Citrus Sinensis ID: 035679

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MALSKSLTGSFLIISLVIHVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccccccccccccHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
malsksltgsFLIISLVIHVFQLAQSDGLMVIKSvaespmpqkiegywfahdsdcdgacaarcqlssrprlckracgtccarcdcvppgtsgnydacpcyanmtthggrhkcp
Flexible Loop (DISEMBL)
MALSKSLTGSFLIISLVIHVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP
Low Complexity Region (SEG)
MALSKSLTGSFLIISLVIHVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP
Disordered region (IsUnstruct)
*******TGSFLIISLVIHVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMT*********
Disordered Region (DISOPRED)
***SKSLTGSFLIISLVIHVFQLAQS****************************CDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTH*******
Disordered Region (DISEMBL)
MALSKSLTGSFLIISLVIHVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMT*********
Disordered Region (DISPRO)
MALSKSLTGSFLIISLVIHVFQLAQSDGLMVIKS*AESPMP******WFAHDSDCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTT******C*
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALSKSLTGSFLIISLVIHVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	113	2.2.26 [Sep-21-2011]
Q93X17	104	Snakin-2 OS=Solanum tuber	N/A	no	0.920	1.0	0.557	8e-25
P46689	98	Gibberellin-regulated pro	yes	no	0.672	0.775	0.666	1e-22
F4IQJ4	94	Gibberellin-regulated pro	no	no	0.530	0.638	0.75	8e-21
P46687	99	Gibberellin-regulated pro	no	no	0.530	0.606	0.666	2e-17
Q8GWK5	119	Gibberellin-regulated pro	no	no	0.955	0.907	0.422	4e-17
Q9LFR3	275	Gibberellin-regulated pro	no	no	0.530	0.218	0.590	8e-13
P46688	99	Gibberellin-regulated pro	no	no	0.530	0.606	0.683	8e-12
P47926	96	Protein RSI-1 OS=Solanum	N/A	no	0.619	0.729	0.442	2e-10
Q6NMQ7	101	Gibberellin-regulated pro	no	no	0.876	0.980	0.361	2e-10
O80641	87	Gibberellin-regulated pro	no	no	0.752	0.977	0.364	5e-10

>sp|Q93X17|SNAK2_SOLTU Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1

 Score =  112 bits (279), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 77/113 (68%), Gaps = 9/113 (7%)

Query: 1   MALSKSLTGSFLIISLVIHVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACA 60
           MA+SK+L  S L+  L++   Q  Q+D    + S A S      E  +     DC GACA
Sbjct: 1   MAISKALFASLLLSLLLLEQVQSIQTDQ---VTSNAIS------EAAYSYKKIDCGGACA 51

Query: 61  ARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
           ARC+LSSRPRLC RACGTCCARC+CVPPGTSGN + CPCYA++TTHG + KCP
Sbjct: 52  ARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104

Has an antimicrobial activity. Causes a rapid aggregation of both Gram-positive and Gram-negative bacteria, but the antimicrobial activity is not correlated with the capacity to aggregate bacteria.
Solanum tuberosum (taxid: 4113)

>sp|P46689|GASA1_ARATH Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=2 SV=2

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/78 (66%), Positives = 57/78 (73%), Gaps = 2/78 (2%)

Query: 36  AESPMPQKIEGYWFAHDSDCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYD 95
           A+    QK  GY  A   DC  AC ARC+LS RPRLC RACGTCC RC+CVPPGT GNYD
Sbjct: 23  ADVENSQKKNGY--AKKIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYD 80

Query: 96  ACPCYANMTTHGGRHKCP 113
            C CYA++TTHGGR KCP
Sbjct: 81  KCQCYASLTTHGGRRKCP 98

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|F4IQJ4|GASAB_ARATH Gibberellin-regulated protein 11 OS=Arabidopsis thaliana GN=GASA11 PE=3 SV=1

 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 49/60 (81%)

Query: 54  DCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
           DC+  C  RC LSSRP LC RACGTCCARC+CV PGTSGNYD CPCY ++TTHGGR KCP
Sbjct: 35  DCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P46687|GASA3_ARATH Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 46/60 (76%)

Query: 54  DCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
           DC G C  RC  SSRP LC RAC +CC RC+CVPPGT+GN+  CPCYA++TT GGR KCP
Sbjct: 40  DCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWK5|GASA9_ARATH Gibberellin-regulated protein 9 OS=Arabidopsis thaliana GN=GASA9 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 67/109 (61%), Gaps = 1/109 (0%)

