  .....-++.+|..|++..
T Consensus       222 Hp~~plllvaG~------d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~--s~rrky~ysyDle~ak~~  293 (514)
T KOG2055|consen  222 HPTAPLLLVAGL------DGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFT--SGRRKYLYSYDLETAKVT  293 (514)
T ss_pred             cCCCceEEEecC------CCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEe--cccceEEEEeeccccccc
Confidence            345677665532      2567788887652   333333322233333344554 4442  344567899999999988


Q ss_pred             cCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCCCCeEEEEecCCCceEeec-cC-cccccCCcCeEEeCCccccC
Q 035663          130 KLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPGDRNWTSIV-HD-QYIRFTNTSAHFYDGRNCCK  207 (297)
Q Consensus       130 ~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~~~g~~~W~~~~-~~-~~~~~~~~d~v~~~~~~~~~  207 (297)
                      +|-++....+- ++  ...-++  |. +.|+++.  +..+.|.+...-.+.|..-- .. ...     +..+...    +
T Consensus       294 k~~~~~g~e~~-~~--e~FeVS--hd-~~fia~~--G~~G~I~lLhakT~eli~s~KieG~v~-----~~~fsSd----s  356 (514)
T KOG2055|consen  294 KLKPPYGVEEK-SM--ERFEVS--HD-SNFIAIA--GNNGHIHLLHAKTKELITSFKIEGVVS-----DFTFSSD----S  356 (514)
T ss_pred             cccCCCCcccc-hh--heeEec--CC-CCeEEEc--ccCceEEeehhhhhhhhheeeeccEEe-----eEEEecC----C
Confidence            77665432211 00  122333  22 3465543  23567777776666654311 11 222     4444421    1


Q ss_pred             CeEEEeccCCcEEEEecCCCC
Q 035663          208 GYFYCLGSCNFIFRIRFDHPH  228 (297)
Q Consensus       208 G~~Y~l~~~g~i~~~d~~~~~  228 (297)
                      .++|....+|.|+++|+..+.
T Consensus       357 k~l~~~~~~GeV~v~nl~~~~  377 (514)
T KOG2055|consen  357 KELLASGGTGEVYVWNLRQNS  377 (514)
T ss_pred             cEEEEEcCCceEEEEecCCcc
Confidence            457777778899999998764

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=83.76  E-value=34  Score=31.17  Aligned_cols=120  Identities=12%  Similarity=0.038  Sum_probs=66.0

Q ss_pred             eEEEEecCCCceEeeccC--cccccCCcCeEEeCCccccCCeEEEecc----CCcEEEEecCCCCCCceecCCC--CCCc
Q 035663          170 KLAFCRPGDRNWTSIVHD--QYIRFTNTSAHFYDGRNCCKGYFYCLGS----CNFIFRIRFDHPHAPTAEAMPF--KPHE  241 (297)
Q Consensus       170 ~l~~~~~g~~~W~~~~~~--~~~~~~~~d~v~~~~~~~~~G~~Y~l~~----~g~i~~~d~~~~~~~~~~~~p~--~~~~  241 (297)
                      .++++..-.+.|..+...  +..+... .||..+.+...=|-||=...    ...|++||++.=.|+. ..++.  |.+.
T Consensus       155 D~W~fd~~trkweql~~~g~PS~RSGH-RMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~K-lepsga~PtpR  232 (521)
T KOG1230|consen  155 DLWLFDLKTRKWEQLEFGGGPSPRSGH-RMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSK-LEPSGAGPTPR  232 (521)
T ss_pred             heeeeeeccchheeeccCCCCCCCccc-eeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeee-ccCCCCCCCCC
Confidence            455677778999998865  2211111 33333310000022332221    1379999999988875 22222  1111


Q ss_pred             cccCCceeEEeeeCCcEEEEEEEccCCCC-CCCCceeeEEEEEEECCC-----Cceeecc
Q 035663          242 YCCNARYNYLVELNSDLFIVSRFLIPHKS-YPCELTCAFIVCKLDLET-----EKWIMVN  295 (297)
Q Consensus       242 ~~~~~~~~~LVes~G~LllV~~~~~~~~~-~~~~~~~~~~V~~ld~~~-----~~W~~v~  295 (297)
                          ...++.|--.|.+++-+-|.+..-. .-+..++.-+.|.|+.+.     -.|.+|.
T Consensus       233 ----SGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvk  288 (521)
T KOG1230|consen  233 ----SGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVK  288 (521)
T ss_pred             ----CcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeecc
Confidence                1223444447999999888864211 112256778999998875     4688775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	297
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.96
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.83
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.73
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.72
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.71
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.71
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.69
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.65
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.64
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.63
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.57
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.55
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.43
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.38
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.21
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.2
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.97
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.74
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.47
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.34
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.21
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.76
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.7
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.67
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.4
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.18
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.95

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.96  E-value=3.7e-10  Score=71.01  Aligned_cols=44  Identities=36%  Similarity=0.605  Sum_probs=36.9

Q ss_pred             CCCCCCCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhhh
Q 035663            3 PQQLSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLY   50 (297)
Q Consensus         3 ~~~~~ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~   50 (297)
                      .+...|+.||+|++..|+.+| +..|+.+   ++.|||.|+.++.++.
T Consensus         4 ~~~~~~~~LP~eil~~I~~~L-~~~dl~~---~~~Vck~w~~~~~~~~   47 (53)
T 1fs1_A            4 FPGVSWDSLPDELLLGIFSCL-CLPELLK---VSGVCKRWYRLASDES   47 (53)
T ss_dssp             -----CCSSCHHHHHHHHTTS-CGGGHHH---HHTTCHHHHHHHTCGG
T ss_pred             CCCCCHHHCCHHHHHHHHHcC-CHHHHHH---HHHHHHHHHHHhCChH
Confidence            345789999999999999999 9999999   9999999999997654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.83  E-value=5.9e-07  Score=77.15  Aligned_cols=192  Identities=18%  Similarity=0.127  Sum_probs=121.5

Q ss_pred             CcceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecC--CCccEEEEcCCCCCeecCCCCCCCCCceeecCce
Q 035663           72 RQSCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLD--ETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLR  147 (297)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~--~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~  147 (297)
                      ......||+.+++|..+. +|. +.....+ ..+|.|++.-+.+  ....+..+||.|++|..+|+++.....     ..
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-----~~   96 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFE-KRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDS-----LA   96 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSC-CCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBS-----CE
T ss_pred             CceEEEecCCCCCEecCCCCCc-ccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccc-----ee
Confidence            356778999999999874 333 2222333 5577666632222  126789999999999998876643211     11


Q ss_pred             EEEecCCCCCCEEEEEEeC------CCCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEecc------
Q 035663          148 VITSTSPLDPDCLVLASLY------VSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGS------  215 (297)
Q Consensus       148 ~~ls~~p~~~~~~Vv~~~~------~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~------  215 (297)
                      ++. .    ++.+ .++.+      ....+..|++..++|+.+...+..+... .++.++      |++|++..      
T Consensus        97 ~~~-~----~~~i-yv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~GG~~~~~~  163 (306)
T 3ii7_A           97 ACA-A----EGKI-YTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVEAN------GLIYVCGGSLGNNV  163 (306)
T ss_dssp             EEE-E----TTEE-EEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEET------TEEEEECCEESCTT
T ss_pred             EEE-E----CCEE-EEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEEEC------CEEEEECCCCCCCC
Confidence            221 1    2222 22222      1246889999999999987652111111 456677      99999863      


Q ss_pred             ----CCcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCce
Q 035663          216 ----CNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKW  291 (297)
Q Consensus       216 ----~g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W  291 (297)
                          ...+.+||+..+.|.....+|.+       ......+..+|+|++++-....        ...-.|+.+|.++++|
T Consensus       164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~~~~i~v~GG~~~~--------~~~~~~~~yd~~~~~W  228 (306)
T 3ii7_A          164 SGRVLNSCEVYDPATETWTELCPMIEA-------RKNHGLVFVKDKIFAVGGQNGL--------GGLDNVEYYDIKLNEW  228 (306)
T ss_dssp             TCEECCCEEEEETTTTEEEEECCCSSC-------CBSCEEEEETTEEEEECCEETT--------EEBCCEEEEETTTTEE
T ss_pred             cccccceEEEeCCCCCeEEECCCccch-------hhcceEEEECCEEEEEeCCCCC--------CCCceEEEeeCCCCcE
Confidence                23589999999988752234431       1234556668999998776532        2334688899999999


Q ss_pred             eecccC
Q 035663          292 IMVNNI  297 (297)
Q Consensus       292 ~~v~~L  297 (297)
                      .++..+
T Consensus       229 ~~~~~~  234 (306)
T 3ii7_A          229 KMVSPM  234 (306)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            998653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.73  E-value=3.5e-06  Score=72.69  Aligned_cols=192  Identities=9%  Similarity=0.090  Sum_probs=120.3

Q ss_pred             cceEEEecCCCcEEecCCCCC-CCCceEE-eeCCeEEEEeec----CC-C----ccEEEEcCCCCCeecCCCCCCCCCce
Q 035663           73 QSCTFFNPKTKKFREIPLPEV-KGRWVSC-SSHGWLLTVSCL----DE-T----QNMFLLHPFTRSQVKLPPPPPGTQLQ  141 (297)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~p~~-~~~~~~~-s~~Gwll~~~~~----~~-~----~~~~l~NP~T~~~i~LP~~~~~~~~~  141 (297)
                      .....||+.+++|...++|.+ +.....+ ..+|-+++.-+.    +. .    ..++.+||.|++|..+|+++..... 
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-   91 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL-   91 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES-
T ss_pred             CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc-
Confidence            456789999999987666542 2222223 446655543222    11 1    3488999999999999887643211 


Q ss_pred             eecCceEEEecCCCCCCEEEEEEeC--------CCCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEe
Q 035663          142 FLNGLRVITSTSPLDPDCLVLASLY--------VSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCL  213 (297)
Q Consensus       142 ~~~~~~~~ls~~p~~~~~~Vv~~~~--------~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l  213 (297)
                          ..++. .    ++.+.+ +.+        ....+..|.+..++|+.+...+..+... .++.++      |++|++
T Consensus        92 ----~~~~~-~----~~~lyv-~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~  154 (315)
T 4asc_A           92 ----FGLGE-A----LNSIYV-VGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLSHM------DLVYVI  154 (315)
T ss_dssp             ----CEEEE-E----TTEEEE-ECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEET------TEEEEE
T ss_pred             ----eeEEE-E----CCEEEE-EeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEEEC------CEEEEE
Confidence                01221 1    222222 222        1246788999999999987651111111 456677      999998


