Citrus Sinensis ID: 035693

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNIL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHccccccccccccccccccccccccccccEEEcccccEEEEEccccccccEEEcccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccHHHHcccccccEEEcccEEccccccccHHHHcccccccEEEcccccccccccccccccccccEEEccccccccccccHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccccHHccccccEEEcccccccccccHHccccccccEEEccccccEEEcccccccccccccEEEccccccEEEcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEcccccEEEEEEcccccccccccccHHHcccccccEEEcccccccccccccHcccccEEEcccccHcccccccccccccHHHcccccccEEEEccccccccccccHHHHccccccEEEEEccccccccccHHHcccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHcc
Coil and Loop (DISEMBL)
CQSDQKLLLIQMKNSfifdvdstppakmsqwsestdccdwngvdcdeaghvigldlsaepiligslenasglfSLQYLQSLNLGftlfygfpmpsslprlvtldlssrepisgfswrleipnfnffQNLTELRELYLDNVDLSGRRTEWCKamsflpnlqvlnlsncllsdpinhHLANLLSLSVirlrdnhavscQVPEFVANLLNLttldlsqcdlhgkfpekvlqvptleTLDLSYNSllqgslphfpknsslrnlnlkntsfsgklpdsignlenlasvdvsscnftrpiptsmaNLTQlfhldfssnhfsdpiptlRLYMSRNLnylnlssndltggissnil
Flexible Loop (DISEMBL)
CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLnlssndltggissnil
Low Complexity Region (SEG)
CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPknsslrnlnlknTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTlrlymsrnlnylnlssndlTGGISSNIL
Disordered region (IsUnstruct)
******LLLIQMKNSFIFDVD********QWSESTDCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSL**************************IGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLS*************
Disordered Region (DISOPRED)
CQSDQKLLLIQMKNSFIFDV**TPPAKMSQWSESTDCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNIL
Disordered Region (DISEMBL)
CQSDQKLLLIQMKNSFIFDVDST************DCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNIL
Disordered Region (DISPRO)
CQSDQKLLLIQMKNSFIFD****PPAKMSQWSESTDCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNIL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	348	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.910	0.253	0.316	4e-25
O82318	960	Probably inactive leucine	no	no	0.821	0.297	0.318	1e-22
Q9C9H7	847	Receptor-like protein 12	no	no	0.873	0.358	0.324	2e-22
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.761	0.261	0.309	1e-19
P47735	999	Receptor-like protein kin	no	no	0.864	0.301	0.304	1e-19
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.876	0.296	0.286	4e-19
Q9SSL9	1123	Leucine-rich repeat recep	no	no	0.882	0.273	0.322	4e-19
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.747	0.218	0.333	6e-19
Q9LHP4	1141	Receptor-like protein kin	no	no	0.850	0.259	0.292	9e-19
Q9FL28	1173	LRR receptor-like serine/	no	no	0.853	0.253	0.288	5e-18

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  115 bits (288), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 174/341 (51%), Gaps = 24/341 (7%)

Query: 9   LIQMKNSFIFDVDSTPPAKMSQW-SESTDCCDWNGVDCDEAG--HVIGLDLSAEPILIGS 65
           L+++K S + +     P  + QW S++ + C W GV CD  G   VI L+L+    L GS
Sbjct: 30  LLEVKKSLVTNPQEDDP--LRQWNSDNINYCSWTGVTCDNTGLFRVIALNLTGLG-LTGS 86

Query: 66  LENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRL--EIPNF 123
           +    G F    L  L+L      G P+P++L  L +L     E +  FS +L  EIP+ 
Sbjct: 87  ISPWFGRFD--NLIHLDLSSNNLVG-PIPTALSNLTSL-----ESLFLFSNQLTGEIPSQ 138

Query: 124 NFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSL 183
               +L  +R L + + +L G   E    +  L NLQ+L L++C L+ PI   L  L+ +
Sbjct: 139 --LGSLVNIRSLRIGDNELVGDIPE---TLGNLVNLQMLALASCRLTGPIPSQLGRLVRV 193

Query: 184 SVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLL 243
             + L+DN+ +   +P  + N  +LT    ++  L+G  P ++ ++  LE L+L+ NS L
Sbjct: 194 QSLILQDNY-LEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNS-L 251

Query: 244 QGSLP-HFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLT 302
            G +P    + S L+ L+L      G +P S+ +L NL ++D+S+ N T  IP    N++
Sbjct: 252 TGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMS 311

Query: 303 QLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGI 343
           QL  L  ++NH S  +P      + NL  L LS   L+G I
Sbjct: 312 QLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEI 352

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 157/327 (48%), Gaps = 41/327 (12%)

Query: 24  PPAKMSQWSEST--DCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSL 81
           P   +S WS S+  D C W+GV C+    V+ LDLS + +    L  A+  F L +LQ++
Sbjct: 45  PLKHLSSWSYSSTNDVCLWSGVVCNNISRVVSLDLSGKNMSGQILTAAT--FRLPFLQTI 102

Query: 82  NLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVD 141
           NL                       S   +SG      IP+  F  +   LR L L N +
Sbjct: 103 NL-----------------------SNNNLSG-----PIPHDIFTTSSPSLRYLNLSNNN 134

Query: 142 LSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEF 201
            SG          FLPNL  L+LSN + +  I + +    +L V+ L  N  ++  VP +
Sbjct: 135 FSGSIPR-----GFLPNLYTLDLSNNMFTGEIYNDIGVFSNLRVLDLGGN-VLTGHVPGY 188

Query: 202 VANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPH-FPKNSSLRNLN 260
           + NL  L  L L+   L G  P ++ ++  L+ + L YN+ L G +P+     SSL +L+
Sbjct: 189 LGNLSRLEFLTLASNQLTGGVPVELGKMKNLKWIYLGYNN-LSGEIPYQIGGLSSLNHLD 247

Query: 261 LKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPT 320
           L   + SG +P S+G+L+ L  + +     +  IP S+ +L  L  LDFS N  S  IP 
Sbjct: 248 LVYNNLSGPIPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPE 307

Query: 321 LRLYMSRNLNYLNLSSNDLTGGISSNI 347
           L   M ++L  L+L SN+LTG I   +
Sbjct: 308 LVAQM-QSLEILHLFSNNLTGKIPEGV 333

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 161/348 (46%), Gaps = 44/348 (12%)

Query: 1   CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQW----SESTDCCDWNGVDC-DEAGHVIGLD 55
           C+ DQ+  L++ +  F  +        M+QW    ++STDCC WNGV C D++G VI LD
Sbjct: 34  CRDDQRDALLEFRGEFPINASW---HIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLD 90

Query: 56  LSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFS 115
           +     L   L+  S LF LQYL+ L+L     YG  +PSSL  L  L L +   +    
Sbjct: 91  I-PNTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYG-EIPSSLGNLSHLTLVN---LYFNK 145

Query: 116 WRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINH 175
           +  EIP      NL +LR L L N  L+G        +S L NL++   SN L+   I  
Sbjct: 146 FVGEIPAS--IGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELF--SNRLVGK-IPD 200

Query: 176 HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETL 235
            + +L  L  + L  N+ +  ++P  + NL NL  L L+   L G+ P  +         
Sbjct: 201 SIGDLKQLRNLSLASNNLIG-EIPSSLGNLSNLVHLVLTHNQLVGEVPASI--------- 250

Query: 236 DLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIP 295
                    G+L        LR ++ +N S SG +P S  NL  L+   +SS NFT   P
Sbjct: 251 ---------GNL------IELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFP 295

Query: 296 TSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGI 343
             M+    L + D S N FS P P   L +  +L  + L  N  TG I
Sbjct: 296 FDMSIFHNLEYFDVSYNSFSGPFPK-SLLLIPSLESIYLQENQFTGPI 342

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/310 (30%), Positives = 139/310 (44%), Gaps = 45/310 (14%)

Query: 15  SFIFDVDST---PPAKMSQW--SESTDCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENA 69
           S +  V ST   P   +  W  S+++D C+W GV C+  G+V  LDL+    L G + ++
Sbjct: 32  SVLLSVKSTLVDPLNFLKDWKLSDTSDHCNWTGVRCNSNGNVEKLDLAGMN-LTGKISDS 90

Query: 70  SGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNL 129
             +  L  L S N+    F    +P S+P L ++D+S       FS  L    F F    
Sbjct: 91  --ISQLSSLVSFNISCNGFESL-LPKSIPPLKSIDISQNS----FSGSL----FLFSNES 139

Query: 130 TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLR 189
             L  L     +LSG  TE                            L NL+SL V+ LR
Sbjct: 140 LGLVHLNASGNNLSGNLTE---------------------------DLGNLVSLEVLDLR 172

Query: 190 DNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPH 249
            N      +P    NL  L  L LS  +L G+ P  + Q+P+LET  L YN       P 
Sbjct: 173 GNF-FQGSLPSSFKNLQKLRFLGLSGNNLTGELPSVLGQLPSLETAILGYNEFKGPIPPE 231

Query: 250 FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDF 309
           F   +SL+ L+L     SG++P  +G L++L ++ +   NFT  IP  + ++T L  LDF
Sbjct: 232 FGNINSLKYLDLAIGKLSGEIPSELGKLKSLETLLLYENNFTGTIPREIGSITTLKVLDF 291

Query: 310 SSNHFSDPIP 319
           S N  +  IP
Sbjct: 292 SDNALTGEIP 301

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P47735|RLK5_ARATH Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 155/341 (45%), Gaps = 40/341 (11%)

Query: 22  STPPAKMSQWSESTDC--CDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQ 79
           S P   +S WS++ D   C W GV CD   +V+ +DLS+  +L+G     S L  L  L 
Sbjct: 36  SDPAQSLSSWSDNNDVTPCKWLGVSCDATSNVVSVDLSSF-MLVGPF--PSILCHLPSLH 92

Query: 80  SLNLGFTLFYGFPMPSSLPR--------LVTLDLSSREPISGF--SWRLEIPNFNFFQNL 129
           SL+L     Y   +  SL          L++LDLS    +     S    +PN  F +  
Sbjct: 93  SLSL-----YNNSINGSLSADDFDTCHNLISLDLSENLLVGSIPKSLPFNLPNLKFLE-- 145

Query: 130 TELRELYLDNVDLSGRRTEWCKAMSF--LPNLQVLNLSNCLLSDPINHHLANLLSLSVIR 187
                       +SG         SF     L+ LNL+   LS  I   L N+ +L  ++
Sbjct: 146 ------------ISGNNLSDTIPSSFGEFRKLESLNLAGNFLSGTIPASLGNVTTLKELK 193

Query: 188 LRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSL 247
           L  N     Q+P  + NL  L  L L+ C+L G  P  + ++ +L  LDL++N L  GS+
Sbjct: 194 LAYNLFSPSQIPSQLGNLTELQVLWLAGCNLVGPIPPSLSRLTSLVNLDLTFNQL-TGSI 252

Query: 248 PHFPKN-SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFH 306
           P +     ++  + L N SFSG+LP+S+GN+  L   D S    T  IP ++  L     
Sbjct: 253 PSWITQLKTVEQIELFNNSFSGELPESMGNMTTLKRFDASMNKLTGKIPDNLNLLNLESL 312

Query: 307 LDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNI 347
             F  N    P+P   +  S+ L+ L L +N LTG + S +
Sbjct: 313 NLF-ENMLEGPLPE-SITRSKTLSELKLFNNRLTGVLPSQL 351

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates that controls floral organ abscission. May interact with the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) ligands family.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 156/352 (44%), Gaps = 47/352 (13%)

Query: 2   QSDQKLLLIQMKNSFIFD-----VDSTPPAKMSQWSESTDCCDWNGVDCDEAGHVIGLDL 56
           Q+ ++ +L+  K S +FD      D   P   + +SE   C  W GV CD  G+V  L L
Sbjct: 27  QNSEQEILLAFK-SDLFDPSNNLQDWKRPENATTFSELVHC-HWTGVHCDANGYVAKLLL 84

Query: 57  SAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSW 116
           S          N SG  S Q                   S P L  LDLS+       ++
Sbjct: 85  SNM--------NLSGNVSDQI-----------------QSFPSLQALDLSNN------AF 113

Query: 117 RLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHH 176
              +P     ++L+ L  L + +V ++     +   +     L  +N S+   S  +   
Sbjct: 114 ESSLP-----KSLSNLTSLKVIDVSVNSFFGTFPYGLGMATGLTHVNASSNNFSGFLPED 168

Query: 177 LANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLD 236
           L N  +L V+  R  +     VP    NL NL  L LS  +  GK P+ + ++ +LET+ 
Sbjct: 169 LGNATTLEVLDFRGGY-FEGSVPSSFKNLKNLKFLGLSGNNFGGKVPKVIGELSSLETII 227

Query: 237 LSYNSLLQGSLPH-FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIP 295
           L YN  + G +P  F K + L+ L+L   + +G++P S+G L+ L +V +     T  +P
Sbjct: 228 LGYNGFM-GEIPEEFGKLTRLQYLDLAVGNLTGQIPSSLGQLKQLTTVYLYQNRLTGKLP 286

Query: 296 TSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNI 347
             +  +T L  LD S N  +  IP + +   +NL  LNL  N LTG I S I
Sbjct: 287 RELGGMTSLVFLDLSDNQITGEIP-MEVGELKNLQLLNLMRNQLTGIIPSKI 337

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 107/332 (32%), Positives = 159/332 (47%), Gaps = 25/332 (7%)

Query: 21  DSTPPAKMSQW----SESTDCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQ 76
           D  PP   S W    SE+T C +W G+ CD++ +V  L+ +   +   S +    +  L+
Sbjct: 44  DRVPPQVTSTWKINASEATPC-NWFGITCDDSKNVASLNFTRSRV---SGQLGPEIGELK 99

Query: 77  YLQSLNLGFTLFYGFPMPSSL---PRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELR 133
            LQ L+L    F G  +PS+L    +L TLDLS     +GFS +  IP  +   +L  L 
Sbjct: 100 SLQILDLSTNNFSG-TIPSTLGNCTKLATLDLSE----NGFSDK--IP--DTLDSLKRLE 150

Query: 134 ELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHA 193
            LYL    L+G   E  +++  +P LQVL L    L+ PI   + +   L  + +  N  
Sbjct: 151 VLYLYINFLTG---ELPESLFRIPKLQVLYLDYNNLTGPIPQSIGDAKELVELSMYANQ- 206

Query: 194 VSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKN 253
            S  +PE + N  +L  L L +  L G  PE +  +  L TL +  NSL        P  
Sbjct: 207 FSGNIPESIGNSSSLQILYLHRNKLVGSLPESLNLLGNLTTLFVGNNSLQGPVRFGSPNC 266

Query: 254 SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNH 313
            +L  L+L    F G +P ++GN  +L ++ + S N +  IP+S+  L  L  L+ S N 
Sbjct: 267 KNLLTLDLSYNEFEGGVPPALGNCSSLDALVIVSGNLSGTIPSSLGMLKNLTILNLSENR 326

Query: 314 FSDPIPTLRLYMSRNLNYLNLSSNDLTGGISS 345
            S  IP   L    +LN L L+ N L GGI S
Sbjct: 327 LSGSIPA-ELGNCSSLNLLKLNDNQLVGGIPS 357

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score = 95.5 bits (236), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 144/309 (46%), Gaps = 49/309 (15%)

Query: 75  LQYLQSLNLGFTLFYGFPMPSSL---PRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTE 131
           L  L  LNL   +F G  +P  L     L TLDL S       + + +IP+      L +
Sbjct: 495 LTSLSVLNLNANMFQG-KIPVELGDCTSLTTLDLGSN------NLQGQIPDK--ITALAQ 545

Query: 132 LRELYLDNVDLSGRRTEWCKA---------MSFLPNLQVLNLSNCLLSDPINHHLANLLS 182
           L+ L L   +LSG       A         +SFL +  + +LS   LS PI   L   L 
Sbjct: 546 LQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLV 605

Query: 183 LSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSL 242
           L  I L +NH +S ++P  ++ L NLT LDLS   L G  P+++     L+ L+L+ N L
Sbjct: 606 LVEISLSNNH-LSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQL 664

Query: 243 LQGSLPH-FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCN------------ 289
             G +P  F    SL  LNL      G +P S+GNL+ L  +D+S  N            
Sbjct: 665 -NGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTM 723

Query: 290 ------------FTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSN 337
                       FT  IP+ + NLTQL +LD S N  S  IPT ++    NL +LNL+ N
Sbjct: 724 EKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPT-KICGLPNLEFLNLAKN 782

Query: 338 DLTGGISSN 346
           +L G + S+
Sbjct: 783 NLRGEVPSD 791

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 143/321 (44%), Gaps = 25/321 (7%)

Query: 33  ESTDCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYL--QSLNLGFTLFYG 90
           ++T C +W  + C   G +  +D+ + P+ +   +N     SLQ L     NL  TL   
Sbjct: 65  DNTPCNNWTFITCSSQGFITDIDIESVPLQLSLPKNLPAFRSLQKLTISGANLTGTL--- 121

Query: 91  FPMPSSLP---RLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRT 147
              P SL     L  LDLSS   +    W L          L  L  L L++  L+G+  
Sbjct: 122 ---PESLGDCLGLKVLDLSSNGLVGDIPWSL--------SKLRNLETLILNSNQLTGKIP 170

Query: 148 EWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLN 207
                +S    L+ L L + LL+  I   L  L  L VIR+  N  +S Q+P  + +  N
Sbjct: 171 ---PDISKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSN 227

Query: 208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKN-SSLRNLNLKNTSF 266
           LT L L++  + G  P  + ++  LETL + Y +++ G +P    N S L +L L   S 
Sbjct: 228 LTVLGLAETSVSGNLPSSLGKLKKLETLSI-YTTMISGEIPSDLGNCSELVDLFLYENSL 286

Query: 267 SGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMS 326
           SG +P  IG L  L  + +   +    IP  + N + L  +D S N  S  IP+    +S
Sbjct: 287 SGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLS 346

Query: 327 RNLNYLNLSSNDLTGGISSNI 347
             L    +S N  +G I + I
Sbjct: 347 F-LEEFMISDNKFSGSIPTTI 366

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 148/343 (43%), Gaps = 46/343 (13%)

Query: 10  IQMKNSFIFDVDSTPPAKMSQWS--ESTDCCDWNGVDCDEAGHVIGLDLSAEPILIGSLE 67
           I+   SF   + + P   +S W+   S   C+W G+ CD  GHV+ + L  E  L G L 
Sbjct: 31  IEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDSTGHVVSVSL-LEKQLEGVLS 89

Query: 68  NASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQ 127
            A  + +L YLQ L+L    F G  +P+ + +L                           
Sbjct: 90  PA--IANLTYLQVLDLTSNSFTG-KIPAEIGKL--------------------------- 119

Query: 128 NLTELREL--YLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSV 185
             TEL +L  YL+    S     W      L N+  L+L N LLS  +   +    SL +
Sbjct: 120 --TELNQLILYLNYFSGSIPSGIWE-----LKNIFYLDLRNNLLSGDVPEEICKTSSLVL 172

Query: 186 IRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQG 245
           I   D + ++ ++PE + +L++L     +   L G  P  +  +  L  LDLS N L  G
Sbjct: 173 IGF-DYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQL-TG 230

Query: 246 SLPH-FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQL 304
            +P  F    +L++L L      G +P  IGN  +L  +++     T  IP  + NL QL
Sbjct: 231 KIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQL 290

Query: 305 FHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNI 347
             L    N  +  IP+  L+    L +L LS N L G IS  I
Sbjct: 291 QALRIYKNKLTSSIPS-SLFRLTQLTHLGLSENHLVGPISEEI 332

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
237899607	1139	verticillium wilt disease resistance pro	0.971	0.296	0.501	4e-84
237899605	1139	verticillium wilt disease resistance pro	0.971	0.296	0.501	4e-84
237899609	1139	verticillium wilt disease resistance pro	0.971	0.296	0.501	4e-84
350535939	1139	verticillium wilt disease resistance pro	0.971	0.296	0.501	5e-84
37956237	1051	resistance protein SlVe1 precursor [Sola	0.971	0.321	0.498	5e-82
224139184	1032	predicted protein [Populus trichocarpa]	0.974	0.328	0.491	2e-81
33439498	1138	disease resistance protein SlVe2 precurs	0.971	0.297	0.490	7e-80
49073108	1051	verticillium wilt disease resistance pro	0.962	0.318	0.489	1e-79
359481298	1070	PREDICTED: LRR receptor-like serine/thre	0.979	0.318	0.485	9e-79
34761800	1138	verticillium wilt disease resistance pro	0.971	0.297	0.474	9e-79

>gi|237899607|gb|ACR33108.1| verticillium wilt disease resistance protein [Solanum lycopersicum] gi|237899611|gb|ACR33110.1| verticillium wilt disease resistance protein [Solanum lycopersicum] gi|237899613|gb|ACR33111.1| verticillium wilt disease resistance protein [Solanum lycopersicum]

 Score =  317 bits (813), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 187/373 (50%), Positives = 245/373 (65%), Gaps = 35/373 (9%)

Query: 1   CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSEST-DCCDWNGVDCDEAGHVIGLDLSAE 59
           C  DQK LL+Q+K SF +D  ST   K+++W+ +T +CC+WNGV CD +GHVI L+L  E
Sbjct: 31  CLDDQKSLLLQLKGSFQYD--STLSNKLARWNHNTSECCNWNGVTCDLSGHVIALELDDE 88

Query: 60  PILIGSLENASGLFSLQYLQSLNLGFTLF-YGFP-------------------------M 93
            I  G +ENAS LFSLQYL+ LNL +  F  G P                         M
Sbjct: 89  KISSG-IENASALFSLQYLERLNLAYNKFNVGIPVGIGNLTNLTYLNLSNAGFVGQIPMM 147

Query: 94  PSSLPRLVTLDLSSREPISGFSWRLEIPNF-NFFQNLTELRELYLDNVDLSGRRTEWCKA 152
            S L RLVTLDLS+  P      +LE PN  +F +N TELRELYLD VDLS +RTEWC++
Sbjct: 148 LSRLTRLVTLDLSTLFPDFAQPLKLENPNLSHFIENSTELRELYLDGVDLSAQRTEWCQS 207

Query: 153 MS-FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTL 211
           +S +LPNL VL+L  C +S PI+  L+ L  LS IRL D + +S  VPE+ AN  NLTTL
Sbjct: 208 LSSYLPNLTVLSLRTCRISGPIDESLSKLHFLSFIRL-DQNNLSTTVPEYFANFSNLTTL 266

Query: 212 DLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLP 271
            LS C+L G FP+++ QVP LE LDLS N LL GS+P FP+  SLR ++L  T FSG LP
Sbjct: 267 TLSSCNLQGTFPKRIFQVPVLEFLDLSTNKLLSGSIPIFPQIGSLRTISLSYTKFSGSLP 326

Query: 272 DSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNY 331
           D+I NL+NL+ +++S+CNF+ PIP++MANLT L +LDFS N+F+  +P  +   ++ L Y
Sbjct: 327 DTISNLQNLSRLELSNCNFSEPIPSTMANLTNLVYLDFSFNNFTGSLPYFQ--GAKKLIY 384

Query: 332 LNLSSNDLTGGIS 344
           L+LS N LTG +S
Sbjct: 385 LDLSRNGLTGLLS 397

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|237899605|gb|ACR33107.1| verticillium wilt disease resistance protein [Solanum lycopersicum]

 Score =  317 bits (813), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 187/373 (50%), Positives = 245/373 (65%), Gaps = 35/373 (9%)

Query: 1   CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSEST-DCCDWNGVDCDEAGHVIGLDLSAE 59
           C  DQK LL+Q+K SF +D  ST   K+++W+ +T +CC+WNGV CD +GHVI L+L  E
Sbjct: 31  CLDDQKSLLLQLKGSFQYD--STLSNKLARWNHNTSECCNWNGVTCDLSGHVIALELDDE 88

Query: 60  PILIGSLENASGLFSLQYLQSLNLGFTLF-YGFP-------------------------M 93
            I  G +ENAS LFSLQYL+ LNL +  F  G P                         M
Sbjct: 89  KISSG-IENASALFSLQYLERLNLAYNKFNVGIPVGIGNLTNLTYLNLSNAGFVGQIPMM 147

Query: 94  PSSLPRLVTLDLSSREPISGFSWRLEIPNF-NFFQNLTELRELYLDNVDLSGRRTEWCKA 152
            S L RLVTLDLS+  P      +LE PN  +F +N TELRELYLD VDLS +RTEWC++
Sbjct: 148 LSRLTRLVTLDLSTLFPDFAQPLKLENPNLSHFIENSTELRELYLDGVDLSAQRTEWCQS 207

Query: 153 MS-FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTL 211
           +S +LPNL VL+L  C +S PI+  L+ L  LS IRL D + +S  VPE+ AN  NLTTL
Sbjct: 208 LSSYLPNLTVLSLRTCRISGPIDESLSKLHFLSFIRL-DQNNLSTTVPEYFANFSNLTTL 266

Query: 212 DLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLP 271
            LS C+L G FP+++ QVP LE LDLS N LL GS+P FP+  SLR ++L  T FSG LP
Sbjct: 267 TLSSCNLQGTFPKRIFQVPVLEFLDLSTNKLLSGSIPIFPQIGSLRTISLSYTKFSGSLP 326

Query: 272 DSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNY 331
           D+I NL+NL+ +++S+CNF+ PIP++MANLT L +LDFS N+F+  +P  +   ++ L Y
Sbjct: 327 DTISNLQNLSRLELSNCNFSEPIPSTMANLTNLVYLDFSFNNFTGSLPYFQ--GAKKLIY 384

Query: 332 LNLSSNDLTGGIS 344
           L+LS N LTG +S
Sbjct: 385 LDLSRNGLTGLLS 397

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|237899609|gb|ACR33109.1| verticillium wilt disease resistance protein [Solanum lycopersicum]

 Score =  317 bits (813), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 187/373 (50%), Positives = 245/373 (65%), Gaps = 35/373 (9%)

Query: 1   CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSEST-DCCDWNGVDCDEAGHVIGLDLSAE 59
           C  DQK LL+Q+K SF +D  ST   K+++W+ +T +CC+WNGV CD +GHVI L+L  E
Sbjct: 31  CLDDQKSLLLQLKGSFQYD--STLSNKLARWNHNTSECCNWNGVTCDLSGHVIALELDDE 88

Query: 60  PILIGSLENASGLFSLQYLQSLNLGFTLF-YGFP-------------------------M 93
            I  G +ENAS LFSLQYL+ LNL +  F  G P                         M
Sbjct: 89  KISSG-IENASALFSLQYLERLNLAYNKFNVGIPVGIGNLTNLTYLNLSNAGFVGQIPMM 147

Query: 94  PSSLPRLVTLDLSSREPISGFSWRLEIPNF-NFFQNLTELRELYLDNVDLSGRRTEWCKA 152
            S L RLVTLDLS+  P      +LE PN  +F +N TELRELYLD VDLS +RTEWC++
Sbjct: 148 LSRLTRLVTLDLSTLFPDFAQPLKLENPNLSHFIENSTELRELYLDGVDLSAQRTEWCQS 207

Query: 153 MS-FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTL 211
           +S +LPNL VL+L  C +S PI+  L+ L  LS IRL D + +S  VPE+ AN  NLTTL
Sbjct: 208 LSSYLPNLTVLSLRTCRISGPIDESLSKLHFLSFIRL-DQNNLSTTVPEYFANFSNLTTL 266

Query: 212 DLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLP 271
            LS C+L G FP+++ QVP LE LDLS N LL GS+P FP+  SLR ++L  T FSG LP
Sbjct: 267 TLSSCNLQGTFPKRIFQVPVLEFLDLSTNKLLSGSIPIFPQIGSLRTISLSYTKFSGSLP 326

Query: 272 DSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNY 331
           D+I NL+NL+ +++S+CNF+ PIP++MANLT L +LDFS N+F+  +P  +   ++ L Y
Sbjct: 327 DTISNLQNLSRLELSNCNFSEPIPSTMANLTNLVYLDFSFNNFTGSLPYFQ--GAKKLIY 384

Query: 332 LNLSSNDLTGGIS 344
           L+LS N LTG +S
Sbjct: 385 LDLSRNGLTGLLS 397

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535939|ref|NP_001234733.1| verticillium wilt disease resistance protein Ve2 precursor [Solanum lycopersicum] gi|14269077|gb|AAK58011.1|AF365929_1 verticillium wilt disease resistance protein Ve2 [Solanum lycopersicum] gi|14269079|gb|AAK58012.1|AF365930_1 verticillium wilt disease resistance protein Ve2 [Solanum lycopersicum]

 Score =  317 bits (812), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 187/373 (50%), Positives = 245/373 (65%), Gaps = 35/373 (9%)

Query: 1   CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSEST-DCCDWNGVDCDEAGHVIGLDLSAE 59
           C  DQK LL+Q+K SF +D  ST   K+++W+ +T +CC+WNGV CD +GHVI L+L  E
Sbjct: 31  CLDDQKSLLLQLKGSFQYD--STLSNKLARWNHNTSECCNWNGVTCDLSGHVIALELDDE 88

Query: 60  PILIGSLENASGLFSLQYLQSLNLGFTLF-YGFP-------------------------M 93
            I  G +ENAS LFSLQYL+ LNL +  F  G P                         M
Sbjct: 89  KISSG-IENASALFSLQYLERLNLAYNKFNVGIPVGIGNLTNLTYLNLSNAGFVGQIPMM 147

Query: 94  PSSLPRLVTLDLSSREPISGFSWRLEIPNF-NFFQNLTELRELYLDNVDLSGRRTEWCKA 152
            S L RLVTLDLS+  P      +LE PN  +F +N TELRELYLD VDLS +RTEWC++
Sbjct: 148 LSRLTRLVTLDLSTLFPDFAQPLKLENPNLSHFIENSTELRELYLDGVDLSAQRTEWCQS 207

Query: 153 MS-FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTL 211
           +S +LPNL VL+L  C +S PI+  L+ L  LS IRL D + +S  VPE+ AN  NLTTL
Sbjct: 208 LSSYLPNLTVLSLRTCRISGPIDESLSKLHFLSFIRL-DQNNLSTTVPEYFANFSNLTTL 266

Query: 212 DLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLP 271
            LS C+L G FP+++ QVP LE LDLS N LL GS+P FP+  SLR ++L  T FSG LP
Sbjct: 267 TLSSCNLQGTFPKRIFQVPVLEFLDLSTNKLLSGSIPIFPQIGSLRTISLSYTKFSGSLP 326

Query: 272 DSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNY 331
           D+I NL+NL+ +++S+CNF+ PIP++MANLT L +LDFS N+F+  +P  +   ++ L Y
Sbjct: 327 DTISNLQNLSRLELSNCNFSEPIPSTMANLTNLVYLDFSFNNFTGSLPYFQ--GAKKLIY 384

Query: 332 LNLSSNDLTGGIS 344
           L+LS N LTG +S
Sbjct: 385 LDLSRNGLTGLLS 397

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37956237|gb|AAP20228.1| resistance protein SlVe1 precursor [Solanum lycopersicoides] gi|37956239|gb|AAP20229.1| resistance protein SlVe1 precursor [Solanum lycopersicoides]

 Score =  310 bits (795), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 186/373 (49%), Positives = 241/373 (64%), Gaps = 35/373 (9%)

Query: 1   CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSEST-DCCDWNGVDCDEAGHVIGLDLSAE 59
           C  DQK LL+Q+K SF +D  ST   K+ +W+ +T +CC+WNGV CD +GHVI L+L  E
Sbjct: 33  CLDDQKSLLLQLKGSFQYD--STLSNKLERWNHNTSECCNWNGVTCDLSGHVIALELDDE 90

Query: 60  PILIGSLENASGLFSLQYLQSLNLGFTLF-YGFP-------------------------M 93
            I  G +ENAS LFSLQYL+SLNL +  F  G P                         M
Sbjct: 91  KISSG-IENASALFSLQYLESLNLAYNKFNVGIPVGIGNLTNLKYLNLSNAGFVGQIPMM 149

Query: 94  PSSLPRLVTLDLSSREPISGFSWRLEIPNF-NFFQNLTELRELYLDNVDLSGRRTEWCKA 152
            S L RLVTLDLS+  P      +LE PN  +F +N TELRELYLD VDLS +RT+WC++
Sbjct: 150 LSRLTRLVTLDLSTLFPDFDQPLKLENPNLRHFIENSTELRELYLDGVDLSAQRTDWCQS 209

Query: 153 MS-FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTL 211
           +S +LPNL VL+L  C +S PI+  L+ L  LS+IRL  N+ +S  VP + AN  NLTTL
Sbjct: 210 LSSYLPNLTVLSLCACQISGPIDESLSKLQILSIIRLERNN-LSTTVPGYFANFTNLTTL 268

Query: 212 DLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLP 271
            L  C+L G FP+K+ QV  LE+LDLS N LL GS+P FP+N SLR ++L  T+FSG LP
Sbjct: 269 SLDSCNLQGAFPKKIFQVQVLESLDLSNNKLLSGSIPSFPRNGSLRRISLSYTNFSGSLP 328

Query: 272 DSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNY 331
           +SI NL+NL+ + +S  NF  PIP++MANL  L +LDFS N+F+  IP  +   S+ L Y
Sbjct: 329 ESISNLQNLSRLGLSDFNFNGPIPSTMANLINLGYLDFSRNNFTGSIPHFQ--RSKKLTY 386

Query: 332 LNLSSNDLTGGIS 344
           L+LS N LTG +S
Sbjct: 387 LDLSRNGLTGLLS 399

Source: Solanum lycopersicoides

Species: Solanum lycopersicoides

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139184|ref|XP_002323001.1| predicted protein [Populus trichocarpa] gi|222867631|gb|EEF04762.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 184/374 (49%), Positives = 239/374 (63%), Gaps = 35/374 (9%)

Query: 1   CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCDWNGVDCDEA-GHVIGLDLSAE 59
           C+ DQ+ LL+Q+KN+ +FD   +  AK+ +W+ + DCCDW G+ CDE  G VI LDLS+E
Sbjct: 25  CRKDQQSLLLQLKNTLVFDQSVS--AKLVKWNSTPDCCDWPGITCDEGSGRVISLDLSSE 82

Query: 60  PILIGSLENASGLFSLQYLQSLNLGFTLF-----YGFP------------------MP-- 94
            I  G L ++SGL+ LQ+LQSLNL F  F      GF                   +P  
Sbjct: 83  RI-TGGLGDSSGLYRLQFLQSLNLSFNSFSTALPVGFANLTDLISLNLSNAGFTGQIPND 141

Query: 95  -SSLPRLVTLDLSSREPISGFSWRLEIPNF-NFFQNLTELRELYLDNVDLSGRRTEWCKA 152
            S L +LV+LDLS+       + +LE PNF    QNLT L EL LD V++S    +WCKA
Sbjct: 142 FSKLTKLVSLDLSALSFPGSPALKLEQPNFATLVQNLTHLTELLLDGVNISAHGNDWCKA 201

Query: 153 MSF-LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTL 211
           +S  LPNL+VL++SNC LS P++  LA L SLS+IRL  N+ +S  VPEF+AN   LT L
Sbjct: 202 LSSSLPNLKVLSMSNCYLSGPLDASLAKLQSLSIIRLSGNN-LSTPVPEFLANYSKLTAL 260

Query: 212 DLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLP 271
            LS C L+G FP+ + QVPTLE LDL YN  LQGS P F +N SLR L L NT+FSG LP
Sbjct: 261 QLSSCQLNGIFPQAIFQVPTLEILDLQYNKFLQGSFPEFHQNLSLRTLLLSNTNFSGTLP 320

Query: 272 DSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNY 331
            SIG L+ L+ ++++  NFT PIP SMANLTQLF+LD  SN F+  +P+ R   S+NL Y
Sbjct: 321 QSIGELQKLSRIELAGNNFTGPIPNSMANLTQLFYLDLLSNKFTGTLPSFR--KSKNLTY 378

Query: 332 LNLSSNDLTGGISS 345
           +++S N L G I S
Sbjct: 379 VDVSHNQLKGEIPS 392

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33439498|gb|AAQ18798.1| disease resistance protein SlVe2 precursor [Solanum lycopersicoides] gi|33439500|gb|AAQ18799.1| disease resistance protein SlVe2 precursor [Solanum lycopersicoides]

 Score =  303 bits (777), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 183/373 (49%), Positives = 244/373 (65%), Gaps = 35/373 (9%)

Query: 1   CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSEST-DCCDWNGVDCDEAGHVIGLDLSAE 59
           C  DQK LL+Q+K SF +D  ST   K+ +W+ +T +CC+WNGV CD +GHVI L+L  E
Sbjct: 30  CLDDQKSLLLQLKGSFQYD--STLSNKLERWNHNTSECCNWNGVTCDLSGHVIALELDDE 87

Query: 60  PILIGSLENASGLFSLQYLQSLNLGFTLF-YGFP-------------------------M 93
            I  G +ENAS LFSLQYL+SLNL +  F  G P                         M
Sbjct: 88  KISSG-IENASALFSLQYLESLNLAYNKFKVGIPVGIGNLTNLKYLNLSNAGFVGQIPMM 146

Query: 94  PSSLPRLVTLDLSSREPISGFSWRLEIPNF-NFFQNLTELRELYLDNVDLSGRRTEWCKA 152
            S L RLVTLDLS+  P      +LE PN  +F +N TELRELYLD VDLS + TEWC++
Sbjct: 147 LSRLTRLVTLDLSTLFPDFDQPLKLENPNLSHFIENSTELRELYLDGVDLSAQSTEWCQS 206

Query: 153 MS-FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTL 211
           +S +LPNL VL+L +C +SDPI+  L+ L  LS IRL D + +S  VPE+ AN  ++TTL
Sbjct: 207 LSSYLPNLTVLSLRDCRISDPIHESLSKLHFLSFIRL-DQNNLSTTVPEYFANFSSMTTL 265

Query: 212 DLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLP 271
           +L+ C+L G FPE++ QV  L++LDLS N LL+GS+P F +N SLR L+L  T+F G LP
Sbjct: 266 NLASCNLQGTFPERIFQVSVLDSLDLSTNKLLRGSIPIFLQNGSLRILSLSYTNFFGSLP 325

Query: 272 DSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNY 331
           +SI NL+NL+ +++S+CNF   IP++MANL  L +LD S N+F+  IP  +   S+ L Y
Sbjct: 326 ESISNLQNLSRLELSNCNFNGSIPSTMANLINLGYLDLSFNNFTGSIPYFQ--RSKKLTY 383

Query: 332 LNLSSNDLTGGIS 344
           L+LS N LTG +S
Sbjct: 384 LDLSRNGLTGLLS 396

Source: Solanum lycopersicoides

Species: Solanum lycopersicoides

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|49073108|gb|AAT51733.1| verticillium wilt disease resistance protein [Solanum aethiopicum]

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 181/370 (48%), Positives = 237/370 (64%), Gaps = 35/370 (9%)

Query: 1   CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSEST-DCCDWNGVDCDEAGHVIGLDLSAE 59
           C  DQK LL+Q K S  +D  ST   K+++W++ T +CC+WNGV C+  GHVI L+L  E
Sbjct: 33  CLDDQKSLLLQFKGSLQYD--STLSKKLAKWNDMTSECCNWNGVTCNLFGHVIALELDDE 90

Query: 60  PILIGSLENASGLFSLQYLQSLNLGFTLF-YGFPMP------------------------ 94
            I  G +EN+S LFSLQYL+SLNL   +F  G P+                         
Sbjct: 91  TISSG-IENSSALFSLQYLESLNLADNMFNVGIPVGIDNLTNLKYLNLSNAGFVGQIPIT 149

Query: 95  -SSLPRLVTLDLSSREPISGFSWRLEIPNF-NFFQNLTELRELYLDNVDLSGRRTEWCKA 152
            S L RLVTLDLS+  P      +LE PN  +F +N TELRELYLD VDLS +R+EWC++
Sbjct: 150 LSRLTRLVTLDLSTILPFFDQPLKLENPNLSHFIENSTELRELYLDGVDLSSQRSEWCQS 209

Query: 153 MSF-LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTL 211
           +S  LPNL VL+L +C +S P++  L  L  LS ++L D + +S  VPE+ AN  NLTT 
Sbjct: 210 LSLHLPNLTVLSLRDCQISGPLDESLTKLHFLSFVQL-DQNNLSSTVPEYFANFSNLTTF 268

Query: 212 DLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLP 271
           D   C+L G FPE++ QV  LE LDLS N LL GS+P+FP+  SLR + L  T+FSG LP
Sbjct: 269 DPGLCNLQGTFPERIFQVSVLEILDLSNNKLLSGSIPNFPRYGSLRRILLSYTNFSGSLP 328

Query: 272 DSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNY 331
           DSI NL+NL+ +++S CNF  PIP++MANLT L +LDFSSN+F+  IP  +   S+ L Y
Sbjct: 329 DSISNLQNLSRLELSYCNFNGPIPSTMANLTNLVYLDFSSNNFTGFIPYFQ--RSKKLTY 386

Query: 332 LNLSSNDLTG 341
           L+LS N LTG
Sbjct: 387 LDLSRNGLTG 396

Source: Solanum aethiopicum

Species: Solanum aethiopicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481298|ref|XP_003632604.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  300 bits (767), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 183/377 (48%), Positives = 232/377 (61%), Gaps = 36/377 (9%)

Query: 1   CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCDWNGVDCDEAGHVIGLDLSAEP 60
           C  DQ  LL+Q+KN+  F+V ++  +K+  W+ S DCC W GV  D  GHV+ LDLS++ 
Sbjct: 37  CLEDQMSLLLQLKNTLKFNVAAS--SKLVSWNPSMDCCSWGGVTWDATGHVVALDLSSQS 94

Query: 61  ILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSS------------------------ 96
           I  G   N S +FSLQYLQSLNL    F    +PS                         
Sbjct: 95  I-YGGFNNTSSIFSLQYLQSLNLADNSFNSSQIPSGFGKLGNLMYLNLSNAGFSGQIPIE 153

Query: 97  ---LPRLVTLDLSSREPISGFSWRLEIPNFNFF-QNLTELRELYLDNVDLSGRRTEWCKA 152
              L +LVT+D S    +   + +LE PN     QNLTELRELYL+ V++S +  EWC+A
Sbjct: 154 VSCLTKLVTIDFSVFY-LGVPTLKLENPNLRMLVQNLTELRELYLNGVNISAQGKEWCQA 212

Query: 153 MSF-LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTL 211
           +S  +PNLQVL+L +C LS P++  L  L SLS IRL D +  S  VPEF+AN  NLT L
Sbjct: 213 LSSSVPNLQVLSLPSCYLSGPLDSSLQKLRSLSSIRL-DGNNFSAPVPEFLANFSNLTQL 271

Query: 212 DLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLP 271
            LS C L+G FPEK+ QVPTL+ LDLS N LL GSLP FP+N SL  L L +T FSGK+P
Sbjct: 272 RLSSCGLNGTFPEKIFQVPTLQILDLSNNKLLLGSLPEFPQNGSLETLVLPDTKFSGKVP 331

Query: 272 DSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNY 331
           +SIGNL+ L  ++++ CNF+ PIP S ANL QL +LD S N FS PIP   L  S+NL  
Sbjct: 332 NSIGNLKRLTRIELARCNFSGPIPNSTANLAQLVYLDLSENKFSGPIPPFSL--SKNLTR 389

Query: 332 LNLSSNDLTGGISSNIL 348
           +NLS N LTG I S+ L
Sbjct: 390 INLSHNYLTGPIPSSHL 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34761800|gb|AAQ82053.1| verticillium wilt disease resistance protein precursor [Solanum torvum]

 Score =  300 bits (767), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 177/373 (47%), Positives = 242/373 (64%), Gaps = 35/373 (9%)

Query: 1   CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSEST-DCCDWNGVDCDEAGHVIGLDLSAE 59
           C   QK LL+++  +  +D  S+   K+++W+++T +CC+W+GV CD +GHVI L+L  E
Sbjct: 30  CLDHQKSLLLKLNGTLQYD--SSLSTKLARWNQNTSECCNWDGVTCDLSGHVIALELDNE 87

Query: 60  PILIGSLENASGLFSLQYLQSLNLGFTLF-YGFP-------------------------M 93
            I  G +EN+S LFSLQYL+ LNL +  F  G P                         M
Sbjct: 88  TISSG-IENSSALFSLQYLEKLNLAYNRFSVGIPVGISNLTNLKYLNLSNAGFLGQIPMM 146

Query: 94  PSSLPRLVTLDLSSREPISGFSWRLEIPNF-NFFQNLTELRELYLDNVDLSGRRTEWCKA 152
            S L RLVTLDLS+  P +    +LE PN  +F +N TELRELYLD VDLS +R EWC++
Sbjct: 147 LSRLTRLVTLDLSTLFPDAIHPLKLENPNLTHFIENSTELRELYLDGVDLSAQRAEWCQS 206

Query: 153 MS-FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTL 211
           +S +LPNL VL+L  C +S PI+  L+ L  LS+IRL D + +S  VPE+ +N  NLTTL
Sbjct: 207 LSSYLPNLTVLSLRTCQISGPIDDSLSQLQFLSIIRL-DQNNLSTTVPEYFSNFSNLTTL 265

Query: 212 DLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLP 271
            L  C+L G FPE++ QV  LE L+LS N LL GS+ +FP+  SLR ++L  TSFSG LP
Sbjct: 266 TLGSCNLQGTFPERIFQVSVLEVLELSNNKLLSGSIQNFPRYGSLRRISLSYTSFSGSLP 325

Query: 272 DSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNY 331
           +SI NL+NL+ +++S+CNF  PIP++MANLT L +LDFS N+F+  IP  +   S+ L Y
Sbjct: 326 ESISNLQNLSRLELSNCNFNGPIPSTMANLTNLVYLDFSFNNFTGFIPYFQ--RSKKLTY 383

Query: 332 LNLSSNDLTGGIS 344
           L+LS N LTG +S
Sbjct: 384 LDLSRNGLTGLLS 396

Source: Solanum torvum

Species: Solanum torvum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
TAIR|locus:2096339	786	RLP30 "receptor like protein 3	0.876	0.388	0.320	1.1e-32
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.870	0.297	0.332	2.1e-30
TAIR|locus:2825389	784	RLP11 "AT1G71390" [Arabidopsis	0.885	0.392	0.304	5.8e-28
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.902	0.315	0.294	1.5e-27
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.882	0.344	0.311	1.6e-27
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.839	0.410	0.330	3.1e-26
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.873	0.317	0.301	4.5e-26
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.879	0.361	0.311	7.5e-26
TAIR|locus:2094603	835	RLP37 "receptor like protein 3	0.896	0.373	0.301	2e-25
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.876	0.310	0.301	3.4e-25

TAIR|locus:2096339 RLP30 "receptor like protein 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 104/324 (32%), Positives = 158/324 (48%)

Query:     1 CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCDWNGVDCD-EAGHVIGLDLSAE 59
             C+ DQ+  L++ K+ F    +S P   +S W++++DCC W GV CD E+G V+ LDLS  
Sbjct:    37 CRHDQRDALLEFKHEFPVS-ESKPSPSLSSWNKTSDCCFWEGVTCDDESGEVVSLDLSYV 95

Query:    60 PILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS--SLPRLVTLDLSSREPISGFSWR 117
              +L  SL+  SGLF LQ LQ+L L     YG    S  +L RL  LDLSS + ++G    
Sbjct:    96 -LLNNSLKPTSGLFKLQQLQNLTLSDCHLYGEVTSSLGNLSRLTHLDLSSNQ-LTG---- 149

Query:   118 LEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHL 177
              E+        L +LR+L L     SG        ++ L +L +   SN    +  +  L
Sbjct:   150 -EV--LASVSKLNQLRDLLLSENSFSGNIPTSFTNLTKLSSLDIS--SNQFTLENFSFIL 204

Query:   178 ANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDL 237
              NL SLS + +  NH  S  +P  ++ L NL   D+ +    G FP  +  +P+L+ + L
Sbjct:   205 PNLTSLSSLNVASNHFKST-LPSDMSGLHNLKYFDVRENSFVGTFPTSLFTIPSLQIVYL 263

Query:   238 SYNSLLQGSLP--HFPXXXXXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSCNFTRPIP 295
               N  + G +   +                F G +P+ I  + +L  +D+S  N   PIP
Sbjct:   264 EGNQFM-GPIKFGNISSSSRLWDLNLADNKFDGPIPEYISEIHSLIVLDLSHNNLVGPIP 322

Query:   296 TSMANLTQLFHLDFSSNHFSDPIP 319
             TS++ L  L HL  S+N     +P
Sbjct:   323 TSISKLVNLQHLSLSNNTLEGEVP 346

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 2.1e-30, P = 2.1e-30
 Identities = 110/331 (33%), Positives = 164/331 (49%)

Query:     1 CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCDWNGVDCD-EAGHVIGLDLSAE 59
             C SDQK  L+  KN F   VDS        W   +DCC W+G+ CD ++G+VIGLDLS+ 
Sbjct:    74 CHSDQKDALLDFKNEFGM-VDS------KSWVNKSDCCSWDGITCDAKSGNVIGLDLSSI 126

Query:    60 PILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLE 119
               L G L++ S LF L++L+ LNL    F   P+P+   +L  L+   R  +S  S   +
Sbjct:   127 -FLYGQLKSNSSLFKLRHLRDLNLANNNFNNSPIPAEFDKLTGLE---RLDLSQSSLSGQ 182

Query:   120 IPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAM--SFLP-------NLQVLNLSNCLLS 170
             IP  N  Q LT+L  L L + D  G  +    ++  SFLP       NL+ L++S   +S
Sbjct:   183 IP-INLLQ-LTKLVSLDLSSSDFFGDESFHYLSIDKSFLPLLARNLRNLRELDMSYVKIS 240

Query:   171 DPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDL-SQCDLHGKFPEKVLQV 229
               I    +N+ SL  + L   +    + P  +  + NL ++DL +  +L G  P    + 
Sbjct:   241 SEIPEEFSNIRSLRSLNLNGCNLFG-EFPSSILLIPNLQSIDLGNNPNLRGNLPV-FHEN 298

Query:   230 PTLETLDLSYNSLLQGSLPHFPXXXXXXXXXXXXTS-FSGKLPDSIGNLENLASVDVSSC 288
              +L  L + Y S   G++P                S FSGK+P S+GNL +L+ + +SS 
Sbjct:   299 NSLLKLTILYTSF-SGAIPDSISSLKNLTSLTLSVSYFSGKIPFSLGNLSHLSHLSLSSN 357

Query:   289 NFTRPIPTSMANLTQLFHLDFSSNHFSDPIP 319
             N    IP+S+ NL QL +     N  S  +P
Sbjct:   358 NLIGEIPSSIGNLNQLTNFYVGGNKLSGNLP 388

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.8e-28, P = 5.8e-28
 Identities = 104/341 (30%), Positives = 163/341 (47%)

Query:     1 CQSDQKLLLIQMKNSF-IFDVDSTPPAKMSQWSESTDCCDWNGVDCDE-AGHVIGLDLSA 58
             C+ DQ+  L++ ++ F IF+  S+P      W+++TDCC W+GV CD+ +G VI LDL +
Sbjct:    32 CRHDQRDGLLKFRDEFPIFESKSSP------WNKTTDCCSWDGVTCDDKSGQVISLDLRS 85

Query:    59 EPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSL---PRLVTLDLSSREPISGFS 115
               +L  SL+  S LF LQYL+ L+L     +G  +PSSL    RL  L+LSS   +    
Sbjct:    86 T-LLNSSLKTNSSLFRLQYLRHLDLSGCNLHG-EIPSSLGNLSRLENLELSSNRLVGEIP 143

Query:   116 WRL----EIPNFNFFQN--LTELRE------LYLDNVDLSGRRT--EWCKAMSFLPNLQV 161
             + +    ++ N +   N  + E+        L LD +DL       E   ++  L  L+V
Sbjct:   144 YSIGNLKQLRNLSLGDNDLIGEIPSSLGNLSLLLD-LDLWNNSLVGEVPASIGNLNELRV 202

Query:   162 LNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGK 221
             ++L    LS  I     NL  LS  R+  N+  S  +P  ++   NL T D+S     G 
Sbjct:   203 MSLDRNSLSGSIPISFTNLTKLSEFRIFFNNFTS--LPSDLSGFHNLVTFDISANSFSGH 260

Query:   222 FPEKVLQVPTLETLDLSYNSLLQGSLPHFPXXXXXXXXXXXXT--SFSGKLPDSIGNLEN 279
             FP+ +  +P+L  + +  N    G +                T     G +P+SI    N
Sbjct:   261 FPKFLFSIPSLAWVSMDRNQF-SGPIEFANISSSSKLQNLILTRNKLDGSIPESISKFLN 319

Query:   280 LASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPT 320
             L  +DV+  N + P+P SM+ L  L    FS+N     +P+
Sbjct:   320 LVLLDVAHNNISGPVPRSMSKLVSLRIFGFSNNKLEGEVPS 360

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 1.5e-27, P = 1.5e-27
 Identities = 100/339 (29%), Positives = 172/339 (50%)

Query:     1 CQSDQKLLLIQMKNSF-------IFDVDS-----TPPAKMSQWSESTDCCDWNGVDCD-E 47
             C  DQ+  L++ KN F         D+D      T   K   W++++DCC W+G+ CD +
Sbjct:    36 CHPDQRDALLEFKNEFKIWYPNGFLDIDGVLMDVTSYPKTKSWTKNSDCCYWDGITCDTK 95

Query:    48 AGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLD-LS 106
             +G V GLDLS    L G LE  S LF LQ+LQS+NL +  F   P+P+   + + L+ L+
Sbjct:    96 SGKVTGLDLSCS-CLHGRLEPNSSLFRLQHLQSVNLAYNNFTNSPIPAEFSKFMRLERLN 154

Query:   107 -SREPISG-FSWRL-EIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLN 163
              SR   SG  S +L ++ N     +L+        ++ +         A++F+ NL+ L+
Sbjct:   155 LSRSSFSGHISIKLLQLTNLVSL-DLSSSFPYSPSSLSIEKPLFLHLLALNFM-NLRELD 212

Query:   164 LSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQ-CDLHGKF 222
             +S+  +S  I    + + SL  + L+  + +  + P  V  + NL ++ L    +L G  
Sbjct:   213 MSSVDISSAIPIEFSYMWSLRSLTLKGCNLLG-RFPNSVLLIPNLESISLDHNLNLEGSL 271

Query:   223 PEKVLQVPTLETLDLSYNSLLQGSLPH-FPXXXXXXXXXXXXTSFSGKLPDSIGNLENLA 281
             P   L+  +L  L + YN+   G++P+               ++FSG++P S+ +L +L+
Sbjct:   272 PN-FLRNNSLLKLSI-YNTSFSGTIPNSISNLKHLTSLKLQQSAFSGRIPSSLRSLSHLS 329

Query:   282 SVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPT 320
             ++ +S  NF   IP+S++NL QL   D S N+ +   P+
Sbjct:   330 NLVLSENNFVGEIPSSVSNLKQLTLFDVSDNNLNGNFPS 368

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.6e-27, P = 1.6e-27
 Identities = 105/337 (31%), Positives = 163/337 (48%)

Query:     1 CQSDQKLLLIQMKNSF-IFDVDSTPPAKM---SQWSESTDCCDWNGVDCD-EAGHVIGLD 55
             C  DQ+  L++ KN F I   DS     +   ++W  +TDCC W G+ CD + G V+ LD
Sbjct:    26 CLPDQRDALLEFKNEFSIPSPDSDLMLILQTTAKWRNNTDCCSWGGISCDPKTGVVVELD 85

Query:    56 LSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFS 115
             L     L G L + S LF LQ+LQSL+L +       +P S      L + +   + G +
Sbjct:    86 LGNSD-LNGRLRSNSSLFRLQHLQSLDLSYNDL-SCTLPDSSGNFKYLRVLN---LLGCN 140

Query:   116 WRLEIPNFNFFQNLTELRELYLD-NVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPIN 174
                EIP     ++L+ L +L L  N DL+G   E   +M  L +L+VL+L++C  +  I 
Sbjct:   141 LFGEIPTS--LRSLSYLTDLDLSYNDDLTG---EILDSMGNLKHLRVLSLTSCKFTGKIP 195

Query:   175 HHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLET 234
               L NL  L+ + L  N+    ++P+ + NL +L  L+L +C+  GK P  +  +  L  
Sbjct:   196 SSLGNLTYLTDLDLSWNYFTG-ELPDSMGNLKSLRVLNLHRCNFFGKIPTSLGSLSNLTD 254

Query:   235 LDLSYNSLL-QG-----SLPHFPXXXXXXXXXXXXTS-------FSGKLPDSIGNLENLA 281
             LD+S N    +G     SL                T+       F   LP ++ +L  L 
Sbjct:   255 LDISKNEFTSEGPDSMSSLNRLTDFQLMLLNLSSLTNVDLSSNQFKAMLPSNMSSLSKLE 314

Query:   282 SVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPI 318
             + D+S  +F+  IP+S+  L  L  LD  +N FS P+
Sbjct:   315 AFDISGNSFSGTIPSSLFMLPSLIKLDLGTNDFSGPL 351

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.1e-26, P = 3.1e-26
 Identities = 104/315 (33%), Positives = 158/315 (50%)

Query:    24 PPAKMSQW-SESTDCCDWNGVDCD-EAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSL 81
             P  K   W + ++DCC+W GV C+ ++G VI LDLS    L G   + S + +L +L +L
Sbjct:    68 PHPKTESWGNNNSDCCNWEGVTCNAKSGEVIELDLSCS-YLHGRFHSNSSIRNLHFLTTL 126