Query: 6   SLTGSFLIISLVI-HVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACAARCQ 64
           +L  SFL++S V+  +   + ++   V ++  E+        Y      +C  ACA RC 
Sbjct: 11  TLIISFLLLSQVLAELSSSSNNETSSVSQTNDENQTAAFKRTYHHRPRINCGHACARRCS 70

Query: 65  LSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
            +SR ++C RACG+CCA+C CVPPGTSGN  +CPCYA++ THG + KCP
Sbjct: 71  KTSRKKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRTHGNKLKCP 119

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFR3|GASAE_ARATH Gibberellin-regulated protein 14 OS=Arabidopsis thaliana GN=GASA14 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 54  DCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDAC-PCYANMTTHGGRHKC 112
           DC   C  RC   SR  +C RAC TCC RC CVPPGT GN + C  CYANM T GG+ KC
Sbjct: 215 DCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKSKC 274

Query: 113 P 113
           P
Sbjct: 275 P 275

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P46688|GASA2_ARATH Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 47/60 (78%)

Query: 54  DCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
           DC G C  RC  SSR +LC RAC +CC+RC+CVPPGTSGN   CPCYA++TTHGGR KCP
Sbjct: 40  DCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P47926|RSI1_SOLLC Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 37/70 (52%)

Query: 44  IEGYWFAHDSDCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANM 103
           +EGY     +DC   C  RC  +S  + C   C  CCA C CVP G  GN  +CPCY N 
Sbjct: 27  VEGYNKLRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNW 86

Query: 104 TTHGGRHKCP 113
            T  G+ KCP
Sbjct: 87  KTQEGKPKCP 96

Solanum lycopersicum (taxid: 4081)

>sp|Q6NMQ7|GASA6_ARATH Gibberellin-regulated protein 6 OS=Arabidopsis thaliana GN=GASA6 PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 50/108 (46%), Gaps = 9/108 (8%)

Query: 6   SLTGSFLIISLVIHVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACAARCQL 65
            L  SFL+++++     L  S      +   ES  P  ++ Y       C G C  RC  
Sbjct: 3   KLITSFLLLTILFTFVCLTMSKE---AEYHPESYGPGSLKSY------QCGGQCTRRCSN 53

Query: 66  SSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
           +   + C   C  CCA+C CVPPGT GN   CPCY N  T  G  KCP
Sbjct: 54  TKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|O80641|GASA8_ARATH Gibberellin-regulated protein 8 OS=Arabidopsis thaliana GN=At2g39540 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 43/85 (50%)

Query: 29  LMVIKSVAESPMPQKIEGYWFAHDSDCDGACAARCQLSSRPRLCKRACGTCCARCDCVPP 88
           L+V++    S +         + DS C G C  RC  + +   C + C  CC +C+CVP 
Sbjct: 3   LVVVQFFIISLLLTSSFSVLSSADSSCGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPS 62

Query: 89  GTSGNYDACPCYANMTTHGGRHKCP 113
           GT G+ D CPCY +M    G  KCP
Sbjct: 63  GTFGHKDECPCYRDMKNSKGGSKCP 87

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
255538930	96	Gibberellin-regulated protein 1 precurso	0.849	1.0	0.628	4e-29
209967463	102	GAST-like protein [Populus euphratica]	0.902	1.0	0.601	5e-28
449437208	100	PREDICTED: gibberellin-regulated protein	0.858	0.97	0.575	1e-27
224085866	98	predicted protein [Populus trichocarpa]	0.858	0.989	0.631	1e-27
224085870	102	predicted protein [Populus trichocarpa]	0.902	1.0	0.584	3e-27
449505756	100	PREDICTED: gibberellin-regulated protein	0.858	0.97	0.566	8e-27
257815602	103	gast1-like protein [Jatropha curcas]	0.911	1.0	0.566	6e-26
449437204	102	PREDICTED: snakin-2-like [Cucumis sativu	0.902	1.0	0.566	3e-25
255710053	103	cold-regulated LTCOR12 [Jatropha curcas]	0.911	1.0	0.566	6e-25
224085874	103	predicted protein [Populus trichocarpa]	0.911	1.0	0.566	8e-25

>gi|255538930|ref|XP_002510530.1| Gibberellin-regulated protein 1 precursor, putative [Ricinus communis] gi|223551231|gb|EEF52717.1| Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/113 (62%), Positives = 79/113 (69%), Gaps = 17/113 (15%)