Q ss_pred             ccC-------CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEEC
Q 035663          214 GSC-------NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDL  286 (297)
Q Consensus       214 ~~~-------g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~  286 (297)
                      ...       ..+.+||+..+.|....++|.+       ......+..+|+|++++-....        ...-.++.+|.
T Consensus       155 GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~yd~  219 (315)
T 4asc_A          155 GGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA-------RSLFGATVHDGRIIVAAGVTDT--------GLTSSAEVYSI  219 (315)
T ss_dssp             CCBCTTSCBCCCEEEEETTTTEEEECCCCSSC-------CBSCEEEEETTEEEEEEEECSS--------SEEEEEEEEET
T ss_pred             eCCCCCCcccceEEEEeCCCCeEEECCCCCCc-------hhceEEEEECCEEEEEeccCCC--------CccceEEEEEC
Confidence            642       3699999999988752234431       1233456668999999887642        23457888999


Q ss_pred             CCCceeecccC
Q 035663          287 ETEKWIMVNNI  297 (297)
Q Consensus       287 ~~~~W~~v~~L  297 (297)
                      ++++|.++..+
T Consensus       220 ~~~~W~~~~~~  230 (315)
T 4asc_A          220 TDNKWAPFEAF  230 (315)
T ss_dssp             TTTEEEEECCC
T ss_pred             CCCeEEECCCC
Confidence            99999998753

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.72  E-value=5e-06  Score=71.78  Aligned_cols=192  Identities=17%  Similarity=0.221  Sum_probs=118.3

Q ss_pred             ceEEEecCCCcEEecCCCCC-CCCceEE-eeCCeEEEEeecC--CC-------ccEEEEcCCCCCeecCCCCCCCCCcee
Q 035663           74 SCTFFNPKTKKFREIPLPEV-KGRWVSC-SSHGWLLTVSCLD--ET-------QNMFLLHPFTRSQVKLPPPPPGTQLQF  142 (297)
Q Consensus        74 ~~~~~~~~~~~~~~~~~p~~-~~~~~~~-s~~Gwll~~~~~~--~~-------~~~~l~NP~T~~~i~LP~~~~~~~~~~  142 (297)
                      ....||+.+++|...++|.+ +.....+ ..+|.|++.-+..  ..       ..++.+||.|++|..+|+.+.....  
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--  102 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL--  102 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS--
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc--
Confidence            46789999999987655432 2222333 4566555533211  11       2388999999999999887654211  


Q ss_pred             ecCceEEEecCCCCCCEEEEEEe-C--C---CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC
Q 035663          143 LNGLRVITSTSPLDPDCLVLASL-Y--V---SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC  216 (297)
Q Consensus       143 ~~~~~~~ls~~p~~~~~~Vv~~~-~--~---~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~  216 (297)
                         ..++. .    ++.+.+.-. .  .   ...+..|++..++|+.+...+..+... .++.++      |++|++...
T Consensus       103 ---~~~~~-~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~GG~  167 (318)
T 2woz_A          103 ---FGLGE-V----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVISHN------GMIYCLGGK  167 (318)
T ss_dssp             ---CEEEE-E----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEEET------TEEEEECCE
T ss_pred             ---cceEE-E----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEEEC------CEEEEEcCC
Confidence               11222 1    223322221 1  1   135678999999999987651111111 455577      999998631


Q ss_pred             -------CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCC
Q 035663          217 -------NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETE  289 (297)
Q Consensus       217 -------g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~  289 (297)
                             ..+.+||+..+.|....++|.+       ......+..+|+|++++-....        ...-.|+.+|.+++
T Consensus       168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~yd~~~~  232 (318)
T 2woz_A          168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTP-------RSMFGVAIHKGKIVIAGGVTED--------GLSASVEAFDLKTN  232 (318)
T ss_dssp             ESSSCBCCCEEEEETTTTEEEEECCCSSC-------CBSCEEEEETTEEEEEEEEETT--------EEEEEEEEEETTTC
T ss_pred             CCCCCccceEEEEcCCCCEEEECCCCCCC-------cccceEEEECCEEEEEcCcCCC--------CccceEEEEECCCC
Confidence                   2699999999988752234431       1223445678999999877642        34457888899999


Q ss_pred             ceeecccC
Q 035663          290 KWIMVNNI  297 (297)
Q Consensus       290 ~W~~v~~L  297 (297)
                      +|.++..+
T Consensus       233 ~W~~~~~~  240 (318)
T 2woz_A          233 KWEVMTEF  240 (318)
T ss_dssp             CEEECCCC
T ss_pred             eEEECCCC
Confidence            99998753

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.71  E-value=3e-06  Score=72.54  Aligned_cols=192  Identities=14%  Similarity=0.113  Sum_probs=118.6

Q ss_pred             cceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecCC---CccEEEEcCCCCCeecCCCCCCCCCceeecCce
Q 035663           73 QSCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLDE---TQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLR  147 (297)
Q Consensus        73 ~~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~~---~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~  147 (297)
                      .....||+.+++|..+. +|.. .....+ ..+|-+++.-+.+.   ...+..+||.|++|..+|+++.....     ..
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-----~~  103 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSR-RCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST-----LG  103 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSC-CBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-----CE
T ss_pred             CcEEEEcCcCCcEeEcccCCcc-cccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc-----eE
Confidence            45678999999998873 4432 222223 45776666322222   25799999999999999887644211     11


Q ss_pred             EEEecCCCCCCEEEEEEe-CC---CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEecc--------
Q 035663          148 VITSTSPLDPDCLVLASL-YV---SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGS--------  215 (297)
Q Consensus       148 ~~ls~~p~~~~~~Vv~~~-~~---~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~--------  215 (297)
                      ++. .    ++.+.+.-. ..   ...+..|++..++|+.+...+..+... .++.++      |++|++..        
T Consensus       104 ~~~-~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~GG~~~~~~~~  171 (302)
T 2xn4_A          104 AAV-L----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGVVG------GLLYAVGGYDVASRQC  171 (302)
T ss_dssp             EEE-E----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEEET------TEEEEECCEETTTTEE
T ss_pred             EEE-E----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEEEC------CEEEEEeCCCCCCCcc
Confidence            222 1    223322211 11   135678999999999987652111111 456677      99999853        


Q ss_pred             CCcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeecc
Q 035663          216 CNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVN  295 (297)
Q Consensus       216 ~g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~  295 (297)
                      ...+..||+..+.|.....+|.+       ......+..+|+|++++-....        ...-.|+.+|.++++|.++.
T Consensus       172 ~~~~~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~yd~~~~~W~~~~  236 (302)
T 2xn4_A          172 LSTVECYNATTNEWTYIAEMSTR-------RSGAGVGVLNNLLYAVGGHDGP--------LVRKSVEVYDPTTNAWRQVA  236 (302)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSC-------CBSCEEEEETTEEEEECCBSSS--------SBCCCEEEEETTTTEEEEEC
T ss_pred             ccEEEEEeCCCCcEEECCCCccc-------cccccEEEECCEEEEECCCCCC--------cccceEEEEeCCCCCEeeCC
Confidence            23699999999988753234431       1223456668999998765431        22335888899999999987


Q ss_pred             cC
Q 035663          296 NI  297 (297)
Q Consensus       296 ~L  297 (297)
                      .+
T Consensus       237 ~~  238 (302)
T 2xn4_A          237 DM  238 (302)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.71  E-value=2.9e-06  Score=72.53  Aligned_cols=191  Identities=19%  Similarity=0.250  Sum_probs=119.5

Q ss_pred             cceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecCC---CccEEEEcCCCCC---eecCCCCCCCCCceeec
Q 035663           73 QSCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLDE---TQNMFLLHPFTRS---QVKLPPPPPGTQLQFLN  144 (297)
Q Consensus        73 ~~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~~---~~~~~l~NP~T~~---~i~LP~~~~~~~~~~~~  144 (297)
                      .....||+.+++|..++ +|. +...... ..+|-+++.-+.+.   ...++.+||.|++   |..+|+++.....    
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~----  105 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITR-KRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL----  105 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSS-CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS----
T ss_pred             eEEEEEcCCCCeEEeCCCCCh-hhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc----
Confidence            45678999999998875 343 2222233 55676666322221   2579999999999   9999887644221    


Q ss_pred             CceEEEecCCCCCCEEEEEEeC-----CCCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEecc----
Q 035663          145 GLRVITSTSPLDPDCLVLASLY-----VSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGS----  215 (297)
Q Consensus       145 ~~~~~ls~~p~~~~~~Vv~~~~-----~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~----  215 (297)
                       ..++. .    ++.+ .++.+     ....+..|++..++|+.++..+..+... ..+.++      |++|++..    
T Consensus       106 -~~~~~-~----~~~l-yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~GG~~~~  171 (301)
T 2vpj_A          106 -AGATT-L----GDMI-YVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGA-GLVVAS------GVIYCLGGYDGL  171 (301)
T ss_dssp             -CEEEE-E----TTEE-EEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC-EEEEET------TEEEEECCBCSS
T ss_pred             -eeEEE-E----CCEE-EEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccc-eEEEEC------CEEEEECCCCCC
Confidence             11222 1    2222 22222     1346889999999999987652111111 455667      99999863    


Q ss_pred             --CCcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceee
Q 035663          216 --CNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIM  293 (297)
Q Consensus       216 --~g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~  293 (297)
                        ...+.+||+..+.|.....+|.+       ......+..+|+|++++-....        ...-.|+.+|.++++|.+
T Consensus       172 ~~~~~~~~~d~~~~~W~~~~~~p~~-------r~~~~~~~~~~~i~v~GG~~~~--------~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          172 NILNSVEKYDPHTGHWTNVTPMATK-------RSGAGVALLNDHIYVVGGFDGT--------AHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             CBCCCEEEEETTTTEEEEECCCSSC-------CBSCEEEEETTEEEEECCBCSS--------SBCCCEEEEETTTTEEEE
T ss_pred             cccceEEEEeCCCCcEEeCCCCCcc-------cccceEEEECCEEEEEeCCCCC--------cccceEEEEeCCCCcEEE
Confidence              23799999999988752234431       1234456668999988765432        223468888999999999


Q ss_pred             cccC
Q 035663          294 VNNI  297 (297)
Q Consensus       294 v~~L  297 (297)
                      +..+
T Consensus       237 ~~~~  240 (301)
T 2vpj_A          237 VTSM  240 (301)
T ss_dssp             ECCC
T ss_pred             CCCC
Confidence            8653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.69  E-value=2.7e-06  Score=73.15  Aligned_cols=191  Identities=14%  Similarity=0.127  Sum_probs=119.1

Q ss_pred             cceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecCC---CccEEEEcCCCCCeecCCCCCCCCCceeecCce
Q 035663           73 QSCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLDE---TQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLR  147 (297)
Q Consensus        73 ~~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~~---~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~  147 (297)
                      .....||+.+++|..++ +|. +...... ..+|-+++.-+.+.   ...+..+||-|.+|..+++++.....     ..
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-----~~  163 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSV-PRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-----VG  163 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSS-CCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-----CE
T ss_pred             ceEEEECCCCCeEeECCCCCc-CccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc-----eE
Confidence            35677999999998874 333 2222233 55776666322221   25789999999999999876643211     11