Query:    82 NLGFTLFYGFPMPS--SLPRLVTLDLS-----SREPIS-GFSWRLEIPNF--NFF--QNL 129
             +L F  F G  M S  +L  L  LDLS      + P S G    L   +   N F  Q  
Sbjct:   127 DLSFNDFKGQIMSSIENLSHLTYLDLSFNHFSGQVPSSIGNLSHLTFLDLYCNQFSGQVP 186

Query:   130 TELREL-YLDNVDLSGRRT--EWCKAMSFLPNLQVLNLS-NCLLSDPINHHLANLLSLSV 185
             + +  L +L  ++LS  R   ++  ++  L +L  LNL  N  L   I   + NL +L+ 
Sbjct:   187 SSIGNLSHLTTLELSFNRFFGQFPSSIGGLSHLTTLNLFVNNFLGQ-IPSSIGNLSNLTS 245

Query:   186 IRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQG 245
             + L  N+  S Q+P F+ NL  LT LDLS  +  G+ P  +  +P L  ++LSYN+ +  
Sbjct:   246 LYLCKNN-FSGQIPSFIGNLSQLTRLDLSSNNFFGEIPGWLWTLPNLFYVNLSYNTFIGF 304

Query:   246 SLPHFPXXXXXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANL-TQL 304
               P+ P             +F+GK+P  I  L +L ++D+S  NF+  IP  M NL + L
Sbjct:   305 QRPNKPEPSMGHLLGSN-NNFTGKIPSFICELRSLETLDLSDNNFSGLIPRCMGNLKSNL 363

Query:   305 FHLDFSSNHFSDPIP 319
              HL+   N+ S  +P
Sbjct:   364 SHLNLRQNNLSGGLP 378

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 4.5e-26, P = 4.5e-26
 Identities = 101/335 (30%), Positives = 155/335 (46%)

Query:     1 CQSDQKLLLIQMKNSF-----------IFDVDSTPPAKMSQWSESTDCCDWNGVDCD-EA 48
             C+ +Q+  L+  KN F           I+ ++S  P K   W  ++DCC+W GV C+ ++
Sbjct:    37 CRPEQRDALLAFKNEFEIGKPSPDHCKIYGIES--PRKTDSWGNNSDCCNWEGVTCNAKS 94

Query:    49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS--SLPRLVTLDLS 106
             G VI LDLS    L G   + S + +L +L +L+L F  F G    S  +L  L  LDLS
Sbjct:    95 GEVIELDLSCSS-LHGRFHSNSSIRNLHFLTTLDLSFNDFKGQITSSIENLSHLTYLDLS 153

Query:   107 SREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSN 166
             S      FS ++     N   NL+ L  L L +   SG+      ++  L +L  L+LS 
Sbjct:   154 SNH----FSGQI----LNSIGNLSRLTYLNLFDNQFSGQAPS---SICNLSHLTFLDLSY 202

Query:   167 CLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKV 226
                       +  L  L+ + L  N   S Q+P  + NL NLTTLDLS  +  G+ P  +
Sbjct:   203 NRFFGQFPSSIGGLSHLTTLSLFSNK-FSGQIPSSIGNLSNLTTLDLSNNNFSGQIPSFI 261

Query:   227 LQVPTLETLDLSYNSLLQGSLPH-FPXXXXXXXXXXXXTSFSGKLPDSIGNLENLASVDV 285
               +  L  L L  N+ + G +P  F                SG  P+ + NL  L+ + +
Sbjct:   262 GNLSQLTFLGLFSNNFV-GEIPSSFGNLNQLTRLYVDDNKLSGNFPNVLLNLTGLSLLSL 320

Query:   286 SSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPT 320
             S+  FT  +P ++ +L+ L   D S N F+   P+
Sbjct:   321 SNNKFTGTLPPNITSLSNLMDFDASDNAFTGTFPS 355

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 7.5e-26, P = 7.5e-26
 Identities = 100/321 (31%), Positives = 147/321 (45%)

Query:     1 CQSDQKLLLIQMKNSFIFDVD-STPPAKMSQWSESTDCCDWNGVDC-DEAGHVIGLDLSA 58
             C+ DQ+  L++ +  F  +            W++STDCC WNGV C D++G VI LD+  
Sbjct:    34 CRDDQRDALLEFRGEFPINASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIP- 92

Query:    59 EPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRL 118
                L   L+  S LF LQYL+ L+L     YG  +PSSL  L  L L +    + F    
Sbjct:    93 NTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYG-EIPSSLGNLSHLTLVNLY-FNKFVG-- 148

Query:   119 EIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLA 178
             EIP      NL +LR L L N  L+G        +S L NL++   SN L+   I   + 
Sbjct:   149 EIPAS--IGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELF--SNRLVGK-IPDSIG 203

Query:   179 NLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLS 238
             +L  L  + L  N+ +  ++P  + NL NL  L L+   L G+ P  +  +  L  +   
Sbjct:   204 DLKQLRNLSLASNNLIG-EIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFE 262

Query:   239 YNSLLQGSLP-HFPXXXXXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTS 297
              NSL  G++P  F              +F+   P  +    NL   DVS  +F+ P P S
Sbjct:   263 NNSL-SGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKS 321

Query:   298 MANLTQLFHLDFSSNHFSDPI 318
             +  +  L  +    N F+ PI
Sbjct:   322 LLLIPSLESIYLQENQFTGPI 342

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 2.0e-25, P = 2.0e-25
 Identities = 103/342 (30%), Positives = 159/342 (46%)

Query:     1 CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCDWNGVDCDEA-GHVIGLDLSAE 59
             C+SDQ+  L+++K  F    + +       W+++ DCC W GV CD   G VI L+L + 
Sbjct:    37 CRSDQRDALLELKKEFPIHSNGSHHVTTLSWNKTVDCCSWEGVTCDATLGEVISLNLVSY 96

Query:    60 PILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSS---LPRLVTLDLSSRE-----PI 111
              I   SL+++S LF L++L+ L L      G  +PSS   L  L  LDLS  +     P+
Sbjct:    97 -IANTSLKSSSSLFKLRHLRHLELSHCNLQG-EIPSSIGNLSHLTYLDLSFNQLVGEFPV 154

Query:   112 S-GFSWRLEIPNF-------NF---FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQ 160
             S G   +LE  +        N    F NLT+L EL+L     +G        +S L +L 
Sbjct:   155 SIGNLNQLEYIDLWVNALGGNIPTSFANLTKLSELHLRQNQFTGGDI----VLSNLTSLS 210

Query:   161 VLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHG 220
             +++LS+   +  I+  L+ L +L    + +N       P F+  + +L  + LS+    G
Sbjct:   211 IVDLSSNYFNSTISADLSQLHNLERFWVSENSFFG-PFPSFLLMIPSLVDICLSENQFEG 269

Query:   221 KFP-EKVLQVPTLETLDLSYNSLLQGSLPH-FPXXXXXXXXXXXXTSFSGKLPDSIGNLE 278
                         L  LD+SYN+L  G +P                 +F G++P SI  L 
Sbjct:   270 PINFGNTTSSSKLTELDVSYNNL-DGLIPKSISTLVSLEHLELSHNNFRGQVPSSISKLV 328

Query:   279 NLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPT 320
             NL  + +S  NF   +P+S+  L  L HLD S N F   +P+
Sbjct:   329 NLDGLYLSHNNFGGQVPSSIFKLVNLEHLDLSHNDFGGRVPS 370

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 3.4e-25, P = 3.4e-25
 Identities = 100/332 (30%), Positives = 156/332 (46%)

Query:     1 CQSDQKLLLIQMKNSF--IFD--VDSTPPAKMSQWSESTDCCDWNGVDCD-EAGHVIGLD 55
             C  DQ   +++ KN F  + +   DS  P K   W+ ++DCC W+G+ CD + G VI LD
Sbjct:    30 CDPDQSDAILEFKNEFETLEESCFDSNIPLKTESWTNNSDCCYWDGIKCDAKFGDVIELD 89

Query:    56 LSAEPILIGSLENASGLF---SLQYLQSLNLGFTLFYGFPMPSSLP---RLVTLDLSSRE 109
             LS    L G L + S LF    L++L +L+L    F G  +PSSL     L TLDLS R 
Sbjct:    90 LSFS-CLRGQLNSNSSLFRLPQLRFLTTLDLSNNDFIG-QIPSSLETLSNLTTLDLS-RN 146

Query:   110 PISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLL 169
               SG      IP+     NL+ L  +   + + SG+      ++ +L +L   NLS    
Sbjct:   147 HFSG-----RIPSS--IGNLSHLIFVDFSHNNFSGQIPS---SLGYLSHLTSFNLSYNNF 196

Query:   170 SDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQV 229
             S  +   + NL  L+ +RL  N     ++P  + +L +LT L L      GK P  +  +
Sbjct:   197 SGRVPSSIGNLSYLTTLRLSRNSFFG-ELPSSLGSLFHLTDLILDTNHFVGKIPSSLGNL 255

Query:   230 PTLETLDLSYNSLLQGSLPH-FPXXXXXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSC 288
               L ++DL  N+ + G +P                 +  G++P S GNL  L  ++V S 
Sbjct:   256 SHLTSIDLHKNNFV-GEIPFSLGNLSCLTSFILSDNNIVGEIPSSFGNLNQLDILNVKSN 314

Query:   289 NFTRPIPTSMANLTQLFHLDFSSNHFSDPIPT 320
               +   P ++ NL +L  L   +N  +  +P+
Sbjct:   315 KLSGSFPIALLNLRKLSTLSLFNNRLTGTLPS 346

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XVI.3792.1 hypothetical protein (1032 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	348
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  112 bits (282), Expect = 3e-27
 Identities = 105/340 (30%), Positives = 162/340 (47%), Gaps = 52/340 (15%)

Query: 8   LLIQMKNSFIFDVDSTPPAKMSQWSESTDCCDWNGVDCDEAGHVIGLDLSAEPILIGSLE 67
           LL+  K+S      + P   +S W+ S D C W G+ C+ +  V+ +DLS + I   S +
Sbjct: 33  LLLSFKSSI-----NDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNI---SGK 84

Query: 68  NASGLFSLQYLQSLNLGFTLFYGFPMP----SSLPRLVTLDLSSREPISGFSWRLEIPNF 123
            +S +F L Y+Q++NL      G P+P    ++   L  L+LS+    +G   R  IPN 
Sbjct: 85  ISSAIFRLPYIQTINLSNNQLSG-PIPDDIFTTSSSLRYLNLSNNN-FTGSIPRGSIPN- 141

Query: 124 NFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSL 183
                   L  L L N  LSG   E    +    +L+VL+L   +L   I + L NL SL
Sbjct: 142 --------LETLDLSNNMLSG---EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190

Query: 184 SVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLL 243
             + L  N  V  Q+P  +  + +L  + L   +L G+ P ++  + +L  LDL YN+L 
Sbjct: 191 EFLTLASNQLVG-QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL- 248

Query: 244 QGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQ 303
                                  +G +P S+GNL+NL  + +     + PIP S+ +L +
Sbjct: 249 -----------------------TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK 285

Query: 304 LFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGI 343
           L  LD S N  S  IP L + + +NL  L+L SN+ TG I
Sbjct: 286 LISLDLSDNSLSGEIPELVIQL-QNLEILHLFSNNFTGKI 324

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 88.0 bits (218), Expect = 5e-19
 Identities = 98/301 (32%), Positives = 139/301 (46%), Gaps = 23/301 (7%)

Query: 51  VIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMP---SSLPRLVTLDLSS 107
           +I LDLS   +   S E    +  LQ L+ L+L    F G  +P   +SLPRL  L L S
Sbjct: 286 LISLDLSDNSL---SGEIPELVIQLQNLEILHLFSNNFTG-KIPVALTSLPRLQVLQLWS 341

Query: 108 REPISGFSWRLEIP-NFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSN 166
            +  SG     EIP N     NLT L    L   +L+G   E    +    NL  L L +
Sbjct: 342 NK-FSG-----EIPKNLGKHNNLTVLD---LSTNNLTGEIPE---GLCSSGNLFKLILFS 389

Query: 167 CLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKV 226
             L   I   L    SL  +RL+DN   S ++P     L  +  LD+S  +L G+   + 
Sbjct: 390 NSLEGEIPKSLGACRSLRRVRLQDNS-FSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448

Query: 227 LQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVS 286
             +P+L+ L L+ N    G LP    +  L NL+L    FSG +P  +G+L  L  + +S
Sbjct: 449 WDMPSLQMLSLARNKFF-GGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507

Query: 287 SCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSN 346
               +  IP  +++  +L  LD S N  S  IP     M   L+ L+LS N L+G I  N
Sbjct: 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV-LSQLDLSQNQLSGEIPKN 566

Query: 347 I 347
           +
Sbjct: 567 L 567

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 79.1 bits (195), Expect = 4e-16
 Identities = 90/314 (28%), Positives = 142/314 (45%), Gaps = 34/314 (10%)

Query: 54  LDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLD---LSSREP 110
           LDLS   +L G + N  G FS   L+ L+LG  +  G  +P+SL  L +L+   L+S + 
Sbjct: 145 LDLSNN-MLSGEIPNDIGSFS--SLKVLDLGGNVLVG-KIPNSLTNLTSLEFLTLASNQL 200

Query: 111 ISGFSWRL------------------EIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA 152
           +      L                  EIP       LT L  L L   +L+G       +
Sbjct: 201 VGQIPRELGQMKSLKWIYLGYNNLSGEIPYE--IGGLTSLNHLDLVYNNLTG---PIPSS 255

Query: 153 MSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLD 212
           +  L NLQ L L    LS PI   + +L  L  + L DN ++S ++PE V  L NL  L 
Sbjct: 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILH 314

Query: 213 LSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPD 272
           L   +  GK P  +  +P L+ L L  N        +  K+++L  L+L   + +G++P+
Sbjct: 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374

Query: 273 SIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNL-NY 331
            + +  NL  + + S +    IP S+     L  +    N FS  +P    +    L  +
Sbjct: 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP--SEFTKLPLVYF 432

Query: 332 LNLSSNDLTGGISS 345
           L++S+N+L G I+S
Sbjct: 433 LDISNNNLQGRINS 446

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 75.7 bits (186), Expect = 6e-15
 Identities = 47/146 (32%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 204 NLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPH--FPKNSSLRNLNL 261
           N   + ++DLS  ++ GK    + ++P ++T++LS N L  G +P   F  +SSLR LNL
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNL 125

Query: 262 KNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTL 321
            N +F+G +P   G++ NL ++D+S+   +  IP  + + + L  LD   N     IP  
Sbjct: 126 SNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 322 RLYMSRNLNYLNLSSNDLTGGISSNI 347
              ++  L +L L+SN L G I   +
Sbjct: 184 LTNLTS-LEFLTLASNQLVGQIPREL 208

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.9 bits (153), Expect = 9e-11
 Identities = 59/218 (27%), Positives = 102/218 (46%), Gaps = 8/218 (3%)

Query: 132 LRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDN 191
           LR + L +   SG   E     + LP +  L++SN  L   IN    ++ SL ++ L  N
Sbjct: 406 LRRVRLQDNSFSG---ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462

Query: 192 HAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLP-HF 250
                 +P+   +   L  LDLS+    G  P K+  +  L  L LS N L  G +P   
Sbjct: 463 -KFFGGLPDSFGSK-RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL-SGEIPDEL 519

Query: 251 PKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFS 310
                L +L+L +   SG++P S   +  L+ +D+S    +  IP ++ N+  L  ++ S
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579

Query: 311 SNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNIL 348
            NH    +P+   +++ N + +   + DL GG +++ L
Sbjct: 580 HNHLHGSLPSTGAFLAINASAVA-GNIDLCGGDTTSGL 616

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 7e-07
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 240 NSLLQGSLPH-FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSM 298
           N  L+G +P+   K   L+++NL   S  G +P S+G++ +L  +D+S  +F   IP S+
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 299 ANLTQLFHLDFSSNHFSDPIP 319
             LT L  L+ + N  S  +P
Sbjct: 487 GQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 249 HFPKNSS---LRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLF 305
            F        +  L L N    G +P+ I  L +L S+++S  +    IP S+ ++T L 
Sbjct: 410 QFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE 469

Query: 306 HLDFSSNHFSDPIP-TLRLYMSRNLNYLNLSSNDLTG 341
            LD S N F+  IP +L    S  L  LNL+ N L+G
Sbjct: 470 VLDLSYNSFNGSIPESLGQLTS--LRILNLNGNSLSG 504

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 5/140 (3%)

Query: 200 EFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNL 259
           E + NLL L +LDL+   L      ++L++  L +LDL  N++           S+L+ L
Sbjct: 87  ENLLNLLPLPSLDLNLNRL-RSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKEL 145

Query: 260 NLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIP 319
           +L +      LP  + NL NL ++D+S  + +  +P  ++NL+ L +LD S N  SD +P
Sbjct: 146 DLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKISD-LP 202

Query: 320 TLRLYMSRNLNYLNLSSNDL 339
              + +   L  L+LS+N +
Sbjct: 203 PE-IELLSALEELDLSNNSI 221

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 6e-05
 Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 11/229 (4%)

Query: 120 IPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLAN 179
             N +    LT L  L LDN +++              NL+ L+LS+  +   +   L N
Sbjct: 106 RSNISELLELTNLTSLDLDNNNITDIPPLIGL---LKSNLKELDLSDNKIES-LPSPLRN 161

Query: 180 LLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSY 239
           L +L  + L  N      +P+ ++NL NL  LDLS   +    P ++  +  LE LDLS 
Sbjct: 162 LPNLKNLDLSFND--LSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN 218

Query: 240 NSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMA 299
           NS+++  L       +L  L L N      LP+SIGNL NL ++D+S+   +    +S+ 
Sbjct: 219 NSIIE-LLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI--SSLG 274

Query: 300 NLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNIL 348
           +LT L  LD S N  S+ +P + L +      LNL        +  N +
Sbjct: 275 SLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSI 323

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 35/160 (21%)

Query: 166 NCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEK 225
           +C           + L L      DN  +   +P  ++ L +L +++LS   + G  P  
Sbjct: 408 DCQFDSTKGKWFIDGLGL------DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS 461

Query: 226 VLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDV 285
           +  + +LE LDLSYNS                        F+G +P+S+G L +L  +++
Sbjct: 462 LGSITSLEVLDLSYNS------------------------FNGSIPESLGQLTSLRILNL 497

Query: 286 SSCNFTRPIPTSMANLTQLFH---LDFSSNHFSDPIPTLR 322
           +  + +  +P ++     L H    +F+ N     IP LR
Sbjct: 498 NGNSLSGRVPAALGGR--LLHRASFNFTDNAGLCGIPGLR 535

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 3  SDQKLLLIQMKNSFIFDVDSTPPAKMSQWSES-TDCCDWNGVDCD 46
          +D +  L+  K+S     +  P   +S W+ S +D C W GV CD
Sbjct: 2  NDDRDALLAFKSSL----NGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 35/160 (21%)

Query: 95  SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS 154
            +   L  L+L++   I     R         + L     L + +++ +G   E   A++
Sbjct: 162 RANRDLKELNLAN-NGIGDAGIRA------LAEGLKANCNLEVLDLNNNGLTDEGASALA 214

Query: 155 ----FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTT 210
                L +L+VLNL +  L+D     LA+ L    I L                     T
Sbjct: 215 ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLL--------------------T 254

Query: 211 LDLSQCDLHGKFPEKVLQV----PTLETLDLSYNSLLQGS 246
           L LS  D+     + + +V     +L  LDL  N   +  
Sbjct: 255 LSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 6e-04
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 255 SLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHF 314
           +L++L+L N   +     +   L NL  +D+S  N T   P + + L  L  LD S N+ 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 35/138 (25%), Positives = 50/138 (36%), Gaps = 51/138 (36%)

Query: 139 NVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQV 198
            +D  G R      +S L +LQ +NLS   +                             
Sbjct: 424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSI----------------------------- 454

Query: 199 PEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPH-FPKNSSLR 257
                                G  P  +  + +LE LDLSYNS   GS+P    + +SLR
Sbjct: 455 --------------------RGNIPPSLGSITSLEVLDLSYNS-FNGSIPESLGQLTSLR 493

Query: 258 NLNLKNTSFSGKLPDSIG 275
            LNL   S SG++P ++G
Sbjct: 494 ILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 46/217 (21%), Positives = 82/217 (37%), Gaps = 29/217 (13%)

Query: 152 AMSFLPNLQVLNLSNCLLSDPINHHLANLL---SLSVIRLRDNHAVSCQVPEFVA----- 203
            ++    LQ L+LS+  L       L +LL   SL  ++L +N  +  +    +A     
Sbjct: 76  GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKD 134

Query: 204 NLLNLTTLDLSQCDLHGKFPE---KVLQV-PTLETLDLSYNSLLQGSLPH----FPKNSS 255
               L  L L +  L G   E   K L+    L+ L+L+ N +    +         N +
Sbjct: 135 LPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCN 194

Query: 256 LRNLNLKNTSF----SGKLPDSIGNLENLASVDVSSCNFTRPI-----PTSMANLTQLFH 306
           L  L+L N       +  L +++ +L++L  +++   N T           ++    L  
Sbjct: 195 LEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT 254

Query: 307 LDFSSNHFSDP-IPTLRLYMSRN--LNYLNLSSNDLT 340
           L  S N  +D     L   ++    L  L+L  N   
Sbjct: 255 LSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 62/246 (25%), Positives = 102/246 (41%), Gaps = 39/246 (15%)

Query: 66  LENASGLFSLQYLQSLNL-GFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFN 124
           LE      +L+ L  LNL G +    FP  S+    + LD ++ E         E P+  
Sbjct: 694 LEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE---------EFPSNL 744

Query: 125 FFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLS 184
             +NL EL    + +  L  R       M+ L                         SL+
Sbjct: 745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP-----------------------SLT 781

Query: 185 VIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQ 244
            + L D  ++  ++P  + NL  L  L++  C      P  +  + +LE+LDLS  S L+
Sbjct: 782 RLFLSDIPSL-VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR 839

Query: 245 GSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQL 304
            + P    N S  +LNL  T    ++P  I    NL+ +D++ CN  + +  +++ L  L
Sbjct: 840 -TFPDISTNIS--DLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHL 895

Query: 305 FHLDFS 310
             +DFS
Sbjct: 896 ETVDFS 901

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.93
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.89
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.78
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.77
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.73
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.72
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.7
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.68
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.66
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.63
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.5
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.5
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.49
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.38
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.3
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.27
PLN03150	623	hypothetical protein; Provisional	99.27
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.11
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.04
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.01
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.0
PLN03150	623	hypothetical protein; Provisional	98.99
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.99
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.97
KOG4341	483	consensus F-box protein containing LRR [General fu	98.84
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.82
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.74
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.71
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.7
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.7
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.69
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.67
KOG4341	483	consensus F-box protein containing LRR [General fu	98.6
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.55
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.54
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.54
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.52
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.51
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.46
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.43
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.21
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.19
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.08
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.93
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.89
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.89
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.88
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.8
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.75
PRK15386	426	type III secretion protein GogB; Provisional	97.73
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.68
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.64
PRK15386	426	type III secretion protein GogB; Provisional	97.64
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.43
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.28
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.15
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.95
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.84
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.78
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.21
KOG4308	478	consensus LRR-containing protein [Function unknown	95.79
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.17
KOG4308	478	consensus LRR-containing protein [Function unknown	94.17
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.48
smart00370	26	LRR Leucine-rich repeats, outliers.	93.48
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.77
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.42
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	90.68
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	87.29

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.9e-37  Score=311.07  Aligned_cols=330  Identities=31%  Similarity=0.468  Sum_probs=214.2

Q ss_pred             chHHHHHHHHHhhhCccCCCCCCcccCCCCCCCCCCccccceEeCCCCCEEEEeCCCCccccccccCCcccccccccCEE
Q 035693            2 QSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSL   81 (348)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L   81 (348)
                      +.+|..+|..||+++. +|.    ..+.+|..+.++|.|.|++|+...+|+.|+|+++ .+.+.++.  .+..+++|+.|
T Consensus        27 ~~~~~~~l~~~~~~~~-~~~----~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~-~i~~~~~~--~~~~l~~L~~L   98 (968)
T PLN00113         27 HAEELELLLSFKSSIN-DPL----KYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGK-NISGKISS--AIFRLPYIQTI   98 (968)
T ss_pred             CHHHHHHHHHHHHhCC-CCc----ccCCCCCCCCCCCcCcceecCCCCcEEEEEecCC-CccccCCh--HHhCCCCCCEE
Confidence            4678999999999983 333    5689999999999999999987789999999999 88777765  78899999999


Q ss_pred             eCCCCCCCCCCCCC----CCCCCcEEecCCCCCCCCcc----------------eeecCCChhhhcCCCCCcEEEccCcC
Q 035693           82 NLGFTLFYGFPMPS----SLPRLVTLDLSSREPISGFS----------------WRLEIPNFNFFQNLTELRELYLDNVD  141 (348)
Q Consensus        82 ~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~----------------~~~~~~~~~~~~~l~~L~~L~l~~~~  141 (348)
                      ++++|.+++. +|.    .+++|++|++++|.+.+...                ....+|..  +.++++|++|++++|.
T Consensus        99 ~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~--~~~l~~L~~L~L~~n~  175 (968)
T PLN00113         99 NLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND--IGSFSSLKVLDLGGNV  175 (968)
T ss_pred             ECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH--HhcCCCCCEEECccCc
Confidence            9999988765 554    67888888888887642100                01112222  4445555555555555


Q ss_pred             CCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCc
Q 035693          142 LSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGK  221 (348)
Q Consensus       142 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  221 (348)
                      +....+   ..+.++++|++|++++|.+.+.+|..+..+++|++|++++| ...+..+..+..+++|++|++++|.+.+.
T Consensus       176 l~~~~p---~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  251 (968)
T PLN00113        176 LVGKIP---NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN-NLSGEIPYEIGGLTSLNHLDLVYNNLTGP  251 (968)
T ss_pred             ccccCC---hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC-ccCCcCChhHhcCCCCCEEECcCceeccc
Confidence            443332   33445555555555555555545555555555555555555 23334455555555666666666655555


Q ss_pred             ccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCC
Q 035693          222 FPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANL  301 (348)
Q Consensus       222 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~  301 (348)
                      .|..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+
T Consensus       252 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l  331 (968)
T PLN00113        252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL  331 (968)
T ss_pred             cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC
Confidence            55555556666666666655544444445555666666666666665666666666666677776666666666666666


Q ss_pred             CCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCCC
Q 035693          302 TQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNI  347 (348)
Q Consensus       302 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~~  347 (348)
                      ++|+.|++++|.+.+.+|..+... ++|+.|++++|.++|.+|.++
T Consensus       332 ~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~~~  376 (968)
T PLN00113        332 PRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLTGEIPEGL  376 (968)
T ss_pred             CCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCeeEeeCChhH
Confidence            777777777777766566544433 667777777777777776543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=1.2e-30  Score=264.49  Aligned_cols=287  Identities=31%  Similarity=0.389  Sum_probs=238.3

Q ss_pred             CCEEEEeCCCCccccccccCCcccc-cccccCEEeCCCCCCCCCCCCC-CCCCCcEEecCCCCCCCCcc-----------
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLF-SLQYLQSLNLGFTLFYGFPMPS-SLPRLVTLDLSSREPISGFS-----------  115 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~-----------  115 (348)
                      ++|+.|+|++| .+.+.+|.  .+. .+++|++|++++|.+++. +|. .+++|++|++++|.+.....           
T Consensus        93 ~~L~~L~Ls~n-~~~~~ip~--~~~~~l~~L~~L~Ls~n~l~~~-~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~  168 (968)
T PLN00113         93 PYIQTINLSNN-QLSGPIPD--DIFTTSSSLRYLNLSNNNFTGS-IPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV  168 (968)
T ss_pred             CCCCEEECCCC-ccCCcCCh--HHhccCCCCCEEECcCCccccc-cCccccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence            67888999988 77777775  443 777888888877777654 443 45555555555554432100           


Q ss_pred             -------eeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEc
Q 035693          116 -------WRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRL  188 (348)
Q Consensus       116 -------~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  188 (348)
                             ....+|..  +.++++|++|++++|.+....+   ..+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus       169 L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  243 (968)
T PLN00113        169 LDLGGNVLVGKIPNS--LTNLTSLEFLTLASNQLVGQIP---RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL  243 (968)
T ss_pred             EECccCcccccCChh--hhhCcCCCeeeccCCCCcCcCC---hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence                   12234444  7899999999999999886655   57889999999999999999889999999999999999


Q ss_pred             ccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCC
Q 035693          189 RDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSG  268 (348)
Q Consensus       189 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~  268 (348)
                      ++| ...+..+..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+
T Consensus       244 ~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~  322 (968)
T PLN00113        244 VYN-NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG  322 (968)
T ss_pred             cCc-eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence            999 4555778889999999999999999988889899999999999999998766666667789999999999999998


Q ss_pred             CCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCC
Q 035693          269 KLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSN  346 (348)
Q Consensus       269 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~  346 (348)
                      ..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+... ++|+.|++++|.++|.+|..
T Consensus       323 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~~p~~  399 (968)
T PLN00113        323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKS  399 (968)
T ss_pred             cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc-CCCCEEECcCCEecccCCHH
Confidence            889999999999999999999998899999999999999999999998888766543 78999999999999999864

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.93  E-value=1.4e-26  Score=206.65  Aligned_cols=285  Identities=25%  Similarity=0.214  Sum_probs=181.2

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceee-------
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRL-------  118 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~-------  118 (348)
                      ...++|++++| .+..--+.  .+.++++|+.+++..|.++.  +|.   ...+|++|++.+|.+.....-.+       
T Consensus        78 ~~t~~LdlsnN-kl~~id~~--~f~nl~nLq~v~l~~N~Lt~--IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr  152 (873)
T KOG4194|consen   78 SQTQTLDLSNN-KLSHIDFE--FFYNLPNLQEVNLNKNELTR--IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR  152 (873)
T ss_pred             cceeeeecccc-ccccCcHH--HHhcCCcceeeeeccchhhh--cccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence            45778999998 77644443  56788889998888888877  455   34457777777776543200000       


Q ss_pred             ----------cCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEc
Q 035693          119 ----------EIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRL  188 (348)
Q Consensus       119 ----------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  188 (348)
                                .++. ..+..-.++++|+|++|++++...   ..|..+.+|..|.++.|.++...+..|+++++|+.|+|
T Consensus       153 slDLSrN~is~i~~-~sfp~~~ni~~L~La~N~It~l~~---~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL  228 (873)
T KOG4194|consen  153 SLDLSRNLISEIPK-PSFPAKVNIKKLNLASNRITTLET---GHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDL  228 (873)
T ss_pred             hhhhhhchhhcccC-CCCCCCCCceEEeecccccccccc---ccccccchheeeecccCcccccCHHHhhhcchhhhhhc
Confidence                      0110 123333456666666666665544   44555556666666666666655556666666666666


Q ss_pred             ccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCC
Q 035693          189 RDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSG  268 (348)
Q Consensus       189 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~  268 (348)
                      ..|++ ...-...|.++++|+.|.+..|.+...--..|..+.++++|+++.|++....-..+.++..|+.|+++.|.+..
T Consensus       229 nrN~i-rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r  307 (873)
T KOG4194|consen  229 NRNRI-RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR  307 (873)
T ss_pred             cccce-eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe
Confidence            66632 22223345666666666666666653333346666777777777776665556666667777777777777765


Q ss_pred             CCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCC
Q 035693          269 KLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGIS  344 (348)
Q Consensus       269 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip  344 (348)
                      .-++.+.-+++|++|+|++|+++..-++.+..+..|++|+|+.|.+.. +....+.++.+|+.|||+.|.+++.|-
T Consensus       308 ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IE  382 (873)
T KOG4194|consen  308 IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIE  382 (873)
T ss_pred             eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence            556666666777777777777777666666667777777777777754 555666666888888888888876653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.93  E-value=5.2e-27  Score=209.26  Aligned_cols=281  Identities=24%  Similarity=0.304  Sum_probs=231.4

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC--CCCCCcEEecCCCCCCCCcceeecCCChhhh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS--SLPRLVTLDLSSREPISGFSWRLEIPNFNFF  126 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  126 (348)
                      +|++.|+|..| .+...-..  .++.++.|+.|||+.|.|+....+.  .-.++++|++++|.+++.     ..   ..|
T Consensus       125 ghl~~L~L~~N-~I~sv~se--~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l-----~~---~~F  193 (873)
T KOG4194|consen  125 GHLEKLDLRHN-LISSVTSE--ELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTL-----ET---GHF  193 (873)
T ss_pred             cceeEEeeecc-ccccccHH--HHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccc-----cc---ccc
Confidence            57888888877 55433332  6777888999999998888754444  445899999999987632     22   336


Q ss_pred             cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCC
Q 035693          127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLL  206 (348)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~  206 (348)
                      ..+.+|..|.|+.|+++..+.   ..|.++++|+.|++..|.+...-.-.|..+++|+.|.+..|.+ ..--...|..+.
T Consensus       194 ~~lnsL~tlkLsrNrittLp~---r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I-~kL~DG~Fy~l~  269 (873)
T KOG4194|consen  194 DSLNSLLTLKLSRNRITTLPQ---RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI-SKLDDGAFYGLE  269 (873)
T ss_pred             cccchheeeecccCcccccCH---HHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc-ccccCcceeeec
Confidence            778899999999999999887   6788899999999999999876577899999999999999954 333455678899


Q ss_pred             CCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeec
Q 035693          207 NLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVS  286 (348)
Q Consensus       207 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~  286 (348)
                      ++++|+++.|++...-..++..+++|+.|+++.|.+...........++|+.|+++.|+++..-+..+..+..|++|.|+
T Consensus       270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs  349 (873)
T KOG4194|consen  270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS  349 (873)
T ss_pred             ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence            99999999999986666778999999999999999888888888889999999999999996666788899999999999


Q ss_pred             CCccCCCCcccccCCCCCCEEeCCCCccCCccCc--hhhhhhcCCCeeecccCcccccCCC
Q 035693          287 SCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPT--LRLYMSRNLNYLNLSSNDLTGGISS  345 (348)
Q Consensus       287 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~--~~~~~~~~L~~L~l~~n~l~g~ip~  345 (348)
                      +|.+...-..++..+++|+.|||++|.+...+..  ..+.++++|+.|++.+|++. .||.
T Consensus       350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~k  409 (873)
T KOG4194|consen  350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPK  409 (873)
T ss_pred             ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecch
Confidence            9999986666788899999999999998753332  34455699999999999996 7775

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.89  E-value=4.6e-25  Score=198.61  Aligned_cols=246  Identities=26%  Similarity=0.382  Sum_probs=109.3

Q ss_pred             CEEEEeCCCCcccc-ccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693           50 HVIGLDLSAEPILI-GSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF  125 (348)
Q Consensus        50 ~l~~L~ls~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  125 (348)
                      -|+.+|+++| .+. +..|.  .+..|+.++.|.|....+..  +|+   .+.+|++|.+++|.+.+       +.  ..
T Consensus         8 FVrGvDfsgN-DFsg~~FP~--~v~qMt~~~WLkLnrt~L~~--vPeEL~~lqkLEHLs~~HN~L~~-------vh--GE   73 (1255)
T KOG0444|consen    8 FVRGVDFSGN-DFSGDRFPH--DVEQMTQMTWLKLNRTKLEQ--VPEELSRLQKLEHLSMAHNQLIS-------VH--GE   73 (1255)
T ss_pred             eeecccccCC-cCCCCcCch--hHHHhhheeEEEechhhhhh--ChHHHHHHhhhhhhhhhhhhhHh-------hh--hh
Confidence            3555556655 333 33443  45555555555555544443  343   44555555555554321       11  11


Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL  205 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l  205 (348)
                      +..+|.|+.+.+..|++.....  +..+..+..|..|++++|.+.. .|..+...+++-.|+|++|. +.....+.+-++
T Consensus        74 Ls~Lp~LRsv~~R~N~LKnsGi--P~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~-IetIPn~lfinL  149 (1255)
T KOG0444|consen   74 LSDLPRLRSVIVRDNNLKNSGI--PTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNN-IETIPNSLFINL  149 (1255)
T ss_pred             hccchhhHHHhhhccccccCCC--Cchhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCc-cccCCchHHHhh
Confidence            3444445555554444432211  1234444455555555554443 44444444444455555542 222222333344


Q ss_pred             CCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCC-CCCCccccCCCCCCEEe
Q 035693          206 LNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFS-GKLPDSIGNLENLASVD  284 (348)
Q Consensus       206 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~-~~~~~~l~~~~~L~~L~  284 (348)
                      ..|-+|++++|++. .+|+.+..+..|++|.+++|++.......+..+.+|+.|.+++.+-+ ..+|.++..+.+|+.++
T Consensus       150 tDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD  228 (1255)
T KOG0444|consen  150 TDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD  228 (1255)
T ss_pred             HhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence            44444555555444 44444444444555555554443333333333444444444444322 12344444444444444


Q ss_pred             ecCCccCCCCcccccCCCCCCEEeCCCCccC
Q 035693          285 VSSCNFTRPIPTSMANLTQLFHLDFSSNHFS  315 (348)
Q Consensus       285 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~  315 (348)
                      ++.|.+.. +|+.+-.+++|+.|+|++|+|+
T Consensus       229 lS~N~Lp~-vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  229 LSENNLPI-VPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             ccccCCCc-chHHHhhhhhhheeccCcCcee
Confidence            44444443 4444444444444444444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=7.5e-25  Score=197.29  Aligned_cols=275  Identities=24%  Similarity=0.301  Sum_probs=152.1

Q ss_pred             CEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhh
Q 035693           50 HVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFF  126 (348)
Q Consensus        50 ~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  126 (348)
                      ++++|.++.| .+.. +.  +.+..++.|+.+.++.|++...++|.   .+..|..|++++|.+.       .+|..  +
T Consensus        56 kLEHLs~~HN-~L~~-vh--GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-------EvP~~--L  122 (1255)
T KOG0444|consen   56 KLEHLSMAHN-QLIS-VH--GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-------EVPTN--L  122 (1255)
T ss_pred             hhhhhhhhhh-hhHh-hh--hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-------hcchh--h
Confidence            5666666666 4431 21  25566666777777777666666666   5666677777776643       44444  5


Q ss_pred             cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCC--------------
Q 035693          127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNH--------------  192 (348)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--------------  192 (348)
                      ..-+++-+|+|++|++..++.   .-+.++..|-.|++++|.+.. +|..+..+..|++|.|++|+              
T Consensus       123 E~AKn~iVLNLS~N~IetIPn---~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts  198 (1255)
T KOG0444|consen  123 EYAKNSIVLNLSYNNIETIPN---SLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS  198 (1255)
T ss_pred             hhhcCcEEEEcccCccccCCc---hHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchh
Confidence            555566666666666655544   234445555555555555444 34344444455555555543              


Q ss_pred             ----------CCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcc
Q 035693          193 ----------AVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLK  262 (348)
Q Consensus       193 ----------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls  262 (348)
                                ..-..+|..+..+.+|..++++.|.+. .+|+.+..+++|+.|++++|.++.. -.......+|++|++|
T Consensus       199 L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlS  276 (1255)
T KOG0444|consen  199 LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLS  276 (1255)
T ss_pred             hhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccc
Confidence                      222334444444555555555555554 4555555555566666665554211 1122224456666666


Q ss_pred             cCCCCCCCCccccCCCCCCEEeecCCccC-CCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccc
Q 035693          263 NTSFSGKLPDSIGNLENLASVDVSSCNFT-RPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG  341 (348)
Q Consensus       263 ~n~~~~~~~~~l~~~~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g  341 (348)
                      .|+++ .+|.+++.+++|+.|.+.+|++. +-+|..++.+.+|+++..++|.+.= .|..+..+ ..|+.|.|+.|++- 
T Consensus       277 rNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl-VPEglcRC-~kL~kL~L~~NrLi-  352 (1255)
T KOG0444|consen  277 RNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL-VPEGLCRC-VKLQKLKLDHNRLI-  352 (1255)
T ss_pred             cchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc-Cchhhhhh-HHHHHhccccccee-
Confidence            66665 55666666666666666666555 2355556666666666666666532 55554433 56777777777664 


Q ss_pred             cCCCCC
Q 035693          342 GISSNI  347 (348)
Q Consensus       342 ~ip~~~  347 (348)
                      ++|++|
T Consensus       353 TLPeaI  358 (1255)
T KOG0444|consen  353 TLPEAI  358 (1255)
T ss_pred             echhhh
Confidence            566543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.79  E-value=2.3e-18  Score=165.27  Aligned_cols=247  Identities=22%  Similarity=0.255  Sum_probs=144.9

Q ss_pred             EEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCC
Q 035693           51 VIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLT  130 (348)
Q Consensus        51 l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~  130 (348)
                      -..|+++.+ .+. .+|.  .+.  ++|+.|++++|+++.  +|..+++|++|++++|.++.       +|..     .+
T Consensus       203 ~~~LdLs~~-~Lt-sLP~--~l~--~~L~~L~L~~N~Lt~--LP~lp~~Lk~LdLs~N~Lts-------LP~l-----p~  262 (788)
T PRK15387        203 NAVLNVGES-GLT-TLPD--CLP--AHITTLVIPDNNLTS--LPALPPELRTLEVSGNQLTS-------LPVL-----PP  262 (788)
T ss_pred             CcEEEcCCC-CCC-cCCc--chh--cCCCEEEccCCcCCC--CCCCCCCCcEEEecCCccCc-------ccCc-----cc
Confidence            356777777 665 4664  343  367777777777776  56667777777777776542       2221     23


Q ss_pred             CCcEEEccCcCCCCcchhhhhhh--------------CCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCC
Q 035693          131 ELRELYLDNVDLSGRRTEWCKAM--------------SFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSC  196 (348)
Q Consensus       131 ~L~~L~l~~~~~~~~~~~~~~~~--------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  196 (348)
                      +|+.|++++|.+...+. .+..+              ...++|++|++++|.+.. +|..   ..+|+.|++++|.. . 
T Consensus       263 sL~~L~Ls~N~L~~Lp~-lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L-~-  335 (788)
T PRK15387        263 GLLELSIFSNPLTHLPA-LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQL-T-  335 (788)
T ss_pred             ccceeeccCCchhhhhh-chhhcCEEECcCCccccccccccccceeECCCCcccc-CCCC---cccccccccccCcc-c-
Confidence            55555555555443221 00000              012345555555554443 2211   12344444444422 1 


Q ss_pred             ChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccC
Q 035693          197 QVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGN  276 (348)
Q Consensus       197 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~  276 (348)
                      .++.   ....|++|++++|.+. .+|..   .++|+.|++++|.+..  ++.+  ..+|+.|++++|.+. .+|..   
T Consensus       336 ~LP~---lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~--LP~l--~~~L~~LdLs~N~Lt-~LP~l---  400 (788)
T PRK15387        336 SLPT---LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS--LPAL--PSGLKELIVSGNRLT-SLPVL---  400 (788)
T ss_pred             cccc---cccccceEecCCCccC-CCCCC---Ccccceehhhcccccc--Cccc--ccccceEEecCCccc-CCCCc---
Confidence            1111   1125677777777766 34432   2456666777766542  2322  246888888888887 45543   


Q ss_pred             CCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCC
Q 035693          277 LENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISS  345 (348)
Q Consensus       277 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~  345 (348)
                      .++|+.|++++|.+.. +|..   ..+|..|++++|+++. +|..+.. +++|+.|+|++|+++|.+|.
T Consensus       401 ~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~-LP~sl~~-L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        401 PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTR-LPESLIH-LSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCcccc-cChHHhh-ccCCCeEECCCCCCCchHHH
Confidence            2578888888888876 5643   2467888999999874 7776554 47899999999999987664

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.78  E-value=7.8e-20  Score=162.88  Aligned_cols=281  Identities=22%  Similarity=0.203  Sum_probs=181.4

Q ss_pred             EeCCCCcccc-ccccCCcccccccccCEEeCCCCCCCCCCC---CC---CCCCCcEEecCCCCCCCCcceeecCCChhhh
Q 035693           54 LDLSAEPILI-GSLENASGLFSLQYLQSLNLGFTLFYGFPM---PS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFF  126 (348)
Q Consensus        54 L~ls~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  126 (348)
                      |+|..+ .+. +....  .+..++.|+.|+++++.+++.+.   +.   ..++|++++++++.+.........++  ..+
T Consensus         3 l~L~~~-~l~~~~~~~--~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~--~~l   77 (319)
T cd00116           3 LSLKGE-LLKTERATE--LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL--QGL   77 (319)
T ss_pred             cccccC-cccccchHH--HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHH--HHH
Confidence            455555 443 23332  45667778888888887755321   11   66778888888876531000001111  236


Q ss_pred             cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCc----chHHhhhc-cCCCEEEcccCCCCCC---Ch
Q 035693          127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDP----INHHLANL-LSLSVIRLRDNHAVSC---QV  198 (348)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~~---~~  198 (348)
                      ..+++|+.|++++|.+..........+...++|++|++++|.+.+.    +...+..+ ++|++|++++|.....   .+
T Consensus        78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            6788999999999888754443222222225699999999988742    33455666 8899999999854321   23


Q ss_pred             hhhhhcCCCCCEEEccCCcCCCc----ccccccCCCCccEEEccCCCCCCCCCC----CCCCCCCCcEEEcccCCCCCCC
Q 035693          199 PEFVANLLNLTTLDLSQCDLHGK----FPEKVLQVPTLETLDLSYNSLLQGSLP----HFPKNSSLRNLNLKNTSFSGKL  270 (348)
Q Consensus       199 ~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~L~~L~ls~n~~~~~~  270 (348)
                      ...+..+.+|++|++++|.+.+.    ++..+...++|+.|++++|.+......    .+..+++|++|++++|.+++..
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~  237 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG  237 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence            44566777899999999988742    333455567899999999877544332    3445788999999999887422


Q ss_pred             Ccccc-----CCCCCCEEeecCCccCC----CCcccccCCCCCCEEeCCCCccCCccCch----hhhhhcCCCeeecccC
Q 035693          271 PDSIG-----NLENLASVDVSSCNFTR----PIPTSMANLTQLFHLDFSSNHFSDPIPTL----RLYMSRNLNYLNLSSN  337 (348)
Q Consensus       271 ~~~l~-----~~~~L~~L~L~~n~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~----~~~~~~~L~~L~l~~n  337 (348)
                      ...+.     ..+.|++|++++|.+++    .++..+...++|+.+++++|.+.+.....    .....+.|+++++.+|
T Consensus       238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence            22221     23689999999999873    23445566689999999999998642222    2222257899999887


Q ss_pred             cc
Q 035693          338 DL  339 (348)
Q Consensus       338 ~l  339 (348)
                      ++
T Consensus       318 ~~  319 (319)
T cd00116         318 SF  319 (319)
T ss_pred             CC
Confidence            64

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.77  E-value=2.4e-17  Score=168.81  Aligned_cols=261  Identities=22%  Similarity=0.255  Sum_probs=152.6

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC--CCCCCcEEecCCCCCCCCcceeecCCChhhh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS--SLPRLVTLDLSSREPISGFSWRLEIPNFNFF  126 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  126 (348)
                      .+|++|+++++ .+. .++.  .+..+++|+.|+++++..... +|.  .+++|++|++++|..      -..+|..  +
T Consensus       611 ~~L~~L~L~~s-~l~-~L~~--~~~~l~~Lk~L~Ls~~~~l~~-ip~ls~l~~Le~L~L~~c~~------L~~lp~s--i  677 (1153)
T PLN03210        611 ENLVKLQMQGS-KLE-KLWD--GVHSLTGLRNIDLRGSKNLKE-IPDLSMATNLETLKLSDCSS------LVELPSS--I  677 (1153)
T ss_pred             cCCcEEECcCc-ccc-cccc--ccccCCCCCEEECCCCCCcCc-CCccccCCcccEEEecCCCC------ccccchh--h
Confidence            45566666665 443 3333  455666666666665432221 333  566666666666542      1233433  5


Q ss_pred             cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhh------
Q 035693          127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPE------  200 (348)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------  200 (348)
                      .++++|+.|++++|......+   .. .++++|++|++++|.....+|..   ..+|++|++.++.+..  ++.      
T Consensus       678 ~~L~~L~~L~L~~c~~L~~Lp---~~-i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~--lP~~~~l~~  748 (1153)
T PLN03210        678 QYLNKLEDLDMSRCENLEILP---TG-INLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE--FPSNLRLEN  748 (1153)
T ss_pred             hccCCCCEEeCCCCCCcCccC---Cc-CCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc--ccccccccc
Confidence            666666666666654222222   11 14555666666655433323321   2344555555442111  111      


Q ss_pred             ------------------------hhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCC
Q 035693          201 ------------------------FVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSL  256 (348)
Q Consensus       201 ------------------------~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L  256 (348)
                                              .....++|+.|++++|.....+|..+..+++|+.|++++|.... .++....+++|
T Consensus       749 L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~-~LP~~~~L~sL  827 (1153)
T PLN03210        749 LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE-TLPTGINLESL  827 (1153)
T ss_pred             cccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC-eeCCCCCcccc
Confidence                                    11123467788888877666778888888888888888875322 23333357788


Q ss_pred             cEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeeccc
Q 035693          257 RNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSS  336 (348)
Q Consensus       257 ~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~  336 (348)
                      ++|++++|.....+|..   ..+|+.|++++|.+.. +|..+..+++|+.|++++|.-...++..... +++|+.+++++
T Consensus       828 ~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~-L~~L~~L~l~~  902 (1153)
T PLN03210        828 ESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISK-LKHLETVDFSD  902 (1153)
T ss_pred             CEEECCCCCcccccccc---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCccccc-ccCCCeeecCC
Confidence            88888887654455543   3578888888888876 7777888888999999886644446654433 36788888887


Q ss_pred             C
Q 035693          337 N  337 (348)
Q Consensus       337 n  337 (348)
                      |
T Consensus       903 C  903 (1153)
T PLN03210        903 C  903 (1153)
T ss_pred             C
Confidence            7

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.76  E-value=2.4e-17  Score=168.80  Aligned_cols=216  Identities=25%  Similarity=0.309  Sum_probs=97.8

Q ss_pred             ccCEEeCCCCCCCCCCCCC--CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhC
Q 035693           77 YLQSLNLGFTLFYGFPMPS--SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS  154 (348)
Q Consensus        77 ~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  154 (348)
                      +|+.|.+.++.+..  +|.  .+.+|++|++.++.+.       .++..  +..+++|+.++++++......+    .+.
T Consensus       590 ~Lr~L~~~~~~l~~--lP~~f~~~~L~~L~L~~s~l~-------~L~~~--~~~l~~Lk~L~Ls~~~~l~~ip----~ls  654 (1153)
T PLN03210        590 KLRLLRWDKYPLRC--MPSNFRPENLVKLQMQGSKLE-------KLWDG--VHSLTGLRNIDLRGSKNLKEIP----DLS  654 (1153)
T ss_pred             ccEEEEecCCCCCC--CCCcCCccCCcEEECcCcccc-------ccccc--cccCCCCCEEECCCCCCcCcCC----ccc
Confidence            45555555554444  232  4455555555555432       11221  3445555555555443222111    234


Q ss_pred             CCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccE
Q 035693          155 FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLET  234 (348)
Q Consensus       155 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  234 (348)
                      .+++|++|++++|.....+|..+..+++|+.|++++|.... .++..+ ++++|+.|++++|.....+|..   .++|+.
T Consensus       655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~-~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~  729 (1153)
T PLN03210        655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE-ILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISW  729 (1153)
T ss_pred             cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC-ccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCe
Confidence            45555555555554433455555555555555555543222 122222 3444555555444332222211   123333


Q ss_pred             EEccCCCCCCCCC------------------------C-----CCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEee
Q 035693          235 LDLSYNSLLQGSL------------------------P-----HFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDV  285 (348)
Q Consensus       235 L~l~~~~l~~~~~------------------------~-----~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L  285 (348)
                      |++.++.+.....                        .     .+...++|++|++++|.....+|..++.+++|+.|++
T Consensus       730 L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~L  809 (1153)
T PLN03210        730 LDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI  809 (1153)
T ss_pred             eecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEEC
Confidence            3333333211000                        0     0011245666666666555456666666666666666


Q ss_pred             cCCccCCCCcccccCCCCCCEEeCCCCc
Q 035693          286 SSCNFTRPIPTSMANLTQLFHLDFSSNH  313 (348)
Q Consensus       286 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~  313 (348)
                      ++|.....+|... .+++|+.|++++|.
T Consensus       810 s~C~~L~~LP~~~-~L~sL~~L~Ls~c~  836 (1153)
T PLN03210        810 ENCINLETLPTGI-NLESLESLDLSGCS  836 (1153)
T ss_pred             CCCCCcCeeCCCC-CccccCEEECCCCC
Confidence            6664444344433 34455555555543

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=5.7e-17  Score=156.47  Aligned_cols=227  Identities=21%  Similarity=0.328  Sum_probs=131.7

Q ss_pred             cccCEEeCCCCCCCCCCCCC-CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhC
Q 035693           76 QYLQSLNLGFTLFYGFPMPS-SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS  154 (348)
Q Consensus        76 ~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  154 (348)
                      .+.+.|+++++.++.  +|. -.++|+.|++++|.++       .+|..  +  .++|+.|++++|.+...+.    .+ 
T Consensus       178 ~~~~~L~L~~~~Lts--LP~~Ip~~L~~L~Ls~N~Lt-------sLP~~--l--~~nL~~L~Ls~N~LtsLP~----~l-  239 (754)
T PRK15370        178 NNKTELRLKILGLTT--IPACIPEQITTLILDNNELK-------SLPEN--L--QGNIKTLYANSNQLTSIPA----TL-  239 (754)
T ss_pred             cCceEEEeCCCCcCc--CCcccccCCcEEEecCCCCC-------cCChh--h--ccCCCEEECCCCccccCCh----hh-
Confidence            346777887777776  454 3457888888888764       23332  2  2477888888887765432    11 


Q ss_pred             CCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccE
Q 035693          155 FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLET  234 (348)
Q Consensus       155 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  234 (348)
                       ..+|+.|++++|.+.. +|..+.  .+|+.|++++|.. . .++..+.  ++|+.|++++|.+. .+|..+.  +.|+.
T Consensus       240 -~~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L-~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~  308 (754)
T PRK15370        240 -PDTIQEMELSINRITE-LPERLP--SALQSLDLFHNKI-S-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITH  308 (754)
T ss_pred             -hccccEEECcCCccCc-CChhHh--CCCCEEECcCCcc-C-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHH
Confidence             2367778888777764 454443  4677788777743 2 2343332  36777777777776 3444332  35666


Q ss_pred             EEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCcc
Q 035693          235 LDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHF  314 (348)
Q Consensus       235 L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l  314 (348)
                      |++++|.+.... ..+  .++|++|++++|.++ .+|..+.  ++|+.|++++|++.. +|..+  .++|+.|++++|++
T Consensus       309 L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~L  379 (754)
T PRK15370        309 LNVQSNSLTALP-ETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITV-LPETL--PPTITTLDVSRNAL  379 (754)
T ss_pred             HHhcCCccccCC-ccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcC
Confidence            677766653211 111  245666666666665 3454432  466666666666654 44433  24666666666666


Q ss_pred             CCccCchhhhhhcCCCeeecccCcccccCCC
Q 035693          315 SDPIPTLRLYMSRNLNYLNLSSNDLTGGISS  345 (348)
Q Consensus       315 ~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~  345 (348)
                      .. +|..+.   ..|+.|++++|+++ .+|+
T Consensus       380 t~-LP~~l~---~sL~~LdLs~N~L~-~LP~  405 (754)
T PRK15370        380 TN-LPENLP---AALQIMQASRNNLV-RLPE  405 (754)
T ss_pred             CC-CCHhHH---HHHHHHhhccCCcc-cCch
Confidence            54 444322   24566666666665 4443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.73  E-value=5.7e-20  Score=172.49  Aligned_cols=244  Identities=26%  Similarity=0.311  Sum_probs=158.0

Q ss_pred             ccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhh
Q 035693           75 LQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCK  151 (348)
Q Consensus        75 ~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  151 (348)
                      ..+|++++++++.++.  +|+   .|.+|+.|+..+|.++       .+|..  +.....|+.+.+.+|++...++    
T Consensus       240 p~nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l~-------~lp~r--i~~~~~L~~l~~~~nel~yip~----  304 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLSN--LPEWIGACANLEALNANHNRLV-------ALPLR--ISRITSLVSLSAAYNELEYIPP----  304 (1081)
T ss_pred             cccceeeecchhhhhc--chHHHHhcccceEecccchhHH-------hhHHH--HhhhhhHHHHHhhhhhhhhCCC----
Confidence            3455555555555554  233   4555555555555432       22222  3444455555555555544332    


Q ss_pred             hhCCCCCCcEEEccCccCCCcchHHhhhcc-CCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCC
Q 035693          152 AMSFLPNLQVLNLSNCLLSDPINHHLANLL-SLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVP  230 (348)
Q Consensus       152 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~  230 (348)
                      .......|++|++..|.+....+..+.... .|+.|..+.++..+.. ...=..++.|+.|++.+|.+++...+.+..+.
T Consensus       305 ~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp-~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~  383 (1081)
T KOG0618|consen  305 FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP-SYEENNHAALQELYLANNHLTDSCFPVLVNFK  383 (1081)
T ss_pred             cccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc-cccchhhHHHHHHHHhcCcccccchhhhcccc
Confidence            234456666666666666653222222222 2445555544222111 00001334688899999999877777788899


Q ss_pred             CccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCC
Q 035693          231 TLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFS  310 (348)
Q Consensus       231 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~  310 (348)
                      +|+.|++++|++.......+.++..|+.|++|||+++ .+|+.+..+..|++|...+|.+.. +| .+..++.|+.+|++
T Consensus       384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS  460 (1081)
T KOG0618|consen  384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLS  460 (1081)
T ss_pred             ceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecc
Confidence            9999999999886666667777889999999999998 788888889999999999999987 77 56789999999999


