Citrus Sinensis ID: 035670

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
Protein Sequence
MAVDSSPPVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQWWSMEGADVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVPKHCWKEVAAEEESSMVVCRFVSPA
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEEEcccccccccccccccccHHHHHHHHHccccEEEEEEcccccEEEEEcccEEEEEccEEEEEccccHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccHHHHHHHHHHHcccccccEEEEcccccccccEEEEEccccccccccccEEEEEccccHHHHHcccccccccccHHHHHHHHccccccccccccccccccccccccccccccEEEEEEccccccEEEEEEEEccccccccHHHHHHHHHHcccccEEEEEEEEccccccccccccccccccccccEEEEcccccEEEEEEEEEccccccccccccccccccccccHHHHccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccHHcccccccccccccHHEEEEEEccccccccccccccccccHHHHHHHHHHccEEEEEEEccccccEEEEEcccEEEcccEEEEEcccHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccHHHHHHHHHHHHccccccEEEEEcccccccEEEEEEcccccccccccEEEEEEccccHHHHHHHcccccccccHHHHHHHcccHHcccccEEcccccccccccccccccccEEEEEEccccccEEEEEEEcccccccccHHHHHHHHHHHHccccEEEEEEEcccccHHHcccccccccEEccEEEEEcccccEEEEEEEEEEccccccccccHHHHHHccccccHHHccccEEEEEEccc
Coil and Loop (DISEMBL)
mavdssppvaspigfeGFEKRLeitfspapiftdpsglglraLTRSQLDSFLDLAKCTivsqlsntefdsyvlsesslfvfpskiilktcgttkllssipqilklsdSLSLAVSSvkysrgsfifpnyqpsphccfseeVSTLNEHFGYlnakahvigdpkfpnrnwhvysaskersfDGVVTLEMCMTGLDRKKAAVFYksssgpggasemtkmsgiseilpshvicdfefdpcgysmngidgpafstvhvtpedgfsyasyeaagfdlrlvRFEPLVKRVlnsfaprefsvavtcgsgtqwwsmegadvegyssETAVKQElagggcvvyktysvdpnarcavsappkvpkhcWKEVAAEEESSMVVCRFVSPA
Flexible Loop (DISEMBL)
mavdssppvaspIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNAKAhvigdpkfpnrNWHVYsaskersfdgVVTLEMCMTGLDRKKAAVFYKSssgpggasEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLnsfaprefsvavTCGSGTQWWSMEGADVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCavsappkvpKHCWKEVAAEEESSMVVCRFVSPA
Low Complexity Region (SEG)
MAVDSSPPVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQIlklsdslslavssvkYSRGSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQWWSMEGADVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVPKHCWKevaaeeessmvvCRFVSPA
Disordered region (IsUnstruct)
*************GFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVVTLEMCMTGLDRKKAAVFY*****************ISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQWWSMEGADVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVPKHCWKEVAA*****MVVCRF****
Disordered Region (DISOPRED)
*******PVASPIGFEGFEKRLEITFSPAPI******LGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQWWSMEGADVEGYSSETAVKQELAGGGCVVYKTYS*********************************CRFVSP*
Disordered Region (DISEMBL)
*********ASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVVTLEMCMTGLDRKKAAVFYKS**********TKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQWWSMEGADVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVPKHCWKEVAAEEESSMVVCRFVSPA
Disordered Region (DISPRO)
********VASPIGFEGFEKRLEITFSPAPIF****GLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQWWSMEGADVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVPKHCWKEVAAEEESSMVVCRFVSP*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVDSSPPVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQWWSMEGADVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVPKHCWKEVAAEEESSMVVCRFVSPA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	376	2.2.26 [Sep-21-2011]
O24575	400	S-adenosylmethionine deca	N/A	no	0.922	0.867	0.584	1e-113
Q0JC10	398	S-adenosylmethionine deca	no	no	0.930	0.879	0.566	1e-112
A2XV58	398	S-adenosylmethionine deca	N/A	no	0.930	0.879	0.566	1e-112
Q42829	393	S-adenosylmethionine deca	N/A	no	0.920	0.880	0.567	1e-109
Q42679	357	S-adenosylmethionine deca	N/A	no	0.914	0.963	0.571	1e-105
O04009	361	S-adenosylmethionine deca	N/A	no	0.920	0.958	0.545	4e-99
Q9M4D8	353	S-adenosylmethionine deca	N/A	no	0.914	0.974	0.537	5e-99
Q9AXE3	361	S-adenosylmethionine deca	N/A	no	0.904	0.941	0.544	9e-99
O80402	361	S-adenosylmethionine deca	N/A	no	0.920	0.958	0.543	1e-98
Q39676	381	S-adenosylmethionine deca	N/A	no	0.941	0.929	0.550	2e-98

>sp|O24575|DCAM_MAIZE S-adenosylmethionine decarboxylase proenzyme OS=Zea mays GN=SAMDC PE=2 SV=1

 Score =  407 bits (1045), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/363 (58%), Positives = 264/363 (72%), Gaps = 16/363 (4%)

Query: 2   AVDSSPPVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVS 61
           A D+SP   S IGFEG+EKRLEITFS AP+F DP G GLRAL+R+Q+DS LDLA+CTIVS
Sbjct: 6   AADASP--VSAIGFEGYEKRLEITFSEAPVFVDPHGRGLRALSRAQIDSVLDLARCTIVS 63

Query: 62  QLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRG 121
           +LSN +FDSYVLSESSLF++P KI++KTCGTTKLL +IP+IL+L++ LS+ +++VKYSRG
Sbjct: 64  ELSNKDFDSYVLSESSLFIYPLKIVIKTCGTTKLLLTIPRILELAEELSMPLAAVKYSRG 123

Query: 122 SFIFPNYQPSPHCCFSEEVSTLNEHFGYLNA--KAHVIGDPKFPNRNWHVYSASKERSFD 179
           +FIFP  QP+PH  FSEEV+ LN +FG L +   A+VIGDP  P + WHV+ A+ E    
Sbjct: 124 TFIFPGAQPAPHRSFSEEVAALNRYFGGLKSGGNAYVIGDPARPGQKWHVFYAT-EYPEQ 182

Query: 180 GVVTLEMCMTGLDRKKAAVFYKSSSGPGG--ASEMTKMSGISEILPSHVICDFEFDPCGY 237
            +V LEMCMTGLD+KKA VF+K+++      A EMTK+SGISEI+P   ICDF+F+PCGY
Sbjct: 183 PMVNLEMCMTGLDKKKACVFFKTNADGNTTCAKEMTKLSGISEIIPEMEICDFDFEPCGY 242

Query: 238 SMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTC 297
           SMN I G AFST+HVTPEDGFSYASYE  G D   + +  LVKRVL  F P EFSVAVT 
Sbjct: 243 SMNAIHGSAFSTIHVTPEDGFSYASYEVMGLDATALSYGDLVKRVLRCFGPSEFSVAVTI 302

Query: 298 ----GSGTQWWSMEGADVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVPK 353
               G    W    GA+V  Y     V+QEL GGG +VY+++     A  AV+  PK   
Sbjct: 303 FGGRGHAGTWGKALGAEV--YDCNNMVEQELPGGGLLVYQSFCA---AEDAVATSPKSVF 357

Query: 354 HCW 356
           HC+
Sbjct: 358 HCF 360

Zea mays (taxid: 4577)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 5EC: 0

>sp|Q0JC10|DCAM_ORYSJ S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. japonica GN=SAMDC PE=2 SV=1

 Score =  404 bits (1039), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/360 (56%), Positives = 265/360 (73%), Gaps = 10/360 (2%)

Query: 5   SSPPVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLS 64
           + PP  S IGFEG+EKRLEITFS AP+F DP G GLRAL+R+Q+DS LDLA+CTIVS+LS
Sbjct: 7   ADPPPVSAIGFEGYEKRLEITFSEAPVFADPDGRGLRALSRAQIDSVLDLARCTIVSELS 66

Query: 65  NTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFI 124
           N +FDSYVLSESSLF++  KI++KTCGTTKLL +IP+IL+L++ LS+ +++VKYSRG FI
Sbjct: 67  NKDFDSYVLSESSLFIYSDKIVIKTCGTTKLLLTIPRILELAEGLSMPLAAVKYSRGMFI 126

Query: 125 FPNYQPSPHCCFSEEVSTLNEHFGYLNA--KAHVIGDPKFPNRNWHVYSASKERSFDGVV 182
           FP+ QP+PH  FSEEV+ LN +FG+L +   A+VIGDP  P + WH+Y A++      +V
Sbjct: 127 FPSAQPAPHRSFSEEVAVLNRYFGHLKSGGNAYVIGDPAKPGQKWHIYYATQHPE-QPMV 185

Query: 183 TLEMCMTGLDRKKAAVFYKSSSG--PGGASEMTKMSGISEILPSHVICDFEFDPCGYSMN 240
           TLEMCMTGLD++KA+VF+K+S+      A EMTK+SGIS+I+P   ICDF+F+PCGYSMN
Sbjct: 186 TLEMCMTGLDKEKASVFFKTSADGHTSCAKEMTKLSGISDIIPEMEICDFDFEPCGYSMN 245

Query: 241 GIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSG 300
            I G AFST+HVTPEDGFSYASYE  GFD   + +  LVKRVL  F P EFSVAVT   G
Sbjct: 246 AIHGSAFSTIHVTPEDGFSYASYEVVGFDASTLAYGDLVKRVLRCFGPSEFSVAVTIFGG 305

Query: 301 ---TQWWSMEGADVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVPKHCWK 357
                 W+ E  + + Y     V+QEL  GG ++Y+++    +   AV +P  V  HC++
Sbjct: 306 HGHAGTWAKE-LNADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSV-LHCFE 363

Oryza sativa subsp. japonica (taxid: 39947)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|A2XV58|DCAM_ORYSI S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. indica GN=SAMDC PE=2 SV=2

 Score =  404 bits (1038), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/360 (56%), Positives = 265/360 (73%), Gaps = 10/360 (2%)

Query: 5   SSPPVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLS 64
           + PP  S IGFEG+EKRLEITFS AP+F DP G GLRAL+R+Q+DS LDLA+CTIVS+LS
Sbjct: 7   ADPPPVSAIGFEGYEKRLEITFSEAPVFADPDGRGLRALSRAQIDSVLDLARCTIVSELS 66

Query: 65  NTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFI 124
           N +FDSYVLSESSLF++  KI++KTCGTTKLL +IP+IL+L++ LS+ +++VKYSRG FI
Sbjct: 67  NKDFDSYVLSESSLFIYSDKIVIKTCGTTKLLLTIPRILELAEGLSMPLAAVKYSRGMFI 126

Query: 125 FPNYQPSPHCCFSEEVSTLNEHFGYLNA--KAHVIGDPKFPNRNWHVYSASKERSFDGVV 182
           FP+ QP+PH  FSEEV+ LN +FG+L +   A+VIGDP  P + WH+Y A++      +V
Sbjct: 127 FPSAQPAPHRSFSEEVAVLNRYFGHLKSGGNAYVIGDPAKPGQKWHIYYATQHPE-QPMV 185

Query: 183 TLEMCMTGLDRKKAAVFYKSSSG--PGGASEMTKMSGISEILPSHVICDFEFDPCGYSMN 240
           TLEMCMTGLD++KA+VF+K+S+      A EMTK+SGIS+I+P   ICDF+F+PCGYSMN
Sbjct: 186 TLEMCMTGLDKEKASVFFKTSADGHTSCAKEMTKLSGISDIIPEMEICDFDFEPCGYSMN 245

Query: 241 GIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSG 300
            I G AFST+HVTPEDGFSYASYE  GFD   + +  LVKRVL  F P EFSVAVT   G
Sbjct: 246 AIHGLAFSTIHVTPEDGFSYASYEVVGFDASTLAYGDLVKRVLRCFGPSEFSVAVTIFGG 305

Query: 301 ---TQWWSMEGADVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVPKHCWK 357
                 W+ E  + + Y     V+QEL  GG ++Y+++    +   AV +P  V  HC++
Sbjct: 306 HGHAGTWAKE-LNADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSV-LHCFE 363

Oryza sativa subsp. indica (taxid: 39946)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|Q42829|DCAM_HORCH S-adenosylmethionine decarboxylase proenzyme OS=Hordeum chilense GN=SAMDC PE=2 SV=1

 Score =  395 bits (1016), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/356 (56%), Positives = 259/356 (72%), Gaps = 10/356 (2%)

Query: 11  SPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDS 70
           S IGFEG+EKRLEITFS A IF DP G GLRAL+R+Q+DS LDLA+CTIVS+LSN +FDS
Sbjct: 6   SAIGFEGYEKRLEITFSEASIFADPHGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDS 65

Query: 71  YVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFPNYQP 130
           YVLSESSLF++  KI++KTCGTT LL +IP+IL+L++ L + +++VKYSRG FIFP  QP
Sbjct: 66  YVLSESSLFIYSQKIVIKTCGTTMLLLTIPRILELAEELCMPLAAVKYSRGMFIFPGAQP 125

Query: 131 SPHCCFSEEVSTLNEHFGYLNA--KAHVIGDPKFPNRNWHVYSASKERSFDGVVTLEMCM 188
           +PH  FSEEV  LN +FG+LN+   A+VIGDP  P + WH+Y A+ E+    +VTLEMCM
Sbjct: 126 APHRSFSEEVDVLNRYFGHLNSGGNAYVIGDPAKPGQKWHIYYAT-EQPEQPMVTLEMCM 184

Query: 189 TGLDRKKAAVFYKSSSGP--GGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPA 246
           TGLD+ KA+VF+K+ +      A EMTK+SGIS+I+P   +CDF+F+PCGYSMN I+G A
Sbjct: 185 TGLDKTKASVFFKTHADGHVSCAKEMTKLSGISDIIPEMEVCDFDFEPCGYSMNAINGSA 244

Query: 247 FSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQWWSM 306
           FST+HVTPEDGFSYASYE  G D   + +  +VKRVL  F P EFSVAVT   G    + 
Sbjct: 245 FSTIHVTPEDGFSYASYEVQGMDASALAYGDIVKRVLRCFGPSEFSVAVTIFGGRGHAAT 304

Query: 307 EGA--DVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSA-PPKVPKHCWKEV 359
            G   D E Y     V+QEL  GG ++Y++++   N   AVSA  P+   HC++ V
Sbjct: 305 WGKKLDAEAYDCNNVVEQELPCGGVLIYQSFAA--NEELAVSAGSPRSVFHCFENV 358

Hordeum chilense (taxid: 15565)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|Q42679|DCAM_CATRO S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1

 Score =  381 bits (979), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/364 (57%), Positives = 255/364 (70%), Gaps = 20/364 (5%)

Query: 10  ASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFD 69
           AS IGFEG+EKRLEI+F  +  F DP G GLRAL +SQ+D  L+ A+CTIV  LSN   D
Sbjct: 5   ASAIGFEGYEKRLEISFFESSFFADPDGKGLRALNKSQIDEILEPAECTIVDSLSNQYLD 64

Query: 70  SYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFPNYQ 129
           SYVLSESSLFV+P KII+KTCGTTKLL SIP ILKL++SLSL+V +VKY+RGSFIFP  Q
Sbjct: 65  SYVLSESSLFVYPYKIIIKTCGTTKLLLSIPAILKLAESLSLSVRNVKYTRGSFIFPGAQ 124

Query: 130 PSPHCCFSEEVSTLNEHFGY--LNAKAHVIGDPKFPNRNWHVYSAS--KERSFDGVVTLE 185
             PH  FSEEV  L+ +FG   L + A ++G+P  P + WHVYSAS   E+S D   TLE
Sbjct: 125 SFPHRSFSEEVELLDNYFGKLGLESNAFIMGNPDQPQK-WHVYSASVGSEQSSDPTYTLE 183

Query: 186 MCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGP 245
           MCMTGLDR+KA+VFYKS S    A+ MT  SGI +ILP   ICDFEFDPCGYSMN I+  
Sbjct: 184 MCMTGLDREKASVFYKSES--SSAALMTTRSGIRKILPDSEICDFEFDPCGYSMNSIEEA 241

Query: 246 AFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVA----VTCGSGT 301
           A ST+HVTPEDGFSYAS+EAAG+DL+      +++RVL  F P EFSVA    VTC S  
Sbjct: 242 AISTIHVTPEDGFSYASFEAAGYDLKAQNLGMMIERVLACFQPSEFSVAVHCDVTCKSLE 301

Query: 302 QWWSMEGADVEGYSSETAVKQELAGGGCVVYKTY-SVDPNARCAVSAPPKVPKHCWKEVA 360
           Q  S+E   ++ YS +  + +EL  GG ++YK +  +D     A  +P  + K CWKE  
Sbjct: 302 QICSLE---LKEYSLDEKINEELGLGGSIIYKKFLRID-----ACGSPRSILKCCWKEDE 353

Query: 361 AEEE 364
           +EEE
Sbjct: 354 SEEE 357

Catharanthus roseus (taxid: 4058)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|O04009|DCAM_TOBAC S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1

 Score =  362 bits (928), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 196/359 (54%), Positives = 250/359 (69%), Gaps = 13/359 (3%)

Query: 3   VDSSPPVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQ 62
           +DS+ PV S IGFEGFEKRLEI+F    +F DP+G GLR+L+++QLD  L  A+CTIV  
Sbjct: 1   MDSALPV-SAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDS 59

Query: 63  LSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGS 122
           LSN + DSYVLSESSLFV+  KII+KTCGTTKLL +IP ILKL+++LSL V  V+Y+RGS
Sbjct: 60  LSNDDVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPILKLAETLSLKVQDVRYTRGS 119

Query: 123 FIFPNYQPSPHCCFSEEVSTLNEHFGYLNA--KAHVIGDPKFPNRNWHVYSASKE--RSF 178
           FIFP  Q  PH  FSEEV+ L+ +FG L A  KA ++G P    + WHVYSAS    +S 
Sbjct: 120 FIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPD-KAQKWHVYSASAGPIQSN 178

Query: 179 DGVVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYS 238
           D V TLEMCMTGLDR+KA+VFYK+      A+ MT  SGI +ILP+  ICDFEF+PCGYS
Sbjct: 179 DPVYTLEMCMTGLDREKASVFYKTEG--SSAAHMTVRSGIRKILPNSEICDFEFEPCGYS 236

Query: 239 MNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCG 298
           MN I+G A ST+H+TPEDGFSYAS+EA G+D++ ++  PLV+RVL  F P EFS+A+   
Sbjct: 237 MNSIEGAALSTIHITPEDGFSYASFEAVGYDMKTMKLGPLVERVLACFEPDEFSIALHAD 296

Query: 299 SGTQWWS-MEGADVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVPKHCW 356
             T+    +   DV+GYS      +E   GG +VY+ ++  P       +P  V K CW
Sbjct: 297 VATKLLERVCSVDVKGYSLAEWSPEEFGKGGSIVYQKFTRTPFC----GSPKSVLKGCW 351

Nicotiana tabacum (taxid: 4097)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|Q9M4D8|DCAM_VICFA S-adenosylmethionine decarboxylase proenzyme OS=Vicia faba GN=SAMDC PE=2 SV=1

 Score =  361 bits (927), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 193/359 (53%), Positives = 249/359 (69%), Gaps = 15/359 (4%)

Query: 11  SPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDS 70
           S IGFEGFEKRLEI+FS   +F+DP G GLR+LT+SQLD  L  A+CTIVS L+N + DS
Sbjct: 4   SAIGFEGFEKRLEISFSDPGLFSDPQGRGLRSLTKSQLDEILAPAECTIVSSLANEDVDS 63

Query: 71  YVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFPNYQP 130
           YVLSESSLFV+  KII+KTCGTTKLL +IP ILKL++S+SL V +V+Y+RGSFIFP  Q 
Sbjct: 64  YVLSESSLFVYAYKIIIKTCGTTKLLLAIPPILKLAESISLDVRAVRYTRGSFIFPGAQS 123

Query: 131 SPHCCFSEEVSTLNEHFGYL--NAKAHVIGDPKFPNRNWHVYSASKERS--FDGVVTLEM 186
            PH  FSEEV+ L+  FG L   +KA+++G      +NWHVY AS +     D V TLEM
Sbjct: 124 FPHRHFSEEVAVLDGFFGKLGSGSKAYIMGGSD-EAQNWHVYCASADSVSPADSVYTLEM 182

Query: 187 CMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPA 246
           CMTGLDR+KA+VF+K  +  G A+EMT  SGI +ILP+  ICDF+F+PCGYSMN ++GPA
Sbjct: 183 CMTGLDREKASVFFKQQT--GSAAEMTVNSGIRKILPNSEICDFDFEPCGYSMNSVEGPA 240

Query: 247 FSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQWWSM 306
            ST+H+TPEDGFSYAS+E AG+DL+ +    +V RVL  F P EFSVAV   + ++ +  
Sbjct: 241 VSTIHITPEDGFSYASFETAGYDLKAMNLNEMVMRVLACFQPTEFSVAVHVDNASKSFE- 299

Query: 307 EGA--DVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVPKHCWKEVAAEE 363
           +G   DV+GY  +    Q L   G VVY+ +      + +    P+    CWK+   EE
Sbjct: 300 QGCLLDVKGYCCDEKSHQGLGMSGSVVYQKF-----VKASDCGSPRSTLKCWKDEDEEE 353

Vicia faba (taxid: 3906)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|Q9AXE3|DCAM_DAUCA S-adenosylmethionine decarboxylase proenzyme OS=Daucus carota GN=SAMDC PE=2 SV=1

 Score =  360 bits (924), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 191/351 (54%), Positives = 239/351 (68%), Gaps = 11/351 (3%)

Query: 11  SPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDS 70
           S IGFEGFEKRLEI+F     F DP G GLR L+++QLD FL  A+CTIV+ LSN   DS
Sbjct: 6   SAIGFEGFEKRLEISFFEPSFFADPEGKGLRVLSKNQLDEFLGPAECTIVASLSNEHVDS 65

Query: 71  YVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFPNYQP 130
           YVLSESSLFV+  KII+KTCGTTKLL SIP ILKL+DSLSL V SV+Y+RG FIFP  Q 
Sbjct: 66  YVLSESSLFVYAYKIIIKTCGTTKLLKSIPPILKLADSLSLTVRSVRYTRGCFIFPGAQS 125