Q ss_pred             EEEecCCCCCCEEEEEEeCC-----CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC------
Q 035663          148 VITSTSPLDPDCLVLASLYV-----SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC------  216 (297)
Q Consensus       148 ~~ls~~p~~~~~~Vv~~~~~-----~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~------  216 (297)
                      ++. .    ++.+. ++.+.     ...+..|++..++|+.+...+..+... .++.++      |++|++...      
T Consensus       164 ~~~-~----~~~iy-v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~GG~~~~~~~  230 (308)
T 1zgk_A          164 VAV-L----NRLLY-AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA-GVCVLH------NCIYAAGGYDGQDQL  230 (308)
T ss_dssp             EEE-E----TTEEE-EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEET------TEEEEECCBCSSSBC
T ss_pred             EEE-E----CCEEE-EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccc-eEEEEC------CEEEEEeCCCCCCcc
Confidence            222 1    22222 22221     356889999999999987652111111 456667      999998732      


Q ss_pred             CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeeccc
Q 035663          217 NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN  296 (297)
Q Consensus       217 g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~  296 (297)
                      ..+.+||+..+.|.....+|.+       ......+..+|+|++++-....        ...-.|+.+|.++++|.++.+
T Consensus       231 ~~v~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~~~~i~v~GG~~~~--------~~~~~v~~yd~~~~~W~~~~~  295 (308)
T 1zgk_A          231 NSVERYDVETETWTFVAPMKHR-------RSALGITVHQGRIYVLGGYDGH--------TFLDSVECYDPDTDTWSEVTR  295 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSC-------CBSCEEEEETTEEEEECCBCSS--------CBCCEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEeCCCCcEEECCCCCCC-------ccceEEEEECCEEEEEcCcCCC--------cccceEEEEcCCCCEEeecCC
Confidence            3699999999988752233331       1223455568999988765431        233478889999999998865


Q ss_pred             C
Q 035663          297 I  297 (297)
Q Consensus       297 L  297 (297)
                      +
T Consensus       296 ~  296 (308)
T 1zgk_A          296 M  296 (308)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.65  E-value=2.9e-06  Score=72.74  Aligned_cols=190  Identities=12%  Similarity=0.109  Sum_probs=118.9

Q ss_pred             cceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecC-C---CccEEEEcCCCCCeecCCCCCCCCCceeecCc
Q 035663           73 QSCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLD-E---TQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGL  146 (297)
Q Consensus        73 ~~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~-~---~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~  146 (297)
                      .....||+.+++|..+. +|. +...... ..+|-+++.-+.+ .   ...+..+||.|.+|..+|+++.....     .
T Consensus        70 ~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-----~  143 (306)
T 3ii7_A           70 KRMDCYNVVKDSWYSKLGPPT-PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCS-----H  143 (306)
T ss_dssp             CEEEEEETTTTEEEEEECCSS-CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBS-----C
T ss_pred             ceEEEEeCCCCeEEECCCCCc-cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcce-----e
Confidence            45667999999998763 443 2222233 5577666633222 1   25799999999999999887644211     1


Q ss_pred             eEEEecCCCCCCEEEEEEeC-----C----CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEecc--
Q 035663          147 RVITSTSPLDPDCLVLASLY-----V----SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGS--  215 (297)
Q Consensus       147 ~~~ls~~p~~~~~~Vv~~~~-----~----~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~--  215 (297)
                      .++. .    ++.+ .++.+     .    ...+..|++..++|+.++.....+.. -.++.++      |++|++..  
T Consensus       144 ~~~~-~----~~~i-yv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~------~~i~v~GG~~  210 (306)
T 3ii7_A          144 GMVE-A----NGLI-YVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN-HGLVFVK------DKIFAVGGQN  210 (306)
T ss_dssp             EEEE-E----TTEE-EEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS-CEEEEET------TEEEEECCEE
T ss_pred             EEEE-E----CCEE-EEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc-ceEEEEC------CEEEEEeCCC
Confidence            1221 1    2222 22221     1    35678999999999999865211111 1556667      99999853  


Q ss_pred             ----CCcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCce
Q 035663          216 ----CNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKW  291 (297)
Q Consensus       216 ----~g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W  291 (297)
                          ...+.+||+..+.|.....+|.+       ......+..+|+|++++-....        ...-.|+.+|.++++|
T Consensus       211 ~~~~~~~~~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~~~~i~v~GG~~~~--------~~~~~~~~yd~~~~~W  275 (306)
T 3ii7_A          211 GLGGLDNVEYYDIKLNEWKMVSPMPWK-------GVTVKCAAVGSIVYVLAGFQGV--------GRLGHILEYNTETDKW  275 (306)
T ss_dssp             TTEEBCCEEEEETTTTEEEECCCCSCC-------BSCCEEEEETTEEEEEECBCSS--------SBCCEEEEEETTTTEE
T ss_pred             CCCCCceEEEeeCCCCcEEECCCCCCC-------ccceeEEEECCEEEEEeCcCCC--------eeeeeEEEEcCCCCeE
Confidence                13799999999988752233431       1223455568999998876532        2233789999999999


Q ss_pred             eeccc
Q 035663          292 IMVNN  296 (297)
Q Consensus       292 ~~v~~  296 (297)
                      .++..
T Consensus       276 ~~~~~  280 (306)
T 3ii7_A          276 VANSK  280 (306)
T ss_dssp             EEEEE
T ss_pred             EeCCC
Confidence            98764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.64  E-value=3.4e-06  Score=72.53  Aligned_cols=191  Identities=15%  Similarity=0.120  Sum_probs=118.2

Q ss_pred             cceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeec----CC---CccEEEEcCCCCCeecCCCCCCCCCceee
Q 035663           73 QSCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCL----DE---TQNMFLLHPFTRSQVKLPPPPPGTQLQFL  143 (297)
Q Consensus        73 ~~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~----~~---~~~~~l~NP~T~~~i~LP~~~~~~~~~~~  143 (297)
                      .....||+.+++|..+. +|. +...... ..+|.|++.-+.    +.   ...++.+||.|++|..+|+++.....   
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~---  114 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQV-PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR---  114 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSS-CCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT---
T ss_pred             ceEEEEcCCCCeEeECCCCCc-ccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccc---
Confidence            45778999999999874 333 2222223 456666653222    11   25789999999999999887644211   


Q ss_pred             cCceEEEecCCCCCCEEEEEEeC-----CCCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEecc---
Q 035663          144 NGLRVITSTSPLDPDCLVLASLY-----VSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGS---  215 (297)
Q Consensus       144 ~~~~~~ls~~p~~~~~~Vv~~~~-----~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~---  215 (297)
                        ..++. .    ++.+ .++.+     ....+..|.+..++|+.+...+..+... ..+.++      |++|++..   
T Consensus       115 --~~~~~-~----~~~i-yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~GG~~~  179 (308)
T 1zgk_A          115 --IGVGV-I----DGHI-YAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVLN------RLLYAVGGFDG  179 (308)
T ss_dssp             --CEEEE-E----TTEE-EEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEET------TEEEEECCBCS
T ss_pred             --cEEEE-E----CCEE-EEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEEEEC------CEEEEEeCCCC
Confidence              11222 1    2222 22222     1346789999999999987651111111 455667      99999863   


Q ss_pred             ---CCcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCcee
Q 035663          216 ---CNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWI  292 (297)
Q Consensus       216 ---~g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~  292 (297)
                         ...+..||+..+.|.....+|.+       ......+..+|+|++++-....        ...-.|+.+|.++++|.
T Consensus       180 ~~~~~~~~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~~~~iyv~GG~~~~--------~~~~~v~~yd~~~~~W~  244 (308)
T 1zgk_A          180 TNRLNSAECYYPERNEWRMITAMNTI-------RSGAGVCVLHNCIYAAGGYDGQ--------DQLNSVERYDVETETWT  244 (308)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSC-------CBSCEEEEETTEEEEECCBCSS--------SBCCCEEEEETTTTEEE
T ss_pred             CCcCceEEEEeCCCCeEeeCCCCCCc-------cccceEEEECCEEEEEeCCCCC--------CccceEEEEeCCCCcEE
Confidence               23699999999988752233331       1223445568999988765432        23456888999999999


Q ss_pred             ecccC
Q 035663          293 MVNNI  297 (297)
Q Consensus       293 ~v~~L  297 (297)
                      ++..+
T Consensus       245 ~~~~~  249 (308)
T 1zgk_A          245 FVAPM  249 (308)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            98753

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.63  E-value=5.6e-06  Score=70.84  Aligned_cols=189  Identities=14%  Similarity=0.146  Sum_probs=117.9

Q ss_pred             cceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecCCC---ccEEEEcCCCCCeecCCCCCCCCCceeecCce
Q 035663           73 QSCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLDET---QNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLR  147 (297)
Q Consensus        73 ~~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~~~---~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~  147 (297)
                      .....||+.+++|..++ +|. +...... ..+|.+++.-+.+..   ..+..+||-|.+|..+|+++.....     ..
T Consensus        77 ~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-----~~  150 (302)
T 2xn4_A           77 RTVDSYDPVKDQWTSVANMRD-RRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-----VG  150 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-----CE
T ss_pred             cceEEECCCCCceeeCCCCCc-cccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-----ce
Confidence            45678999999998874 333 2222223 457766663333322   5789999999999999877644211     11


Q ss_pred             EEEecCCCCCCEEEEEEeC--C-----CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC----
Q 035663          148 VITSTSPLDPDCLVLASLY--V-----SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC----  216 (297)
Q Consensus       148 ~~ls~~p~~~~~~Vv~~~~--~-----~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~----  216 (297)
                      ++. .    ++.+ .++.+  .     ...+..|++..++|+.+...+..+... .++.++      |++|++...    
T Consensus       151 ~~~-~----~~~i-yv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~GG~~~~~  217 (302)
T 2xn4_A          151 VGV-V----GGLL-YAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGVLN------NLLYAVGGHDGPL  217 (302)
T ss_dssp             EEE-E----TTEE-EEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEEET------TEEEEECCBSSSS
T ss_pred             EEE-E----CCEE-EEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccc-cEEEEC------CEEEEECCCCCCc
Confidence            222 1    2222 22221  1     346789999999999987652111111 556677      999999641    