Q ss_pred             CCccCCccCchhhhhhcCCCeeecccCc
Q 035693          311 SNHFSDPIPTLRLYMSRNLNYLNLSSND  338 (348)
Q Consensus       311 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~  338 (348)
                      .|.+....-...... ++|++||+++|.
T Consensus       461 ~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  461 CNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             cchhhhhhhhhhCCC-cccceeeccCCc
Confidence            999875322222222 789999999985

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.73  E-value=8.7e-21  Score=162.84  Aligned_cols=238  Identities=26%  Similarity=0.353  Sum_probs=147.7

Q ss_pred             EEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhhc
Q 035693           51 VIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQ  127 (348)
Q Consensus        51 l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  127 (348)
                      ++.++++++ .+. .+|.  +++.+..++.++.++|+++.  +|.   ..+.|+++++++|.+.       .+++.  +.
T Consensus        70 l~vl~~~~n-~l~-~lp~--aig~l~~l~~l~vs~n~ls~--lp~~i~s~~~l~~l~~s~n~~~-------el~~~--i~  134 (565)
T KOG0472|consen   70 LTVLNVHDN-KLS-QLPA--AIGELEALKSLNVSHNKLSE--LPEQIGSLISLVKLDCSSNELK-------ELPDS--IG  134 (565)
T ss_pred             eeEEEeccc-hhh-hCCH--HHHHHHHHHHhhcccchHhh--ccHHHhhhhhhhhhhcccccee-------ecCch--HH
Confidence            556666666 443 3343  56666666666666666655  343   5666666666666642       44444  56


Q ss_pred             CCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCC
Q 035693          128 NLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLN  207 (348)
Q Consensus       128 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~  207 (348)
                      .+..|+.++..+|++...++    .+.++..|..+++.+|.+....+..+. +..|++|+...| .. ..+|+.++.+.+
T Consensus       135 ~~~~l~dl~~~~N~i~slp~----~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N-~L-~tlP~~lg~l~~  207 (565)
T KOG0472|consen  135 RLLDLEDLDATNNQISSLPE----DMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSN-LL-ETLPPELGGLES  207 (565)
T ss_pred             HHhhhhhhhccccccccCch----HHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchh-hh-hcCChhhcchhh
Confidence            66666666666666665443    455566666666666666653333333 666667766665 22 246666666767


Q ss_pred             CCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecC
Q 035693          208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSS  287 (348)
Q Consensus       208 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~  287 (348)
                      |+-|++..|.+. .+| .|+.++.|.++++..|.+..........++++..||+.+|+++ +.|+.+.-+.+|++|++++
T Consensus       208 L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSN  284 (565)
T KOG0472|consen  208 LELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSN  284 (565)
T ss_pred             hHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccC
Confidence            777777777665 455 4666667777777766654444444445666777777777776 6666666666777777777


Q ss_pred             CccCCCCcccccCCCCCCEEeCCCCccC
Q 035693          288 CNFTRPIPTSMANLTQLFHLDFSSNHFS  315 (348)
Q Consensus       288 n~l~~~~~~~l~~~~~L~~L~l~~n~l~  315 (348)
                      |.+++ .|..++++ .|+.|-+.||++.
T Consensus       285 N~is~-Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  285 NDISS-LPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             Ccccc-CCcccccc-eeeehhhcCCchH
Confidence            77766 66666666 6777777777664

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=2e-18  Score=153.75  Aligned_cols=258  Identities=21%  Similarity=0.217  Sum_probs=181.6

Q ss_pred             EEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCC---cchhhhhhh
Q 035693           80 SLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSG---RRTEWCKAM  153 (348)
Q Consensus        80 ~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~~~~~~  153 (348)
                      .|+|..+.+++.....   .+.+|++|+++++.++...  ...++  ..+...+.++.++++++.+..   ....+...+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~--~~~i~--~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l   77 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEA--AKALA--SALRPQPSLKELCLSLNETGRIPRGLQSLLQGL   77 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHH--HHHHH--HHHhhCCCceEEeccccccCCcchHHHHHHHHH
Confidence            4677777777553444   6777999999999864311  01122  236777889999999988763   112233566


Q ss_pred             CCCCCCcEEEccCccCCCcchHHhhhccC---CCEEEcccCCCCCCC---hhhhhhcC-CCCCEEEccCCcCCC----cc
Q 035693          154 SFLPNLQVLNLSNCLLSDPINHHLANLLS---LSVIRLRDNHAVSCQ---VPEFVANL-LNLTTLDLSQCDLHG----KF  222 (348)
Q Consensus       154 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---L~~L~l~~~~~~~~~---~~~~l~~l-~~L~~L~l~~~~~~~----~~  222 (348)
                      ..+++|++|++++|.+....+..+..+.+   |++|++++|+.....   +...+..+ ++|++|++++|.+++    .+
T Consensus        78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            77899999999999998666666666655   999999999543221   23345666 899999999999874    23


Q ss_pred             cccccCCCCccEEEccCCCCCCCCCCC----CCCCCCCcEEEcccCCCCCC----CCccccCCCCCCEEeecCCccCCCC
Q 035693          223 PEKVLQVPTLETLDLSYNSLLQGSLPH----FPKNSSLRNLNLKNTSFSGK----LPDSIGNLENLASVDVSSCNFTRPI  294 (348)
Q Consensus       223 ~~~l~~~~~L~~L~l~~~~l~~~~~~~----~~~~~~L~~L~ls~n~~~~~----~~~~l~~~~~L~~L~L~~n~l~~~~  294 (348)
                      +..+..+++|++|++++|.+.....+.    +...++|+.|++++|.+.+.    +...+..+++|++|++++|.+.+..
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~  237 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG  237 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence            445666789999999999876544333    33457999999999988643    2334566789999999999998622


Q ss_pred             ccccc-----CCCCCCEEeCCCCccCCccCchhh---hhhcCCCeeecccCcccc
Q 035693          295 PTSMA-----NLTQLFHLDFSSNHFSDPIPTLRL---YMSRNLNYLNLSSNDLTG  341 (348)
Q Consensus       295 ~~~l~-----~~~~L~~L~l~~n~l~~~~~~~~~---~~~~~L~~L~l~~n~l~g  341 (348)
                      ...+.     ..+.|+.|++++|.+++.....+.   ...++|+++++++|.++.
T Consensus       238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            22221     247999999999999753322222   222689999999999974

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.72  E-value=5.9e-17  Score=156.40  Aligned_cols=251  Identities=20%  Similarity=0.286  Sum_probs=181.1

Q ss_pred             EeCCCCCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC-CCCCCcEEecCCCCCCCCcceeecCCC
Q 035693           44 DCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS-SLPRLVTLDLSSREPISGFSWRLEIPN  122 (348)
Q Consensus        44 ~c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~  122 (348)
                      .|.. .+.+.|+++++ .+. .+|.  .+  .++|+.|++++|.++.  +|. ..++|++|++++|.++       .+|.
T Consensus       174 ~Cl~-~~~~~L~L~~~-~Lt-sLP~--~I--p~~L~~L~Ls~N~Lts--LP~~l~~nL~~L~Ls~N~Lt-------sLP~  237 (754)
T PRK15370        174 DCLK-NNKTELRLKIL-GLT-TIPA--CI--PEQITTLILDNNELKS--LPENLQGNIKTLYANSNQLT-------SIPA  237 (754)
T ss_pred             hhcc-cCceEEEeCCC-CcC-cCCc--cc--ccCCcEEEecCCCCCc--CChhhccCCCEEECCCCccc-------cCCh
Confidence            4543 56789999988 665 4554  33  3579999999999987  455 5579999999999864       2343


Q ss_pred             hhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhh
Q 035693          123 FNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFV  202 (348)
Q Consensus       123 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l  202 (348)
                      .  +  .+.|+.|++++|.+...+..    +  ..+|++|++++|.+.. +|..+.  ++|+.|++++|.. +. ++..+
T Consensus       238 ~--l--~~~L~~L~Ls~N~L~~LP~~----l--~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~L-t~-LP~~l  302 (754)
T PRK15370        238 T--L--PDTIQEMELSINRITELPER----L--PSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSI-RT-LPAHL  302 (754)
T ss_pred             h--h--hccccEEECcCCccCcCChh----H--hCCCCEEECcCCccCc-cccccC--CCCcEEECCCCcc-cc-Ccccc
Confidence            2  2  24799999999998865432    2  2479999999999886 565443  5899999999844 32 33322


Q ss_pred             hcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCE
Q 035693          203 ANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLAS  282 (348)
Q Consensus       203 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~  282 (348)
                      .  +.|+.|++++|.+. .+|..+  .++|+.|++++|.+... +..+  .++|+.|++++|++. .+|..+.  ++|+.
T Consensus       303 p--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~  371 (754)
T PRK15370        303 P--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQIT-VLPETLP--PTITT  371 (754)
T ss_pred             h--hhHHHHHhcCCccc-cCCccc--cccceeccccCCccccC-Chhh--cCcccEEECCCCCCC-cCChhhc--CCcCE
Confidence            2  36888999999887 455543  36899999999986532 2222  368999999999988 5676553  68999


Q ss_pred             EeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhh---hhcCCCeeecccCccc
Q 035693          283 VDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLY---MSRNLNYLNLSSNDLT  340 (348)
Q Consensus       283 L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~~L~~L~l~~n~l~  340 (348)
                      |++++|.+.. +|..+.  ..|+.|++++|++.. +|..+..   ..+.+..|++.+|+++
T Consensus       372 LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        372 LDVSRNALTN-LPENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             EECCCCcCCC-CCHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence            9999999987 565443  368999999999874 6654322   2367889999999875

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.70  E-value=6.1e-20  Score=157.72  Aligned_cols=260  Identities=27%  Similarity=0.346  Sum_probs=219.6

Q ss_pred             EEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhhc
Q 035693           51 VIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQ  127 (348)
Q Consensus        51 l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  127 (348)
                      +..+.++.| .+....+   .+.++..|.++++.+|.+...  |.   .+..++.+++++|++.       .+|..  +.
T Consensus        47 l~~lils~N-~l~~l~~---dl~nL~~l~vl~~~~n~l~~l--p~aig~l~~l~~l~vs~n~ls-------~lp~~--i~  111 (565)
T KOG0472|consen   47 LQKLILSHN-DLEVLRE---DLKNLACLTVLNVHDNKLSQL--PAAIGELEALKSLNVSHNKLS-------ELPEQ--IG  111 (565)
T ss_pred             hhhhhhccC-chhhccH---hhhcccceeEEEeccchhhhC--CHHHHHHHHHHHhhcccchHh-------hccHH--Hh
Confidence            678889998 6653433   788999999999999998874  44   7888999999999853       66666  78


Q ss_pred             CCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCC
Q 035693          128 NLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLN  207 (348)
Q Consensus       128 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~  207 (348)
                      ....|+.+++++|.+....    ..++.+..|+.++-.+|.++. .|..+..+.++..+++.+|+...  .+...-++..
T Consensus       112 s~~~l~~l~~s~n~~~el~----~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~--l~~~~i~m~~  184 (565)
T KOG0472|consen  112 SLISLVKLDCSSNELKELP----DSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKA--LPENHIAMKR  184 (565)
T ss_pred             hhhhhhhhhccccceeecC----chHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhh--CCHHHHHHHH
Confidence            8899999999999987665    467888899999999999987 78888999999999999985433  4444445889


Q ss_pred             CCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCcccc-CCCCCCEEeec
Q 035693          208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIG-NLENLASVDVS  286 (348)
Q Consensus       208 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~-~~~~L~~L~L~  286 (348)
                      |++++...|.+. .+|+.++.+.+|..|++..|.+  ...|.|.++..|+++.++.|++. .+|.... .++++..|+++
T Consensus       185 L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki--~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLR  260 (565)
T KOG0472|consen  185 LKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKI--RFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLR  260 (565)
T ss_pred             HHhcccchhhhh-cCChhhcchhhhHHHHhhhccc--ccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecc
Confidence            999999999887 8999999999999999999976  45679999999999999999998 6777655 88999999999


Q ss_pred             CCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccc
Q 035693          287 SCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT  340 (348)
Q Consensus       287 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  340 (348)
                      .|++.+ +|..+..+.+|.+||+++|.|++ +|......  .|+.|-+.+|++.
T Consensus       261 dNklke-~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl--hL~~L~leGNPlr  310 (565)
T KOG0472|consen  261 DNKLKE-VPDEICLLRSLERLDLSNNDISS-LPYSLGNL--HLKFLALEGNPLR  310 (565)
T ss_pred             cccccc-CchHHHHhhhhhhhcccCCcccc-CCcccccc--eeeehhhcCCchH
Confidence            999998 88888889999999999999987 77665543  7889999999873

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.68  E-value=5.5e-16  Score=149.04  Aligned_cols=236  Identities=22%  Similarity=0.225  Sum_probs=166.1

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcce-----eecCCC-
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSW-----RLEIPN-  122 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~-  122 (348)
                      .+++.|++++| .+. .+|.     .+++|++|++++|.++.  +|...++|++|++++|.+......     .+.+.. 
T Consensus       222 ~~L~~L~L~~N-~Lt-~LP~-----lp~~Lk~LdLs~N~Lts--LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N  292 (788)
T PRK15387        222 AHITTLVIPDN-NLT-SLPA-----LPPELRTLEVSGNQLTS--LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGN  292 (788)
T ss_pred             cCCCEEEccCC-cCC-CCCC-----CCCCCcEEEecCCccCc--ccCcccccceeeccCCchhhhhhchhhcCEEECcCC
Confidence            46788888888 665 3553     25788888888888886  555566777777777765421000     000000 


Q ss_pred             -hhh-hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhh
Q 035693          123 -FNF-FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPE  200 (348)
Q Consensus       123 -~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  200 (348)
                       ... -...++|+.|++++|++...+.       ....|+.|++++|.++. +|.   ...+|+.|++++|++..  ++.
T Consensus       293 ~Lt~LP~~p~~L~~LdLS~N~L~~Lp~-------lp~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS~N~Ls~--LP~  359 (788)
T PRK15387        293 QLTSLPVLPPGLQELSVSDNQLASLPA-------LPSELCKLWAYNNQLTS-LPT---LPSGLQELSVSDNQLAS--LPT  359 (788)
T ss_pred             ccccccccccccceeECCCCccccCCC-------CcccccccccccCcccc-ccc---cccccceEecCCCccCC--CCC
Confidence             000 1123689999999998876432       12468899999999886 453   22589999999995432  333


Q ss_pred             hhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCC
Q 035693          201 FVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENL  280 (348)
Q Consensus       201 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L  280 (348)
                      .   ..+|+.|++++|.+. .+|..   ..+|+.|++++|.+..  ++..  .++|+.|++++|.+. .+|..   ..+|
T Consensus       360 l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~--LP~l--~s~L~~LdLS~N~Ls-sIP~l---~~~L  424 (788)
T PRK15387        360 L---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS--LPVL--PSELKELMVSGNRLT-SLPML---PSGL  424 (788)
T ss_pred             C---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC--CCCc--ccCCCEEEccCCcCC-CCCcc---hhhh
Confidence            2   347888999999987 46643   3579999999998753  3322  358999999999998 56653   3478


Q ss_pred             CEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchh
Q 035693          281 ASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLR  322 (348)
Q Consensus       281 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~  322 (348)
                      +.|++++|+++. +|..+..+++|..|++++|++.+..+..+
T Consensus       425 ~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        425 LSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            899999999987 88888999999999999999998666543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.66  E-value=4.1e-18  Score=160.20  Aligned_cols=266  Identities=25%  Similarity=0.307  Sum_probs=176.5

Q ss_pred             EEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCC
Q 035693           51 VIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLT  130 (348)
Q Consensus        51 l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~  130 (348)
                      ++.+++..+ .+.+.++.  ++.++++  .|++++|.+... ....+++|+.|....|.++.     +       --.-+
T Consensus       158 ik~~~l~~n-~l~~~~~~--~i~~l~~--~ldLr~N~~~~~-dls~~~~l~~l~c~rn~ls~-----l-------~~~g~  219 (1081)
T KOG0618|consen  158 IKKLDLRLN-VLGGSFLI--DIYNLTH--QLDLRYNEMEVL-DLSNLANLEVLHCERNQLSE-----L-------EISGP  219 (1081)
T ss_pred             chhhhhhhh-hcccchhc--chhhhhe--eeecccchhhhh-hhhhccchhhhhhhhcccce-----E-------EecCc
Confidence            566666666 55556655  5666666  678888877732 45577777777777776532     1       12345


Q ss_pred             CCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCE
Q 035693          131 ELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTT  210 (348)
Q Consensus       131 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  210 (348)
                      .|+.|+...|.++....     -....+|++++++.+.++. +|..+..+.+|+.+....|+.  ..++..+....+|+.
T Consensus       220 ~l~~L~a~~n~l~~~~~-----~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l--~~lp~ri~~~~~L~~  291 (1081)
T KOG0618|consen  220 SLTALYADHNPLTTLDV-----HPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRL--VALPLRISRITSLVS  291 (1081)
T ss_pred             chheeeeccCcceeecc-----ccccccceeeecchhhhhc-chHHHHhcccceEecccchhH--HhhHHHHhhhhhHHH
Confidence            77777777777764332     2234578888888888887 668888888888888888844  346667777778888


Q ss_pred             EEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCC-CCCCcEEEcccCCCCCCCCc-cccCCCCCCEEeecCC
Q 035693          211 LDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPK-NSSLRNLNLKNTSFSGKLPD-SIGNLENLASVDVSSC  288 (348)
Q Consensus       211 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~ls~n~~~~~~~~-~l~~~~~L~~L~L~~n  288 (348)
                      |.+..|.+. .+|+...+.+.|++|++..|.+.....-.+.. ..+++.|+.+.+.+. ..|. .-...+.|+.|.+.+|
T Consensus       292 l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN  369 (1081)
T KOG0618|consen  292 LSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANN  369 (1081)
T ss_pred             HHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcC
Confidence            888888876 66666777888888888888764332212222 223555666666554 2332 1123456777777777


Q ss_pred             ccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCC
Q 035693          289 NFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSN  346 (348)
Q Consensus       289 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~  346 (348)
                      .+++.....+.++++|++|+|++|++.. +|.........|++|+|++|.++ .||+.
T Consensus       370 ~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-fpas~~~kle~LeeL~LSGNkL~-~Lp~t  425 (1081)
T KOG0618|consen  370 HLTDSCFPVLVNFKHLKVLHLSYNRLNS-FPASKLRKLEELEELNLSGNKLT-TLPDT  425 (1081)
T ss_pred             cccccchhhhccccceeeeeeccccccc-CCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence            7777666667777778888888877754 67666666677777778887776 66653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.63  E-value=5e-18  Score=145.70  Aligned_cols=129  Identities=20%  Similarity=0.268  Sum_probs=80.4

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCC-CCCCCCcceeecCCChh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSS-REPISGFSWRLEIPNFN  124 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~  124 (348)
                      ...++|+|..| .+. .+|. ..|+.+++|+.|||++|+|+.+ .|.   +++.|.+|-+.+ |+++        ....+
T Consensus        67 ~~tveirLdqN-~I~-~iP~-~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~--------~l~k~  134 (498)
T KOG4237|consen   67 PETVEIRLDQN-QIS-SIPP-GAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKIT--------DLPKG  134 (498)
T ss_pred             CcceEEEeccC-Ccc-cCCh-hhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchh--------hhhhh
Confidence            46677777777 554 5554 4677788888888888877775 333   666666666666 4432        11224


Q ss_pred             hhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCC
Q 035693          125 FFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNH  192 (348)
Q Consensus       125 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  192 (348)
                      .|.++..|+.|.+.-|++.-...   ..+..+++|..|.+..|.+..+-...+..+..++.+++..|+
T Consensus       135 ~F~gL~slqrLllNan~i~Cir~---~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  135 AFGGLSSLQRLLLNANHINCIRQ---DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             HhhhHHHHHHHhcChhhhcchhH---HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            46666677777776666655443   456666677777777776655333355666666666666654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.59  E-value=1.9e-17  Score=142.18  Aligned_cols=248  Identities=23%  Similarity=0.241  Sum_probs=172.8

Q ss_pred             ccCEEeCCCCCCCCCCCCC----CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccC-cCCCCcchhhhh
Q 035693           77 YLQSLNLGFTLFYGFPMPS----SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDN-VDLSGRRTEWCK  151 (348)
Q Consensus        77 ~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~  151 (348)
                      .-..|+|..|.|+.  +|.    .+++|++|+|++|.++      ..-|  +.|++++.|..|.+.+ |+|++...   .
T Consensus        68 ~tveirLdqN~I~~--iP~~aF~~l~~LRrLdLS~N~Is------~I~p--~AF~GL~~l~~Lvlyg~NkI~~l~k---~  134 (498)
T KOG4237|consen   68 ETVEIRLDQNQISS--IPPGAFKTLHRLRRLDLSKNNIS------FIAP--DAFKGLASLLSLVLYGNNKITDLPK---G  134 (498)
T ss_pred             cceEEEeccCCccc--CChhhccchhhhceecccccchh------hcCh--HhhhhhHhhhHHHhhcCCchhhhhh---h
Confidence            56778999999988  555    8999999999999873      2333  3488888887777755 88888776   6


Q ss_pred             hhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCC-----------
Q 035693          152 AMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHG-----------  220 (348)
Q Consensus       152 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----------  220 (348)
                      .|.++..|+.|.+.-|.+.-+...++..++++..|.+.+|. +.......+..+..++.+.+..|.+..           
T Consensus       135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~  213 (498)
T KOG4237|consen  135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL  213 (498)
T ss_pred             HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence            78888999999998888888778889999999999999983 332233356667777777776665210           


Q ss_pred             -cccccccCCCCccEEEccCCCC-------------------------CC-CCCCCCCCCCCCcEEEcccCCCCCCCCcc
Q 035693          221 -KFPEKVLQVPTLETLDLSYNSL-------------------------LQ-GSLPHFPKNSSLRNLNLKNTSFSGKLPDS  273 (348)
Q Consensus       221 -~~~~~l~~~~~L~~L~l~~~~l-------------------------~~-~~~~~~~~~~~L~~L~ls~n~~~~~~~~~  273 (348)
                       ..|..++.....+...+.+.++                         .. .....|..+++|++|++++|+++..-+.+
T Consensus       214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a  293 (498)
T KOG4237|consen  214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA  293 (498)
T ss_pred             hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence             1111222221111111111111                         11 11123455788888999999888777778


Q ss_pred             ccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcc
Q 035693          274 IGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDL  339 (348)
Q Consensus       274 l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l  339 (348)
                      |.....+++|.|..|++...-...+.++.+|+.|+|.+|+|+...|.. ++...+|.+|+|-.|++
T Consensus       294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a-F~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA-FQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc-ccccceeeeeehccCcc
Confidence            888888888888888888766667778888889999999988744444 44447788888877765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.50  E-value=2.5e-16  Score=120.73  Aligned_cols=181  Identities=25%  Similarity=0.393  Sum_probs=132.1

Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL  205 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l  205 (348)
                      +.++.++..|.+++|.++.+++    .+..+.+|++|++.+|.+.. +|..++.+++|+.|+++-|+..  ..|..|+.+
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vpp----nia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~--~lprgfgs~  101 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPP----NIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN--ILPRGFGSF  101 (264)
T ss_pred             ccchhhhhhhhcccCceeecCC----cHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh--cCccccCCC
Confidence            4566777888888888877665    46677888888888888776 7778888888888888876432  467788888


Q ss_pred             CCCCEEEccCCcCC-CcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEe
Q 035693          206 LNLTTLDLSQCDLH-GKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVD  284 (348)
Q Consensus       206 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~  284 (348)
                      |.|++|++..|.+. ..+|..|..++.|+.|.+++|.+ ...++.++.+.+|+.|.+.+|.+. .+|..++.++.|++|.
T Consensus       102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelh  179 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELH  179 (264)
T ss_pred             chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHh
Confidence            88888888888775 36677777778888888888875 345667777888888888888877 6788888888888888


Q ss_pred             ecCCccCCCCcccccCCC---CCCEEeCCCCccCC
Q 035693          285 VSSCNFTRPIPTSMANLT---QLFHLDFSSNHFSD  316 (348)
Q Consensus       285 L~~n~l~~~~~~~l~~~~---~L~~L~l~~n~l~~  316 (348)
                      +.+|+++- +|..++++.   +=.++.+..|+.-.
T Consensus       180 iqgnrl~v-lppel~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  180 IQGNRLTV-LPPELANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             cccceeee-cChhhhhhhhhhhHHHHhhhhCCCCC
Confidence            88888876 444444322   22344455555443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.50  E-value=2e-16  Score=121.23  Aligned_cols=163  Identities=24%  Similarity=0.348  Sum_probs=85.3

Q ss_pred             CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchH
Q 035693           96 SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINH  175 (348)
Q Consensus        96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  175 (348)
                      .+.+...|.+++|+++       .+|..  +..+.+|+.|++.+|++.+.+.    ++..+++|+.|+++-|.+.. .|.
T Consensus        31 ~~s~ITrLtLSHNKl~-------~vppn--ia~l~nlevln~~nnqie~lp~----~issl~klr~lnvgmnrl~~-lpr   96 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-------VVPPN--IAELKNLEVLNLSNNQIEELPT----SISSLPKLRILNVGMNRLNI-LPR   96 (264)
T ss_pred             chhhhhhhhcccCcee-------ecCCc--HHHhhhhhhhhcccchhhhcCh----hhhhchhhhheecchhhhhc-Ccc
Confidence            4455555555555542       33333  4555555666666655554432    44555556666655555443 555


Q ss_pred             HhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCC
Q 035693          176 HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSS  255 (348)
Q Consensus       176 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  255 (348)
                      .|+.++.|+.|++..|......+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+. ..+..++.+..
T Consensus        97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~  174 (264)
T KOG0617|consen   97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR  174 (264)
T ss_pred             ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence            55555566666655554444444544545555555555555554 45555555555666555555431 22233344555


Q ss_pred             CcEEEcccCCCCCCCCcccc
Q 035693          256 LRNLNLKNTSFSGKLPDSIG  275 (348)
Q Consensus       256 L~~L~ls~n~~~~~~~~~l~  275 (348)
                      |++|.+.+|+++ .+|..++
T Consensus       175 lrelhiqgnrl~-vlppel~  193 (264)
T KOG0617|consen  175 LRELHIQGNRLT-VLPPELA  193 (264)
T ss_pred             HHHHhcccceee-ecChhhh
Confidence            555556665555 4444333

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.49  E-value=7.3e-15  Score=124.63  Aligned_cols=233  Identities=22%  Similarity=0.280  Sum_probs=159.4

Q ss_pred             CCEEEEeCCCCccccc----cccCCcccccccccCEEeCCCCCCCCC---CCCC----------CCCCCcEEecCCCCCC
Q 035693           49 GHVIGLDLSAEPILIG----SLENASGLFSLQYLQSLNLGFTLFYGF---PMPS----------SLPRLVTLDLSSREPI  111 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~----------~~~~L~~L~l~~~~~~  111 (348)
                      ..+++|+||+| .+..    .+-.  .+++.+.|+..+++.- +++.   .+|+          .+|+|++|+||+|.|.
T Consensus        30 ~s~~~l~lsgn-t~G~EAa~~i~~--~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   30 DSLTKLDLSGN-TFGTEAARAIAK--VLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             CceEEEeccCC-chhHHHHHHHHH--HHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            56899999999 6532    2222  5667788888888753 2221   1332          7889999999999876


Q ss_pred             CCcceeecCCCh-hhhcCCCCCcEEEccCcCCCCcchh----------hhhhhCCCCCCcEEEccCccCCCc----chHH
Q 035693          112 SGFSWRLEIPNF-NFFQNLTELRELYLDNVDLSGRRTE----------WCKAMSFLPNLQVLNLSNCLLSDP----INHH  176 (348)
Q Consensus       112 ~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~----------~~~~~~~~~~L~~L~l~~~~~~~~----~~~~  176 (348)
                      ..     .++.+ ..+..+..|++|.|.+|.+......          ......+-++|+++..++|.+...    +...
T Consensus       106 ~~-----g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~  180 (382)
T KOG1909|consen  106 PK-----GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA  180 (382)
T ss_pred             cc-----chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH
Confidence            32     22222 5578899999999999988754322          122345567899999998887643    3456


Q ss_pred             hhhccCCCEEEcccCCCCCCC---hhhhhhcCCCCCEEEccCCcCCC----cccccccCCCCccEEEccCCCCCCCCCCC
Q 035693          177 LANLLSLSVIRLRDNHAVSCQ---VPEFVANLLNLTTLDLSQCDLHG----KFPEKVLQVPTLETLDLSYNSLLQGSLPH  249 (348)
Q Consensus       177 ~~~~~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~~~  249 (348)
                      +...+.|+.+.+..|.+....   ....+..+++|++|++.+|.++.    .+...+..++.|+.|++++|.+...+...
T Consensus       181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a  260 (382)
T KOG1909|consen  181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA  260 (382)
T ss_pred             HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence            677788999999888654332   34567788899999999998864    34456677788889999888776666554


Q ss_pred             CCC-----CCCCcEEEcccCCCCCCC----CccccCCCCCCEEeecCCcc
Q 035693          250 FPK-----NSSLRNLNLKNTSFSGKL----PDSIGNLENLASVDVSSCNF  290 (348)
Q Consensus       250 ~~~-----~~~L~~L~ls~n~~~~~~----~~~l~~~~~L~~L~L~~n~l  290 (348)
                      +..     .++|+.|.+.+|.++..-    ...+...+.|+.|+|++|.+
T Consensus       261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            432     677888888888776321    11223456777777888777

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.38  E-value=1.4e-13  Score=116.99  Aligned_cols=241  Identities=22%  Similarity=0.235  Sum_probs=125.6

Q ss_pred             ccccccccCEEeCCCCCCCCCCCCC------CCCCCcEEecCCCCCCCCcceeecCCCh-----hhhcCCCCCcEEEccC
Q 035693           71 GLFSLQYLQSLNLGFTLFYGFPMPS------SLPRLVTLDLSSREPISGFSWRLEIPNF-----NFFQNLTELRELYLDN  139 (348)
Q Consensus        71 ~l~~~~~L~~L~l~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~~~~-----~~~~~l~~L~~L~l~~  139 (348)
                      .+..+..++.|++++|.|.......      .-++|++.++++-- ++  .....+|..     +.+..+++|++++||+
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tG--R~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD  101 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TG--RLKDEIPEALKMLSKALLGCPKLQKLDLSD  101 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cC--CcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence            4556788888888888776541111      55677777777542 11  011122221     4566777888888888


Q ss_pred             cCCCCcchh-hhhhhCCCCCCcEEEccCccCCCcchHH-------------hhhccCCCEEEcccCCCCCC---Chhhhh
Q 035693          140 VDLSGRRTE-WCKAMSFLPNLQVLNLSNCLLSDPINHH-------------LANLLSLSVIRLRDNHAVSC---QVPEFV  202 (348)
Q Consensus       140 ~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~---~~~~~l  202 (348)
                      |-+....+. +-..+..+..|++|.+.+|.+...-...             ...-++|+++..++|+....   .+...+
T Consensus       102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~  181 (382)
T KOG1909|consen  102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF  181 (382)
T ss_pred             cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence            877654332 2234456777888888887765422111             12235666666666643322   133345


Q ss_pred             hcCCCCCEEEccCCcCCC----cccccccCCCCccEEEccCCCCCCCCCC----CCCCCCCCcEEEcccCCCCCCCCccc
Q 035693          203 ANLLNLTTLDLSQCDLHG----KFPEKVLQVPTLETLDLSYNSLLQGSLP----HFPKNSSLRNLNLKNTSFSGKLPDSI  274 (348)
Q Consensus       203 ~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~L~~L~ls~n~~~~~~~~~l  274 (348)
                      ...+.|+++.+..|.+..    .+...+..++.|+.|++.+|.++.....    .++.++.|+.|++++|.+......++
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~  261 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF  261 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence            555666666666665542    1223455566666666666655433222    23335555555555555543221111


Q ss_pred             -----cCCCCCCEEeecCCccCCC----CcccccCCCCCCEEeCCCCcc
Q 035693          275 -----GNLENLASVDVSSCNFTRP----IPTSMANLTQLFHLDFSSNHF  314 (348)
Q Consensus       275 -----~~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l  314 (348)
                           ...+.|+.+.+.+|.++..    +...+...+.|..|+|++|.+
T Consensus       262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence                 1234555555555555531    111222234555555555555

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=7.7e-13  Score=115.55  Aligned_cols=214  Identities=22%  Similarity=0.190  Sum_probs=148.3

Q ss_pred             CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchH
Q 035693           96 SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINH  175 (348)
Q Consensus        96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  175 (348)
                      ++++|+++.+.++...       ..+.....+.|++++.|+|+.|=+....+ +......+++|+.|+++.|.+..-...
T Consensus       119 n~kkL~~IsLdn~~V~-------~~~~~~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls~Nrl~~~~~s  190 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-------DAGIEEYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLSSNRLSNFISS  190 (505)
T ss_pred             hHHhhhheeecCcccc-------ccchhhhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhcccccccccCCccc
Confidence            7889999999988642       11111347889999999999998776543 334556789999999999987542111


Q ss_pred             -HhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCC-CCCCCCC
Q 035693          176 -HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGS-LPHFPKN  253 (348)
Q Consensus       176 -~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~-~~~~~~~  253 (348)
                       .-..++.|+.|.++.|......+...+..+|+|+.|++..|...........-+..|++|++++|++.+.. ......+
T Consensus       191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l  270 (505)
T KOG3207|consen  191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL  270 (505)
T ss_pred             cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccc
Confidence             11245788999999996554455566678899999999988522122223344668999999999865443 3455568


Q ss_pred             CCCcEEEcccCCCCCC-CCcc-----ccCCCCCCEEeecCCccCCC-CcccccCCCCCCEEeCCCCccCCc
Q 035693          254 SSLRNLNLKNTSFSGK-LPDS-----IGNLENLASVDVSSCNFTRP-IPTSMANLTQLFHLDFSSNHFSDP  317 (348)
Q Consensus       254 ~~L~~L~ls~n~~~~~-~~~~-----l~~~~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~  317 (348)
                      +.|+.|+++.+.+.+. .|+.     ...+++|+.|++..|++.+. ....+..+++|+.|.+..|.+..+
T Consensus       271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            8899999999988742 2322     24568899999999999651 112344567888888888888753

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=9.7e-13  Score=114.94  Aligned_cols=209  Identities=25%  Similarity=0.274  Sum_probs=142.9

Q ss_pred             ccccccCEEeCCCCCCCCCC---CCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhh
Q 035693           73 FSLQYLQSLNLGFTLFYGFP---MPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEW  149 (348)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  149 (348)
                      +++.+|+.+.|+++.+...+   ....|++++.|+++.|-|..+.    .+.  .....+|+|+.|+++.|++.......
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~----~v~--~i~eqLp~Le~LNls~Nrl~~~~~s~  191 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF----PVL--KIAEQLPSLENLNLSSNRLSNFISSN  191 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH----HHH--HHHHhcccchhcccccccccCCcccc
Confidence            46788888888888776653   2237999999999988765421    222  33678899999999988875432211


Q ss_pred             hhhhCCCCCCcEEEccCccCCCc-chHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCccc--ccc
Q 035693          150 CKAMSFLPNLQVLNLSNCLLSDP-INHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFP--EKV  226 (348)
Q Consensus       150 ~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~l  226 (348)
                        .-..+++|+.|.++.|.++-. +...+..+|+|+.|.+..|.... .......-+..|++|++++|.+.. .+  ...
T Consensus       192 --~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~  267 (505)
T KOG3207|consen  192 --TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLID-FDQGYKV  267 (505)
T ss_pred             --chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCcccc-ccccccc
Confidence              122567899999999988743 44556678999999998884211 111222345568889999988763 22  345


Q ss_pred             cCCCCccEEEccCCCCCCCCCCCC------CCCCCCcEEEcccCCCCCCCCc--cccCCCCCCEEeecCCccCC
Q 035693          227 LQVPTLETLDLSYNSLLQGSLPHF------PKNSSLRNLNLKNTSFSGKLPD--SIGNLENLASVDVSSCNFTR  292 (348)
Q Consensus       227 ~~~~~L~~L~l~~~~l~~~~~~~~------~~~~~L~~L~ls~n~~~~~~~~--~l~~~~~L~~L~L~~n~l~~  292 (348)
                      +.++.|..|+++.+++.....+..      ..+++|++|+++.|++. .++.  .+..+++|++|.+..|.+..
T Consensus       268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence            678889999999888766555544      33788999999999885 3332  34556778888877777764

>PLN03150 hypothetical protein; Provisional

Probab=99.27  E-value=5.6e-11  Score=114.44  Aligned_cols=145  Identities=27%  Similarity=0.375  Sum_probs=94.4

Q ss_pred             hHHHHHHHHHhhhCccCCCCCCcccCCCCCCCCCCc----cccceEeCCC-----CCEEEEeCCCCccccccccCCcccc
Q 035693            3 SDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCC----DWNGVDCDEA-----GHVIGLDLSAEPILIGSLENASGLF   73 (348)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~----~~~~~~c~~~-----~~l~~L~ls~~~~~~~~~~~~~~l~   73 (348)
                      ..|+.+|..+|.++. ++.      ..+|. ++.|+    .|.|+.|...     ..++.|+|+++ .+.+.+|.  .+.
T Consensus       371 ~~~~~aL~~~k~~~~-~~~------~~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n-~L~g~ip~--~i~  439 (623)
T PLN03150        371 LEEVSALQTLKSSLG-LPL------RFGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ-GLRGFIPN--DIS  439 (623)
T ss_pred             chHHHHHHHHHHhcC-Ccc------cCCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCC-CccccCCH--HHh
Confidence            468899999999974 222      13785 33332    6999999632     24889999999 88888886  788


Q ss_pred             cccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhh
Q 035693           74 SLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAM  153 (348)
Q Consensus        74 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  153 (348)
                      ++++|+.|+|++|.+.+. +|                           ..  +..+++|+.|+|++|++....+   ..+
T Consensus       440 ~L~~L~~L~Ls~N~l~g~-iP---------------------------~~--~~~l~~L~~LdLs~N~lsg~iP---~~l  486 (623)
T PLN03150        440 KLRHLQSINLSGNSIRGN-IP---------------------------PS--LGSITSLEVLDLSYNSFNGSIP---ESL  486 (623)
T ss_pred             CCCCCCEEECCCCcccCc-CC---------------------------hH--HhCCCCCCEEECCCCCCCCCCc---hHH
Confidence            888888888888877654 33                           22  4555556666666665554443   345


Q ss_pred             CCCCCCcEEEccCccCCCcchHHhhhc-cCCCEEEcccC
Q 035693          154 SFLPNLQVLNLSNCLLSDPINHHLANL-LSLSVIRLRDN  191 (348)
Q Consensus       154 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~  191 (348)
                      ..+++|++|++++|.+++.+|..+... .++..+++.+|
T Consensus       487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence            566666666666666666666555432 34455555555

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.11  E-value=1.1e-10  Score=92.84  Aligned_cols=126  Identities=25%  Similarity=0.368  Sum_probs=47.6

Q ss_pred             cCCCCCEEEccCCcCCCccccccc-CCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccc-cCCCCCC
Q 035693          204 NLLNLTTLDLSQCDLHGKFPEKVL-QVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSI-GNLENLA  281 (348)
Q Consensus       204 ~l~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l-~~~~~L~  281 (348)
                      +...+++|++.++.+. .+ +.++ .+.+|+.|++++|.+.  .++.+..++.|++|++++|.++ .+.+.+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~--~l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT--KLEGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc--cccCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence            4446778888888776 22 3344 4677888888888763  4455666788888888888887 344334 3578888


Q ss_pred             EEeecCCccCC-CCcccccCCCCCCEEeCCCCccCCccCc---hhhhhhcCCCeeecc
Q 035693          282 SVDVSSCNFTR-PIPTSMANLTQLFHLDFSSNHFSDPIPT---LRLYMSRNLNYLNLS  335 (348)
Q Consensus       282 ~L~L~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~l~  335 (348)
                      +|++++|++.+ ..-..+..+++|+.|++.+|++... +.   .++..+|+|+.||-.
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence            88888888876 1224566788888999998888753 32   245556888888743

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.11  E-value=9.9e-11  Score=93.21  Aligned_cols=108  Identities=31%  Similarity=0.276  Sum_probs=22.9

Q ss_pred             cccccccCEEeCCCCCCCCCCCCC-CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhh
Q 035693           72 LFSLQYLQSLNLGFTLFYGFPMPS-SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWC  150 (348)
Q Consensus        72 l~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  150 (348)
                      +.+..+++.|+|++|.|+...-.. .+.+|+.|++++|.+..       +   +.+..++.|++|++++|+++.....  
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~-------l---~~l~~L~~L~~L~L~~N~I~~i~~~--   82 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK-------L---EGLPGLPRLKTLDLSNNRISSISEG--   82 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S------------TT----TT--EEE--SS---S-CHH--
T ss_pred             cccccccccccccccccccccchhhhhcCCCEEECCCCCCcc-------c---cCccChhhhhhcccCCCCCCccccc--
Confidence            334445666666666665542222 34555555555554421       1   1144455555555555555543221  


Q ss_pred             hhhCCCCCCcEEEccCccCCCc-chHHhhhccCCCEEEcccCC
Q 035693          151 KAMSFLPNLQVLNLSNCLLSDP-INHHLANLLSLSVIRLRDNH  192 (348)
Q Consensus       151 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~  192 (348)
                       ....+++|++|++++|.+... ....+..+++|+.|++.+|+
T Consensus        83 -l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   83 -LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             -HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             -hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence             012345555555555554432 11334444555555555553

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.04  E-value=2.7e-11  Score=101.39  Aligned_cols=129  Identities=26%  Similarity=0.323  Sum_probs=73.8

Q ss_pred             cCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEE
Q 035693          181 LSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLN  260 (348)
Q Consensus       181 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~  260 (348)
                      ..|+++++++|. ++ .+.+...-.|.++.|++++|.+. ++ ..+..+++|+.|++++|.+. .....-..+.+.++|.
T Consensus       284 q~LtelDLS~N~-I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNL-IT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhhccccccc-hh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            456666777663 22 24445555666777777777665 22 22556666777777766542 1111222245666677


Q ss_pred             cccCCCCCCCCccccCCCCCCEEeecCCccCC-CCcccccCCCCCCEEeCCCCccCC
Q 035693          261 LKNTSFSGKLPDSIGNLENLASVDVSSCNFTR-PIPTSMANLTQLFHLDFSSNHFSD  316 (348)
Q Consensus       261 ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~  316 (348)
                      +++|.+.. + ..++.+-+|..|++++|+|.. .-...++++|+|+.+.|.+|++.+
T Consensus       359 La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  359 LAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            77766541 1 234555667777777777764 223445667777777777777765

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.04  E-value=5.7e-10  Score=102.45  Aligned_cols=180  Identities=33%  Similarity=0.413  Sum_probs=103.5

Q ss_pred             ccccccccCEEeCCCCCCCCCCCCC-CC-CCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchh
Q 035693           71 GLFSLQYLQSLNLGFTLFYGFPMPS-SL-PRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTE  148 (348)
Q Consensus        71 ~l~~~~~L~~L~l~~~~~~~~~~~~-~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  148 (348)
                      .+..++.++.|++.++.+++..-.. .. ++|+.|++++|.+.       .++..  +..+++|+.|++++|++.+... 
T Consensus       111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-------~l~~~--~~~l~~L~~L~l~~N~l~~l~~-  180 (394)
T COG4886         111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-------SLPSP--LRNLPNLKNLDLSFNDLSDLPK-  180 (394)
T ss_pred             hhhcccceeEEecCCcccccCccccccchhhcccccccccchh-------hhhhh--hhccccccccccCCchhhhhhh-
Confidence            3445566777777777666642112 33 26777777777643       22112  5666777777777777665443 


Q ss_pred             hhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccC
Q 035693          149 WCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQ  228 (348)
Q Consensus       149 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~  228 (348)
                         .....+.|+.|++++|.+.. +|........|++|.+++|+..  ..+..+..+..+..+.+.++.+. ..+..+..
T Consensus       181 ---~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~--~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~  253 (394)
T COG4886         181 ---LLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII--ELLSSLSNLKNLSGLELSNNKLE-DLPESIGN  253 (394)
T ss_pred             ---hhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce--ecchhhhhcccccccccCCceee-eccchhcc
Confidence               22256667777777777665 4444444455667777666322  23444555566666666666554 33455566


Q ss_pred             CCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCC
Q 035693          229 VPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGK  269 (348)
Q Consensus       229 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~  269 (348)
                      ++.++.|++++|.+.....  +....+++.|+++++.+...
T Consensus       254 l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         254 LSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             ccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence            6667777777766533322  55566677777777666543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.01  E-value=7.1e-11  Score=98.89  Aligned_cols=221  Identities=22%  Similarity=0.238  Sum_probs=135.9

Q ss_pred             CEEEEeCCCCc-------cccccccCCcccccccccCEEeCCCCCCCCCC-CCCCCCCCcEEecCCCCCCCCcceeecCC
Q 035693           50 HVIGLDLSAEP-------ILIGSLENASGLFSLQYLQSLNLGFTLFYGFP-MPSSLPRLVTLDLSSREPISGFSWRLEIP  121 (348)
Q Consensus        50 ~l~~L~ls~~~-------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  121 (348)
                      +++.|.+++..       .....+|.  .+.-+.+|..+.++++.-..+. +...-|.|+++.+.+..+..       .+
T Consensus       183 ~l~~l~vs~~~~p~~~sni~~~~l~f--~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~-------~~  253 (490)
T KOG1259|consen  183 QLVALVVTPVKDPIDRSNIIPNRLSF--NLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQD-------VP  253 (490)
T ss_pred             heeEEEecCCCCCCcccccccccccc--chHHhhhhheeeeeccchhheeceeecCchhheeeeecccccc-------cc
Confidence            46777777641       11123333  4556677777777766443321 22245667777666543211       01


Q ss_pred             ChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhh
Q 035693          122 NFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEF  201 (348)
Q Consensus       122 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  201 (348)
                      .   +  .|.-...+.....-+.........+.....|+++++++|.|+. +..++.-.|+++.|+++.|.+..   ...
T Consensus       254 ~---l--~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~---v~n  324 (490)
T KOG1259|consen  254 S---L--LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRT---VQN  324 (490)
T ss_pred             c---c--cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh-hhhhhhhccceeEEeccccceee---ehh
Confidence            0   1  1111111221111111111111223334678899999998886 67788888999999999985433   233


Q ss_pred             hhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCC--ccccCCCC
Q 035693          202 VANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLP--DSIGNLEN  279 (348)
Q Consensus       202 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~--~~l~~~~~  279 (348)
                      +..+++|+.|++++|.++ ....+=..+-++++|.+++|.+  +....+..+-+|..||+++|++. .+.  ..++++|.
T Consensus       325 La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~i--E~LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPC  400 (490)
T KOG1259|consen  325 LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKI--ETLSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPC  400 (490)
T ss_pred             hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhH--hhhhhhHhhhhheeccccccchh-hHHHhcccccccH
Confidence            778889999999999876 3333334567889999998865  44455555778999999999886 332  35788999


Q ss_pred             CCEEeecCCccCC
Q 035693          280 LASVDVSSCNFTR  292 (348)
Q Consensus       280 L~~L~L~~n~l~~  292 (348)
                      |+++.|.+|++..
T Consensus       401 LE~l~L~~NPl~~  413 (490)
T KOG1259|consen  401 LETLRLTGNPLAG  413 (490)
T ss_pred             HHHHhhcCCCccc
Confidence            9999999999986

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.00  E-value=1.3e-09  Score=100.04  Aligned_cols=177  Identities=34%  Similarity=0.509  Sum_probs=82.8

Q ss_pred             CCCCCcEEEccCcCCCCcchhhhhhhCCCC-CCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCC
Q 035693          128 NLTELRELYLDNVDLSGRRTEWCKAMSFLP-NLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLL  206 (348)
Q Consensus       128 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~  206 (348)
                      ..+.++.+.+.++.+++..+    ...... +|++|++++|.+.. ++..+..+++|+.|+++.|+...  ++......+
T Consensus       114 ~~~~l~~L~l~~n~i~~i~~----~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~  186 (394)
T COG4886         114 ELTNLTSLDLDNNNITDIPP----LIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLS  186 (394)
T ss_pred             cccceeEEecCCcccccCcc----ccccchhhcccccccccchhh-hhhhhhccccccccccCCchhhh--hhhhhhhhh
Confidence            33455555555555554432    122232 55555555555544 33444555555555555553221  222222444


Q ss_pred             CCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeec
Q 035693          207 NLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVS  286 (348)
Q Consensus       207 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~  286 (348)
                      .|+.|++++|.+. .+|........|+++.+++|+. ......+.....+..+.+.+|++. ..+..++.+++++.|+++
T Consensus       187 ~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s  263 (394)
T COG4886         187 NLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLS  263 (394)
T ss_pred             hhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCceee-eccchhccccccceeccc
Confidence            5555555555554 3444333334455555555531 122233333444444545555444 223444445555555555


Q ss_pred             CCccCCCCcccccCCCCCCEEeCCCCccCC
Q 035693          287 SCNFTRPIPTSMANLTQLFHLDFSSNHFSD  316 (348)
Q Consensus       287 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~  316 (348)
                      +|.+....+  ++...+++.|++++|.+..
T Consensus       264 ~n~i~~i~~--~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         264 NNQISSISS--LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             ccccccccc--ccccCccCEEeccCccccc
Confidence            555555222  4445555555555555443

>PLN03150 hypothetical protein; Provisional

Probab=98.99  E-value=1.3e-09  Score=105.07  Aligned_cols=113  Identities=27%  Similarity=0.364  Sum_probs=77.2

Q ss_pred             ccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCC
Q 035693          232 LETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSS  311 (348)
Q Consensus       232 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~  311 (348)
                      ++.|++++|.+.......+..+++|+.|++++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..+..+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            56677777766555555566677777777777777777777777777777777777777777777777777777777777


Q ss_pred             CccCCccCchhhhhhcCCCeeecccCcccccCC
Q 035693          312 NHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGIS  344 (348)
Q Consensus       312 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip  344 (348)
                      |++.+.+|..+.....++..+++.+|.....+|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCC
Confidence            777777776654433455667777775333333

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.99  E-value=1.8e-11  Score=110.53  Aligned_cols=198  Identities=24%  Similarity=0.338  Sum_probs=154.4

Q ss_pred             cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCC
Q 035693          127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLL  206 (348)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~  206 (348)
                      ..+..-...+++.|++...+.    .+..+..|+.+.+..|.+.. +|..+..+..|++|+|+.|+..  .++..+..+ 
T Consensus        72 ~~ltdt~~aDlsrNR~~elp~----~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS--~lp~~lC~l-  143 (722)
T KOG0532|consen   72 YDLTDTVFADLSRNRFSELPE----EACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS--HLPDGLCDL-  143 (722)
T ss_pred             ccccchhhhhccccccccCch----HHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh--cCChhhhcC-
Confidence            445555677888888876654    44555678888888888876 7888999999999999998543  355566565 


Q ss_pred             CCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeec
Q 035693          207 NLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVS  286 (348)
Q Consensus       207 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~  286 (348)
                      -|+.|.+++|+++ .+|+.++..++|..|+.+.|.+ ...+..++.+.+|+.|++..|.+. .+|..+..+ .|..|+++
T Consensus       144 pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfS  219 (722)
T KOG0532|consen  144 PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFS  219 (722)
T ss_pred             cceeEEEecCccc-cCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecc
Confidence            4899999999988 7888888888999999999975 344566777889999999999988 677777754 58899999


Q ss_pred             CCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhh--hhcCCCeeecccCc
Q 035693          287 SCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLY--MSRNLNYLNLSSND  338 (348)
Q Consensus       287 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~L~~L~l~~n~  338 (348)
                      +|++.. +|-.+.++..|++|-|.+|++.. -|..+..  ...-.++|+..-|+
T Consensus       220 cNkis~-iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  220 CNKISY-LPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             cCceee-cchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence            999998 88888999999999999999987 4443322  12456788887775

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.97  E-value=2.2e-11  Score=109.86  Aligned_cols=197  Identities=22%  Similarity=0.273  Sum_probs=151.0

Q ss_pred             CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchH
Q 035693           96 SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINH  175 (348)
Q Consensus        96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  175 (348)
                      .+.--...+++.|.+.       .+|..  +..+..|+.+.+..|.+-.++    ..+.++..|++++++.|.++. +|.
T Consensus        73 ~ltdt~~aDlsrNR~~-------elp~~--~~~f~~Le~liLy~n~~r~ip----~~i~~L~~lt~l~ls~NqlS~-lp~  138 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-------ELPEE--ACAFVSLESLILYHNCIRTIP----EAICNLEALTFLDLSSNQLSH-LPD  138 (722)
T ss_pred             cccchhhhhccccccc-------cCchH--HHHHHHHHHHHHHhccceecc----hhhhhhhHHHHhhhccchhhc-CCh
Confidence            4556677888888764       55655  566677888888888776554    467889999999999999887 666


Q ss_pred             HhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCC
Q 035693          176 HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSS  255 (348)
Q Consensus       176 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  255 (348)
                      .+..++ |+.|.+++|+..  .++..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. ..++.+.. -.
T Consensus       139 ~lC~lp-Lkvli~sNNkl~--~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-Lp  212 (722)
T KOG0532|consen  139 GLCDLP-LKVLIVSNNKLT--SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LP  212 (722)
T ss_pred             hhhcCc-ceeEEEecCccc--cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-Cc
Confidence            666654 889999998543  36777787888999999999987 77888899999999999999863 33444443 35


Q ss_pred             CcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccc--cCCCCCCEEeCCCCc
Q 035693          256 LRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSM--ANLTQLFHLDFSSNH  313 (348)
Q Consensus       256 L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l--~~~~~L~~L~l~~n~  313 (348)
                      |.+||++.|++. .+|..|..+..|++|-|.+|.+........  +...-.++|+...|+
T Consensus       213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence            899999999998 889999999999999999999987333221  222345677777774

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.84  E-value=1.7e-10  Score=100.58  Aligned_cols=280  Identities=18%  Similarity=0.170  Sum_probs=142.4

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCC-CCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTL-FYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFN  124 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  124 (348)
                      +.+++|.+.|+... +.-+.-....++++++.|++.++. +++.....   .|++|++|++..|...+.    ..+.  .
T Consensus       138 g~lk~LSlrG~r~v-~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~----~~Lk--~  210 (483)
T KOG4341|consen  138 GFLKELSLRGCRAV-GDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD----VSLK--Y  210 (483)
T ss_pred             cccccccccccccC-CcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH----HHHH--H
Confidence            57888888888333 333322234688888888887763 33321111   788888888888752110    0111  1


Q ss_pred             hhcCCCCCcEEEccCcC-CCCcchhhhhhhCCCCCCcEEEccCccCCC--cchHHhhhccCCCEEEcccCCCCCCCh-hh
Q 035693          125 FFQNLTELRELYLDNVD-LSGRRTEWCKAMSFLPNLQVLNLSNCLLSD--PINHHLANLLSLSVIRLRDNHAVSCQV-PE  200 (348)
Q Consensus       125 ~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~  200 (348)
                      ....|++|++++++.|. +.+...+  ....++..++.+-..+|.=.+  .+...-..+..+.++++..|..+++.. ..
T Consensus       211 la~gC~kL~~lNlSwc~qi~~~gv~--~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~  288 (483)
T KOG4341|consen  211 LAEGCRKLKYLNLSWCPQISGNGVQ--ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL  288 (483)
T ss_pred             HHHhhhhHHHhhhccCchhhcCcch--HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence            24578888888888875 3332111  233445555555555542111  011122333445555655554444322 22


Q ss_pred             hhhcCCCCCEEEccCCcCCC-ccccc-ccCCCCccEEEccCCC-CCCCCCCCCCC-CCCCcEEEcccCCCCC--CCCccc
Q 035693          201 FVANLLNLTTLDLSQCDLHG-KFPEK-VLQVPTLETLDLSYNS-LLQGSLPHFPK-NSSLRNLNLKNTSFSG--KLPDSI  274 (348)
Q Consensus       201 ~l~~l~~L~~L~l~~~~~~~-~~~~~-l~~~~~L~~L~l~~~~-l~~~~~~~~~~-~~~L~~L~ls~n~~~~--~~~~~l  274 (348)
                      .-..+..|+++..+++...+ ..-.. .....+|+.+-+..|+ ++...+..++. ++.|+.+++.++....  .+...-
T Consensus       289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls  368 (483)
T KOG4341|consen  289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS  368 (483)
T ss_pred             HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence            22344566666666554321 11111 2335667777766664 33344444444 5666666666664321  111112


Q ss_pred             cCCCCCCEEeecCCccCCCC-----cccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccC
Q 035693          275 GNLENLASVDVSSCNFTRPI-----PTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSN  337 (348)
Q Consensus       275 ~~~~~L~~L~L~~n~l~~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n  337 (348)
                      .+++.|+.+++++|....+.     ...-..+..+..+.+++++.+.+..-.....+++|+.+++-++
T Consensus       369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            34566666666666443211     1122334566666666666543222233444466666666555

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.82  E-value=5.1e-09  Score=103.49  Aligned_cols=207  Identities=24%  Similarity=0.290  Sum_probs=122.2