Query: 1   MALSKSLTGSFLIISLVIHVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACA 60
           MA+ K+L    L ++ V+H   L QS+ ++ IK V E P  QKI             ACA
Sbjct: 1   MAIFKTLLFVILPLAFVLH---LVQSNPVL-IKDVVEIPPLQKI-------------ACA 43

Query: 61  ARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
           ARCQLSSRP LCKRACGTCC RCDCVPPGTSGNYD CPCYANMTTHGGRHKCP
Sbjct: 44  ARCQLSSRPHLCKRACGTCCVRCDCVPPGTSGNYDVCPCYANMTTHGGRHKCP 96

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209967463|gb|ACJ02356.1| GAST-like protein [Populus euphratica]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 79/113 (69%), Gaps = 11/113 (9%)

Query: 1   MALSKSLTGSFLIISLVIHVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACA 60
           MA+   L  + L  SL+  V QLA++D   V  ++A S  P KI         DC  AC 
Sbjct: 1   MAMITKLLIALLCFSLL--VLQLAEADHDTVSSNLAASSPPTKI---------DCGSACE 49

Query: 61  ARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
           ARCQLSSRPRLCKRACGTCC+RC CVPPGT+GNYDACPCYA++TTHGGR KCP
Sbjct: 50  ARCQLSSRPRLCKRACGTCCSRCSCVPPGTAGNYDACPCYASLTTHGGRRKCP 102

Source: Populus euphratica

Species: Populus euphratica

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437208|ref|XP_004136384.1| PREDICTED: gibberellin-regulated protein 1-like [Cucumis sativus]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 73/106 (68%), Gaps = 9/106 (8%)

Query: 8   TGSFLIISLVIHVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACAARCQLSS 67
           T   + + L+I    L    G MVI +  ++P+PQ I         DC  AC ARC+LSS
Sbjct: 4   TKGLMFVLLLIAFAMLLMESGQMVITTQVDNPLPQDI---------DCGEACDARCRLSS 54

Query: 68  RPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
           R ++C+RACGTCC+RC CVPPGTSGNYD CPCYANMTTHGGRHKCP
Sbjct: 55  RQKICERACGTCCSRCQCVPPGTSGNYDFCPCYANMTTHGGRHKCP 100

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085866|ref|XP_002307719.1| predicted protein [Populus trichocarpa] gi|222857168|gb|EEE94715.1| predicted protein [Populus trichocarpa]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/114 (63%), Positives = 78/114 (68%), Gaps = 17/114 (14%)

Query: 1   MALSKSLTGSFLIISLVIHVFQLAQSDGLMVIKSVAES-PMPQKIEGYWFAHDSDCDGAC 59
           MA+ K+L      + LV  VF LA SD  MVIKS+ ES P PQ           DC  AC
Sbjct: 1   MAIFKTLAA----VLLVGIVFSLAVSD--MVIKSLVESDPAPQI----------DCASAC 44

Query: 60  AARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
           A RCQLSSRP LC RACGTCCARC+CVPPGTSGNYD CPCY NMTTH G+HKCP
Sbjct: 45  AVRCQLSSRPNLCHRACGTCCARCNCVPPGTSGNYDVCPCYGNMTTHHGQHKCP 98

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085870|ref|XP_002307720.1| predicted protein [Populus trichocarpa] gi|222857169|gb|EEE94716.1| predicted protein [Populus trichocarpa]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/113 (58%), Positives = 77/113 (68%), Gaps = 11/113 (9%)

Query: 1   MALSKSLTGSFLIISLVIHVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACA 60
           MA+      + L  SL+  V  LA++D   V  ++A S  P KI         DC  AC 
Sbjct: 1   MAMITKFLIALLFFSLL--VLHLAEADHDTVNSNLAASSPPTKI---------DCGSACE 49

Query: 61  ARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
           ARCQLSSRPRLCKRACGTCC+RC CVPPGT+GNYDACPCYA++TTHGGR KCP
Sbjct: 50  ARCQLSSRPRLCKRACGTCCSRCSCVPPGTAGNYDACPCYASLTTHGGRRKCP 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505756|ref|XP_004162561.1| PREDICTED: gibberellin-regulated protein 1-like [Cucumis sativus]

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 72/106 (67%), Gaps = 9/106 (8%)