Q ss_pred             --CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeec
Q 035663          217 --NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMV  294 (297)
Q Consensus       217 --g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v  294 (297)
                        ..+..||+..+.|.....+|.+       ......+..+|+|++++-....        ...-.|+.+|.++++|.++
T Consensus       218 ~~~~~~~yd~~~~~W~~~~~~~~~-------r~~~~~~~~~~~i~v~GG~~~~--------~~~~~v~~yd~~~~~W~~~  282 (302)
T 2xn4_A          218 VRKSVEVYDPTTNAWRQVADMNMC-------RRNAGVCAVNGLLYVVGGDDGS--------CNLASVEYYNPTTDKWTVV  282 (302)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSC-------CBSCEEEEETTEEEEECCBCSS--------SBCCCEEEEETTTTEEEEC
T ss_pred             ccceEEEEeCCCCCEeeCCCCCCc-------cccCeEEEECCEEEEECCcCCC--------cccccEEEEcCCCCeEEEC
Confidence              3799999999988752233331       1223456668999988765432        2234688889999999988


Q ss_pred             c
Q 035663          295 N  295 (297)
Q Consensus       295 ~  295 (297)
                      .
T Consensus       283 ~  283 (302)
T 2xn4_A          283 S  283 (302)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.57  E-value=8.2e-06  Score=69.69  Aligned_cols=190  Identities=10%  Similarity=0.107  Sum_probs=117.9

Q ss_pred             cceEEEecCCCc---EEecC-CCCCCCCceEE-eeCCeEEEEeecCC---CccEEEEcCCCCCeecCCCCCCCCCceeec
Q 035663           73 QSCTFFNPKTKK---FREIP-LPEVKGRWVSC-SSHGWLLTVSCLDE---TQNMFLLHPFTRSQVKLPPPPPGTQLQFLN  144 (297)
Q Consensus        73 ~~~~~~~~~~~~---~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~~---~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~  144 (297)
                      .....||+.+++   |..+. +|. +.....+ ..+|.+++.-+.+.   ...+..+||.|.+|..+|+.+.....    
T Consensus        78 ~~~~~~d~~~~~~~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~----  152 (301)
T 2vpj_A           78 SSVECLDYTADEDGVWYSVAPMNV-RRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG----  152 (301)
T ss_dssp             CCEEEEETTCCTTCCCEEECCCSS-CCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS----
T ss_pred             ceEEEEECCCCCCCeeEECCCCCC-CccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc----
Confidence            456789999988   88773 343 2222333 55777666332222   25799999999999988776543211    


Q ss_pred             CceEEEecCCCCCCEEEEEEeC-----CCCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC---
Q 035663          145 GLRVITSTSPLDPDCLVLASLY-----VSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC---  216 (297)
Q Consensus       145 ~~~~~ls~~p~~~~~~Vv~~~~-----~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~---  216 (297)
                       ..++. .    ++.+ .++.+     ....+..|++..++|+.+...+..+. .-.++.++      |++|++...   
T Consensus       153 -~~~~~-~----~~~i-yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~~~------~~i~v~GG~~~~  218 (301)
T 2vpj_A          153 -AGLVV-A----SGVI-YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRS-GAGVALLN------DHIYVVGGFDGT  218 (301)
T ss_dssp             -CEEEE-E----TTEE-EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEET------TEEEEECCBCSS
T ss_pred             -ceEEE-E----CCEE-EEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccc-cceEEEEC------CEEEEEeCCCCC
Confidence             11222 1    2222 22222     13568899999999999876521111 11556677      999998642   


Q ss_pred             ---CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceee
Q 035663          217 ---NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIM  293 (297)
Q Consensus       217 ---g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~  293 (297)
                         ..+..||+..+.|.....+|.+.       .....+..+|+|++++-...        ....-.|+.+|.++++|.+
T Consensus       219 ~~~~~v~~yd~~~~~W~~~~~~p~~r-------~~~~~~~~~~~i~v~GG~~~--------~~~~~~v~~yd~~~~~W~~  283 (301)
T 2vpj_A          219 AHLSSVEAYNIRTDSWTTVTSMTTPR-------CYVGATVLRGRLYAIAGYDG--------NSLLSSIECYDPIIDSWEV  283 (301)
T ss_dssp             SBCCCEEEEETTTTEEEEECCCSSCC-------BSCEEEEETTEEEEECCBCS--------SSBEEEEEEEETTTTEEEE
T ss_pred             cccceEEEEeCCCCcEEECCCCCCcc-------cceeEEEECCEEEEEcCcCC--------CcccccEEEEcCCCCeEEE
Confidence               36999999999887522334311       12334556899888876442        1344578999999999998


Q ss_pred             ccc
Q 035663          294 VNN  296 (297)
Q Consensus       294 v~~  296 (297)
                      +.+
T Consensus       284 ~~~  286 (301)
T 2vpj_A          284 VTS  286 (301)
T ss_dssp             EEE
T ss_pred             cCC
Confidence            865

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.55  E-value=1.8e-05  Score=68.17  Aligned_cols=194  Identities=16%  Similarity=0.119  Sum_probs=117.9

Q ss_pred             eEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecC----C--CccEEEEcCCCCCeecCCCCCCCCCceeecCc
Q 035663           75 CTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLD----E--TQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGL  146 (297)
Q Consensus        75 ~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~----~--~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~  146 (297)
                      ...||+.+++|..+. +|. +...... ..+|-+++.-+.+    .  ...+..+||.|++|..+++++.....     .
T Consensus        69 ~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-----~  142 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPS-PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-----H  142 (315)
T ss_dssp             EEEEETTTTEEEECCCBSS-CEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-----C
T ss_pred             eEEecCCCCeEEECCCCCc-chhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-----e
Confidence            567999999998763 332 1212222 4567666533221    1  25799999999999999886644211     1


Q ss_pred             eEEEecCCCCCCEEEEEEeCC------CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC----
Q 035663          147 RVITSTSPLDPDCLVLASLYV------SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC----  216 (297)
Q Consensus       147 ~~~ls~~p~~~~~~Vv~~~~~------~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~----  216 (297)
                      .++. .    ++. +.++.+.      ...+..|++..++|+.++..+..+... .++.++      |++|++...    
T Consensus       143 ~~~~-~----~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~GG~~~~~  209 (315)
T 4asc_A          143 TVLS-H----MDL-VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLF-GATVHD------GRIIVAAGVTDTG  209 (315)
T ss_dssp             EEEE-E----TTE-EEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEET------TEEEEEEEECSSS
T ss_pred             eEEE-E----CCE-EEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhce-EEEEEC------CEEEEEeccCCCC
Confidence            1222 1    222 2222221      246889999999999988652111111 456667      999998641    


Q ss_pred             --CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCC-CceeeEEEEEEECCCCceee
Q 035663          217 --NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPC-ELTCAFIVCKLDLETEKWIM  293 (297)
Q Consensus       217 --g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~-~~~~~~~V~~ld~~~~~W~~  293 (297)
                        ..+.+||+..+.|.....+|.+       ......+..+|+|++++-.......... .....-.||.+|.++++|.+
T Consensus       210 ~~~~~~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  282 (315)
T 4asc_A          210 LTSSAEVYSITDNKWAPFEAFPQE-------RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEG  282 (315)
T ss_dssp             EEEEEEEEETTTTEEEEECCCSSC-------CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEE
T ss_pred             ccceEEEEECCCCeEEECCCCCCc-------ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhh
Confidence              2689999999988753234431       1234566778999999877532000000 01334679999999999998


Q ss_pred             c
Q 035663          294 V  294 (297)
Q Consensus       294 v  294 (297)
                      +
T Consensus       283 ~  283 (315)
T 4asc_A          283 V  283 (315)
T ss_dssp             E
T ss_pred             h
Confidence            7

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.43  E-value=1.3e-07  Score=80.44  Aligned_cols=42  Identities=24%  Similarity=0.557  Sum_probs=39.1

Q ss_pred             CCCCCCCcHHHHHHHHhhcCCchhhh-ccccccccChhHHHhhhhhh
Q 035663            5 QLSWSSLPDELLSVIIQKLIDSDDIL-NCAVCAAVCSSWQSVVKDLY   50 (297)
Q Consensus         5 ~~~ws~LP~dll~~I~~rL~~~~d~~-r~~~~~~VCk~Wr~~~~~~~   50 (297)
                      ......||+|||.+||.+| |..+++ |   +++|||.||+++.++.
T Consensus        48 ~~~~~~LP~ell~~Il~~L-p~~~L~~r---~~~VCk~Wr~l~~~~~   90 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAEL-PATELVQA---CRLVCLRWKELVDGAP   90 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTS-CHHHHHHT---GGGTCHHHHHHHTSHH
T ss_pred             ccChhhCCHHHHHHHHHcC-CHHHHHHH---HHHHhHHHHHHhcChH
Confidence            4567899999999999999 999999 9   9999999999999876

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.38  E-value=2.5e-05  Score=67.38  Aligned_cols=194  Identities=12%  Similarity=0.147  Sum_probs=116.5

Q ss_pred             eEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecC--CC---ccEEEEcCCCCCeecCCCCCCCCCceeecCce
Q 035663           75 CTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLD--ET---QNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLR  147 (297)
Q Consensus        75 ~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~--~~---~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~  147 (297)
                      ...||+.+++|..+. +|.. ...... ..+|.+++.-+.+  ..   ..+..+||-|.+|..+++++.....     ..
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-----~~  153 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSA-RCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-----HN  153 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSC-BCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-----CE
T ss_pred             EEEEeCCCCcEEECCCCCcc-ccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-----cE
Confidence            567999999998773 3432 222223 5577666643332  11   5789999999999998876543210     11


Q ss_pred             EEEecCCCCCCEEEEEEeC------CCCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC-----
Q 035663          148 VITSTSPLDPDCLVLASLY------VSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC-----  216 (297)
Q Consensus       148 ~~ls~~p~~~~~~Vv~~~~------~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~-----  216 (297)
                      ++. .    ++.+ .++.+      ....+..|++..++|+.++.....+... .++.++      |++|++...     
T Consensus       154 ~~~-~----~~~i-yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~GG~~~~~~  220 (318)
T 2woz_A          154 VIS-H----NGMI-YCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMF-GVAIHK------GKIVIAGGVTEDGL  220 (318)
T ss_dssp             EEE-E----TTEE-EEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEET------TEEEEEEEEETTEE
T ss_pred             EEE-E----CCEE-EEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccc-eEEEEC------CEEEEEcCcCCCCc
Confidence            222 1    2222 22222      1346889999999999987652111111 456677      999998631     


Q ss_pred             -CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCC-CCceeeEEEEEEECCCCceeec
Q 035663          217 -NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYP-CELTCAFIVCKLDLETEKWIMV  294 (297)
Q Consensus       217 -g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~-~~~~~~~~V~~ld~~~~~W~~v  294 (297)
                       ..+.+||+..+.|.....+|.+       .....++..+|+|++++-......... ......-.||.+|.++++|.++
T Consensus       221 ~~~~~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          221 SASVEAFDLKTNKWEVMTEFPQE-------RSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             EEEEEEEETTTCCEEECCCCSSC-------CBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             cceEEEEECCCCeEEECCCCCCc-------ccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence             3688999999998752234431       123456677899998876543210000 0012345789999999999986