Query: 131 SPHCCFSEEVSTLNEHFGYL--NAKAHVIGDPKFPNRNWHVYS--ASKERSFDGVVTLEM 186
            PH  FSEEVS L+ +FG L   +KA+++G      + WHVYS  A+  R+ D V T+EM
Sbjct: 126 YPHRSFSEEVSVLDNYFGKLGSGSKAYIMGGSD-KQQKWHVYSACAASTRTLDPVYTMEM 184

Query: 187 CMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPA 246
           CMT L+R KA+VFYK++S    A+ +T  SG+ +ILP+  ICDFEFDPCGYSMN ++GPA
Sbjct: 185 CMTSLNRDKASVFYKTNS--SSATSVTDNSGLRDILPNSRICDFEFDPCGYSMNAVEGPA 242

Query: 247 FSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQWW-S 305
            ST+H+TPEDGFSY+S+EA G+D + V    LV RVLN F P EFS+A+     ++    
Sbjct: 243 VSTIHITPEDGFSYSSFEAVGYDPKSVNLSDLVARVLNCFQPGEFSIALQADIASELLEK 302

Query: 306 MEGADVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVPKHCW 356
                V+GY  E    +EL   G +VY+ + V    RC   +P  V K CW
Sbjct: 303 TSSVHVKGYRVEEKTCEELGMDGSIVYQKF-VKTTERC--ESPRSVLKCCW 350

Daucus carota (taxid: 4039)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|O80402|DCAM_NICSY S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1

 Score =  360 bits (923), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/359 (54%), Positives = 249/359 (69%), Gaps = 13/359 (3%)

Query: 3   VDSSPPVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQ 62
           +D + PV S IGFEGFEKRLEI+F    +F DP+G GLR+L+++QLD  L  A+CTIV  
Sbjct: 1   MDMALPV-SAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDS 59

Query: 63  LSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGS 122
           LSN + DSYVLSESSLFV+  KII+KTCGTTKLL +IP ILKL+++LSL V  V+Y+RGS
Sbjct: 60  LSNDDVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPILKLAETLSLKVQDVRYTRGS 119

Query: 123 FIFPNYQPSPHCCFSEEVSTLNEHFGYLNA--KAHVIGDPKFPNRNWHVYSASKE--RSF 178
           FIFP  Q  PH  FSEEV+ L+ +FG L A  KA ++G P    + WHVYSAS    +S 
Sbjct: 120 FIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPD-KAQKWHVYSASAGPIQSN 178

Query: 179 DGVVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYS 238
           D V TLEMCMTGLDR+KA+VFYK+      A+ MT  SGI +ILP+  ICDFEF+PCGYS
Sbjct: 179 DPVYTLEMCMTGLDREKASVFYKTEG--SSAAHMTVRSGIRKILPNSEICDFEFEPCGYS 236

Query: 239 MNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCG 298
           MN I+G A ST+H+TPEDGFSYAS+EA G+D++ ++  PLV+RVL  F P EFS+A+   
Sbjct: 237 MNSIEGAALSTIHITPEDGFSYASFEAVGYDMKTMKLGPLVERVLACFEPDEFSIALHAD 296

Query: 299 SGTQWWS-MEGADVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVPKHCW 356
             T+    +   DV+GYS      +E   GG +VY+ ++  P       +P  V K CW
Sbjct: 297 VATKLLERVCSVDVKGYSLAEWSPEEFGKGGSIVYQKFTRTPFC----GSPKSVLKGCW 351

Nicotiana sylvestris (taxid: 4096)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|Q39676|DCAM1_DIACA S-adenosylmethionine decarboxylase proenzyme 1 OS=Dianthus caryophyllus GN=SAMDC1 PE=2 SV=1

 Score =  359 bits (921), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 201/365 (55%), Positives = 250/365 (68%), Gaps = 11/365 (3%)

Query: 4   DSSPPVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQL 63
           D++    S IGFEGFEKRLEI+F    IF DP G GLRAL+++QLD  L  A+CTIV  L
Sbjct: 21  DNNTMALSAIGFEGFEKRLEISFFEPGIFVDPEGKGLRALSKAQLDEILGPAECTIVDSL 80

Query: 64  SNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSF 123
           +N   DSYVLSESSLFV+  KII+KTCGTTKLL SI  IL L+D L L V SV+Y+RGSF
Sbjct: 81  ANESVDSYVLSESSLFVYSYKIIIKTCGTTKLLHSILPILTLADGLCLDVKSVRYTRGSF 140

Query: 124 IFPNYQPSPHCCFSEEVSTLNEHFGYL--NAKAHVIGDPKFPNRNWHVYSASKERSFDG- 180
           IFP  Q  PH  FSEEV+ L+++FG L   +KA V+G P  P + WHVYSA+ E S+D  
Sbjct: 141 IFPGAQSYPHRSFSEEVAVLDKYFGNLGTGSKAFVMGSPAKPQK-WHVYSATAEPSYDDP 199

Query: 181 VVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMN 240
           V TLEMCMTGLD+ KA+VF+KS S    A+ MT+ SGI +ILP   ICDF+F+PCGYSMN
Sbjct: 200 VYTLEMCMTGLDKGKASVFFKSES--ASAAVMTETSGIRKILPDSAICDFDFEPCGYSMN 257

Query: 241 GIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSG 300
            I+GPA ST+H+TPEDGFSYAS+EA G+DL++V    LV+RVLN F PREFS+AV+  + 
Sbjct: 258 AIEGPAVSTIHITPEDGFSYASFEAVGYDLKIVDVNQLVERVLNCFQPREFSIAVSVDTA 317

Query: 301 TQWWSMEGA-DVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVPKHCWKEV 359
            +      A +V GY  E    + L  GG V+Y+ +         VS   K PK C KE 
Sbjct: 318 DKVLEQYCAVNVAGYCREEGGVEGLGVGGSVLYQKF----GKVATVSGLNKSPKCCRKEE 373

Query: 360 AAEEE 364
             +E+
Sbjct: 374 ENDEK 378

Dianthus caryophyllus (taxid: 3570)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
147774304	476	hypothetical protein VITISV_017165 [Viti	0.952	0.752	0.659	1e-132
449453942	434	PREDICTED: S-adenosylmethionine decarbox	0.973	0.843	0.653	1e-131
449511550	434	PREDICTED: S-adenosylmethionine decarbox	0.973	0.843	0.653	1e-131
359484814	428	PREDICTED: LOW QUALITY PROTEIN: S-adenos	0.925	0.813	0.668	1e-129
224142335	348	predicted protein [Populus trichocarpa]	0.867	0.936	0.697	1e-129
222623223	466	hypothetical protein OsJ_07492 [Oryza sa	0.960	0.774	0.582	1e-113
115447249	395	Os02g0611200 [Oryza sativa Japonica Grou	0.960	0.913	0.582	1e-113
257220651	397	S-adenosylmethionine decarboxylase 3 [So	0.944	0.894	0.578	1e-113
242073608	396	hypothetical protein SORBIDRAFT_06g02154	0.944	0.896	0.578	1e-113
125540256	646	hypothetical protein OsI_08032 [Oryza sa	0.960	0.558	0.580	1e-112

>gi|147774304|emb|CAN76946.1| hypothetical protein VITISV_017165 [Vitis vinifera]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/370 (65%), Positives = 286/370 (77%), Gaps = 12/370 (3%)

Query: 4   DSSPPVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQL 63
           +  PP  SPIGFEGFEKRL+JTFS APIF DP GLGLRALTRSQLDS LD A CTIV+ L
Sbjct: 9   NGDPPPPSPIGFEGFEKRLQJTFSEAPIFIDPQGLGLRALTRSQLDSILDAACCTIVNHL 68

Query: 64  SNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSF 123
           SN+E DSYVLSESSLFV+P+KIILKTCGTTKLL +IP IL+L++SL L V SVKYSRGSF
Sbjct: 69  SNSELDSYVLSESSLFVYPNKIILKTCGTTKLLLAIPPILRLAESLQLTVVSVKYSRGSF 128

Query: 124 IFPNYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKE-------R 176
           IFPN QP+PH  FSEEV+ LN  FG L+ KA+VIGDP  PNRNWH+YSASKE       R
Sbjct: 129 IFPNAQPAPHRSFSEEVAALNVFFGDLSPKAYVIGDPAIPNRNWHIYSASKEVRRSPLVR 188

Query: 177 SFDGVVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCG 236
               V+T+EMCMTGLDR KA+VF+K S     A EMTK+SGIS+++P+HVICDFEFDPCG
Sbjct: 189 EEVAVITVEMCMTGLDRDKASVFFKKSGEEDSAKEMTKLSGISDVMPTHVICDFEFDPCG 248

Query: 237 YSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVT 296
           YSMNG++G A STVHVTPE+GFSYASYEA GF    V  + L+KRVL  F P +FSVAVT
Sbjct: 249 YSMNGVEGGALSTVHVTPEEGFSYASYEAMGFXPGSVGMKTLMKRVLACFGPSQFSVAVT 308

Query: 297 CGSG-TQWWSMEG-ADVEGYSSETAVKQELAGG-GCVVYKTYSVDPNARCAVSAPPKVPK 353
           C +G  + W+MEG  +VEGY+ +  VKQEL+ G GCVVY TY  +   RCAV++P  V  
Sbjct: 309 CPAGDDEXWAMEGCGEVEGYACQNVVKQELSSGEGCVVYVTYEAE-EKRCAVNSPKSV-L 366

Query: 354 HCWKEVAAEE 363
            CWK+V  EE
Sbjct: 367 QCWKDVEVEE 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453942|ref|XP_004144715.1| PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Cucumis sativus]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/378 (65%), Positives = 292/378 (77%), Gaps = 12/378 (3%)

Query: 7   PPVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNT 66
           PP  SPIGFEGFEKRLEITFS  PIF DP GLGLRALTR+QLDS L+ A CTIVS LSN+
Sbjct: 61  PP--SPIGFEGFEKRLEITFSEPPIFQDPEGLGLRALTRTQLDSILEPACCTIVSHLSNS 118

Query: 67  EFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFP 126
           +FDSYVLSESSLFV+P  IILKTCGTTKLL SIP IL+L+DSLSLA  SVKYSRG+FIFP
Sbjct: 119 DFDSYVLSESSLFVYPRAIILKTCGTTKLLLSIPIILQLADSLSLAAVSVKYSRGTFIFP 178

Query: 127 NYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDG---VVT 183
           +YQP+PH  FSEEV+ LN +FG+ +++A+V+GDP  PNRNWH+YSA K  S      +V+
Sbjct: 179 DYQPAPHRSFSEEVTALNVYFGHFHSEAYVLGDPAVPNRNWHIYSAVKTHSNVNRMDLVS 238

Query: 184 LEMCMTGLDRKKAAVFYKSSSGPGGASE-MTKMSGISEILPSHVICDFEFDPCGYSMNGI 242
           LE+CMTGL+R+KAAVF+K   G   ++E MTKMS ISEI+P+H+ICDFEFDPCGYSMNGI
Sbjct: 239 LEICMTGLNREKAAVFFKKPGGEDSSAEKMTKMSKISEIIPNHIICDFEFDPCGYSMNGI 298

Query: 243 DGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSG-- 300
           +G A+STVHVTPEDGFSYASYEA GFD   + F  LV RVL  F+P EFS+A TCG G  
Sbjct: 299 EGAAYSTVHVTPEDGFSYASYEAMGFDTMELPFSELVNRVLRCFSPAEFSIATTCGDGDN 358

Query: 301 TQWWSMEGADVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAP--PKVPKHCWKE 358
           ++ W+++ ADVEGY+ E  VKQE+ GG  VVY+TYSVD   RC V AP    +   CWKE
Sbjct: 359 SRSWAVDHADVEGYTCENVVKQEMVGGELVVYRTYSVD-RRRC-VEAPACKTLLMQCWKE 416

Query: 359 VAAEEESSMVVCRFVSPA 376
            AA      VV R +S A
Sbjct: 417 AAANAAEEEVVLRRLSSA 434

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511550|ref|XP_004163988.1| PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Cucumis sativus]

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/378 (65%), Positives = 291/378 (76%), Gaps = 12/378 (3%)

Query: 7   PPVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNT 66
           PP  SPIGFEGFEKRLEITFS  PIF DP GLGLRALTR+QLDS L+ A CTIVS LSN+
Sbjct: 61  PP--SPIGFEGFEKRLEITFSEPPIFQDPEGLGLRALTRTQLDSILEPACCTIVSHLSNS 118

Query: 67  EFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFP 126
           +FDSYVLSESSLFV+P  IILKTCGTTKLL SIP IL+L+DSLSLA  SVKYSRG+FIFP
Sbjct: 119 DFDSYVLSESSLFVYPRAIILKTCGTTKLLLSIPIILQLADSLSLAAVSVKYSRGTFIFP 178

Query: 127 NYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDG---VVT 183
           +YQP+PH  FSEEV+ LN +FG+ +++A+V+GDP  PNRNWH+YSA K  S      +V+
Sbjct: 179 DYQPAPHRSFSEEVTALNVYFGHFHSEAYVLGDPAVPNRNWHIYSAVKSHSNVNRMDLVS 238

Query: 184 LEMCMTGLDRKKAAVFYKSSSGPGGASE-MTKMSGISEILPSHVICDFEFDPCGYSMNGI 242
           LE+CMTGL+R+KAAVF+K   G   ++E MTKMS ISEI+P+H+ICDFEFDPCGYSMNGI
Sbjct: 239 LEICMTGLNREKAAVFFKKPGGEDSSAEKMTKMSKISEIIPNHIICDFEFDPCGYSMNGI 298

Query: 243 DGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSG-- 300
           +G A+STVHVTPEDGFSYASYEA GFD   + F  LV RVL  F+P EFS+A TCG G  
Sbjct: 299 EGAAYSTVHVTPEDGFSYASYEAMGFDTMELPFSELVNRVLRCFSPAEFSIATTCGDGDS 358

Query: 301 TQWWSMEGADVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAP--PKVPKHCWKE 358
           ++ W+++ ADVEGY+ E  VKQE+ GG  VVY+TYSVD   RC V AP        CWKE
Sbjct: 359 SRSWAVDHADVEGYTCENVVKQEMVGGELVVYRTYSVD-RRRC-VEAPACKTFLMQCWKE 416

Query: 359 VAAEEESSMVVCRFVSPA 376
            AA      VV R +S A
Sbjct: 417 AAANAAEEEVVLRRLSSA 434

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484814|ref|XP_002272179.2| PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine decarboxylase proenzyme-like [Vitis vinifera]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/362 (66%), Positives = 281/362 (77%), Gaps = 14/362 (3%)

Query: 7   PPVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNT 66
           PP  SPIGFEGFEKRL+ITFS APIF DP GLGLRALTRSQLD  LD A CTIV+ LSN+
Sbjct: 55  PP--SPIGFEGFEKRLQITFSEAPIFIDPRGLGLRALTRSQLDLILDAACCTIVNHLSNS 112

Query: 67  EFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFP 126
           E DSYVLSESSLFV+P+KIILKTCGTTKLL SIP IL+L++SL L V SVKYSRGSFIFP
Sbjct: 113 ELDSYVLSESSLFVYPNKIILKTCGTTKLLLSIPPILQLAESLQLTVVSVKYSRGSFIFP 172

Query: 127 NYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKE-------RSFD 179
           N QP+PH  FSEEV+ LN  FG L+ KA+VIGDP  PNRNWH+YSASKE       R   
Sbjct: 173 NAQPAPHRSFSEEVAALNVFFGDLSPKAYVIGDPAIPNRNWHIYSASKEVRRSPLVREEV 232

Query: 180 GVVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSM 239
            V+T+EMCMTGLDR KA+VF+K S     A EMTK+SGIS+++P+HVICDFEFDPCGYSM
Sbjct: 233 AVITVEMCMTGLDRDKASVFFKKSGEEDSAKEMTKLSGISDVMPTHVICDFEFDPCGYSM 292

Query: 240 NGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGS 299
           NG++G A STVHVTPE+GFSYASYEA GFD   V  + L+KRVL  F P +FSVAVTC +
Sbjct: 293 NGVEGGALSTVHVTPEEGFSYASYEAMGFDPGSVGMKTLMKRVLACFGPSQFSVAVTCPA 352

Query: 300 G-TQWWSMEG-ADVEGYSSETAVKQELAGG-GCVVYKTYSVDPNARCAVSAPPKVPKHCW 356
           G  + W+MEG  +VEGY+ +  VKQEL+ G GCVVY TY  +    CAV++P  V   CW
Sbjct: 353 GDDERWAMEGCGEVEGYACQNVVKQELSSGEGCVVYVTYEAEEKG-CAVNSPKSV-LQCW 410

Query: 357 KE 358
           K+
Sbjct: 411 KD 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142335|ref|XP_002324514.1| predicted protein [Populus trichocarpa] gi|222865948|gb|EEF03079.1| predicted protein [Populus trichocarpa]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 237/340 (69%), Positives = 269/340 (79%), Gaps = 14/340 (4%)

Query: 7   PPVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNT 66
           PP  SPIGFEGFEKRLEITFS    F DP+GLGLRALTRSQ+DS L+ A CTIVSQLSNT
Sbjct: 1   PP--SPIGFEGFEKRLEITFSEPSFFNDPNGLGLRALTRSQIDSILEPACCTIVSQLSNT 58

Query: 67  EFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFP 126
           EFDSYVLSESSLF++P KIILKTCGTTKLL S+  ILKL++SLSL V  V YSRGSFIFP
Sbjct: 59  EFDSYVLSESSLFIYPLKIILKTCGTTKLLLSVHPILKLAESLSLDVCHVTYSRGSFIFP 118

Query: 127 NYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKE-------RSFD 179
           +YQP+PH  F+EEV+ LN +FG LN+ A+VIG P   NRNWH+Y ASK+       +   
Sbjct: 119 DYQPAPHRSFAEEVTALNGYFGNLNSNAYVIGHPTSANRNWHIYVASKDSKSLPLSKDHT 178

Query: 180 GVVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSM 239
             VTLEMCMTGLDR KAAVFYK S+    A+EMTKMSGI+EI+PSH+ICDF+FDPCGYSM
Sbjct: 179 SAVTLEMCMTGLDRMKAAVFYKKSADY-SAAEMTKMSGINEIMPSHMICDFDFDPCGYSM 237

Query: 240 NGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTC-- 297
           NGIDG A STVHVTPEDGFSYASYEA GFD   VR   LV+RVL  F PR+FSVAVTC  
Sbjct: 238 NGIDGTALSTVHVTPEDGFSYASYEATGFDCGEVRLRGLVQRVLKCFGPRDFSVAVTCHG 297

Query: 298 --GSGTQWWSMEGADVEGYSSETAVKQELAGGGCVVYKTY 335
             G G QWW++E ADVEGY  ++ V+QEL GGGC+VY TY
Sbjct: 298 GGGIGVQWWAIECADVEGYLCDSVVRQELPGGGCLVYMTY 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222623223|gb|EEE57355.1| hypothetical protein OsJ_07492 [Oryza sativa Japonica Group]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/374 (58%), Positives = 274/374 (73%), Gaps = 13/374 (3%)

Query: 1   MAVDSSPPVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIV 60
           ++V  SPPV S IGFEG+EKRLEITFS AP+F DP+G GLRAL+R+Q+DS LDLA+CTIV
Sbjct: 75  LSVADSPPV-SAIGFEGYEKRLEITFSEAPVFADPNGRGLRALSRAQIDSVLDLARCTIV 133

Query: 61  SQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSR 120
           S+LSN  FDSYVLSESSLFV+P KI++KTCGTTKLL +IP+IL+L++ LSL + +VKYSR
Sbjct: 134 SELSNEVFDSYVLSESSLFVYPYKIVIKTCGTTKLLLAIPRILELAEELSLPLEAVKYSR 193

Query: 121 GSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNA--KAHVIGDPKFPNRNWHVYSASKERSF 178
           G+FIFP  QPSPH  FSEEV+ LN +FG L +   A+VIGDP  P + WHVY A++    
Sbjct: 194 GTFIFPEAQPSPHKNFSEEVAVLNRYFGGLKSGGNAYVIGDPAKPGQKWHVYYATQHPE- 252

Query: 179 DGVVTLEMCMTGLDRKKAAVFYKSSSGPGG--ASEMTKMSGISEILPSHVICDFEFDPCG 236
             VVTLEMCMTGLD+KKA+VF+K+S+      A EMTK+SGIS+I+P   +CDF+F+PCG
Sbjct: 253 QPVVTLEMCMTGLDKKKASVFFKTSADGHTTYAKEMTKLSGISDIIPEMEVCDFDFEPCG 312

Query: 237 YSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVT 296
           YSMN I GPAFST+HVTPEDGFSYASYE  GF+   + +  LVKRVL  F P EFSVAVT
Sbjct: 313 YSMNAIHGPAFSTIHVTPEDGFSYASYEVMGFNPASLAYGDLVKRVLRCFGPLEFSVAVT 372

Query: 297 CGSGTQW---WSMEGADVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVPK 353
              G      W+ +G DV  YS    V+QEL  GG ++Y++++    A  A  +P  V  
Sbjct: 373 IFGGRNHAGTWA-KGLDVGAYSCSNMVEQELPSGGLLIYQSFTA--TAEIATGSPRSV-L 428

Query: 354 HCWKEVAAEEESSM 367
           HC+ +   E+   M
Sbjct: 429 HCFADENTEKAGKM 442

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115447249|ref|NP_001047404.1| Os02g0611200 [Oryza sativa Japonica Group] gi|6646868|emb|CAB64600.1| S-adenosylmethionine decarboxylase 2 [Oryza sativa Japonica Group] gi|47497185|dbj|BAD19232.1| S-adenosylmethionine decarboxylase 2 [Oryza sativa Japonica Group] gi|47497608|dbj|BAD19677.1| S-adenosylmethionine decarboxylase 2 [Oryza sativa Japonica Group] gi|113536935|dbj|BAF09318.1| Os02g0611200 [Oryza sativa Japonica Group] gi|385718868|gb|AFI71861.1| S-adenosylmethionine decarboxylase 2 [Oryza sativa]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/374 (58%), Positives = 274/374 (73%), Gaps = 13/374 (3%)

Query: 1   MAVDSSPPVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIV 60
           ++V  SPPV S IGFEG+EKRLEITFS AP+F DP+G GLRAL+R+Q+DS LDLA+CTIV
Sbjct: 4   LSVADSPPV-SAIGFEGYEKRLEITFSEAPVFADPNGRGLRALSRAQIDSVLDLARCTIV 62