Q ss_pred             cccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhh
Q 035693           72 LFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCK  151 (348)
Q Consensus        72 l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  151 (348)
                      ..+....+.+.+.++.+........+++|+.|-+..|..      ........+|..+|.|++|++++|.-...   ++.
T Consensus       519 ~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~------~l~~is~~ff~~m~~LrVLDLs~~~~l~~---LP~  589 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD------WLLEISGEFFRSLPLLRVLDLSGNSSLSK---LPS  589 (889)
T ss_pred             ccchhheeEEEEeccchhhccCCCCCCccceEEEeecch------hhhhcCHHHHhhCcceEEEECCCCCccCc---CCh
Confidence            445567777777777776654444777888888888741      01122224478889999999987653332   336


Q ss_pred             hhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCC--CcccccccCC
Q 035693          152 AMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLH--GKFPEKVLQV  229 (348)
Q Consensus       152 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~l~~~  229 (348)
                      .++.+-+||+|+++++.+.. +|..+.++.+|.+|++..+.... ..+.....+.+|++|.+......  ......+..+
T Consensus       590 ~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~L  667 (889)
T KOG4658|consen  590 SIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRLE-SIPGILLELQSLRVLRLPRSALSNDKLLLKELENL  667 (889)
T ss_pred             HHhhhhhhhcccccCCCccc-cchHHHHHHhhheeccccccccc-cccchhhhcccccEEEeeccccccchhhHHhhhcc
Confidence            78888889999999888885 88888888899999988764332 23455556888888888765422  1222233445


Q ss_pred             CCccEEEccCCCCCCCCCCCCCCCCCCc----EEEcccCCCCCCCCccccCCCCCCEEeecCCccCC
Q 035693          230 PTLETLDLSYNSLLQGSLPHFPKNSSLR----NLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR  292 (348)
Q Consensus       230 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~----~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~  292 (348)
                      .+|+.+.+.....  .....+.....|.    .+.+.++... ..+..+..+.+|+.|.+.++.+.+
T Consensus       668 e~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  668 EHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             cchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence            5555555543321  1111122211221    2222222222 223344555666666666666654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.74  E-value=6e-09  Score=86.30  Aligned_cols=234  Identities=20%  Similarity=0.190  Sum_probs=146.4

Q ss_pred             CCEEEEeCCCCccccc----cccCCcccccccccCEEeCCCCCCCCC---CCCC----------CCCCCcEEecCCCCCC
Q 035693           49 GHVIGLDLSAEPILIG----SLENASGLFSLQYLQSLNLGFTLFYGF---PMPS----------SLPRLVTLDLSSREPI  111 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~----------~~~~L~~L~l~~~~~~  111 (348)
                      ..+++++|||| .+..    .+-.  .+++-.+|+..+++.- +++.   .+++          .||+|+.+++|+|.|.
T Consensus        30 d~~~evdLSGN-tigtEA~e~l~~--~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          30 DELVEVDLSGN-TIGTEAMEELCN--VIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             cceeEEeccCC-cccHHHHHHHHH--HHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            56899999999 5432    1221  4566677888887753 2221   1121          8999999999999875


Q ss_pred             CCcceeecCCCh--hhhcCCCCCcEEEccCcCCCCcchh----------hhhhhCCCCCCcEEEccCccCCCcc----hH
Q 035693          112 SGFSWRLEIPNF--NFFQNLTELRELYLDNVDLSGRRTE----------WCKAMSFLPNLQVLNLSNCLLSDPI----NH  175 (348)
Q Consensus       112 ~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~----------~~~~~~~~~~L~~L~l~~~~~~~~~----~~  175 (348)
                      .      ..|..  ++++.-..|++|.+++|.+......          ...-..+-|.|+++.+..|.+..-.    ..
T Consensus       106 ~------~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~  179 (388)
T COG5238         106 S------EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAA  179 (388)
T ss_pred             c------ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHH
Confidence            3      22222  5678888999999999987643221          1122345678999999988775421    12


Q ss_pred             HhhhccCCCEEEcccCCCCCCCh----hhhhhcCCCCCEEEccCCcCCC----cccccccCCCCccEEEccCCCCCCCCC
Q 035693          176 HLANLLSLSVIRLRDNHAVSCQV----PEFVANLLNLTTLDLSQCDLHG----KFPEKVLQVPTLETLDLSYNSLLQGSL  247 (348)
Q Consensus       176 ~~~~~~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~  247 (348)
                      .+.....|+++.+..|.+-...+    ...+..+.+|+.|++.+|.++.    .+...+..++.|++|.+.+|-++..+.
T Consensus       180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~  259 (388)
T COG5238         180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGV  259 (388)
T ss_pred             HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccH
Confidence            23334688888888884433211    1233456788999999988763    233455667778889888887665554


Q ss_pred             CC----CCC--CCCCcEEEcccCCCCCCC------Cccc-cCCCCCCEEeecCCccCC
Q 035693          248 PH----FPK--NSSLRNLNLKNTSFSGKL------PDSI-GNLENLASVDVSSCNFTR  292 (348)
Q Consensus       248 ~~----~~~--~~~L~~L~ls~n~~~~~~------~~~l-~~~~~L~~L~L~~n~l~~  292 (348)
                      ..    |..  .++|..|...+|.+.+.+      +... ..++-|..|.+.+|++..
T Consensus       260 ~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         260 KSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             HHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            33    222  677888888777654321      1111 245566666677777764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=4.7e-10  Score=93.91  Aligned_cols=179  Identities=22%  Similarity=0.256  Sum_probs=90.6

Q ss_pred             CCcEEEccCccCCCc-chHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCc-CCC-cccccccCCCCccE
Q 035693          158 NLQVLNLSNCLLSDP-INHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCD-LHG-KFPEKVLQVPTLET  234 (348)
Q Consensus       158 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~l~~~~~L~~  234 (348)
                      .|++|+++...++.. ....++.|.+|+.|.+.++ ...+.+...+.....|+.++++++. ++. ...-.+..++.|.+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            366666666655543 2334566666666666666 3444555556666666666666653 221 11223455666666


Q ss_pred             EEccCCCCCCCCCCCCCC--CCCCcEEEcccCCCC---CCCCccccCCCCCCEEeecCCccC-CCCcccccCCCCCCEEe
Q 035693          235 LDLSYNSLLQGSLPHFPK--NSSLRNLNLKNTSFS---GKLPDSIGNLENLASVDVSSCNFT-RPIPTSMANLTQLFHLD  308 (348)
Q Consensus       235 L~l~~~~l~~~~~~~~~~--~~~L~~L~ls~n~~~---~~~~~~l~~~~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~  308 (348)
                      |+++.|.+..........  -++|+.|+++|+.-.   ..+..-...+++|.+|+|+.|-.. ......+.+++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            666666544333322222  345666666665321   011111234566666666665332 23334455566666666


Q ss_pred             CCCCccCCccCchhhhhhcCCCeeecccC
Q 035693          309 FSSNHFSDPIPTLRLYMSRNLNYLNLSSN  337 (348)
Q Consensus       309 l~~n~l~~~~~~~~~~~~~~L~~L~l~~n  337 (348)
                      ++.|......-...+...|+|.+||+-++
T Consensus       345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            66665332111111222256666665543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.70  E-value=1.5e-09  Score=100.06  Aligned_cols=223  Identities=23%  Similarity=0.203  Sum_probs=112.1

Q ss_pred             ccccccccCEEeCCCCCCCCCCC-CCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhh
Q 035693           71 GLFSLQYLQSLNLGFTLFYGFPM-PSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEW  149 (348)
Q Consensus        71 ~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  149 (348)
                      .+..+++|+.|++..|.+....- ...+++|++|++++|.++..          ..+..++.|+.|++++|.+....   
T Consensus        90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i----------~~l~~l~~L~~L~l~~N~i~~~~---  156 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL----------EGLSTLTLLKELNLSGNLISDIS---  156 (414)
T ss_pred             ccccccceeeeeccccchhhcccchhhhhcchheeccccccccc----------cchhhccchhhheeccCcchhcc---
Confidence            35566666777777666666533 34666777777776655321          11455555666677666665433   


Q ss_pred             hhhhCCCCCCcEEEccCccCCCcch-HHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccC
Q 035693          150 CKAMSFLPNLQVLNLSNCLLSDPIN-HHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQ  228 (348)
Q Consensus       150 ~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~  228 (348)
                        .+..+..|+.+++++|.+...-+ . ...+.+++.+.+.+|.+.......   .+..+..+.+..|.+...  +.+..
T Consensus       157 --~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~---~~~~l~~~~l~~n~i~~~--~~l~~  228 (414)
T KOG0531|consen  157 --GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLD---LLKKLVLLSLLDNKISKL--EGLNE  228 (414)
T ss_pred             --CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchH---HHHHHHHhhcccccceec--cCccc
Confidence              24446666666666666654322 1 455566666666666333222111   122222234555544311  11222


Q ss_pred             CCC--ccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCC---CCcc-cccCCC
Q 035693          229 VPT--LETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR---PIPT-SMANLT  302 (348)
Q Consensus       229 ~~~--L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~---~~~~-~l~~~~  302 (348)
                      ...  |+.+++.++++.... ..+..+..+..|++..+++...  ..+.....+..+....+.+..   .... .....+
T Consensus       229 ~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (414)
T KOG0531|consen  229 LVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAP  305 (414)
T ss_pred             chhHHHHHHhcccCcccccc-ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccc
Confidence            222  666666666543211 3333345566666666655421  112233444445555555442   1111 134455


Q ss_pred             CCCEEeCCCCccCCc
Q 035693          303 QLFHLDFSSNHFSDP  317 (348)
Q Consensus       303 ~L~~L~l~~n~l~~~  317 (348)
                      .+..+.+.+|++...
T Consensus       306 ~~~~~~~~~~~~~~~  320 (414)
T KOG0531|consen  306 TLVTLTLELNPIRKI  320 (414)
T ss_pred             cccccccccCccccc
Confidence            666666666666543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.70  E-value=1e-08  Score=67.19  Aligned_cols=59  Identities=39%  Similarity=0.575  Sum_probs=26.6

Q ss_pred             CCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCc
Q 035693          255 SLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNH  313 (348)
Q Consensus       255 ~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~  313 (348)
                      +|++|++++|++....+..+..+++|++|++++|.+....+.++..+++|+.|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444444444442222344444444444444444444333444444444444444443

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=4.5e-10  Score=93.97  Aligned_cols=136  Identities=25%  Similarity=0.313  Sum_probs=58.4

Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCcc-CCCc-chHHhhhccCCCEEEcccCCCCCCChhhhhh
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCL-LSDP-INHHLANLLSLSVIRLRDNHAVSCQVPEFVA  203 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~  203 (348)
                      +..|.+|+.|.+.++++.+...   ..+....+|+.|+++.++ ++.. .--.+.+|..|..|+++.|...+..+...+.
T Consensus       206 Ls~C~kLk~lSlEg~~LdD~I~---~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~  282 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLDDPIV---NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA  282 (419)
T ss_pred             HHHHHhhhhccccccccCcHHH---HHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh
Confidence            4555555555555555544322   344455555555555542 2221 1123344555555555555333322222222


Q ss_pred             cC-CCCCEEEccCCcCC---CcccccccCCCCccEEEccCCCC-CCCCCCCCCCCCCCcEEEcccC
Q 035693          204 NL-LNLTTLDLSQCDLH---GKFPEKVLQVPTLETLDLSYNSL-LQGSLPHFPKNSSLRNLNLKNT  264 (348)
Q Consensus       204 ~l-~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~l-~~~~~~~~~~~~~L~~L~ls~n  264 (348)
                      .. +.|..|+++|+.-.   +.+......+++|.+|++++|.. ....+..|.+++.|++|.++.|
T Consensus       283 hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC  348 (419)
T KOG2120|consen  283 HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC  348 (419)
T ss_pred             hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence            22 23445555544321   11111223445555555555432 1122233334445555555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.67  E-value=1.5e-08  Score=66.38  Aligned_cols=61  Identities=41%  Similarity=0.572  Sum_probs=53.8

Q ss_pred             CCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcc
Q 035693          278 ENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDL  339 (348)
Q Consensus       278 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l  339 (348)
                      ++|++|++++|++....+..+..+++|++|++++|++.. ++...+..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCCcC
Confidence            578999999999999766788999999999999999976 6666666779999999999975

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.60  E-value=2.1e-09  Score=93.99  Aligned_cols=275  Identities=20%  Similarity=0.203  Sum_probs=171.9

Q ss_pred             CCEEEEeCCCCccccccccCCccc-ccccccCEEeCCCC-CCCCCCCC---CCCCCCcEEecCCCCCCCCcceeecCCCh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGL-FSLQYLQSLNLGFT-LFYGFPMP---SSLPRLVTLDLSSREPISGFSWRLEIPNF  123 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~-~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  123 (348)
                      +++++|++.+|..+++..-.  .+ ..+++|+.|++..+ .+++..+.   +.|++|+++++++|.-..    ...+...
T Consensus       164 pnIehL~l~gc~~iTd~s~~--sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~----~~gv~~~  237 (483)
T KOG4341|consen  164 PNIEHLALYGCKKITDSSLL--SLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQIS----GNGVQAL  237 (483)
T ss_pred             CchhhhhhhcceeccHHHHH--HHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhh----cCcchHH
Confidence            67889999999555443322  33 57899999999884 66665222   289999999999997322    1122233


Q ss_pred             hhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCcc-CCCc-chHHhhhccCCCEEEcccCCCCCCChhhh
Q 035693          124 NFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCL-LSDP-INHHLANLLSLSVIRLRDNHAVSCQVPEF  201 (348)
Q Consensus       124 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  201 (348)
                        +.++..++.+.+.+|.-.+.. .+...-..+..+..+++..|. +++. +...-..+.+|+.|..+++...+......
T Consensus       238 --~rG~~~l~~~~~kGC~e~~le-~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a  314 (483)
T KOG4341|consen  238 --QRGCKELEKLSLKGCLELELE-ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA  314 (483)
T ss_pred             --hccchhhhhhhhcccccccHH-HHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH
Confidence              677888888888776433221 222233455667777766664 3332 22333456788999998886655544444


Q ss_pred             h-hcCCCCCEEEccCCcC-CCcccccc-cCCCCccEEEccCCCCCCCC-CCCCCC-CCCCcEEEcccCCC-CCC----CC
Q 035693          202 V-ANLLNLTTLDLSQCDL-HGKFPEKV-LQVPTLETLDLSYNSLLQGS-LPHFPK-NSSLRNLNLKNTSF-SGK----LP  271 (348)
Q Consensus       202 l-~~l~~L~~L~l~~~~~-~~~~~~~l-~~~~~L~~L~l~~~~l~~~~-~~~~~~-~~~L~~L~ls~n~~-~~~----~~  271 (348)
                      + .+.++|+++.++.|+. +..-...+ .+++.|+.+++.++...... +..+.. ++.|+.+.++.|.. +++    +.
T Consensus       315 Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~  394 (483)
T KOG4341|consen  315 LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS  394 (483)
T ss_pred             HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence            4 4667899999988863 22211222 34678889999888654333 333333 78899999998753 322    11


Q ss_pred             ccccCCCCCCEEeecCCccCC-CCcccccCCCCCCEEeCCCCc-cCCccCchhhhhhcCCCee
Q 035693          272 DSIGNLENLASVDVSSCNFTR-PIPTSMANLTQLFHLDFSSNH-FSDPIPTLRLYMSRNLNYL  332 (348)
Q Consensus       272 ~~l~~~~~L~~L~L~~n~l~~-~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L  332 (348)
                      ..-.....|+.+.+.+++... ..-+.+..+++|+.+++.+++ ++.+...-+...+|+++..
T Consensus       395 ~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~  457 (483)
T KOG4341|consen  395 SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH  457 (483)
T ss_pred             hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence            222455678899999987753 444566778899999998886 4333223333344555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.55  E-value=2.9e-08  Score=91.56  Aligned_cols=246  Identities=28%  Similarity=0.293  Sum_probs=137.7

Q ss_pred             cccccCEEeCCCCCCCCC-CCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhh
Q 035693           74 SLQYLQSLNLGFTLFYGF-PMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA  152 (348)
Q Consensus        74 ~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  152 (348)
                      .+..++.++++.|.+... .....+.+|+.|++.+|.+..       +...  +..+++|++|++++|.++....     
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-------i~~~--l~~~~~L~~L~ls~N~I~~i~~-----  135 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-------IENL--LSSLVNLQVLDLSFNKITKLEG-----  135 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhh-------cccc--hhhhhcchheeccccccccccc-----
Confidence            456666666777766652 123467777777777776542       2221  4557777788888777765543     


Q ss_pred             hCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCc
Q 035693          153 MSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTL  232 (348)
Q Consensus       153 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L  232 (348)
                      +..+..|+.|++.+|.+...  ..+..+..|+.+++++|++....... ...+..++.+++.+|.+..  .+.+.....+
T Consensus       136 l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l  210 (414)
T KOG0531|consen  136 LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKL  210 (414)
T ss_pred             hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHH
Confidence            55566677777777777642  23344677777777777433211101 4566677777777776652  2223333444


Q ss_pred             cEEEccCCCCCCCCCCCCCCCC--CCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCC
Q 035693          233 ETLDLSYNSLLQGSLPHFPKNS--SLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFS  310 (348)
Q Consensus       233 ~~L~l~~~~l~~~~~~~~~~~~--~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~  310 (348)
                      ..+++..|.+...  ..+....  .|+.+++++|.+. ..+..+..+..+..+++..+.+...  ..+...+.+..+...
T Consensus       211 ~~~~l~~n~i~~~--~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~  285 (414)
T KOG0531|consen  211 VLLSLLDNKISKL--EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLN  285 (414)
T ss_pred             HHhhcccccceec--cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccC
Confidence            4445665554221  2222222  2677777777776 3334455566777777777777652  123344556666666


Q ss_pred             CCccCCc---cCchhhhhhcCCCeeecccCcccccC
Q 035693          311 SNHFSDP---IPTLRLYMSRNLNYLNLSSNDLTGGI  343 (348)
Q Consensus       311 ~n~l~~~---~~~~~~~~~~~L~~L~l~~n~l~g~i  343 (348)
                      .+++...   .........+.+..+.+.+|.+....
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (414)
T KOG0531|consen  286 DNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS  321 (414)
T ss_pred             cchhcchhhhhccccccccccccccccccCcccccc
Confidence            6665421   11111122256666666666655433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.54  E-value=1.2e-08  Score=85.54  Aligned_cols=223  Identities=21%  Similarity=0.167  Sum_probs=101.1

Q ss_pred             ccCEEeCCCCCCCCCCCCC----CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhh
Q 035693           77 YLQSLNLGFTLFYGFPMPS----SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA  152 (348)
Q Consensus        77 ~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  152 (348)
                      -++.+.+.++.|...+...    .+..++++++.+|.++++    -.+...  +.++|.|+.|+++.|++...+...+  
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdW----seI~~i--le~lP~l~~LNls~N~L~s~I~~lp--  117 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDW----SEIGAI--LEQLPALTTLNLSCNSLSSDIKSLP--  117 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccH----HHHHHH--HhcCccceEeeccCCcCCCccccCc--
Confidence            3444445454444432221    555666666666655431    122222  5566666666666666554332110  


Q ss_pred             hCCCCCCcEEEccCccCCCc-chHHhhhccCCCEEEcccCCCCCCChh-hhhh-cCCCCCEEEccCCcCC--Cccccccc
Q 035693          153 MSFLPNLQVLNLSNCLLSDP-INHHLANLLSLSVIRLRDNHAVSCQVP-EFVA-NLLNLTTLDLSQCDLH--GKFPEKVL  227 (348)
Q Consensus       153 ~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~-~l~~L~~L~l~~~~~~--~~~~~~l~  227 (348)
                       .-..+|++|.+.+..+.-. ....+..+|++++|+++.|..-..... .... --+.++.+....|...  ........
T Consensus       118 -~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r  196 (418)
T KOG2982|consen  118 -LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR  196 (418)
T ss_pred             -ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh
Confidence             1234566666655544321 223344555666666655521100000 0000 0112333333333221  01111122


Q ss_pred             CCCCccEEEccCCCCCCCCC-CCCCCCCCCcEEEcccCCCCC-CCCccccCCCCCCEEeecCCccCCCCcc------ccc
Q 035693          228 QVPTLETLDLSYNSLLQGSL-PHFPKNSSLRNLNLKNTSFSG-KLPDSIGNLENLASVDVSSCNFTRPIPT------SMA  299 (348)
Q Consensus       228 ~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~ls~n~~~~-~~~~~l~~~~~L~~L~L~~n~l~~~~~~------~l~  299 (348)
                      .+|++..+.+..|++..... ..+..++.+--|+++.+++.+ +--+.+..++.|..|.++++++.+.+-.      .++
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa  276 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA  276 (418)
T ss_pred             hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence            34566666666665543322 233335555566666666642 1123455666777777777766642221      234


Q ss_pred             CCCCCCEEe
Q 035693          300 NLTQLFHLD  308 (348)
Q Consensus       300 ~~~~L~~L~  308 (348)
                      +++++++|+
T Consensus       277 RL~~v~vLN  285 (418)
T KOG2982|consen  277 RLTKVQVLN  285 (418)
T ss_pred             eccceEEec
Confidence            456666655

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.54  E-value=1.3e-08  Score=85.40  Aligned_cols=212  Identities=20%  Similarity=0.151  Sum_probs=134.6

Q ss_pred             CCcEEecCCCCCCCCcceeecCCCh-hhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHh
Q 035693           99 RLVTLDLSSREPISGFSWRLEIPNF-NFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHL  177 (348)
Q Consensus        99 ~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  177 (348)
                      -++-|.+.++.+.+..       +. .+-..++.+++++|.+|.+++.. ++..-+.++|.|+.|+++.|++...+...-
T Consensus        46 a~ellvln~~~id~~g-------d~~~~~~~~~~v~elDL~~N~iSdWs-eI~~ile~lP~l~~LNls~N~L~s~I~~lp  117 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEG-------DVMLFGSSVTDVKELDLTGNLISDWS-EIGAILEQLPALTTLNLSCNSLSSDIKSLP  117 (418)
T ss_pred             chhhheecCCCCCcch-------hHHHHHHHhhhhhhhhcccchhccHH-HHHHHHhcCccceEeeccCCcCCCccccCc
Confidence            3445666666553321       11 22457789999999999998765 344566889999999999998876433222


Q ss_pred             hhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCc--ccccccCC-CCccEEEccCCCCCCC-CCCCCCC-
Q 035693          178 ANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGK--FPEKVLQV-PTLETLDLSYNSLLQG-SLPHFPK-  252 (348)
Q Consensus       178 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~l~~~-~~L~~L~l~~~~l~~~-~~~~~~~-  252 (348)
                      ....+|+.|.+.+...........+..+|.+++|.++.|.....  -.+..... +.++++.+..|..... ..-.+.. 
T Consensus       118 ~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~  197 (418)
T KOG2982|consen  118 LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI  197 (418)
T ss_pred             ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh
Confidence            35568999999887444445566778888999999998844311  11112222 3566777766643111 1111222 


Q ss_pred             CCCCcEEEcccCCCCCCC-CccccCCCCCCEEeecCCccCCC-CcccccCCCCCCEEeCCCCccCCcc
Q 035693          253 NSSLRNLNLKNTSFSGKL-PDSIGNLENLASVDVSSCNFTRP-IPTSMANLTQLFHLDFSSNHFSDPI  318 (348)
Q Consensus       253 ~~~L~~L~ls~n~~~~~~-~~~l~~~~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~  318 (348)
                      ++++..+-+..|.+...- .+.....+.+.-|+|+.+.+.+. -...+.+++.|.-|.++++++.+.+
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            567777777777665321 22344556677888888888762 2245677888999999998887643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.52  E-value=1.4e-07  Score=78.42  Aligned_cols=241  Identities=17%  Similarity=0.166  Sum_probs=140.3

Q ss_pred             CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCc-------chhhhhhhCCCCCCcEEEccCcc
Q 035693           96 SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGR-------RTEWCKAMSFLPNLQVLNLSNCL  168 (348)
Q Consensus        96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------~~~~~~~~~~~~~L~~L~l~~~~  168 (348)
                      -+..++++++|+|.|.++-.-.+    ...+.+-.+|++.+++.--....       ...+...+..||.|+.++++.|.
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l----~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEEL----CNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHH----HHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            57778888888887653211000    03345556777777765322211       11233456678888888888888


Q ss_pred             CCCcchH----HhhhccCCCEEEcccCCCCCCC---hhhh---------hhcCCCCCEEEccCCcCCC----cccccccC
Q 035693          169 LSDPINH----HLANLLSLSVIRLRDNHAVSCQ---VPEF---------VANLLNLTTLDLSQCDLHG----KFPEKVLQ  228 (348)
Q Consensus       169 ~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~---~~~~---------l~~l~~L~~L~l~~~~~~~----~~~~~l~~  228 (348)
                      +....|.    .+++...|.+|.+++|......   +..+         ...-|.|++++...|++..    .....+..
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s  183 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES  183 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence            7765544    3455577888888887432211   1111         1234678888887777642    11112333


Q ss_pred             CCCccEEEccCCCCCCCCCCCC-----CCCCCCcEEEcccCCCCCC----CCccccCCCCCCEEeecCCccCCCCcccc-
Q 035693          229 VPTLETLDLSYNSLLQGSLPHF-----PKNSSLRNLNLKNTSFSGK----LPDSIGNLENLASVDVSSCNFTRPIPTSM-  298 (348)
Q Consensus       229 ~~~L~~L~l~~~~l~~~~~~~~-----~~~~~L~~L~ls~n~~~~~----~~~~l~~~~~L~~L~L~~n~l~~~~~~~l-  298 (348)
                      ...|+++.+..|.+...+...+     ..+.+|+.|++.+|.++..    +...++.++.|++|.+..|-+.......+ 
T Consensus       184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~  263 (388)
T COG5238         184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVL  263 (388)
T ss_pred             hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHH
Confidence            3577888888887655544332     2267888888888877632    22344556677888888887764222211 


Q ss_pred             -----cCCCCCCEEeCCCCccCCccCc------hhhhhhcCCCeeecccCccc
Q 035693          299 -----ANLTQLFHLDFSSNHFSDPIPT------LRLYMSRNLNYLNLSSNDLT  340 (348)
Q Consensus       299 -----~~~~~L~~L~l~~n~l~~~~~~------~~~~~~~~L~~L~l~~n~l~  340 (348)
                           ...|+|..|.+.+|.+.+.+..      .....+|-|..|.+.+|.++
T Consensus       264 ~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         264 RRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             HHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence                 2246778888877766543222      22333466667777777765

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.51  E-value=1.7e-07  Score=56.24  Aligned_cols=40  Identities=35%  Similarity=0.781  Sum_probs=30.7

Q ss_pred             hHHHHHHHHHhhhCccCCCCCCcccCCCCCCC--CCCccccceEeC
Q 035693            3 SDQKLLLIQMKNSFIFDVDSTPPAKMSQWSES--TDCCDWNGVDCD   46 (348)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~--~~~~~~~~~~c~   46 (348)
                      ..|+.+|++||.++..+|.    ..+.+|..+  .++|.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~----~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPS----GVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-----CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccC----cccccCCCcCCCCCeeeccEEeC
Confidence            5799999999999976554    789999997  899999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.46  E-value=3.3e-09  Score=98.72  Aligned_cols=127  Identities=28%  Similarity=0.380  Sum_probs=70.3

Q ss_pred             CCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCC-CCCCcEEE
Q 035693          182 SLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPK-NSSLRNLN  260 (348)
Q Consensus       182 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~  260 (348)
                      +|...+++.|...  .+...+.-++.++.|++++|++...  +.+..+++|++||++.|.+.  ..+.+.. -..|+.|+
T Consensus       165 ~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~--~vp~l~~~gc~L~~L~  238 (1096)
T KOG1859|consen  165 KLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR--HVPQLSMVGCKLQLLN  238 (1096)
T ss_pred             hHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc--cccccchhhhhheeee
Confidence            3444444444221  2344555566677777777776532  25566677777777777653  2333322 22377777


Q ss_pred             cccCCCCCCCCccccCCCCCCEEeecCCccCCC-CcccccCCCCCCEEeCCCCccCC
Q 035693          261 LKNTSFSGKLPDSIGNLENLASVDVSSCNFTRP-IPTSMANLTQLFHLDFSSNHFSD  316 (348)
Q Consensus       261 ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~  316 (348)
                      +.+|.++ .+. .+.++.+|+.|++++|-+.+. --..+..+..|+.|.|.+|++..
T Consensus       239 lrnN~l~-tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  239 LRNNALT-TLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             ecccHHH-hhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            7777665 222 345566777777777766641 01112334566777777777654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.43  E-value=2.1e-07  Score=92.24  Aligned_cols=83  Identities=29%  Similarity=0.266  Sum_probs=39.0

Q ss_pred             cccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchh
Q 035693           72 LFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTE  148 (348)
Q Consensus        72 l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  148 (348)
                      +..++.|+.||+++|.-.+. +|.   .+-+|++|++++..+.       .+|..  +.++..|.+|++..+......+ 
T Consensus       567 f~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-------~LP~~--l~~Lk~L~~Lnl~~~~~l~~~~-  635 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-------HLPSG--LGNLKKLIYLNLEVTGRLESIP-  635 (889)
T ss_pred             HhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-------ccchH--HHHHHhhheecccccccccccc-
Confidence            44555555555555322111 444   4555555555555432       34444  5555555555555544322221 


Q ss_pred             hhhhhCCCCCCcEEEccCc
Q 035693          149 WCKAMSFLPNLQVLNLSNC  167 (348)
Q Consensus       149 ~~~~~~~~~~L~~L~l~~~  167 (348)
                        .....+.+|++|.+...
T Consensus       636 --~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  636 --GILLELQSLRVLRLPRS  652 (889)
T ss_pred             --chhhhcccccEEEeecc
Confidence              22333555555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.21  E-value=5.1e-07  Score=87.34  Aligned_cols=90  Identities=27%  Similarity=0.285  Sum_probs=41.6

Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCC-cchHHhhhccCCCEEEcccCCCCCCC-hhh---
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSD-PINHHLANLLSLSVIRLRDNHAVSCQ-VPE---  200 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~---  200 (348)
                      ..++|+|..|++++++++..     ..+..+++|++|.+.+-.+.. .....+..+.+|+.||++........ +..   
T Consensus       169 c~sFpNL~sLDIS~TnI~nl-----~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYl  243 (699)
T KOG3665|consen  169 CASFPNLRSLDISGTNISNL-----SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYL  243 (699)
T ss_pred             hhccCccceeecCCCCccCc-----HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHH
Confidence            34555555555555555433     234555555555555444432 12234445555555555554322211 111   


Q ss_pred             -hhhcCCCCCEEEccCCcCCC
Q 035693          201 -FVANLLNLTTLDLSQCDLHG  220 (348)
Q Consensus       201 -~l~~l~~L~~L~l~~~~~~~  220 (348)
                       .-..+|+|+.||.+++.+..
T Consensus       244 ec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  244 ECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HhcccCccccEEecCCcchhH
Confidence             11134556666666555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.19  E-value=1.8e-08  Score=94.08  Aligned_cols=204  Identities=21%  Similarity=0.195  Sum_probs=102.8

Q ss_pred             ccCCCCCCcccCCCCCC-CCCCccccceEeC--CCCCEEEEeCCCCccccccc-cCCcccccccccCEEeCCCCCCCCCC
Q 035693           17 IFDVDSTPPAKMSQWSE-STDCCDWNGVDCD--EAGHVIGLDLSAEPILIGSL-ENASGLFSLQYLQSLNLGFTLFYGFP   92 (348)
Q Consensus        17 ~~~~~~~~~~~~~~w~~-~~~~~~~~~~~c~--~~~~l~~L~ls~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~   92 (348)
                      ...++|.|..++..... ..|...+.+..--  -....+.|.+-+.| -.+.. |.  .|..|..|+.|.++++.+....
T Consensus        49 ~lg~~g~~~~~f~a~~s~~ads~vl~qLq~i~d~lqkt~~lkl~~~p-a~~pt~pi--~ifpF~sLr~LElrg~~L~~~~  125 (1096)
T KOG1859|consen   49 ELGLSGAPVDYFRAYVSDNADSRVLEQLQRILDFLQKTKVLKLLPSP-ARDPTEPI--SIFPFRSLRVLELRGCDLSTAK  125 (1096)
T ss_pred             hhccCCCCCceeEEecCCcccchHHHHHHHHHHHHhhheeeeecccC-CCCCCCCc--eeccccceeeEEecCcchhhhh
Confidence            34566666666666554 4444444432211  11234444444431 11222 44  6788899999999888776531


Q ss_pred             -CCC--------------------------------CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccC
Q 035693           93 -MPS--------------------------------SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDN  139 (348)
Q Consensus        93 -~~~--------------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  139 (348)
                       +..                                ..-.|...++++|.+.        .. ...++-++.|+.|+|++
T Consensus       126 GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~--------~m-D~SLqll~ale~LnLsh  196 (1096)
T KOG1859|consen  126 GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV--------LM-DESLQLLPALESLNLSH  196 (1096)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH--------hH-HHHHHHHHHhhhhccch
Confidence             111                                1112333333443321        00 02245556666666666


Q ss_pred             cCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchH-HhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcC
Q 035693          140 VDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINH-HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDL  218 (348)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  218 (348)
                      |++....     .+..++.|+.|+|++|.+.. +|. ....+ +|..|.+++|.. +  -...+.++.+|+.||+++|-+
T Consensus       197 Nk~~~v~-----~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~lrnN~l-~--tL~gie~LksL~~LDlsyNll  266 (1096)
T KOG1859|consen  197 NKFTKVD-----NLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLNLRNNAL-T--TLRGIENLKSLYGLDLSYNLL  266 (1096)
T ss_pred             hhhhhhH-----HHHhcccccccccccchhcc-ccccchhhh-hheeeeecccHH-H--hhhhHHhhhhhhccchhHhhh
Confidence            6665432     35566666666666666654 222 22222 366666666622 1  223445566666666666665


Q ss_pred             CC-cccccccCCCCccEEEccCCCC
Q 035693          219 HG-KFPEKVLQVPTLETLDLSYNSL  242 (348)
Q Consensus       219 ~~-~~~~~l~~~~~L~~L~l~~~~l  242 (348)
                      .+ .--+.+..+..|+.|.+.+|++
T Consensus       267 ~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  267 SEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hcchhhhHHHHHHHHHHHhhcCCcc
Confidence            42 1112234455666666666654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.08  E-value=1.7e-06  Score=83.87  Aligned_cols=108  Identities=21%  Similarity=0.296  Sum_probs=44.9

Q ss_pred             cCCCEEEcccCCCCCCChhhhhh-cCCCCCEEEccCCcCCC-cccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcE
Q 035693          181 LSLSVIRLRDNHAVSCQVPEFVA-NLLNLTTLDLSQCDLHG-KFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRN  258 (348)
Q Consensus       181 ~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~  258 (348)
                      .+|++|++++........+..++ .+|+|+.|.+++-.+.. ++.....++|+|..||++++++.  .+..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~--nl~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS--NLSGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc--CcHHHhccccHHH
Confidence            34555555554333333333333 24455555555444321 22223334455555555554432  2223333444444


Q ss_pred             EEcccCCCCC-CCCccccCCCCCCEEeecCCcc
Q 035693          259 LNLKNTSFSG-KLPDSIGNLENLASVDVSSCNF  290 (348)
Q Consensus       259 L~ls~n~~~~-~~~~~l~~~~~L~~L~L~~n~l  290 (348)
                      |.+.+-.+.. ..-..+..+++|+.||+|....
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence            4444433321 0111233445555555554433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.93  E-value=3.1e-07  Score=68.46  Aligned_cols=133  Identities=23%  Similarity=0.276  Sum_probs=85.3

Q ss_pred             CCCEEEccCCcCCCccccc---ccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEE
Q 035693          207 NLTTLDLSQCDLHGKFPEK---VLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASV  283 (348)
Q Consensus       207 ~L~~L~l~~~~~~~~~~~~---l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L  283 (348)
                      .+..++++.|.+. .+++.   +.....|..+++++|.+..........++.++.|++++|.+. .+|+.+..++.|+.|
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            3556777777765 33333   334456667788888764333333334667888888888887 677778888888888


Q ss_pred             eecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCC
Q 035693          284 DVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGIS  344 (348)
Q Consensus       284 ~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip  344 (348)
                      +++.|.+.. .|+.+..+.++..|+.-+|.+.. ++...+.. ...-..++.++.+.|+=|
T Consensus       106 Nl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s-~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  106 NLRFNPLNA-EPRVIAPLIKLDMLDSPENARAE-IDVDLFYS-SLPALIKLGNEPLGDETK  163 (177)
T ss_pred             ccccCcccc-chHHHHHHHhHHHhcCCCCcccc-CcHHHhcc-ccHHHHHhcCCcccccCc
Confidence            888888876 56666667778888888877754 55543321 222233455556665543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.89  E-value=1.7e-05  Score=47.60  Aligned_cols=37  Identities=38%  Similarity=0.599  Sum_probs=19.0

Q ss_pred             CCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCC
Q 035693          279 NLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSD  316 (348)
Q Consensus       279 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~  316 (348)
                      +|++|++++|++.+ ++..++++++|+.|++++|++++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence            45555555555554 34445555555555555555543

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.89  E-value=2.1e-05  Score=62.79  Aligned_cols=89  Identities=26%  Similarity=0.303  Sum_probs=43.4

Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCc-chHHhhhccCCCEEEcccCCCCCCC--hhhhh
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDP-INHHLANLLSLSVIRLRDNHAVSCQ--VPEFV  202 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~l  202 (348)
                      +..++.|..|.+.+|+++.+.+.+   -..+++|+.|.+.+|++... ....+..+++|++|.+-+|+.....  -.-.+
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L---~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl  136 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDL---DTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVL  136 (233)
T ss_pred             CCCccccceEEecCCcceeeccch---hhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEE
Confidence            444555555566666555554422   12245555666666555431 1123445556666666655332211  11234


Q ss_pred             hcCCCCCEEEccCCc
Q 035693          203 ANLLNLTTLDLSQCD  217 (348)
Q Consensus       203 ~~l~~L~~L~l~~~~  217 (348)
                      ..+|+|+.||+..-.
T Consensus       137 ~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  137 YKLPSLRTLDFQKVT  151 (233)
T ss_pred             EecCcceEeehhhhh
Confidence            455666666665443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.88  E-value=5.5e-07  Score=67.18  Aligned_cols=136  Identities=21%  Similarity=0.285  Sum_probs=88.4

Q ss_pred             cCCCEEEcccCCCCC-CChhhhhhcCCCCCEEEccCCcCCCcccccc-cCCCCccEEEccCCCCCCCCCCCCCCCCCCcE
Q 035693          181 LSLSVIRLRDNHAVS-CQVPEFVANLLNLTTLDLSQCDLHGKFPEKV-LQVPTLETLDLSYNSLLQGSLPHFPKNSSLRN  258 (348)
Q Consensus       181 ~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~  258 (348)
                      ..+..++|+.|+... ......+....+|...++++|.+. .+|+.| ..++.++.|++++|.+.+.... +..++.|+.
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~  104 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRS  104 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhh
Confidence            356677787775431 112233445556777788888887 455544 3456888888888886544444 777888888


Q ss_pred             EEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCc
Q 035693          259 LNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPT  320 (348)
Q Consensus       259 L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~  320 (348)
                      |++..|.+. ..|..+..+.++..|+..+|.... ++..+-..+..-...++++++.+..+.
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhcCCcccccCcc
Confidence            888888887 556666667788888888887766 443343334445555677777664443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.80  E-value=4.6e-05  Score=60.94  Aligned_cols=107  Identities=21%  Similarity=0.196  Sum_probs=77.4

Q ss_pred             CCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCC
Q 035693          130 TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLT  209 (348)
Q Consensus       130 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  209 (348)
                      .+...+++++|++....     .+..++.|.+|.++.|.|+.+.|..-..+++|+.|.+.+|.+....-...+..+|.|+
T Consensus        42 d~~d~iDLtdNdl~~l~-----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD-----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE  116 (233)
T ss_pred             cccceecccccchhhcc-----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence            35677888888775433     3677788999999999998877766667788999999988654433344567788888


Q ss_pred             EEEccCCcCCCc---ccccccCCCCccEEEccCCC
Q 035693          210 TLDLSQCDLHGK---FPEKVLQVPTLETLDLSYNS  241 (348)
Q Consensus       210 ~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~~  241 (348)
                      +|.+-+|.....   -...+..+|+|+.||+++-.
T Consensus       117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            888888877531   22356677888888887643

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.75  E-value=3.5e-05  Score=46.29  Aligned_cols=38  Identities=29%  Similarity=0.557  Sum_probs=30.7

Q ss_pred             CCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCC
Q 035693          254 SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR  292 (348)
Q Consensus       254 ~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~  292 (348)
                      ++|++|++++|+++ .++..++.+++|+.|++++|++++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            46889999999998 677678889999999999999886

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.73  E-value=0.00031  Score=63.34  Aligned_cols=139  Identities=17%  Similarity=0.278  Sum_probs=77.0

Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL  205 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l  205 (348)
                      +..|.+++.|++++|.+...+ .      -..+|++|++++|.-...+|..+  .++|+.|.+++|.... .+|      
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP-~------LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------  111 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP-V------LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------  111 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC-C------CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------
Confidence            455778888888888665443 1      12358888887765434455443  2578888888773222 111      


Q ss_pred             CCCCEEEccCCcCCCcccccccCC-CCccEEEccCCCC-CCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEE
Q 035693          206 LNLTTLDLSQCDLHGKFPEKVLQV-PTLETLDLSYNSL-LQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASV  283 (348)
Q Consensus       206 ~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l-~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L  283 (348)
                      ..|+.|++.++... .    +..+ +.|+.|.+.+++. .....+.. -.++|++|++++|... ..|..+.  .+|+.|
T Consensus       112 ~sLe~L~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~-LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L  182 (426)
T PRK15386        112 ESVRSLEIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDNL-ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSI  182 (426)
T ss_pred             cccceEEeCCCCCc-c----cccCcchHhheeccccccccccccccc-cCCcccEEEecCCCcc-cCccccc--ccCcEE
Confidence            25677777655432 1    1222 2466777644321 11111110 1257888888887755 4444433  477888


Q ss_pred             eecCCc
Q 035693          284 DVSSCN  289 (348)
Q Consensus       284 ~L~~n~  289 (348)
                      .++.+.
T Consensus       183 ~ls~n~  188 (426)
T PRK15386        183 TLHIEQ  188 (426)
T ss_pred             Eecccc
Confidence            877653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.68  E-value=2.4e-05  Score=64.98  Aligned_cols=130  Identities=21%  Similarity=0.141  Sum_probs=71.0

Q ss_pred             EEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCC
Q 035693           51 VIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLT  130 (348)
Q Consensus        51 l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~  130 (348)
                      ++.+.+..+....+.+..  ..-.+..|+.+.+.+..++...-...+++|++|.++.|.+..    ...+...  ...+|
T Consensus        20 v~~l~lD~~~s~~g~~~g--l~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~----~~~l~vl--~e~~P   91 (260)
T KOG2739|consen   20 VDELFLDNARSGAGKLGG--LTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRV----SGGLEVL--AEKAP   91 (260)
T ss_pred             hhhhhcchhhhcCCCccc--ccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccc----cccceeh--hhhCC
Confidence            444444444222333332  344566667666666666554333377788888888774321    2222222  45567


Q ss_pred             CCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCc---chHHhhhccCCCEEEccc
Q 035693          131 ELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDP---INHHLANLLSLSVIRLRD  190 (348)
Q Consensus       131 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~  190 (348)
                      +|+++++++|++..  ......+..+.+|.+|++..|..+..   --..+.-+++|++|+-..
T Consensus        92 ~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen   92 NLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             ceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            77777777777764  22224455666677777777655432   113344456666665544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.64  E-value=3e-05  Score=73.04  Aligned_cols=13  Identities=23%  Similarity=0.314  Sum_probs=7.3

Q ss_pred             CCCCcEEEcccCC
Q 035693          253 NSSLRNLNLKNTS  265 (348)
Q Consensus       253 ~~~L~~L~ls~n~  265 (348)
                      ++.++.+.+..+.
T Consensus       361 ~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  361 CPKLTDLSLSYCG  373 (482)
T ss_pred             CCCcchhhhhhhh
Confidence            5555555555554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.64  E-value=0.00043  Score=62.47  Aligned_cols=135  Identities=19%  Similarity=0.264  Sum_probs=79.8

Q ss_pred             CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCc-cCCCcch
Q 035693           96 SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNC-LLSDPIN  174 (348)
Q Consensus        96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~  174 (348)
                      .++++++|++++|.++       .+|..     .++|++|.+++|.-....+   ..+  ..+|++|++++| .+.. +|
T Consensus        50 ~~~~l~~L~Is~c~L~-------sLP~L-----P~sLtsL~Lsnc~nLtsLP---~~L--P~nLe~L~Ls~Cs~L~s-LP  111 (426)
T PRK15386         50 EARASGRLYIKDCDIE-------SLPVL-----PNELTEITIENCNNLTTLP---GSI--PEGLEKLTVCHCPEISG-LP  111 (426)
T ss_pred             HhcCCCEEEeCCCCCc-------ccCCC-----CCCCcEEEccCCCCcccCC---chh--hhhhhheEccCcccccc-cc
Confidence            5789999999998754       22321     2369999998865322222   122  257999999988 4432 33


Q ss_pred             HHhhhccCCCEEEcccCCCCCCChhhhhhcCC-CCCEEEccCCcCCC--cccccccCCCCccEEEccCCCCCCCCCCCCC
Q 035693          175 HHLANLLSLSVIRLRDNHAVSCQVPEFVANLL-NLTTLDLSQCDLHG--KFPEKVLQVPTLETLDLSYNSLLQGSLPHFP  251 (348)
Q Consensus       175 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~  251 (348)
                            ..|+.|++..+...      .+..+| +|+.|.+.++....  ..+..  -.++|+.|++.+|... ..++.+.
T Consensus       112 ------~sLe~L~L~~n~~~------~L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP  176 (426)
T PRK15386        112 ------ESVRSLEIKGSATD------SIKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP  176 (426)
T ss_pred             ------cccceEEeCCCCCc------ccccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc
Confidence                  46788888754221      123333 57777775433111  11111  1257999999988743 2222233


Q ss_pred             CCCCCcEEEcccCC
Q 035693          252 KNSSLRNLNLKNTS  265 (348)
Q Consensus       252 ~~~~L~~L~ls~n~  265 (348)
                        .+|+.|.++.+.
T Consensus       177 --~SLk~L~ls~n~  188 (426)
T PRK15386        177 --ESLQSITLHIEQ  188 (426)
T ss_pred             --ccCcEEEecccc
Confidence              589999987763

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.43  E-value=9.8e-05  Score=61.45  Aligned_cols=105  Identities=23%  Similarity=0.300  Sum_probs=56.0

Q ss_pred             CCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccC--CCCCCCCccccCCCCCCEEeecCCccCC-CCcccccCCCCCC
Q 035693          229 VPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNT--SFSGKLPDSIGNLENLASVDVSSCNFTR-PIPTSMANLTQLF  305 (348)
Q Consensus       229 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n--~~~~~~~~~l~~~~~L~~L~L~~n~l~~-~~~~~l~~~~~L~  305 (348)
                      +..|+.+++.+..+  .....+..+++|++|.++.|  .+.+.++.-...+++|+++++++|++.. ..-..+..+.+|.
T Consensus        42 ~~~le~ls~~n~gl--tt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGL--TTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccce--eecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            34455555554433  23344444556666666666  4443343333344677777777777663 1112234556677


Q ss_pred             EEeCCCCccCCc--cCchhhhhhcCCCeeecc
Q 035693          306 HLDFSSNHFSDP--IPTLRLYMSRNLNYLNLS  335 (348)
Q Consensus       306 ~L~l~~n~l~~~--~~~~~~~~~~~L~~L~l~  335 (348)
                      .|++.+|..+..  --..++..+++|++||--
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            777777766541  111244455777776643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.28  E-value=1.7e-05  Score=66.50  Aligned_cols=86  Identities=23%  Similarity=0.263  Sum_probs=47.1

Q ss_pred             EeCCCCCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCCh
Q 035693           44 DCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNF  123 (348)
Q Consensus        44 ~c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  123 (348)
                      +|+...+++.|++-|| .+.+ +   ..+.+|+.|++|.|+-|.|+...-...|.+|++|+|..|.+.+       +...
T Consensus        14 K~sdl~~vkKLNcwg~-~L~D-I---sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~s-------ldEL   81 (388)
T KOG2123|consen   14 KCSDLENVKKLNCWGC-GLDD-I---SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIES-------LDEL   81 (388)
T ss_pred             HhhHHHHhhhhcccCC-CccH-H---HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhccccc-------HHHH
Confidence            3444456777777777 4432 1   1456777777777777777665222256666666666554321       1122


Q ss_pred             hhhcCCCCCcEEEccCcC
Q 035693          124 NFFQNLTELRELYLDNVD  141 (348)
Q Consensus       124 ~~~~~l~~L~~L~l~~~~  141 (348)
                      ..+.++|.|+.|.|..|.
T Consensus        82 ~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   82 EYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             HHHhcCchhhhHhhccCC
Confidence            334555555555555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=2.7e-05  Score=65.28  Aligned_cols=101  Identities=21%  Similarity=0.165  Sum_probs=62.6

Q ss_pred             CCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcc-hH
Q 035693           97 LPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPI-NH  175 (348)
Q Consensus        97 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~  175 (348)
                      +.+.++|++-+|.+.          +.+...+++.|++|.|+-|.++...     .+..|..|++|+|..|.|.+.. ..
T Consensus        18 l~~vkKLNcwg~~L~----------DIsic~kMp~lEVLsLSvNkIssL~-----pl~rCtrLkElYLRkN~I~sldEL~   82 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD----------DISICEKMPLLEVLSLSVNKISSLA-----PLQRCTRLKELYLRKNCIESLDELE   82 (388)
T ss_pred             HHHhhhhcccCCCcc----------HHHHHHhcccceeEEeeccccccch-----hHHHHHHHHHHHHHhcccccHHHHH
Confidence            445667777766542          2233677778888888888776543     4667778888888888776531 23


Q ss_pred             HhhhccCCCEEEcccCCCCCCC----hhhhhhcCCCCCEEE
Q 035693          176 HLANLLSLSVIRLRDNHAVSCQ----VPEFVANLLNLTTLD  212 (348)
Q Consensus       176 ~~~~~~~L~~L~l~~~~~~~~~----~~~~l~~l~~L~~L~  212 (348)
                      -+.++++|+.|.|..|+=-...    -...+.-+|+|+.|+
T Consensus        83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            4567777888877776321111    112355666776665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.95  E-value=0.0035  Score=47.50  Aligned_cols=105  Identities=19%  Similarity=0.256  Sum_probs=35.0

Q ss_pred             hhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCC
Q 035693          202 VANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLA  281 (348)
Q Consensus       202 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~  281 (348)
                      |.++.+|+.+.+.. .+.......+..+++|+.+.+..+ +.......|..+++++.+.+.. .+.......+..+++|+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            33444444444442 222122223444444555555443 3333333444444455555533 22211122334445555


Q ss_pred             EEeecCCccCCCCcccccCCCCCCEEeCCC
Q 035693          282 SVDVSSCNFTRPIPTSMANLTQLFHLDFSS  311 (348)
Q Consensus       282 ~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~  311 (348)
                      .+.+..+ +.......+.+. .|+.+.+..
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            5555433 332222333333 555555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.84  E-value=0.0035  Score=47.46  Aligned_cols=10  Identities=20%  Similarity=0.567  Sum_probs=4.1

Q ss_pred             CCCccEEEcc
Q 035693          229 VPTLETLDLS  238 (348)
Q Consensus       229 ~~~L~~L~l~  238 (348)
                      +++|+.+.+.
T Consensus        80 ~~~l~~i~~~   89 (129)
T PF13306_consen   80 CTNLKNIDIP   89 (129)
T ss_dssp             -TTECEEEET
T ss_pred             cccccccccC
Confidence            4444444443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.78  E-value=0.00016  Score=68.20  Aligned_cols=32  Identities=28%  Similarity=0.181  Sum_probs=19.4

Q ss_pred             ccCCCCCCEEeCCCCccCCccCchhhhhhcCC
Q 035693          298 MANLTQLFHLDFSSNHFSDPIPTLRLYMSRNL  329 (348)
Q Consensus       298 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L  329 (348)
                      ...+++++.+.+..+...+..-.....+|+.|
T Consensus       358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             HhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            35677888888888874443223445555555

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.21  E-value=0.0019  Score=32.28  Aligned_cols=19  Identities=58%  Similarity=0.889  Sum_probs=15.2

Q ss_pred             CCCeeecccCcccccCCCCC
Q 035693          328 NLNYLNLSSNDLTGGISSNI  347 (348)
Q Consensus       328 ~L~~L~l~~n~l~g~ip~~~  347 (348)
                      +|++|||++|+++ +||.+|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             TESEEEETSSEES-EEGTTT
T ss_pred             CccEEECCCCcCE-eCChhh
Confidence            4788888888888 888764

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.79  E-value=0.00012  Score=68.19  Aligned_cols=187  Identities=28%  Similarity=0.293  Sum_probs=94.1

Q ss_pred             CcEEEccCcCCCCcchh-hhhhhCCCCCCcEEEccCccCCCcch----HHhhhc-cCCCEEEcccCCCCCC---Chhhhh
Q 035693          132 LRELYLDNVDLSGRRTE-WCKAMSFLPNLQVLNLSNCLLSDPIN----HHLANL-LSLSVIRLRDNHAVSC---QVPEFV  202 (348)
Q Consensus       132 L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~---~~~~~l  202 (348)
                      +..+.+.+|.+.+.... +...+...+.|+.|++++|.+.+.-.    ..+... +.+++|.+..|.....   .+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            44444444444433222 22233444555555555555543211    111121 3344455544422211   123334


Q ss_pred             hcCCCCCEEEccCCcCCC----ccccc----ccCCCCccEEEccCCCCCCCCCC----CCCCCCC-CcEEEcccCCCCCC
Q 035693          203 ANLLNLTTLDLSQCDLHG----KFPEK----VLQVPTLETLDLSYNSLLQGSLP----HFPKNSS-LRNLNLKNTSFSGK  269 (348)
Q Consensus       203 ~~l~~L~~L~l~~~~~~~----~~~~~----l~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~-L~~L~ls~n~~~~~  269 (348)
                      .....++++++..|.+..    ..+..    +....++++|.+.+|.++.....    .+...+. +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            444556666666555421    12222    22456788888888766433222    1222333 56688888876532


Q ss_pred             ----CCccccCC-CCCCEEeecCCccCC----CCcccccCCCCCCEEeCCCCccCCcc
Q 035693          270 ----LPDSIGNL-ENLASVDVSSCNFTR----PIPTSMANLTQLFHLDFSSNHFSDPI  318 (348)
Q Consensus       270 ----~~~~l~~~-~~L~~L~L~~n~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~~  318 (348)
                          ....+... ..++++++..|.+.+    .+...+..++.++.+.+.+|++.+..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~  306 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG  306 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence                12223333 567888888888875    33444555678888888888887643

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.17  E-value=0.012  Score=27.24  Aligned_cols=16  Identities=50%  Similarity=0.690  Sum_probs=7.4

Q ss_pred             CCCeeecccCcccccCC
Q 035693          328 NLNYLNLSSNDLTGGIS  344 (348)
Q Consensus       328 ~L~~L~l~~n~l~g~ip  344 (348)
                      +|+.|+|++|+++ ++|
T Consensus         2 ~L~~L~l~~n~L~-~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLT-SLP   17 (17)
T ss_dssp             T-SEEEETSS--S-SE-
T ss_pred             ccCEEECCCCCCC-CCc
Confidence            5666666666665 444

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.17  E-value=0.00092  Score=62.33  Aligned_cols=188  Identities=26%  Similarity=0.210  Sum_probs=101.0

Q ss_pred             EEEEeCCCCccccccccC--CcccccccccCEEeCCCCCCCCCCCCC------CC-CCCcEEecCCCCCCCCcceeecCC
Q 035693           51 VIGLDLSAEPILIGSLEN--ASGLFSLQYLQSLNLGFTLFYGFPMPS------SL-PRLVTLDLSSREPISGFSWRLEIP  121 (348)
Q Consensus        51 l~~L~ls~~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~------~~-~~L~~L~l~~~~~~~~~~~~~~~~  121 (348)
                      +..+.|.+| .+......  ...+...+.|+.|++++|.+.+.+...      .. +.|+.|++..|.++..    +.-+
T Consensus        89 l~~L~L~~~-~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~----g~~~  163 (478)
T KOG4308|consen   89 LLHLSLANN-RLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSE----GAAP  163 (478)
T ss_pred             HHHhhhhhC-ccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccccc----chHH
Confidence            455666666 33221111  013445677777777777776543222      22 4566677777765432    1112


Q ss_pred             ChhhhcCCCCCcEEEccCcCCCCcchh-hhhhhC----CCCCCcEEEccCccCCCc----chHHhhhccC-CCEEEcccC
Q 035693          122 NFNFFQNLTELRELYLDNVDLSGRRTE-WCKAMS----FLPNLQVLNLSNCLLSDP----INHHLANLLS-LSVIRLRDN  191 (348)
Q Consensus       122 ~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~~  191 (348)
                      -.+.+.....+++++++.|.+...... ....+.    ...++++|.+.+|.++..    +...+...++ +..|++..|
T Consensus       164 l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n  243 (478)
T KOG4308|consen  164 LAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN  243 (478)
T ss_pred             HHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc
Confidence            223455577778888877776432221 112222    356677788877776643    2223333444 666777777