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.21  E-value=0.00026  Score=61.79  Aligned_cols=203  Identities=12%  Similarity=0.101  Sum_probs=112.5

Q ss_pred             cceEEEecCC--CcEEecC-CCCCCCCceEE-eeCCeEEEEeec-C---C----CccEEEEcCCCCCeecCCCCC-CCCC
Q 035663           73 QSCTFFNPKT--KKFREIP-LPEVKGRWVSC-SSHGWLLTVSCL-D---E----TQNMFLLHPFTRSQVKLPPPP-PGTQ  139 (297)
Q Consensus        73 ~~~~~~~~~~--~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~-~---~----~~~~~l~NP~T~~~i~LP~~~-~~~~  139 (297)
                      .....||+..  ++|..+. +|..+.....+ ..+|-|++.-+. +   .    ...+..+||.|.+|..+++.. ....
T Consensus        31 ~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~  110 (357)
T 2uvk_A           31 TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMA  110 (357)
T ss_dssp             TCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCS
T ss_pred             CeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccc
Confidence            3567899974  7888763 45212222233 456766553222 1   1    257999999999999998765 2221


Q ss_pred             ceeecCceEEEecCCCCCCEEEEEEeCC---------------------------------------CCeEEEEecCCCc
Q 035663          140 LQFLNGLRVITSTSPLDPDCLVLASLYV---------------------------------------SSKLAFCRPGDRN  180 (297)
Q Consensus       140 ~~~~~~~~~~ls~~p~~~~~~Vv~~~~~---------------------------------------~~~l~~~~~g~~~  180 (297)
                      .     ..++. .    ++.+.+ +.+.                                       ...+..|.+..++
T Consensus       111 ~-----~~~~~-~----~~~iyv-~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~  179 (357)
T 2uvk_A          111 G-----HVTFV-H----NGKAYV-TGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQ  179 (357)
T ss_dssp             S-----EEEEE-E----TTEEEE-EECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTE
T ss_pred             c-----ceEEE-E----CCEEEE-EeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCc
Confidence            0     11122 1    233322 2221                                       2578899999999


Q ss_pred             eEeeccCcccccCCcCeEEeCCccccCCeEEEecc-------CCcEEEEec--CCCCCCceecCCCCCCccccCCceeEE
Q 035663          181 WTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGS-------CNFIFRIRF--DHPHAPTAEAMPFKPHEYCCNARYNYL  251 (297)
Q Consensus       181 W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~-------~g~i~~~d~--~~~~~~~~~~~p~~~~~~~~~~~~~~L  251 (297)
                      |+.+...+..+.....++..+      |++|++.-       ...++.||+  ....|.....+|.+.     .......
T Consensus       180 W~~~~~~p~~~~~~~~~~~~~------~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~-----~~~~~~~  248 (357)
T 2uvk_A          180 WSYAGESPWYGTAGAAVVNKG------DKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD-----GVAGGFA  248 (357)
T ss_dssp             EEEEEECSSCCCBSCEEEEET------TEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTT-----CCBSCEE
T ss_pred             EEECCCCCCCCcccccEEEEC------CEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCc-----ccccceE
Confidence            999876421111111566677      99999853       236888887  556676422233211     1123346


Q ss_pred             eeeCCcEEEEEEEccCCC-------C-C-CCCceeeEEEEEEECCCCceeecccC
Q 035663          252 VELNSDLFIVSRFLIPHK-------S-Y-PCELTCAFIVCKLDLETEKWIMVNNI  297 (297)
Q Consensus       252 Ves~G~LllV~~~~~~~~-------~-~-~~~~~~~~~V~~ld~~~~~W~~v~~L  297 (297)
                      +..+|+|++++-......       . + .........++.+|.++++|.++..+
T Consensus       249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~  303 (357)
T 2uvk_A          249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL  303 (357)
T ss_dssp             EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC
T ss_pred             EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC
Confidence            778899999986643200       0 0 00012235677888889999988653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.20  E-value=0.00024  Score=62.05  Aligned_cols=194  Identities=10%  Similarity=0.020  Sum_probs=110.5

Q ss_pred             cceEEEecCCCcEEecCC-CCCCCCceEE-eeCCeEEEEeecCC------------------------------------
Q 035663           73 QSCTFFNPKTKKFREIPL-PEVKGRWVSC-SSHGWLLTVSCLDE------------------------------------  114 (297)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~-p~~~~~~~~~-s~~Gwll~~~~~~~------------------------------------  114 (297)
                      .....||+.+++|..+.. +..+.....+ ..+|-+++.-+.+.                                    
T Consensus        86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (357)
T 2uvk_A           86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYF  165 (357)
T ss_dssp             CCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGC
T ss_pred             ccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccC
Confidence            356789999999988743 2112223333 56776655332221                                    


Q ss_pred             -CccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeC------CCCeEEEEec--CCCceEeec
Q 035663          115 -TQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLY------VSSKLAFCRP--GDRNWTSIV  185 (297)
Q Consensus       115 -~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~------~~~~l~~~~~--g~~~W~~~~  185 (297)
                       ...+..+||-|.+|..+++.+......    ..++..     ++.+.+ +.+      ....+..|..  ..+.|+.+.
T Consensus       166 ~~~~v~~yd~~~~~W~~~~~~p~~~~~~----~~~~~~-----~~~iyv-~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~  235 (357)
T 2uvk_A          166 FNKFLLSFDPSTQQWSYAGESPWYGTAG----AAVVNK-----GDKTWL-INGEAKPGLRTDAVFELDFTGNNLKWNKLA  235 (357)
T ss_dssp             CCCEEEEEETTTTEEEEEEECSSCCCBS----CEEEEE-----TTEEEE-ECCEEETTEECCCEEEEECC---CEEEECC
T ss_pred             CcccEEEEeCCCCcEEECCCCCCCCccc----ccEEEE-----CCEEEE-EeeecCCCcccCceEEEEecCCCCcEEecC
Confidence             257899999999998876655321110    011211     222222 221      1345666765  788999987


Q ss_pred             cCcccc-cCCcCeEEeCCccccCCeEEEeccC-----------------------CcEEEEecCCCCCCceecCCCCCCc
Q 035663          186 HDQYIR-FTNTSAHFYDGRNCCKGYFYCLGSC-----------------------NFIFRIRFDHPHAPTAEAMPFKPHE  241 (297)
Q Consensus       186 ~~~~~~-~~~~d~v~~~~~~~~~G~~Y~l~~~-----------------------g~i~~~d~~~~~~~~~~~~p~~~~~  241 (297)
                      .....+ .....++..+      |++|++.-.                       ..+.+||+....|...-.+|.+.  
T Consensus       236 ~~~~~~~~~~~~~~~~~------~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--  307 (357)
T 2uvk_A          236 PVSSPDGVAGGFAGISN------DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGR--  307 (357)
T ss_dssp             CSSTTTCCBSCEEEEET------TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCC--
T ss_pred             CCCCCcccccceEEEEC------CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCc--
Confidence            651110 0011366677      999998641                       15789999999998633444421  


Q ss_pred             cccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeeccc
Q 035663          242 YCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN  296 (297)
Q Consensus       242 ~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~  296 (297)
                           .....+..+|+|++++-....       ....-.|+.++.++++|.+...
T Consensus       308 -----~~~~~~~~~~~i~v~GG~~~~-------~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          308 -----AYGVSLPWNNSLLIIGGETAG-------GKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             -----BSSEEEEETTEEEEEEEECGG-------GCEEEEEEEEEC-CCSCEEEC-
T ss_pred             -----ccceeEEeCCEEEEEeeeCCC-------CCEeeeEEEEEEcCcEeEeeec
Confidence                 113346678999999988753       2345688889999999988653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.97  E-value=0.0015  Score=58.69  Aligned_cols=37  Identities=30%  Similarity=0.556  Sum_probs=35.0

Q ss_pred             CCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhh
Q 035663            8 WSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKD   48 (297)
Q Consensus         8 ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~   48 (297)
                      ++.||+|++..|+..| +..|+.+   ++.|||.|+.++.+
T Consensus        15 ~~~lp~~~~~~i~~~l-~~~~l~~---~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           15 ITSLPFEISLKIFNYL-QFEDIIN---SLGVSQNWNKIIRK   51 (464)
T ss_dssp             HHHSCHHHHHHHHTTS-CHHHHHH---HHTTCHHHHHHHTT
T ss_pred             hHHCCHHHHHHHHhcC-CHHHHHH---HHHHHHHHHHHHcC
Confidence            6679999999999999 9999999   99999999999876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.74  E-value=1.3e-05  Score=69.52  Aligned_cols=44  Identities=36%  Similarity=0.605  Sum_probs=38.0

Q ss_pred             CCCCCCCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhhh
Q 035663            3 PQQLSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLY   50 (297)
Q Consensus         3 ~~~~~ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~   50 (297)
                      ...+.|++||+|++..|+.+| +..|+.+   ++.|||.|+.++.++.
T Consensus         4 ~~~~~~~~LP~eil~~If~~L-~~~d~~~---~~~vc~~W~~~~~~~~   47 (336)
T 2ast_B            4 FPGVSWDSLPDELLLGIFSCL-CLPELLK---VSGVCKRWYRLASDES   47 (336)
T ss_dssp             ---CCSSSSCHHHHHHHHTTS-CHHHHHH---TTSSCHHHHHHHTCST
T ss_pred             cccCChhhCCHHHHHHHHHhC-CHHHHHH---HHHHHHHHHHHhcCch
Confidence            346889999999999999999 9999999   9999999999986543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.47  E-value=0.0059  Score=58.47  Aligned_cols=197  Identities=9%  Similarity=0.006  Sum_probs=111.8

Q ss_pred             cceEEEecCCCcEEecC-------CCCCCCCce-EEee--CCeEEEEeecCC----CccEEEEcCCCCCeecCCCCCCCC
Q 035663           73 QSCTFFNPKTKKFREIP-------LPEVKGRWV-SCSS--HGWLLTVSCLDE----TQNMFLLHPFTRSQVKLPPPPPGT  138 (297)
Q Consensus        73 ~~~~~~~~~~~~~~~~~-------~p~~~~~~~-~~s~--~Gwll~~~~~~~----~~~~~l~NP~T~~~i~LP~~~~~~  138 (297)
                      +....||+.+++|..+.       +|. +.... .+..  +|-+++.-+.+.    ...+.++||.|.+|..+++++...
T Consensus       412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~-~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R  490 (695)
T 2zwa_A          412 NEILQLSIHYDKIDMKNIEVSSSEVPV-ARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTR  490 (695)
T ss_dssp             CCEEEEEECSSCEEEEECCCCCSCCCC-CCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCC
T ss_pred             CcEEEEECCCCeEEEeccCCCCCCCCc-cccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCc
Confidence            34668999999998876       232 12222 2244  776666432222    257899999999999998776432