Query: 61  SQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSR 120
           S+LSN  FDSYVLSESSLFV+P KI++KTCGTTKLL +IP+IL+L++ LSL + +VKYSR
Sbjct: 63  SELSNEVFDSYVLSESSLFVYPYKIVIKTCGTTKLLLAIPRILELAEELSLPLEAVKYSR 122

Query: 121 GSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNA--KAHVIGDPKFPNRNWHVYSASKERSF 178
           G+FIFP  QPSPH  FSEEV+ LN +FG L +   A+VIGDP  P + WHVY A++    
Sbjct: 123 GTFIFPEAQPSPHKNFSEEVAVLNRYFGGLKSGGNAYVIGDPAKPGQKWHVYYATQHPE- 181

Query: 179 DGVVTLEMCMTGLDRKKAAVFYKSSSGPGG--ASEMTKMSGISEILPSHVICDFEFDPCG 236
             VVTLEMCMTGLD+KKA+VF+K+S+      A EMTK+SGIS+I+P   +CDF+F+PCG
Sbjct: 182 QPVVTLEMCMTGLDKKKASVFFKTSADGHTTYAKEMTKLSGISDIIPEMEVCDFDFEPCG 241

Query: 237 YSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVT 296
           YSMN I GPAFST+HVTPEDGFSYASYE  GF+   + +  LVKRVL  F P EFSVAVT
Sbjct: 242 YSMNAIHGPAFSTIHVTPEDGFSYASYEVMGFNPASLAYGDLVKRVLRCFGPLEFSVAVT 301

Query: 297 CGSGTQW---WSMEGADVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVPK 353
              G      W+ +G DV  YS    V+QEL  GG ++Y++++    A  A  +P  V  
Sbjct: 302 IFGGRNHAGTWA-KGLDVGAYSCSNMVEQELPSGGLLIYQSFTA--TAEIATGSPRSV-L 357

Query: 354 HCWKEVAAEEESSM 367
           HC+ +   E+   M
Sbjct: 358 HCFADENTEKAGKM 371

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|257220651|gb|ACV52081.1| S-adenosylmethionine decarboxylase 3 [Sorghum bicolor] gi|257220654|gb|ACV52083.1| S-adenosylmethionine decarboxylase 3 [Sorghum bicolor]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/370 (57%), Positives = 270/370 (72%), Gaps = 15/370 (4%)

Query: 1   MAVDSSPPVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIV 60
           ++   +PPV S IGFEG+EKRLEITFS AP+F DP G GLRAL+R+Q+DS LDLA+CTIV
Sbjct: 4   LSAADAPPV-SAIGFEGYEKRLEITFSEAPVFADPHGRGLRALSRAQIDSVLDLARCTIV 62

Query: 61  SQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSR 120
           S+LSN +FDSYVLSESSLF++P KI++KTCGTTKLL +IP+IL+L++ LS+ +++VKYSR
Sbjct: 63  SELSNKDFDSYVLSESSLFIYPLKIVIKTCGTTKLLLTIPRILELAEELSMPLAAVKYSR 122

Query: 121 GSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNA--KAHVIGDPKFPNRNWHVYSASKERSF 178
           G+FIFP  QP+PH  FSEEV+ LN +FG L +   A+VIGDP  P + WH+Y A+ E   
Sbjct: 123 GTFIFPGAQPAPHRSFSEEVAALNRYFGGLKSGGNAYVIGDPARPGQKWHIYYAT-EYPE 181

Query: 179 DGVVTLEMCMTGLDRKKAAVFYKSSSGPGG--ASEMTKMSGISEILPSHVICDFEFDPCG 236
             VV LEMCMTGLD+KKA+VF+K+++      A EMTK+SGISEI+P   ICDF+F+PCG
Sbjct: 182 QPVVNLEMCMTGLDKKKASVFFKTNADGNTTCAEEMTKLSGISEIIPEMEICDFDFEPCG 241

Query: 237 YSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVT 296
           YSMN I G AFST+HVTPEDGFSYASYE  GFD   + +  LVKRVL  F P EFSVAVT
Sbjct: 242 YSMNAIHGSAFSTIHVTPEDGFSYASYEVMGFDATALSYGDLVKRVLRCFGPLEFSVAVT 301

Query: 297 C----GSGTQWWSMEGADVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVP 352
                G    W    GA+V  Y     V+QEL GGG ++Y+++     A  AV+  PK  
Sbjct: 302 IFGGRGQAGTWGKQLGAEV--YDCNNMVEQELPGGGLLIYQSFCA---AEDAVATSPKSV 356

Query: 353 KHCWKEVAAE 362
            HC++ V  E
Sbjct: 357 LHCFEGVNME 366

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242073608|ref|XP_002446740.1| hypothetical protein SORBIDRAFT_06g021540 [Sorghum bicolor] gi|241937923|gb|EES11068.1| hypothetical protein SORBIDRAFT_06g021540 [Sorghum bicolor]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/370 (57%), Positives = 270/370 (72%), Gaps = 15/370 (4%)

Query: 1   MAVDSSPPVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIV 60
           ++   +PPV S IGFEG+EKRLEITFS AP+F DP G GLRAL+R+Q+DS LDLA+CTIV
Sbjct: 4   LSAADAPPV-SAIGFEGYEKRLEITFSEAPVFADPHGRGLRALSRAQIDSVLDLARCTIV 62

Query: 61  SQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSR 120
           S+LSN +FDSYVLSESSLF++P KI++KTCGTTKLL +IP+IL+L++ LS+ +++VKYSR
Sbjct: 63  SELSNKDFDSYVLSESSLFIYPLKIVIKTCGTTKLLLTIPRILELAEELSMPLAAVKYSR 122

Query: 121 GSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNA--KAHVIGDPKFPNRNWHVYSASKERSF 178
           G+FIFP  QP+PH  FSEEV+ LN +FG L +   A+VIGDP  P + WH+Y A+ E   
Sbjct: 123 GTFIFPGAQPAPHRSFSEEVAALNRYFGGLKSGGNAYVIGDPARPGQKWHIYYAT-EYPE 181

Query: 179 DGVVTLEMCMTGLDRKKAAVFYKSSSGPGG--ASEMTKMSGISEILPSHVICDFEFDPCG 236
             VV LEMCMTGLD+KKA+VF+K+++      A EMTK+SGISEI+P   ICDF+F+PCG
Sbjct: 182 QPVVNLEMCMTGLDKKKASVFFKTNADGNTTCAKEMTKLSGISEIIPEMEICDFDFEPCG 241

Query: 237 YSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVT 296
           YSMN I G AFST+HVTPEDGFSYASYE  GFD   + +  LVKRVL  F P EFSVAVT
Sbjct: 242 YSMNAIHGSAFSTIHVTPEDGFSYASYEVMGFDATALSYGDLVKRVLRCFGPLEFSVAVT 301

Query: 297 C----GSGTQWWSMEGADVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVP 352
                G    W    GA+V  Y     V+QEL GGG ++Y+++     A  AV+  PK  
Sbjct: 302 IFGGRGQAGTWGKQLGAEV--YDCNNMVEQELPGGGLLIYQSFCA---AEDAVATSPKSV 356

Query: 353 KHCWKEVAAE 362
            HC++ V  E
Sbjct: 357 LHCFEGVNME 366

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125540256|gb|EAY86651.1| hypothetical protein OsI_08032 [Oryza sativa Indica Group]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/374 (58%), Positives = 273/374 (72%), Gaps = 13/374 (3%)

Query: 1   MAVDSSPPVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIV 60
           ++V  SPPV S IGFEG+EKRLEITFS AP+F DP+G GLRAL+R+Q+DS LDLA+CTIV
Sbjct: 75  LSVADSPPV-SAIGFEGYEKRLEITFSEAPVFADPNGRGLRALSRAQIDSVLDLARCTIV 133

Query: 61  SQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSR 120
           S+LSN  FDSYVLSESSLFV+P KI++KTCGTTKLL +IP+IL+L++ LSL + +VKYSR
Sbjct: 134 SELSNEVFDSYVLSESSLFVYPYKIVIKTCGTTKLLLAIPRILELAEELSLPLEAVKYSR 193

Query: 121 GSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNA--KAHVIGDPKFPNRNWHVYSASKERSF 178
           G+FIFP  QPSPH  FSEEV+ LN +F  L +   A+VIGDP  P + WHVY A++    
Sbjct: 194 GTFIFPEAQPSPHKNFSEEVAVLNRYFSGLKSGGNAYVIGDPAKPGQKWHVYYATQHPE- 252

Query: 179 DGVVTLEMCMTGLDRKKAAVFYKSSSGPGG--ASEMTKMSGISEILPSHVICDFEFDPCG 236
             VVTLEMCMTGLD+KKA+VF+K+S+      A EMTK+SGIS+I+P   +CDF+F+PCG
Sbjct: 253 QPVVTLEMCMTGLDKKKASVFFKTSADGHTTCAKEMTKLSGISDIIPEMEVCDFDFEPCG 312

Query: 237 YSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVT 296
           YSMN I GPAFST+HVTPEDGFSYASYE  GF+   + +  LVKRVL  F P EFSVAVT
Sbjct: 313 YSMNAIHGPAFSTIHVTPEDGFSYASYEVMGFNPASLAYGDLVKRVLRCFGPSEFSVAVT 372

Query: 297 CGSGTQW---WSMEGADVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVPK 353
              G      W+ +G DV  YS    V+QEL  GG ++Y++++    A  A  +P  V  
Sbjct: 373 IFGGRNHAGTWA-KGLDVGAYSCSNMVEQELPSGGLLIYQSFTA--TAEIATGSPRSV-L 428

Query: 354 HCWKEVAAEEESSM 367
           HC+ +   E+   M
Sbjct: 429 HCFADENTEKAGKM 442

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
TAIR|locus:2094473	349	AT3G25570 [Arabidopsis thalian	0.859	0.925	0.566	6.9e-86
TAIR|locus:2076834	366	SAMDC "S-adenosylmethionine de	0.856	0.879	0.536	5.6e-84
TAIR|locus:2146132	362	AT5G15950 [Arabidopsis thalian	0.856	0.889	0.510	9.7e-80
TAIR|locus:2144985	347	BUD2 "BUSHY AND DWARF 2" [Arab	0.851	0.922	0.423	3.8e-62
DICTYBASE|DDB_G0275567	379	amd1 "S-adenosylmethionine dec	0.829	0.823	0.365	1.1e-46
WB|WBGene00004875	368	smd-1 [Caenorhabditis elegans	0.734	0.75	0.366	4.3e-38
FB|FBgn0019932	347	SamDC "S-adenosylmethionine de	0.763	0.827	0.355	8.9e-38
UNIPROTKB|Q5F484	341	AMD1 "S-adenosylmethionine dec	0.710	0.782	0.373	3.9e-37
POMBASE|SPBP4H10.05c	378	spe2 "S-adenosylmethionine dec	0.547	0.544	0.379	5.1e-37
UNIPROTKB|P50243	334	AMD1 "S-adenosylmethionine dec	0.707	0.796	0.364	4.4e-36

TAIR|locus:2094473 AT3G25570 [Arabidopsis thaliana (taxid:3702)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 188/332 (56%), Positives = 223/332 (67%)

Query:    11 SPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDS 70
             S  GFEGFEKRLEI+F     F DP G  LR+LT+SQLD  L  A+CTIVS L+N+  DS
Sbjct:     4 SATGFEGFEKRLEISFFETTDFLDPQGKSLRSLTKSQLDEILTPAECTIVSSLTNSFVDS 63

Query:    71 YVLSESSLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXXXXXXXXXYSRGSFIFPNYQP 130
             YVLSESSLFV+P KII+KTCGTTKLL SIP I               Y+RGSFIFP  Q 
Sbjct:    64 YVLSESSLFVYPYKIIIKTCGTTKLLLSIPHILRLADSLCLTVKSVRYTRGSFIFPGAQS 123

Query:   131 SPHCCFSEEVSTLNEHFGYLNA--KAHVIGDPKFPNRNWHVYSASK-ERSF--DG-VVTL 184
              PH  FSEEV+ L+++FG LNA  KA V+G      + WHVYSAS  E S   D  V TL
Sbjct:   124 YPHRSFSEEVALLDDYFGKLNAGSKAFVMGGSDNNPQRWHVYSASSTEESAVCDKPVYTL 183

Query:   185 EMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDG 244
             EMCMTGLD  KA+VF+K++S    ASEMT  SGI  ILP   ICDF F+PCGYSMN I+G
Sbjct:   184 EMCMTGLDNIKASVFFKTNSV--SASEMTISSGIRNILPGSEICDFNFEPCGYSMNSIEG 241

Query:   245 PAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQWW 304
              A ST+HVTPEDGFSYAS+E  G+DL+ + F+ LV RVL  F P EFSVAV    GT+  
Sbjct:   242 DAVSTIHVTPEDGFSYASFETVGYDLKALNFKELVDRVLVCFGPEEFSVAVHANLGTEVL 301

Query:   305 SMEG-ADVEGYSSETAVKQELAGGGCVVYKTY 335
             + +  ADV GY S+    +EL  GG V+Y+ +
Sbjct:   302 ASDCVADVNGYFSQERELEELGLGGSVLYQRF 333

GO:0004014 "adenosylmethionine decarboxylase activity" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0006597 "spermine biosynthetic process" evidence=IEA

GO:0008295 "spermidine biosynthetic process" evidence=IEA

TAIR|locus:2076834 SAMDC "S-adenosylmethionine decarboxylase" [Arabidopsis thaliana (taxid:3702)]

 Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
 Identities = 178/332 (53%), Positives = 217/332 (65%)

Query:    11 SPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDS 70
             S IGFEG+EKRLE+TF    IF D  GLGLRALT+SQLD  L  A CTIVS LSN + DS
Sbjct:     4 SAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQLDS 63

Query:    71 YVLSESSLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXXXXXXXXXYSRGSFIFPNYQP 130
             YVLSESS FV+P K+I+KTCGTTKLL SIP +               Y+RGSF+ P  QP
Sbjct:    64 YVLSESSFFVYPYKVIIKTCGTTKLLLSIPPLLKLAGELSLSVKSVKYTRGSFLCPGGQP 123

Query:   131 SPHCCFSEEVSTLNEHFGYL--NAKAHVIGDPKFPNRNWHVYSASKERSFD---GVVTLE 185
              PH  FSEEVS L+ HF  L  N+ A+++G+     + WHVY+AS + S +    V TLE
Sbjct:   124 FPHRSFSEEVSVLDGHFTQLGLNSVAYLMGNDD-ETKKWHVYAASAQDSSNCNNNVYTLE 182

Query:   186 MCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGP 245
             MCMTGLDR+KAAVFYK  +   G+  MT  SGI +ILP   ICDFEF+PCGYSMN I+G 
Sbjct:   183 MCMTGLDREKAAVFYKDEADKTGS--MTDNSGIRKILPKSEICDFEFEPCGYSMNSIEGD 240

Query:   246 AFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQWWS 305
             A ST+HVTPEDGFSYAS+EA G+D   +    LV RVL+ F P++FSVAV    G   + 
Sbjct:   241 AISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVGANSYK 300

Query:   306 ME-GADVEGYSSETAVKQELAG-GGCVVYKTY 335
              E   D+E Y       + L    G V+Y+T+
Sbjct:   301 PEITVDLEDYGCRERTFESLGEESGTVMYQTF 332

GO:0004014 "adenosylmethionine decarboxylase activity" evidence=IEA;ISS;IDA

GO:0006597 "spermine biosynthetic process" evidence=IEA

GO:0008295 "spermidine biosynthetic process" evidence=IEA

GO:0006596 "polyamine biosynthetic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0016458 "gene silencing" evidence=IMP

GO:0019079 "viral genome replication" evidence=IMP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2146132 AT5G15950 [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 169/331 (51%), Positives = 216/331 (65%)

Query:    11 SPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDS 70
             S IGFEG+EKRLE+TF    +F D  G GLRAL +SQ+D  L  A+CTIVS LSN + DS
Sbjct:     4 SAIGFEGYEKRLEVTFFEPGLFLDTQGKGLRALAKSQIDEILQPAECTIVSSLSNDQLDS 63

Query:    71 YVLSESSLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXXXXXXXXXYSRGSFIFPNYQP 130
             YVLSESSLF+FP KI++KTCGTTKLL SI  +               Y+RGSF+ P  QP
Sbjct:    64 YVLSESSLFIFPYKIVIKTCGTTKLLLSIEPLLRLAGELSLDVKAVRYTRGSFLCPGGQP 123

Query:   131 SPHCCFSEEVSTLNEHFGYL--NAKAHVIGDPKFPNRNWHVYSASKERSFD--GVVTLEM 186
              PH  FSEEVS L+ HF  L  ++ A+++G+     + WHVYSAS   S +   V TLEM
Sbjct:   124 FPHRNFSEEVSVLDGHFAKLGLSSVAYLMGNDD-ETKKWHVYSASSANSNNKNNVYTLEM 182

Query:   187 CMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPA 246
             CMTGLD+ KA+VFYK+ S   G+  MT  SGI +ILP   ICDFEF+PCGYSMN I+G A
Sbjct:   183 CMTGLDKDKASVFYKNESSSAGS--MTDNSGIRKILPQSQICDFEFEPCGYSMNSIEGDA 240

Query:   247 FSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAV-TCGSGTQWWS 305
              ST+HVTPEDGFSYAS+EA G+D   +    LV +VL  F P++FSVAV +  +   + S
Sbjct:   241 ISTIHVTPEDGFSYASFEAVGYDFTTMDLSHLVSKVLTCFKPKQFSVAVHSTVAQKSYDS 300

Query:   306 MEGADVEGYSSETAVKQELAGG-GCVVYKTY 335
                 D++ Y  + +  + L    G V+Y+ +
Sbjct:   301 GLSVDLDDYGCKESTMESLGEERGTVMYQRF 331

GO:0004014 "adenosylmethionine decarboxylase activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006597 "spermine biosynthetic process" evidence=IEA

GO:0008295 "spermidine biosynthetic process" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2144985 BUD2 "BUSHY AND DWARF 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 145/342 (42%), Positives = 198/342 (57%)

Query:    14 GFEGFEKRLEITF--SPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSY 71
             GFEGFEKRLE+ F     PI  +P  +GLR +    LD  L+  +CT+VS ++N  FD+Y
Sbjct:     5 GFEGFEKRLELRFFDDDKPITKNP--MGLRLIDFESLDQVLNEVQCTVVSAVANRSFDAY 62

Query:    72 VLSESSLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXXXXXXXXXYSRGSFIFPNYQPS 131
             VLSESSLFV+P+KII+KTCGTT+LL SI  +               YSRGSFIFP  QP 
Sbjct:    63 VLSESSLFVYPTKIIIKTCGTTQLLKSIRPLIHLARNLGLTLRACRYSRGSFIFPKAQPF 122

Query:   132 PHCCFSEEVSTLNEHF--GYLNAKAHVIGDPKFPNRNWHVYSASKE-RSFDGVVTLEMCM 188
             P+  F +EV  + E         KA V+     P+R WHV++AS +  S + VV +E+CM
Sbjct:   123 PYTSFKDEVIVVEESLPKSLCYRKASVMTPSNNPSRAWHVFTASADVESDEHVVVVEVCM 182

Query:   189 TGLDRKKAAVFYK-----SSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGID 243
             T LDR  A  F+K      ++      EMT++SGI  I  +  ICDF FDPCGYSMNG+D
Sbjct:   183 TELDRVNARSFFKRKGDEKNNSDSAGKEMTRLSGIDNINANAYICDFAFDPCGYSMNGVD 242

Query:   244 GPAFSTVHVTPEDGFSYASYEA--AGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGT 301
             G  +ST+HVTPEDGFSYAS+E   + +D        ++ R ++ F P + S+A T G G 
Sbjct:   243 GDRYSTIHVTPEDGFSYASFECGLSLYDNGHEDISEVLSRAIDVFRPSDVSIATTYG-GE 301

Query:   302 QWWSMEGADVEGYSSE-------TAVKQELAGGGCVVYKTYS 336
              +       VE   ++       + +  E  G G VVY++++
Sbjct:   302 DYNHEVTKRVERVLAKKLDLKCRSRLMDEFPGSGTVVYQSFT 343

GO:0004014 "adenosylmethionine decarboxylase activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006597 "spermine biosynthetic process" evidence=IEA

GO:0008295 "spermidine biosynthetic process" evidence=IEA

DICTYBASE|DDB_G0275567 amd1 "S-adenosylmethionine decarboxylase" [Dictyostelium discoideum (taxid:44689)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 122/334 (36%), Positives = 177/334 (52%)

Query:    14 GFEGFEKRLEITFSPAP------IFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTE 67
             GFEG EK+L+I F P        I   PS +GLR + + +  + LD A+CTI+SQ SN  
Sbjct:    28 GFEGPEKKLDIRFGPISKGSVKSIAGSPSKVGLRTIDKEKWQTVLDSARCTIISQTSNDH 87

Query:    68 FDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXXXXXXXXXYSRGSFIFPN 127
              DSYVLSESSLFV+P + ++KTCGTT LL  I ++               +SR +   P+
Sbjct:    88 MDSYVLSESSLFVYPRRAMIKTCGTTTLLHLIAKMVQVGKECGLEVEMVVFSRKNLNQPS 147

Query:   128 YQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSAS--KERSFDGVV-TL 184
              Q  PHC FS+EV+ LN+ F   + +A+V+GD      +W++Y A   K  +      T 
Sbjct:   148 KQVFPHCSFSDEVNFLNKIF---DGQAYVMGDVN--KDHWNLYIADFRKNPTLQRTEQTF 202

Query:   185 EMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDG 244
             E+ M  LD      F+K       A + T  SGI+++LP  +I DF+FDPCGYSMNG+  
Sbjct:   203 EVMMHDLDETVMKQFFKREGV--SAWDTTVNSGIADLLPGSMIDDFQFDPCGYSMNGLLN 260

Query:   245 PAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQW- 303
               + T+H+TPE   SY S++    ++ L  +  L+ +VLN F P  F+ A+    G    
Sbjct:   261 EFYWTIHITPESHCSYVSFDT---NVALADYNQLLAKVLNVFKPGRFTAALYAEDGAPCG 317