Query: 8   TGSFLIISLVIHVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACAARCQLSS 67
           T   + + L+I    L    G MV  +  ++P+PQ I         DC  AC ARC+LSS
Sbjct: 4   TKGLMFVLLLIAFAMLLMESGQMVNTTQVDNPLPQDI---------DCGEACDARCRLSS 54

Query: 68  RPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
           R ++C+RACGTCC+RC CVPPGTSGNYD CPCYANMTTHGGRHKCP
Sbjct: 55  RQKICERACGTCCSRCQCVPPGTSGNYDFCPCYANMTTHGGRHKCP 100

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|257815602|gb|ACV70139.1| gast1-like protein [Jatropha curcas]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 77/113 (68%), Gaps = 10/113 (8%)

Query: 1   MALSKSLTGSFLIISLVIHVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACA 60
           MA SK L  S L+ISL+  +   A++D   V   +  +  P        A + DC  AC 
Sbjct: 1   MAFSKLLIAS-LVISLLF-LLHFAEADHQTVKSKLDATNSP--------AEEIDCGSACT 50

Query: 61  ARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
           ARCQLSSRP LC+RACGTCCARC CVPPGT+GNY+ACPCYA++TTHGGR KCP
Sbjct: 51  ARCQLSSRPNLCERACGTCCARCKCVPPGTAGNYEACPCYASLTTHGGRRKCP 103

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437204|ref|XP_004136382.1| PREDICTED: snakin-2-like [Cucumis sativus] gi|449505754|ref|XP_004162560.1| PREDICTED: snakin-2-like [Cucumis sativus]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 76/113 (67%), Gaps = 11/113 (9%)

Query: 1   MALSKSLTGSFLIISLVIHVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACA 60
           MAL K +    L  SL++  F   ++D  MV+   A SP   +        + DC GACA
Sbjct: 1   MALPKIIV-CLLASSLLVLCF--VEADDQMVVGVAASSPTKTQ--------NIDCGGACA 49

Query: 61  ARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
           +RC+LSSRP LC RACGTCCARC CVPPGTSGNY+ACPCYA +TTHGGR KCP
Sbjct: 50  SRCKLSSRPNLCHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 102

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255710053|gb|ACU30848.1| cold-regulated LTCOR12 [Jatropha curcas]

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 76/113 (67%), Gaps = 10/113 (8%)

Query: 1   MALSKSLTGSFLIISLVIHVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACA 60
           MA SK L  S +I  L++  F  A++D   V   +  +  P        A + DC  AC 
Sbjct: 1   MAFSKLLIASLVISLLLLLHF--AEADHQTVKSKLDATNSP--------AEEIDCGSACT 50

Query: 61  ARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
           ARCQLSSRP LCKRACGTCCARC CVPPGT+GNY+ACPCYA++TTHGGR KCP
Sbjct: 51  ARCQLSSRPNLCKRACGTCCARCKCVPPGTAGNYEACPCYASLTTHGGRRKCP 103

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085874|ref|XP_002307722.1| predicted protein [Populus trichocarpa] gi|222857171|gb|EEE94718.1| predicted protein [Populus trichocarpa]

 Score =  117 bits (293), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 76/113 (67%), Gaps = 10/113 (8%)

Query: 1   MALSKSLTGSFLIISLVIHVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACA 60
           MA+SK L   FL+ SL+  V +L ++D  +V  ++  +  P          + DC GAC 
Sbjct: 1   MAISKLLI-VFLVASLL--VLRLVEADQKVVNSNIQAASYPP-------GKNIDCGGACN 50

Query: 61  ARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
           ARC LSSRPRLCKRACGTCCARC CVPPGTSGN+  CPCYA MTT GGR KCP
Sbjct: 51  ARCSLSSRPRLCKRACGTCCARCKCVPPGTSGNHYTCPCYATMTTRGGRLKCP 103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
TAIR|locus:2005634	98	GASA1 "AT1G75750" [Arabidopsis	0.867	1.0	0.601	4.4e-29
TAIR|locus:2062175	94	AT2G18420 "AT2G18420" [Arabido	0.530	0.638	0.75	2.9e-25
TAIR|locus:2136897	99	GASA2 "AT4G09610" [Arabidopsis	0.530	0.606	0.683	5.5e-22
TAIR|locus:2136892	99	GASA3 "AT4G09600" [Arabidopsis	0.530	0.606	0.666	9e-22
TAIR|locus:2199645	119	AT1G22690 "AT1G22690" [Arabido	0.920	0.873	0.428	1.3e-20
TAIR|locus:2147810	275	GASA14 "AT5G14920" [Arabidopsi	0.530	0.218	0.590	6.7e-17
TAIR|locus:2052876	106	AT2G30810 [Arabidopsis thalian	0.867	0.924	0.376	1.8e-14
TAIR|locus:2039732	87	AT2G39540 [Arabidopsis thalian	0.548	0.712	0.451	1e-13
TAIR|locus:505006327	97	GASA5 "GAST1 protein homolog 5	0.734	0.855	0.411	1e-13
TAIR|locus:2019195	101	GASA6 "AT1G74670" [Arabidopsis	0.893	1.0	0.360	1.6e-13