Q ss_pred             CceeecCceEEEecCCCCCCEEEEEEeC--CCCeEEEEecCCCceEeeccC---cccccCCcCeEEeCCccccCCeEEEe
Q 035663          139 QLQFLNGLRVITSTSPLDPDCLVLASLY--VSSKLAFCRPGDRNWTSIVHD---QYIRFTNTSAHFYDGRNCCKGYFYCL  213 (297)
Q Consensus       139 ~~~~~~~~~~~ls~~p~~~~~~Vv~~~~--~~~~l~~~~~g~~~W~~~~~~---~~~~~~~~d~v~~~~~~~~~G~~Y~l  213 (297)
                      ..     ..++...    ++.+.+ +++  ....+..|.+..++|+.+...   +..+....-+++...    +|++|++
T Consensus       491 ~~-----h~~~~~~----~~~iyv-~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~----~~~iyv~  556 (695)
T 2zwa_A          491 FR-----HSACSLP----DGNVLI-LGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV----SKQGIIL  556 (695)
T ss_dssp             BS-----CEEEECT----TSCEEE-ECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT----TTEEEEE
T ss_pred             cc-----ceEEEEc----CCEEEE-ECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC----CCEEEEE
Confidence            11     1122211    222222 222  122788999999999998852   111111111333320    1789988


Q ss_pred             ccC--------CcEEEEecCCCCC------CceecCCCCCCccccCCceeEEeeeC-CcEEEEEEEccCCCCCCCCceee
Q 035663          214 GSC--------NFIFRIRFDHPHA------PTAEAMPFKPHEYCCNARYNYLVELN-SDLFIVSRFLIPHKSYPCELTCA  278 (297)
Q Consensus       214 ~~~--------g~i~~~d~~~~~~------~~~~~~p~~~~~~~~~~~~~~LVes~-G~LllV~~~~~~~~~~~~~~~~~  278 (297)
                      ...        ..+++||+..+.|      .....+|. ..     ......+..+ |+|++++-......     ....
T Consensus       557 GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~-~~-----R~~~~~~~~~~~~iyv~GG~~~~~~-----~~~~  625 (695)
T 2zwa_A          557 GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPL-FQ-----RYGSQIKYITPRKLLIVGGTSPSGL-----FDRT  625 (695)
T ss_dssp             CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGG-GC-----CBSCEEEEEETTEEEEECCBCSSCC-----CCTT
T ss_pred             CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCC-CC-----cccceEEEeCCCEEEEECCccCCCC-----CCCC
Confidence            632        3699999999984      32112221 11     1223445556 89999876543200     0123


Q ss_pred             EEEEEEECCCCceeecc
Q 035663          279 FIVCKLDLETEKWIMVN  295 (297)
Q Consensus       279 ~~V~~ld~~~~~W~~v~  295 (297)
                      -.|+.+|.++++|..+.
T Consensus       626 ~~v~~yd~~t~~W~~~~  642 (695)
T 2zwa_A          626 NSIISLDPLSETLTSIP  642 (695)
T ss_dssp             TSEEEEETTTTEEEECC
T ss_pred             CeEEEEECCCCeEEEee
Confidence            45788899999998653

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.34  E-value=4e-05  Score=64.65  Aligned_cols=39  Identities=21%  Similarity=0.368  Sum_probs=37.1

Q ss_pred             CCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhhh
Q 035663            8 WSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLY   50 (297)
Q Consensus         8 ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~   50 (297)
                      |.+||.|++..|++.| ++.|+.+   +..|||.||.++.++.
T Consensus         5 l~~LP~ei~l~IlsfL-~p~DL~~---l~~vcr~Wr~la~D~~   43 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFL-SPHDLCQ---LGSTNHYWNETVRDPI   43 (312)
T ss_dssp             HHHSCHHHHHHHHHTS-CHHHHHH---HHTTCHHHHHHHTCHH
T ss_pred             hHhCCHHHHHHHHhcC-CHHHHHH---HHHHHHHHHHHhccch
Confidence            5679999999999999 9999999   9999999999999886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.21  E-value=0.00011  Score=68.64  Aligned_cols=39  Identities=26%  Similarity=0.458  Sum_probs=29.6

Q ss_pred             CCCCCCCCcHHHHHHHHhhcCC-chhhhccccccccChhHHHhh
Q 035663            4 QQLSWSSLPDELLSVIIQKLID-SDDILNCAVCAAVCSSWQSVV   46 (297)
Q Consensus         4 ~~~~ws~LP~dll~~I~~rL~~-~~d~~r~~~~~~VCk~Wr~~~   46 (297)
                      +...|+.||+|++..|+.+| + ..|+.+   ++.|||.|+.+.
T Consensus         2 ~~d~~~~LPdevL~~If~~L-~~~~d~~~---~s~vck~W~~~~   41 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFI-QLDKDRNS---VSLVCKSWYEIE   41 (594)
T ss_dssp             --------CHHHHHHHHHTC-CCHHHHHH---HHTSCHHHHHHH
T ss_pred             cccchhhCCHHHHHHHHhhc-CCchhHHH---HHHHHHHHHHhh
Confidence            45679999999999999999 7 999999   999999999984

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.76  E-value=0.0007  Score=60.70  Aligned_cols=40  Identities=30%  Similarity=0.502  Sum_probs=36.6

Q ss_pred             CCCCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhh
Q 035663            6 LSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDL   49 (297)
Q Consensus         6 ~~ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~   49 (297)
                      -..+.||+|++..|+..| +..|+.+   ++.|||.|+.++.+.
T Consensus        17 d~~~~lp~e~~~~i~~~l-~~~~l~~---~~~v~~~~~~~~~~~   56 (445)
T 2ovr_B           17 DFISLLPKELALYVLSFL-EPKDLLQ---AAQTCRYWRILAEDN   56 (445)
T ss_dssp             STTTSSCHHHHHHHHTTS-CHHHHHH---HTTSCHHHHHHHTCS
T ss_pred             ChhHHCCHHHHHHHHHhC-CHHHHHH---HHHHhHHHHhhcCch
Confidence            347889999999999999 9999999   999999999998765

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.70  E-value=0.045  Score=52.34  Aligned_cols=199  Identities=15%  Similarity=0.060  Sum_probs=103.0

Q ss_pred             cceEEEecCCCcEEecC-CCCCCCCceEE-e-eCCeEEEEeecCCCccEEEEcCCCCCeecCCCCCCCCCceeecCceEE
Q 035663           73 QSCTFFNPKTKKFREIP-LPEVKGRWVSC-S-SHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVI  149 (297)
Q Consensus        73 ~~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s-~~Gwll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~  149 (297)
                      +....||+.+++|..+. +|. +...... . .+|-+++.-+.+....+.++||-|.+|..+++....+..+.   ...+
T Consensus       468 ~dv~~yd~~t~~W~~~~~~p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~---~~~a  543 (695)
T 2zwa_A          468 SDNWIFDMKTREWSMIKSLSH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSL---VSAG  543 (695)
T ss_dssp             CCCEEEETTTTEEEECCCCSB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCC---BSCE
T ss_pred             ccEEEEeCCCCcEEECCCCCC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccc---ceeE
Confidence            35678999999998873 343 2222223 4 47766663323322389999999999999886321110000   0111


Q ss_pred             EecCCCCCCEEEEEEeCC-------CCeEEEEecCCCc------eEeeccC-cccccCCcCeEEeCCccccCCeEEEecc
Q 035663          150 TSTSPLDPDCLVLASLYV-------SSKLAFCRPGDRN------WTSIVHD-QYIRFTNTSAHFYDGRNCCKGYFYCLGS  215 (297)
Q Consensus       150 ls~~p~~~~~~Vv~~~~~-------~~~l~~~~~g~~~------W~~~~~~-~~~~~~~~d~v~~~~~~~~~G~~Y~l~~  215 (297)
                      +..+.. .+.+.+ +.+.       ...+..|.+..+.      |+.+... ...+....-+++-+      |++|++..
T Consensus       544 ~v~~~~-~~~iyv-~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~------~~iyv~GG  615 (695)
T 2zwa_A          544 LEFDPV-SKQGII-LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITP------RKLLIVGG  615 (695)
T ss_dssp             EEEETT-TTEEEE-ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEET------TEEEEECC
T ss_pred             EEEeCC-CCEEEE-ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCC------CEEEEECC
Confidence            111111 122222 2221       2467889999888      7777552 12222221223333      88998864


Q ss_pred             ---------CCcEEEEecCCCCCCceecCCCCCCc-cccCCceeEEeeeC-CcEEEEEEEccCCCCCCCCceeeEEEEEE
Q 035663          216 ---------CNFIFRIRFDHPHAPTAEAMPFKPHE-YCCNARYNYLVELN-SDLFIVSRFLIPHKSYPCELTCAFIVCKL  284 (297)
Q Consensus       216 ---------~g~i~~~d~~~~~~~~~~~~p~~~~~-~~~~~~~~~LVes~-G~LllV~~~~~~~~~~~~~~~~~~~V~~l  284 (297)
                               ...+.+||+....|.. ..+|....+ ..........+..+ |+|++++-....   +....... .||++
T Consensus       616 ~~~~~~~~~~~~v~~yd~~t~~W~~-~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~c---fsfGt~~n-~i~~l  690 (695)
T 2zwa_A          616 TSPSGLFDRTNSIISLDPLSETLTS-IPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATC---YGFGSVTN-VGLKL  690 (695)
T ss_dssp             BCSSCCCCTTTSEEEEETTTTEEEE-CCCCHHHHHHSCCCCSSCEEECC---CEEEECCEEEC---TTSCEEEC-CCEEE
T ss_pred             ccCCCCCCCCCeEEEEECCCCeEEE-eeccccccCCCCccceeeeEEEeCCCEEEEEeCCccC---cCcccccc-ceEEE
Confidence                     2369999999998873 333321000 00001112234434 588888764321   11112234 88888


Q ss_pred             ECCC
Q 035663          285 DLET  288 (297)
Q Consensus       285 d~~~  288 (297)
                      |...
T Consensus       691 dl~~  694 (695)
T 2zwa_A          691 IAIA  694 (695)
T ss_dssp             EECC
T ss_pred             EEEc
Confidence            8754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.67  E-value=0.012  Score=55.80  Aligned_cols=139  Identities=12%  Similarity=0.025  Sum_probs=82.5