Q ss_pred             CCCCCCh---hhhhhcC-CCCCEEEccCCcCCC----cccccccCCCCccEEEccCCCCC
Q 035693          192 HAVSCQV---PEFVANL-LNLTTLDLSQCDLHG----KFPEKVLQVPTLETLDLSYNSLL  243 (348)
Q Consensus       192 ~~~~~~~---~~~l~~l-~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~l~  243 (348)
                      .......   ...+..+ ..++++++..|.+..    .+.+.+..++.++.+.+..|.+.
T Consensus       244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  244 KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            4433211   2223333 456777777777764    33344555667777777777653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.48  E-value=0.045  Score=28.38  Aligned_cols=19  Identities=37%  Similarity=0.569  Sum_probs=12.1

Q ss_pred             cCCCeeecccCcccccCCCC
Q 035693          327 RNLNYLNLSSNDLTGGISSN  346 (348)
Q Consensus       327 ~~L~~L~l~~n~l~g~ip~~  346 (348)
                      ++|++|+|++|+|+ .||.+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            45667777777765 66654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.48  E-value=0.045  Score=28.38  Aligned_cols=19  Identities=37%  Similarity=0.569  Sum_probs=12.1

Q ss_pred             cCCCeeecccCcccccCCCC
Q 035693          327 RNLNYLNLSSNDLTGGISSN  346 (348)
Q Consensus       327 ~~L~~L~l~~n~l~g~ip~~  346 (348)
                      ++|++|+|++|+|+ .||.+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            45667777777765 66654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.77  E-value=0.034  Score=44.89  Aligned_cols=82  Identities=18%  Similarity=0.181  Sum_probs=39.1

Q ss_pred             CCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcch-HHh-hhccCCCEEEcccCCCCCCChhhhhhcCCCC
Q 035693          131 ELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPIN-HHL-ANLLSLSVIRLRDNHAVSCQVPEFVANLLNL  208 (348)
Q Consensus       131 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L  208 (348)
                      .++.++-+++.+....-   ..+.+++.++.|.+..|.--+... .-+ .-.++|+.|++++|+.++......+..+++|
T Consensus       102 ~IeaVDAsds~I~~eGl---e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL  178 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGL---EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL  178 (221)
T ss_pred             eEEEEecCCchHHHHHH---HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence            34455555555443322   344555555555555554322100 111 1235566666666655555555555555555


Q ss_pred             CEEEccC
Q 035693          209 TTLDLSQ  215 (348)
Q Consensus       209 ~~L~l~~  215 (348)
                      +.|.+.+
T Consensus       179 r~L~l~~  185 (221)
T KOG3864|consen  179 RRLHLYD  185 (221)
T ss_pred             HHHHhcC
Confidence            5555543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.42  E-value=0.044  Score=44.24  Aligned_cols=81  Identities=21%  Similarity=0.219  Sum_probs=44.0

Q ss_pred             CcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhc-CCCCCEEEccCCc-CCCcccccccCCCCccEEE
Q 035693          159 LQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVAN-LLNLTTLDLSQCD-LHGKFPEKVLQVPTLETLD  236 (348)
Q Consensus       159 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~  236 (348)
                      ++.++-+++.|...-.+.+..++.++.|.+.+|..+.+.....+++ .++|+.|++++|. +++.....+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            5556666666655555666667777777777775554433333333 2356666666553 2322223344455555555


Q ss_pred             ccC
Q 035693          237 LSY  239 (348)
Q Consensus       237 l~~  239 (348)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            543

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=90.68  E-value=0.16  Score=26.25  Aligned_cols=18  Identities=39%  Similarity=0.553  Sum_probs=14.4

Q ss_pred             cCCCeeecccCcccccCCC
Q 035693          327 RNLNYLNLSSNDLTGGISS  345 (348)
Q Consensus       327 ~~L~~L~l~~n~l~g~ip~  345 (348)
                      ++|+.|++++|+++ ++|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            56888888888887 7776

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=87.29  E-value=0.28  Score=24.71  Aligned_cols=12  Identities=33%  Similarity=0.451  Sum_probs=4.3

Q ss_pred             CCcEEEccCcCC
Q 035693          131 ELRELYLDNVDL  142 (348)
Q Consensus       131 ~L~~L~l~~~~~  142 (348)
                      +|++|+|++|++
T Consensus         3 ~L~~L~l~~n~i   14 (24)
T PF13516_consen    3 NLETLDLSNNQI   14 (24)
T ss_dssp             T-SEEE-TSSBE
T ss_pred             CCCEEEccCCcC
Confidence            344444444443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	348
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-10
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-07
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-10
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-07
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-08

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 117/255 (45%), Gaps = 43/255 (16%)
Query: 72  LFSLQYLQSLNLGFTLFYGFPMPSSL----PRLVTLDLSSREPISGFSWRLEIPNFNFFQ 127
           L  ++ L+ L+L F  F G  +P SL      L+TLDLSS      FS  + +PN    Q
Sbjct: 339 LLKMRGLKVLDLSFNEFSG-ELPESLTNLSASLLTLDLSSNN----FSGPI-LPNL--CQ 390
Query: 128 N-LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVI 186
           N    L+ELYL N   +G+                  LSNC  S+ ++ HL+        
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPP--------------TLSNC--SELVSLHLSF------- 427
Query: 187 RLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGS 246
                + +S  +P  + +L  L  L L    L G+ P++++ V TLETL L +N L  G 
Sbjct: 428 -----NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL-TGE 481
Query: 247 LPH-FPXXXXXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLF 305
           +P                   +G++P  IG LENLA + +S+ +F+  IP  + +   L 
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541
Query: 306 HLDFSSNHFSDPIPT 320
            LD ++N F+  IP 
Sbjct: 542 WLDLNTNLFNGTIPA 556

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 82/239 (34%)
Query: 137 LDNVDLSGRR--TEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAV 194
           L ++D+SG +   ++ +A+S    L++LN+S+     PI      L SL  + L +N   
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK-F 281
Query: 195 SCQVPEFVANLLN-LTTLDLSQCDLHGKFP-------------------------EKVLQ 228
           + ++P+F++   + LT LDLS    +G  P                         + +L+
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341
Query: 229 VPTLETLDLSYNSLLQGSLPHFPXXXXXXXXXXXXTSFSGKLPDSIGNLE-NLASVDVSS 287
           +  L+ LDLS+N                         FSG+LP+S+ NL  +L ++D+SS
Sbjct: 342 MRGLKVLDLSFNE------------------------FSGELPESLTNLSASLLTLDLSS 377
Query: 288 CNFTRPI--------------------------PTSMANLTQLFHLDFSSNHFSDPIPT 320
            NF+ PI                          P +++N ++L  L  S N+ S  IP+
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 119/255 (46%), Gaps = 43/255 (16%)
Query: 72  LFSLQYLQSLNLGFTLFYGFPMPSSL----PRLVTLDLSSREPISGFSWRLEIPNFNFFQ 127
           L  ++ L+ L+L F  F G  +P SL      L+TLDLSS      FS  + +PN    Q
Sbjct: 336 LLKMRGLKVLDLSFNEFSG-ELPESLTNLSASLLTLDLSSNN----FSGPI-LPNL--CQ 387
Query: 128 N-LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVI 186
           N    L+ELYL N   +G+          +P      LSNC  S+ ++ HL+        
Sbjct: 388 NPKNTLQELYLQNNGFTGK----------IPP----TLSNC--SELVSLHLSF------- 424
Query: 187 RLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGS 246
                + +S  +P  + +L  L  L L    L G+ P++++ V TLETL L +N L  G 
Sbjct: 425 -----NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL-TGE 478
Query: 247 LPH-FPXXXXXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLF 305
           +P                   +G++P  IG LENLA + +S+ +F+  IP  + +   L 
Sbjct: 479 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 538
Query: 306 HLDFSSNHFSDPIPT 320
            LD ++N F+  IP 
Sbjct: 539 WLDLNTNLFNGTIPA 553

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 82/239 (34%)
Query: 137 LDNVDLSGRR--TEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAV 194
           L ++D+SG +   ++ +A+S    L++LN+S+     PI      L SL  + L +N   
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK-F 278
Query: 195 SCQVPEFVANLLN-LTTLDLSQCDLHGKFP-------------------------EKVLQ 228
           + ++P+F++   + LT LDLS    +G  P                         + +L+
Sbjct: 279 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 338
Query: 229 VPTLETLDLSYNSLLQGSLPHFPXXXXXXXXXXXXTSFSGKLPDSIGNLE-NLASVDVSS 287
           +  L+ LDLS+N                         FSG+LP+S+ NL  +L ++D+SS
Sbjct: 339 MRGLKVLDLSFNE------------------------FSGELPESLTNLSASLLTLDLSS 374
Query: 288 CNFTRPI--------------------------PTSMANLTQLFHLDFSSNHFSDPIPT 320
            NF+ PI                          P +++N ++L  L  S N+ S  IP+
Sbjct: 375 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 130/325 (40%), Gaps = 48/325 (14%)
Query: 1   CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCD--WNGVDCD---EAGHVIGLD 55
           C    K  L+Q+K       D   P  +S W  +TDCC+  W GV CD   +   V  LD
Sbjct: 3   CNPQDKQALLQIKK------DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLD 56
Query: 56  LSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFS 115
           LS                          G  L   +P+PSSL  L  L+      I G +
Sbjct: 57  LS--------------------------GLNLPKPYPIPSSLANLPYLNFLY---IGGIN 87
Query: 116 WRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINH 175
             L  P       LT+L  LY+ + ++SG   ++   +S +  L  L+ S   LS  +  
Sbjct: 88  -NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF---LSQIKTLVTLDFSYNALSGTLPP 143
Query: 176 HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNL-TTLDLSQCDLHGKFPEKVLQVPTLET 234
            +++L +L  I   D + +S  +P+   +   L T++ +S+  L GK P     +  L  
Sbjct: 144 SISSLPNLVGITF-DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAF 201
Query: 235 LDLSYNSLLQGSLPHFPXXXXXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSCNFTRPI 294
           +DLS N L   +   F              S +  L   +G  +NL  +D+ +      +
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTL 260
Query: 295 PTSMANLTQLFHLDFSSNHFSDPIP 319
           P  +  L  L  L+ S N+    IP
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIP 285

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	348
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-53
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-40
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-33
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  186 bits (475), Expect = 2e-53
 Identities = 86/354 (24%), Positives = 140/354 (39%), Gaps = 29/354 (8%)

Query: 1   CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCDWNGVDCDEAGHVIGLDLSAEP 60
               +   LI  K+             +  WS + + C ++GV C     V  +DLS++P
Sbjct: 9   SLYREIHQLISFKDVL------PDKNLLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKP 61

Query: 61  ILIGSLENASGLFSLQYLQSLNLGFTLFYG-FPMPSSLPRLVTLDLSSREPISGFSWRLE 119
           + +G    +S L SL  L+SL L  +   G          L +LDLS     +  S    
Sbjct: 62  LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR----NSLS--GP 115

Query: 120 IPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLA- 178
           +       + + L+ L + +  L             L +L+VL+LS   +S         
Sbjct: 116 VTTLTSLGSCSGLKFLNVSSNTLDF--PGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173

Query: 179 --NLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLD 236
                 L  + +  N  +S  V   V+  +NL  LD+S  +     P  +     L+ LD
Sbjct: 174 SDGCGELKHLAISGNK-ISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLD 229

Query: 237 LSYNSLLQGSLPHFPKN-SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIP 295
           +S N L  G         + L+ LN+ +  F G +P     L++L  + ++   FT  IP
Sbjct: 230 ISGNKL-SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP 286

Query: 296 TSMA-NLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNIL 348
             ++     L  LD S NHF   +P         L  L LSSN+ +G +  + L
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPP-FFGSCSLLESLALSSNNFSGELPMDTL 339

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  144 bits (366), Expect = 1e-38
 Identities = 76/282 (26%), Positives = 120/282 (42%), Gaps = 20/282 (7%)

Query: 73  FSLQYLQSLNLGFTLFYG-FP--MPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNL 129
             L+ LQ L+L    F G  P  +  +   L  LDLS      G      +P F  F + 
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH-FYG-----AVPPF--FGSC 317

Query: 130 TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLL-SLSVIRL 188
           + L  L L + + SG        +  +  L+VL+LS    S  +   L NL  SL  + L
Sbjct: 318 SLLESLALSSNNFSGELPMD--TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375

Query: 189 RDNHAVSCQVPEFVAN--LLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGS 246
             N+  S  +   +       L  L L      GK P  +     L +L LS+N L  G+
Sbjct: 376 SSNN-FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL-SGT 433

Query: 247 LPH-FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLF 305
           +P      S LR+L L      G++P  +  ++ L ++ +   + T  IP+ ++N T L 
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493

Query: 306 HLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNI 347
            +  S+N  +  IP   +    NL  L LS+N  +G I + +
Sbjct: 494 WISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAEL 534

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  130 bits (330), Expect = 1e-33
 Identities = 72/312 (23%), Positives = 121/312 (38%), Gaps = 41/312 (13%)

Query: 62  LIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSL---PRLVTLDLSSREPISGFSWRL 118
             G +           LQ L L    F G  +P +L     LV+L LS    +SG     
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNY-LSG----- 432

Query: 119 EIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLA 178
            IP+     +L++LR+L L    L G   +    + ++  L+ L L    L+  I   L+
Sbjct: 433 TIPSS--LGSLSKLRDLKLWLNMLEGEIPQE---LMYVKTLETLILDFNDLTGEIPSGLS 487

Query: 179 NLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLS 238
           N  +L+ I L +N  ++ ++P+++  L NL  L LS     G  P ++    +L  LDL+
Sbjct: 488 NCTNLNWISLSNNR-LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546

Query: 239 YNSLLQGSLP---------------------HFPKNSSLRNLNLKN--TSFSGKLPDSIG 275
            N    G++P                     +   +   +  +       F G   + + 
Sbjct: 547 TNLF-NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605

Query: 276 NLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLS 335
            L      +++S  +      +  N   +  LD S N  S  IP   +     L  LNL 
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLG 664

Query: 336 SNDLTGGISSNI 347
            ND++G I   +
Sbjct: 665 HNDISGSIPDEV 676

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  127 bits (321), Expect = 1e-32
 Identities = 72/281 (25%), Positives = 118/281 (41%), Gaps = 40/281 (14%)

Query: 69  ASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN 128
              L  ++ L+ L+L F  F G                            E+P       
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSG----------------------------ELPES-LTNL 366

Query: 129 LTELRELYLDNVDLSGR-RTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIR 187
              L  L L + + SG      C+  +    LQ L L N   +  I   L+N   L  + 
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424

Query: 188 LRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSL 247
           L  N+ +S  +P  + +L  L  L L    L G+ P++++ V TLETL L +N  L G +
Sbjct: 425 LSFNY-LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND-LTGEI 482

Query: 248 PH-FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFH 306
           P      ++L  ++L N   +G++P  IG LENLA + +S+ +F+  IP  + +   L  
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542

Query: 307 LDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNI 347
           LD ++N F+  IP      +       +++N + G     I
Sbjct: 543 LDLNTNLFNGTIPA-----AMFKQSGKIAANFIAGKRYVYI 578

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  125 bits (316), Expect = 6e-32
 Identities = 70/297 (23%), Positives = 118/297 (39%), Gaps = 39/297 (13%)

Query: 72  LFSLQYLQSLNLGFTLFYGFPMPSS---LPRLVTLDLSSREPISGFSWRLEIPNFNFFQN 128
           L SL  L+ L L   +  G  +P     +  L TL L   + ++G     EIP+     N
Sbjct: 438 LGSLSKLRDLKLWLNMLEG-EIPQELMYVKTLETLILDFND-LTG-----EIPSG--LSN 488

Query: 129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRL 188
            T L  + L N  L+G   +W   +  L NL +L LSN   S  I   L +  SL  + L
Sbjct: 489 CTNLNWISLSNNRLTGEIPKW---IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

Query: 189 RDNH-------------------AVSCQVPEFVANLLNLTTLDLS--QCDLHGKFPEKVL 227
             N                     ++ +   ++ N         +    +  G   E++ 
Sbjct: 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605

Query: 228 QVPTLETLDLSYNSLLQGSLPHFPKN-SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVS 286
           ++ T    +++      G       N  S+  L++     SG +P  IG++  L  +++ 
Sbjct: 606 RLSTRNPCNITSRVY-GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664

Query: 287 SCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGI 343
             + +  IP  + +L  L  LD SSN     IP   +     L  ++LS+N+L+G I
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ-AMSALTMLTEIDLSNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.6 bits (192), Expect = 8e-16
 Identities = 48/246 (19%), Positives = 89/246 (36%), Gaps = 24/246 (9%)

Query: 70  SGLFSLQYLQSLNLGFTLFYGFPMPSS---LPRLVTLDLSSREPISGFSWRLEIPNFNFF 126
             +  L+ L  L L    F G  +P+       L+ LDL++    +G      IP     
Sbjct: 508 KWIGRLENLAILKLSNNSFSG-NIPAELGDCRSLIWLDLNTNL-FNG-----TIPAA--M 558

Query: 127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVI 186
              +      +    ++G+R  + K             +        +  L  L + +  
Sbjct: 559 FKQSGK----IAANFIAGKRYVYIKNDGMKKECH-GAGNLLEFQGIRSEQLNRLSTRNPC 613

Query: 187 RLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGS 246
            +               N  ++  LD+S   L G  P+++  +P L  L+L +N +  GS
Sbjct: 614 NITSRV-YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI-SGS 671

Query: 247 LPH-FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLF 305
           +P        L  L+L +    G++P ++  L  L  +D+S+ N + PIP       Q  
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM----GQFE 727

Query: 306 HLDFSS 311
               + 
Sbjct: 728 TFPPAK 733

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  144 bits (365), Expect = 1e-40
 Identities = 81/351 (23%), Positives = 137/351 (39%), Gaps = 54/351 (15%)

Query: 1   CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCD--WNGVDCDEAGHVIGLDLSA 58
           C    K  L+Q+K           P  +S W  +TDCC+  W GV CD            
Sbjct: 3   CNPQDKQALLQIKKDL------GNPTTLSSWLPTTDCCNRTWLGVLCDTDTQ-------- 48

Query: 59  EPILIGSLENASGLFSLQYLQSLNLGFTLFYG-FPMPSS---LPRLVTLDLSSREPISGF 114
                              + +L+L        +P+PSS   LP L  L +     + G 
Sbjct: 49  ----------------TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG- 91

Query: 115 SWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPIN 174
                IP       LT+L  LY+ + ++SG   ++   +S +  L  L+ S   LS  + 
Sbjct: 92  ----PIPPA--IAKLTQLHYLYITHTNVSGAIPDF---LSQIKTLVTLDFSYNALSGTLP 142

Query: 175 HHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTT-LDLSQCDLHGKFPEKVLQVPTLE 233
             +++L +L  I    N  +S  +P+   +   L T + +S+  L GK P     +  L 
Sbjct: 143 PSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLA 200

Query: 234 TLDLSYNSLLQGSLPH-FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR 292
            +DLS N L +G     F  + + + ++L   S +  L   +G  +NL  +D+ +     
Sbjct: 201 FVDLSRNML-EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYG 258

Query: 293 PIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGI 343
            +P  +  L  L  L+ S N+    IP       +  +    ++N    G 
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL--QRFDVSAYANNKCLCGS 307

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  121 bits (306), Expect = 4e-32
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 7/200 (3%)

Query: 150 CKAMSFLPNLQVLNLSNCLLS--DPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLN 207
           C   +    +  L+LS   L    PI   LANL  L+ + +   + +   +P  +A L  
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPH-FPKNSSLRNLNLKNTSF 266
           L  L ++  ++ G  P+ + Q+ TL TLD SYN+L  G+LP       +L  +       
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLPPSISSLPNLVGITFDGNRI 161

Query: 267 SGKLPDSIGNLENLASV-DVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYM 325
           SG +PDS G+   L +   +S    T  IP + ANL  L  +D S N        L    
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL-FGS 219

Query: 326 SRNLNYLNLSSNDLTGGISS 345
            +N   ++L+ N L   +  
Sbjct: 220 DKNTQKIHLAKNSLAFDLGK 239

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  106 bits (267), Expect = 1e-26
 Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 11/192 (5%)

Query: 162 LNLSNCLLSDPINHHLANLLSLSVIRLRDNH-AVSCQVPEFVANLLNLTTLDLS-QCDLH 219
            +  N      +         ++ + L   +      +P  +ANL  L  L +    +L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 220 GKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKN-SSLRNLNLKNTSFSGKLPDSIGNLE 278
           G  P  + ++  L  L +++ ++  G++P F     +L  L+    + SG LP SI +L 
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNV-SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 279 NLASVDVSSCNFTRPIPTSMANLTQLF-HLDFSSNHFSDPIPTL--RLYMSRNLNYLNLS 335
           NL  +       +  IP S  + ++LF  +  S N  +  IP     L    NL +++LS
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL----NLAFVDLS 205

Query: 336 SNDLTGGISSNI 347
            N L G  S   
Sbjct: 206 RNMLEGDASVLF 217

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  131 bits (331), Expect = 4e-34
 Identities = 44/347 (12%), Positives = 112/347 (32%), Gaps = 43/347 (12%)

Query: 27  KMSQWSESTDCCDWN---GVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNL 83
             + W+ + +   W    GV  +  G V GL L       G + +A  +  L  L+ L L
Sbjct: 56  PGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFG-ASGRVPDA--IGQLTELEVLAL 112

Query: 84  GFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLS 143
           G               +       ++      ++    +++  ++ ++L +  +++    
Sbjct: 113 GSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQ 172

Query: 144 G--------------------RRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSL 183
                                  T   KA+  L  L+   + N               + 
Sbjct: 173 KSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS 232

Query: 184 SVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLL 243
              +                NL +LT +++  C    K P  +  +P ++ ++++ N  +
Sbjct: 233 EYAQQYKT------EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286

Query: 244 QG--------SLPHFPKNSSLRNLNLKNTSF-SGKLPDSIGNLENLASVDVSSCNFTRPI 294
            G        +L   P    ++ + +   +  +  +  S+  ++ L  ++         +
Sbjct: 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL 346

Query: 295 PTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341
           P +  +  +L  L+ + N  ++         +  +  L+ + N L  
Sbjct: 347 P-AFGSEIKLASLNLAYNQITEIPANF-CGFTEQVENLSFAHNKLKY 391

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  111 bits (280), Expect = 2e-27
 Identities = 49/339 (14%), Positives = 104/339 (30%), Gaps = 63/339 (18%)

Query: 56  LSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSS---LPRLVTLDLSSREPIS 112
             +   L    +  +     + +Q + +G+     FP+ +S   + +L  L+    + + 
Sbjct: 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LE 343

Query: 113 GFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSD- 171
           G      +P F    +  +L  L L    ++     +C    F   ++ L+ ++  L   
Sbjct: 344 GK-----LPAF---GSEIKLASLNLAYNQITEIPANFC---GFTEQVENLSFAHNKLKYI 392

Query: 172 PINHHLANLLSLSVIRLRDNH------AVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEK 225
           P      ++  +S I    N            +       +N+++++LS   +     E 
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

Query: 226 VLQVPTLETLDLSYNSL-------LQGSLPHFPKNSSLRNLNLKNTSFSG---------- 268
                 L +++L  N L       L+    +F     L +++L+    +           
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512

Query: 269 --------------KLPDSIGNLENLAS------VDVSSCNFTRPIPTSMANLTQLFHLD 308
                         K P    N   L         D       R  P  +     L  L 
Sbjct: 513 PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572

Query: 309 FSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNI 347
             SN        +    + N++ L++  N       S +
Sbjct: 573 IGSNDIRKVNEKI----TPNISVLDIKDNPNISIDLSYV 607

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  108 bits (273), Expect = 3e-26
 Identities = 44/289 (15%), Positives = 95/289 (32%), Gaps = 25/289 (8%)

Query: 72  LFSLQYLQSLNLGFTLFYGFPMPSS---LPRLVTLDLSSREPISGFSWRLEIPNFNFFQN 128
             +L+ L  + +         +P+    LP +  ++++    ISG   + +         
Sbjct: 245 WDNLKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV 303

Query: 129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRL 188
             +++ +Y+   +L     E   ++  +  L +L      L   +     + + L+ + L
Sbjct: 304 GEKIQIIYIGYNNLKTFPVET--SLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNL 360

Query: 189 RDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEK--VLQVPTLETLDLSYNSL---- 242
             N  ++     F      +  L  +   L    P       V  +  +D SYN +    
Sbjct: 361 AYNQ-ITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVD 418

Query: 243 ---LQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFT-------R 292
                   P   K  ++ ++NL N   S    +       L+S+++     T       +
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478

Query: 293 PIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341
               +  N   L  +D   N  +      R      L  ++LS N  + 
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK 527

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 95.9 bits (239), Expect = 6e-22
 Identities = 49/313 (15%), Positives = 100/313 (31%), Gaps = 40/313 (12%)

Query: 63  IGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS--SLPRLVTLDLSS------REPISGF 114
           + +    + L  ++ L  L   +    G   P+  S  +L +L+L+            GF
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGF 375

Query: 115 SWRLE-----------IPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSF----LPNL 159
           + ++E           IPN    ++++ +  +     ++     +    +        N+
Sbjct: 376 TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435

Query: 160 QVLNLSNCLLSDPINHHLANLLSLSVIRLRDNH------AVSCQVPEFVANLLNLTTLDL 213
             +NLSN  +S       +    LS I L  N              E   N   LT++DL
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 214 SQCDLHGKFPE-KVLQVPTLETLDLSYNSLLQ-----GSLPHFPKNSSLRNLNLKNTSFS 267
               L     + +   +P L  +DLSYNS  +      +             + +     
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL 555

Query: 268 GKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSR 327
            + P+ I    +L  + + S +  + +   +     +  LD   N       +  +    
Sbjct: 556 REWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSY-VCPYI 611

Query: 328 NLNYLNLSSNDLT 340
                 L  +   
Sbjct: 612 EAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 8/151 (5%)

Query: 204 NLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPK----NSSLRNL 259
           +   +T L L      G+ P+ + Q+  LE L L  +          PK    N S    
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 260 NLKNTSFSGKLPDSIGNLE--NLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDP 317
                 +     D     +  +L    ++S    + I  S     +   +   SN+ +  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198

Query: 318 IPTLRLYMSRNLNYLNLSSNDLTGGISSNIL 348
              +       L    + ++           
Sbjct: 199 SKAVMR--LTKLRQFYMGNSPFVAENICEAW 227

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 7/78 (8%), Positives = 21/78 (26%), Gaps = 3/78 (3%)

Query: 273 SIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTL---RLYMSRNL 329
           S+ +   +  + +     +  +P ++  LT+L  L   S+             +  + + 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 330 NYLNLSSNDLTGGISSNI 347
                             
Sbjct: 136 EQKQKMRMHYQKTFVDYD 153

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  129 bits (327), Expect = 1e-33
 Identities = 61/284 (21%), Positives = 104/284 (36%), Gaps = 17/284 (5%)

Query: 63  IGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPN 122
           I  +++ S  F  Q+L+ +N  F  F        L  L  L  +S           +  N
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFP----TLKLKSLKRLTFTS----------NKGGN 339

Query: 123 FNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLS 182
                +L  L  L L    LS +     ++     +L+ L+LS   +   ++ +   L  
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCS-QSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQ 397

Query: 183 LSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSL 242
           L  +  + ++           +L NL  LD+S       F      + +LE L ++ NS 
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 243 LQGSLPHFPKN-SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANL 301
            +  LP       +L  L+L         P +  +L +L  +++S  NF          L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517

Query: 302 TQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISS 345
             L  LD+S NH          +   +L +LNL+ ND       
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  105 bits (264), Expect = 4e-25
 Identities = 54/282 (19%), Positives = 90/282 (31%), Gaps = 14/282 (4%)

Query: 71  GLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFS-WRLEIPNFNFFQNL 129
           G F    L  L L         M + +  L  L++         +   LE  + +  + L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 130 TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLR 189
             L         L     +     + L N+   +L +  +    +   +       + L 
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELV 312

Query: 190 DNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPH 249
           +      Q P     L +L  L  +       F E  L  P+LE LDLS N L       
Sbjct: 313 NCK--FGQFPTL--KLKSLKRLTFTSNKGGNAFSEVDL--PSLEFLDLSRNGLSFKGCCS 366

Query: 250 --FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSM-ANLTQLFH 306
                 +SL+ L+L        +  +   LE L  +D    N  +    S+  +L  L +
Sbjct: 367 QSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 307 LDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNIL 348
           LD S  H       +      +L  L ++ N        +I 
Sbjct: 426 LDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIF 466

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 96.3 bits (240), Expect = 4e-22
 Identities = 58/279 (20%), Positives = 98/279 (35%), Gaps = 27/279 (9%)

Query: 78  LQSLNLGFTLFYGFPMPS--SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELREL 135
            ++L+L F         S  S P L  LDLS           ++      +Q+L+ L  L
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC--------EIQTIEDGAYQSLSHLSTL 81

Query: 136 YLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVS 195
            L    +           S L +LQ L      L+   N  + +L +L  + +  N   S
Sbjct: 82  ILTGNPIQSLALGA---FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 196 CQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLE----TLDLSYNSLLQGSLPHFP 251
            ++PE+ +NL NL  LDLS   +   +   +  +  +     +LDLS N  +    P   
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAF 197

Query: 252 KNSSLRNLNLKNTSFSGKLP-DSIGNLENLASVDVS------SCNFTRPIPTSMANLTQL 304
           K   L  L L+N   S  +    I  L  L    +         N  +   +++  L  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 305 --FHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341
                  +   +             N++  +L S  +  
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 29/141 (20%), Positives = 46/141 (32%)

Query: 207 NLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSF 266
           +   LDLS   L           P L+ LDLS   +       +   S L  L L     
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 267 SGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMS 326
                 +   L +L  +     N        + +L  L  L+ + N              
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 327 RNLNYLNLSSNDLTGGISSNI 347
            NL +L+LSSN +     +++
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDL 169

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 17/172 (9%)

Query: 72  LFSLQYLQSLNLGFTLFYGFPMP---SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN 128
              L  L+ L +    F    +P   + L  L  LDLS          +LE  +   F +
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC--------QLEQLSPTAFNS 492

Query: 129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLL-SLSVIR 187
           L+ L+ L + + +     T        L +LQVL+ S   +       L +   SL+ + 
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFP---YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549

Query: 188 LRDNHAV-SCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLS 238
           L  N    +C+   F+  + +   L +    +    P     +P L  L+++
Sbjct: 550 LTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLS-LNIT 600

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  121 bits (305), Expect = 1e-30
 Identities = 61/293 (20%), Positives = 102/293 (34%), Gaps = 25/293 (8%)

Query: 68  NASGLFSLQYLQSLNLGFTLFYGFPMPS------SLPRLVTLDLSSREPISGFSWRLEIP 121
            ++    L  L+ L+L  +      + +      +   L  L+L+          ++   
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK--------NKISKI 396

Query: 122 NFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLL 181
             + F  L  L  L L   ++    T   +    L N+  + LS         +  A + 
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELTG--QEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454

Query: 182 SLSVIRLRDNH-AVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYN 240
           SL  + LR          P     L NLT LDLS  ++     + +  +  LE LDL +N
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514

Query: 241 SL-------LQGSLPHFPKN-SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR 292
           +L         G   +F K  S L  LNL++  F     +   +L  L  +D+   N   
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 293 PIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISS 345
              +   N   L  L+   N  +     +     RNL  L++  N       S
Sbjct: 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  111 bits (280), Expect = 4e-27
 Identities = 66/297 (22%), Positives = 108/297 (36%), Gaps = 21/297 (7%)

Query: 68  NASGLFSLQYLQSLNLGFTLFYGFPMPS--SLPRLVTLDLSSREPISGFSW-RLEIPNFN 124
                  L  L+   L +         S   L  +  L+L         S   L   +  
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 125 FFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLS--DPINHHLANL-- 180
            FQ L  L  L +++ D+ G ++      + L NL+ L+LSN   S     N    +L  
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSN---MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380

Query: 181 LSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQ-VPTLETLDLSY 239
             L ++ L  N  +S    +  + L +L  LDL   ++  +   +  + +  +  + LSY
Sbjct: 381 SPLHILNLTKNK-ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 240 NSLLQGSLPHFPKNSSLRNLNLKNTSFSG--KLPDSIGNLENLASVDVSSCNFTRPIPTS 297
           N  LQ +   F    SL+ L L+  +       P     L NL  +D+S+ N        
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499

Query: 298 MANLTQLFHLDFSSNHFSD-------PIPTLRLYMSRNLNYLNLSSNDLTGGISSNI 347
           +  L +L  LD   N+ +          P   L    +L+ LNL SN          
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  107 bits (268), Expect = 1e-25
 Identities = 67/298 (22%), Positives = 104/298 (34%), Gaps = 28/298 (9%)

Query: 75  LQYLQSLNLGFTLFYGFPMPS--SLPRLVTLDLS----SREPISGFSW------------ 116
              +  LNL        P  +     +L +LD+     S+                    
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 117 RLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHH 176
            L   +   F   T L EL+L +  +   +           NL  L+LS+  LS      
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN---PFVKQKNLITLDLSHNGLSSTKLGT 140

Query: 177 LANLLSLSVIRLRDNHAVSCQVPEF-VANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETL 235
              L +L  + L +N   + +  E  +    +L  L+LS   +    P     +  L  L
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200

Query: 236 DLSYNSL---LQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLE--NLASVDVSSCNF 290
            L+   L   L   L     N+S+RNL+L N+  S     +   L+  NL  +D+S  N 
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 291 TRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNIL 348
                 S A L QL +     N+         L+   N+ YLNL  +     IS   L
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSISLASL 317

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  103 bits (258), Expect = 2e-24
 Identities = 59/312 (18%), Positives = 114/312 (36%), Gaps = 37/312 (11%)

Query: 72  LFSLQYLQSLNLGFTLFYGFPMPS--SLPRLVTLDLSS-------REPISGFSW------ 116
               + L +L+L         + +   L  L  L LS+        E +  F+       
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 117 -----RLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSD 171
                +++  +   F  +  L  L+L+NV L    TE         +++ L+LSN  LS 
Sbjct: 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236

Query: 172 PINHHLANL--LSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQV 229
             N     L   +L+++ L  N+ ++    +  A L  L    L   ++   F   +  +
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

Query: 230 PTLETLDLSYN----SLLQGSLPHFPKNS-----SLRNLNLKNTSFSGKLPDSIGNLENL 280
             +  L+L  +    S+   SLP     S      L +LN+++    G   +    L NL
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355

Query: 281 ASVDVSS--CNFTRPIPTSMANL--TQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSS 336
             + +S+   +       +  +L  + L  L+ + N  S            +L  L+L  
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA-FSWLGHLEVLDLGL 414

Query: 337 NDLTGGISSNIL 348
           N++   ++    
Sbjct: 415 NEIGQELTGQEW 426

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  102 bits (256), Expect = 4e-24
 Identities = 64/289 (22%), Positives = 96/289 (33%), Gaps = 29/289 (10%)

Query: 74  SLQYLQSLNLGFTLFYGFPMPS--SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTE 131
            L  L+ LNL           +      L  L L S          ++    N F     
Sbjct: 71  KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN--------SIQKIKNNPFVKQKN 122

Query: 132 LRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLA--NLLSLSVIRLR 189
           L  L L +  LS  +         L NLQ L LSN  +    +  L      SL  + L 
Sbjct: 123 LITLDLSHNGLSSTKLGTQ---VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 190 DNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKV---LQVPTLETLDLSYNSLLQGS 246
            N  +    P     +  L  L L+   L     EK+   L   ++  L LS + L   S
Sbjct: 180 SNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 247 LPHFP--KNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQL 304
              F   K ++L  L+L   + +    DS   L  L    +   N       S+  L  +
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298

Query: 305 FHLDFSSNHFSDPIPTLRLYMS--------RNLNYLNLSSNDLTGGISS 345
            +L+   +     I    L           + L +LN+  ND+ G  S+
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 95.5 bits (238), Expect = 9e-22
 Identities = 56/302 (18%), Positives = 104/302 (34%), Gaps = 29/302 (9%)

Query: 54  LDLSAEPILIGSLENASGL-FSLQYLQSLNLGFTLFYGFP--MPSSLPRLVTLDLSSREP 110
           L LS     + +L N + +  +   L  LNL             S L  L  LDL   E 
Sbjct: 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE- 416

Query: 111 ISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLS 170
           I              ++ L  + E+YL                + +P+LQ L L    L 
Sbjct: 417 IGQ------ELTGQEWRGLENIFEIYLSYNKYLQLTRNSF---ALVPSLQRLMLRRVALK 467

Query: 171 DPINHH--LANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLH--------G 220
           +  +       L +L+++ L +N+ ++    + +  L  L  LDL   +L         G
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526

Query: 221 KFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENL 280
                +  +  L  L+L  N   +  +  F     L+ ++L   + +        N  +L
Sbjct: 527 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586

Query: 281 ASVDVSSCNFTRPIPTSMA-NLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDL 339
            S+++     T             L  LD   N F     +    ++  +N++N +  ++
Sbjct: 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES----IAWFVNWINETHTNI 642

Query: 340 TG 341
             
Sbjct: 643 PE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 5/185 (2%)

Query: 158 NLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCD 217
           + +V + S+  L+   +    N+  L+   L  N         F      LT+LD+    
Sbjct: 5   SHEVADCSHLKLTQVPDDLPTNITVLN---LTHNQLRRLPAANF-TRYSQLTSLDVGFNT 60

Query: 218 LHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNL 277
           +    PE   ++P L+ L+L +N L Q S   F   ++L  L+L + S      +     
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 278 ENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIP-TLRLYMSRNLNYLNLSS 336
           +NL ++D+S    +     +   L  L  L  S+N         L ++ + +L  L LSS
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 337 NDLTG 341
           N +  
Sbjct: 181 NQIKE 185

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  115 bits (290), Expect = 2e-28
 Identities = 59/366 (16%), Positives = 115/366 (31%), Gaps = 47/366 (12%)

Query: 10  IQMKNSFIFDVDSTPPAKMSQWSESTDCCDWN---GVDCDEAGHVIGLDLSAEPILIGSL 66
           +  KN   +            W+ + +   W    GVD D  G V GL L+      G +
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFG-AKGRV 339

Query: 67  ENASGLFSLQYLQSLNLG---FTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRL----- 118
            +A  +  L  L+ L+ G    T+         L   ++ +   R  +      L     
Sbjct: 340 PDA--IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397

Query: 119 ------------EIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSN 166
                         P     +  + +        +L+ R T   KA+  L  LQ++  +N
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457

Query: 167 CLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKV 226
              +           +    +  +N           +NL +LT ++L  C    + P+ +
Sbjct: 458 SPFTYDNIAVDWEDANSDYAKQYENE------ELSWSNLKDLTDVELYNCPNMTQLPDFL 511

Query: 227 LQVPTLETLDLSYNSL-----LQGSLPHFPKN----SSLRNLNLKNTSFSGKLPDS--IG 275
             +P L++L+++ N       L+        +      ++   +   +     P S  + 
Sbjct: 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQ 570

Query: 276 NLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLS 335
            +  L  +D            +     +L  L    N   + IP      +  +  L  S
Sbjct: 571 KMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFS 627

Query: 336 SNDLTG 341
            N L  
Sbjct: 628 HNKLKY 633

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 99.6 bits (248), Expect = 4e-23
 Identities = 35/265 (13%), Positives = 82/265 (30%), Gaps = 27/265 (10%)

Query: 95  SSLPRLVTLDLSS---REPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCK 151
             LP L +L+++           +    + +        +++  Y+   +L         
Sbjct: 512 YDLPELQSLNIACNRGISAAQLKADWTRLADD--EDTGPKIQIFYMGYNNLEEFPASA-- 567

Query: 152 AMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLL-NLTT 210
           ++  +  L +L+  +  +           + L+ ++L  N      +PE        +  
Sbjct: 568 SLQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIEE--IPEDFCAFTDQVEG 623

Query: 211 LDLSQCDLHGKFPEKVL--QVPTLETLDLSYNSLLQ-----GSLPHFPKNSSLRNLNLKN 263
           L  S   L    P       V  + ++D SYN +              K  +   + L  
Sbjct: 624 LGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682

Query: 264 TSFSGKLPDSIGNLENLASVDVSSCNFT-------RPIPTSMANLTQLFHLDFSSNHFSD 316
                   +       ++++ +S+   T       +P   +  N   L  +D   N  + 
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

Query: 317 PIPTLRLYMSRNLNYLNLSSNDLTG 341
                R      L+ +++S N  + 
Sbjct: 743 LSDDFRATTLPYLSNMDVSYNCFSS 767

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 98.0 bits (244), Expect = 1e-22
 Identities = 46/312 (14%), Positives = 90/312 (28%), Gaps = 35/312 (11%)

Query: 63  IGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSS------REPISGFSW 116
           +     ++ L  +  L  L+             +  +L  L L         E    F+ 
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTD 619

Query: 117 RLE-----------IPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSF--LPNLQVLN 163
           ++E           IPN    +++  +  +      +         +M      N   + 
Sbjct: 620 QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679

Query: 164 LSNCLLSDPINHHLANLLSLSVIRLRDNH------AVSCQVPEFVANLLNLTTLDLSQCD 217
           LS   +        A    +S I L +N                  N   LTT+DL    
Sbjct: 680 LSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739

Query: 218 LHGKFPEKVL-QVPTLETLDLSYNSLLQ-----GSLPHFPKNSSLRNLNLKNTSFSGKLP 271
           L     +     +P L  +D+SYN          +             + +      + P
Sbjct: 740 LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799

Query: 272 DSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSD-PIPTLRLYMSRNLN 330
             I    +L  + + S +  + +   +    QL+ LD + N      + ++  Y+   + 
Sbjct: 800 TGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMY 856

Query: 331 YLNLSSNDLTGG 342
            L         G
Sbjct: 857 VLLYDKTQDIRG 868

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 12/109 (11%), Positives = 32/109 (29%), Gaps = 1/109 (0%)

Query: 240 NSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMA 299
           N        +   +S   N N +   +  +    + N   +  + ++       +P ++ 
Sbjct: 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIG 344

Query: 300 NLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNIL 348
            LT+L  L F ++  +              +      + +        L
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDE-ELTPDMSEERKHRIRMHYKKMFL 392

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  115 bits (289), Expect = 2e-28
 Identities = 55/277 (19%), Positives = 96/277 (34%), Gaps = 15/277 (5%)

Query: 65  SLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFN 124
           S++    +      QSL++       FP    LP L +L L+            +     
Sbjct: 296 SIKYLEDVPKHFKWQSLSIIRCQLKQFP-TLDLPFLKSLTLTM----------NKGSISF 344

Query: 125 FFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLS 184
               L  L  L L    LS         +    +L+ L+LS       ++ +   L  L 
Sbjct: 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLG-TNSLRHLDLSFNGAII-MSANFMGLEELQ 402

Query: 185 VIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQ 244
            +  + +            +L  L  LD+S  +    F    L + +L TL ++ NS   
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462

Query: 245 GSLPHFPKN-SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQ 303
            +L +   N ++L  L+L               L  L  +++S  N      +    L  
Sbjct: 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522

Query: 304 LFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
           L  LD S N        L+ +   +L + NL++N + 
Sbjct: 523 LSTLDCSFNRIETSKGILQHFPK-SLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 94.7 bits (236), Expect = 1e-21
 Identities = 60/293 (20%), Positives = 97/293 (33%), Gaps = 19/293 (6%)

Query: 54  LDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPR--LVTLDLSSREPI 111
           L L         ++    L +L  L    L    F             +  L   + +  
Sbjct: 209 LTLRGNFNSSNIMKTC--LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 112 SGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSD 171
                     +   F  L  +  + L  V +          +      Q L++  C L  
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-----DVPKHFKWQSLSIIRCQLKQ 321

Query: 172 PINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPE--KVLQV 229
                L  L SL+   L  N      +      L +L+ LDLS+  L          L  
Sbjct: 322 FPTLDLPFLKSLT---LTMNKG---SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375

Query: 230 PTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDS-IGNLENLASVDVSSC 288
            +L  LDLS+N  +  S  +F     L++L+ ++++       S   +LE L  +D+S  
Sbjct: 376 NSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 289 NFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341
           N           LT L  L  + N F D   +     + NL +L+LS   L  
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 89.7 bits (223), Expect = 8e-20
 Identities = 52/273 (19%), Positives = 87/273 (31%), Gaps = 31/273 (11%)

Query: 73  FSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTEL 132
           F L Y    +     F        L  +  + L+           + I          + 
Sbjct: 266 FRLTYTNDFSDDIVKF------HCLANVSAMSLAG----------VSIKYLEDVPKHFKW 309

Query: 133 RELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNH 192
           + L +    L    T        LP L+ L L+    S         L SLS + L  N 
Sbjct: 310 QSLSIIRCQLKQFPT------LDLPFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRNA 361

Query: 193 --AVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQ-GSLPH 249
                C     +    +L  LDLS            + +  L+ LD  +++L +      
Sbjct: 362 LSFSGCCSYSDL-GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSA 419

Query: 250 FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSM-ANLTQLFHLD 308
           F     L  L++  T+           L +L ++ ++  +F     +++ AN T L  LD
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

Query: 309 FSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341
            S          +       L  LN+S N+L  
Sbjct: 480 LSKCQLEQISWGV-FDTLHRLQLLNMSHNNLLF 511

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 84.7 bits (210), Expect = 3e-18
 Identities = 42/201 (20%), Positives = 73/201 (36%), Gaps = 5/201 (2%)

Query: 152 AMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTL 211
           + S    LQ L+LS C +    +     L  LS + L  N  +    P   + L +L  L
Sbjct: 51  SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENL 109

Query: 212 DLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLP-HFPKNSSLRNLNLKNTSFSGKL 270
              +  L       + Q+ TL+ L++++N +    LP +F   ++L +++L         
Sbjct: 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169

Query: 271 PDSIGNLENLASVDVS---SCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSR 327
            + +  L     V++S   S N    I        +L  L    N  S  I    L    
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLA 229

Query: 328 NLNYLNLSSNDLTGGISSNIL 348
            L+   L   +     +  I 
Sbjct: 230 GLHVHRLILGEFKDERNLEIF 250

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 54/278 (19%), Positives = 99/278 (35%), Gaps = 28/278 (10%)

Query: 78  LQSLNLGFTLFYGFPMPS--SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELREL 135
            ++++L F         S  +   L  LDLS  E          I +   +  L  L  L
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI-------ETIED-KAWHGLHHLSNL 85

Query: 136 YLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVS 195
            L    +           S L +L+ L      L+   +  +  L++L  + +  N   S
Sbjct: 86  ILTGNPIQSFSPGS---FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 196 CQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQV-----PTLETLDLSYNSLLQGSLPHF 250
           C++P + +NL NL  +DLS   +        LQ          +LD+S N +       F
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201

Query: 251 PKNSSLRNLNLKNTSFSGKLP-DSIGNLENLASVDVSSCNF------TRPIPTSMANLTQ 303
            +   L  L L+    S  +    + NL  L    +    F          P+ M  L  
Sbjct: 202 -QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260

Query: 304 LFHLDFSSNHFSD-PIPTLRLYMSRNLNYLNLSSNDLT 340
           +   +F   + +D     ++ +   N++ ++L+   + 
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 26/135 (19%), Positives = 41/135 (30%)

Query: 207 NLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSF 266
           +   +DLS   L             L+ LDLS   +       +     L NL L     
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 267 SGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMS 326
               P S   L +L ++              +  L  L  L+ + N              
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152

Query: 327 RNLNYLNLSSNDLTG 341
            NL +++LS N +  
Sbjct: 153 TNLVHVDLSYNYIQT 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  112 bits (281), Expect = 2e-27
 Identities = 67/277 (24%), Positives = 101/277 (36%), Gaps = 15/277 (5%)

Query: 70  SGLFSLQYLQSLNLGFTLFYGFP--MPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQ 127
           SGL  L  L+ L L    F        S+ P L  L +       G + RLE+      +
Sbjct: 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK------GNTKRLELGT-GCLE 347

Query: 128 NLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIR 187
           NL  LREL L + D+          +  L +LQ LNLS                 L ++ 
Sbjct: 348 NLENLRELDLSHDDIETS-DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406

Query: 188 LRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSL---LQ 244
           L               NL  L  L+LS   L     +    +P L+ L+L  N       
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466

Query: 245 GSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQL 304
                      L  L L     S     +  +L+ +  VD+S    T     ++++L  +
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526

Query: 305 FHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341
            +L+ +SNH S  +P+L L +      +NL  N L  
Sbjct: 527 -YLNLASNHISIILPSL-LPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  103 bits (260), Expect = 1e-24
 Identities = 41/281 (14%), Positives = 91/281 (32%), Gaps = 19/281 (6%)

Query: 74  SLQYLQSLNLGFTLFYGFPMP--SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTE 131
           S   L +L L             S    L  L              +   +F    N   
Sbjct: 79  SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT--------GISSIDFIPLHNQKT 130

Query: 132 LRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDN 191
           L  LYL +  +S  +            L+VL+  N  +       +++L   + + L  N
Sbjct: 131 LESLYLGSNHISSIKLP---KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187

Query: 192 HAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPE--KVLQVPTLETLDLSYNSL--LQGSL 247
                 +     +     +L+           +  K   + +L            +  ++
Sbjct: 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 248 PHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHL 307
                  S+ ++NL+   F     ++      L  +D+++ + +  +P+ +  L+ L  L
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKL 306

Query: 308 DFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNIL 348
             S+N F + +  +      +L +L++  N     + +  L
Sbjct: 307 VLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCL 346

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 93.5 bits (233), Expect = 4e-21
 Identities = 50/295 (16%), Positives = 83/295 (28%), Gaps = 41/295 (13%)

Query: 54  LDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFP----MPSSLPRLVTLDLSSRE 109
           L+      L+   +      ++Q L                         + +++L    
Sbjct: 207 LNFGGTQNLLVIFKGLKNS-TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH- 264

Query: 110 PISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLL 169
                       + N F   + L+EL L    LS         +  L  L+ L LS    
Sbjct: 265 -------YFFNISSNTFHCFSGLQELDLTATHLSELP----SGLVGLSTLKKLVLSANKF 313

Query: 170 SDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQV 229
            +      +N  SL+ + ++ N          + NL NL  LDLS  D+           
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET--------- 364

Query: 230 PTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCN 289
                                   S L++LNL          ++      L  +D++   
Sbjct: 365 -------------SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411

Query: 290 FTR-PIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGI 343
                  +   NL  L  L+ S +        L       L +LNL  N    G 
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL-FDGLPALQHLNLQGNHFPKGN 465

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.8 bits (218), Expect = 3e-19
 Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 3/191 (1%)

Query: 152 AMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTL 211
             S L NL  L+L+ C +         +   L  + L  N  +       ++    L  L
Sbjct: 52  TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHL 110

Query: 212 DLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLP 271
              Q  +       +    TLE+L L  N +    LP       L+ L+ +N +      
Sbjct: 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170

Query: 272 DSIGNLENLASVDVS-SCNFTRPIPTSMANLTQLFHLDFSSNHFS-DPIPTLRLYMSRNL 329
           + + +L+   ++ ++ + N    I     +      L+F            L+    ++L
Sbjct: 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL 230

Query: 330 NYLNLSSNDLT 340
                   D  
Sbjct: 231 WLGTFEDMDDE 241

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.5 bits (212), Expect = 2e-18
 Identities = 58/325 (17%), Positives = 102/325 (31%), Gaps = 43/325 (13%)

Query: 54  LDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS--SLPRLVTLDLSSREPI 111
           L        I S++    L + + L+SL LG        +P      +L  LD  +    
Sbjct: 110 LFFIQ--TGISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN--- 163

Query: 112 SGFSWRLEIPNFNFFQNLTELRELYLD----------------------NVDLSGRRTEW 149
                 +   +     +L +   L L+                      N   +      
Sbjct: 164 -----AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVI 218

Query: 150 CKAMSF--LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNH-AVSCQVPEFVANLL 206
            K +    + +L +    +    D        L  +SV  +                   
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278

Query: 207 NLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSF 266
            L  LDL+   L  + P  ++ + TL+ L LS N              SL +L++K  + 
Sbjct: 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 267 SGKL-PDSIGNLENLASVDVSSCNFTR--PIPTSMANLTQLFHLDFSSNHFSDPIPTLRL 323
             +L    + NLENL  +D+S  +          + NL+ L  L+ S N     + T   
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAF 396

Query: 324 YMSRNLNYLNLSSNDLTGGISSNIL 348
                L  L+L+   L    + +  
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPF 421

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 37/189 (19%), Positives = 66/189 (34%), Gaps = 26/189 (13%)

Query: 154 SFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDL 213
           +   + + L  S  +L    N   + L+                         NLT LDL
Sbjct: 30  TLPNSTECLEFSFNVLPTIQNTTFSRLI-------------------------NLTFLDL 64

Query: 214 SQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDS 273
           ++C ++    +       L+TL L+ N L+  +        +L++L    T  S      
Sbjct: 65  TRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP 124

Query: 274 IGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIP-TLRLYMSRNLNYL 332
           + N + L S+ + S + +           +L  LDF +N         +          L
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184

Query: 333 NLSSNDLTG 341
           NL+ ND+ G
Sbjct: 185 NLNGNDIAG 193

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 8/121 (6%)

Query: 223 PEKVLQVPTLETLDLSYNSLLQ--GSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENL 280
            +K ++    +T +     L +  G+LP     +S   L             +   L NL
Sbjct: 5   DQKCIEKEVNKTYNCENLGLNEIPGTLP-----NSTECLEFSFNVLPTIQNTTFSRLINL 59

Query: 281 ASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
             +D++ C        +  +  +L  L  ++N       T  L   + L +L      ++
Sbjct: 60  TFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA-LSGPKALKHLFFIQTGIS 118

Query: 341 G 341
            
Sbjct: 119 S 119

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  100 bits (251), Expect = 3e-24
 Identities = 53/276 (19%), Positives = 102/276 (36%), Gaps = 28/276 (10%)

Query: 65  SLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFN 124
            + + S L +L  L+ L L           ++L ++ +L+L +   +S         + +
Sbjct: 99  KITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLS---------DLS 149

Query: 125 FFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLS 184
              N+T L  L +    +          ++ L +L  L+L+   + D     LA+L SL 
Sbjct: 150 PLSNMTGLNYLTVTESKVKD-----VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLH 202

Query: 185 VIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQ 244
                 N          VAN+  L +L +    +    P   L    L  L++  N +  
Sbjct: 203 YFTAYVNQITD---ITPVANMTRLNSLKIGNNKITDLSPLANL--SQLTWLEIGTNQI-- 255

Query: 245 GSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQL 304
             +      + L+ LN+ +   S      + NL  L S+ +++          +  LT L
Sbjct: 256 SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313

Query: 305 FHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
             L  S NH +D  P   L     ++  + ++  + 
Sbjct: 314 TTLFLSQNHITDIRPLASL---SKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 98.4 bits (246), Expect = 2e-23
 Identities = 48/288 (16%), Positives = 94/288 (32%), Gaps = 35/288 (12%)

Query: 54  LDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISG 113
           L     PI             L       L             L  +  L ++       
Sbjct: 5   LATLPAPI-----NQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGE----- 54

Query: 114 FSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPI 173
                ++ +    + LT L  L L+   ++         +S L  L  L +    ++D  
Sbjct: 55  -----KVASIQGIEYLTNLEYLNLNGNQITD-----ISPLSNLVKLTNLYIGTNKITDIS 104

Query: 174 NHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLE 233
              L NL +L  + L +++         +ANL  + +L+L            +  +  L 
Sbjct: 105 A--LQNLTNLRELYLNEDNISD---ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLN 158

Query: 234 TLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRP 293
            L ++ + +    +      + L +L+L            + +L +L          T  
Sbjct: 159 YLTVTESKV--KDVTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDI 214

Query: 294 IPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341
            P  +AN+T+L  L   +N  +D  P   L     L +L + +N ++ 
Sbjct: 215 TP--VANMTRLNSLKIGNNKITDLSPLANL---SQLTWLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 93.0 bits (232), Expect = 1e-21
 Identities = 48/264 (18%), Positives = 97/264 (36%), Gaps = 30/264 (11%)

Query: 78  LQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYL 137
             +L             + L   +   L           +  + +    + L  + +L +
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQ----------KASVTDVVTQEELESITKLVV 51

Query: 138 DNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQ 197
               ++       + + +L NL+ LNL+   ++D     L+NL+ L+ + +  N      
Sbjct: 52  AGEKVASI-----QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-- 102

Query: 198 VPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLR 257
               + NL NL  L L++ ++       +  +  + +L+L  N  L   L      + L 
Sbjct: 103 -ISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLN 158

Query: 258 NLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDP 317
            L +  +         I NL +L S+ ++        P  +A+LT L +     N  +D 
Sbjct: 159 YLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDI 214

Query: 318 IPTLRLYMSRNLNYLNLSSNDLTG 341
            P   +     LN L + +N +T 
Sbjct: 215 TPVANM---TRLNSLKIGNNKITD 235

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.1 bits (227), Expect = 6e-21
 Identities = 65/303 (21%), Positives = 113/303 (37%), Gaps = 48/303 (15%)

Query: 65  SLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFN 124
           S+ +      L+ +  L +             L  L  L+L+  +          I + +
Sbjct: 33  SVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQ----------ITDIS 82

Query: 125 FFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLS 184
              NL +L  LY+    ++        A+  L NL+ L L+   +SD     LANL  + 
Sbjct: 83  PLSNLVKLTNLYIGTNKITD-----ISALQNLTNLRELYLNEDNISDISP--LANLTKMY 135

Query: 185 VIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQ 244
            + L  NH +S      ++N+  L  L +++  +    P   L    L +L L+YN +  
Sbjct: 136 SLNLGANHNLS--DLSPLSNMTGLNYLTVTESKVKDVTPIANL--TDLYSLSLNYNQI-- 189

Query: 245 GSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQL 304
             +      +SL          +      + N+  L S+ + +   T   P  +ANL+QL
Sbjct: 190 EDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQL 245