Query:   304 --WSMEGADVEGYSSETAVKQELAGGGCVVYKTY 335
               ++    +V  Y+ +        GG  VV   Y
Sbjct:   318 DPYTAFDVNVPSYAIQNKTVHGFDGGYDVVVSNY 351

GO:0008295 "spermidine biosynthetic process" evidence=IEA

GO:0006597 "spermine biosynthetic process" evidence=IEA

GO:0004014 "adenosylmethionine decarboxylase activity" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0006596 "polyamine biosynthetic process" evidence=IEA

GO:0006557 "S-adenosylmethioninamine biosynthetic process" evidence=IEA

WB|WBGene00004875 smd-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 110/300 (36%), Positives = 160/300 (53%)

Query:     8 PVASP---IGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLS 64
             PV +P     FEG EK LE+ F  +   T      LR + R ++D+ LD+A+C I+    
Sbjct:    15 PVKAPDEEYFFEGAEKLLELWFCSS---TQNETRSLRIIPREEIDAMLDIARCKILHSKH 71

Query:    65 NTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXXXXXXXXX--YSRGS 122
             N   DSYVLSESSLF+  +++ILKTCGTT+LL+++P I                 YSR +
Sbjct:    72 NESIDSYVLSESSLFISDNRVILKTCGTTRLLAALPVIMQLAGAYAGLDQVQSVYYSRKN 131

Query:   123 FIFPNYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV 182
             F+ P+ QPS H  F  EV  L+  F  ++  A+ +G  K  +R W++Y+  +E  F    
Sbjct:   132 FLRPDLQPSLHKNFDAEVEYLDSFF--VDGHAYCLGSLK-QDR-WYLYTFHREVEFPAHK 187

Query:   183 ----TLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHV-ICDFEFDPCGY 237
                 TLE+ M+ LD +    F K  +  G    M   +GI +I+P+   + D  FDPCGY
Sbjct:   188 QPDHTLEILMSDLDEEVLHKFTKDYAVDGNDCFMR--AGIDKIIPAGADVHDELFDPCGY 245

Query:   238 SMNGI--DGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAV 295
             SMN    D   ++T+HVTPE  FS+AS+E    +  LV      ++VL  F P +  + V
Sbjct:   246 SMNAYMNDTDQYATIHVTPEKAFSFASFET---NQDLVCLYSQTRKVLQCFRPNKILMTV 302

GO:0004014 "adenosylmethionine decarboxylase activity" evidence=IEA;IDA

GO:0008295 "spermidine biosynthetic process" evidence=IEA;IDA

GO:0006597 "spermine biosynthetic process" evidence=IEA;IDA

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0016358 "dendrite development" evidence=IMP

FB|FBgn0019932 SamDC "S-adenosylmethionine decarboxylase" [Drosophila melanogaster (taxid:7227)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 113/318 (35%), Positives = 166/318 (52%)

Query:    15 FEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLS 74
             FEG EK LEI F  +    D     LR ++RS  ++ L    C I+S   N   D++VLS
Sbjct:     9 FEGVEKLLEIWFEESSNGDDD----LRNISRSDWENVLSNVNCQIISTSKNDIIDAFVLS 64

Query:    75 ESSLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXXXXXXXXX-YSRGSFIFPNYQPSPH 133
             ESS+FV   + ILKTCGTT  L  + Q+                YSR +F  P  Q +PH
Sbjct:    65 ESSMFVSKRRWILKTCGTTTPLKCLGQLLKLAEANGYNVVADLFYSRKNFTRPEAQITPH 124

Query:   134 CCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASK------------ERSFDGV 181
               F+EEV+ L+  F   N +++ +G        W++Y+ S+            E++ D  
Sbjct:   125 QGFTEEVTYLDSIFP--NGRSYCLGSMNL--ECWYLYTFSRSDIKITPQLISDEKNVDSD 180

Query:   182 V--TLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSM 239
                T+E+ M  LD +  ++FYK+      A+  T  SGI  ILP+  I DF FDPCGYSM
Sbjct:   181 PDQTIEILMQDLDPETMSIFYKNKFND--ANGATVKSGIDTILPTMHIDDFLFDPCGYSM 238

Query:   240 NGI-DGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCG 298
             NGI D   + T+H+TPE+ FSY S+E    ++ L  +  L+ +V+N+F P +F V +   
Sbjct:   239 NGINDKGEYMTIHITPENQFSYVSFET---NVALSNYRKLINQVINTFKPGKFIVTIFAN 295

Query:   299 S-GTQWWSMEGADVEGYS 315
                  + +M+  +VE YS
Sbjct:   296 KCSLAYETMKELEVE-YS 312

GO:0004014 "adenosylmethionine decarboxylase activity" evidence=IEA;ISS;NAS

GO:0006597 "spermine biosynthetic process" evidence=IEA;NAS

GO:0008295 "spermidine biosynthetic process" evidence=IEA;NAS

UNIPROTKB|Q5F484 AMD1 "S-adenosylmethionine decarboxylase proenzyme" [Gallus gallus (taxid:9031)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 108/289 (37%), Positives = 158/289 (54%)

Query:    15 FEGFEKRLEITFS---PAPIFTDPS-GLG-LRALTRSQLDSFLDLAKCTIVSQLSNTEFD 69
             FEG EK LE+ F+   PAP     S G G LR + R + D  L+   C I+S     + +
Sbjct:     9 FEGTEKLLEVWFARQQPAPQEPHQSKGSGDLRTIPRIEWDKLLENVHCLIISVTKTDKQE 68

Query:    70 SYVLSESSLFVFPSKIILKTCGTTKLLSS-IPQIXXXXXXXXXXXXXXX-YSRGSFIFPN 127
             +YVLSESS+FV   + ILKTCGTT LL + +P +                YSR +F+ P+
Sbjct:    69 AYVLSESSMFVSKRRFILKTCGTTLLLQALVPLLELAREYSGFDSIQSFFYSRKNFMKPS 128

Query:   128 YQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSAS--KER-SFDGVVTL 184
             +Q  PH  F EEV  LNE F   N  A+ +G  +  +  W++Y+    + R S     TL
Sbjct:   129 HQEYPHRNFQEEVEFLNEIFP--NGAAYCMG--RMNSDCWYLYTLDFPESRISNQPDQTL 184

Query:   185 EMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI-- 242
             E+ M+ LD      FY        A+++T+MSGI +++P  VI    F+PCGYSMNG+  
Sbjct:   185 EILMSELDPVVMDQFYMKDGVT--ANDVTRMSGIRDLIPGSVIDATMFNPCGYSMNGMKS 242

Query:   243 DGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
             DG  + T+H+TPE  FSY S+E    ++    ++ L+++V+  F P +F
Sbjct:   243 DG-TYWTIHITPEPEFSYVSFET---NISQTSYDDLIRKVVEVFKPGKF 287

GO:0006597 "spermine biosynthetic process" evidence=IEA

GO:0008295 "spermidine biosynthetic process" evidence=IEA

GO:0004014 "adenosylmethionine decarboxylase activity" evidence=IEA

GO:0006557 "S-adenosylmethioninamine biosynthetic process" evidence=IEA

POMBASE|SPBP4H10.05c spe2 "S-adenosylmethionine decarboxylase proenzyme Spe2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 303 (111.7 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
 Identities = 88/232 (37%), Positives = 129/232 (55%)

Query:    15 FEGFEKRLEITFSPAPIFTDPSG-----LGLRALTRSQLDSFLDLAKCTIVSQLSNTEFD 69
             FEG EK LE+ FS API T+ S      LGL+A++R+  D  L  A+C ++S +++ E D
Sbjct:    20 FEGPEKLLELWFS-APIKTNLSAGEKANLGLKAVSRNDWDDMLAQAQCKVLSVVNSEEID 78

Query:    70 SYVLSESSLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXXXXX-XXXXYSRGSFIFPNY 128
             +Y+LSESS+FVF  KIILKTCGTT LL+S+P++                YSR +F++P  
Sbjct:    79 AYLLSESSMFVFAHKIILKTCGTTTLLASLPRLLEIASSVGFDRPLRIFYSRKNFLYPER 138

Query:   129 QPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYS------ASKERSFDGV- 181
             Q +PH  + EEV  L   F   +  ++V+G P   N +WH++S      +  E S D   
Sbjct:   139 QLAPHTSWEEEVRYLQLFFP--SGCSYVVG-PTNKN-HWHLFSDLADDYSLLEDSLDPED 194

Query:   182 VTLEMCMTGLDRKKAAVFY-------KSSSGPGGASEMTKMSGISEILPSHV 226
              TLE+ MT +  +++  FY       +S+ G     E   +SG   IL S+V
Sbjct:   195 ETLEVLMTDMSPERSLQFYAPSLDVVRSARGDDYVREKNNLSG-GHILGSYV 245

GO:0004014 "adenosylmethionine decarboxylase activity" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006597 "spermine biosynthetic process" evidence=IMP

GO:0008295 "spermidine biosynthetic process" evidence=IMP

GO:0015940 "pantothenate biosynthetic process" evidence=ISO

UNIPROTKB|P50243 AMD1 "S-adenosylmethionine decarboxylase proenzyme" [Bos taurus (taxid:9913)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 104/285 (36%), Positives = 154/285 (54%)

Query:    15 FEGFEKRLEITFS-PAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVL 73
             FEG EK LE+ FS   P     SG  LR + RS+ D  L   +C+I+S     + ++YVL
Sbjct:     7 FEGTEKLLEVWFSRQQPDANQGSG-DLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVL 65

Query:    74 SESSLFVFPSKIILKTCGTTKLLSS-IPQIXXXXXXXXXXXXXXX-YSRGSFIFPNYQPS 131
             SESS+FV   + ILKTCGTT LL + +P +                YSR +F+ P++Q  
Sbjct:    66 SESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGY 125

Query:   132 PHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSAS--KERSFDGV-VTLEMCM 188
             PH  F EE+  LN  F   N  A+ +G  +  +  W++Y+    + R  +    TLE+ M
Sbjct:   126 PHRNFQEEIEFLNAIFP--NGAAYCMG--RMNSDCWYLYTLDFPESRVINQPDQTLEILM 181

Query:   189 TGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGPA 246
             + LD      FY        A ++T+ SGI +++P  VI    F+PCGYSMNG+  DG  
Sbjct:   182 SELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG-T 238

Query:   247 FSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
             + T+H+TPE  FSY S+E    +L    ++ L+++V+  F P +F
Sbjct:   239 YWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 280

GO:0006557 "S-adenosylmethioninamine biosynthetic process" evidence=IEA

GO:0004014 "adenosylmethionine decarboxylase activity" evidence=IEA

GO:0008295 "spermidine biosynthetic process" evidence=IEA

GO:0006597 "spermine biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q42679	DCAM_CATRO	4, ., 1, ., 1, ., 5, 0	0.5714	0.9148	0.9635	N/A	no
O65354	DCAM_HELAN	4, ., 1, ., 1, ., 5, 0	0.5271	0.9281	0.9667	N/A	no
Q96471	DCAM_IPONI	4, ., 1, ., 1, ., 5, 0	0.5446	0.9202	0.9558	N/A	no
P46255	DCAM_SPIOL	4, ., 1, ., 1, ., 5, 0	0.5552	0.9281	0.9614	N/A	no
Q39677	DCAM2_DIACA	4, ., 1, ., 1, ., 5, 0	0.5527	0.9308	0.9283	N/A	no
Q9M4D8	DCAM_VICFA	4, ., 1, ., 1, ., 5, 0	0.5376	0.9148	0.9745	N/A	no
Q38IY3	DCAM_SOLCI	4, ., 1, ., 1, ., 5, 0	0.5384	0.9015	0.9469	N/A	no
Q42613	DCAM1_BRAJU	4, ., 1, ., 1, ., 5, 0	0.5360	0.8164	0.8342	N/A	no
O80402	DCAM_NICSY	4, ., 1, ., 1, ., 5, 0	0.5431	0.9202	0.9584	N/A	no
Q96555	DCAM_DATST	4, ., 1, ., 1, ., 5, 0	0.5498	0.9015	0.9364	N/A	no
O24575	DCAM_MAIZE	4, ., 1, ., 1, ., 5, 0	0.5840	0.9228	0.8675	N/A	no
Q9AXE3	DCAM_DAUCA	4, ., 1, ., 1, ., 5, 0	0.5441	0.9042	0.9418	N/A	no
Q43820	DCAM_PEA	4, ., 1, ., 1, ., 5, 0	0.5376	0.9148	0.9745	N/A	no
Q42829	DCAM_HORCH	4, ., 1, ., 1, ., 5, 0	0.5674	0.9202	0.8804	N/A	no
Q9M6K1	DCAM_IPOBA	4, ., 1, ., 1, ., 5, 0	0.5446	0.9202	0.9558	N/A	no
O04009	DCAM_TOBAC	4, ., 1, ., 1, ., 5, 0	0.5459	0.9202	0.9584	N/A	no
Q9SDM8	DCAM3_BRAJU	4, ., 1, ., 1, ., 5, 0	0.5602	0.8590	0.8801	N/A	no
A2XV58	DCAM_ORYSI	4, ., 1, ., 1, ., 5, 0	0.5666	0.9308	0.8793	N/A	no
Q8T1E3	DCAM_DICDI	4, ., 1, ., 1, ., 5, 0	0.3693	0.8377	0.8311	yes	no
O49972	DCAM2_BRAJU	4, ., 1, ., 1, ., 5, 0	0.5343	0.8563	0.8726	N/A	no
Q04694	DCAM_SOLTU	4, ., 1, ., 1, ., 5, 0	0.5384	0.9015	0.9416	N/A	no
Q39676	DCAM1_DIACA	4, ., 1, ., 1, ., 5, 0	0.5506	0.9414	0.9291	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.1.1.50	0.946
3rd Layer	4.1.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00017121001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (387 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00028846001	SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (297 aa)						•	•		0.920
	pVvSPMS	SubName- Full=Chromosome undetermined scaffold_171, whole genome shotgun sequence; (369 aa)						•	•		0.919
	GSVIVG00016124001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (374 aa)						•	•		0.915
	GSVIVG00032257001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (336 aa)						•	•		0.914
	GSVIVG00019965001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (329 aa)						•	•		0.911
	METK5	RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (391 aa)						•			0.899
	GSVIVG00026899001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (474 aa)						•			0.899
	GSVIVG00025412001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (816 aa)						•			0.899
	GSVIVG00024734001	RecName- Full=Cytosine-specific methyltransferase; EC=2.1.1.37; (926 aa)						•			0.899
	METK4	RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (393 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	376
PLN02524	355	PLN02524, PLN02524, S-adenosylmethionine decarboxy	0.0
pfam01536	328	pfam01536, SAM_decarbox, Adenosylmethionine decarb	1e-139
TIGR00535	334	TIGR00535, SAM_DCase, S-adenosylmethionine decarbo	1e-125

>gnl|CDD|215287 PLN02524, PLN02524, S-adenosylmethionine decarboxylase

 Score =  527 bits (1360), Expect = 0.0
 Identities = 216/363 (59%), Positives = 251/363 (69%), Gaps = 14/363 (3%)

Query: 8   PVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTE 67
              S IGFEGFEKRLEITF   P+F DP+G GLRALTRSQLD  L  A+CTIVS LSN +
Sbjct: 1   MPVSAIGFEGFEKRLEITFFEPPVFADPNGRGLRALTRSQLDEILRPAECTIVSSLSNDQ 60

Query: 68  FDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFPN 127
           FDSYVLSESSLFV+P KII+KTCGTTKLL SIP +L+L+  LSL+V SVKY+RGSFIFP 
Sbjct: 61  FDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPPLLELAARLSLSVRSVKYTRGSFIFPG 120

Query: 128 YQPSPHCCFSEEVSTLNEHFGYLNA--KAHVIGDPKFPNRNWHVYSASKE---RSFDGVV 182
            QP PH  FSEEVS L+ HFG L    KA+V+GDP    + WHVYSAS      S + V 
Sbjct: 121 AQPFPHRSFSEEVSVLDGHFGKLGLGGKAYVMGDP-DKGQKWHVYSASAHNSSNSNEPVY 179

Query: 183 TLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI 242
           TLEMCMTGLDR+KA+VF+K SS    A EMTK SGI +ILP   ICDF FDPCGYSMNGI
Sbjct: 180 TLEMCMTGLDREKASVFFKDSSLS-SAEEMTKASGIRKILPESEICDFAFDPCGYSMNGI 238

Query: 243 DGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQ 302
           +G A ST+HVTPEDGFSYAS+EA G+D   +    LV+RVL  F P+EFSVAV    G +
Sbjct: 239 EGDAISTIHVTPEDGFSYASFEAMGYDPGDLDLSQLVERVLACFKPKEFSVAVHANVGGE 298

Query: 303 WWSM-EGADVEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVPKHCWKEVAA 361
             S     D +GYS +    QEL GGG VVY+T++    A     +P    K  W E  +
Sbjct: 299 AGSWGCSLDPDGYSCKGRSCQELPGGGSVVYQTFT----ATGGCGSPRSTLK--WSENES 352

Query: 362 EEE 364
            E 
Sbjct: 353 CES 355

Length = 355

>gnl|CDD|216558 pfam01536, SAM_decarbox, Adenosylmethionine decarboxylase

 Score =  398 bits (1026), Expect = e-139
 Identities = 180/334 (53%), Positives = 223/334 (66%), Gaps = 18/334 (5%)

Query: 11  SPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDS 70
           S IGFEG EKRLEI F  +P F+D  G GLRAL++SQ D  LD A+CTIVS LSN   DS
Sbjct: 2   SAIGFEGPEKRLEIWFFESP-FSDTHGKGLRALSKSQWDEVLDPAECTIVSSLSNEYIDS 60

Query: 71  YVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFPNYQP 130
           YVLSESSLFV   +IILKTCGTT LL SIP IL+L+++LSL V SV YSR +FIFP  QP
Sbjct: 61  YVLSESSLFVSKYRIILKTCGTTTLLLSIPPILELAEALSLEVQSVFYSRKNFIFPGAQP 120

Query: 131 SPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKER--SFDGVVTLEMCM 188
            PH  FSEEV+ L+ HF     KA+ +G P    + WH+YSAS     S D   TLEM M
Sbjct: 121 YPHRSFSEEVAYLDSHFP--GGKAYCMGPPDKDQK-WHLYSASAPPSESSDPDYTLEMLM 177

Query: 189 TGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILP-SHVICDFEFDPCGYSMNGIDGPAF 247
           TGLD++KA+VF+K  S    A++MT+ SGI +ILP S +  DF+F+PCGYSMN I+G A+
Sbjct: 178 TGLDKEKASVFFKDES--SSAADMTEASGIRKILPNSAICHDFDFEPCGYSMNAIEGDAY 235

Query: 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQWWSME 307
           ST+HVTPEDGFSYAS+E     L+ +    L++RVLN F P EFSV V   S     ++E
Sbjct: 236 STIHVTPEDGFSYASFETN---LKALNLSDLIRRVLNCFQPSEFSVTVFASSVAG-KTLE 291

Query: 308 GA----DVEGYSSETAVKQELAG-GGCVVYKTYS 336
                 +VEGY       Q L   GG +VY+ ++
Sbjct: 292 QKGLSVEVEGYPCRETDHQVLGLPGGSLVYQKFA 325

This is a family of S-adenosylmethionine decarboxylase (SAMDC) proenzymes. In the biosynthesis of polyamines SAMDC produces decarboxylated S-adenosylmethionine, which serves as the aminopropyl moiety necessary for spermidine and spermine biosynthesis from putrescine. The Pfam alignment contains both the alpha and beta chains that are cleaved to form the active enzyme. Length = 328

>gnl|CDD|233012 TIGR00535, SAM_DCase, S-adenosylmethionine decarboxylase proenzyme, eukaryotic form

 Score =  364 bits (936), Expect = e-125
 Identities = 166/337 (49%), Positives = 210/337 (62%), Gaps = 23/337 (6%)

Query: 15  FEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLS 74
           FEG EK LEI F     F    G GLRA+ R+Q+D  LDLA+CTI+S   N   DSYVLS
Sbjct: 1   FEGPEKLLEIWFFEHKKFI-DEGKGLRAIGRAQIDEILDLARCTILSSKKNKSLDSYVLS 59

Query: 75  ESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLS--LAVSSVKYSRGSFIFPNYQPSP 132
           ESSLF++  KII+KTCGTTKLL ++P+IL+L++ LS    V SV YSRG F+FP  QP+ 
Sbjct: 60  ESSLFIYDHKIIIKTCGTTKLLFALPKILQLAEQLSSWYKVFSVFYSRGCFLFPCAQPAI 119

Query: 133 HCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSF----DGVVTLEMCM 188
           H  FSEEV+ LN+ FG  N KA+V+GDP  P + WH+Y A  ER      D   TLEM M
Sbjct: 120 HRNFSEEVAYLNKFFG--NGKAYVVGDPAKPQK-WHLYVAETERETPKIEDPDETLEMLM 176

Query: 189 TGLDRKKAAVFYKSS--SGPGGASEMTKMSGISEILPSHV-ICDFEFDPCGYSMNGIDG- 244
           TGLD++KA+ F+K    S      +MTK SGI +I+P+   ICDF+F+PCGYSMN I G 
Sbjct: 177 TGLDKEKASKFFKGPAASTHNLGYQMTKNSGIDKIIPNSAQICDFDFEPCGYSMNAILGE 236

Query: 245 PAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTC-----GS 299
            A+ST+HVTPE GFSYAS+E+ G D     +  LV RVLN F P EFS+ V        S
Sbjct: 237 KAYSTIHVTPEKGFSYASFESNGIDQGKQDYLDLVLRVLNCFQPSEFSMTVFAKNYQNQS 296

Query: 300 GTQWWSMEGADVEGYSSETAVKQELA-GGGCVVYKTY 335
             +  S+   +          KQEL  G   + Y+ +
Sbjct: 297 FQKLLSI---NESLPDYIKLDKQELDLGDYHLFYQKF 330

This enzyme is a key regulatory enzyme of the polyamine synthetic pathway. This protein is a pyruvoyl-dependent enzyme. The proenzyme is cleaved at a Ser residue that becomes a pyruvoyl group active site [Central intermediary metabolism, Polyamine biosynthesis]. Length = 334