Q ss_pred             eEEEecCCCcEEec-CCCCCCCCceEE-ee-CCeEEEEeecCCC---------ccEEEEcCCCCCeecCCCCCCCCC-ce
Q 035663           75 CTFFNPKTKKFREI-PLPEVKGRWVSC-SS-HGWLLTVSCLDET---------QNMFLLHPFTRSQVKLPPPPPGTQ-LQ  141 (297)
Q Consensus        75 ~~~~~~~~~~~~~~-~~p~~~~~~~~~-s~-~Gwll~~~~~~~~---------~~~~l~NP~T~~~i~LP~~~~~~~-~~  141 (297)
                      ...||+..++|..+ ++|.  ...... .. +|-+++.-+.+..         ..+.++||.|++|..+++.+.... ..
T Consensus       168 ~~~~dp~~~~W~~~~~~P~--~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~  245 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLPI--VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFC  245 (656)
T ss_dssp             CCCCCTTSCEEEEEEECSS--CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSS
T ss_pred             cccCCCCCCeeeeeccCCC--CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcc
Confidence            34577778888754 4554  222333 43 7766663222211         268899999999998876543221 10


Q ss_pred             eecCceEEEecCCCCCCEEEEEEeC-CCCeEEEEecCCCceEeeccCcccccCCcCeEEe-CCccccCCeEEEecc--C-
Q 035663          142 FLNGLRVITSTSPLDPDCLVLASLY-VSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFY-DGRNCCKGYFYCLGS--C-  216 (297)
Q Consensus       142 ~~~~~~~~ls~~p~~~~~~Vv~~~~-~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~-~~~~~~~G~~Y~l~~--~-  216 (297)
                          ..+++..    ++.+ +++.+ ....+.+|.+..++|+.+..+...+... ..+.. +      |++|++..  + 
T Consensus       246 ----~~~~~~~----~g~l-yv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~-s~~~~~d------g~iyv~GG~~~~  309 (656)
T 1k3i_A          246 ----PGISMDG----NGQI-VVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQ-SSATMSD------GRVFTIGGSWSG  309 (656)
T ss_dssp             ----CEEEECT----TSCE-EEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSC-EEEECTT------SCEEEECCCCCS
T ss_pred             ----ccccCCC----CCCE-EEeCCCCCCceEEecCcCCceeECCCCCcccccc-ceEEecC------CeEEEEeCcccC
Confidence                0122221    1222 22333 3457899999999999987652111111 44555 7      99999975  1 


Q ss_pred             ----CcEEEEecCCCCCCc
Q 035663          217 ----NFIFRIRFDHPHAPT  231 (297)
Q Consensus       217 ----g~i~~~d~~~~~~~~  231 (297)
                          ..+.+||+..+.|..
T Consensus       310 ~~~~~~~e~yd~~t~~W~~  328 (656)
T 1k3i_A          310 GVFEKNGEVYSPSSKTWTS  328 (656)
T ss_dssp             SSCCCCEEEEETTTTEEEE
T ss_pred             CcccccceEeCCCCCccee
Confidence                368999999888864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.40  E-value=0.0011  Score=59.41  Aligned_cols=39  Identities=26%  Similarity=0.507  Sum_probs=35.3

Q ss_pred             CCCCcHH----HHHHHHhhcCCchhhhccccccccChhHHHhhhhhh
Q 035663            8 WSSLPDE----LLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLY   50 (297)
Q Consensus         8 ws~LP~d----ll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~   50 (297)
                      .+.||+|    |+..||..| +..|+.+   ++.|||.|+.++.++.
T Consensus        11 ~~~lp~e~~~~~~~~i~~~l-~~~~l~~---~~~v~~~w~~~~~~~~   53 (435)
T 1p22_A           11 ITALPARGLDHIAENILSYL-DAKSLCA---AELVCKEWYRVTSDGM   53 (435)
T ss_dssp             HHHTGGGTCHHHHHHHHTTC-CHHHHHH---HHHHCHHHHHHHHHTT
T ss_pred             HHHCCcchHHHHHHHHHhcC-CHHHHHH---HHHHHHHHHHHhcChH
Confidence            4569999    999999999 9999999   9999999999987653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.18  E-value=0.014  Score=55.34  Aligned_cols=105  Identities=7%  Similarity=-0.081  Sum_probs=65.3

Q ss_pred             eEEEEecCCCceEeeccCcccccCCc-CeE-EeCCccccCCeEEEeccC--CcEEEEecCCCCCCceecCCCCCCccccC
Q 035663          170 KLAFCRPGDRNWTSIVHDQYIRFTNT-SAH-FYDGRNCCKGYFYCLGSC--NFIFRIRFDHPHAPTAEAMPFKPHEYCCN  245 (297)
Q Consensus       170 ~l~~~~~g~~~W~~~~~~~~~~~~~~-d~v-~~~~~~~~~G~~Y~l~~~--g~i~~~d~~~~~~~~~~~~p~~~~~~~~~  245 (297)
                      .+.+|.+..++|+.+..+...+.... ..+ ..+      |++|++...  ..+.+||+..+.|.....+|.+       
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~------g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~-------  286 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN------GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA-------  286 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT------SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC-------
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCccccccCCCC------CCEEEeCCCCCCceEEecCcCCceeECCCCCcc-------
Confidence            56789999999998765411111111 223 245      999999753  3799999998888752233331       


Q ss_pred             CceeEEeee-CCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeec
Q 035663          246 ARYNYLVEL-NSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMV  294 (297)
Q Consensus       246 ~~~~~LVes-~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v  294 (297)
                      ......+.. +|+|++++-....       ....-.++.+|.++++|.++
T Consensus       287 R~~~s~~~~~dg~iyv~GG~~~~-------~~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          287 RGYQSSATMSDGRVFTIGGSWSG-------GVFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             CSSCEEEECTTSCEEEECCCCCS-------SSCCCCEEEEETTTTEEEEE
T ss_pred             ccccceEEecCCeEEEEeCcccC-------CcccccceEeCCCCCcceeC
Confidence            112334455 8999999864322       11223466778889999986

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.95  E-value=0.0024  Score=59.56  Aligned_cols=39  Identities=15%  Similarity=0.390  Sum_probs=34.5

Q ss_pred             CCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhh
Q 035663            8 WSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDL   49 (297)
Q Consensus         8 ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~   49 (297)
                      .++||+|++..|+.+|.+..|+.+   ++.|||.|+.+....
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~---~s~vck~W~~~~~~~   51 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDS---ASLVCRRWFKIDSET   51 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHH---HTTSCHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHH---HHHHhHHHHHhhhcc
Confidence            357999999999999988999999   999999999985433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	297
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	0.002

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (76), Expect = 0.002
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 8  WSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKD 48
          W SLPDELL  I   L    ++L     + VC  W  +  D
Sbjct: 1  WDSLPDELLLGIFSCL-CLPELLK---VSGVCKRWYRLASD 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	297
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.11
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.23
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.21
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.67
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	97.51
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	97.15
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.7
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.64

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.1e-11  Score=70.70  Aligned_cols=38  Identities=39%  Similarity=0.726  Sum_probs=36.1

Q ss_pred             CCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhh
Q 035663            8 WSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDL   49 (297)
Q Consensus         8 ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~   49 (297)
                      |..||+|++..|+.+| |..|++|   ++.|||.|+.++.++
T Consensus         1 f~~LP~eil~~If~~L-~~~dl~~---~~~Vcr~w~~l~~~~   38 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCL-CLPELLK---VSGVCKRWYRLASDE   38 (41)
T ss_dssp             CCSSCHHHHHHHHTTS-CGGGHHH---HHTTCHHHHHHHTCG
T ss_pred             CCcCCHHHHHHHHHcC-CHHHHHH---HHHHHHHHHHHhCCc
Confidence            7899999999999999 9999999   999999999998765

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=1.3e-07  Score=65.85  Aligned_cols=37  Identities=30%  Similarity=0.556  Sum_probs=34.3

Q ss_pred             CCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhh
Q 035663            8 WSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKD   48 (297)
Q Consensus         8 ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~   48 (297)
                      .+.||+||+..|++.| +..|+++   ++.|||.|+.++.+
T Consensus         6 ~~~LP~Ell~~I~s~L-d~~dL~~---~s~Vcr~W~~~~~~   42 (100)
T d1nexb1           6 ITSLPFEISLKIFNYL-QFEDIIN---SLGVSQNWNKIIRK   42 (100)
T ss_dssp             HHHSCHHHHHHHHTTS-CHHHHHH---HTTTCHHHHHHHHT
T ss_pred             hhhCCHHHHHHHHHCC-CHHHHHH---HHHHHHHHHHHHHC
Confidence            4679999999999999 9999999   99999999998864

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.5e-07  Score=64.59  Aligned_cols=40  Identities=30%  Similarity=0.536  Sum_probs=37.0

Q ss_pred             CCCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhhh
Q 035663            7 SWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLY   50 (297)
Q Consensus         7 ~ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~   50 (297)
                      ..+.||+||+..|+.+| ++.|+++   ++.|||.|+.++.++.
T Consensus        18 ~i~~LP~Eil~~Ils~L-d~~dL~~---~~~vcr~w~~l~~~~~   57 (102)
T d2ovrb1          18 FISLLPKELALYVLSFL-EPKDLLQ---AAQTCRYWRILAEDNL   57 (102)
T ss_dssp             TTTSSCHHHHHHHHTTS-CHHHHHH---HTTSCHHHHHHHTCSH
T ss_pred             ChhhCCHHHHHHHHHcC-CHHHHHH---HHHHHHHHHHHHCCHH
Confidence            36789999999999999 9999999   9999999999988765

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=7.9e-06  Score=58.27  Aligned_cols=39  Identities=28%  Similarity=0.549  Sum_probs=34.7

Q ss_pred             CCCCc----HHHHHHHHhhcCCchhhhccccccccChhHHHhhhhhh
Q 035663            8 WSSLP----DELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLY   50 (297)
Q Consensus         8 ws~LP----~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~   50 (297)
                      -+.||    +||+..|++.| +..|+.+   ++.|||.|+.++.++.
T Consensus        11 i~~LP~~l~~EI~~~Ils~L-d~~dL~~---~s~Vck~W~~l~~d~~   53 (118)
T d1p22a1          11 ITALPARGLDHIAENILSYL-DAKSLCA---AELVCKEWYRVTSDGM   53 (118)
T ss_dssp             HHHTGGGTCHHHHHHHHTTC-CHHHHHH---HHHHCHHHHHHHHHTT
T ss_pred             HHHCCCCChHHHHHHHHHcC-CHHHHHH---HHHHHHHHHHHHcCHH
Confidence            34577    59999999999 9999999   9999999999998765

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.0092  Score=47.77  Aligned_cols=191  Identities=13%  Similarity=0.115  Sum_probs=109.4