Query: 305 FHLDFSSNHFSDPIPTLR-------LYMSRN-------------LNYLNLSSNDLTGGIS 344
             L+  +N  SD I  ++       L +  N             LN L L++N L     
Sbjct: 246 TWLEIGTNQISD-INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDM 304

Query: 345 SNI 347
             I
Sbjct: 305 EVI 307

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.7 bits (169), Expect = 3e-13
 Identities = 39/227 (17%), Positives = 81/227 (35%), Gaps = 24/227 (10%)

Query: 66  LENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNF 125
           L + S L ++  L  L +  +        ++L  L +L L+  +          I + + 
Sbjct: 145 LSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ----------IEDISP 194

Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSV 185
             +LT L         ++         ++ +  L  L + N  ++D     LANL  L+ 
Sbjct: 195 LASLTSLHYFTAYVNQITD-----ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTW 247

Query: 186 IRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQG 245
           + +  N          V +L  L  L++    +       +  +  L +L L+ N L   
Sbjct: 248 LEIGTNQISD---INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNE 302

Query: 246 SLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR 292
            +      ++L  L L     +   P  + +L  + S D ++    +
Sbjct: 303 DMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.9 bits (154), Expect = 3e-11
 Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 11/143 (7%)

Query: 203 ANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLK 262
           A+L       L +  +     ++ L   ++  L ++   +   S+      ++L  LNL 
Sbjct: 19  ADLAEGIRAVLQKASVTDVVTQEEL--ESITKLVVAGEKV--ASIQGIEYLTNLEYLNLN 74

Query: 263 NTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLR 322
               +      + NL  L ++ + +   T    +++ NLT L  L  + ++ SD  P   
Sbjct: 75  GNQITD--ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISPLAN 130

Query: 323 LYMSRNLNYLNLSSNDLTGGISS 345
           L     +  LNL +N     +S 
Sbjct: 131 L---TKMYSLNLGANHNLSDLSP 150

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 95.4 bits (238), Expect = 6e-22
 Identities = 66/276 (23%), Positives = 113/276 (40%), Gaps = 32/276 (11%)

Query: 66  LENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNF 125
           L + + L +L  L  + +           ++L  L  L L + +          I + + 
Sbjct: 80  LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ----------ITDIDP 129

Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSV 185
            +NLT L  L L +  +S        A+S L +LQ L+  N + +D     LANL +L  
Sbjct: 130 LKNLTNLNRLELSSNTISDI-----SALSGLTSLQQLSFGNQV-TDLKP--LANLTTLER 181

Query: 186 IRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQG 245
           + +  N          +A L NL +L  +   +    P  +L    L+ L L+ N L   
Sbjct: 182 LDISSNK---VSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQL--K 234

Query: 246 SLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLF 305
            +      ++L +L+L N   S   P  +  L  L  + + +   +   P  +A LT L 
Sbjct: 235 DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALT 290

Query: 306 HLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341
           +L+ + N   D  P   L   +NL YL L  N+++ 
Sbjct: 291 NLELNENQLEDISPISNL---KNLTYLTLYFNNISD 323

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 93.9 bits (234), Expect = 2e-21
 Identities = 61/288 (21%), Positives = 102/288 (35%), Gaps = 34/288 (11%)

Query: 66  LENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSR----EPISGFSWRLE-- 119
           + +   L +L  L  L L           S L  L  L   ++    +P++  +  LE  
Sbjct: 124 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLT-TLERL 182

Query: 120 ------IPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPI 173
                 + + +    LT L  L   N  +S         +  L NL  L+L+   L D  
Sbjct: 183 DISSNKVSDISVLAKLTNLESLIATNNQISD-----ITPLGILTNLDELSLNGNQLKDIG 237

Query: 174 NHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLE 233
              LA+L +L+ + L +N   +      ++ L  LT L L    +       +  +  L 
Sbjct: 238 T--LASLTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQISN--ISPLAGLTALT 290

Query: 234 TLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRP 293
            L+L+ N L    +       +L  L L   + S   P  + +L  L  +   +   +  
Sbjct: 291 NLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV 346

Query: 294 IPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341
               +ANLT +  L    N  SD  P   L     +  L L+    T 
Sbjct: 347 SS--LANLTNINWLSAGHNQISDLTPLANL---TRITQLGLNDQAWTN 389

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 91.2 bits (227), Expect = 1e-20
 Identities = 54/272 (19%), Positives = 99/272 (36%), Gaps = 32/272 (11%)

Query: 70  SGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNL 129
               +L       LG T        + L ++ TL              L I + +  + L
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADR----------LGIKSIDGVEYL 67

Query: 130 TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLR 189
             L ++   N  L+         +  L  L  + ++N  ++D     LANL +L+ + L 
Sbjct: 68  NNLTQINFSNNQLTD-----ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120

Query: 190 DNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPH 249
           +N        + + NL NL  L+LS   +       +  + +L+ L           L  
Sbjct: 121 NNQITD---IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVT---DLKP 172

Query: 250 FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDF 309
               ++L  L++ +   S      +  L NL S+  ++   +   P  +  LT L  L  
Sbjct: 173 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228

Query: 310 SSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341
           + N   D      L    NL  L+L++N ++ 
Sbjct: 229 NGNQLKDIGTLASL---TNLTDLDLANNQISN 257

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 86.2 bits (214), Expect = 8e-19
 Identities = 51/275 (18%), Positives = 96/275 (34%), Gaps = 29/275 (10%)

Query: 66  LENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNF 125
           + + S L  L  L+SL               L  L  L L+  +          + +   
Sbjct: 189 VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ----------LKDIGT 238

Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSV 185
             +LT L +L L N  +S         +S L  L  L L    +S+     LA L +L+ 
Sbjct: 239 LASLTNLTDLDLANNQISN-----LAPLSGLTKLTELKLGANQISNISP--LAGLTALTN 291

Query: 186 IRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQG 245
           + L +N          ++NL NLT L L   ++    P  V  +  L+ L    N +   
Sbjct: 292 LELNENQLED---ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--S 344

Query: 246 SLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLF 305
            +      +++  L+  +   S      + NL  +  + ++   +T       AN++   
Sbjct: 345 DVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVS--- 399

Query: 306 HLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
             +   N     I    +    +    +++ N  +
Sbjct: 400 IPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 85.0 bits (211), Expect = 2e-18
 Identities = 55/272 (20%), Positives = 105/272 (38%), Gaps = 32/272 (11%)

Query: 66  LENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNF 125
           + +   L +L  L+ L++         + + L  L +L  ++ +          I +   
Sbjct: 167 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ----------ISDITP 216

Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSV 185
              LT L EL L+   L          ++ L NL  L+L+N  +S+     L+ L  L+ 
Sbjct: 217 LGILTNLDELSLNGNQLKD-----IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269

Query: 186 IRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQG 245
           ++L  N   +      +A L  LT L+L++  L       +  +  L  L L +N++   
Sbjct: 270 LKLGANQISN---ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS-- 322

Query: 246 SLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLF 305
            +      + L+ L   N   S     S+ NL N+  +       +   P  +ANLT++ 
Sbjct: 323 DISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378

Query: 306 HLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSN 337
            L  +   +++           N++  N   N
Sbjct: 379 QLGLNDQAWTNAPVNY----KANVSIPNTVKN 406

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 57/239 (23%), Positives = 89/239 (37%), Gaps = 34/239 (14%)

Query: 120 IPNFNFFQNLTELRELYLDN-----------------VDLSGRRTEWCKAMSFLPNLQVL 162
           I        L E  +  L                   +       +    + +L NL  +
Sbjct: 14  INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQI 73

Query: 163 NLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKF 222
           N SN  L+D     L NL  L  I + +N          +ANL NLT L L    +    
Sbjct: 74  NFSNNQLTDITP--LKNLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFNNQITD-- 126

Query: 223 PEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLAS 282
            + +  +  L  L+LS N++    +      +SL+ L+  N          + NL  L  
Sbjct: 127 IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFGNQVTD---LKPLANLTTLER 181

Query: 283 VDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341
           +D+SS   +    + +A LT L  L  ++N  SD  P   L    NL+ L+L+ N L  
Sbjct: 182 LDISSNKVS--DISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGNQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 77.3 bits (191), Expect = 7e-16
 Identities = 48/255 (18%), Positives = 82/255 (32%), Gaps = 25/255 (9%)

Query: 65  SLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFN 124
            L++   L SL  L  L+L           S L +L  L L +           +I N +
Sbjct: 232 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN----------QISNIS 281

Query: 125 FFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLS 184
               LT L  L L+   L          +S L NL  L L    +SD     +++L  L 
Sbjct: 282 PLAGLTALTNLELNENQLEDI-----SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334

Query: 185 VIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQ 244
            +   +N          +ANL N+  L      +    P   L    +  L L+  +   
Sbjct: 335 RLFFYNNKVSD---VSSLANLTNINWLSAGHNQISDLTPLANL--TRITQLGLNDQAWTN 389

Query: 245 GSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQL 304
             + +    S    +     +     P +I +  +    D++  N            +Q 
Sbjct: 390 APVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITW-NLPSYTNEVSYTFSQP 446

Query: 305 FHLDFSSNHFSDPIP 319
             +   +  FS  + 
Sbjct: 447 VTIGKGTTTFSGTVT 461

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 94.9 bits (236), Expect = 1e-21
 Identities = 62/275 (22%), Positives = 102/275 (37%), Gaps = 31/275 (11%)

Query: 74  SLQYLQSLNLGFTLFYGFP--MPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTE 131
           +L+ L+ LNL +             L  L  L+LS           L     + F  L +
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN--------LLGELYSSNFYGLPK 339

Query: 132 LRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDN 191
           +  + L    ++  +    +   FL  LQ L+L +  L+      +  + S+  I L  N
Sbjct: 340 VAYIDLQKNHIAIIQ---DQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGN 391

Query: 192 HAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPH-F 250
             V+       ANL++L+   L   D+        L+VP L+ L L+ N     S     
Sbjct: 392 KLVTLPKINLTANLIHLSENRLENLDILYFL----LRVPHLQILILNQNRFSSCSGDQTP 447

Query: 251 PKNSSLRNLNLKNTSF-----SGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLF 305
            +N SL  L L          +    D    L +L  + ++        P   ++LT L 
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507

Query: 306 HLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
            L  +SN  +  +    L    NL  L++S N L 
Sbjct: 508 GLSLNSNRLTV-LSHNDL--PANLEILDISRNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 85.2 bits (211), Expect = 3e-18
 Identities = 63/292 (21%), Positives = 104/292 (35%), Gaps = 37/292 (12%)

Query: 75  LQYLQSLNLGFTLFYGFPMPS--SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTEL 132
           L   + L L F         S   L +L  L+L S+         L I     F+NL  L
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP------LTIDK-EAFRNLPNL 75

Query: 133 RELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPI--NHHLANLLSLSVIRLRD 190
           R L L +  +     +       L +L  L L  C LSD +  + +  NL +L+ + L  
Sbjct: 76  RILDLGSSKIYFLHPDA---FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 191 NHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPE--KVLQVPTLETLDLSYNSLLQ---- 244
           N   S  +      L +L ++D S   +        + LQ  TL    L+ NSL      
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192

Query: 245 --GSLPHFPKNSSLRNLNLKNTSFSGKLPD------------SIGNLENLASVDVSSCNF 290
             G   +  +N  L  L++    ++  +              S+    ++        N 
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252

Query: 291 TRPIPTSMANL--TQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
             P   + A L  + + HLD S       + +      ++L  LNL+ N + 
Sbjct: 253 KDPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKIN 303

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 81.8 bits (202), Expect = 4e-17
 Identities = 47/290 (16%), Positives = 93/290 (32%), Gaps = 32/290 (11%)

Query: 74  SLQYLQSLNLGFTLFYGFPMP----SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNL 129
            L +L  L L F       +      +L  L  LDLS  +  S       +     F  L
Sbjct: 95  GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS-------LYLHPSFGKL 147

Query: 130 TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANL------LSL 183
             L+ +   +  +        + +     L   +L+   L   ++            + L
Sbjct: 148 NSLKSIDFSSNQIFLVCEHELEPLQ-GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206

Query: 184 SVIRLRDNH-----------AVSCQVPEFVANLLNLTTLDLSQCDLHGKFPE--KVLQVP 230
            ++ +  N            A+S      +    ++        ++          L   
Sbjct: 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266

Query: 231 TLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNF 290
           ++  LDLS+  +   +   F     L+ LNL     +    ++   L+NL  +++S    
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326

Query: 291 TRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
                ++   L ++ ++D   NH +  I          L  L+L  N LT
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAI-IQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 81.4 bits (201), Expect = 5e-17
 Identities = 47/301 (15%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 72  LFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLS----SREPISGFSWRLEIPNFNFFQ 127
            FSL      +     +     P     L  LD+S    + +    FS  +         
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237

Query: 128 NLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIR 187
               +        ++          ++   +++ L+LS+  +    +     L  L V+ 
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNTFAGLA-RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296

Query: 188 LRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSL 247
           L  N         F   L NL  L+LS   L   +      +P +  +DL  N +     
Sbjct: 297 LAYNKINKIADEAF-YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355

Query: 248 PHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR--------------- 292
             F     L+ L+L++ + +     +I  + ++  + +S                     
Sbjct: 356 QTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE 410

Query: 293 ------PIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSN 346
                  I   +  +  L  L  + N FS          + +L  L L  N L     + 
Sbjct: 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470

Query: 347 I 347
           +
Sbjct: 471 L 471

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 78.7 bits (194), Expect = 3e-16
 Identities = 47/202 (23%), Positives = 70/202 (34%), Gaps = 12/202 (5%)

Query: 156 LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQ 215
           L   + L LS   +          L  L ++ L   +       E   NL NL  LDL  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 216 CDLHGKFPEKVLQ-VPTLETLDLSYNSLLQGSLPH--FPKNSSLRNLNL-KNTSFSGKLP 271
             ++        Q +  L  L L +  L    L    F    +L  L+L KN   S  L 
Sbjct: 83  SKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 272 DSIGNLENLASVDVSSCNFTRPIPTSMANLTQ--LFHLDFSSNHFSDPIP-----TLRLY 324
            S G L +L S+D SS          +  L    L     ++N     +       +  +
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 325 MSRNLNYLNLSSNDLTGGISSN 346
            +  L  L++S N  T  I+ N
Sbjct: 202 RNMVLEILDVSGNGWTVDITGN 223

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 51/271 (18%), Positives = 91/271 (33%), Gaps = 25/271 (9%)

Query: 72  LFSLQYLQSLNLGFTLFYGFPMPSSLP----------RLVTLDLSSREPISGFSWRLEIP 121
              L+ LQ+L+L            S+P           L  ++L++       +    + 
Sbjct: 358 FKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLD 417

Query: 122 NFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHL---- 177
              F   +  L+ L L+    S    +   +    P+L+ L L   +L       L    
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSE--NPSLEQLFLGENMLQLAWETELCWDV 475

Query: 178 -ANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLD 236
              L  L V+ L  N+ ++   P   ++L  L  L L+   L        L    LE LD
Sbjct: 476 FEGLSHLQVLYLNHNY-LNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLP-ANLEILD 532

Query: 237 LSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLP-DSIGNLENLASVDVSSCNFTRPIP 295
           +S N LL  +   F    SL  L++ +  F  +    +  N  N  +V ++         
Sbjct: 533 ISRNQLLAPNPDVFV---SLSVLDITHNKFICECELSTFINWLNHTNVTIAG-PPADIYC 588

Query: 296 TSMANLTQLFHLDFSSNHFSDPIPTLRLYMS 326
               + + +     S+    +      L  S
Sbjct: 589 VYPDSFSGVSLFSLSTEGCDEEEVLKSLKFS 619

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 253 NSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSN 312
           +   R    +  + + ++P  +   E L    +S         +S   L QL  L+  S 
Sbjct: 3   SFDGRIAFYRFCNLT-QVPQVLNTTERL---LLSFNYIRTVTASSFPFLEQLQLLELGSQ 58

Query: 313 HFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
           +    I         NL  L+L S+ + 
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIY 86

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 28/174 (16%)

Query: 63  IGSLENASGLFSLQYLQSLNLGFTLFYGFP---MPSSLPRLVTLDLSSREPISGFSWRLE 119
           + +L+    L  + +LQ L L    F        PS  P L  L L         +W  E
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM--LQLAWETE 470

Query: 120 IPNFNFFQNLTELRELYLDN-------------------VDLSGRRTEWCKAMSFLPNLQ 160
           +   + F+ L+ L+ LYL++                   + L+  R           NL+
Sbjct: 471 LCW-DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLE 529

Query: 161 VLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLS 214
           +L++S   L  P      +L  L +    +     C++  F+ N LN T + ++
Sbjct: 530 ILDISRNQLLAPNPDVFVSLSVLDI--THNKFICECELSTFI-NWLNHTNVTIA 580

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 93.2 bits (232), Expect = 4e-21
 Identities = 53/256 (20%), Positives = 95/256 (37%), Gaps = 21/256 (8%)

Query: 63  IGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPN 122
           I  +++ S  F  Q+L+ +N  F  F        L  L  L  +S           +  N
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQF----PTLKLKSLKRLTFTS----------NKGGN 339

Query: 123 FNFFQNLTELRELYLDNVDLSGRRTEWCKAMSF--LPNLQVLNLSNCLLSDPINHHLANL 180
                +L  L  L L    LS +    C + S     +L+ L+LS   +   ++ +   L
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKG---CCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGL 395

Query: 181 LSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYN 240
             L  +  + ++           +L NL  LD+S       F      + +LE L ++ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 241 SLLQGSLPH-FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMA 299
           S  +  LP  F +  +L  L+L         P +  +L +L  ++++S            
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515

Query: 300 NLTQLFHLDFSSNHFS 315
            LT L  +   +N + 
Sbjct: 516 RLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 90.2 bits (224), Expect = 4e-20
 Identities = 54/284 (19%), Positives = 89/284 (31%), Gaps = 16/284 (5%)

Query: 70  SGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSW-RLEIPNFNFFQN 128
            G F    L  L L         M + +  L  L++         +   LE  + +  + 
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSD-PINHHLANLLSLSVIR 187
           L  L         L     +     + L N+   +L +  +       +      L ++ 
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 313

Query: 188 LRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSL 247
            +       Q P     L +L  L  +       F E  L  P+LE LDLS N L     
Sbjct: 314 CKFG-----QFPTL--KLKSLKRLTFTSNKGGNAFSEVDL--PSLEFLDLSRNGLSFKGC 364

Query: 248 PH--FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSM-ANLTQL 304
                   +SL+ L+L        +  +   LE L  +D    N  +    S+  +L  L
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 305 FHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNIL 348
            +LD S  H              +L  L ++ N        +I 
Sbjct: 424 IYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 39/227 (17%), Positives = 73/227 (32%), Gaps = 20/227 (8%)

Query: 119 EIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLA 178
            + +F++      L  +                    L +L+ L  ++    +  +    
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQFPT---------LKLKSLKRLTFTSNKGGNAFS--EV 344

Query: 179 NLLSLSVIRLRDNHAVSCQVPEFV-ANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDL 237
           +L SL  + L  N                +L  LDLS   +        L +  LE LD 
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 403

Query: 238 SYNSLLQGSLPH---FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPI 294
            +++L    +     F    +L  L++ +T            L +L  + ++  +F    
Sbjct: 404 QHSNL--KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 295 PTSM-ANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
              +   L  L  LD S       +         +L  LN++SN L 
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.7 bits (189), Expect = 2e-15
 Identities = 58/278 (20%), Positives = 98/278 (35%), Gaps = 27/278 (9%)

Query: 78  LQSLNLGFTLFYGFPMPS--SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELREL 135
            ++L+L F         S  S P L  LDLS           ++      +Q+L+ L  L
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC--------EIQTIEDGAYQSLSHLSTL 81

Query: 136 YLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVS 195
            L    +           S L +LQ L      L+   N  + +L +L  + +  N   S
Sbjct: 82  ILTGNPIQSLALGA---FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 196 CQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLE----TLDLSYNSLLQGSLPHFP 251
            ++PE+ +NL NL  LDLS   +   +   +  +  +     +LDLS N +       F 
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF- 197

Query: 252 KNSSLRNLNLKNTSFSGKLPD-SIGNLENLASVD------VSSCNFTRPIPTSMANLTQL 304
           K   L  L L+N   S  +    I  L  L           +  N  +   +++  L  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 305 F--HLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
                  +   +             N++  +L S  + 
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 91.7 bits (228), Expect = 1e-20
 Identities = 56/247 (22%), Positives = 98/247 (39%), Gaps = 15/247 (6%)

Query: 95  SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS 154
           +S P L  L+L+    +S       +     F NL  LR L L +  L           +
Sbjct: 53  ASFPHLEELELNENI-VS------AVEP-GAFNNLFNLRTLGLRSNRLKLIPLG---VFT 101

Query: 155 FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLS 214
            L NL  L++S   +   +++   +L +L  + + DN  V      F + L +L  L L 
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF-SGLNSLEQLTLE 160

Query: 215 QCDLHGKFPEKVLQ-VPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDS 273
           +C+L    P + L  +  L  L L + ++       F +   L+ L + +  +   +  +
Sbjct: 161 KCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219

Query: 274 IGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLN 333
                NL S+ ++ CN T     ++ +L  L  L+ S N  S  I    L+    L  + 
Sbjct: 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-IEGSMLHELLRLQEIQ 278

Query: 334 LSSNDLT 340
           L    L 
Sbjct: 279 LVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.5 bits (225), Expect = 3e-20
 Identities = 53/249 (21%), Positives = 94/249 (37%), Gaps = 16/249 (6%)

Query: 94  PSSLPR-LVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA 152
           P  +P     LDL           R++  N + F +   L EL L+   +S        A
Sbjct: 27  PEGIPTETRLLDLGKN--------RIKTLNQDEFASFPHLEELELNENIVSAVEP---GA 75

Query: 153 MSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLD 212
            + L NL+ L L +  L          L +L+ + + +N  V      F  +L NL +L+
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF-QDLYNLKSLE 134

Query: 213 LSQCDLHGKFPEKVLQ-VPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLP 271
           +   DL      +    + +LE L L   +L             L  L L++ + +    
Sbjct: 135 VGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193

Query: 272 DSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNY 331
            S   L  L  +++S   +   +  +      L  L  +  + +  +P L +     L +
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRF 252

Query: 332 LNLSSNDLT 340
           LNLS N ++
Sbjct: 253 LNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.4 bits (222), Expect = 7e-20
 Identities = 65/276 (23%), Positives = 105/276 (38%), Gaps = 20/276 (7%)

Query: 69  ASGLFS-LQYLQSLNLGFTLFYGFP--MPSSLPRLVTLDLSSREPISGFSWRLEIPNFNF 125
             G F+ L  L++L L        P  + + L  L  LD+S          ++ I     
Sbjct: 72  EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN--------KIVILLDYM 123

Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSV 185
           FQ+L  L+ L + + DL        +A S L +L+ L L  C L+      L++L  L V
Sbjct: 124 FQDLYNLKSLEVGDNDLVYISH---RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180

Query: 186 IRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQG 245
           +RLR  + ++         L  L  L++S            L    L +L +++ +L   
Sbjct: 181 LRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL--T 237

Query: 246 SLPH--FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQ 303
           ++P+        LR LNL     S      +  L  L  + +         P +   L  
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297

Query: 304 LFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDL 339
           L  L+ S N  +  +     +   NL  L L SN L
Sbjct: 298 LRVLNVSGNQLTT-LEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 79.4 bits (196), Expect = 1e-16
 Identities = 49/222 (22%), Positives = 87/222 (39%), Gaps = 14/222 (6%)

Query: 95  SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS 154
             L  L +L++     +        I +   F  L  L +L L+  +L+   TE   A+S
Sbjct: 125 QDLYNLKSLEVG-DNDLV------YISH-RAFSGLNSLEQLTLEKCNLTSIPTE---ALS 173

Query: 155 FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLS 214
            L  L VL L +  ++   ++    L  L V+ +     +    P      LNLT+L ++
Sbjct: 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC-LYGLNLTSLSIT 232

Query: 215 QCDLHGKFPEKVLQ-VPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDS 273
            C+L    P   ++ +  L  L+LSYN +         +   L+ + L     +   P +
Sbjct: 233 HCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291

Query: 274 IGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFS 315
              L  L  ++VS    T    +   ++  L  L   SN  +
Sbjct: 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 39/193 (20%), Positives = 70/193 (36%), Gaps = 4/193 (2%)

Query: 157 PNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQC 216
              ++L+L    +        A+   L  + L +N   + +   F  NL NL TL L   
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLRSN 90

Query: 217 DLHGKFPEKVLQ-VPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIG 275
            L    P  V   +  L  LD+S N ++      F    +L++L + +         +  
Sbjct: 91  RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149

Query: 276 NLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLS 335
            L +L  + +  CN T     ++++L  L  L     + +  I          L  L +S
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEIS 208

Query: 336 SNDLTGGISSNIL 348
                  ++ N L
Sbjct: 209 HWPYLDTMTPNCL 221

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.9 bits (216), Expect = 2e-19
 Identities = 41/222 (18%), Positives = 77/222 (34%), Gaps = 18/222 (8%)

Query: 128 NLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIR 187
            L+ L+ + +D   L     E    M     L+ L L+   L   +   +A+L  L  + 
Sbjct: 102 RLSHLQHMTIDAAGL----MELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELS 156

Query: 188 LRDNHA--------VSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSY 239
           +R             S         L+NL +L L    +    P  +  +  L++L +  
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRN 215

Query: 240 NSLLQGSLPHFPKN-SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSM 298
           + L   +L     +   L  L+L+  +     P   G    L  + +  C+    +P  +
Sbjct: 216 SPLS--ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273

Query: 299 ANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
             LTQL  LD         +P+L +        + +  +   
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.0 bits (211), Expect = 7e-19
 Identities = 56/270 (20%), Positives = 97/270 (35%), Gaps = 28/270 (10%)

Query: 63  IGSLENASGLFSLQYLQSLNLGFTLFYGFPMP-SSLPRLVTLDLSSREPISGFSWRLEIP 121
           + +  +     +     +L L       FP     L  L  + + +    +G     E+P
Sbjct: 68  LKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDA----AGLM---ELP 120

Query: 122 NFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNC---------LLSDP 172
           +    Q    L  L L    L         +++ L  L+ L++  C         L S  
Sbjct: 121 DT--MQQFAGLETLTLARNPL----RALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 173 INHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTL 232
            +     L++L  +RL      S  +P  +ANL NL +L +    L       +  +P L
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231

Query: 233 ETLDLSYNSLLQGSLPHFPKN-SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFT 291
           E LDL   + L+ + P      + L+ L LK+ S    LP  I  L  L  +D+  C   
Sbjct: 232 EELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 292 RPIPTSMANLTQLFHLDFSSNHFSDPIPTL 321
             +P+ +A L     +    +  +      
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.4 bits (173), Expect = 8e-14
 Identities = 28/196 (14%), Positives = 54/196 (27%), Gaps = 21/196 (10%)

Query: 156 LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQ 215
               + L         P +  L+                        AN  N      + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRN-----RWHSAWRQANSNNPQIETRTG 65

Query: 216 CDLHGKFPE--KVLQVPTLETLDLSYNSLLQGSLPHFPKN-SSLRNLNLKNTSFSGKLPD 272
             L     +  +    P    L+L    L     P      S L+++ +       +LPD
Sbjct: 66  RALK-ATADLLEDATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLM-ELPD 121

Query: 273 SIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSN--------HFSDPIPTLRLY 324
           ++     L ++ ++       +P S+A+L +L  L   +           +    +    
Sbjct: 122 TMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 325 MSRNLNYLNLSSNDLT 340
              NL  L L    + 
Sbjct: 181 GLVNLQSLRLEWTGIR 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 19/163 (11%), Positives = 39/163 (23%), Gaps = 31/163 (19%)

Query: 199 PEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQG------------- 245
                +      L          + + + Q       D +                    
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT 64

Query: 246 --SLPHFPKN------SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTS 297
             +L                 L L++     + PD    L +L  + + +      +P +
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDT 122

Query: 298 MANLTQLFHLDFSSNHFS---DPIPTLRLYMSRNLNYLNLSSN 337
           M     L  L  + N        I +L       L  L++ + 
Sbjct: 123 MQQFAGLETLTLARNPLRALPASIASL-----NRLRELSIRAC 160

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 15/97 (15%), Positives = 25/97 (25%), Gaps = 5/97 (5%)

Query: 245 GSLPHFPKN-SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQ 303
           GS  H   + S   NL  + ++      D +   +   + D +  +         AN   
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57

Query: 304 LFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
                 +          L          L L S  L 
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP 94

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 84.4 bits (209), Expect = 3e-18
 Identities = 55/290 (18%), Positives = 96/290 (33%), Gaps = 34/290 (11%)

Query: 74  SLQYLQSLNLGFTLFYGFPMP---SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLT 130
            L  L+ LNL    +    +     +L  L TL + + E  S      EI     F  LT
Sbjct: 96  PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS------EIRR-IDFAGLT 148

Query: 131 ELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRD 190
            L EL +  + L   +++   ++  + ++  L L     +  +      L S+  + LRD
Sbjct: 149 SLNELEIKALSLRNYQSQ---SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 191 NHAVSCQVPEFVA----------NLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYN 240
            +    Q                        D S  +L  K    +L++  +E  D + N
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL-KLLRYILELSEVEFDDCTLN 264

Query: 241 SLLQGSL--------PHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR 292
            L   +             +  ++R L++        L      LE +  + V +     
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL 324

Query: 293 PIPTSMANLTQLFHLDFSSNHFSD--PIPTLRLYMSRNLNYLNLSSNDLT 340
              +   +L  L  LD S N   +     +       +L  L LS N L 
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 49/297 (16%), Positives = 91/297 (30%), Gaps = 18/297 (6%)

Query: 50  HVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSRE 109
            +   +L+        ++  S        +   L    F            ++       
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 110 PISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSG--RRTEWCKAMSFLPNLQVLNLSNC 167
            ++G          +    L ++  + +  + +       +     S L  ++ + + N 
Sbjct: 262 TLNGLGD-FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 168 LLSDPINHHLANLLSLSVIRLRDN--HAVSCQVPEFVANLLNLTTLDLSQCDLH--GKFP 223
            +         +L SL  + L +N       +         +L TL LSQ  L    K  
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380

Query: 224 EKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASV 283
           E +L +  L +LD+S N+              +R LNL +T     +   I   + L  +
Sbjct: 381 EILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVL 436

Query: 284 DVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
           DVS+ N           L +L  L  S N                L  + +S N L 
Sbjct: 437 DVSNNNLDS-FS---LFLPRLQELYISRNKLKTLPDASLF---PVLLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.5 bits (186), Expect = 3e-15
 Identities = 51/271 (18%), Positives = 95/271 (35%), Gaps = 21/271 (7%)

Query: 73  FSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTEL 132
                     LG        + S L ++ T+ +  R  I  F    ++     +  L ++
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR-RLHIPQFYLFYDLSTV--YSLLEKV 312

Query: 133 RELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHH---LANLLSLSVIRLR 189
           + + ++N  +       C     L +L+ L+LS  L+ +    +        SL  + L 
Sbjct: 313 KRITVENSKVFLVP---CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369

Query: 190 DNHAVSCQ-VPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLP 248
            NH  S Q   E +  L NLT+LD+S+   H   P+       +  L+LS   +      
Sbjct: 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTC 428

Query: 249 HFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLD 308
                 +L  L++ N +        +  L+ L    +S       +P   +    L  + 
Sbjct: 429 IPQ---TLEVLDVSNNNLD-SFSLFLPRLQEL---YISRNKLKT-LP-DASLFPVLLVMK 479

Query: 309 FSSNHFSDPIPTLRLYMSRNLNYLNLSSNDL 339
            S N     +P        +L  + L +N  
Sbjct: 480 ISRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.4 bits (183), Expect = 8e-15
 Identities = 49/259 (18%), Positives = 89/259 (34%), Gaps = 24/259 (9%)

Query: 60  PILIGSLENASGLFSLQYLQSLNLGFTLFYGFP--MPSSLPRLVTLDLSSREPISGFSWR 117
           P     +     + ++  ++ L++     +     + S L ++  + + +    S     
Sbjct: 271 PSESDVVSELGKVETVT-IRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN----SKVF-- 323

Query: 118 LEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSD--PINH 175
             +P  +F Q+L  L  L L    +     +        P+LQ L LS   L        
Sbjct: 324 -LVPC-SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

Query: 176 HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETL 235
            L  L +L+ + +  N       P+       +  L+LS   +       + Q  TLE L
Sbjct: 382 ILLTLKNLTSLDISRNTFHPM--PDSCQWPEKMRFLNLSSTGIR-VVKTCIPQ--TLEVL 436

Query: 236 DLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIP 295
           D+S N+L   S   F     L+ L +        LPD+      L  + +S         
Sbjct: 437 DVSNNNL--DSFSLFLPR--LQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPD 490

Query: 296 TSMANLTQLFHLDFSSNHF 314
                LT L  +   +N +
Sbjct: 491 GIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 48/285 (16%), Positives = 103/285 (36%), Gaps = 28/285 (9%)

Query: 74  SLQYLQSLNLGFTLFYGFP--MPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTE 131
           S++ +  L L  +            L  +  L+L           R +       +  + 
Sbjct: 170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN-----LARFQFSPLPVDEVSSP 224

Query: 132 LRELYLDNVDLS-GRRTEWCKAMSFLPNLQVLNLSNC------LLSDPINHHLANLLSLS 184
           +++L      L+     E  K + ++  L  +   +C        +   +  ++ L  + 
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 185 VIRLRDNHAVSCQV----PEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYN 240
            + +R  H     +        + L  +  + +    +          + +LE LDLS N
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344

Query: 241 SLLQGSLPH---FPKNSSLRNLNLKNTSFS--GKLPDSIGNLENLASVDVSSCNFTRPIP 295
            +++  L +        SL+ L L         K  + +  L+NL S+D+S   F   +P
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MP 403

Query: 296 TSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
            S     ++  L+ SS      I  ++  + + L  L++S+N+L 
Sbjct: 404 DSCQWPEKMRFLNLSSTG----IRVVKTCIPQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.4 bits (170), Expect = 3e-13
 Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 4/189 (2%)

Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSV 185
            +    L+ L L +  ++    +   A   L +L+ L+LS+  LS   +     L SL  
Sbjct: 46  LRACANLQVLILKSSRINTIEGD---AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102

Query: 186 IRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQ-VPTLETLDLSYNSLLQ 244
           + L  N   +  V     NL NL TL +   +   +        + +L  L++   SL  
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162

Query: 245 GSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQL 304
                      + +L L  +  +  L      L ++  +++   N  R   + +      
Sbjct: 163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVS 222

Query: 305 FHLDFSSNH 313
             +   +  
Sbjct: 223 SPMKKLAFR 231

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 25/141 (17%), Positives = 52/141 (36%), Gaps = 3/141 (2%)

Query: 208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFS 267
               D          P  +     +++LDLS+N +           ++L+ L LK++  +
Sbjct: 7   SGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 268 GKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSR 327
               D+  +L +L  +D+S  + +    +    L+ L +L+   N +     T       
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 328 NLNYLNLSSNDLTGGISSNIL 348
           NL  L + + +    I     
Sbjct: 124 NLQTLRIGNVETFSEIRRIDF 144

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 8/113 (7%)

Query: 230 PTLETLDLSYNSLLQGSLPHFPKN--SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSS 287
                 D         S    P    +++++L+L     +      +    NL  + + S
Sbjct: 5   DASGVCDGRSR-----SFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 288 CNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
                    +  +L  L HLD S NH S  + +       +L YLNL  N   
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQ 111

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 30/159 (18%), Positives = 53/159 (33%), Gaps = 23/159 (14%)

Query: 63  IGSLENASGLFS-LQYLQSLNLGFTLFYGFP-MPSSLPRLVTLDLSSREPISGFSWRLEI 120
           + S++    +   L+ L SL++    F+  P       ++  L+LSS          + +
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST--------GIRV 424

Query: 121 PNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANL 180
                 Q L  L    + N +L            FLP LQ L +S   L        +  
Sbjct: 425 VKTCIPQTLEVL---DVSNNNLD-------SFSLFLPRLQELYISRNKLKTL--PDASLF 472

Query: 181 LSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLH 219
             L V+++  N  +          L +L  + L      
Sbjct: 473 PVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.8 bits (205), Expect = 3e-18
 Identities = 51/218 (23%), Positives = 88/218 (40%), Gaps = 9/218 (4%)

Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSF--LPNLQVLNLSNCLLSDPINHHLANLLSL 183
           F  LT+L +L L +  LS +    C + S     +L+ L+LS   +   ++ +   L  L
Sbjct: 48  FDKLTQLTKLSLSSNGLSFKG---CCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQL 103

Query: 184 SVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQ-VPTLETLDLSYNSL 242
             +  + ++           +L NL  LD+S           +   + +LE L ++ NS 
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSF 162

Query: 243 LQGSLPHFPKN-SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANL 301
            +  LP       +L  L+L         P +  +L +L  +++S  NF          L
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222

Query: 302 TQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDL 339
             L  LD+S NH          +   +L +LNL+ ND 
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 50/225 (22%), Positives = 85/225 (37%), Gaps = 19/225 (8%)

Query: 70  SGLFS-LQYLQSLNLGFTLFYGFPMPS----SLPRLVTLDLSSREPISGFSWRLEIPNFN 124
            G+F  L  L  L+L           S        L  LDLS    I+       + +  
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-------MSSN- 96

Query: 125 FFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLS 184
            F  L +L  L   + +L             L NL  L++S+       N     L SL 
Sbjct: 97  -FLGLEQLEHLDFQHSNLKQMSEF--SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 185 VIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQ-VPTLETLDLSYNSLL 243
           V+++  N      +P+    L NLT LDLSQC L  +        + +L+ L++S+N+  
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 212

Query: 244 QGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNL-ENLASVDVSS 287
                 +   +SL+ L+             + +   +LA ++++ 
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 35/188 (18%), Positives = 56/188 (29%), Gaps = 25/188 (13%)

Query: 154 SFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFV-ANLLNLTTLD 212
               +   L L +  L    +     L  L+ + L  N                +L  LD
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 213 LSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPD 272
           LS   +        L +  LE LD  +++L    +                         
Sbjct: 85  LSFNGVI-TMSSNFLGLEQLEHLDFQHSNL--KQMSE---------------------FS 120

Query: 273 SIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYL 332
              +L NL  +D+S  +           L+ L  L  + N F +          RNL +L
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 333 NLSSNDLT 340
           +LS   L 
Sbjct: 181 DLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 30/145 (20%), Positives = 48/145 (33%), Gaps = 5/145 (3%)

Query: 207 NLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPH--FPKNSSLRNLNLKNT 264
           + T L+L    L         ++  L  L LS N L             +SL+ L+L   
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 265 SFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSM-ANLTQLFHLDFSSNHFSDPIPTLRL 323
                +  +   LE L  +D    N  +    S+  +L  L +LD S  H          
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIF 146

Query: 324 YMSRNLNYLNLSSNDLTGGISSNIL 348
               +L  L ++ N        +I 
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIF 171

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.0 bits (208), Expect = 4e-18
 Identities = 51/246 (20%), Positives = 88/246 (35%), Gaps = 17/246 (6%)

Query: 94  PSSLP-RLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA 152
           P  +      L+L           +++I   N F++L  L  L L    +         A
Sbjct: 59  PDGISTNTRLLNLHEN--------QIQIIKVNSFKHLRHLEILQLSRNHIRTIEI---GA 107

Query: 153 MSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLD 212
            + L NL  L L +  L+   N     L  L  + LR+N   S     F   + +L  LD
Sbjct: 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF-NRIPSLRRLD 166

Query: 213 LSQCDLHGKFPEKVLQ-VPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLP 271
           L +        E   + +  L  L+L+  +L    +P+      L  L+L     S   P
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--EIPNLTPLIKLDELDLSGNHLSAIRP 224

Query: 272 DSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNY 331
            S   L +L  + +           +  NL  L  ++ + N+ +  +P        +L  
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL-LPHDLFTPLHHLER 283

Query: 332 LNLSSN 337
           ++L  N
Sbjct: 284 IHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 7/186 (3%)

Query: 157 PNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQC 216
            N ++LNL    +     +   +L  L +++L  NH  + ++  F   L NL TL+L   
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF-NGLANLNTLELFDN 122

Query: 217 DLHGKFPEKVLQ-VPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSI- 274
            L    P      +  L+ L L  N +       F +  SLR L+L        + +   
Sbjct: 123 RLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 275 GNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNL 334
             L NL  ++++ CN    IP  +  L +L  LD S NH S  I         +L  L +
Sbjct: 182 EGLSNLRYLNLAMCNLRE-IPN-LTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWM 238

Query: 335 SSNDLT 340
             + + 
Sbjct: 239 IQSQIQ 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 11/117 (9%)

Query: 75  LQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRE 134
           L  L+ LNL        P  + L +L  LDL S   +S             FQ L  L++
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTPLIKLDELDL-SGNHLSAIRP-------GSFQGLMHLQK 235

Query: 135 LYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDN 191
           L++    +         A   L +L  +NL++  L+   +     L  L  I L  N
Sbjct: 236 LWMIQSQIQVIERN---AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.0 bits (203), Expect = 8e-18
 Identities = 47/252 (18%), Positives = 92/252 (36%), Gaps = 24/252 (9%)

Query: 95  SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS 154
            +L  L TL L + + IS      +I     F  L +L  LYL    L     +      
Sbjct: 73  KNLKNLHTLILINNK-IS------KISP-GAFAPLVKLERLYLSKNQLKELPEK------ 118

Query: 155 FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFV-ANLLNLTTLDL 213
               LQ L +    ++         L  + V+ L  N   S  +       +  L+ + +
Sbjct: 119 MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 214 SQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDS 273
           +  ++    P+ +   P+L  L L  N + +         ++L  L L   S S     S
Sbjct: 179 ADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 274 IGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFS-----DPIPTLRLYMSRN 328
           + N  +L  + +++    + +P  +A+   +  +   +N+ S     D  P        +
Sbjct: 236 LANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294

Query: 329 LNYLNLSSNDLT 340
            + ++L SN + 
Sbjct: 295 YSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 38/207 (18%), Positives = 69/207 (33%), Gaps = 29/207 (14%)

Query: 70  SGLFS-LQYLQSLNLGFTLFYGFPMP----SSLPRLVTLDLSSREPISGFSWRLEIPNFN 124
             +F+ L  +  + LG        +       + +L  + ++    I+       IP   
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA-DTNIT------TIPQGL 190

Query: 125 FFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLS 184
                  L EL+LD   ++        ++  L NL  L LS   +S   N  LAN   L 
Sbjct: 191 P----PSLTELHLDGNKITKVDAA---SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243

Query: 185 VIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHG------KFPEKVLQVPTLETLDLS 238
            + L +N  V   VP  +A+   +  + L   ++          P    +  +   + L 
Sbjct: 244 ELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 301

Query: 239 YNSLLQGSLPH--FPKNSSLRNLNLKN 263
            N +    +    F        + L N
Sbjct: 302 SNPVQYWEIQPSTFRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 32/195 (16%), Positives = 70/195 (35%), Gaps = 23/195 (11%)

Query: 54  LDLSAEPILIGSLENASGLFS-LQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPIS 112
           ++L   P+    +E  +G F  ++ L  + +  T     P     P L  L L       
Sbjct: 150 VELGTNPLKSSGIE--NGAFQGMKKLSYIRIADTNITTIP-QGLPPSLTELHLDGN---- 202

Query: 113 GFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDP 172
               ++   +    + L  L +L L    +S        +++  P+L+ L+L+N  L   
Sbjct: 203 ----KITKVDAASLKGLNNLAKLGLSFNSISAVDNG---SLANTPHLRELHLNNNKLVK- 254

Query: 173 INHHLANLLSLSVIRLRDNH-----AVSCQVPEFVANLLNLTTLDLSQCDL-HGKFPEKV 226
           +   LA+   + V+ L +N+     +     P +     + + + L    + + +     
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

Query: 227 LQ-VPTLETLDLSYN 240
            + V     + L   
Sbjct: 315 FRCVYVRAAVQLGNY 329

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 45/217 (20%), Positives = 76/217 (35%), Gaps = 18/217 (8%)

Query: 125 FFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLS 184
             QN    +   + +  L               N++ L+LS   LS      LA    L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALAS---LRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 185 VIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQ 244
           ++ L  N        +   +L  L TLDL+   +     +++L  P++ETL  + N++ +
Sbjct: 62  LLNLSSNVLYE--TLDL-ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113

Query: 245 GSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR-PIPTSMANLTQ 303
            S          +N+ L N   +       G    +  +D+              A+   
Sbjct: 114 VSCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 304 LFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
           L HL+   N   D    +       L  L+LSSN L 
Sbjct: 171 LEHLNLQYNFIYDVKGQVVF---AKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 80.4 bits (199), Expect = 3e-17
 Identities = 41/270 (15%), Positives = 85/270 (31%), Gaps = 30/270 (11%)

Query: 74  SLQYLQSLNLGFTLFYGFP--MPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTE 131
           +    +   +  +        +  S   +  LDLS           L   +       T+
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN--------PLSQISAADLAPFTK 59

Query: 132 LRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDN 191
           L  L L +  L          +  L  L+ L+L+N  + +     L    S+  +   +N
Sbjct: 60  LELLNLSSNVLYET-----LDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANN 109

Query: 192 HAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFP 251
           +     V    +       + L+   +             ++ LDL  N +   +     
Sbjct: 110 NISR--VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165

Query: 252 KN-SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFS 310
            +  +L +LNL+       +   +     L ++D+SS      +     +   +  +   
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLR 222

Query: 311 SNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
           +N     I    L  S+NL + +L  N   
Sbjct: 223 NNKLVL-IEKA-LRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 76.6 bits (189), Expect = 5e-16
 Identities = 43/267 (16%), Positives = 86/267 (32%), Gaps = 24/267 (8%)

Query: 74  SLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELR 133
               L+ LNL   + Y      SL  L TLDL++                        + 
Sbjct: 56  PFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN-------------NYVQELLVGPSIE 102

Query: 134 ELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHA 193
            L+  N ++S                + + L+N  ++   +        +  + L+ N  
Sbjct: 103 TLHAANNNISRVSCS------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

Query: 194 VSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKN 253
            +    E  A+   L  L+L    ++     + +    L+TLDLS N L     P F   
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLAFMG-PEFQSA 213

Query: 254 SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR-PIPTSMANLTQLFHLDFSSN 312
           + +  ++L+N      +  ++   +NL   D+    F    +    +   ++  +   + 
Sbjct: 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

Query: 313 HFSDPIPTLRLYMSRNLNYLNLSSNDL 339
                       +    +Y      DL
Sbjct: 273 KKLTGQNEEECTVPTLGHYGAYCCEDL 299

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 11/142 (7%)

Query: 199 PEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRN 258
            E   N        ++   L             ++ LDLS N L Q S       + L  
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 259 LNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPI 318
           LNL +          + +L  L ++D+++          +     +  L  ++N+    I
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN----I 111

Query: 319 PTLRLYMSRNLNYLNLSSNDLT 340
             +     +    + L++N +T
Sbjct: 112 SRVSCSRGQGKKNIYLANNKIT 133

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 246 SLPHFPKN-SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQL 304
           ++    +N +  +   + ++S    L     +  N+  +D+S    ++     +A  T+L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 305 FHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
             L+ SSN   + +    L     L  L+L++N + 
Sbjct: 61  ELLNLSSNVLYETLDLESL---STLRTLDLNNNYVQ 93

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.7 bits (202), Expect = 2e-17
 Identities = 50/246 (20%), Positives = 88/246 (35%), Gaps = 17/246 (6%)

Query: 94  PSSLP-RLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA 152
           P  +P     L+L            +++   + F++L  L  L L    +         A
Sbjct: 70  PQGIPSNTRYLNLMEN--------NIQMIQADTFRHLHHLEVLQLGRNSIRQIEV---GA 118

Query: 153 MSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLD 212
            + L +L  L L +  L+   +     L  L  + LR+N   S     F   + +L  LD
Sbjct: 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF-NRVPSLMRLD 177

Query: 213 LSQCDLHGKFPEKVLQ-VPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLP 271
           L +        E   + +  L+ L+L   ++    +P+      L  L +    F    P
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--DMPNLTPLVGLEELEMSGNHFPEIRP 235

Query: 272 DSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNY 331
            S   L +L  + V +   +     +   L  L  L+ + N+ S  +P       R L  
Sbjct: 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVE 294

Query: 332 LNLSSN 337
           L+L  N
Sbjct: 295 LHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 11/188 (5%)

Query: 157 PNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQC 216
            N + LNL    +         +L  L V++L  N     +V  F   L +L TL+L   
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF-NGLASLNTLELFDN 133

Query: 217 DLHGKFPEKVLQ-VPTLETLDLSYNSLLQGSLPH--FPKNSSLRNLNLKNTSFSGKLPDS 273
            L    P    + +  L  L L  N +   S+P   F +  SL  L+L        + + 
Sbjct: 134 WLT-VIPSGAFEYLSKLRELWLRNNPI--ESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190

Query: 274 I-GNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYL 332
               L NL  +++  CN    +P  +  L  L  L+ S NHF + I     +   +L  L
Sbjct: 191 AFEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKL 247

Query: 333 NLSSNDLT 340
            + ++ ++
Sbjct: 248 WVMNSQVS 255

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 43/175 (24%), Positives = 67/175 (38%), Gaps = 21/175 (12%)

Query: 93  MPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA 152
               L +L  L L +  PI        IP+   F  +  L  L L  +      +E   A
Sbjct: 142 AFEYLSKLRELWLRNN-PIE------SIPS-YAFNRVPSLMRLDLGELKKLEYISE--GA 191

Query: 153 MSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFV-ANLLNLTTL 211
              L NL+ LNL  C + D    +L  L+ L  + +  NH     +       L +L  L
Sbjct: 192 FEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPE--IRPGSFHGLSSLKKL 247

Query: 212 DLSQCDLHGKFPEKVLQ-VPTLETLDLSYNSLLQGSLPH--FPKNSSLRNLNLKN 263
            +    +           + +L  L+L++N+L   SLPH  F     L  L+L +
Sbjct: 248 WVMNSQVS-LIERNAFDGLASLVELNLAHNNL--SSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.7 bits (111), Expect = 7e-06
 Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 12/124 (9%)

Query: 69  ASGLFS-LQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQ 127
           + G F  L  L+ LNLG       P  + L  L  L++ S                  F 
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEM-SGNHFPEIRPGS-------FH 239

Query: 128 NLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIR 187
            L+ L++L++ N  +S        A   L +L  LNL++  LS   +     L  L  + 
Sbjct: 240 GLSSLKKLWVMNSQVSLIERN---AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296

Query: 188 LRDN 191
           L  N
Sbjct: 297 LHHN 300

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.8 bits (196), Expect = 2e-16
 Identities = 45/279 (16%), Positives = 89/279 (31%), Gaps = 31/279 (11%)

Query: 58  AEPILIG-SLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSW 116
            E I +   ++      +       NL           + L  +  +  ++ +       
Sbjct: 2   GETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSD------- 54

Query: 117 RLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHH 176
              I +    Q L  + +L+L+   L+       K ++ L NL  L L    + D  +  
Sbjct: 55  ---IKSVQGIQYLPNVTKLFLNGNKLTD-----IKPLTNLKNLGWLFLDENKIKDLSS-- 104

Query: 177 LANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLD 236
           L +L  L  + L  N          + +L  L +L L    +       + ++  L+TL 
Sbjct: 105 LKDLKKLKSLSLEHNG---ISDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLS 159

Query: 237 LSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPD--SIGNLENLASVDVSSCNFTRPI 294
           L  N +    +      + L+NL L        + D  ++  L+NL  +++ S       
Sbjct: 160 LEDNQI--SDIVPLAGLTKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKP 213

Query: 295 PTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLN 333
               +NL     +  +      P            N   
Sbjct: 214 INHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKW 252

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.8 bits (178), Expect = 3e-14
 Identities = 43/243 (17%), Positives = 89/243 (36%), Gaps = 32/243 (13%)

Query: 95  SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS 154
            +    +  +L  +           + +      L  + ++  +N D+        + + 
Sbjct: 18  DAFAETIKDNLKKKS----------VTDAVTQNELNSIDQIIANNSDIKS-----VQGIQ 62

Query: 155 FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLS 214
           +LPN+  L L+   L+D     L NL +L  + L +N          + +L  L +L L 
Sbjct: 63  YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL---SSLKDLKKLKSLSLE 117

Query: 215 QCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSI 274
              +       ++ +P LE+L L  N +    +    + + L  L+L++   S  +   +
Sbjct: 118 HNGI--SDINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIV-PL 171

Query: 275 GNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNL 334
             L  L ++ +S  + +     ++A L  L  L+  S           +    NL   N 
Sbjct: 172 AGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQ----ECLNKPINHQSNLVVPNT 225

Query: 335 SSN 337
             N
Sbjct: 226 VKN 228

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.8 bits (165), Expect = 1e-12
 Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 156 LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQ 215
                  NL    ++D +      L S+  I   ++   S    + +  L N+T L L+ 
Sbjct: 20  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNG 74

Query: 216 CDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIG 275
             L    P   L    L  L L  N +    L        L++L+L++   S  + + + 
Sbjct: 75  NKLTDIKPLTNL--KNLGWLFLDENKIK--DLSSLKDLKKLKSLSLEHNGIS-DI-NGLV 128

Query: 276 NLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLS 335
           +L  L S+ + +   T    T ++ LT+L  L    N  SD +P   L     L  L LS
Sbjct: 129 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLS 183

Query: 336 SNDLT 340
            N ++
Sbjct: 184 KNHIS 188

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 66/269 (24%), Positives = 100/269 (37%), Gaps = 33/269 (12%)

Query: 74  SLQYLQSLNLGFTLFYGFP--MPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTE 131
           ++  L  L L        P  +  + P+L TL +S+          LE    + FQ  T 
Sbjct: 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN--------NLERIEDDTFQATTS 166

Query: 132 LRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDN 191
           L+ L L +  L+         +S +P+L   N+S  LLS      LA  +++  +    N
Sbjct: 167 LQNLQLSSNRLT------HVDLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHN 215

Query: 192 HAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFP 251
                + P  V     LT L L   +L       +L  P L  +DLSYN L +     F 
Sbjct: 216 SINVVRGPVNV----ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 269

Query: 252 KNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSS 311
           K   L  L + N      L      +  L  +D+S  +    +  +     +L +L    
Sbjct: 270 KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDH 327

Query: 312 NHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
           N       TL+L     L  L LS ND  
Sbjct: 328 NSIV----TLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 74.3 bits (183), Expect = 6e-15
 Identities = 51/268 (19%), Positives = 92/268 (34%), Gaps = 29/268 (10%)

Query: 74  SLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELR 133
               +        +++GF    +L     +   +          +         +  ++ 
Sbjct: 22  VFYDVHIDMQTQDVYFGFE-DITLNNQKIVTFKNS--------TMRKLPAALLDSFRQVE 72

Query: 134 ELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHA 193
            L L+++ +    T    A ++   +Q L +    +     H   N+  L+V+ L  N  
Sbjct: 73  LLNLNDLQIEEIDTY---AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 194 VSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQ-VPTLETLDLSYNSLLQGSLPHFPK 252
            S     F  N   LTTL +S  +L  +  +   Q   +L+ L LS N L    L   P 
Sbjct: 130 SSLPRGIF-HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP- 186

Query: 253 NSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSN 312
             SL + N+     S     ++     +  +D S  +           LT    L    N
Sbjct: 187 --SLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELT---ILKLQHN 236

Query: 313 HFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
           + +D    L  Y    L  ++LS N+L 
Sbjct: 237 NLTD-TAWLLNY--PGLVEVDLSYNELE 261

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 51/305 (16%), Positives = 100/305 (32%), Gaps = 38/305 (12%)

Query: 54  LDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFP--MPSSLPRLVTLDLSSREPI 111
            D+  +            + +L   + +    +     P  +  S  ++  L+L+     
Sbjct: 24  YDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL--- 79

Query: 112 SGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSD 171
                ++E  +   F     +++LY+    +             +P L VL L    LS 
Sbjct: 80  -----QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH---VFQNVPLLTVLVLERNDLSS 131

Query: 172 PINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQC--------------- 216
                  N   L+ + + +N+    +   F     +L  L LS                 
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLSSNRLTHVDLSLIPSLFH 190

Query: 217 -DLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIG 275
            ++       +     +E LD S+NS+   ++   P N  L  L L++ + +      + 
Sbjct: 191 ANVSYNLLSTLAIPIAVEELDASHNSI---NVVRGPVNVELTILKLQHNNLTD--TAWLL 245

Query: 276 NLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLS 335
           N   L  VD+S     + +      + +L  L  S+N     +          L  L+LS
Sbjct: 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLY-GQPIPTLKVLDLS 303

Query: 336 SNDLT 340
            N L 
Sbjct: 304 HNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 34/182 (18%), Positives = 55/182 (30%), Gaps = 20/182 (10%)

Query: 72  LFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTE 131
           L     ++ L+                 L  L L              + +  +  N   
Sbjct: 201 LAIPIAVEELDASHNSINVVR-GPVNVELTILKLQ----------HNNLTDTAWLLNYPG 249

Query: 132 LRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDN 191
           L E+ L   +L             +  L+ L +SN  L   +N +   + +L V+ L  N
Sbjct: 250 LVEVDLSYNELEKIMYH---PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 305

Query: 192 HAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFP 251
           H +   V         L  L L    +            TL+ L LS+N     SL    
Sbjct: 306 HLLH--VERNQPQFDRLENLYLDHNSIV-TLKLSTH--HTLKNLTLSHNDWDCNSLRALF 360

Query: 252 KN 253
           +N
Sbjct: 361 RN 362

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 9/91 (9%), Positives = 27/91 (29%), Gaps = 1/91 (1%)