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	376
PLN02524	355	S-adenosylmethionine decarboxylase	100.0
TIGR00535	334	SAM_DCase S-adenosylmethionine decarboxylase proen	100.0
PF01536	331	SAM_decarbox: Adenosylmethionine decarboxylase; In	100.0
KOG0788	334	consensus S-adenosylmethionine decarboxylase [Sign	100.0
TIGR03330	112	SAM_DCase_Bsu S-adenosylmethionine decarboxylase p	95.66
PRK04025	139	S-adenosylmethionine decarboxylase proenzyme; Vali	94.6
PRK01706	123	S-adenosylmethionine decarboxylase proenzyme; Vali	93.45
PRK02770	139	S-adenosylmethionine decarboxylase proenzyme; Prov	93.24
PRK03124	127	S-adenosylmethionine decarboxylase proenzyme; Prov	92.89
PF02675	106	AdoMet_dc: S-adenosylmethionine decarboxylase ; In	92.26
PRK01236	131	S-adenosylmethionine decarboxylase proenzyme; Prov	91.6
PRK00458	127	S-adenosylmethionine decarboxylase proenzyme; Prov	91.08
COG1586	136	SpeD S-adenosylmethionine decarboxylase [Amino aci	84.74

>PLN02524 S-adenosylmethionine decarboxylase

Probab=100.00  E-value=2.2e-129  Score=960.68  Aligned_cols=347  Identities=62%  Similarity=0.970  Sum_probs=322.9

Q ss_pred             CCCCCCCCCccceEEEEEecCCCCCCCCCcccccccCHHHHHHHhhccCCeEEeeecCCceeeeeccCceeeeeCCeEEE
Q 035670            8 PVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSESSLFVFPSKIIL   87 (376)
Q Consensus         8 ~~~s~~~FEG~EKrLEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiIL   87 (376)
                      ++.++.+|||+||||||||++++.+.++.++|||+|||++|++||++|+|+|||+++|+++||||||||||||||+||||
T Consensus         1 ~~~~~~~FEG~EKrLEI~F~~~~~~~~~~~~gLR~l~~~~w~~iL~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiIL   80 (355)
T PLN02524          1 MPVSAIGFEGFEKRLEITFFEPPVFADPNGRGLRALTRSQLDEILRPAECTIVSSLSNDQFDSYVLSESSLFVYPYKIII   80 (355)
T ss_pred             CCCCCCCccccceEEEEEEecCcccCCCCCCccccCCHHHHHHHHHHcCCEEEeecccCCceeeeecceeEEEECCEEEE
Confidence            46788899999999999999887666788899999999999999999999999999999999999999999999999999


Q ss_pred             eccCccchhccHHHHHHHHhhcCceeEEEEEcccccCCCCCCCCCCCChhHHHHHHHHHhCCC--CCceEEecCCCCCCC
Q 035670           88 KTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFPNYQPSPHCCFSEEVSTLNEHFGYL--NAKAHVIGDPKFPNR  165 (376)
Q Consensus        88 KTCGTTtLL~~l~~ll~la~~~~~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~--~g~aY~~G~~~~~~~  165 (376)
                      |||||||||+|||+||++|+++|++|++|+||||||+||++|++||++|+|||++|+++|+++  +|+||+||+++. +|
T Consensus        81 KTCGTT~LL~~i~~ll~la~~~~l~v~~v~YsRknf~fP~~Q~~pH~sf~eEV~~L~~~F~~l~~~G~AY~~G~~~~-~~  159 (355)
T PLN02524         81 KTCGTTKLLLSIPPLLELAARLSLSVRSVKYTRGSFIFPGAQPFPHRSFSEEVSVLDGHFGKLGLGGKAYVMGDPDK-GQ  159 (355)
T ss_pred             EeCCcccHHHHHHHHHHHHHHcCCceeEEEEecccccCcccCCCcccCHHHHHHHHHHhcccccCCceEEEeCCCCC-CC
Confidence            999999999999999999999999999999999999999999999999999999999999864  689999999865 39


Q ss_pred             cEEEEecCCCC---CCCCcceEEEEecCCCHHhhcccccCCCCCCCHHHHHHHhCCccccCCCcccccccCCCcccccCC
Q 035670          166 NWHVYSASKER---SFDGVVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI  242 (376)
Q Consensus       166 hW~ly~~~~~~---~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~~~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i  242 (376)
                      |||||++++..   ..++|+|||||||+||+++|++||++++| ++|.+||+.+||++|+|++.||||+|+|||||||||
T Consensus       160 hW~lY~a~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~-~s~~~~t~~sgI~~i~P~~~iddf~F~PCGYSmN~i  238 (355)
T PLN02524        160 KWHVYSASAHNSSNSNEPVYTLEMCMTGLDREKASVFFKDSSL-SSAEEMTKASGIRKILPESEICDFAFDPCGYSMNGI  238 (355)
T ss_pred             ceEEEeCCCcccccCCCCCeEEEEEccCCCHHHHhhhhhCccc-ccHHHHHHhhChhhhCCCCeecccccCCCccccccc
Confidence            99999998654   36899999999999999999999999987 899999999999999999999999999999999999


Q ss_pred             CCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCeEEEEEEeCCCCc-ccccccCCCCCccccccee
Q 035670          243 DGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQ-WWSMEGADVEGYSSETAVK  321 (376)
Q Consensus       243 ~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~v~~~~~~~~~-~~~~~~~~~~gy~~~~~~~  321 (376)
                      .|++|+|||||||++|||||||||++|....++.+||+|||++|+|++|+|+++++.... ..+....+++||+|.+++.
T Consensus       239 ~g~~y~TIHVTPE~~~SYaSFEtn~~~~~~~~~~~lv~rVl~~F~P~~fsvt~~~~~~~~~~~~~~~~~~~gY~~~~~~~  318 (355)
T PLN02524        239 EGDAISTIHVTPEDGFSYASFEAMGYDPGDLDLSQLVERVLACFKPKEFSVAVHANVGGEAGSWGCSLDPDGYSCKGRSC  318 (355)
T ss_pred             CCCceEEEEECCCCCCeEEEEEeccCCccccCHHHHHHHHHhhcCCceEEEEEEecCccchhccccccCcCCceecCcEE
Confidence            999999999999999999999999989888899999999999999999999999976543 3333445789999999999


Q ss_pred             eeCCCCcEEEEEEEEECCCCcCCCCCCCC-CCccccchhhhhc
Q 035670          322 QELAGGGCVVYKTYSVDPNARCAVSAPPK-VPKHCWKEVAAEE  363 (376)
Q Consensus       322 ~~~~~gy~l~y~~f~~~~~~~~~~~~~~~-~l~~~~~~~~~~~  363 (376)
                      ++|++||+|+|.+|++...  |+   +|| +|+  |++++.++
T Consensus       319 ~~l~~~~~l~y~~f~~~~~--~~---~~~~~~~--~~~~~~~~  354 (355)
T PLN02524        319 QELPGGGSVVYQTFTATGG--CG---SPRSTLK--WSENESCE  354 (355)
T ss_pred             EecCCCcEEEEEEEEecCC--CC---Cchhhhc--cchhcccc
Confidence            9999989999999999884  66   889 999  99887765

>TIGR00535 SAM_DCase S-adenosylmethionine decarboxylase proenzyme, eukaryotic form

Probab=100.00  E-value=4.7e-122  Score=902.63  Aligned_cols=317  Identities=50%  Similarity=0.800  Sum_probs=290.6

Q ss_pred             CCccceEEEEEecCCCCCCCCCcccccccCHHHHHHHhhccCCeEEeeecCCceeeeeccCceeeeeCCeEEEeccCccc
Q 035670           15 FEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTK   94 (376)
Q Consensus        15 FEG~EKrLEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTCGTTt   94 (376)
                      |||+||||||||.+++... +.++|||+|||++|++||++|+|+|||+++|+++||||||||||||||||||||||||||
T Consensus         1 FEG~EKrLEI~F~~~~~~~-~~~~gLR~l~~~~w~~iL~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTCGTTt   79 (334)
T TIGR00535         1 FEGPEKLLEIWFFEHKKFI-DEGKGLRAIGRAQIDEILDLARCTILSSKKNKSLDSYVLSESSLFIYDHKIIIKTCGTTK   79 (334)
T ss_pred             CCCcceEEEEEEecCCcCC-CCCCChhhCCHHHHHHHHHhhCcEEeeeccCCceeEeEeccceeeEECCEEEEEeCCCch
Confidence            9999999999999765433 677999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccHHHHHHHHhhcC--ceeEEEEEcccccCCCCCCCCCCCChhHHHHHHHHHhCCCCCceEEecCCCCCCCcEEEEec
Q 035670           95 LLSSIPQILKLSDSLS--LAVSSVKYSRGSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSA  172 (376)
Q Consensus        95 LL~~l~~ll~la~~~~--~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~g~aY~~G~~~~~~~hW~ly~~  172 (376)
                      ||+|||+||++|++++  ..|++|+||||||+||++|++||++|+|||++|+++|++  |+||+||+++++ +|||+|++
T Consensus        80 LL~~l~~ll~~a~~~~g~~~v~~v~YsRksf~fP~~Q~~pH~sf~eEV~~L~~~F~~--g~AY~~G~~~~~-~~WhlY~~  156 (334)
T TIGR00535        80 LLFALPKILQLAEQLSSWYKVFSVFYSRGCFLFPCAQPAIHRNFSEEVAYLNKFFGN--GKAYVVGDPAKP-QKWHLYVA  156 (334)
T ss_pred             HHHHHHHHHHHHHHhcCcCceeEEEEecccccCcccCCCcCCCHHHHHHHHHHhcCC--CceEEeCCCCCC-CceEEEeC
Confidence            9999999999999885  489999999999999999999999999999999999977  799999999986 89999998


Q ss_pred             CCCC----CCCCcceEEEEecCCCHHhhcccccCCCCCCC----HHHHHHHhCCccccCC-CcccccccCCCcccccCCC
Q 035670          173 SKER----SFDGVVTLEMCMTGLDRKKAAVFYKSSSGPGG----ASEMTKMSGISEILPS-HVICDFEFDPCGYSMNGID  243 (376)
Q Consensus       173 ~~~~----~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~----~~~~t~~sgi~~l~p~-~~id~f~F~PCGYSmN~i~  243 (376)
                      +...    ..++|+|+|||||+||+++|++||++++  ++    |.+||+.+||++|+|+ +.||||+|+|||||||||.
T Consensus       157 ~~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~--~~~h~~~~~~t~~sgI~~i~P~~~~iddf~F~PCGYSmNgi~  234 (334)
T TIGR00535       157 ETERETPKIEDPDETLEMLMTGLDKEKASKFFKGPA--ASTHNLGYQMTKNSGIDKIIPNSAQICDFDFEPCGYSMNAIL  234 (334)
T ss_pred             CCCccccCCCCCceEeeeecccCCHHHHHhheeCcC--CCccchHHHHHHHhChHhhcCCcceeecccccCCcCcccccc
Confidence            7432    3568999999999999999999999886  56    9999999999999999 9999999999999999999


Q ss_pred             C-CceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCeEEEEEEeCCCCc--cccccc--CCCCCccccc
Q 035670          244 G-PAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQ--WWSMEG--ADVEGYSSET  318 (376)
Q Consensus       244 g-~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~v~~~~~~~~~--~~~~~~--~~~~gy~~~~  318 (376)
                      | ++|+|||||||++|||||||||+++....++.+||+|||++|+|++|+||++++....  ..+...  ..+.||++.+
T Consensus       235 ~~~~Y~TIHITPE~~~SYaSFEtn~~~~~~~~~~~li~~vl~~F~P~~f~vt~f~~~~~~~~~~~~~~~~~~~~~y~~~~  314 (334)
T TIGR00535       235 GEKAYSTIHVTPEKGFSYASFESNGIDQGKQDYLDLVLRVLNCFQPSEFSMTVFAKNYQNQSFQKLLSINESLPDYIKLD  314 (334)
T ss_pred             CCCcEEEEEEcCCCCceEEEEeeccCCcccccHHHHHHHHHHhcCCceEEEEEEecCcccchhhhhhhhccccCCcccee
Confidence            9 7999999999999999999999888878899999999999999999999999876522  111111  2468999999


Q ss_pred             ceeeeCCCCcEEEEEEEEEC
Q 035670          319 AVKQELAGGGCVVYKTYSVD  338 (376)
Q Consensus       319 ~~~~~~~~gy~l~y~~f~~~  338 (376)
                      ++.+++++ |+|+|++|++.
T Consensus       315 ~~~~~~~~-~~l~y~~f~~~  333 (334)
T TIGR00535       315 KQELDLGD-YHLFYQKFQKK  333 (334)
T ss_pred             EEEecCCC-eeEEEEEEEec
Confidence            99999994 99999999875

This protein is a pyruvoyl-dependent enzyme. The proenzyme is cleaved at a Ser residue that becomes a pyruvoyl group active site.

>PF01536 SAM_decarbox: Adenosylmethionine decarboxylase; InterPro: IPR001985 S-adenosylmethionine decarboxylase (AdoMetDC) [] catalyzes the removal of the carboxylate group of S-adenosylmethionine to form S-adenosyl-5'-3-methylpropylamine which then acts as the n-propylamine group donor in the synthesis of the polyamines spermidine and spermine from putrescine

Probab=100.00  E-value=3e-120  Score=893.81  Aligned_cols=322  Identities=46%  Similarity=0.754  Sum_probs=260.2

Q ss_pred             CCCCCCccceEEEEEecCCCCCCCCCcccccccCHHHHHHHhhccCCeEEeeecCCceeeeeccCceeeeeCCeEEEecc
Q 035670           11 SPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSESSLFVFPSKIILKTC   90 (376)
Q Consensus        11 s~~~FEG~EKrLEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTC   90 (376)
                      ++++|||+||||||||.++.....+++.|||+|||++|++||++|+|+|||+++|+++||||||||||||||+|||||||
T Consensus         1 s~~~FEG~EK~LEi~F~~~~~~~~~~~~~LR~i~~~~w~~~L~~a~C~Ils~~sn~~~dAYvLSESSLFV~~~kiilKTC   80 (331)
T PF01536_consen    1 STDFFEGPEKRLEIWFSPPSVFSEPSARGLRSIPREFWDEMLDLAGCEILSEISNEHMDAYVLSESSLFVYPHKIILKTC   80 (331)
T ss_dssp             -------SEEEEEEEEE----------S-GGGS-HHHHHHHHHHCT-EEEEEEE-SSEEEEEEETEEEEEETTEEEEEEE
T ss_pred             CCCCccccceEEEEEEecCCcCCCCCccccccCCHHHHHHHHHhcCCEEEEEEccCceeEEEccCceEEEECCEEEEEEc
Confidence            46899999999999999865555667899999999999999999999999999999999999999999999999999999


Q ss_pred             CccchhccHHHHHHHHhhcCceeEEEEEcccccCCCCCCCCCCCChhHHHHHHHHHhCCCCCceEEecCCCCCCCcEEEE
Q 035670           91 GTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVY  170 (376)
Q Consensus        91 GTTtLL~~l~~ll~la~~~~~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~g~aY~~G~~~~~~~hW~ly  170 (376)
                      ||||||+|||+||++|++++..|+||+||||||+||++|++||++|++||++|+++|++  |+||++|++|+| +|||||
T Consensus        81 GtT~Ll~~l~~ll~la~~~~~~v~~v~YsRknf~~P~~Q~~ph~sf~~Ev~~L~~~F~~--G~aY~~G~~~~d-~~wyly  157 (331)
T PF01536_consen   81 GTTTLLKALPPLLELAKELGDEVEWVFYSRKNFMFPELQPSPHRSFEEEVAYLDSFFPS--GKAYVMGPLDSD-HHWYLY  157 (331)
T ss_dssp             TTS-GGGGHHHHHHHHHHCC-EEEEEEEEEE--SSGGGS-TTSSSHHHHHHHHHCCHTS--EEEEEECSTTSS--EEEEE
T ss_pred             cchhHHHHHHHHHHHHHHhccceeEEEEecccCCCcccCCCccCCHHHHHHHHHHHCCC--CcEEEeCCCCCC-ceEEEE
Confidence            99999999999999999999999999999999999999999999999999999999986  899999999985 699999


Q ss_pred             ecCCCC--CCCCcceEEEEecCCCHHhhcccccCCCCCCCHHHHHHHhCCccccCCCccc-ccccCCCcccccCCCCCce
Q 035670          171 SASKER--SFDGVVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVIC-DFEFDPCGYSMNGIDGPAF  247 (376)
Q Consensus       171 ~~~~~~--~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~~~~~t~~sgi~~l~p~~~id-~f~F~PCGYSmN~i~g~~Y  247 (376)
                      +++.+.  .+++|+|||||||+|||++|++||++++  ++|++||+.+||++|+|++.|| ||+|+|||||||||.|+.|
T Consensus       158 ~~~~~~~~~~~~D~TLEILMt~Ld~~~~~~F~~~~~--~~~~~~t~~sgi~~l~p~~~i~~~f~F~PCGYS~N~~~~~~Y  235 (331)
T PF01536_consen  158 TADTPESSSSEPDQTLEILMTDLDPEVASQFYRSES--QSGEEITKASGIDDLFPGFEIDDDFLFEPCGYSMNGIDGDRY  235 (331)
T ss_dssp             EEESSS-S-SS--EEEEEEEECE-HHHHHCCC-BTT--B-HHHHHHHTTGGGCSTTSEEE-EEE-SSC-EEEEEECTTEE
T ss_pred             ecCccccccCCCccchhhhhccCCHHHHHHHhcCCC--ccHHHHHHhhhhhcccCCcccccccccCCccccccCCCCCeE
Confidence            998554  5789999999999999999999999988  9999999999999999999999 9999999999999999999


Q ss_pred             EEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCeEEEEEEeCCCCc---ccccccC--CCCCcccccceee
Q 035670          248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQ---WWSMEGA--DVEGYSSETAVKQ  322 (376)
Q Consensus       248 ~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~v~~~~~~~~~---~~~~~~~--~~~gy~~~~~~~~  322 (376)
                      +|||||||++|||||||||+++....++.++|+|||++|+|++|+||++......   .......  ...+|++.|++.+
T Consensus       236 ~TIHVTPE~~~SYaSFEtn~~~~~~~~~~~li~~vl~~F~P~~f~~t~f~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  315 (331)
T PF01536_consen  236 YTIHVTPEEGFSYASFETNVYDFSQESYDDLIRKVLNIFKPGKFSVTLFASSNAEKDSESKLFDLDPKGYGYKRTDRQEY  315 (331)
T ss_dssp             EEEEEE--TTS-EEEEEEES--TTTS-CHHHHHHHHHHH-ECEEEEEEEECTSSHHHCCCSHC-BTTTTEEEEEEEEEEE
T ss_pred             EEEEECCCCCceEEEEEeccCCcCcCCHHHHHHHHHheeCCcEEEEEEEecCCCcchhhhhccccccccccccceeEEEc
Confidence            9999999999999999998777888899999999999999999999988643222   1111122  2456999999999


Q ss_pred             eCCCCcEEEEEEEEEC
Q 035670          323 ELAGGGCVVYKTYSVD  338 (376)
Q Consensus       323 ~~~~gy~l~y~~f~~~  338 (376)
                      +|+ ||+|+|.+|+|.
T Consensus       316 ~~~-~y~lvy~~f~k~  330 (331)
T PF01536_consen  316 DFD-GYDLVYASFEKK  330 (331)
T ss_dssp             CEC-CEEEEEEEEEE-
T ss_pred             cCC-CceEEEEEEEEc
Confidence            998 699999999985

The catalytic mechanism of AdoMetDC involves a covalently-bound pyruvoyl group. This group is post-translationally generated by a self-catalyzed intramolecular proteolytic cleavage reaction between a glutamate and a serine. This cleavage generates two chains, beta (N-terminal) and alpha (C-terminal). The N-terminal serine residue of the alpha chain is then converted by nonhydrolytic serinolysis into a pyruvyol group.; GO: 0004014 adenosylmethionine decarboxylase activity, 0006597 spermine biosynthetic process, 0008295 spermidine biosynthetic process; PDB: 3EP7_A 3EPA_B 3DZ5_A 3DZ2_B 3EPB_B 3DZ7_A 3EP6_A 3EP4_A 1JEN_A 3H0V_B ....