Q ss_pred             cceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecCC---CccEEEEcCCCCCeecCCCCCCCCCceeecCce
Q 035663           73 QSCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLDE---TQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLR  147 (297)
Q Consensus        73 ~~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~~---~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~  147 (297)
                      .....||+...+|..+. +|. +.....+ ..+|-+.+.-+.+.   .......++-|..+...|........     ..
T Consensus        70 ~~~~~yd~~~~~w~~~~~~p~-~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-----~~  143 (288)
T d1zgka1          70 SALDCYNPMTNQWSPCAPMSV-PRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-----VG  143 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSS-CCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-----CE
T ss_pred             chhhhcccccccccccccccc-eecceeccccceeeEEecceecccccceeeeeccccCcccccccccccccc-----ce
Confidence            34567999999998764 333 2222223 44665555211111   24677899999999887776543211     01


Q ss_pred             EEEecCCCCCCEEEEEEeC-----CCCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC------
Q 035663          148 VITSTSPLDPDCLVLASLY-----VSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC------  216 (297)
Q Consensus       148 ~~ls~~p~~~~~~Vv~~~~-----~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~------  216 (297)
                      ++. .    .+...+ +.+     ....+..|.+..+.|......... ......+..+      +++|.+...      
T Consensus       144 ~~~-~----~~~~~~-~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~------~~i~i~GG~~~~~~~  210 (288)
T d1zgka1         144 VAV-L----NRLLYA-VGGFDGTNRLNSAECYYPERNEWRMITAMNTI-RSGAGVCVLH------NCIYAAGGYDGQDQL  210 (288)
T ss_dssp             EEE-E----TTEEEE-ECCBCSSCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEET------TEEEEECCBCSSSBC
T ss_pred             eee-e----eecceE-ecCcccccccceEEEeeccccccccccccccc-ccccccccee------eeEEEecCccccccc
Confidence            111 1    111111 111     124567899999999987764111 0011455566      888887531      


Q ss_pred             CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeeccc
Q 035663          217 NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN  296 (297)
Q Consensus       217 g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~  296 (297)
                      .....+|+....|....++|.+       ......+..+|+|++++-....        ...-.||.+|.++++|.++..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~p~~-------r~~~~~~~~~~~l~v~GG~~~~--------~~~~~v~~yd~~~~~W~~~~~  275 (288)
T d1zgka1         211 NSVERYDVETETWTFVAPMKHR-------RSALGITVHQGRIYVLGGYDGH--------TFLDSVECYDPDTDTWSEVTR  275 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSC-------CBSCEEEEETTEEEEECCBCSS--------CBCCEEEEEETTTTEEEEEEE
T ss_pred             cceeeeeecceeeecccCccCc-------ccceEEEEECCEEEEEecCCCC--------eecceEEEEECCCCEEEECCC
Confidence            2678888888777641223321       1234556678999998654321        222247888999999999876


Q ss_pred             C
Q 035663          297 I  297 (297)
Q Consensus       297 L  297 (297)
                      |
T Consensus       276 ~  276 (288)
T d1zgka1         276 M  276 (288)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.039  Score=43.84  Aligned_cols=190  Identities=14%  Similarity=0.108  Sum_probs=106.2

Q ss_pred             cceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeec----C---CCccEEEEcCCCCCeecCCCCCCCCCceee
Q 035663           73 QSCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCL----D---ETQNMFLLHPFTRSQVKLPPPPPGTQLQFL  143 (297)
Q Consensus        73 ~~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~----~---~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~  143 (297)
                      .....||+.+++|..+. +|.+ +..... ..+|-+++.-+.    +   ....+.++||.|..|..+|+++.....   
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~-R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~---   94 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVP-RSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR---   94 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSC-CBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT---
T ss_pred             ceEEEEECCCCeEEECCCCCCc-cceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecc---
Confidence            45668999999998873 5542 222222 445544442111    0   125789999999999999987654321   


Q ss_pred             cCceEEEecCCCCCCEEEEEEeC-----CCCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEecc---
Q 035663          144 NGLRVITSTSPLDPDCLVLASLY-----VSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGS---  215 (297)
Q Consensus       144 ~~~~~~ls~~p~~~~~~Vv~~~~-----~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~---  215 (297)
                        ..++..     ++.+.+ +.+     .......+......|.........+... ..+..+      +++|.+..   
T Consensus        95 --~~~~~~-----~~~i~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~------~~~~~~GG~~~  159 (288)
T d1zgka1          95 --IGVGVI-----DGHIYA-VGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVLN------RLLYAVGGFDG  159 (288)
T ss_dssp             --CEEEEE-----TTEEEE-ECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEET------TEEEEECCBCS
T ss_pred             --eecccc-----ceeeEE-ecceecccccceeeeeccccCccccccccccccccc-eeeeee------ecceEecCccc
Confidence              112221     122211 111     1234567888899998877651111111 445566      77777642   


Q ss_pred             ---CCcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCcee
Q 035663          216 ---CNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWI  292 (297)
Q Consensus       216 ---~g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~  292 (297)
                         ...+..+|+..+.|......+..       ....-.+..+|+++++.-...        ....-..++.|..+++|.
T Consensus       160 ~~~~~~~~~~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~i~GG~~~--------~~~~~~~~~~~~~~~~~~  224 (288)
T d1zgka1         160 TNRLNSAECYYPERNEWRMITAMNTI-------RSGAGVCVLHNCIYAAGGYDG--------QDQLNSVERYDVETETWT  224 (288)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSC-------CBSCEEEEETTEEEEECCBCS--------SSBCCCEEEEETTTTEEE
T ss_pred             ccccceEEEeeccccccccccccccc-------cccccccceeeeEEEecCccc--------cccccceeeeeecceeee
Confidence               13688899887766531112221       122334455677776654332        233345677788889998


Q ss_pred             eccc
Q 035663          293 MVNN  296 (297)
Q Consensus       293 ~v~~  296 (297)
                      ++..
T Consensus       225 ~~~~  228 (288)
T d1zgka1         225 FVAP  228 (288)
T ss_dssp             ECCC
T ss_pred             cccC
Confidence            8764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.70  E-value=0.019  Score=47.86  Aligned_cols=108  Identities=7%  Similarity=-0.085  Sum_probs=64.5

Q ss_pred             eEEEEecCCCceEeeccC--cccccCCcCeEEeCCccccCCeEEEeccCC--cEEEEecCCCCCCceecCCCCCCccccC
Q 035663          170 KLAFCRPGDRNWTSIVHD--QYIRFTNTSAHFYDGRNCCKGYFYCLGSCN--FIFRIRFDHPHAPTAEAMPFKPHEYCCN  245 (297)
Q Consensus       170 ~l~~~~~g~~~W~~~~~~--~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g--~i~~~d~~~~~~~~~~~~p~~~~~~~~~  245 (297)
                      ...+|.+..++|+....+  ....+.....+..+      |++|+....+  .+.+||+..+.|.....+|.  ..+   
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~------g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~--~r~---  121 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN------GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV--ARG---  121 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT------SCEEEECSSSTTCEEEEEGGGTEEEECCCCSS--CCS---
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecC------CcEEEeecCCCcceeEecCccCcccccccccc--ccc---
Confidence            356899999999876543  11111111233345      9999987543  78999999888864222332  111   


Q ss_pred             CceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeeccc
Q 035663          246 ARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN  296 (297)
Q Consensus       246 ~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~  296 (297)
                      .. .-.+-.+|+++++......       ....-.++..|.++++|..+..
T Consensus       122 ~~-~~~~~~dG~v~v~GG~~~~-------~~~~~~v~~yd~~~~~W~~~~~  164 (387)
T d1k3ia3         122 YQ-SSATMSDGRVFTIGGSWSG-------GVFEKNGEVYSPSSKTWTSLPN  164 (387)
T ss_dssp             SC-EEEECTTSCEEEECCCCCS-------SSCCCCEEEEETTTTEEEEETT
T ss_pred             cc-ceeeecCCceeeecccccc-------ccccceeeeecCCCCceeecCC
Confidence            12 2233346999888755432       1222245677899999988753

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.64  E-value=0.13  Score=42.44  Aligned_cols=177  Identities=10%  Similarity=0.070  Sum_probs=92.6

Q ss_pred             eEEEecCCCcEEecC---CCCCCCCceEE-eeCCeEEEEeecCCCccEEEEcCCCCCeecCCCCCCCCCceeecCceEEE
Q 035663           75 CTFFNPKTKKFREIP---LPEVKGRWVSC-SSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVIT  150 (297)
Q Consensus        75 ~~~~~~~~~~~~~~~---~p~~~~~~~~~-s~~Gwll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~l  150 (297)
                      ...||+.+++|-...   .|...+..... ..+|-++..- -.....+.++||-|..|..+|.++..+..     ..+++
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~G-g~~~~~~~~yd~~~~~w~~~~~~~~~r~~-----~~~~~  127 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTG-GNDAKKTSLYDSSSDSWIPGPDMQVARGY-----QSSAT  127 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEEC-SSSTTCEEEEEGGGTEEEECCCCSSCCSS-----CEEEE
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEee-cCCCcceeEecCccCcccccccccccccc-----cceee
Confidence            457999999886432   22211122222 4567665532 22346789999999999999987754321     11222


Q ss_pred             ecCCCCCCEEEEEEeC----CCCeEEEEecCCCceEeeccC--ccccc--------CCcCe-EE--eCCccccCCeEEEe
Q 035663          151 STSPLDPDCLVLASLY----VSSKLAFCRPGDRNWTSIVHD--QYIRF--------TNTSA-HF--YDGRNCCKGYFYCL  213 (297)
Q Consensus       151 s~~p~~~~~~Vv~~~~----~~~~l~~~~~g~~~W~~~~~~--~~~~~--------~~~d~-v~--~~~~~~~~G~~Y~l  213 (297)
                      ..   ++...|+.-..    ....+..|.+..++|+.++..  .....        ..... ++  .+      |++|..
T Consensus       128 ~~---dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------G~~~~~  198 (387)
T d1k3ia3         128 MS---DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKK------GSVFQA  198 (387)
T ss_dssp             CT---TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGG------GCEEEC
T ss_pred             ec---CCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCC------CCEEEe
Confidence            22   23333222111    124678999999999998754  10000        00111 11  13      777766


Q ss_pred             ccC-CcEEEEecCCCCCCceecCCCC--CCccccCCceeEEeeeCCcEEEEEEEcc
Q 035663          214 GSC-NFIFRIRFDHPHAPTAEAMPFK--PHEYCCNARYNYLVELNSDLFIVSRFLI  266 (297)
Q Consensus       214 ~~~-g~i~~~d~~~~~~~~~~~~p~~--~~~~~~~~~~~~LVes~G~LllV~~~~~  266 (297)
                      ... +.+..+|.....|.....++..  ............+...+|+++++.-...
T Consensus       199 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~  254 (387)
T d1k3ia3         199 GPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPD  254 (387)
T ss_dssp             CSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSS
T ss_pred             cCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccC
Confidence            543 4667777776665431111110  0000011234455667799888876554