TAIR|locus:2005634 GASA1 "AT1G75750" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 68/113 (60%), Positives = 77/113 (68%)

Query:     1 MALSKSLTGSFLIISLVIHVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACA 60
             MA+SK+L  S L+ISL+  V QL Q+D       V  S   QK  GY  A   DC  AC 
Sbjct:     1 MAISKALIAS-LLISLL--VLQLVQAD-------VENS---QKKNGY--AKKIDCGSACV 45

Query:    61 ARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
             ARC+LS RPRLC RACGTCC RC+CVPPGT GNYD C CYA++TTHGGR KCP
Sbjct:    46 ARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009739 "response to gibberellin stimulus" evidence=IMP;IDA

GO:0009741 "response to brassinosteroid stimulus" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2062175 AT2G18420 "AT2G18420" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 45/60 (75%), Positives = 49/60 (81%)

Query:    54 DCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
             DC+  C  RC LSSRP LC RACGTCCARC+CV PGTSGNYD CPCY ++TTHGGR KCP
Sbjct:    35 DCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2136897 GASA2 "AT4G09610" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 41/60 (68%), Positives = 47/60 (78%)

Query:    54 DCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
             DC G C  RC  SSR +LC RAC +CC+RC+CVPPGTSGN   CPCYA++TTHGGR KCP
Sbjct:    40 DCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2136892 GASA3 "AT4G09600" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 40/60 (66%), Positives = 46/60 (76%)

Query:    54 DCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
             DC G C  RC  SSRP LC RAC +CC RC+CVPPGT+GN+  CPCYA++TT GGR KCP
Sbjct:    40 DCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS;TAS

TAIR|locus:2199645 AT1G22690 "AT1G22690" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 45/105 (42%), Positives = 65/105 (61%)

Query:    10 SFLIISLVI-HVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACAARCQLSSR 68
             SFL++S V+  +   + ++   V ++  E+        Y      +C  ACA RC  +SR
Sbjct:    15 SFLLLSQVLAELSSSSNNETSSVSQTNDENQTAAFKRTYHHRPRINCGHACARRCSKTSR 74

Query:    69 PRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
              ++C RACG+CCA+C CVPPGTSGN  +CPCYA++ THG + KCP
Sbjct:    75 KKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRTHGNKLKCP 119

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2147810 GASA14 "AT5G14920" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 36/61 (59%), Positives = 39/61 (63%)

Query:    54 DCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDAC-PCYANMTTHGGRHKC 112
             DC   C  RC   SR  +C RAC TCC RC CVPPGT GN + C  CYANM T GG+ KC
Sbjct:   215 DCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKSKC 274

Query:   113 P 113
             P
Sbjct:   275 P 275

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2052876 AT2G30810 [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 38/101 (37%), Positives = 51/101 (50%)

Query:    13 IISLVIHVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACAARCQLSSRPRLC 72
             +IS ++   Q +  D L   +S A++P   K  G       +C  AC  RC  +S  + C
Sbjct:     9 VISSLLFATQFSNGDEL---ESQAQAPAIHKNGGEGSLKPEECPKACEYRCSATSHRKPC 65

Query:    73 KRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
                C  CC +C CVP GT G+ + CPCY N TT  G  KCP
Sbjct:    66 LFFCNKCCNKCLCVPSGTYGHKEECPCYNNWTTKEGGPKCP 106

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2039732 AT2G39540 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 28/62 (45%), Positives = 35/62 (56%)

Query:    52 DSDCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHK 111
             DS C G C  RC  + +   C + C  CC +C+CVP GT G+ D CPCY +M    G  K
Sbjct:    26 DSSCGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPSGTFGHKDECPCYRDMKNSKGGSK 85