>KOG0788 consensus S-adenosylmethionine decarboxylase [Signal transduction mechanisms]

Probab=100.00  E-value=1e-118  Score=863.70  Aligned_cols=323  Identities=50%  Similarity=0.796  Sum_probs=300.5

Q ss_pred             CCCCCCCccceEEEEEecCCCCCCCCCcccccccCHHHHHHHhhccCCeEEeeecCCceeeeeccCceeeeeCCeEEEec
Q 035670           10 ASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSESSLFVFPSKIILKT   89 (376)
Q Consensus        10 ~s~~~FEG~EKrLEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKT   89 (376)
                      .++.+|||+||||||||.++..+.+++++|||+|+|++||+||+.|+|+|||.++|+.+||||||||||||||+||||||
T Consensus         2 ~~a~~FEG~EKlLEvwF~~~~~~~~~~~~~LR~i~rs~~DeiL~~v~C~IvS~~~n~~~dayvLSESSlFV~~~kiIlKT   81 (334)
T KOG0788|consen    2 VSATGFEGPEKLLEVWFFEPKKFSDKGGKGLRAISKSQWDEILKEVQCTIVSSLKNDEIDAYVLSESSLFVFKRKIILKT   81 (334)
T ss_pred             CcccccccchheEEEEEccCccccccCCccccccChhHHHHHhhhhceeEEeecccchhhhheecccceeEeeeEEEEEe
Confidence            45679999999999999988777778889999999999999999999999999999999999999999999999999999


Q ss_pred             cCccchhccHHHHHHHHhhcC-ceeEEEEEcccccCCCCCCCCCCCChhHHHHHHHHHhCCCCCceEEec-CCCCCCCcE
Q 035670           90 CGTTKLLSSIPQILKLSDSLS-LAVSSVKYSRGSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIG-DPKFPNRNW  167 (376)
Q Consensus        90 CGTTtLL~~l~~ll~la~~~~-~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~g~aY~~G-~~~~~~~hW  167 (376)
                      ||||+||+|||+||+||++++ ..|.+|+||||||+||..|++||++|.|||++|+++|++  |+||+|| ++++  +||
T Consensus        82 CGTT~lL~sL~pLlkLA~~~~~~~v~~v~YSRknFl~P~~Q~~pH~sf~eEV~~L~~~F~~--g~ay~mG~~~~s--~~W  157 (334)
T KOG0788|consen   82 CGTTLLLKALVPLLKLAGELSFDSVQSVFYSRKNFLFPGAQPYPHTSFDEEVEYLDKFFPN--GKAYCMGLNMNS--KCW  157 (334)
T ss_pred             ccchhHHHHHHHHHHHHHHhcccchHhheeccccccCcccCCCCCcCHHHHHHHHHHhcCC--CceEEecCCCCC--Cce
Confidence            999999999999999999999 699999999999999999999999999999999999997  8999999 6665  899


Q ss_pred             EEEecCCCC----CCCCcceEEEEecCCCHHhhcccccCCCCCCCHHHHHHHhCCccccCCCcccccccCCCcccccCCC
Q 035670          168 HVYSASKER----SFDGVVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGID  243 (376)
Q Consensus       168 ~ly~~~~~~----~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~~~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~  243 (376)
                      |||+++...    ..+||+|||||||+|||++|.+||+.++  .+|.+||+.|||++|+|++.||||+|+|||||||||.
T Consensus       158 ~lys~~~~~e~~~~~~~d~TlEvlMt~LD~e~a~~Fyk~~~--~~a~~mT~~SGI~~I~p~s~iddf~F~PCGYSmN~~~  235 (334)
T KOG0788|consen  158 HLYSASADDESNVIDEPDYTLEVCMTELDPEKASVFYKNNA--VSAKEMTDESGIDDILPGSVIDDFAFEPCGYSMNGID  235 (334)
T ss_pred             EEEeccccccccccCCCceeHHHHHhhhChhhhheeecccc--cccccchhhcchhhcCCcceeeccccccccccccCcC
Confidence            999987442    5799999999999999999999999888  8999999999999999999999999999999999999


Q ss_pred             CCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCeEEEEEEeCCCCc-cccccc--CCCCCcccccce
Q 035670          244 GPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQ-WWSMEG--ADVEGYSSETAV  320 (376)
Q Consensus       244 g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~v~~~~~~~~~-~~~~~~--~~~~gy~~~~~~  320 (376)
                      |++|+|||||||++|||||||||++|....++.++|+|||+||+|++|+||++.+..++ ......  .+..+|++.+.+
T Consensus       236 ~d~y~TIHVTPE~~fSYaSFEt~~~~~~~~~~~~li~kvl~~F~P~kfs~t~f~n~~~~~~~~~~~~~~~~~~~kr~~~~  315 (334)
T KOG0788|consen  236 GDAYSTIHVTPEDGFSYASFETVGYDQGLLDLSELISKVLNCFKPNKFSVTVFANYGSESYKHLLSKDVERYGYKRRDMQ  315 (334)
T ss_pred             CceEEEEEeccccCceEEEEEeeccccccccHHHHHHHHHHhcCcCcEEEEEEeeccchhhhhhhhhhhhhhhheeceee
Confidence            99999999999999999999999999999999999999999999999999998877654 322222  233458999999


Q ss_pred             eeeCCCCcEEEEEEEEECC
Q 035670          321 KQELAGGGCVVYKTYSVDP  339 (376)
Q Consensus       321 ~~~~~~gy~l~y~~f~~~~  339 (376)
                      ...|++ |+|+|++|++..
T Consensus       316 ~~~~~~-~~l~y~~f~k~~  333 (334)
T KOG0788|consen  316 SLGFES-YTLVYQSFTKKG  333 (334)
T ss_pred             EecCCC-ceEEEEEeeecc
Confidence            999995 999999999865

>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form

Probab=95.66  E-value=0.04  Score=47.35  Aligned_cols=77  Identities=21%  Similarity=0.289  Sum_probs=58.1

Q ss_pred             HHHHHhCCccccCCCcccccccCCCcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCe
Q 035670          211 EMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPRE  290 (376)
Q Consensus       211 ~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~  290 (376)
                      +..+..|..-+    .+.-+.|+|.|+|.=.|..+...+||.=||.+  ||.+..--++ ...++...++-+.+.|+|.+
T Consensus        31 ~a~~~~g~ti~----~~~~h~F~p~Gvt~v~llaESHisiHTwPE~g--yaavDiftCg-~~~~p~~a~~~l~~~f~~~~  103 (112)
T TIGR03330        31 EAAKVAGATLV----ASHFHKFSPGGVSGVVLLAESHISIHTWPEYG--YAAVDVFTCG-DHSDPEKAFEYLVEALKPKR  103 (112)
T ss_pred             HHHHHcCCEEE----EEEEEEcCCCcEEEEEEecccEEEEEeccCCC--cEEEEEEecC-CCCCHHHHHHHHHHHhCCCe
Confidence            34455554422    24678999999999999999999999999987  5555542122 22478999999999999999


Q ss_pred             EEEE
Q 035670          291 FSVA  294 (376)
Q Consensus       291 f~v~  294 (376)
                      ..+.
T Consensus       104 ~~~~  107 (112)
T TIGR03330       104 VEVR  107 (112)
T ss_pred             EEEE
Confidence            9886

Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).

>PRK04025 S-adenosylmethionine decarboxylase proenzyme; Validated

Probab=94.60  E-value=0.1  Score=46.65  Aligned_cols=81  Identities=25%  Similarity=0.275  Sum_probs=60.9

Q ss_pred             HHHHHhCCccccCCCcccccccCCCcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCe
Q 035670          211 EMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPRE  290 (376)
Q Consensus       211 ~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~  290 (376)
                      +..+..|..-+    .+..+.|+|=|+|.-+|..+...+||.=||.+  ||.+..=-++ ...++...++.+.+.|+|.+
T Consensus        32 ~Aa~~~gatil----~~~~h~F~P~GvTgv~lLaESHisIHTwPE~g--yaavDIftCg-~~~~p~~a~~~L~~~f~~~~  104 (139)
T PRK04025         32 EAAKRGNMEVK----ASYFFKFSPTGVSGVVIVAESHISVHTWPEKG--YAALDVYTCG-EKADPEKAVDYILEQFKAKY  104 (139)
T ss_pred             HHHHHcCCeEE----EEEEEEcCCCcEEEEEEeccceEEEEecccCC--eEEEEEEecC-CCCCHHHHHHHHHHHhCCCe
Confidence            34555554433    35779999999999999999999999999976  5555542122 22478899999999999999


Q ss_pred             EEEEEEeCC
Q 035670          291 FSVAVTCGS  299 (376)
Q Consensus       291 f~v~~~~~~  299 (376)
                      ..++. +.+
T Consensus       105 ~~~~~-l~R  112 (139)
T PRK04025        105 AHVSE-IKR  112 (139)
T ss_pred             EEEEE-EeC
Confidence            99974 444

>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated

Probab=93.45  E-value=0.25  Score=43.35  Aligned_cols=70  Identities=19%  Similarity=0.324  Sum_probs=56.1

Q ss_pred             ccccccCCCcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCeEEEEEEeCCC
Q 035670          227 ICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSG  300 (376)
Q Consensus       227 id~f~F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~v~~~~~~~  300 (376)
                      +..+.|+|=|.|.=+|..+...+||.=||.+  ||.+..=-++ ...++...++.+.+.|+|.+..+. .+.++
T Consensus        46 ~~~h~F~p~GvTgv~llaESHisIHTwPE~g--yaavDiftCg-~~~~p~~a~~~L~~~l~~~~~~~~-~~~RG  115 (123)
T PRK01706         46 VSTKEFDPQGVTVLVLLSESHLSIHTYPEKN--FAAIDCYTCG-TTVEPQIAIDYIVSILKPNEMHIK-RLIRG  115 (123)
T ss_pred             EEEEEcCCCcEEEEEEeeccEEEEEeCccCC--eEEEEEEecC-CCCCHHHHHHHHHHHhCCCeEEEE-EEecC
Confidence            4679999999999999999999999999976  6776652222 224789999999999999999987 44443

>PRK02770 S-adenosylmethionine decarboxylase proenzyme; Provisional

Probab=93.24  E-value=0.28  Score=43.90  Aligned_cols=83  Identities=17%  Similarity=0.290  Sum_probs=61.6

Q ss_pred             HHHHHHhCCccccCCCcccccccCCCcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCC
Q 035670          210 SEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPR  289 (376)
Q Consensus       210 ~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~  289 (376)
                      .+..+..|..-+    .+..+.|+|=|+|.-+|..+...+||.=||.+  ||.+..=-++ ...++...++.+.+.|+|.
T Consensus        44 ~~Aa~~~gativ----~~~~h~F~P~GvTgv~lLaESHisIHTwPE~g--yaavDiftCg-~~~~p~~a~~~L~~~l~~~  116 (139)
T PRK02770         44 TEAAKRAGATLL----NLITHRFEPQGVTALALLAESHISIHTWPESG--YAAVDVFTCG-DHTMPEKACQYLIEELMAK  116 (139)
T ss_pred             HHHHHHcCCEEE----EEEeEEcCCCeEEEEEEecccEEEEEeCcCCC--cEEEEEEecC-CCCCHHHHHHHHHHHhCCC
Confidence            334555564432    34679999999999999999999999999976  5665542122 2247889999999999999


Q ss_pred             eEEEEEEeCCC
Q 035670          290 EFSVAVTCGSG  300 (376)
Q Consensus       290 ~f~v~~~~~~~  300 (376)
                      +..+. .+.++
T Consensus       117 ~~~~~-~~~Rg  126 (139)
T PRK02770        117 RHSLR-SIERE  126 (139)
T ss_pred             eEEEE-EEecC
Confidence            99987 44443

>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional

Probab=92.89  E-value=0.34  Score=42.73  Aligned_cols=82  Identities=17%  Similarity=0.157  Sum_probs=61.1

Q ss_pred             HHHHHhCCccccCCCcccccccCCCcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCe
Q 035670          211 EMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPRE  290 (376)
Q Consensus       211 ~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~  290 (376)
                      +..+.+|..-+    .+..+.|+|=|.|.=+|..+...+||.=||.+  ||.+..=-++ ...++...++.+.+.|+|++
T Consensus        32 ~a~~~~g~til----~~~~h~F~p~GvTgv~llaESHisIHTwPE~g--yaavDiftCg-~~~~p~~a~~~L~~~f~~~~  104 (127)
T PRK03124         32 DAALEAGAEVR----EVAFHKFSPQGVSGVVVISESHLTIHTWPELG--YAAVDVFTCG-DRVDPWDACNYIAEGLGAKT  104 (127)
T ss_pred             HHHHHcCCeEE----EEEeEEcCCCcEEEEEEeeccEEEEEeCccCC--eEEEEEEecC-CCCCHHHHHHHHHHHhCCCe
Confidence            34455554322    35779999999999999999999999999975  6766652222 22478899999999999999


Q ss_pred             EEEEEEeCCC
Q 035670          291 FSVAVTCGSG  300 (376)
Q Consensus       291 f~v~~~~~~~  300 (376)
                      ..+. .+.++
T Consensus       105 ~~~~-~~~RG  113 (127)
T PRK03124        105 REAI-ELKRG  113 (127)
T ss_pred             EEEE-EEecC
Confidence            9987 44443

>PF02675 AdoMet_dc: S-adenosylmethionine decarboxylase ; InterPro: IPR003826 Polyamines such as spermidine and spermine are essential for cellular growth under most conditions, being implicated in a large number of cellular processes including DNA, RNA and protein synthesis

Probab=92.26  E-value=0.14  Score=43.13  Aligned_cols=76  Identities=18%  Similarity=0.363  Sum_probs=55.3

Q ss_pred             HHHHHhCCccccCCCcccccccCCCcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCe
Q 035670          211 EMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPRE  290 (376)
Q Consensus       211 ~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~  290 (376)
                      +..+..|+..+    .+.-+.|+|=|+|.=++.++...+||.=||.++-++-.=|.+-    .++..+++.+.+.|+|.+
T Consensus        26 ~a~~~~g~~~~----~~~~~~f~p~GvT~~~ll~ESHisiHTwPE~~~~avDiftC~~----~~p~~a~~~l~~~f~~~~   97 (106)
T PF02675_consen   26 DAAKAAGLTVL----SISFHKFEPQGVTGVALLAESHISIHTWPEHGYAAVDIFTCGE----FDPEKAIEYLKKAFKPDK   97 (106)
T ss_dssp             HHHHHCT-EEE----EEEEEE-SSS-EEEEEEETTEEEEEEEEGGGTEEEEEEEEEST----HHHHHHHHHHHHHHT-SE
T ss_pred             HHHHHcCCEEE----EEEEEEcCCCcEEEEEEhhccEEEEEeCCCcCeEEEEEEEcCC----CCHHHHHHHHHHHhCCCE
Confidence            34555565443    2467899999999999999999999999999944443333322    478899999999999999


Q ss_pred             EEEE
Q 035670          291 FSVA  294 (376)
Q Consensus       291 f~v~  294 (376)
                      ..++
T Consensus        98 ~~~~  101 (106)
T PF02675_consen   98 VKIT  101 (106)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9986

S-adenosylmethionine decarboxylase (AdoMetDC) plays an essential regulatory role in the polyamine biosynthetic pathway by generating the n-propylamine residue required for the synthesis of spermidine and spermine from putrescein [, ]. Unlike many amino acid decarboxylases AdoMetDC uses a covalently bound pyruvate residue as a cofactor rather than the more common pyridoxal 5'-phosphate. These proteins can be divided into two main groups which show little sequence similarity either to each other, or to other pyruvoyl-dependent amino acid decarboxylases: class I enzymes found in bacteria and archaea, and class II enzymes found in eukaryotes. In both groups the active enzyme is generated by the post-translational autocatalytic cleavage of a precursor protein. This cleavage generates the pyruvate precursor from an internal serine residue and results in the formation of two non-identical subunits termed alpha and beta which form the active enzyme. Members of this family are related to the amino terminus of Escherichia coli S-adenosylmethionine decarboxylase.; GO: 0004014 adenosylmethionine decarboxylase activity, 0008295 spermidine biosynthetic process; PDB: 1VR7_A 3IWC_D 3IWD_D 3IWB_C 1TMI_A 1TLU_A 2III_A.

>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional

Probab=91.60  E-value=0.59  Score=41.46  Aligned_cols=83  Identities=13%  Similarity=0.254  Sum_probs=61.2

Q ss_pred             HHHHHHhCCccccCCCcccccccCCCcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCC
Q 035670          210 SEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPR  289 (376)
Q Consensus       210 ~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~  289 (376)
                      .+..+.+|..-+    .+..+-|+|=|+|.=+|..+...+||.=||.+  ||.+..=-++ ...++...++-+.+.|+|.
T Consensus        32 ~~aa~~~g~tiv----~~~~h~F~p~GvTgv~lLaESHisIHTwPE~g--yaavDiftCg-~~~~p~~a~~~L~~~f~~~  104 (131)
T PRK01236         32 EGAVKYAELTKI----SSHYYQFNPHGATGVVLLAESHISIHTWPEYG--LVTLDVYTCG-DPSKADKAFEYIIKKLKPK  104 (131)
T ss_pred             HHHHHHCCCEEE----EEEEEEcCCCcEEEEEEeeccEEEEEeCccCC--eEEEEEEecC-CCCCHHHHHHHHHHHhCCC
Confidence            334555564422    34678999999999999999999999999975  5666652222 2246889999999999999


Q ss_pred             eEEEEEEeCCC
Q 035670          290 EFSVAVTCGSG  300 (376)
Q Consensus       290 ~f~v~~~~~~~  300 (376)
                      +..++ .+.++
T Consensus       105 ~~~~~-~l~RG  114 (131)
T PRK01236        105 RVDHK-VLERG  114 (131)
T ss_pred             eEEEE-EEecC
Confidence            99987 44443

>PRK00458 S-adenosylmethionine decarboxylase proenzyme; Provisional

Probab=91.08  E-value=0.89  Score=40.09  Aligned_cols=78  Identities=17%  Similarity=0.293  Sum_probs=58.2

Q ss_pred             HHHHHhCCccccCCCcccccccCC-CcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCC
Q 035670          211 EMTKMSGISEILPSHVICDFEFDP-CGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPR  289 (376)
Q Consensus       211 ~~t~~sgi~~l~p~~~id~f~F~P-CGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~  289 (376)
                      +..+..|..-+    .+.-+.|.| =|+|.=+|..+...+||.=||.++  |.+..=-++ ...++...++.+.+.|+|.
T Consensus        43 ~aa~~~g~til----~~~~h~F~p~~GvT~v~lLaESHisIHTwPE~gy--aavDiftCg-~~~~p~~a~~~L~~~f~~~  115 (127)
T PRK00458         43 EAAKIANMTLL----DIKSWKFGKKGGVSVIALVLESHIAIHTWPEYNF--ATVDVYTCG-EHTDPQKAFEYIVSKLKPK  115 (127)
T ss_pred             HHHHHcCCEEE----EEEEEECCCCCCEEEEEEecccEEEEEeCcCCCc--EEEEEEecC-CCCCHHHHHHHHHHHhCCC
Confidence            34455554432    346788998 899999999999999999999765  555542122 2236889999999999999


Q ss_pred             eEEEEE
Q 035670          290 EFSVAV  295 (376)
Q Consensus       290 ~f~v~~  295 (376)
                      +..++.
T Consensus       116 ~~~~~~  121 (127)
T PRK00458        116 RYTVNY  121 (127)
T ss_pred             EEEEEE
Confidence            999873

>COG1586 SpeD S-adenosylmethionine decarboxylase [Amino acid transport and metabolism]

Probab=84.74  E-value=2.2  Score=38.25  Aligned_cols=66  Identities=21%  Similarity=0.282  Sum_probs=55.2

Q ss_pred             ccccccCCCcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCeEEEEE
Q 035670          227 ICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAV  295 (376)
Q Consensus       227 id~f~F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~v~~  295 (376)
                      +.-+.|.|=|=|-=.|..+..-|||.=||-+  ||..+.--+. ...++..-++-+++-|+|.++++..
T Consensus        54 ~~~~~f~p~GvSgvvliaESHitiHTwPEyg--~A~iDVyTCG-~~~~p~~A~~yi~~~L~p~~v~v~~  119 (136)
T COG1586          54 IAFHKFSPQGVSGVVLIAESHITIHTWPEYG--YATIDVYTCG-DHIDPLKAFNYLVEQLKPKRVTVDY  119 (136)
T ss_pred             EEeEEecCCCeEEEEEEEeeeeeEecCCccC--ceEEEEEccC-CCCCHHHHHHHHHHHhCCcEEEEEE
Confidence            6788999999999999999999999999999  8888862111 2247788899999999999999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	376
1mhm_A	288	Crystal Structure Of S-Adenosylmethionine Decarboxy		1e-66
1msv_A	354	The S68a S-adenosylmethionine Decarboxylase Proenzy		1e-32
1jl0_A	334	Structure Of A Human S-Adenosylmethionine Decarboxy		2e-31
3h0v_A	266	Human Adometdc With 5'-Deoxy-5'-(Dimethylsulfonio)		1e-21
3dz2_A	267	Human Adometdc With 5'-[(3-Aminopropyl)methylamino]		1e-21
1jen_A	267	Human S-Adenosylmethionine Decarboxylase Length = 2		1e-21
3ep9_A	260	Human Adometdc With No Putrescine Bound Length = 26		1e-21
3ep3_A	260	Human Adometdc D174n Mutant With No Putrescine Boun		1e-21
3ep5_A	260	Human Adometdc E178q Mutant With No Putrescine Boun		3e-21
3ep4_A	260	Human Adometdc E256q Mutant With No Putrescine Boun		3e-21
1i72_A	267	Human S-Adenosylmethionine Decarboxylase With Coval		3e-21
3dz3_A	267	Human Adometdc F223a Mutant With Covalently Bound S		1e-20
1i7m_A	267	Human S-Adenosylmethionine Decarboxylase With Coval		3e-18
1mhm_B	72	Crystal Structure Of S-Adenosylmethionine Decarboxy		2e-16

>pdb|1MHM|A Chain A, Crystal Structure Of S-Adenosylmethionine Decarboxylase From Potato Length = 288

Iteration: 1
 Score =  249 bits (637), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 140/285 (49%), Positives = 178/285 (62%), Gaps = 12/285 (4%)
Query: 77  SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXXXXXXXXXYSRGSFIFPNYQPSPHCCF 136
           SLFV+  KII+KTCGTTKLL +IP I               Y+RGSFIFP  Q  PH  F
Sbjct: 2   SLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHF 61
Query: 137 SEEVSTLNEHFGYLNA--KAHVIGDPKFPNRNWHVYSAS--KERSFDGVVTLEMCMTGLD 192
           SEEV+ L+ +FG L A  KA ++G P    + WHVYSAS    +S D V TLEMCMTGLD
Sbjct: 62  SEEVAVLDGYFGKLAAGSKAVIMGSPD-KTQKWHVYSASAGSVQSNDPVYTLEMCMTGLD 120
Query: 193 RKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHV 252
           R+KA+VFYK+      A+ MT  SGI +ILP   ICDFEF+PCGYSMN I+G A ST+H+
Sbjct: 121 REKASVFYKTEES--SAAHMTVRSGIRKILPKSEICDFEFEPCGYSMNSIEGAAVSTIHI 178
Query: 253 TPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQWWS-MEGADV 311
           TPEDGF+YAS+E+ G++ + +   PLV+RVL  F P EFSVA+     T+    +   DV
Sbjct: 179 TPEDGFTYASFESVGYNPKTMELGPLVERVLACFEPAEFSVALHADVATKLLERICSVDV 238
Query: 312 EGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVPKHCW 356
           +GYS      +E   GG +VY+ ++  P       +P  V K CW
Sbjct: 239 KGYSLAEWSPEEFGEGGSIVYQKFTRTPYCE----SPKSVLKGCW 279

>pdb|1MSV|A Chain A, The S68a S-adenosylmethionine Decarboxylase Proenzyme Processing Mutant. Length = 354

Iteration: 1
 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 151/286 (52%), Gaps = 21/286 (7%)
Query: 15  FEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLS 74
           FEG EK LE+ FS      +     LR + RS+ D  L   +C+I+S     + ++YVLS
Sbjct: 7   FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLS 66
Query: 75  ESSLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSP 132
           E+S+FV   + ILKTCGTT LL ++  +                 YSR +F+ P++Q  P
Sbjct: 67  EASMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYP 126
Query: 133 HCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMC 187
           H  F EE+  LN  F   N  A+ +G  +  +  W++Y+     S   V+     TLE+ 
Sbjct: 127 HRNFQEEIEFLNAIFP--NGAAYCMG--RMNSDCWYLYTLDFPES--RVISQPDQTLEIL 180
Query: 188 MTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGP 245
           M+ LD      FY        A ++T+ SGI +++P  VI    F+PCGYSMNG+  DG 
Sbjct: 181 MSELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG- 237
Query: 246 AFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
            + T+H+TPE  FSY S+E    +L    ++ L+++V+  F P +F
Sbjct: 238 TYWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 280