Query: 250 FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDF 309
              +    ++++   +           L N   V   +    +     + +  Q+  L+ 
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 310 SSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
           +     + I T     +  +  L +  N + 
Sbjct: 77  NDLQIEE-IDTYAFAYAHTIQKLYMGFNAIR 106

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 12/118 (10%), Positives = 33/118 (27%), Gaps = 1/118 (0%)

Query: 223 PEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLAS 282
              +        + +   +            ++ + +  KN++        + +   +  
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 283 VDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
           ++++          + A    +  L    N     +P         L  L L  NDL+
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLS 130

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 77.2 bits (190), Expect = 8e-16
 Identities = 45/216 (20%), Positives = 76/216 (35%), Gaps = 18/216 (8%)

Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSV 185
            QN    +   + +  L               N++ L+LS   LS      LA    L +
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALAS---LRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 186 IRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQG 245
           + L  N        +   +L  L TLDL+   +     +++L  P++ETL  + N++ + 
Sbjct: 63  LNLSSNVLYE--TLDL-ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRV 114

Query: 246 SLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR-PIPTSMANLTQL 304
           S          +N+ L N   +       G    +  +D+              A+   L
Sbjct: 115 SCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 305 FHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
            HL+   N   D    +       L  L+LSSN L 
Sbjct: 172 EHLNLQYNFIYDVKGQVVF---AKLKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 76.8 bits (189), Expect = 1e-15
 Identities = 45/278 (16%), Positives = 91/278 (32%), Gaps = 24/278 (8%)

Query: 72  LFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTE 131
           L     L+ LNL   + Y      SL  L TLDL++                        
Sbjct: 54  LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN-------------YVQELLVGPS 100

Query: 132 LRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDN 191
           +  L+  N ++S          S     + + L+N  ++   +        +  + L+ N
Sbjct: 101 IETLHAANNNISRVSC------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 192 HAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFP 251
              +    E  A+   L  L+L    ++     + +    L+TLDLS N L     P F 
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLAFMG-PEFQ 211

Query: 252 KNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR-PIPTSMANLTQLFHLDFS 310
             + +  ++L+N      +  ++   +NL   D+    F    +    +   ++  +   
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 311 SNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNIL 348
           +             +    +Y      DL    +  ++
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI 308

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 38/266 (14%), Positives = 84/266 (31%), Gaps = 38/266 (14%)

Query: 93  MPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA 152
           +  +  R     ++           L+    +  Q+   ++EL L    LS         
Sbjct: 5   IKQNGNRYKIEKVTDS--------SLKQALASLRQSAWNVKELDLSGNPLSQISAA---D 53

Query: 153 MSFLPNLQVLNLSNCLLSDPIN-----------------HHLANLLSLSVIRLRDNHAVS 195
           ++    L++LNLS+ +L + ++                   L    S+  +   +N+   
Sbjct: 54  LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR 113

Query: 196 CQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKN-S 254
                          + L+   +             ++ LDL  N +   +      +  
Sbjct: 114 VSCSRGQ----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 255 SLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHF 314
           +L +LNL+       +   +     L ++D+SS      +     +   +  +   +N  
Sbjct: 170 TLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL 226

Query: 315 SDPIPTLRLYMSRNLNYLNLSSNDLT 340
              I    L  S+NL + +L  N   
Sbjct: 227 VL-IEKA-LRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 11/143 (7%)

Query: 198 VPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLR 257
           + E   N        ++   L             ++ LDLS N L Q S       + L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 258 NLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDP 317
            LNL +          + +L  L ++D+++          +     +  L  ++N+    
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN---- 110

Query: 318 IPTLRLYMSRNLNYLNLSSNDLT 340
           I  +     +    + L++N +T
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKIT 133

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 40/304 (13%), Positives = 85/304 (27%), Gaps = 40/304 (13%)

Query: 63  IGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPN 122
           I ++  A    S   L+ LNL +   Y         +L TLDLSS + ++          
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNK-LAFMG------- 207

Query: 123 FNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLS-NCLLSDPINHHLANLL 181
              FQ+   +  + L N  L        KA+ F  NL+  +L  N      +    +   
Sbjct: 208 -PEFQSAAGVTWISLRNNKL----VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 182 SLSVIRLRDNHAVSCQVPE---------------------FVANLLNLTTLDLSQCDLHG 220
            +  +  +    ++ Q  E                     F   L+ L   + +     G
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322

Query: 221 ----KFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGN 276
               +   +         +D               +  +   L  K  +   ++ +    
Sbjct: 323 SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

Query: 277 LENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSS 336
              L    +        +  +    + L  L      + +     +   +  +   ++  
Sbjct: 383 HAEL-DGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQ 441

Query: 337 NDLT 340
           +  T
Sbjct: 442 HKET 445

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 47/251 (18%), Positives = 89/251 (35%), Gaps = 23/251 (9%)

Query: 95  SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS 154
             L  L  L L + + IS      +I     F  L +L++LY+    L            
Sbjct: 75  KGLQHLYALVLVNNK-IS------KIHE-KAFSPLRKLQKLYISKNHLVEIPPN------ 120

Query: 155 FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLS 214
              +L  L + +  +        + L +++ I +  N   +        + L L  L +S
Sbjct: 121 LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180

Query: 215 QCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSI 274
           +  L    P+ +    TL  L L +N +    L    + S L  L L +         S+
Sbjct: 181 EAKLT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237

Query: 275 GNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFS-----DPIPTLRLYMSRNL 329
             L  L  + + +   +R +P  + +L  L  +   +N+ +     D  P          
Sbjct: 238 SFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY 296

Query: 330 NYLNLSSNDLT 340
           N ++L +N + 
Sbjct: 297 NGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 28/206 (13%)

Query: 70  SGLFS-LQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF 125
            G+FS L+ +  + +G                 +L  L +S          +L     + 
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA--------KLTGIPKDL 191

Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSV 185
            + L EL   +LD+  +     E    +     L  L L +  +    N  L+ L +L  
Sbjct: 192 PETLNEL---HLDHNKIQAIELE---DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245

Query: 186 IRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLH----GKFP--EKVLQVPTLETLDLSY 239
           + L +N      VP  + +L  L  + L   ++       F      ++      + L  
Sbjct: 246 LHLDNNKLSR--VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 240 NSLLQGSLPH--FPKNSSLRNLNLKN 263
           N +    +    F   +    +   N
Sbjct: 304 NPVPYWEVQPATFRCVTDRLAIQFGN 329

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.5 bits (188), Expect = 1e-15
 Identities = 67/269 (24%), Positives = 101/269 (37%), Gaps = 33/269 (12%)

Query: 74  SLQYLQSLNLGFTLFYGFP--MPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTE 131
           ++  L  L L        P  +  + P+L TL +S+          LE    + FQ  T 
Sbjct: 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN--------NLERIEDDTFQATTS 172

Query: 132 LRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDN 191
           L+ L L +  L+         +S +P+L   N+S  LLS      LA  +++  +    N
Sbjct: 173 LQNLQLSSNRLT------HVDLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHN 221

Query: 192 HAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFP 251
                + P  V     LT L L   +L       +L  P L  +DLSYN L +     F 
Sbjct: 222 SINVVRGPVNV----ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275

Query: 252 KNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSS 311
           K   L  L + N      L      +  L  +D+S  +    +  +     +L +L    
Sbjct: 276 KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDH 333

Query: 312 NHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
           N     I TL+L     L  L LS ND  
Sbjct: 334 NS----IVTLKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.5 bits (175), Expect = 8e-14
 Identities = 50/268 (18%), Positives = 86/268 (32%), Gaps = 30/268 (11%)

Query: 75  LQYLQSLNLGFTLFYGFP--MPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTEL 132
              +Q L +GF      P  +  ++P L  L L            L       F N  +L
Sbjct: 98  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN--------DLSSLPRGIFHNTPKL 149

Query: 133 RELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNH 192
             L + N +L     +         +LQ L LS+  L+      L+ + SL    +  N 
Sbjct: 150 TTLSMSNNNLERIEDD---TFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 203

Query: 193 AVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPK 252
             +      +A  + +  LD S   ++      V     L  L L +N+L          
Sbjct: 204 LST------LAIPIAVEELDASHNSIN-VVRGPVNV--ELTILKLQHNNLT--DTAWLLN 252

Query: 253 NSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSN 312
              L  ++L        +      ++ L  + +S+      +      +  L  LD S N
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 311

Query: 313 HFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
           H    +   +      L  L L  N + 
Sbjct: 312 HLLH-VERNQPQFD-RLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 69.2 bits (169), Expect = 4e-13
 Identities = 46/224 (20%), Positives = 87/224 (38%), Gaps = 20/224 (8%)

Query: 119 EIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLA 178
           ++        L   + +   N  +          +     +++LNL++  + +   +  A
Sbjct: 40  DVYFGFEDITLNNQKIVTFKNSTMRKLPAA---LLDSFRQVELLNLNDLQIEEIDTYAFA 96

Query: 179 NLLSLSVIRLRDNHAVSCQVPEFV-ANLLNLTTLDLSQCDLHGKFPEKVLQ-VPTLETLD 236
              ++  + +  N      +P  V  N+  LT L L + DL    P  +    P L TL 
Sbjct: 97  YAHTIQKLYMGFNAIRY--LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 153

Query: 237 LSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPT 296
           +S N+L +     F   +SL+NL L +   +  +      + +L   +VS         +
Sbjct: 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYNLL-----S 205

Query: 297 SMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
           ++A    +  LD S N     I  +R  ++  L  L L  N+LT
Sbjct: 206 TLAIPIAVEELDASHNS----INVVRGPVNVELTILKLQHNNLT 245

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.3 bits (164), Expect = 2e-12
 Identities = 51/285 (17%), Positives = 98/285 (34%), Gaps = 37/285 (12%)

Query: 74  SLQYLQSLNLGFTLFYGFP--MPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTE 131
           +L   + +    +     P  +  S  ++  L+L+          ++E  +   F     
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL--------QIEEIDTYAFAYAHT 100

Query: 132 LRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDN 191
           +++LY+    +             +P L VL L    LS        N   L+ + + +N
Sbjct: 101 IQKLYMGFNAIRYLPPH---VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157

Query: 192 HAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLP--- 248
           +    +  +      +L  L LS   L       ++  P+L   ++SYN L   ++P   
Sbjct: 158 NLERIE-DDTFQATTSLQNLQLSSNRLT-HVDLSLI--PSLFHANVSYNLLSTLAIPIAV 213

Query: 249 -------------HFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIP 295
                          P N  L  L L++ + +      + N   L  VD+S     + + 
Sbjct: 214 EELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY 271

Query: 296 TSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
                + +L  L  S+N     +      +   L  L+LS N L 
Sbjct: 272 HPFVKMQRLERLYISNNRLVA-LNLYGQPIP-TLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 36/207 (17%), Positives = 63/207 (30%), Gaps = 22/207 (10%)

Query: 70  SGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNL 129
           S L     ++ L+                 L  L L              + +  +  N 
Sbjct: 205 STLAIPIAVEELDASHNSINVVR-GPVNVELTILKLQ----------HNNLTDTAWLLNY 253

Query: 130 TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLR 189
             L E+ L   +L             +  L+ L +SN  L   +N +   + +L V+ L 
Sbjct: 254 PGLVEVDLSYNELEKIMYH---PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS 309

Query: 190 DNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPH 249
            NH +   V         L  L L    +            TL+ L LS+N     SL  
Sbjct: 310 HNHLLH--VERNQPQFDRLENLYLDHNSIV-TLKLSTH--HTLKNLTLSHNDWDCNSLRA 364

Query: 250 FPKNSSLRNLNLKNTSFSGKLPDSIGN 276
             +N  +    + +     K+   + +
Sbjct: 365 LFRN--VARPAVDDADQHCKIDYQLEH 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 3/111 (2%)

Query: 232 LETLDLSYNSLLQGSLPHFPKN--SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCN 289
               D+  +   Q     F     ++ + +  KN++        + +   +  ++++   
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86

Query: 290 FTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
                  + A    +  L    N     +P         L  L L  NDL+
Sbjct: 87  IEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLS 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 9/90 (10%), Positives = 27/90 (30%), Gaps = 1/90 (1%)

Query: 251 PKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFS 310
             +    ++++   +           L N   V   +    +     + +  Q+  L+ +
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83

Query: 311 SNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
                + I T     +  +  L +  N + 
Sbjct: 84  DLQIEE-IDTYAFAYAHTIQKLYMGFNAIR 112

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 75.7 bits (186), Expect = 3e-15
 Identities = 54/253 (21%), Positives = 83/253 (32%), Gaps = 52/253 (20%)

Query: 100 LVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNL 159
              L++      +       +P+     ++T L    + + +L+             P L
Sbjct: 42  NAVLNVGESGLTT-------LPD-CLPAHITTL---VIPDNNLTSLPAL-------PPEL 83

Query: 160 QVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLH 219
           + L +S   L+  +      LL LS+      H          A    L  L +    L 
Sbjct: 84  RTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTH--------LPALPSGLCKLWIFGNQLT 134

Query: 220 GKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLEN 279
              P      P L+ L +S N L   SLP  P  S L  L   N   +  LP     L+ 
Sbjct: 135 -SLPV---LPPGLQELSVSDNQL--ASLPALP--SELCKLWAYNNQLT-SLPMLPSGLQE 185

Query: 280 LASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLR-LYMSRN---------- 328
           L    VS       +PT  + L +L+  +            L+ L +S N          
Sbjct: 186 L---SVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPS 241

Query: 329 -LNYLNLSSNDLT 340
            L  L +S N LT
Sbjct: 242 ELKELMVSGNRLT 254

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 58/248 (23%), Positives = 79/248 (31%), Gaps = 51/248 (20%)

Query: 94  PSSLPRLVTLDLSSREPISGFSWRL-EIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA 152
           P+  P L TL++S          +L  +P       L EL         L          
Sbjct: 77  PALPPELRTLEVSGN--------QLTSLPVL--PPGLLELSIFSNPLTHLP--------- 117

Query: 153 MSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLD 212
            +    L  L +    L+  +      L  LS   + DN     Q+    A    L  L 
Sbjct: 118 -ALPSGLCKLWIFGNQLTS-LPVLPPGLQELS---VSDN-----QLASLPALPSELCKLW 167

Query: 213 LSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPD 272
                L    P        L+ L +S N L   SLP  P  S L  L   N   +  LP 
Sbjct: 168 AYNNQLT-SLPM---LPSGLQELSVSDNQL--ASLPTLP--SELYKLWAYNNRLT-SLPA 218

Query: 273 SIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYL 332
               L+ L    VS    T  +P   + L     L  S N  +  +P L       L  L
Sbjct: 219 LPSGLKEL---IVSGNRLTS-LPVLPSELK---ELMVSGNRLTS-LPML----PSGLLSL 266

Query: 333 NLSSNDLT 340
           ++  N LT
Sbjct: 267 SVYRNQLT 274

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 38/186 (20%), Positives = 59/186 (31%), Gaps = 29/186 (15%)

Query: 155 FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLS 214
                 VLN+    L+   +   A++ +L    + DN      +    A    L TL++S
Sbjct: 38  LNNGNAVLNVGESGLTTLPDCLPAHITTLV---IPDN-----NLTSLPALPPELRTLEVS 89

Query: 215 QCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSI 274
              L    P     +  L              LP  P    L  L +     +  LP   
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLT-----HLPALPSG--LCKLWIFGNQLT-SLPVLP 140

Query: 275 GNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNL 334
             L+ L    VS       +P   + L     L   +N  +  +P L       L  L++
Sbjct: 141 PGLQEL---SVSDNQLAS-LPALPSELC---KLWAYNNQLTS-LPML----PSGLQELSV 188

Query: 335 SSNDLT 340
           S N L 
Sbjct: 189 SDNQLA 194

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.2 bits (138), Expect = 3e-09
 Identities = 52/292 (17%), Positives = 92/292 (31%), Gaps = 49/292 (16%)

Query: 56  LSAEPILIGSLENASGLF--------SLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSS 107
           L++ P+L   L   S               L  L +        P     P L  L +S 
Sbjct: 93  LTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLP--VLPPGLQELSVSD 150

Query: 108 REPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNC 167
            +  S       +P        +EL +L+  N  L+               LQ L++S+ 
Sbjct: 151 NQLAS-------LPA-----LPSELCKLWAYNNQLTSLPML-------PSGLQELSVSDN 191

Query: 168 LLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVL 227
            L+  +    + L  L      +N     ++    A    L  L +S   L    P    
Sbjct: 192 QLAS-LPTLPSELYKLW---AYNN-----RLTSLPALPSGLKELIVSGNRL-TSLPV--- 238

Query: 228 QVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSS 287
               L+ L +S N L   SLP  P  S L +L++     + +LP+S+ +L +  +V++  
Sbjct: 239 LPSELKELMVSGNRL--TSLPMLP--SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293

Query: 288 CNFTRPIPTSMANLTQLFHLD--FSSNHFSDPIPTLRLYMSRNLNYLNLSSN 337
              +     ++  +T              +                  L   
Sbjct: 294 NPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPA 345

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.0 bits (179), Expect = 9e-15
 Identities = 49/227 (21%), Positives = 74/227 (32%), Gaps = 17/227 (7%)

Query: 128 NLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIR 187
               L+ L +    +  R       +  +  LQ L L N  ++      L       +  
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 188 LRDNHAVSCQVPEFVANL-----LNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSL 242
           L   +        ++A L       L  L ++Q        E+V   P L TLDLS N  
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185

Query: 243 LQG----SLPHFPKNSSLRNLNLKN---TSFSGKLPDSIGNLENLASVDVSSCNFTR-PI 294
           L      S     K  +L+ L L+N    + SG           L  +D+S  +      
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 295 PTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341
             S    +QL  L+ S          L       L+ L+LS N L  
Sbjct: 246 APSCDWPSQLNSLNLSFTGLKQVPKGL----PAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.9 bits (145), Expect = 3e-10
 Identities = 58/260 (22%), Positives = 85/260 (32%), Gaps = 21/260 (8%)

Query: 68  NASGLFSLQYLQSLNLGFT--LFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNF 125
           +     SL+ L          + +G      +  L  L L + E     +     P    
Sbjct: 63  DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE----VTGTAPPPLLEA 118

Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFL-PNLQVLNLSNCLLSDPINHHLANLLSLS 184
                +L  L L NV  + R     +   +L P L+VL+++     +     +    +LS
Sbjct: 119 --TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176

Query: 185 VIRLRDN------HAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLS 238
            + L DN        +S   P     L  L   +       G           L+ LDLS
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236

Query: 239 YNSLLQG-SLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTS 297
           +NSL      P     S L +LNL  T            L  L   D+S     R  P S
Sbjct: 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVL---DLSYNRLDR-NP-S 291

Query: 298 MANLTQLFHLDFSSNHFSDP 317
              L Q+ +L    N F D 
Sbjct: 292 PDELPQVGNLSLKGNPFLDS 311

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.2 bits (175), Expect = 3e-14
 Identities = 47/209 (22%), Positives = 78/209 (37%), Gaps = 6/209 (2%)

Query: 130 TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLR 189
              + ++L    +S        +     NL +L L + +L+         L  L  + L 
Sbjct: 32  AASQRIFLHGNRISHVPA---ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 190 DNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQ-VPTLETLDLSYNSLLQGSLP 248
           DN  +    P     L  L TL L +C L  +    + + +  L+ L L  N+L      
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 249 HFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLD 308
            F    +L +L L     S     +   L +L  + +         P +  +L +L  L 
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 309 FSSNHFSDPIPTLRLYMSRNLNYLNLSSN 337
             +N+ S  +PT  L   R L YL L+ N
Sbjct: 208 LFANNLSA-LPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.2 bits (157), Expect = 7e-12
 Identities = 43/191 (22%), Positives = 68/191 (35%), Gaps = 11/191 (5%)

Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLS-NCLLSDPINHHLANLLSLS 184
           F+    L  L+L +  L+        A + L  L+ L+LS N  L          L  L 
Sbjct: 52  FRACRNLTILWLHSNVLARIDA---AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108

Query: 185 VIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQ-VPTLETLDLSYNSLL 243
            + L            F   L  L  L L    L    P+   + +  L  L L  N + 
Sbjct: 109 TLHLDRCGLQELGPGLF-RGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRI- 165

Query: 244 QGSLPH--FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANL 301
             S+P   F    SL  L L     +   P +  +L  L ++ + + N +     ++A L
Sbjct: 166 -SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224

Query: 302 TQLFHLDFSSN 312
             L +L  + N
Sbjct: 225 RALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 37/162 (22%), Positives = 52/162 (32%), Gaps = 7/162 (4%)

Query: 182 SLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQ-VPTLETLDLSYN 240
           +   I L  N         F     NLT L L    L  +        +  LE LDLS N
Sbjct: 33  ASQRIFLHGNRISHVPAASF-RACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDN 90

Query: 241 SLLQGSLP--HFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSM 298
           + L+ S+    F     L  L+L         P     L  L  + +           + 
Sbjct: 91  AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 299 ANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
            +L  L HL    N  S  +P        +L+ L L  N + 
Sbjct: 150 RDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 39/153 (25%), Positives = 52/153 (33%), Gaps = 22/153 (14%)

Query: 95  SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDN---VDLSGRRTEWCK 151
             L RL TL L  R  +       E+     F+ L  L+ LYL +     L         
Sbjct: 102 HGLGRLHTLHLD-RCGLQ------ELGP-GLFRGLAALQYLYLQDNALQALPDD------ 147

Query: 152 AMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFV-ANLLNLTT 210
               L NL  L L    +S         L SL  + L  N      V      +L  L T
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH--VHPHAFRDLGRLMT 205

Query: 211 LDLSQCDLHGKFPEKVLQ-VPTLETLDLSYNSL 242
           L L   +L    P + L  +  L+ L L+ N  
Sbjct: 206 LYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.5 bits (173), Expect = 5e-14
 Identities = 45/246 (18%), Positives = 90/246 (36%), Gaps = 31/246 (12%)

Query: 95  SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS 154
            +L   + +                + +     +L  +  L      ++       + + 
Sbjct: 16  PALANAIKIAAGKSN----------VTDTVTQADLDGITTLSAFGTGVTT-----IEGVQ 60

Query: 155 FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLS 214
           +L NL  L L +  ++D     L NL  ++ + L  N     +    +A L ++ TLDL+
Sbjct: 61  YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP---LKNVSAIAGLQSIKTLDLT 115

Query: 215 QCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSI 274
              +    P   L    L+ L L  N +   ++      ++L+ L++ N   S      +
Sbjct: 116 STQITDVTPLAGL--SNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSD--LTPL 169

Query: 275 GNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNL 334
            NL  L ++       +   P  +A+L  L  +   +N  SD  P        NL  + L
Sbjct: 170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANT---SNLFIVTL 224

Query: 335 SSNDLT 340
           ++  +T
Sbjct: 225 TNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.6 bits (168), Expect = 3e-13
 Identities = 45/285 (15%), Positives = 85/285 (29%), Gaps = 34/285 (11%)

Query: 65  SLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFN 124
           ++       +L     +  G +        + L  + TL                +    
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTG----------VTTIE 57

Query: 125 FFQNLTELRELYLDN---VDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLL 181
             Q L  L  L L +    DL+         +  L  +  L LS   L +     +A L 
Sbjct: 58  GVQYLNNLIGLELKDNQITDLAP--------LKNLTKITELELSGNPLKNVSA--IAGLQ 107

Query: 182 SLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNS 241
           S+  + L             +A L NL  L L    +       +  +  L+ L +    
Sbjct: 108 SIKTLDLTSTQITD---VTPLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQ 162

Query: 242 LLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANL 301
           +    L      S L  L   +   S  +   + +L NL  V + +   +   P  +AN 
Sbjct: 163 V--SDLTPLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDVSP--LANT 216

Query: 302 TQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSN 346
           + LF +  ++   ++        +         S   +     S+
Sbjct: 217 SNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISD 261

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 7e-11
 Identities = 50/224 (22%), Positives = 90/224 (40%), Gaps = 30/224 (13%)

Query: 66  LENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNF 125
           + + + L +L  +  L L           + L  + TLDL+S           +I +   
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST----------QITDVTP 124

Query: 126 FQNLTELRELYLDN---VDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLS 182
              L+ L+ LYLD     ++S         ++ L NLQ L++ N  +SD     LANL  
Sbjct: 125 LAGLSNLQVLYLDLNQITNISP--------LAGLTNLQYLSIGNAQVSDLTP--LANLSK 174

Query: 183 LSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSL 242
           L+ ++  DN          +A+L NL  + L    +    P        L  + L+  ++
Sbjct: 175 LTTLKADDNKISD---ISPLASLPNLIEVHLKNNQISDVSPLANT--SNLFIVTLTNQTI 229

Query: 243 LQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVS 286
              + P F  N+ +    +K  S +   P +I +    AS +++
Sbjct: 230 T--NQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLT 271

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.1 bits (162), Expect = 4e-13
 Identities = 23/161 (14%), Positives = 59/161 (36%), Gaps = 8/161 (4%)

Query: 156 LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQ 215
           + +L  + L+N  ++D     +    ++  + + + HA +      ++ L NL  L +  
Sbjct: 43  MNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATN---YNPISGLSNLERLRIMG 97

Query: 216 CDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIG 275
            D+       +  + +L  LD+S+++     L        + +++L        +   + 
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLK 156

Query: 276 NLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSD 316
            L  L S+++            + +  +L  L   S     
Sbjct: 157 TLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.4 bits (155), Expect = 4e-12
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 9/164 (5%)

Query: 178 ANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDL 237
           A + SL+ I L + +         +    N+  L ++        P   L    LE L +
Sbjct: 41  AQMNSLTYITLANINVTDL---TGIEYAHNIKDLTINNIHATNYNPISGL--SNLERLRI 95

Query: 238 SYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTS 297
               +    +P+    +SL  L++ +++    +   I  L  + S+D+S       I   
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MP 154

Query: 298 MANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341
           +  L +L  L+   +   D            LN L   S  + G
Sbjct: 155 LKTLPELKSLNIQFDGVHDYRGIEDF---PKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 28/166 (16%), Positives = 58/166 (34%), Gaps = 17/166 (10%)

Query: 75  LQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRE 134
           +  L  + L                +  L +++          +   N+N    L+ L  
Sbjct: 43  MNSLTYITLANINVTDLTGIEYAHNIKDLTINN----------IHATNYNPISGLSNLER 92

Query: 135 LYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAV 194
           L +   D++  +      +S L +L +L++S+    D I   +  L  ++ I L  N A+
Sbjct: 93  LRIMGKDVTSDKIP---NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 195 SCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYN 240
           +      +  L  L +L++    +H      +   P L  L     
Sbjct: 150 T--DIMPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 7e-08
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 8/143 (5%)

Query: 203 ANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLK 262
           +         L Q            Q+ +L  + L+  ++    L       ++++L + 
Sbjct: 20  STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINV--TDLTGIEYAHNIKDLTIN 74

Query: 263 NTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLR 322
           N   +    + I  L NL  + +   + T     +++ LT L  LD S +   D I T +
Sbjct: 75  NIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT-K 131

Query: 323 LYMSRNLNYLNLSSNDLTGGISS 345
           +     +N ++LS N     I  
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 24/133 (18%)

Query: 66  LENASGLFSLQYLQSLNLGFTLFYGFPMP--SSLPRLVTLDLSSREPISGFSWRLEIPNF 123
             N + +  L  L+ L +         +P  S L  L  LD+S            +    
Sbjct: 78  ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS--------AHDDSIL 129

Query: 124 NFFQNLTELRELYLDN----VDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLAN 179
                L ++  + L       D+          +  LP L+ LN+    + D     + +
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIMP--------LKTLPELKSLNIQFDGVHDYRG--IED 179

Query: 180 LLSLSVIRLRDNH 192
              L+ +      
Sbjct: 180 FPKLNQLYAFSQT 192

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.7 bits (166), Expect = 9e-13
 Identities = 60/280 (21%), Positives = 92/280 (32%), Gaps = 51/280 (18%)

Query: 74  SLQYLQSLNLGFTLFYGFP-MPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTEL 132
              +L+SL          P +P SL  L+  + + +                       L
Sbjct: 89  LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA---------------LSDLPPLL 133

Query: 133 RELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNH 192
             L + N  L          +     L+++++ N  L    +       SL  I   +N 
Sbjct: 134 EYLGVSNNQLEK-----LPELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQ 184

Query: 193 AVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPK 252
                +PE   NL  LT +      L  K P+      +LE++    N L    LP    
Sbjct: 185 LEE--LPEL-QNLPFLTAIYADNNSLK-KLPD---LPLSLESIVAGNNIL--EELPELQN 235

Query: 253 NSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSN 312
              L  +   N      LPD   +LE L   +V     T  +P    +LT L   +   +
Sbjct: 236 LPFLTTIYADNNLLK-TLPDLPPSLEAL---NVRDNYLTD-LPELPQSLTFLDVSENIFS 290

Query: 313 HFSDPIPTLR-LYMSRN-----------LNYLNLSSNDLT 340
             S+  P L  L  S N           L  LN+S+N L 
Sbjct: 291 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 52/230 (22%), Positives = 79/230 (34%), Gaps = 41/230 (17%)

Query: 127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVI 186
           +    L  L      L    TE  +    L +L V N +   LSD           L  +
Sbjct: 88  ELPPHLESLVASCNSL----TELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYL 136

Query: 187 RLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGS 246
            + +N      +PE   N   L  +D+    L  K P+     P+LE +    N L    
Sbjct: 137 GVSNNQLEK--LPEL-QNSSFLKIIDVDNNSLK-KLPD---LPPSLEFIAAGNNQL--EE 187

Query: 247 LPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFH 306
           LP       L  +   N S   KLPD   +LE++      +          + NL  L  
Sbjct: 188 LPELQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNILE--ELPELQNLPFLTT 241

Query: 307 LDFSSNHFS---DPIPTLR-LYMSRN-----------LNYLNLSSNDLTG 341
           +   +N      D  P+L  L +  N           L +L++S N  +G
Sbjct: 242 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG 291

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.9 bits (151), Expect = 7e-11
 Identities = 57/277 (20%), Positives = 93/277 (33%), Gaps = 48/277 (17%)

Query: 74  SLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLS----SREPISGFS------WRLEIPNF 123
               L+ +  G       P   +LP L  +        + P    S          +   
Sbjct: 171 LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEEL 230

Query: 124 NFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSL 183
              QNL  L  +Y DN  L              P+L+ LN+ +  L+D +     +L  L
Sbjct: 231 PELQNLPFLTTIYADNNLLK-------TLPDLPPSLEALNVRDNYLTD-LPELPQSLTFL 282

Query: 184 SVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLL 243
            V     +      + E      NL  L+ S  ++     +     P+LE L++S N L+
Sbjct: 283 DVSENIFS-----GLSEL---PPNLYYLNASSNEIR-SLCD---LPPSLEELNVSNNKLI 330

Query: 244 QGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQ 303
              LP  P    L  L       + ++P+   NL+ L    V         P    ++  
Sbjct: 331 --ELPALPPR--LERLIASFNHLA-EVPELPQNLKQL---HVEYNPLRE-FPDIPESVED 381

Query: 304 LFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
           L       N     +P L     +NL  L++ +N L 
Sbjct: 382 L-----RMNSHLAEVPEL----PQNLKQLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.9 bits (151), Expect = 8e-11
 Identities = 45/225 (20%), Positives = 73/225 (32%), Gaps = 36/225 (16%)

Query: 126 FQNLTELRELYLDNVDLSGR--------RTEWCKAMS--FLPNLQVLNLSNCLLSDPINH 175
            +N+    E Y    +            R      +          L L+N  LS  +  
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88

Query: 176 HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETL 235
              +L SL       N      +PE   +L +L   + +   L           P LE L
Sbjct: 89  LPPHLESLV---ASCNSLTE--LPELPQSLKSLLVDNNNLKALSDLP-------PLLEYL 136

Query: 236 DLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIP 295
            +S N L    LP    +S L+ +++ N S   KLPD   +LE +      +      +P
Sbjct: 137 GVSNNQL--EKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLEE-LP 189

Query: 296 TSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
             + NL  L  +   +N               +L  +   +N L 
Sbjct: 190 -ELQNLPFLTAIYADNNSLKKLPDLP-----LSLESIVAGNNILE 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 55/305 (18%), Positives = 95/305 (31%), Gaps = 64/305 (20%)

Query: 65  SLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFN 124
            LE    L +L +L ++          P       L ++   +            +    
Sbjct: 184 QLEELPELQNLPFLTAIYADNNSLKKLP--DLPLSLESIVAGN----------NILEELP 231

Query: 125 FFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLS 184
             QNL  L  +Y DN  L              P+L+ LN+ +  L+D +     +L  L 
Sbjct: 232 ELQNLPFLTTIYADNNLLK-------TLPDLPPSLEALNVRDNYLTD-LPELPQSLTFLD 283

Query: 185 VIRLRDNH------------AVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTL 232
           V     +             A S ++        +L  L++S   L  + P      P L
Sbjct: 284 VSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRL 339

Query: 233 ETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR 292
           E L  S+N L    +P  P+N  L+ L+++      + PD   ++E+L        +   
Sbjct: 340 ERLIASFNHL--AEVPELPQN--LKQLHVEYNPLR-EFPDIPESVEDL-----RMNSHLA 389

Query: 293 PIPTSMANLT-----------------QLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLS 335
            +P    NL                   +  L  +S    DP        +  L      
Sbjct: 390 EVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDP-YEFAHETTDKLEDDVFE 448

Query: 336 SNDLT 340
            +   
Sbjct: 449 HHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 30/158 (18%)

Query: 197 QVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSL 256
           ++P    N+ + T    +  +     P    +   +    L               +   
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-----------LDRQA 73

Query: 257 RNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSD 316
             L L N   S  LP+   +LE+L    V+SCN    +P    +L  L   + +    SD
Sbjct: 74  HELELNNLGLS-SLPELPPHLESL----VASCNSLTELPELPQSLKSLLVDNNNLKALSD 128

Query: 317 PIPTLR-LYMSRN-------------LNYLNLSSNDLT 340
             P L  L +S N             L  +++ +N L 
Sbjct: 129 LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK 166

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 66.4 bits (162), Expect = 3e-12
 Identities = 46/247 (18%), Positives = 85/247 (34%), Gaps = 20/247 (8%)

Query: 74  SLQYLQSLNLGFTLFYGFPMPS----SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNL 129
           ++ Y    N+       F        SL  L    + S             P    ++  
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD--------VFGFPQSYIYEIF 299

Query: 130 TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLR 189
           + +         +SG R       S +     L+ SN LL+D +  +  +L  L  + L+
Sbjct: 300 SNMNIKNFT---VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356

Query: 190 DNHAVSC-QVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPT-LETLDLSYNSLLQGSL 247
            N      ++ E    + +L  LD+SQ  +     +        L +L++S N L     
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416

Query: 248 PHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHL 307
              P    ++ L+L +      +P  +  LE L  ++V+S             LT L  +
Sbjct: 417 RCLPPR--IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473

Query: 308 DFSSNHF 314
              +N +
Sbjct: 474 WLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 40/286 (13%), Positives = 86/286 (30%), Gaps = 15/286 (5%)

Query: 66  LENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNF 125
            +           +SL++ F     F     +      +L                  + 
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 126 FQNLTE---LRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANL-- 180
              L     L  L L+N++ +         + +   +   ++SN  L   ++    +   
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272

Query: 181 LSLSVIRLRDNHAVSCQVPEFVA--NLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLS 238
            SL  + +    +     P+        N+   + +             ++     LD S
Sbjct: 273 TSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332

Query: 239 YNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIG---NLENLASVDVSSCNFTRPIP 295
            N L      +    + L  L L+      +L         +++L  +D+S  + +    
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391

Query: 296 TSM-ANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
               +    L  L+ SSN  +D I      +   +  L+L SN + 
Sbjct: 392 KGDCSWTKSLLSLNMSSNILTDTIFRC---LPPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 42/234 (17%), Positives = 83/234 (35%), Gaps = 17/234 (7%)

Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSV 185
             +L++LR L + +  +            F   L+ L+LS+  L     H   NL  L  
Sbjct: 41  ILSLSKLRILIISHNRIQYLDIS---VFKFNQELEYLDLSHNKLVKISCHPTVNLKHL-- 95

Query: 186 IRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQG 245
             L  N   +  + +   N+  L  L LS   L       +  +   + L +   +  + 
Sbjct: 96  -DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEK 154

Query: 246 SLPHFPKN---SSLRNLNLKNTSFSGKLPDSIGNLENL------ASVDVSSCNFTRPIPT 296
             P   ++    SL  +   N  F   L  S+  + NL        ++ + C++   I  
Sbjct: 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA 214

Query: 297 SMANLTQLFHLDFSSNHFSDPIPT--LRLYMSRNLNYLNLSSNDLTGGISSNIL 348
            +    +L +L  ++   +       L+L     + Y ++S+  L G +     
Sbjct: 215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.7 bits (158), Expect = 5e-12
 Identities = 44/279 (15%), Positives = 89/279 (31%), Gaps = 34/279 (12%)

Query: 65  SLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFN 124
            ++      +       NL           + L  +  +  ++ +          I +  
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSD----------IKSVQ 62

Query: 125 FFQNLTELRELYLDN---VDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLL 181
             Q L  + +L+L+     D+          ++ L NL  L L    + D  +  L +L 
Sbjct: 63  GIQYLPNVTKLFLNGNKLTDIKP--------LANLKNLGWLFLDENKVKDLSS--LKDLK 112

Query: 182 SLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNS 241
            L  + L  N          + +L  L +L L    +       + ++  L+TL L  N 
Sbjct: 113 KLKSLSLEHNGISD---INGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQ 167

Query: 242 LLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANL 301
           +    +      + L+NL L     S     ++  L+NL  +++ S           +NL
Sbjct: 168 IS--DIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNL 223

Query: 302 TQLFHLDFSSNHFSDP--IPTLRLYMSRNLNYLNLSSND 338
                +  +      P  I     Y   N+ +      +
Sbjct: 224 VVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTN 262

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 42/213 (19%), Positives = 81/213 (38%), Gaps = 21/213 (9%)

Query: 128 NLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIR 187
              E  +  L    ++          + L ++  +  +N  +       +  L +++ + 
Sbjct: 22  AFAETIKDNLKKKSVTD-----AVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLF 74

Query: 188 LRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSL 247
           L  N        + +ANL NL  L L +  +  K    +  +  L++L L +N +    +
Sbjct: 75  LNGNKLTDI---KPLANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGI--SDI 127

Query: 248 PHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHL 307
                   L +L L N   +      +  L  L ++ +     +  +P  +A LT+L +L
Sbjct: 128 NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183

Query: 308 DFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
             S NH SD      L   +NL+ L L S +  
Sbjct: 184 YLSKNHISDLRA---LAGLKNLDVLELFSQECL 213

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.0 bits (156), Expect = 1e-11
 Identities = 45/249 (18%), Positives = 75/249 (30%), Gaps = 32/249 (12%)

Query: 95  SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS 154
                L  L L+S   I+       I   + F +L  L  L L    LS   + W     
Sbjct: 73  QRCVNLQALVLTSNG-IN------TIEE-DSFSSLGSLEHLDLSYNYLSNLSSSW---FK 121

Query: 155 FLPNLQVLNLSNCLLSD-PINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDL 213
            L +L  LNL              ++L  L ++R+ +    +    +  A L  L  L++
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181

Query: 214 SQCDLHGKFPEKVLQ-VPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPD 272
              DL   +  K L+ +  +  L L     +          SS+  L L++T        
Sbjct: 182 DASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240

Query: 273 SIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYL 332
            +   E                  S+       ++  +       +  L       L  L
Sbjct: 241 ELSTGET----------------NSLIKKFTFRNVKITDESLFQVMKLLNQI--SGLLEL 282

Query: 333 NLSSNDLTG 341
             S N L  
Sbjct: 283 EFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 36/196 (18%), Positives = 72/196 (36%), Gaps = 10/196 (5%)

Query: 157 PNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQC 216
             ++ L+LSN  ++   N  L   ++L  + L  N   + +   F ++L +L  LDLS  
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF-SSLGSLEHLDLSYN 110

Query: 217 DLHGKFPEKVLQ-VPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKL----P 271
            L         + + +L  L+L  N     +L      S L  L +              
Sbjct: 111 YLS-NLSSSWFKPLSSLTFLNLLGNPYK--TLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 272 DSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNY 331
                L  L  +++ + +     P S+ ++  + HL          +  + + ++ ++  
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVEC 226

Query: 332 LNLSSNDLTGGISSNI 347
           L L   DL     S +
Sbjct: 227 LELRDTDLDTFHFSEL 242

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 49/277 (17%), Positives = 91/277 (32%), Gaps = 48/277 (17%)

Query: 72  LFSLQYLQSLNLGFTLFYGFP--MPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNL 129
           L     LQ+L L             SSL  L  LDLS           L   + ++F+ L
Sbjct: 72  LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN--------YLSNLSSSWFKPL 123

Query: 130 TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLR 189
           + L  L L                            N   +       ++L  L ++R+ 
Sbjct: 124 SSLTFLNLLG--------------------------NPYKTLGETSLFSHLTKLQILRVG 157

Query: 190 DNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQ-VPTLETLDLSYNSLLQGSLP 248
           +    +    +  A L  L  L++   DL   +  K L+ +  +  L L     +     
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEI 216

Query: 249 HFPKNSSLRNLNLKN--------TSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMAN 300
                SS+  L L++        +  S    +S+       +V ++  +  + +   +  
Sbjct: 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQ 275

Query: 301 LTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSN 337
           ++ L  L+FS N     +P        +L  + L +N
Sbjct: 276 ISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.1 bits (153), Expect = 4e-11
 Identities = 45/299 (15%), Positives = 85/299 (28%), Gaps = 50/299 (16%)

Query: 50  HVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSRE 109
             +  +     I     +  S     +                    + +   L L+   
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRL- 69

Query: 110 PISGFSWRL-EIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLP----NLQVLNL 164
                   L  +P+ N    +T L        +++         +  LP    +L+ L+ 
Sbjct: 70  -------NLSSLPD-NLPPQITVL--------EITQNA------LISLPELPASLEYLDA 107

Query: 165 SNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPE 224
            +  LS  +    A+L  L    + +N      +PE  A L     ++     L    PE
Sbjct: 108 CDNRLST-LPELPASLKHL---DVDNNQLTM--LPELPALL---EYINADNNQLT-MLPE 157

Query: 225 KVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVD 284
                 +LE L +  N L    LP  P++  L  L++        LP       +    +
Sbjct: 158 ---LPTSLEVLSVRNNQL--TFLPELPES--LEALDVSTNLLES-LPAVPVRNHHSEETE 209

Query: 285 VS---SCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
           +      N    IP ++ +L     +    N  S       L         +      +
Sbjct: 210 IFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR-IRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 46/257 (17%), Positives = 81/257 (31%), Gaps = 43/257 (16%)

Query: 75  LQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRE 134
           +     L L        P  +  P++  L+++    IS       +P          L  
Sbjct: 58  INQFSELQLNRLNLSSLP-DNLPPQITVLEITQNALIS-------LPE-----LPASLEY 104

Query: 135 LYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLL-SLSVIRLRDNHA 193
           L   +  LS              +L+ L++ N  L+      L  L   L  I   +N  
Sbjct: 105 LDACDNRLSTLPEL-------PASLKHLDVDNNQLT-----MLPELPALLEYINADNN-- 150

Query: 194 VSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKN 253
              Q+        +L  L +    L    PE      +LE LD+S N L   SLP  P  
Sbjct: 151 ---QLTMLPELPTSLEVLSVRNNQL-TFLPE---LPESLEALDVSTNLL--ESLPAVPVR 201

Query: 254 -----SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLD 308
                 +      +    +  +P++I +L+   ++ +     +  I  S++  T      
Sbjct: 202 NHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260

Query: 309 FSSNHFSDPIPTLRLYM 325
               +FS          
Sbjct: 261 GPRIYFSMSDGQQNTLH 277

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 30/211 (14%), Positives = 60/211 (28%), Gaps = 23/211 (10%)

Query: 127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVI 186
             L    +  L    ++        +   L  +Q  N  N  +       +    +L  +
Sbjct: 16  PGLANAVKQNLGKQSVTD-----LVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKEL 68

Query: 187 RLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGS 246
            L  N          + +L  L  L +++  L        +    L  L L  N L    
Sbjct: 69  HLSHNQISD---LSPLKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDNNELR--D 120

Query: 247 LPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFH 306
                   +L  L+++N      +   +G L  L  +D+     T      +  L ++  
Sbjct: 121 TDSLIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNW 176

Query: 307 LDFSSNHFSDPIPTLRLYMSRNLNYLNLSSN 337
           +D +            +     L   N   +
Sbjct: 177 IDLTGQ----KCVNEPVKYQPELYITNTVKD 203

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 42/226 (18%), Positives = 77/226 (34%), Gaps = 33/226 (14%)

Query: 65  SLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFN 124
           S+ +      L  +Q+ N   +             L  L LS  +          I + +
Sbjct: 30  SVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ----------ISDLS 79

Query: 125 FFQNLTELRELYLDN---VDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLL 181
             ++LT+L EL ++     +L+G              L  L L N  L D  +  L +L 
Sbjct: 80  PLKDLTKLEELSVNRNRLKNLNG---------IPSACLSRLFLDNNELRDTDS--LIHLK 128

Query: 182 SLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNS 241
           +L ++ +R+N   S      +  L  L  LDL   ++        L    +  +DL+   
Sbjct: 129 NLEILSIRNNKLKS---IVMLGFLSKLEVLDLHGNEITNTGGLTRL--KKVNWIDLTGQK 183

Query: 242 LLQGSLPHFPKNSSLRNL-NLKNTSFSGKLPDSIGNLENLASVDVS 286
            +   + + P+      + +      S   P  I N  +     V 
Sbjct: 184 CVNEPVKYQPELYITNTVKDPDGRWIS---PYYISNGGSYVDGCVL 226

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 35/185 (18%), Positives = 60/185 (32%), Gaps = 39/185 (21%)

Query: 156 LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQ 215
           L N    NL    ++D ++     L  +      +++  S      +    NL  L LS 
Sbjct: 18  LANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSL---AGMQFFTNLKELHLSH 72

Query: 216 CDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIG 275
             +    P K L    LE L ++ N L   +      ++ L  L L N          + 
Sbjct: 73  NQISDLSPLKDL--TKLEELSVNRNRLKNLN---GIPSACLSRLFLDNNE--------LR 119

Query: 276 NLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLS 335
           + ++L                   +L  L  L   +N     +    L     L  L+L 
Sbjct: 120 DTDSLI------------------HLKNLEILSIRNNKLKSIVM---LGFLSKLEVLDLH 158

Query: 336 SNDLT 340
            N++T
Sbjct: 159 GNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 18/144 (12%)

Query: 200 EFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNL 259
                L N    +L +  +     +K L    ++  +   +++   SL      ++L+ L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKEL--SGVQNFNGDNSNIQ--SLAGMQFFTNLKEL 68

Query: 260 NLKN---TSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSD 316
           +L +   +  S      + +L  L  + V+            A L+    L   +N   D
Sbjct: 69  HLSHNQISDLSP-----LKDLTKLEELSVNRNRLKNLNGIPSACLS---RLFLDNNELRD 120

Query: 317 PIPTLRLYMSRNLNYLNLSSNDLT 340
                 L   +NL  L++ +N L 
Sbjct: 121 TDS---LIHLKNLEILSIRNNKLK 141

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 39/260 (15%), Positives = 76/260 (29%), Gaps = 47/260 (18%)

Query: 127 QNLTELRELYLDNVDLSGRRTEW-CKAMSFLPNLQVLNLSNCLLSDPINHH--------- 176
                ++E+ L    +      W  + ++   +L++   S+       +           
Sbjct: 29  LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88

Query: 177 -LANLLSLSVIRLRDNHAVSCQVPEFVANLL----NLTTLDLSQCDL------------- 218
            L     L  +RL DN A      E + + L     L  L L    L             
Sbjct: 89  ALLKCPKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147

Query: 219 HGKFPEKVLQVPTLETLDLSYNSLLQGSLPH----FPKNSSLRNLNLKNTSFSGK----- 269
                +K    P L ++    N L  GS+      F  +  L  + +       +     
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207

Query: 270 LPDSIGNLENLASVDVSSCNFT----RPIPTSMANLTQLFHLDFSSNHFSDP-----IPT 320
           L + +   + L  +D+    FT      +  ++ +   L  L  +    S       +  
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267

Query: 321 LRLYMSRNLNYLNLSSNDLT 340
                +  L  L L  N++ 
Sbjct: 268 FSKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 42/206 (20%)

Query: 150 CKAMSFLPNLQVLNLSNCLLSD-------------PINHHLANLLSLSVIRLRDNH--AV 194
              +S    L+ L L N  L                +N    N   L  I    N     
Sbjct: 115 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174

Query: 195 SCQ-VPEFVANLLNLTTLDLSQCDLH----GKFPEKVLQV-PTLETLDLSYNSL------ 242
           S +   +   +   L T+ + Q  +          + L     L+ LDL  N+       
Sbjct: 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 234

Query: 243 -LQGSLPHFPKNSSLRNLNLKNTSFSGK----LPDSIGNLEN--LASVDVSSCNFT---- 291
            L  +L       +LR L L +   S +    + D+   LEN  L ++ +          
Sbjct: 235 ALAIALKS---WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291

Query: 292 RPIPTSMA-NLTQLFHLDFSSNHFSD 316
           R + T +   +  L  L+ + N FS+
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRFSE 317

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.5 bits (144), Expect = 4e-10
 Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 19/174 (10%)

Query: 94  PSSLPRLVT-LDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA 152
           P SLP     LDLS    +S       +        LT L  L L +  L+   +E   A
Sbjct: 34  PQSLPSYTALLDLSHNN-LS------RLRAEWTPTRLTNLHSLLLSHNHLNFISSE---A 83

Query: 153 MSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFV-ANLLNLTTL 211
              +PNL+ L+LS+  L        ++L +L V+ L +NH V   V      ++  L  L
Sbjct: 84  FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV--VDRNAFEDMAQLQKL 141

Query: 212 DLSQCDLHGKFPEKVLQ----VPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNL 261
            LSQ  +  +FP ++++    +P L  LDLS N L +  L    K  +     L
Sbjct: 142 YLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 41/165 (24%), Positives = 57/165 (34%), Gaps = 34/165 (20%)

Query: 182 SLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVL-QVPTLETLDLSYN 240
             +++ L  N+    +       L NL +L LS   L+     +    VP L  LDLS N
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98

Query: 241 SLLQGSLPH--FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSM 298
            L   +L    F    +L  L L N            N  ++  VD            + 
Sbjct: 99  HL--HTLDEFLFSDLQALEVLLLYN------------N--HIVVVD----------RNAF 132

Query: 299 ANLTQLFHLDFSSNHFSDPIPT---LRLYMSRNLNYLNLSSNDLT 340
            ++ QL  L  S N  S   P            L  L+LSSN L 
Sbjct: 133 EDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK 176

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.2 bits (144), Expect = 7e-10
 Identities = 64/332 (19%), Positives = 106/332 (31%), Gaps = 58/332 (17%)

Query: 54  LDLSAEPILIGSLENASGLFSLQYLQSLNLGFT---------LFYGFPMPSSLPRLVTLD 104
           LD+  E +       A  L  LQ  Q + L            +          P L  L+
Sbjct: 8   LDIQCEEL--SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL---RVNPALAELN 62

Query: 105 LS----SREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEW-CKAMSFLPNL 159
           L         +      L+ P+        ++++L L N  L+G         +  LP L
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPS-------CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL 115

Query: 160 QVLNLSNCLLSDPINHHLANLL-----SLSVIRLRDNHAVSCQVPEFVANLL----NLTT 210
           Q L+LS+ LL D     L   L      L  ++L     +S    E +A++L    +   
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKE 174

Query: 211 LDLSQCDLH---GKFPEKVLQVP--TLETLDLSYNSLLQGSLPHF----PKNSSLRNLNL 261
           L +S  D++    +   + L+     LE L L    +   +           +SLR L L
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234

Query: 262 KNTSFSGK-----LPDSIGNLENLASVDVSSCNFT----RPIPTSMANLTQLFHLDFSSN 312
            +            P  +     L ++ +  C  T      +   +     L  L  + N
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294

Query: 313 HFSDP----IPTLRLYMSRNLNYLNLSSNDLT 340
              D     +    L     L  L + S   T
Sbjct: 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 53/276 (19%), Positives = 87/276 (31%), Gaps = 65/276 (23%)

Query: 127 QNLTELRELYLDNVDLSGRRTEW-CKAMSFLPNLQVLNLSNCLLSDPINHHLANLL---- 181
                L +L L+   LS    E     +   P+ + L +SN  +++     L   L    
Sbjct: 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSP 198

Query: 182 -SLSVIRLRDNH--AVSCQV-PEFVANLLNLTTLDLSQCDLHGKFPEKVLQV-----PTL 232
             L  ++L      + +C+     VA+  +L  L L    L      ++          L
Sbjct: 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258

Query: 233 ETLDLSYNSLLQGSLPHF----PKNSSLRNLNLKNTSFSGK--------LPDSIGNLENL 280
            TL +    +                SL+ L+L       +        L +    LE+L
Sbjct: 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318

Query: 281 ASVDVSSCNFT----RPIPTSMANLTQLFHLDFSSNHFSD------------PIPTLR-L 323
               V SC+FT        + +A    L  L  S+N   D            P   LR L
Sbjct: 319 ---WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375

Query: 324 YMSRN-------------------LNYLNLSSNDLT 340
           +++                     L  L+LS+N L 
Sbjct: 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 29/182 (15%), Positives = 56/182 (30%), Gaps = 25/182 (13%)

Query: 181 LSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQV----PTLETLD 236
           L +  + ++       +  E +  L     + L  C L     + +       P L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 237 LSYNSL-------LQGSLPHFPKNSSLRNLNLKNTSFSGK----LPDSIGNLENLASVDV 285
           L  N L       +   L     +  ++ L+L+N   +G     L  ++  L  L  + +
Sbjct: 63  LRSNELGDVGVHCVLQGLQT--PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 286 SSCNFTRPIPTSMA-----NLTQLFHLDFSSNHFSDPIPT---LRLYMSRNLNYLNLSSN 337
           S           +         +L  L       S          L    +   L +S+N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 338 DL 339
           D+
Sbjct: 181 DI 182

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 41/248 (16%), Positives = 77/248 (31%), Gaps = 37/248 (14%)

Query: 127 QNLTELRELYLDNVDLSGRRTEW-CKAMSFLPNLQVLNLSNCLLSDPINHHLANLL---- 181
            +  +L  L L++  ++       C  ++   +L+ L L +  L D     L   L    
Sbjct: 196 DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPS 255

Query: 182 -SLSVIRLRDNH--AVSCQ-VPEFVANLLNLTTLDLSQCDLHGKFPEKVLQV-----PTL 232
             L  + + +    A  C  +   +    +L  L L+  +L  +    + +        L
Sbjct: 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 315

Query: 233 ETLDLSYNSLLQGSLPHF----PKNSSLRNLNLKNTSFSGK--------LPDSIGNLENL 280
           E+L +   S       HF     +N  L  L + N              L      L  L
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375

Query: 281 ASVDVSSCNFT----RPIPTSMANLTQLFHLDFSSNHFSDP----IPTLRLYMSRNLNYL 332
               ++ C+ +      +  ++     L  LD S+N   D     +          L  L
Sbjct: 376 ---WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432

Query: 333 NLSSNDLT 340
            L     +
Sbjct: 433 VLYDIYWS 440

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 47/251 (18%), Positives = 80/251 (31%), Gaps = 48/251 (19%)

Query: 95  SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDN-----VDLSGRRTEW 149
             L  L +LD  +            I +    + LT L +L   +     +DLS      
Sbjct: 39  EQLATLTSLDCHN----------SSITDMTGIEKLTGLTKLICTSNNITTLDLSQ----- 83

Query: 150 CKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLT 209
                   NL  L   +  L++     +  L  L+ +    N          V+    LT
Sbjct: 84  ------NTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTK----LDVSQNPLLT 130

Query: 210 TLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGK 269
            L+ ++  L       V     L  LD   N  +  +       + L  L+      +  
Sbjct: 131 YLNCARNTLT---EIDVSHNTQLTELDCHLNKKI--TKLDVTPQTQLTTLDCSFNKITE- 184

Query: 270 LPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNL 329
               +   + L  ++  + N T+     +    QL  LD SSN  +     + +     L
Sbjct: 185 --LDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT----EIDVTPLTQL 235

Query: 330 NYLNLSSNDLT 340
            Y + S N LT
Sbjct: 236 TYFDCSVNPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 42/269 (15%), Positives = 76/269 (28%), Gaps = 39/269 (14%)

Query: 72  LFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTE 131
           +     L  LN          + S   +L  LD    + I+                 T+
Sbjct: 123 VSQNPLLTYLNCARNTLTEIDV-SHNTQLTELDCHLNKKIT----------KLDVTPQTQ 171

Query: 132 LRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDN 191
           L  L      ++         +S    L  LN     ++      L   + L+ +    N
Sbjct: 172 LTTLDCSFNKITE------LDVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSN 222

Query: 192 HAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFP 251
                     V  L  LT  D S   L  +     L    L TL      LL+  L H  
Sbjct: 223 KLTEID----VTPLTQLTYFDCSVNPLT-ELDVSTL--SKLTTLHCIQTDLLEIDLTHNT 275

Query: 252 KNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSS 311
           +    +    +           + +   L  +D  +   T  +  S     +L +L  ++
Sbjct: 276 QLIYFQAEGCRKIKEL-----DVTHNTQLYLLDCQAAGITE-LDLS--QNPKLVYLYLNN 327