Query:   112 CP 113
             CP
Sbjct:    86 CP 87

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:505006327 GASA5 "GAST1 protein homolog 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 35/85 (41%), Positives = 43/85 (50%)

Query:    29 LMVIKSVAESPMPQKIEGYWFAHDSDCDGACAARCQLSSRPRLCKRACGTCCARCDCVPP 88
             L+ + SV  S + Q   G        C+  C+ RC  +S  + C   C  CC +C CVPP
Sbjct:    15 LLFLLSV--SNLVQAARGGGKLKPQQCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPP 72

Query:    89 GTSGNYDACPCYANMTTHGGRHKCP 113
             GT GN   CPCY N  T  GR KCP
Sbjct:    73 GTFGNKQTCPCYNNWKTKEGRPKCP 97

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0009408 "response to heat" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0010286 "heat acclimation" evidence=IMP

TAIR|locus:2019195 GASA6 "AT1G74670" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 40/111 (36%), Positives = 54/111 (48%)

Query:     3 LSKSLTGSFLIISLVIHVFQLAQSDGLMVIKSVAESPMPQKIEGYWFAHDSDCDGACAAR 62
             ++K +T SFL+++++     L  S      +   ES  P  ++ Y       C G C  R
Sbjct:     1 MAKLIT-SFLLLTILFTFVCLTMSKEA---EYHPESYGPGSLKSY------QCGGQCTRR 50

Query:    63 CQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
             C  +   + C   C  CCA+C CVPPGT GN   CPCY N  T  G  KCP
Sbjct:    51 CSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009750 "response to fructose stimulus" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0010162 "seed dormancy process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P46689	GASA1_ARATH	No assigned EC number	0.6666	0.6725	0.7755	yes	no
Q93X17	SNAK2_SOLTU	No assigned EC number	0.5575	0.9203	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0002067101 hypothetical protein (99 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	113
pfam02704	60	pfam02704, GASA, Gibberellin regulated protein	9e-28

>gnl|CDD|190394 pfam02704, GASA, Gibberellin regulated protein

 Score = 95.8 bits (239), Expect = 9e-28
 Identities = 40/60 (66%), Positives = 43/60 (71%)

Query: 54  DCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113
           DC G CA RC  +SR + C RACG CCA+C CVPPGT GN D CPCY N  THGGR KCP
Sbjct: 1   DCGGKCAVRCSKTSRKKPCLRACGKCCAKCLCVPPGTYGNKDECPCYNNWKTHGGRPKCP 60

This is the GASA gibberellin regulated cysteine rich protein family. The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
PF02704	60	GASA: Gibberellin regulated protein; InterPro: IPR	100.0
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	95.17

>PF02704 GASA: Gibberellin regulated protein; InterPro: IPR003854 This is the GASA gibberellin regulated cysteine rich protein family

Probab=100.00  E-value=6.7e-37  Score=202.31  Aligned_cols=60  Identities=65%  Similarity=1.533  Sum_probs=59.4

Q ss_pred             CChHHhhHHhhcCCCCchHHHHHhHhcCcccccCCCCCCCCCCCCCcccccccCCCCCCC
Q 035679           54 DCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP  113 (113)
Q Consensus        54 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~Gt~gnk~~CpCY~~~~t~~g~~KCP  113 (113)
                      ||+++|++||++++++++|||+||+||++|+|||||||||+|+||||+||+||+|+||||
T Consensus         1 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~gn~~~CpCY~~m~t~~g~pKCP   60 (60)
T PF02704_consen    1 DCGGACSVRCSKASRKKRCMRACGTCCAKCKCVPPGTYGNKEECPCYRDMKTHGGKPKCP   60 (60)
T ss_pred             CcchHHHHHHhccCCchHHHHHHHHHhccCcccCCCCCCCCccCCChhhhhccCCCCCCc
Confidence            699999999999999999999999999999999999999999999999999999999999

The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds.

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=95.17  E-value=0.032  Score=39.40  Aligned_cols=7  Identities=57%  Similarity=0.662  Sum_probs=4.6

Q ss_pred             CchhHHHH
Q 035679            1 MALSKSLT    8 (113)
Q Consensus         1 MA~sk~l~    8 (113)
                      || ||.++
T Consensus         1 Ma-SK~~l    7 (95)
T PF07172_consen    1 MA-SKAFL    7 (95)
T ss_pred             Cc-hhHHH
Confidence            88 77444

Some of them may be involved in resistance to environmental stress [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00