>pdb|1JL0|A Chain A, Structure Of A Human S-Adenosylmethionine Decarboxylase Self-Processing Ester Intermediate And Mechanism Of Putrescine Stimulation Of Processing As Revealed By The H243a Mutant Length = 334

Iteration: 1
 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/286 (34%), Positives = 149/286 (52%), Gaps = 21/286 (7%)
Query: 15  FEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLS 74
           FEG EK LE+ FS      +     LR + RS+ D  L   +C+I+S     + ++YVLS
Sbjct: 7   FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLS 66
Query: 75  ESSLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSP 132
           ESS+FV   + ILKTCGTT LL ++  +                 YSR +F+ P++Q  P
Sbjct: 67  ESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYP 126
Query: 133 HCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMC 187
           H  F EE+  LN  F   N   + +G  +  +  W++Y+     S   V+     TLE+ 
Sbjct: 127 HRNFQEEIEFLNAIFP--NGAGYCMG--RMNSDCWYLYTLDFPES--RVISQPDQTLEIL 180
Query: 188 MTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGP 245
           M+ LD      FY        A ++T+ SGI +++P  VI    F+PCGYSMNG+  DG 
Sbjct: 181 MSELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG- 237
Query: 246 AFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
            + T+ +TPE  FSY S+E    +L    ++ L+++V+  F P +F
Sbjct: 238 TYWTIAITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 280

>pdb|3H0V|A Chain A, Human Adometdc With 5'-Deoxy-5'-(Dimethylsulfonio) Adenosine Length = 266

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 21/224 (9%)
Query: 77  SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSPHC 134
           S+FV   + ILKTCGTT LL ++  +                 YSR +F+ P++Q  PH 
Sbjct: 1   SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 135 CFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMCMT 189
            F EE+  LN  F   N  A+ +G  +  +  W++Y+     S   V+     TLE+ M+
Sbjct: 61  NFQEEIEFLNAIFP--NGAAYCMG--RMNSDCWYLYTLDFPES--RVISQPDQTLEILMS 114
Query: 190 GLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGPAF 247
            LD      FY        A ++T+ SGI +++P  VI    F+PCGYSMNG+  DG  +
Sbjct: 115 ELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG-TY 171
Query: 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
            T+H+TPE  FSY S+E    +L    ++ L+++V+  F P +F
Sbjct: 172 WTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 212

>pdb|3DZ2|A Chain A, Human Adometdc With 5'-[(3-Aminopropyl)methylamino]-5'deoxy- 8-Methyladenosine Length = 267

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 21/224 (9%)
Query: 77  SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSPHC 134
           S+FV   + ILKTCGTT LL ++  +                 YSR +F+ P++Q  PH 
Sbjct: 2   SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 61
Query: 135 CFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMCMT 189
            F EE+  LN  F   N  A+ +G  +  +  W++Y+     S   V+     TLE+ M+
Sbjct: 62  NFQEEIEFLNAIFP--NGAAYCMG--RMNSDCWYLYTLDFPES--RVISQPDQTLEILMS 115
Query: 190 GLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGPAF 247
            LD      FY        A ++T+ SGI +++P  VI    F+PCGYSMNG+  DG  +
Sbjct: 116 ELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG-TY 172
Query: 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
            T+H+TPE  FSY S+E    +L    ++ L+++V+  F P +F
Sbjct: 173 WTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 213

>pdb|1JEN|A Chain A, Human S-Adenosylmethionine Decarboxylase Length = 267

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 21/224 (9%)
Query: 77  SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSPHC 134
           S+FV   + ILKTCGTT LL ++  +                 YSR +F+ P++Q  PH 
Sbjct: 2   SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 61
Query: 135 CFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMCMT 189
            F EE+  LN  F   N  A+ +G  +  +  W++Y+     S   V+     TLE+ M+
Sbjct: 62  NFQEEIEFLNAIFP--NGAAYCMG--RMNSDCWYLYTLDFPES--RVISQPDQTLEILMS 115
Query: 190 GLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGPAF 247
            LD      FY        A ++T+ SGI +++P  VI    F+PCGYSMNG+  DG  +
Sbjct: 116 ELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG-TY 172
Query: 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
            T+H+TPE  FSY S+E    +L    ++ L+++V+  F P +F
Sbjct: 173 WTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 213

>pdb|3EP9|A Chain A, Human Adometdc With No Putrescine Bound Length = 260

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 21/224 (9%)
Query: 77  SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSPHC 134
           S+FV   + ILKTCGTT LL ++  +                 YSR +F+ P++Q  PH 
Sbjct: 1   SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 135 CFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMCMT 189
            F EE+  LN  F   N  A+ +G  +  +  W++Y+     S   V+     TLE+ M+
Sbjct: 61  NFQEEIEFLNAIFP--NGAAYCMG--RMNSDCWYLYTLDFPES--RVISQPDQTLEILMS 114
Query: 190 GLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGPAF 247
            LD      FY        A ++T+ SGI +++P  VI    F+PCGYSMNG+  DG  +
Sbjct: 115 ELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG-TY 171
Query: 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
            T+H+TPE  FSY S+E    +L    ++ L+++V+  F P +F
Sbjct: 172 WTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 212

>pdb|3EP3|A Chain A, Human Adometdc D174n Mutant With No Putrescine Bound Length = 260

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 21/224 (9%)
Query: 77  SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSPHC 134
           S+FV   + ILKTCGTT LL ++  +                 YSR +F+ P++Q  PH 
Sbjct: 1   SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 135 CFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMCMT 189
            F EE+  LN  F   N  A+ +G  +  +  W++Y+     S   V+     TLE+ M+
Sbjct: 61  NFQEEIEFLNAIFP--NGAAYCMG--RMNSDCWYLYTLDFPES--RVISQPNQTLEILMS 114
Query: 190 GLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGPAF 247
            LD      FY        A ++T+ SGI +++P  VI    F+PCGYSMNG+  DG  +
Sbjct: 115 ELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG-TY 171
Query: 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
            T+H+TPE  FSY S+E    +L    ++ L+++V+  F P +F
Sbjct: 172 WTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 212

>pdb|3EP5|A Chain A, Human Adometdc E178q Mutant With No Putrescine Bound Length = 260

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 117/224 (52%), Gaps = 21/224 (9%)
Query: 77  SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSPHC 134
           S+FV   + ILKTCGTT LL ++  +                 YSR +F+ P++Q  PH 
Sbjct: 1   SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 135 CFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMCMT 189
            F EE+  LN  F   N  A+ +G  +  +  W++Y+     S   V+     TL++ M+
Sbjct: 61  NFQEEIEFLNAIFP--NGAAYCMG--RMNSDCWYLYTLDFPES--RVISQPDQTLQILMS 114
Query: 190 GLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGPAF 247
            LD      FY        A ++T+ SGI +++P  VI    F+PCGYSMNG+  DG  +
Sbjct: 115 ELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG-TY 171
Query: 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
            T+H+TPE  FSY S+E    +L    ++ L+++V+  F P +F
Sbjct: 172 WTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 212

>pdb|3EP4|A Chain A, Human Adometdc E256q Mutant With No Putrescine Bound Length = 260

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 117/224 (52%), Gaps = 21/224 (9%)
Query: 77  SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSPHC 134
           S+FV   + ILKTCGTT LL ++  +                 YSR +F+ P++Q  PH 
Sbjct: 1   SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 135 CFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMCMT 189
            F EE+  LN  F   N  A+ +G  +  +  W++Y+     S   V+     TLE+ M+
Sbjct: 61  NFQEEIEFLNAIFP--NGAAYCMG--RMNSDCWYLYTLDFPES--RVISQPDQTLEILMS 114
Query: 190 GLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGPAF 247
            LD      FY        A ++T+ SGI +++P  VI    F+PCGYSMNG+  DG  +
Sbjct: 115 ELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG-TY 171
Query: 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
            T+H+TPE  FSY S++    +L    ++ L+++V+  F P +F
Sbjct: 172 WTIHITPEPEFSYVSFQT---NLSQTSYDDLIRKVVEVFKPGKF 212

>pdb|1I72|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently Bound Pyruvoyl Group And Covalently Bound 5'-Deoxy-5'-[n-Methyl-N-(2- Aminooxyethyl) Amino]adenosine Length = 267

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 21/224 (9%)
Query: 77  SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSPHC 134
           S+FV   + ILKTCGTT LL ++  +                 YSR +F+ P++Q  PH 
Sbjct: 2   SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 61
Query: 135 CFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMCMT 189
            F EE+  LN  F   N   + +G  +  +  W++Y+     S   V+     TLE+ M+
Sbjct: 62  NFQEEIEFLNAIFP--NGAGYCMG--RMNSDCWYLYTLDFPES--RVISQPDQTLEILMS 115
Query: 190 GLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGPAF 247
            LD      FY        A ++T+ SGI +++P  VI    F+PCGYSMNG+  DG  +
Sbjct: 116 ELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG-TY 172
Query: 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
            T+H+TPE  FSY S+E    +L    ++ L+++V+  F P +F
Sbjct: 173 WTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 213

>pdb|3DZ3|A Chain A, Human Adometdc F223a Mutant With Covalently Bound S- Adenosylmethionine Methyl Ester Length = 267

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 21/224 (9%)
Query: 77  SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSPHC 134
           S+FV   + ILKTCGTT LL ++  +                 YSR +F+ P++Q  PH 
Sbjct: 2   SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 61
Query: 135 CFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMCMT 189
            F EE+  LN  F   N  A+ +G  +  +  W++Y+     S   V+     TLE+ M+
Sbjct: 62  NFQEEIEFLNAIFP--NGAAYCMG--RMNSDCWYLYTLDFPES--RVISQPDQTLEILMS 115
Query: 190 GLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGPAF 247
            LD      FY        A ++T+ SGI +++P  VI     +PCGYSMNG+  DG  +
Sbjct: 116 ELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMANPCGYSMNGMKSDG-TY 172
Query: 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
            T+H+TPE  FSY S+E    +L    ++ L+++V+  F P +F
Sbjct: 173 WTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 213

>pdb|1I7M|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently Bound Pyruvoyl Group And Complexed With 4-Amidinoindan-1-One-2'- Amidinohydrazone Length = 267

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 110/224 (49%), Gaps = 21/224 (9%)
Query: 77  SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSPHC 134
           S FV   + ILKTCGTT LL ++  +                 YSR +F  P++Q  PH 
Sbjct: 2   SXFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFXKPSHQGYPHR 61
Query: 135 CFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMCMT 189
            F EE+  LN  F   N   +  G  +  +  W++Y+     S   V+     TLE+  +
Sbjct: 62  NFQEEIEFLNAIFP--NGAGYCXG--RXNSDCWYLYTLDFPES--RVISQPDQTLEILXS 115
Query: 190 GLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGPAF 247
            LD      FY        A ++T+ SGI +++P  VI    F+PCGYS NG   DG  +
Sbjct: 116 ELDPAVXDQFYXKDGVT--AKDVTRESGIRDLIPGSVIDATXFNPCGYSXNGXKSDG-TY 172
Query: 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
            T+H+TPE  FSY S+E    +L    ++ L+++V+  F P +F
Sbjct: 173 WTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 213

>pdb|1MHM|B Chain B, Crystal Structure Of S-Adenosylmethionine Decarboxylase From Potato Length = 72

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 49/66 (74%)
Query: 10 ASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFD 69
           S IGFEGFEKRLEI+F    +F DP+G GLR+L+++QLD  L  A+CTIV  LSN   D
Sbjct: 7  VSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVD 66
Query: 70 SYVLSE 75
          SYVLSE
Sbjct: 67 SYVLSE 72

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	376
1jl0_A	334	Adometdc, S-adenosylmethionine decarboxylase proen	1e-111
1mhm_A	288	Adometdc, samdc, S-adenosylmethionine decarboxylas	1e-103
1mhm_B	72	Adometdc, samdc, S-adenosylmethionine decarboxylas	4e-29

>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme; spermidine biosynthesis, lyase, pyruvate, sandwich, allosteric enzyme, pyruvoyl; 1.50A {Homo sapiens} SCOP: d.156.1.1 PDB: 1msv_A 1i7b_A* 1i79_A* 1i72_A* 1i7c_A* 1i7m_A* 3dz6_A* 3dz2_A* 3dz5_A* 3dz4_A* 3dz7_A* 3h0w_A* 3h0v_A* 1jen_A 3dz3_A* 3ep9_A 3ep6_A* 3ep3_A* 3ep8_A* 3ep5_A* ... Length = 334

 Score =  327 bits (838), Expect = e-111
 Identities = 104/334 (31%), Positives = 166/334 (49%), Gaps = 18/334 (5%)

Query: 11  SPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDS 70
           +   FEG EK LE+ FS      +     LR + RS+ D  L   +C+I+S     + ++
Sbjct: 3   AAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEA 62

Query: 71  YVLSESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLS--LAVSSVKYSRGSFIFPNY 128
           YVLSESS+FV   + ILKTCGTT LL ++  +LKL+   S   ++ S  YSR +F+ P++
Sbjct: 63  YVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSH 122

Query: 129 QPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSF---DGVVTLE 185
           Q  PH  F EE+  LN  F   N   + +G     +  W++Y+     S        TLE
Sbjct: 123 QGYPHRNFQEEIEFLNAIFP--NGAGYCMGRM--NSDCWYLYTLDFPESRVISQPDQTLE 178

Query: 186 MCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGP 245
           + M+ LD      FY        A ++T+ SGI +++P  VI    F+PCGYSMNG+   
Sbjct: 179 ILMSELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSD 236

Query: 246 A-FSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQWW 304
             + T+ +TPE  FSY S+E    +L    ++ L+++V+  F P +F   +     ++  
Sbjct: 237 GTYWTIAITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCR 293

Query: 305 S--MEGADVEGYSSETAVKQELAGGGCVVYKTYS 336
           +       +EG+                V+ +++
Sbjct: 294 TVLASPQKIEGFKRLDCQSAMF-NDYNFVFTSFA 326

>1mhm_A Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1 Length = 288

 Score =  304 bits (780), Expect = e-103
 Identities = 147/293 (50%), Positives = 189/293 (64%), Gaps = 12/293 (4%)

Query: 77  SLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFPNYQPSPHCCF 136
           SLFV+  KII+KTCGTTKLL +IP IL+L+++LSL V  V+Y+RGSFIFP  Q  PH  F
Sbjct: 2   SLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHF 61

Query: 137 SEEVSTLNEHFGYLNA--KAHVIGDPKFPNRNWHVYSASKERSF--DGVVTLEMCMTGLD 192
           SEEV+ L+ +FG L A  KA ++G P    + WHVYSAS       D V TLEMCMTGLD
Sbjct: 62  SEEVAVLDGYFGKLAAGSKAVIMGSPD-KTQKWHVYSASAGSVQSNDPVYTLEMCMTGLD 120

Query: 193 RKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHV 252
           R+KA+VFYK+         MT  SGI +ILP   ICDFEF+PCGYSMN I+G A ST+H+
Sbjct: 121 REKASVFYKTEESSAA--HMTVRSGIRKILPKSEICDFEFEPCGYSMNSIEGAAVSTIHI 178

Query: 253 TPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQWW-SMEGADV 311
           TPEDGF+YAS+E+ G++ + +   PLV+RVL  F P EFSVA+     T+    +   DV
Sbjct: 179 TPEDGFTYASFESVGYNPKTMELGPLVERVLACFEPAEFSVALHADVATKLLERICSVDV 238

Query: 312 EGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVPKHCWKEVAAEEE 364
           +GYS      +E   GG +VY+ ++          +P  V K CWKE   E +
Sbjct: 239 KGYSLAEWSPEEFGEGGSIVYQKFT----RTPYCESPKSVLKGCWKEEEKEGK 287

>1mhm_B Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1 Length = 72

 Score =  106 bits (267), Expect = 4e-29
 Identities = 41/68 (60%), Positives = 49/68 (72%)

Query: 8  PVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTE 67
             S IGFEGFEKRLEI+F    +F DP+G GLR+L+++QLD  L  A+CTIV  LSN  
Sbjct: 5  LPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDY 64

Query: 68 FDSYVLSE 75
           DSYVLSE
Sbjct: 65 VDSYVLSE 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	376
1jl0_A	334	Adometdc, S-adenosylmethionine decarboxylase proen	100.0
1mhm_A	288	Adometdc, samdc, S-adenosylmethionine decarboxylas	100.0
1mhm_B	72	Adometdc, samdc, S-adenosylmethionine decarboxylas	99.96
1vr7_A	142	Adometdc, samdc, S-adenosylmethionine decarboxylas	93.97
2iii_A	135	S-adenosylmethionine decarboxylase proenzyme; two-	93.04

>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme; spermidine biosynthesis, lyase, pyruvate, sandwich, allosteric enzyme, pyruvoyl; 1.50A {Homo sapiens} SCOP: d.156.1.1 PDB: 1msv_A 1i7b_A* 1i79_A* 1i72_A* 1i7c_A* 1i7m_A* 3dz6_A* 3dz2_A* 3dz5_A* 3dz4_A* 3dz7_A* 3h0w_A* 3h0v_A* 1jen_A 3dz3_A* 3ep9_A 3ep6_A* 3ep3_A* 3ep8_A* 3ep5_A* ...

Probab=100.00  E-value=2.7e-123  Score=912.61  Aligned_cols=320  Identities=32%  Similarity=0.524  Sum_probs=287.4

Q ss_pred             CCCCCCCccceEEEEEecCCCCCCCC-CcccccccCHHHHHHHhhccCCeEEeeecCCceeeeeccCceeeeeCCeEEEe
Q 035670           10 ASPIGFEGFEKRLEITFSPAPIFTDP-SGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSESSLFVFPSKIILK   88 (376)
Q Consensus        10 ~s~~~FEG~EKrLEI~F~~~~~~~~~-~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILK   88 (376)
                      +++++|||+||||||||.++.. ..+ +..|||+|||++|++||++|+|+|||+++|+++||||||||||||||+|||||
T Consensus         2 ds~~~FEG~EKrLEI~F~~~~~-~~~~~~~~LR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiIlK   80 (334)
T 1jl0_A            2 EAAHFFEGTEKLLEVWFSRQQP-DANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILK   80 (334)
T ss_dssp             ---CCCCCCCEEEEEEEECCC------CCSCGGGSCHHHHHHHHHTTTCCEEEEEECSSEEEEEECCCCEEEESSEEEEE
T ss_pred             CcCCCCcccceEEEEEEecCCc-cccCCCCccccCCHHHHHHHHHhcCCEEEEeecccccceEEeccceeeEECCEEEEE
Confidence            6899999999999999997531 222 34569999999999999999999999999999999999999999999999999


Q ss_pred             ccCccchhccHHHHHHHHhhc-Cc-eeEEEEEcccccCCCCCCCCCCCChhHHHHHHHHHhCCCCCceEEecCCCCCCCc
Q 035670           89 TCGTTKLLSSIPQILKLSDSL-SL-AVSSVKYSRGSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRN  166 (376)
Q Consensus        89 TCGTTtLL~~l~~ll~la~~~-~~-~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~g~aY~~G~~~~~~~h  166 (376)
                      ||||||||+|||+||++|+++ |+ .|++|+||||||+||++|++||++|+|||++|+++|++  |+||+||++|+  ||
T Consensus        81 TCGTT~LL~~l~~ll~la~~~~g~~~v~~v~YsRknf~fP~~Q~~pH~sf~eEv~~L~~~F~~--G~aY~~G~~~~--~h  156 (334)
T 1jl0_A           81 TCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPN--GAGYCMGRMNS--DC  156 (334)
T ss_dssp             ECTTCCGGGGHHHHHHHHHHHHCCCEEEEEEEEEECCSSGGGCCTTCSSHHHHHHHHHTTCSS--EEEEEESCTTS--SC
T ss_pred             eCCCCcHHHHHHHHHHHHHHhcCccceeEEEEcccCCCCcccCCCccCCHHHHHHHHHHhcCC--CcEEEeCCCCC--Ce
Confidence            999999999999999999765 87 89999999999999999999999999999999999987  89999999996  89


Q ss_pred             EEEEecCCCC---CCCCcceEEEEecCCCHHhhcccccCCCCCCCHHHHHHHhCCccccCCCcccccccCCCcccccCCC
Q 035670          167 WHVYSASKER---SFDGVVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGID  243 (376)
Q Consensus       167 W~ly~~~~~~---~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~~~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~  243 (376)
                      ||||+++.+.   ..++|+|||||||+||+++|++||++++  ++|.+||+.+||++|+|+++||||+|+|||||||||.
T Consensus       157 w~ly~~~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~--~~a~~~t~~sgi~~i~P~~~iddf~F~PCGYSmNgi~  234 (334)
T 1jl0_A          157 WYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDG--VTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMK  234 (334)
T ss_dssp             EEEEEECCC---CCCSCCEEEEEEEESCCHHHHGGGBCBTT--BCHHHHHHHTTCTTSSSSCEEEEEECSSBCEEEEEEC
T ss_pred             eEEEecCCcccccCCCCcceEEEEccCCCHHHHhhhhcCcC--CcHHHHHHHhChhhcCCCcEeeccccCCccceecccc
Confidence            9999998653   4678999999999999999999999988  8999999999999999999999999999999999999


Q ss_pred             C-CceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCeEEEEEEeCCCCc-ccccccCC-CCCcccccce
Q 035670          244 G-PAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQ-WWSMEGAD-VEGYSSETAV  320 (376)
Q Consensus       244 g-~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~v~~~~~~~~~-~~~~~~~~-~~gy~~~~~~  320 (376)
                      + ++|+|||||||++||||||||   |+...++.+||+|||++|+|++|+|+++.+..++ ....+..+ ++||+|+|++
T Consensus       235 ~~~~Y~TIHVTPE~~~SYaSFET---N~~~~~~~~lv~~Vl~~F~P~~fsvt~f~~~~~~~~~~~~~~~~~~gy~~~d~~  311 (334)
T 1jl0_A          235 SDGTYWTIAITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIEGFKRLDCQ  311 (334)
T ss_dssp             TTSCEEEEEEECCTTSCEEEEEE---CCCCSCSHHHHHHHHHHHCCSEEEEEEEEETTCCC-------CCCTTEEEEEEE
T ss_pred             CCCeEEEEEecCCCCCeeEEEEc---CcccccHHHHHHHHHheeCCCeEEEEEEcCCccccchhhhcccCCCCcEeccce
Confidence            5 599999999999999999999   5566689999999999999999999999887654 32333444 8999999999


Q ss_pred             eeeCCCCcEEEEEEEEECCC
Q 035670          321 KQELAGGGCVVYKTYSVDPN  340 (376)
Q Consensus       321 ~~~~~~gy~l~y~~f~~~~~  340 (376)
                      .++|+ ||+|+|++|+|..+
T Consensus       312 ~~~~~-~y~l~y~~f~r~~~  330 (334)
T 1jl0_A          312 SAMFN-DYNFVFTSFAKKQQ  330 (334)
T ss_dssp             EEECS-SEEEEEEEEEECC-
T ss_pred             EEecC-CeEEEEEEEEEccc
Confidence            99999 69999999999874

>1mhm_A Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1

Probab=100.00  E-value=5e-106  Score=777.11  Aligned_cols=282  Identities=54%  Similarity=0.925  Sum_probs=231.0

Q ss_pred             ceeeeeCCeEEEeccCccchhccHHHHHHHHhhcCceeEEEEEcccccCCCCCCCCCCCChhHHHHHHHHHhCCC--CCc
Q 035670           76 SSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFPNYQPSPHCCFSEEVSTLNEHFGYL--NAK  153 (376)
Q Consensus        76 SSLFV~~~kiILKTCGTTtLL~~l~~ll~la~~~~~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~--~g~  153 (376)
                      |||||||+|||||||||||||+|||+||++|+++|++|++|+||||||+||++|++||++|+|||++|+++|+++  +|+
T Consensus         1 SSLFV~~~kiIlKTCGTT~LL~~l~~ll~la~~~g~~v~~v~YsRknf~fP~~Q~~pH~sf~eEV~~L~~~F~~~~~~G~   80 (288)
T 1mhm_A            1 XSLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSK   80 (288)
T ss_dssp             -CEEEETTEEEEEEETTSCGGGGHHHHHHHHHHTTCCEEEEEEEECC-----------CCHHHHHHHHHHHHTTSTTCEE
T ss_pred             CCccccCCEEEEEeCCCccHHHHHHHHHHHHHHcCCceEEEEEecccCCCcccCCCCcCCHHHHHHHHHHHhcccCCCce
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999764  489


Q ss_pred             eEEecCCCCCCCcEEEEecCCCC--CCCCcceEEEEecCCCHHhhcccccCCCCCCCHHHHHHHhCCccccCCCcccccc
Q 035670          154 AHVIGDPKFPNRNWHVYSASKER--SFDGVVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFE  231 (376)
Q Consensus       154 aY~~G~~~~~~~hW~ly~~~~~~--~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~~~~~t~~sgi~~l~p~~~id~f~  231 (376)
                      ||+||++|++ ||||||+++...  ..++|+|||||||+||+++|++||++++  ++|.+||+.+||++|+|+++||||+
T Consensus        81 aY~~G~~~~~-~~W~lY~~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~--~sa~~~t~~sGi~~i~P~~~iddf~  157 (288)
T 1mhm_A           81 AVIMGSPDKT-QKWHVYSASAGSVQSNDPVYTLEMCMTGLDREKASVFYKTEE--SSAAHMTVRSGIRKILPKSEICDFE  157 (288)
T ss_dssp             EEEESSSCSS-CCEEEEEEESCCCCCSSCCCEEEEEEEEECHHHHHTTSCCSS--CCHHHHHHHHTGGGTSTTSEEEEEE
T ss_pred             eEEeCCCCCC-CceEEEeCCCCcccCCCCcceEEEeecCCCHHHHHhhhcccc--ccHHHHHHHhChhhcCCCcEeeccc
Confidence            9999999986 999999987432  4568999999999999999999999887  8999999999999999999999999


Q ss_pred             cCCCcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCeEEEEEEeCCCCc-ccccccCC
Q 035670          232 FDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQ-WWSMEGAD  310 (376)
Q Consensus       232 F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~v~~~~~~~~~-~~~~~~~~  310 (376)
                      |+|||||||||.|++|+|||||||++|||||||||++|.+..++.+||+|||++|+|++|+|+++++..++ .......+
T Consensus       158 F~PCGYSmNgi~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~Vl~~F~P~~fsvt~~~~~~~~~~~~~~~~~  237 (288)
T 1mhm_A          158 FEPCGYSMNSIEGAAVSTIHITPEDGFTYASFESVGYNPKTMELGPLVERVLACFEPAEFSVALHADVATKLLERICSVD  237 (288)
T ss_dssp             CSSSCEEEEEEETTEEEEEEEECCTTSCEEEEEEESCCTTTSCHHHHHHHHHHHHCEEEEEEEEEESSCHHHHHHHHCCC
T ss_pred             cCCccceeccccCCceEEEEeCCCCCCeeEEEEecCCCcccccHHHHHHHHHheeCCCEEEEEEEecccchhhhhhccCC
Confidence            99999999999999999999999999999999999988887899999999999999999999998886544 22223357


Q ss_pred             CCCcccccceeeeCCCCcEEEEEEEEECCCCcCCCCCCCC-CCccccchhhhhccc
Q 035670          311 VEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPK-VPKHCWKEVAAEEES  365 (376)
Q Consensus       311 ~~gy~~~~~~~~~~~~gy~l~y~~f~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~  365 (376)
                      ++||+|.|++.++|++||+|+|.+|+|..  .||   ||| +||+||+++++|+++
T Consensus       238 ~~gy~~~~~~~~~l~~gy~l~y~~f~~~~--~~~---~p~~~~~~~~~~~~~~~~~  288 (288)
T 1mhm_A          238 VKGYSLAEWSPEEFGEGGSIVYQKFTRTP--YCE---SPKSVLKGCWKEEEKEGKE  288 (288)
T ss_dssp             CTTEEEEEEEEEECGGGCEEEEEEEEEC----------------------------
T ss_pred             cCCCeEcccEEEECCCCcEEEEEEEeccC--CCC---CCcchhhhhhcccccccCC
Confidence            89999999999999999999999999976  467   999 999999999888764

>1mhm_B Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1

Probab=99.96  E-value=1.2e-29  Score=199.56  Aligned_cols=71  Identities=58%  Similarity=0.891  Sum_probs=51.9

Q ss_pred             CCCCCCCCCCCCccceEEEEEecCCCCCCCCCcccccccCHHHHHHHhhccCCeEEeeecCCceeeeeccC
Q 035670            5 SSPPVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSE   75 (376)
Q Consensus         5 ~~~~~~s~~~FEG~EKrLEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSE   75 (376)
                      .|.+++++.+|||+||||||||.+++.+.++++.|||+|||++|++||+.|+|+|||+++|+++|||||||
T Consensus         2 ~~~~~~s~~~FEG~EK~LEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSE   72 (72)
T 1mhm_B            2 EMDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVLSE   72 (72)
T ss_dssp             -------------CEEEEEEEECCCCCC----CCCGGGCCHHHHHHHHHHHTCEEEEEEECSSCEEEEEEC
T ss_pred             CcccCCCCCCcccceEEEEEEEecCCccCCCCcCccccCCHHHHHHHHhhcCCEEEEEecCCcceeEEecC
Confidence            36788999999999999999999876556678899999999999999999999999999999999999998

>1vr7_A Adometdc, samdc, S-adenosylmethionine decarboxylase proenzyme; TM0655, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.156.1.2 PDB: 1tlu_A 1tmi_A 3iwc_A* 3iwb_A* 3iwd_A* 3iwc_B* 3iwb_B* 3iwd_B*

Probab=93.97  E-value=0.063  Score=46.93  Aligned_cols=102  Identities=18%  Similarity=0.114  Sum_probs=69.5

Q ss_pred             EEEEecCCCHHhhcccccCCCC-CCCHHHHHHHhCCccccCCCcccccccCCCcccccCCCCCceEEEEecCCCCCeEEE
Q 035670          184 LEMCMTGLDRKKAAVFYKSSSG-PGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYAS  262 (376)
Q Consensus       184 lEilMt~Ld~~~a~~F~~~~~~-~~~~~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaS  262 (376)
                      +=+=+|+-+++...    +... ...-.+..+..|..-+    .+.-+.|+|=|+|.=+|..+...+||.=||.+  ||+
T Consensus        20 li~DlygC~~~~L~----D~e~l~~~l~eAa~~~gatvl----~~~~h~F~P~GvSgvvllaESHIsIHTwPE~g--yAa   89 (142)
T 1vr7_A           20 LVAEFYECDREVLD----NVQLIEQEMKQAAYESGATIV----TSTFHRFLPYGVSGVVVISESHLTIHTWPEYG--YAA   89 (142)
T ss_dssp             EEEEEESCCHHHHT----CHHHHHHHHHHHHHHHTCCEE----EEEEEECSSSCEEEEEEETTEEEEEEEEGGGT--EEE
T ss_pred             EEEEEcCCChHHCC----CHHHHHHHHHHHHHHcCCEEe----EEEEEEcCCCCeEEEEEecccEEEEEeCCCCC--eEE
Confidence            33445677766533    1110 0122334555555433    34568899999999999999999999999999  566


Q ss_pred             EEecCCCCCcCCHHHHHHHHhhccCCCeEEEEEE
Q 035670          263 YEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVT  296 (376)
Q Consensus       263 FETn~~~~~~~~~~~li~~VL~~F~P~~f~v~~~  296 (376)
                      ...--++ ...++...++-+.+.|+|.+..+...
T Consensus        90 vDVftCg-~~~~P~~a~~~L~~~f~a~~~~~~~~  122 (142)
T 1vr7_A           90 IDLFTCG-EDVDPWKAFEHLKKALKAKRVHVVEH  122 (142)
T ss_dssp             EEEEEES-TTCCHHHHHHHHHHHHTCSEEEEEEE
T ss_pred             EEEEccC-CCCCHHHHHHHHHHHhCCCeEEEEEE
Confidence            6652112 22478899999999999999998733

>2iii_A S-adenosylmethionine decarboxylase proenzyme; two-layer alpha beta-sandwich, structural genomics, NPPSFA; 2.30A {Aquifex aeolicus}

Probab=93.04  E-value=0.062  Score=46.51  Aligned_cols=79  Identities=15%  Similarity=0.260  Sum_probs=58.4

Q ss_pred             HHHHHhCCccccCCCcccccccCCCcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCe
Q 035670          211 EMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPRE  290 (376)
Q Consensus       211 ~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~  290 (376)
                      +..+..|..-+-    +.-+.|+|=|+|.=+|..+...+||.=||.+  ||+...--++ ...++...++-+.+.|+|.+
T Consensus        33 ~aa~~~gatvl~----~~~h~F~P~GvSgvvllaESHisIHTwPE~g--yaavDvftCg-~~~~P~~a~~~l~~~f~a~~  105 (135)
T 2iii_A           33 GAVKYANLTKIS----SHYYQFQPHGATGVVLLAESHISIHTWPEHG--LATVDVYTCG-DPSKAYRAMDYIITQLNPKR  105 (135)
T ss_dssp             HHHHHTTCCEEE----EEEEECSSSCEEEEEEEC-CEEEEEEEGGGT--EEEEEEEEES-CHHHHHHHHHHHHHHHCCSE
T ss_pred             HHHHHcCCEEEE----EEEEEcCCCCeEEEEEecccEEEEEeCCCCC--cEEEEEEccC-CCCCHHHHHHHHHHHhCCCe
Confidence            344555554432    4568899999999999999999999999999  5666552111 12368889999999999999


Q ss_pred             EEEEEE
Q 035670          291 FSVAVT  296 (376)
Q Consensus       291 f~v~~~  296 (376)
                      ..+...
T Consensus       106 ~~~~~~  111 (135)
T 2iii_A          106 IDKQVH  111 (135)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            998733

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	376
g1mhm.1	323	d.156.1.1 (B:,A:) S-adenosylmethionine decarboxyla	1e-131
d1jl0a_	325	d.156.1.1 (A:) S-adenosylmethionine decarboxylase	1e-121

>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: S-adenosylmethionine decarboxylase
superfamily: S-adenosylmethionine decarboxylase
family: S-adenosylmethionine decarboxylase
domain: S-adenosylmethionine decarboxylase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  352 bits (904), Expect = e-121
 Identities = 104/330 (31%), Positives = 165/330 (50%), Gaps = 18/330 (5%)

Query: 15  FEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLS 74
           FEG EK LE+ FS      +     LR + RS+ D  L   +C+I+S     + ++YVLS
Sbjct: 3   FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLS 62

Query: 75  ESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLS--LAVSSVKYSRGSFIFPNYQPSP 132
           ESS+FV   + ILKTCGTT LL ++  +LKL+   S   ++ S  YSR +F+ P++Q  P
Sbjct: 63  ESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYP 122

Query: 133 HCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSF---DGVVTLEMCMT 189
           H  F EE+  LN  F   N   + +G     +  W++Y+     S        TLE+ M+
Sbjct: 123 HRNFQEEIEFLNAIFP--NGAGYCMGRMN--SDCWYLYTLDFPESRVISQPDQTLEILMS 178

Query: 190 GLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPA-FS 248
            LD      FY        A ++T+ SGI +++P  VI    F+PCGYSMNG+     + 
Sbjct: 179 ELDPAVMDQFYMKDG--VTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYW 236

Query: 249 TVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQWWS--M 306
           T+ +TPE  FSY S+E    +L    ++ L+++V+  F P +F   +     ++  +   
Sbjct: 237 TIAITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLA 293

Query: 307 EGADVEGYSSETAVKQELAGGGCVVYKTYS 336
               +EG+                V+ +++
Sbjct: 294 SPQKIEGFKRLDCQSAMF-NDYNFVFTSFA 322

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	376
d1jl0a_	325	S-adenosylmethionine decarboxylase {Human (Homo sa	100.0
g1mhm.1	323	S-adenosylmethionine decarboxylase {Potato (Solanu	100.0
d1vr7a1	117	S-adenosylmethionine decarboxylase (SamDC, SpeH) {	95.86

>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: S-adenosylmethionine decarboxylase
superfamily: S-adenosylmethionine decarboxylase
family: S-adenosylmethionine decarboxylase
domain: S-adenosylmethionine decarboxylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-122  Score=902.08  Aligned_cols=317  Identities=32%  Similarity=0.516  Sum_probs=290.0

Q ss_pred             CCCCccceEEEEEecCCCCCCCCCcccccccCHHHHHHHhhccCCeEEeeecCCceeeeeccCceeeeeCCeEEEeccCc
Q 035670           13 IGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSESSLFVFPSKIILKTCGT   92 (376)
Q Consensus        13 ~~FEG~EKrLEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTCGT   92 (376)
                      .||||+||||||||.++....++.+.|||+|||++|++||++|+|+|||+++|++|||||||||||||||||||||||||
T Consensus         1 ~fFEG~EK~LEi~F~~~~~~~~~~~~~LR~i~~~~w~~~L~~a~c~IlS~~sn~~~DAYlLSESSLFV~~~kiiLkTCGT   80 (325)
T d1jl0a_           1 HFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGT   80 (325)
T ss_dssp             CCCCCCCEEEEEEEECCC-----CCSCGGGSCHHHHHHHHHTTTCCEEEEEECSSEEEEEECCCCEEEESSEEEEEECTT
T ss_pred             CCCCccceEEEEEEccCCCCCCCCCCCcccCCHHHHHHHHHhcCCEEEEeecccccceEEeechhhheeCCeEEEEECCC
Confidence            48999999999999987666677788999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhccHHHHHHHHhhcC--ceeEEEEEcccccCCCCCCCCCCCChhHHHHHHHHHhCCCCCceEEecCCCCCCCcEEEE
Q 035670           93 TKLLSSIPQILKLSDSLS--LAVSSVKYSRGSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVY  170 (376)
Q Consensus        93 TtLL~~l~~ll~la~~~~--~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~g~aY~~G~~~~~~~hW~ly  170 (376)
                      ||||+|||+||++|++++  ..|++|+||||||+||++|++||++|+|||++|+++|++  |+||++|++|+  ||||||
T Consensus        81 TtLL~~l~~ll~la~~~~g~~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~f~~--G~aY~~G~~~~--~hw~ly  156 (325)
T d1jl0a_          81 TLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPN--GAGYCMGRMNS--DCWYLY  156 (325)
T ss_dssp             CCGGGGHHHHHHHHHHHHCCCEEEEEEEEEECCSSGGGCCTTCSSHHHHHHHHHTTCSS--EEEEEESCTTS--SCEEEE
T ss_pred             ccHHHHHHHHHHHHHHhcCccceeEEEEecccCcCcccCCcccCCHHHHHHHHHHhCCC--CceEEecCCCC--CeEEEE
Confidence            999999999999999875  589999999999999999999999999999999999986  89999999996  899999


Q ss_pred             ecCCCC---CCCCcceEEEEecCCCHHhhcccccCCCCCCCHHHHHHHhCCccccCCCcccccccCCCcccccCCCCC-c
Q 035670          171 SASKER---SFDGVVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGP-A  246 (376)
Q Consensus       171 ~~~~~~---~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~~~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~g~-~  246 (376)
                      +++.+.   ..++|+|||||||+||+++|++||++++  ++|.+||+.+||++|+|++.||||+|+|||||||||.|+ .
T Consensus       157 ~~~~~~~~~~~~~d~TlEilMt~Ld~~~a~~f~~~~~--~~~~~~t~~~gi~~l~p~~~id~f~F~PCGYS~N~i~~~~~  234 (325)
T d1jl0a_         157 TLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDG--VTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGT  234 (325)
T ss_dssp             EECCC---CCCSCCEEEEEEEESCCHHHHGGGBCBTT--BCHHHHHHHTTCTTSSSSCEEEEEECSSBCEEEEEECTTSC
T ss_pred             ecCCcccccCCCCceeeeehhcCCChHHHhhhhccCC--CCHHHHHHhcChhhhCCCcEeecccCCCccceeeeecCCCc
Confidence            998554   6789999999999999999999999988  899999999999999999999999999999999999997 5


Q ss_pred             eEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCeEEEEEEeCCCCc-ccc-cccCCCCCcccccceeeeC
Q 035670          247 FSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQ-WWS-MEGADVEGYSSETAVKQEL  324 (376)
Q Consensus       247 Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~v~~~~~~~~~-~~~-~~~~~~~gy~~~~~~~~~~  324 (376)
                      |+|||||||++||||||||   |++..++.++|+|||++|+|++|+||++.+.+++ ... ....+++||+|+|++.++|
T Consensus       235 Y~TiHVTPE~~~SYaSFET---N~~~~~~~~li~~vl~~F~P~~f~vt~f~~~~~~~~~~~~~~~~~~gY~~~d~~~~~~  311 (325)
T d1jl0a_         235 YWTIAITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIEGFKRLDCQSAMF  311 (325)
T ss_dssp             EEEEEEECCTTSCEEEEEE---CCCCSCSHHHHHHHHHHHCCSEEEEEEEEETTCCC-------CCCTTEEEEEEEEEEC
T ss_pred             EEEEEECCCCCceeEEEec---CcchhhHHHHHHHHHhhcCCceEEEEEEecCCchhhhhhhcccCCCCcceeeeEEEEc
Confidence            9999999999999999999   5567789999999999999999999999887655 222 2234689999999999999


Q ss_pred             CCCcEEEEEEEEECC
Q 035670          325 AGGGCVVYKTYSVDP  339 (376)
Q Consensus       325 ~~gy~l~y~~f~~~~  339 (376)
                      + ||+|+|.+|+|++
T Consensus       312 ~-gy~l~y~~y~r~~  325 (325)
T d1jl0a_         312 N-DYNFVFTSFAKKQ  325 (325)
T ss_dssp             S-SEEEEEEEEEECC
T ss_pred             C-CeEEEEEEEEecC
Confidence            8 7999999999874

>d1vr7a1 d.156.1.2 (A:2-118) S-adenosylmethionine decarboxylase (SamDC, SpeH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: S-adenosylmethionine decarboxylase
superfamily: S-adenosylmethionine decarboxylase
family: Bacterial S-adenosylmethionine decarboxylase
domain: S-adenosylmethionine decarboxylase (SamDC, SpeH)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.86  E-value=0.0054  Score=49.44  Aligned_cols=75  Identities=23%  Similarity=0.235  Sum_probs=58.0

Q ss_pred             HHHHhCCccccCCCcccccccCCCcccccCCCCCceEEEEecCCCCCeEEEEEe--cCCCCCcCCHHHHHHHHhhccCCC
Q 035670          212 MTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEA--AGFDLRLVRFEPLVKRVLNSFAPR  289 (376)
Q Consensus       212 ~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaSFET--n~~~~~~~~~~~li~~VL~~F~P~  289 (376)
                      +.+..|..-+    .+..+.|+|-|+|+-.+..+...+||+=||.+  ||.+..  +|-+   .++..+++.+.+.|+|.
T Consensus        32 ~~~~~~~tvl----~~~~~~f~p~G~T~~~ll~eSHisiHTwPE~g--~~~iDifsC~~~---~~~~~~~~~l~~~f~~~  102 (117)
T d1vr7a1          32 AAYESGATIV----TSTFHRFLPYGVSGVVVISESHLTIHTWPEYG--YAAIDLFTCGED---VDPWKAFEHLKKALKAK  102 (117)
T ss_dssp             HHHHHTCCEE----EEEEEECSSSCEEEEEEETTEEEEEEEEGGGT--EEEEEEEEESTT---CCHHHHHHHHHHHHTCS
T ss_pred             HHHHcCCEEE----eEEeEEecCCcEEEEEEecccEEEEEEcCCCc--eEEEEEEeCCCC---CCHHHHHHHHHHHhCCC
Confidence            4455555433    24567899999999999999999999999987  455554  3322   36889999999999999


Q ss_pred             eEEEEE
Q 035670          290 EFSVAV  295 (376)
Q Consensus       290 ~f~v~~  295 (376)
                      +..+..
T Consensus       103 ~~~~~~  108 (117)
T d1vr7a1         103 RVHVVE  108 (117)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            998863