Query: 312 NHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
              +     L +  +  L  L+  +  + 
Sbjct: 328 TELT----ELDVSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 43/215 (20%), Positives = 76/215 (35%), Gaps = 27/215 (12%)

Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSV 185
            + L  L  L   N  ++         +  L  L  L  ++  ++      L+   +L+ 
Sbjct: 38  EEQLATLTSLDCHNSSITD-----MTGIEKLTGLTKLICTSNNITTL---DLSQNTNLTY 89

Query: 186 IRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQG 245
           +    N   +      V  L  LT L+     L       V Q P L  L+ + N+L + 
Sbjct: 90  LACDSNKLTNLD----VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLTEI 142

Query: 246 SLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLF 305
            + H  + + L     K  +        +     L ++D S    T      ++    L 
Sbjct: 143 DVSHNTQLTELDCHLNKKIT-----KLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLN 194

Query: 306 HLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
            L+  +N+    I  L L  +  L +L+ SSN LT
Sbjct: 195 RLNCDTNN----ITKLDLNQNIQLTFLDCSSNKLT 225

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 40/275 (14%), Positives = 81/275 (29%), Gaps = 43/275 (15%)

Query: 72  LFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTE 131
           +     L +L+  F       + S    L  L+  +          +   + N    LT 
Sbjct: 166 VTPQTQLTTLDCSFNKITELDV-SQNKLLNRLNCDTN--------NITKLDLNQNIQLTF 216

Query: 132 L--RELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLR 189
           L      L  +D++            L  L   + S   L++     L+ L +L      
Sbjct: 217 LDCSSNKLTEIDVTP-----------LTQLTYFDCSVNPLTELDVSTLSKLTTLH---CI 262

Query: 190 DNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPH 249
               +   +     +   L       C    +    V     L  LD     +    L  
Sbjct: 263 QTDLLEIDL----THNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGI--TELD- 313

Query: 250 FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDF 309
             +N  L  L L NT  + +L   + +   L S+   + +      +S+  +  L +   
Sbjct: 314 LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFE 368

Query: 310 SSNHFSD----PIPTLRLYMSRNLNYLNLSSNDLT 340
           +           +    L ++ + + L+   N + 
Sbjct: 369 AEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 12/134 (8%)

Query: 207 NLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSF 266
           N  +   +  ++         Q+ TL +LD   +S+    +    K + L  L   + + 
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT--DMTGIEKLTGLTKLICTSNNI 76

Query: 267 SGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMS 326
           +  L   +    NL  +   S   T      +  LT+L +L+  +N  +     L +  +
Sbjct: 77  T-TLD--LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT----KLDVSQN 126

Query: 327 RNLNYLNLSSNDLT 340
             L YLN + N LT
Sbjct: 127 PLLTYLNCARNTLT 140

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.6 bits (134), Expect = 7e-09
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 8/191 (4%)

Query: 155 FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLS 214
              N   L      L        +    L  I +  N  +     +  +NL  L  + + 
Sbjct: 28  LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 215 QCDLHGKFPEKVLQ-VPTLETLDLSYNSLLQGSLPH--FPKNSSLRNLNLKNTSFSGKLP 271
           + +       +  Q +P L+ L +S   +    LP      +     L++++      + 
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGI--KHLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 272 DSI--GNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNL 329
            +   G       + ++       I  S  N TQL  L+ S N+  + +P    + +   
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204

Query: 330 NYLNLSSNDLT 340
             L++S   + 
Sbjct: 205 VILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.5 bits (126), Expect = 6e-08
 Identities = 45/247 (18%), Positives = 83/247 (33%), Gaps = 45/247 (18%)

Query: 95  SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS 154
           S    L  +++S        +  LE+   + F NL +L E+ ++          +    +
Sbjct: 51  SGFGDLEKIEISQ-------NDVLEVIEADVFSNLPKLHEIRIEK----ANNLLYINPEA 99

Query: 155 F--LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPE--FVANLLNLTT 210
           F  LPNLQ L +SN  +    + H  + L   ++ ++DN  +   +    FV        
Sbjct: 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFESVI 158

Query: 211 LDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKL 270
           L L++  +  +          L+ L+LS N+ L+                L N  F G  
Sbjct: 159 LWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE---------------ELPNDVFHG-- 200

Query: 271 PDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLN 330
                       +D+S           + NL +L      +      +  L       L 
Sbjct: 201 ------ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKL-----VALM 249

Query: 331 YLNLSSN 337
             +L+  
Sbjct: 250 EASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 20/121 (16%), Positives = 33/121 (27%), Gaps = 7/121 (5%)

Query: 230 PTLETLDLSYNSLLQGSLPH--FPKNSSLRNLNLKNTSFSGKLPDSI-GNLENLASVDVS 286
                L      L    +    F     L  + +        +   +  NL  L  + + 
Sbjct: 30  RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 287 SCNFTRPIPTSM-ANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISS 345
             N    I      NL  L +L  S+      +P +    S     L++  N     I  
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 346 N 346
           N
Sbjct: 147 N 147

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.9 bits (135), Expect = 8e-09
 Identities = 35/241 (14%), Positives = 73/241 (30%), Gaps = 28/241 (11%)

Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSV 185
           F  L +L+ L ++                 L +L +L L               L +L V
Sbjct: 50  FSRLQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107

Query: 186 IRLRDNHAVSCQVPEFV-ANLLNLTTLDLSQCDLHGKFPEKVLQ-VPTLETLDLSYNSL- 242
           + L   +     +       L +L  L L   ++    P      +     LDL++N + 
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167

Query: 243 ---------LQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRP 293
                     QG      + SS+   ++       +   +     ++ ++D+S   F   
Sbjct: 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227

Query: 294 IPTSMANLTQLFHL-------------DFSSNHFSDPIP-TLRLYMSRNLNYLNLSSNDL 339
           +     +      +              F   +F DP   T +   +  +   +LS + +
Sbjct: 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI 287

Query: 340 T 340
            
Sbjct: 288 F 288

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.5 bits (134), Expect = 9e-09
 Identities = 52/304 (17%), Positives = 94/304 (30%), Gaps = 48/304 (15%)

Query: 70  SGLF-SLQYLQSLNLGFTLFYGFPMPS----SLPRLVTLDLSSREPISGFSWRLEIPNFN 124
           +G F  L  L+ L L      G  +       L  L  L L     I       +I   +
Sbjct: 96  TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IK------KIQPAS 148

Query: 125 FFQNLTELRELYLDN-----------VDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPI 173
           FF N+     L L             ++  G+     +    L ++ + +++   L    
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR----LSSITLQDMNEYWLGWEK 204

Query: 174 NHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKV------- 226
             +     S++ + L  N      + +   + +  T +                      
Sbjct: 205 CGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263

Query: 227 --------LQVPTLETLDLSYNSLLQGSLPH--FPKNSSLRNLNLKNTSFSGKLPDSIGN 276
                   L+   ++T DLS + +   +L    F   + L  L L     +    ++   
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKI--FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321

Query: 277 LENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSS 336
           L +L  +++S             NL +L  LD S NH    +         NL  L L +
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDT 380

Query: 337 NDLT 340
           N L 
Sbjct: 381 NQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 51/276 (18%), Positives = 84/276 (30%), Gaps = 33/276 (11%)

Query: 63  IGSLENASGLFSLQYLQSLNLGF--------TLFYGFPMPSSLPRLVTLDLSSREPISGF 114
           I  ++ AS   +++    L+L F             F           L LSS       
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF----QGKHFTLLRLSSITLQDMN 196

Query: 115 SWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNC------- 167
            + L           T +  L L          +          +Q L LSN        
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256

Query: 168 ---LLSDPINHHLANLL--SLSVIRLRDNHAVSCQVPEFV-ANLLNLTTLDLSQCDLHGK 221
                 DP N     L    +    L  +   +  + + V ++  +L  L L+Q +++ K
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQNEIN-K 313

Query: 222 FPEKVL-QVPTLETLDLSYNSLLQGSLPH--FPKNSSLRNLNLKNTSFSGKLPDSIGNLE 278
             +     +  L  L+LS N L  GS+    F     L  L+L           S   L 
Sbjct: 314 IDDNAFWGLTHLLKLNLSQNFL--GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371

Query: 279 NLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHF 314
           NL  + + +             LT L  +   +N +
Sbjct: 372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 42/250 (16%), Positives = 82/250 (32%), Gaps = 28/250 (11%)

Query: 75  LQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNF-----FQNL 129
           ++YL   NL  T                   S     S     ++   F F     +   
Sbjct: 278 VEYLNIYNLTIT---------ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328

Query: 130 TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLR 189
            E+    L   D                +   LN +  + +D +    + L  L  + L+
Sbjct: 329 AEMNIKMLSISDTP---FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385

Query: 190 DNHAVSCQVPEFVANLLNLTTLDLSQCDL----HGKFPEKVLQVPTLETLDLSYNSLLQG 245
            N   +    +      N+++L+     L       +        ++  L+LS N L   
Sbjct: 386 RNGLKN--FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443

Query: 246 SLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSM-ANLTQL 304
                P    ++ L+L N      +P  + +L+ L  ++V+S N  + +P  +   LT L
Sbjct: 444 VFRCLPPK--VKVLDLHNNRIM-SIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLTSL 499

Query: 305 FHLDFSSNHF 314
            ++    N +
Sbjct: 500 QYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 30/265 (11%), Positives = 77/265 (29%), Gaps = 19/265 (7%)

Query: 91  FPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTE-------LRELYLDNVDLS 143
           F   S     V + +++   +   + +L   N                L  + L +++ +
Sbjct: 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262

Query: 144 GRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVA 203
            + +       +   ++ LN+ N  +++ I+         ++  L   H  +        
Sbjct: 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE 322

Query: 204 N----LLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNL 259
                   +    LS  D             +   L+ + N               L+ L
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL 382

Query: 260 NLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQ----LFHLDFSSNHFS 315
            L+               +N++S++    +       +          +  L+ SSN  +
Sbjct: 383 ILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

Query: 316 DPIPTLRLYMSRNLNYLNLSSNDLT 340
             +      +   +  L+L +N + 
Sbjct: 442 GSVFR---CLPPKVKVLDLHNNRIM 463

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 49/278 (17%), Positives = 101/278 (36%), Gaps = 15/278 (5%)

Query: 71  GLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISG--FSWRLEIPNFNFFQN 128
            + +L +LQ  N+         + + L  L          +     +W+  +  F FF  
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275

Query: 129 LTELRELYLDNVDLSGR--RTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVI 186
              +  L + N+ ++ R  R E+  + + L +L + ++ N +         +    +++ 
Sbjct: 276 -RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 187 RLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSL--LQ 244
            L  +      +     +  + T L+ +Q        +    +  L+TL L  N L    
Sbjct: 335 MLSISDTPFIHMVCP-PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF 393

Query: 245 GSLPHFPKNSSLRNLNLKNTSF-SGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQ 303
                    SSL  L++   S  S     +    E++  +++SS   T  +   +    +
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PK 451

Query: 304 LFHLDFSSNHFSD-PIPTLRLYMSRNLNYLNLSSNDLT 340
           +  LD  +N     P     L   + L  LN++SN L 
Sbjct: 452 VKVLDLHNNRIMSIPKDVTHL---QALQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 44/313 (14%), Positives = 91/313 (29%), Gaps = 49/313 (15%)

Query: 75  LQYLQSLNLGFTLFYGFPMP---SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTE 131
           +  L+ L+L F  F   P+     +L +L  L LS+         +    +     +L  
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA--------KFRQLDLLPVAHL-H 170

Query: 132 LRELYLDNVDLSGRRTEWCKAMSF-LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRD 190
           L  + LD V    +  E           L ++   N L S  +N  +  L  L +  ++ 
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230

Query: 191 NHAVSCQVPEFVANLL------------------------------NLTTLDLSQCDLHG 220
           N     ++  F++ L                                +  L++    +  
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290

Query: 221 K-----FPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIG 275
           +     F      + +L    +     L      +   + +    L  +           
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP 350

Query: 276 NLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSD-PIPTLRLYMSRNLNYLNL 334
           +  +   ++ +   FT  +    + L +L  L    N   +     L      +L  L++
Sbjct: 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410

Query: 335 SSNDLTGGISSNI 347
           S N L        
Sbjct: 411 SLNSLNSHAYDRT 423

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 17/233 (7%)

Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLS-NCLLSDPINHHLANLLSLS 184
              L+ELR L L +  +    +       F  +L+ L++S N L +         + SL 
Sbjct: 72  ISFLSELRVLRLSHNRIR---SLDFHVFLFNQDLEYLDVSHNRLQNISC----CPMASLR 124

Query: 185 VIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLE-TLDLSYNSLL 243
            + L  N      V +   NL  LT L LS           V  +      LDL    + 
Sbjct: 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIK 184

Query: 244 QGSLPHFP--KNSSLRNLNLKNTSFSGKLPDSIGNLENLA----SVDVSSCNFTRPIPTS 297
            G          + L  +   N+ FS ++  S+  L +L      ++  +C       + 
Sbjct: 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244

Query: 298 MANLTQLFHLDFSSNHFSDP--IPTLRLYMSRNLNYLNLSSNDLTGGISSNIL 348
           +     L ++       +    +   + +  R + YLN+ +  +T  I     
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.1 bits (132), Expect = 1e-08
 Identities = 47/319 (14%), Positives = 88/319 (27%), Gaps = 34/319 (10%)

Query: 44  DCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTL 103
           +  +    + +      + +      +    +  L  +     L   +  P    R   +
Sbjct: 240 EPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHV 299

Query: 104 DLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLN 163
            L      S      +      +      +E  L    L  R   WC+  +    L    
Sbjct: 300 WLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVL----LKDRPECWCRDSATDEQLFRCE 355

Query: 164 LS--------------NCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLT 209
           LS                L      +    L  + ++R  D         E +     L 
Sbjct: 356 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE---KETLQYFSTLK 412

Query: 210 TLD--------LSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNL 261
            +D          +     +     ++   +  L L++  L    L H  +   + +L+L
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDL 470

Query: 262 KNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTL 321
            +      LP ++  L  L  +  S       +   +ANL +L  L   +N         
Sbjct: 471 SHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQ 527

Query: 322 RLYMSRNLNYLNLSSNDLT 340
            L     L  LNL  N L 
Sbjct: 528 PLVSCPRLVLLNLQGNSLC 546

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 37/197 (18%), Positives = 69/197 (35%), Gaps = 16/197 (8%)

Query: 154 SFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFV-ANLLNLTTLD 212
           S  P+ Q L L    L    +H  +NL ++S I +  +  +  Q+      NL  +T ++
Sbjct: 28  SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIE 86

Query: 213 LSQCDLHGKFPEKVLQ-VPTLETLDLSYNSLLQGSLPHFPKNSSLRNL-------NLKNT 264
           +             L+ +P L+ L +    L     P   K  S           N   T
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGL--KMFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 265 SFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLY 324
           S        + N     ++ + +  FT  +     N T+L  +  + N +   I      
Sbjct: 145 SIPVNAFQGLCNE--TLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201

Query: 325 -MSRNLNYLNLSSNDLT 340
            +    + L++S   +T
Sbjct: 202 GVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 25/173 (14%), Positives = 60/173 (34%), Gaps = 19/173 (10%)

Query: 95  SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS 154
            +L ++  +++ +   ++       I   +  + L  L+ L + N  L  +       + 
Sbjct: 77  YNLSKVTHIEIRNTRNLT------YIDP-DALKELPLLKFLGIFNTGL--KMFPDLTKVY 127

Query: 155 FLPNLQVLNLS-NCLLSDPINHHLANLLSLSV-IRLRDNHAVSCQVPEFVANLLNLTTLD 212
                 +L ++ N  ++    +    L + ++ ++L +N   S  V  +  N   L  + 
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNGTKLDAVY 185

Query: 213 LSQCDLHGKFPEKVLQ--VPTLETLDLSYNSLLQGSLPH--FPKNSSLRNLNL 261
           L++        +            LD+S  S+   +LP         L   N 
Sbjct: 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT--ALPSKGLEHLKELIARNT 236

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 52.6 bits (125), Expect = 7e-08
 Identities = 40/258 (15%), Positives = 78/258 (30%), Gaps = 22/258 (8%)

Query: 32  SESTDCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGF 91
               +  +    +         L        +  ++       L  L+ + +G   + G 
Sbjct: 63  KGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIGXWGYEGE 122

Query: 92  PMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQ-NLTELRELYLDNVDLSGRRTEWC 150
                   +V            F   ++            +L  +      L+  + +  
Sbjct: 123 DCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT 182

Query: 151 KAMSF----LPNLQVLNLSNCLLSDPI-----NHHLANLLSLSVIRLRDNHAVSCQVPEF 201
             +S      PNL+ L + +  L D +        L NL  L +    +++     +  F
Sbjct: 183 NNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242

Query: 202 VANLL-----NLTTLDLSQCDLHGKFPEKVLQ---VPTLETLDLSYNSL----LQGSLPH 249
                     NL  L +   +      E  L+   +P LET+D+S   L     +  L H
Sbjct: 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH 302

Query: 250 FPKNSSLRNLNLKNTSFS 267
             K   L+ +N+K    S
Sbjct: 303 VDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.8 bits (115), Expect = 1e-06
 Identities = 37/263 (14%), Positives = 79/263 (30%), Gaps = 26/263 (9%)

Query: 78  LQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYL 137
            +   +         M     +       + E ++     L+       + +T     Y 
Sbjct: 61  TKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIGXWGY- 119

Query: 138 DNVDLSGRRTEWCKAMSFLPNLQVLNLSN-----CLLSDPINHHLANLLSLSVIRLRDNH 192
           +  D S       +      + + L   +       +S      L+ +L  ++  L +  
Sbjct: 120 EGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD-AMPLLNNLK 178

Query: 193 AVSCQVPEFVAN-LLNLTTLDLSQCDLHGKFPEKVL--QVPTLETLDLSYNSLLQG---- 245
                          NL +L++    L     E +L   +P LE L L       G    
Sbjct: 179 IKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD 238

Query: 246 -----SLPHFPKNSSLRNLNLKNTSFSGKLPDSIGN---LENLASVDVSSCNFT----RP 293
                 L    +  +L+ L + +      + +       L  L ++D+S+   T    R 
Sbjct: 239 MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARL 298

Query: 294 IPTSMANLTQLFHLDFSSNHFSD 316
           +   +  +  L  ++   N+ SD
Sbjct: 299 LLDHVDKIKHLKFINMKYNYLSD 321

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 51/200 (25%), Positives = 77/200 (38%), Gaps = 22/200 (11%)

Query: 95  SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS 154
            S P L  LDLS  E I        I +   +Q+L+ L  L L    +         A S
Sbjct: 49  FSFPELQVLDLSRCE-IQ------TIED-GAYQSLSHLSTLILTGNPIQSLALG---AFS 97

Query: 155 FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLS 214
            L +LQ L      L+   N  + +L +L  + +  N   S ++PE+ +NL NL  LDLS
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 215 QCDLHGKFPEKVLQV-----PTLETLDLSYNSLLQGSLPH--FPKNSSLRNLNLKNTSFS 267
              +        L+V         +LDLS N +    +    F K   L+ L L      
Sbjct: 158 SNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAF-KEIRLKELALDTNQLK 213

Query: 268 GKLPDSIGNLENLASVDVSS 287
                    L +L  + + +
Sbjct: 214 SVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 45/190 (23%), Positives = 70/190 (36%), Gaps = 32/190 (16%)

Query: 156 LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQ 215
            P LQVL+LS C +    +    +L  LS + L  N   S  +  F + L +L  L   +
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVE 109

Query: 216 CDLHGKFPEKVLQVPT-LETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSI 274
            +L        +     L+ L++++N +   S                       LP+  
Sbjct: 110 TNLA-SLENFPIGHLKTLKELNVAHNLIQ--SFK---------------------LPEYF 145

Query: 275 GNLENLASVDVSSCNFTRPIPTSMANLTQL----FHLDFSSNHFSDPIPTLRLYMSRNLN 330
            NL NL  +D+SS        T +  L Q+      LD S N  +  I     +    L 
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQP-GAFKEIRLK 203

Query: 331 YLNLSSNDLT 340
            L L +N L 
Sbjct: 204 ELALDTNQLK 213

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 42/237 (17%), Positives = 77/237 (32%), Gaps = 22/237 (9%)

Query: 126 FQNLTELR--------ELYLDNVDLSGRRTEWCKAMS-FLPNLQVLNLSNCLLSDPINHH 176
           F NL  L+           L   +  G  T W   +S  L  L+ ++    ++SD     
Sbjct: 72  FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDR 131

Query: 177 LANLL--SLSVIRLRDNHAVSCQ-VPEFVANLLNLTTLDLSQCDLHGKFPEKVLQV---- 229
           LA      L  ++L      +   +   V +   + TL + +     K  + + ++    
Sbjct: 132 LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191

Query: 230 PTLETLDLSYNSLLQ---GSLPHFPKNS-SLRNLNLKNTSFSGKLPDSIGNLENLASVDV 285
            +LE L+       +     L    +N  SL ++ + +     +L        NL     
Sbjct: 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCG 250

Query: 286 SSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLY-MSRNLNYLNLSSNDLTG 341
            S N    +P    NL     L      +  P     L+  +  +  L+L    L  
Sbjct: 251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 35/257 (13%), Positives = 76/257 (29%), Gaps = 38/257 (14%)

Query: 63  IGSLENASGLFSLQYLQSLNLGFTLFY---GFPMPSSLPRLVTLDLSSREPISGFSWRLE 119
           +G  E          ++ L+L + L        +    P L  L+  +     G      
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLE---- 335

Query: 120 IPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS---------FLPNLQVLNLSNCLLS 170
                  Q   +L+ L ++         +    +S             L+ + +    ++
Sbjct: 336 ----VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT 391

Query: 171 DP----INHHLANLLSLSVIRLRDNHAVSCQ-----VPEFVANLLNLTTLDLSQCDLHGK 221
           +     I  +L NL    ++ L     ++       V   +     L           G 
Sbjct: 392 NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR--QGG 449

Query: 222 FPEKVLQV-----PTLETLDLSYNSLLQGSLPHFPKN-SSLRNLNLKNTSFSGK-LPDSI 274
             +  L       P +  + L Y       L  F +   +L+ L ++   FS + +  ++
Sbjct: 450 LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509

Query: 275 GNLENLASVDVSSCNFT 291
             L +L  + V     +
Sbjct: 510 TKLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 32/286 (11%), Positives = 70/286 (24%), Gaps = 41/286 (14%)

Query: 95  SSLPRLVTLDLSSREPISGFSWRLEIPN-----FNFFQNLTELRELYLDNVDLSGRRTEW 149
            +   LV++ +   E +    +     N              + E Y++ V         
Sbjct: 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG 276

Query: 150 CKAM---------SFLPNLQVLNLSNC-LLSDPINHHLANLLSLSVIRLRDNHAVSCQVP 199
              M          F   ++ L+L    L ++     +    +L V+  R+       + 
Sbjct: 277 LSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRG-LE 335

Query: 200 EFVANLLNLTTLDLSQCDLHGKFPEKVLQV------------PTLETLDLSYNSLLQGSL 247
                   L  L + +        ++   V              LE + +  + +   SL
Sbjct: 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL 395

Query: 248 PHFPKN-SSLRNLNLKNTSFSGKLPDSIG---------NLENLASVDVSSC--NFTRPIP 295
                   +L +  L       ++ D              + L            T    
Sbjct: 396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455

Query: 296 TSMA-NLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
           + +      +  +       SD           NL  L +     +
Sbjct: 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 49/247 (19%), Positives = 84/247 (34%), Gaps = 21/247 (8%)

Query: 65  SLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFN 124
            L      F +Q++   N    +     + S   +L  L L           RL  P  N
Sbjct: 85  PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE--------GLRLSDPIVN 136

Query: 125 FFQNLTELRELYLDNVDLSGRRTEWCKAM-SFLPNLQVLNLSNC--LLSDPINHHLANLL 181
                + L  L L     SG      + + S    L  LNLS C       +   +A++ 
Sbjct: 137 TLAKNSNLVRLNLSGC--SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194

Query: 182 -SLSVIRLRD-NHAVSCQ-VPEFVANLLNLTTLDLSQCD-LHGKFPEKVLQVPTLETLDL 237
            +++ + L      +    +   V    NL  LDLS    L     ++  Q+  L+ L L
Sbjct: 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254

Query: 238 SYNSLL-QGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPT 296
           S    +   +L    +  +L+ L +      G L      L +L    ++  +FT     
Sbjct: 255 SRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL---QINCSHFTTIARP 311

Query: 297 SMANLTQ 303
           ++ N   
Sbjct: 312 TIGNKKN 318

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 42/224 (18%), Positives = 77/224 (34%), Gaps = 15/224 (6%)

Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSV 185
             +   ++ + L N  +          +S    LQ L+L    LSDPI + LA   +L  
Sbjct: 89  HFSPFRVQHMDLSNSVIEVSTLHGI--LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146

Query: 186 IRLRDNHAVSCQVPEFVA-NLLNLTTLDLSQCDLHGKFPEKVL---QVPTLETLDLS--Y 239
           + L      S    + +  +   L  L+LS C    +   +V       T+  L+LS   
Sbjct: 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206

Query: 240 NSLLQGSLPHFPKN-SSLRNLNLKN-TSFSGKLPDSIGNLENLASVDVSSC-NFTRPIPT 296
            +L +  L    +   +L +L+L +              L  L  + +S C +       
Sbjct: 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 266

Query: 297 SMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
            +  +  L  L          +  L       L +L ++ +  T
Sbjct: 267 ELGEIPTLKTLQVFGIVPDGTLQLL----KEALPHLQINCSHFT 306

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 50.3 bits (120), Expect = 5e-07
 Identities = 45/291 (15%), Positives = 90/291 (30%), Gaps = 30/291 (10%)

Query: 65  SLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPN-- 122
            L+          +     G+   +   M SS   L  + L           R+ + +  
Sbjct: 72  ELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLK----------RMVVTDDC 121

Query: 123 -FNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLA--- 178
                ++    + L L + +            +   NL+ L+L    + D   H L+   
Sbjct: 122 LELIAKSFKNFKVLVLSSCEGFSTDG-LAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180

Query: 179 ----NLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLET 234
               +L+SL++  L    + S  +   V    NL +L L++     K    + + P LE 
Sbjct: 181 DTYTSLVSLNISCLASEVSFSA-LERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEE 239

Query: 235 LDLSY------NSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSC 288
           L            +  G          LR L+    +    LP        L ++++S  
Sbjct: 240 LGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA 299

Query: 289 NFTRP-IPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSND 338
                 +   +    +L  L          +  L     ++L  L +  ++
Sbjct: 300 TVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTC-KDLRELRVFPSE 349

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 40/238 (16%), Positives = 75/238 (31%), Gaps = 31/238 (13%)

Query: 78  LQSLNLGFTLFY---GFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRE 134
           L +LNL +          +    P+L  L +      +G                 +LRE
Sbjct: 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLE--------VLASTCKDLRE 342

Query: 135 LYLDNVDLSGRRTEW-------CKAMSFLPNLQVLNLSNCLLSDPINHHLA-NLLSLSVI 186
           L +   +                      P L+ +      +++     +A N  +++  
Sbjct: 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF 402

Query: 187 RLRDNHAVSCQ----------VPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLD 236
           RL      +                V +  +L  L LS       F         +E L 
Sbjct: 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLS 462

Query: 237 LSYNSLLQGSLPHFPKN-SSLRNLNLKNTSFSGK-LPDSIGNLENLASVDVSSCNFTR 292
           +++       + H      SLR L +++  F  K L  +   LE + S+ +SSC+ + 
Sbjct: 463 VAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 35/219 (15%), Positives = 61/219 (27%), Gaps = 28/219 (12%)

Query: 137 LDNVDLSGRRTEWCKAM-SFLPNLQVLNLSNCLLSDPINHHLA-NLLSLSVIRLRDNHAV 194
           L      G    W +AM S    L+ + L   +++D     +A +  +  V+ L      
Sbjct: 84  LVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143

Query: 195 SCQ-VPEFVANLLNLTTLDLSQCDLHGKFPEKVLQV----PTLETLDLSYNSLLQGSLPH 249
           S   +    A   NL  LDL + D+       +        +L +L++S  +        
Sbjct: 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS---- 199

Query: 250 FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDF 309
               S+L  L              +    NL S+ ++       + T +    QL  L  
Sbjct: 200 ---FSALERL--------------VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242

Query: 310 SSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNIL 348
                                   L             L
Sbjct: 243 GGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYL 281

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 7e-07
 Identities = 25/111 (22%), Positives = 37/111 (33%), Gaps = 12/111 (10%)

Query: 96  SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSF 155
               L  L + +++ +     R         + L ELR L +    L     +   A  F
Sbjct: 29  GAENLTELYIENQQHLQHLELRD-------LRGLGELRNLTIVKSGLRFVAPD---AFHF 78

Query: 156 LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAV-SCQVPEFVANL 205
            P L  LNLS   L   ++      LSL  + L  N    SC +       
Sbjct: 79  TPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWE 128

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 4e-05
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 3/107 (2%)

Query: 160 QVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLH 219
            +    +  L     HHL    +L+ + + +   +       +  L  L  L + +  L 
Sbjct: 12  GLRCTRDGALDSL--HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 220 GKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSF 266
              P+     P L  L+LS+N+L   S     +  SL+ L L     
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTV-QGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 8/96 (8%)

Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSV 185
                 L ELY++N     +  E  + +  L  L+ L +    L             LS 
Sbjct: 27  LPGAENLTELYIENQQHL-QHLEL-RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 186 IRLRDNHAVSCQVPEFVANLLNLTTLDLS----QCD 217
           + L  N   S  +       L+L  L LS     C 
Sbjct: 85  LNLSFNALES--LSWKTVQGLSLQELVLSGNPLHCS 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 3/102 (2%)

Query: 240 NSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPD-SIGNLENLASVDVSSCNFTRPIPTSM 298
                 SL H P   +L  L ++N      L    +  L  L ++ +         P + 
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 299 ANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
               +L  L+ S N         +     +L  L LS N L 
Sbjct: 77  HFTPRLSRLNLSFNALESLSW--KTVQGLSLQELVLSGNPLH 116

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 5/98 (5%)

Query: 119 EIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLA 178
           E           EL  L   NV L+         +  L  L+ L LS+  +S  +     
Sbjct: 31  EGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKLELSDNRVSGGLEVLAE 85

Query: 179 NLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQC 216
              +L+ + L  N        E +  L NL +LDL  C
Sbjct: 86  KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 30/138 (21%)

Query: 127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVI 186
           +  ++++EL LDN   +  + E          L+ L+  N  L+      +ANL      
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLE--GLTDEFEELEFLSTINVGLTS-----IANL------ 60

Query: 187 RLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSL-LQG 245
                             L  L  L+LS   + G       + P L  L+LS N +    
Sbjct: 61  ----------------PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS 104

Query: 246 SLPHFPKNSSLRNLNLKN 263
           ++    K  +L++L+L N
Sbjct: 105 TIEPLKKLENLKSLDLFN 122

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 38/223 (17%), Positives = 75/223 (33%), Gaps = 36/223 (16%)

Query: 128 NLTELRELYLDNVDLSGRRTEW-CKAMSFLP-NLQVLNLSNCLLSDPINHHLANLL---- 181
               +  L L    LS + ++   K ++ +P  + VL+L     S   +           
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 182 -SLSVIRLRDNH----AVSCQVPEFVANLLNLTTLDLSQCDLH---GKFPEKVLQVP--T 231
            S++ + LR N     +    +    A   N+ +L+L   +L         K L     +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 232 LETLDLSYNSL-------LQGSLPHFPKNSSLRNLNLKNTSFSGK----LPDSIGNLENL 280
           + +LDLS N L       L          + + +LNL      G     L     +L++L
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSS--IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 281 ASVDVSSCNFTRP-------IPTSMANLTQLFHLDFSSNHFSD 316
            +V +               +  +  N+ ++  +D +      
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 45/227 (19%), Positives = 74/227 (32%), Gaps = 39/227 (17%)

Query: 150 CKAMSFLPNLQVLNLSNCLLSDPINHHLANLL-----SLSVIRLRDNH--AVSCQV--PE 200
            +  S    +  L+LS   L       L         S++ + L  N     +       
Sbjct: 15  EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI 74

Query: 201 FVANLLNLTTLDLSQCDLHGKFPE---KVLQVP--TLETLDLSYNSLLQGSLPHF----- 250
             A   N+T+L+LS   L  K  +   K L     T+  LDL +N     S   F     
Sbjct: 75  LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134

Query: 251 PKNSSLRNLNLKNTSFSGK--------LPDSIGNLENLASVDVSSCNFTRPIPTSMANL- 301
              +S+ +LNL+      K        L     N+ +L   ++   N        +A   
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL---NLRGNNLASKNCAELAKFL 191

Query: 302 ----TQLFHLDFSSNHFSD----PIPTLRLYMSRNLNYLNLSSNDLT 340
                 +  LD S+N         +  +   +  ++  LNL  N L 
Sbjct: 192 ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 30/153 (19%)

Query: 112 SGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSD 171
           SG   +  I      +    +REL LDN   +  + E     +   NL+ L+L N  L  
Sbjct: 6   SGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIE--GLTAEFVNLEFLSLINVGLIS 63

Query: 172 PINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPT 231
                ++NL                        L  L  L+LS+  + G       ++P 
Sbjct: 64  -----VSNL----------------------PKLPKLKKLELSENRIFGGLDMLAEKLPN 96

Query: 232 LETLDLSYNSL-LQGSLPHFPKNSSLRNLNLKN 263
           L  L+LS N L    +L    K   L++L+L N
Sbjct: 97  LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 124 NFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSL 183
                   L  L L NV L          +  LP L+ L LS   +   ++     L +L
Sbjct: 43  GLTAEFVNLEFLSLINVGLIS-----VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 184 SVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGK--FPEKVLQ-VPTLETLD 236
           + + L  N        E +  L  L +LDL  C++     + E V + +P L  LD
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 4/134 (2%)

Query: 207 NLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSF 266
           + T L LS+  L+      ++    L  L+L    L    L        L  L+L +   
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQL 89

Query: 267 SGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMS 326
              LP     L  L  +DVS    T     ++  L +L  L    N     +P   L  +
Sbjct: 90  Q-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPT 147

Query: 327 RNLNYLNLSSNDLT 340
             L  L+L++N+LT
Sbjct: 148 PKLEKLSLANNNLT 161

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 42/190 (22%), Positives = 58/190 (30%), Gaps = 38/190 (20%)

Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSV 185
               T L +L LD                             L    ++  L  L +L  
Sbjct: 51  LMPYTRLTQLNLDR--------------------------AELTKLQVDGTLPVLGTL-- 82

Query: 186 IRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVL-QVPTLETLDLSYNSLLQ 244
             L  N   S  +P     L  LT LD+S   L    P   L  +  L+ L L  N L  
Sbjct: 83  -DLSHNQLQS--LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK- 137

Query: 245 GSLPH--FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLT 302
            +LP         L  L+L N + +      +  LENL ++ +   N    IP       
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSH 195

Query: 303 QLFHLDFSSN 312
            L       N
Sbjct: 196 LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 32/111 (28%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 230 PTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCN 289
                L LS N L   SL      + L  LNL     + KL    G L  L ++D+S   
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQ 88

Query: 290 FTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340
               +P     L  L  LD S N  +  +P   L     L  L L  N+L 
Sbjct: 89  LQS-LPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK 137

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 27/137 (19%)

Query: 204 NLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKN 263
           N +    LDL    +          +   + +D S N +    L  FP    L+ L + N
Sbjct: 17  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNN 73

Query: 264 TSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRL 323
                        L +L                          L  ++N   +      L
Sbjct: 74  NRICRIGEGLDQALPDLT------------------------ELILTNNSLVELGDLDPL 109

Query: 324 YMSRNLNYLNLSSNDLT 340
              ++L YL +  N +T
Sbjct: 110 ASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 124 NFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSL 183
           N    L +   +   + ++             L  L+ L ++N  +          L  L
Sbjct: 36  NLGATLDQFDAIDFSDNEIRKLDG-----FPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 184 SVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGK--FPEKVLQ-VPTLETLD 236
           + + L +N  V     + +A+L +LT L + +  +  K  +   V+  VP +  LD
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 8/116 (6%)

Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSV 185
           + N    REL L    +     E   A   L     ++ S+  +          L  L  
Sbjct: 15  YTNAVRDRELDLRGYKIP--VIENLGAT--LDQFDAIDFSDNEIRKLDG--FPLLRRLKT 68

Query: 186 IRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHG-KFPEKVLQVPTLETLDLSYN 240
           + + +N  +          L +LT L L+   L      + +  + +L  L +  N
Sbjct: 69  LLVNNNR-ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 35/238 (14%), Positives = 66/238 (27%), Gaps = 38/238 (15%)

Query: 129 LTELRELYLDNVDLSGRRTEW-CKAMSF-LPNLQVLNLSNCLLSDPINHHLANLL----S 182
               R+L L    L     +     +      +  L LSN  L+      L   L    S
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184

Query: 183 LSVIRLRDNH--AVSCQVPEFVANLL----NLTTLDLSQCDLH---GKFPEKVLQV-PTL 232
           ++ + L          +    +A  L     L  L+++             +  +  P+L
Sbjct: 185 VTHLSLLHTGLGDEGLE---LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSL 241

Query: 233 ETLDLSYNSL-------LQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDV 285
           E L L +N L       L+         + +     + T+       S      L+ V  
Sbjct: 242 ELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV------SEYWSVILSEVQR 295

Query: 286 SSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLR---LYMSRNLNYLNLSSNDLT 340
           +  ++ R        L      D   +  +   P  +   L +   +  L        
Sbjct: 296 NLNSWDRARVQRHLELLL---RDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 35/163 (21%), Positives = 58/163 (35%), Gaps = 33/163 (20%)

Query: 129 LTELRELYLDNVDLSGRRTEWCKAMSFL-----PNLQVLNLSNCLLSDPINHHLAN-LLS 182
           L+ LR+L L  V ++      C  ++ +       L  +NL++C L       L    L 
Sbjct: 71  LSSLRQLNLAGVRMTP---VKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLR 127

Query: 183 LSVIRLRDNH--AVSCQVPEFVANLL-----NLTTLDLSQCDLH---GKFPEKVLQV-PT 231
              + L+ N     +C+    + +LL      +TTL LS   L         + L    +
Sbjct: 128 ARKLGLQLNSLGPEACKD---LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184

Query: 232 LETLDLSYNSL-------LQGSLPHFPKNSSLRNLNLKNTSFS 267
           +  L L +  L       L   L     N  L+ LN+      
Sbjct: 185 VTHLSLLHTGLGDEGLELLAAQLDR---NRQLQELNVAYNGAG 224

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 21/165 (12%)

Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLS---DPINHHLANLLS 182
           F  LT+LR LYL++  L             L NL+ L +++  L      +   L NL  
Sbjct: 57  FHRLTKLRLLYLNDNKLQTLPA---GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113

Query: 183 LSVIRLRDNHAVSCQVPEFV-ANLLNLTTLDLSQCDLHGKFPEKVL-QVPTLETLDLSYN 240
           L   RL  N   S  +P  V  +L  LT L L   +L    P+ V  ++ +L+ L L  N
Sbjct: 114 L---RLDRNQLKS--LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNN 167

Query: 241 SLLQGSLPH--FPKNSSLRNLNLKN---TSFSGKLPDSIGNLENL 280
            L    +P   F K + L+ L L N           DS+  L+ L
Sbjct: 168 QL--KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 13/130 (10%)

Query: 146 RTEWCKAMSFLPN-------LQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVS--- 195
           +  W K  + LP        +Q ++ ++  +      H+  L  +  IRL   H +    
Sbjct: 43  QQRWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC 102

Query: 196 -CQVPEFVANLLNLTTLDLSQC-DLHGKFPEKVLQVPTLETLDLSYNSLLQ-GSLPHFPK 252
             ++ +      ++  +++  C ++  K    +     L+ L LS    ++         
Sbjct: 103 LERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAF 162

Query: 253 NSSLRNLNLK 262
            +SL +L LK
Sbjct: 163 KTSLPSLELK 172

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 8e-04
 Identities = 67/412 (16%), Positives = 121/412 (29%), Gaps = 111/412 (26%)

Query: 36  DCCDWNGVDCDEAGHV----IGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFT----- 86
           D C    V C     +    +    S E +L   L+         +    +         
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 87  ---------LFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEI----PNFNFFQNLTELR 133
                    L    P  + L  LV L++ + +  + F+   +I            L+   
Sbjct: 228 HSIQAELRRLLKSKPYENCL--LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 134 ELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVI--RLRDN 191
             ++     S   T   +  S L  L+ L+     L  P      N   LS+I   +RD 
Sbjct: 286 TTHISLDHHSMTLTP-DEVKSLL--LKYLDCRPQDL--PREVLTTNPRRLSIIAESIRDG 340

Query: 192 HA-------VSC-QVPEFVANLLN-LTTLDLSQC--DLHGKFPEKVLQVP--TLETL--D 236
            A       V+C ++   + + LN L   +  +    L   FP     +P   L  +  D
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSA-HIPTILLSLIWFD 398

Query: 237 LSYN------------SLLQG-------SLPHF-----PKNSSLRNLN---------LKN 263
           +  +            SL++        S+P        K  +   L+          K 
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 264 TSFSGKLPDS--------IG----NLENLASVDVSS---CNF------------TRPIPT 296
                 +P          IG    N+E+   + +      +F                  
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518

Query: 297 SMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNIL 348
           S+ N   L  L F   +  D  P     ++  L++L     +L     +++L
Sbjct: 519 SILNT--LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.92
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.91
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.81
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.7
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.51
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.5
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.49
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.47
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.4
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.35
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.33
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.3
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.28
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.28
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.02
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.0
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.89
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.88
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.76
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.66
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.57
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.53
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.48
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.36
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.27
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.2
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.19
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.8
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.65
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.48
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.4

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.1e-39  Score=285.58  Aligned_cols=295  Identities=27%  Similarity=0.427  Sum_probs=217.0

Q ss_pred             CchHHHHHHHHHhhhCccCCCCCCcccCCCCCCCCCCcc--ccceEeCCC---CCEEEEeCCCCccccc--cccCCcccc
Q 035693            1 CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCD--WNGVDCDEA---GHVIGLDLSAEPILIG--SLENASGLF   73 (348)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~--~~~~~c~~~---~~l~~L~ls~~~~~~~--~~~~~~~l~   73 (348)
                      |.+.|+.||.+||+++. +|    . .+.+|..+.|+|.  |.||.|...   .+|++|+++++ .+.+  .+|.  .+.
T Consensus         3 c~~~~~~aL~~~k~~~~-~~----~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~-~l~~~~~~~~--~l~   73 (313)
T 1ogq_A            3 CNPQDKQALLQIKKDLG-NP----T-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-NLPKPYPIPS--SLA   73 (313)
T ss_dssp             SCHHHHHHHHHHHHHTT-CC----G-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC-CCSSCEECCG--GGG
T ss_pred             CCHHHHHHHHHHHHhcC-Cc----c-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCC-CccCCcccCh--hHh
Confidence            89999999999999984 32    2 6899999999998  999999864   68999999999 8887  7776  888


Q ss_pred             cccccCEEeCCC-CCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhh
Q 035693           74 SLQYLQSLNLGF-TLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA  152 (348)
Q Consensus        74 ~~~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  152 (348)
                      ++++|++|++++ |.+.+. +|                           ..  +.++++|++|++++|.+....+   ..
T Consensus        74 ~l~~L~~L~L~~~n~l~~~-~p---------------------------~~--l~~l~~L~~L~Ls~n~l~~~~p---~~  120 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGP-IP---------------------------PA--IAKLTQLHYLYITHTNVSGAIP---DF  120 (313)
T ss_dssp             GCTTCSEEEEEEETTEESC-CC---------------------------GG--GGGCTTCSEEEEEEECCEEECC---GG
T ss_pred             CCCCCCeeeCCCCCccccc-CC---------------------------hh--HhcCCCCCEEECcCCeeCCcCC---HH
Confidence            999999999984 766654 22                           22  5556666666666666553333   34


Q ss_pred             hCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCC-CCCEEEccCCcCCCcccccccCCCC
Q 035693          153 MSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLL-NLTTLDLSQCDLHGKFPEKVLQVPT  231 (348)
Q Consensus       153 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~~~~  231 (348)
                      +..+++|++|++++|.+.+.+|..+..+++|++|++++| .+.+.++..+..++ .|++|++++|.+.+..|..+..++ 
T Consensus       121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-  198 (313)
T 1ogq_A          121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-  198 (313)
T ss_dssp             GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-
T ss_pred             HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-
Confidence            556666666666666666556666666677777777766 33334555666666 677777777777666666666665 


Q ss_pred             ccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCC
Q 035693          232 LETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSS  311 (348)
Q Consensus       232 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~  311 (348)
                      |+.|++++|.+.......+..+++|++|++++|.+++..+. +..+++|++|++++|.+.+.+|..+..+++|+.|++++
T Consensus       199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  277 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence            77777777776555555666677788888888877754443 66678888888888888877888888888888888888


Q ss_pred             CccCCccCchhhhhhcCCCeeecccCc-cccc
Q 035693          312 NHFSDPIPTLRLYMSRNLNYLNLSSND-LTGG  342 (348)
Q Consensus       312 n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~g~  342 (348)
                      |++.+.+|..  ...++|+.+++++|+ +.|.
T Consensus       278 N~l~~~ip~~--~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          278 NNLCGEIPQG--GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             SEEEEECCCS--TTGGGSCGGGTCSSSEEEST
T ss_pred             CcccccCCCC--ccccccChHHhcCCCCccCC
Confidence            8888777775  344788888888886 6663

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.8e-38  Score=312.91  Aligned_cols=325  Identities=26%  Similarity=0.332  Sum_probs=185.2

Q ss_pred             chHHHHHHHHHhhhCccCCCCCCcccCCCCCCCCCCccccceEeCCCCCEEEEeCCCCcccccc---ccC----------
Q 035693            2 QSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCDWNGVDCDEAGHVIGLDLSAEPILIGS---LEN----------   68 (348)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~~~~~l~~L~ls~~~~~~~~---~~~----------   68 (348)
                      .+.|+.||.+||+++. ||    . .+++|..++|||.|.||+|+ .++|+.|+|+++ .+.+.   +|.          
T Consensus        10 ~~~~~~all~~k~~~~-~~----~-~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~-~l~g~~~~l~~~l~~L~~L~~   81 (768)
T 3rgz_A           10 LYREIHQLISFKDVLP-DK----N-LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSK-PLNVGFSAVSSSLLSLTGLES   81 (768)
T ss_dssp             HHHHHHHHHHHHTTCS-CT----T-SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTS-CCCEEHHHHHHHTTTCTTCCE
T ss_pred             CHHHHHHHHHHHhhCC-Cc----c-cccCCCCCCCCcCCcceEEC-CCcEEEEECCCC-CcCCccCccChhHhccCcccc
Confidence            3578999999999984 43    3 78999999999999999998 589999999998 66655   332          


Q ss_pred             -----------CcccccccccCEEeCCCCCCCCCCCCC-----CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCC
Q 035693           69 -----------ASGLFSLQYLQSLNLGFTLFYGFPMPS-----SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTEL  132 (348)
Q Consensus        69 -----------~~~l~~~~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L  132 (348)
                                 ...+.++++|++|++++|.+++. +|.     .+++|++|++++|.+.      ...+.. .+.++++|
T Consensus        82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~------~~~~~~-~~~~l~~L  153 (768)
T 3rgz_A           82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLD------FPGKVS-GGLKLNSL  153 (768)
T ss_dssp             EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEE------CCSSCC-SCCCCTTC
T ss_pred             cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccC------CcCCHH-HhccCCCC
Confidence                       12556667777777777766653 222     5667777777776542      122211 12456666


Q ss_pred             cEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEE
Q 035693          133 RELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLD  212 (348)
Q Consensus       133 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  212 (348)
                      ++|++++|.+++..+.....+.++++|++|++++|.+.+..+.  ..+++|++|++++|. .....+. +..+++|++|+
T Consensus       154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~-l~~~~~~-l~~l~~L~~L~  229 (768)
T 3rgz_A          154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNN-FSTGIPF-LGDCSALQHLD  229 (768)
T ss_dssp             SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSC-CCSCCCB-CTTCCSCCEEE
T ss_pred             CEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCc-CCCCCcc-cccCCCCCEEE
Confidence            6666666666554432212244455555555555544432221  344555555555552 2222222 45555555555


Q ss_pred             ccCCcCCCcccccccCCCCccEEEccCCCC----------------------CCCCCCCCCC-CCCCcEEEcccCCCCCC
Q 035693          213 LSQCDLHGKFPEKVLQVPTLETLDLSYNSL----------------------LQGSLPHFPK-NSSLRNLNLKNTSFSGK  269 (348)
Q Consensus       213 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l----------------------~~~~~~~~~~-~~~L~~L~ls~n~~~~~  269 (348)
                      +++|.+.+..|..+..+++|++|++++|.+                      ....+..+.. +++|++|++++|.+.+.
T Consensus       230 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~  309 (768)
T 3rgz_A          230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA  309 (768)
T ss_dssp             CCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred             CcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc
Confidence            555555545555555555555555555543                      2222222322 25555555555555555


Q ss_pred             CCccccCCCCCCEEeecCCccCCCCccc-ccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCC
Q 035693          270 LPDSIGNLENLASVDVSSCNFTRPIPTS-MANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSN  346 (348)
Q Consensus       270 ~~~~l~~~~~L~~L~L~~n~l~~~~~~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~  346 (348)
                      +|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++|++.+.+|..+....++|++|++++|.++|.+|..
T Consensus       310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~  387 (768)
T 3rgz_A          310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN  387 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT
T ss_pred             cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh
Confidence            5555555555555555555555434433 5555556666666665555555544443235666666666666555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7.6e-38  Score=301.99  Aligned_cols=329  Identities=19%  Similarity=0.254  Sum_probs=243.4

Q ss_pred             hHHHHHHHHHhhhCccC---CCCCCcccCCCCCCCCCCccc---cceEeCCCCCEEEEeCCCCccccccccCCccccccc
Q 035693            3 SDQKLLLIQMKNSFIFD---VDSTPPAKMSQWSESTDCCDW---NGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQ   76 (348)
Q Consensus         3 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~w~~~~~~~~~---~~~~c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~   76 (348)
                      -+|+.||+++++++..+   -.+.+++..++|..+.++|.|   .||+|+..++|+.|+|+++ .+.|.+|.  .+++++
T Consensus        29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~-~l~g~lp~--~l~~L~  105 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGF-GASGRVPD--AIGQLT  105 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTS-CCEEEECG--GGGGCT
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCc-ccCCcCCh--HHhcCc
Confidence            36899999999997422   122334456699999999999   9999987789999999999 99999997  999999


Q ss_pred             ccCEEeCCCCCC------CC------------------------------------------------------------
Q 035693           77 YLQSLNLGFTLF------YG------------------------------------------------------------   90 (348)
Q Consensus        77 ~L~~L~l~~~~~------~~------------------------------------------------------------   90 (348)
                      +|+.|++++|.+      .+                                                            
T Consensus       106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~  185 (636)
T 4eco_A          106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD  185 (636)
T ss_dssp             TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred             cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence            999999999854      11                                                            


Q ss_pred             ----------CCCCC---CCCCCcEEecCCCCCCCC-cc----------eeecCCChhhhc--CCCCCcEEEccCcCCCC
Q 035693           91 ----------FPMPS---SLPRLVTLDLSSREPISG-FS----------WRLEIPNFNFFQ--NLTELRELYLDNVDLSG  144 (348)
Q Consensus        91 ----------~~~~~---~~~~L~~L~l~~~~~~~~-~~----------~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~  144 (348)
                                .++|.   .+++|++|++++|.++.. ..          ....+|..  +.  ++++|++|++++|.+.+
T Consensus       186 l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~--l~~~~l~~L~~L~L~~n~l~~  263 (636)
T 4eco_A          186 TQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED--LKWDNLKDLTDVEVYNCPNLT  263 (636)
T ss_dssp             TTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC--CCGGGCTTCCEEEEECCTTCS
T ss_pred             hhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh--hhhcccCCCCEEEecCCcCCc
Confidence                      01333   789999999999997531 00          00016766  67  99999999999999887


Q ss_pred             cchhhhhhhCCCCCCcEEEccCcc-CCC-cchHHhhhc------cCCCEEEcccCCCCCCChhh--hhhcCCCCCEEEcc
Q 035693          145 RRTEWCKAMSFLPNLQVLNLSNCL-LSD-PINHHLANL------LSLSVIRLRDNHAVSCQVPE--FVANLLNLTTLDLS  214 (348)
Q Consensus       145 ~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~------~~L~~L~l~~~~~~~~~~~~--~l~~l~~L~~L~l~  214 (348)
                      ..+   ..+.++++|++|++++|. +++ .+|..+..+      ++|++|++++|.. + .++.  .+..+++|++|+++
T Consensus       264 ~~p---~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l-~-~ip~~~~l~~l~~L~~L~L~  338 (636)
T 4eco_A          264 KLP---TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL-K-TFPVETSLQKMKKLGMLECL  338 (636)
T ss_dssp             SCC---TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC-S-SCCCHHHHTTCTTCCEEECC
T ss_pred             cCh---HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC-C-ccCchhhhccCCCCCEEeCc
Confidence            666   678899999999999998 887 788888876      9999999999954 4 5676  88999999999999


Q ss_pred             CCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCC-CcEEEcccCCCCCCCCccccCCC--CCCEEeecCCccC
Q 035693          215 QCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSS-LRNLNLKNTSFSGKLPDSIGNLE--NLASVDVSSCNFT  291 (348)
Q Consensus       215 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-L~~L~ls~n~~~~~~~~~l~~~~--~L~~L~L~~n~l~  291 (348)
                      +|.+.+.+| .+..+++|+.|++++|.+. ..+..+..+++ |++|++++|.++ .+|..+....  +|+.|++++|.+.
T Consensus       339 ~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~  415 (636)
T 4eco_A          339 YNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIG  415 (636)
T ss_dssp             SCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred             CCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCC
Confidence            999887777 6777777888888777765 33334555666 777777777776 5666555433  6777777777776


Q ss_pred             CCCccccc-------CCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCC
Q 035693          292 RPIPTSMA-------NLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSN  346 (348)
Q Consensus       292 ~~~~~~l~-------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~  346 (348)
                      +..|..+.       .+++|+.|++++|++.. +|...+..+++|++|++++|.++ .+|..
T Consensus       416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~  475 (636)
T 4eco_A          416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EIPKN  475 (636)
T ss_dssp             TTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BCCSS
T ss_pred             CcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-CcCHH
Confidence            66665555       55566677777766663 55555554466666666666666 56554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.5e-34  Score=284.55  Aligned_cols=319  Identities=18%  Similarity=0.213  Sum_probs=235.8

Q ss_pred             chHHHHHHHHHhhhCccCCCCCCcccCCCCCCCC-----CC--ccc------------cceEeCCCCCEEEEeCCCCccc
Q 035693            2 QSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSEST-----DC--CDW------------NGVDCDEAGHVIGLDLSAEPIL   62 (348)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-----~~--~~~------------~~~~c~~~~~l~~L~ls~~~~~   62 (348)
                      ..+|+.||.+||+++. +|         +|..+.     ++  |.|            .||.|+...+|+.|+|+++ .+
T Consensus       267 ~~~d~~ALl~~k~~l~-~~---------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~-~L  335 (876)
T 4ecn_A          267 YIKDYKALKAIWEALD-GK---------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGF-GA  335 (876)
T ss_dssp             HHHHHHHHHHHHHHTT-GG---------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTT-CC
T ss_pred             chHHHHHHHHHHHHcC-CC---------CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccC-CC
Confidence            3579999999999984 33         454332     44  788            9999987789999999999 99


Q ss_pred             cccccCCcccccccccCEEeC-CCCCCCCC--------------------------------------------------
Q 035693           63 IGSLENASGLFSLQYLQSLNL-GFTLFYGF--------------------------------------------------   91 (348)
Q Consensus        63 ~~~~~~~~~l~~~~~L~~L~l-~~~~~~~~--------------------------------------------------   91 (348)
                      .|.+|.  .++++++|+.|+| ++|.+++.                                                  
T Consensus       336 ~G~ip~--~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~  413 (876)
T 4ecn_A          336 KGRVPD--AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE  413 (876)
T ss_dssp             EEEECG--GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT
T ss_pred             CCcCch--HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc
Confidence            999997  9999999999999 66643222                                                  


Q ss_pred             -------------------------CCCC---CCCCCcEEecCCCCCCCC-cc----------eeecCCChhhhc--CCC
Q 035693           92 -------------------------PMPS---SLPRLVTLDLSSREPISG-FS----------WRLEIPNFNFFQ--NLT  130 (348)
Q Consensus        92 -------------------------~~~~---~~~~L~~L~l~~~~~~~~-~~----------~~~~~~~~~~~~--~l~  130 (348)
                                               ++|.   .+++|++|++++|.++.. ..          ....+|..  +.  +++
T Consensus       414 ~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~--l~f~~L~  491 (876)
T 4ecn_A          414 MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE--LSWSNLK  491 (876)
T ss_dssp             SCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC--CCGGGCT
T ss_pred             ccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh--hhhccCC
Confidence                                     0333   688999999999987531 00          00026665  55  899


Q ss_pred             CCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCcc-CCC-cchHHhhhcc-------CCCEEEcccCCCCCCChhh-
Q 035693          131 ELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCL-LSD-PINHHLANLL-------SLSVIRLRDNHAVSCQVPE-  200 (348)
Q Consensus       131 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~~-  200 (348)
                      +|+.|++++|.+....+   ..+.++++|++|++++|. +++ .+|..+..++       +|+.|++++|.. . .++. 
T Consensus       492 ~L~~L~Ls~N~l~~~iP---~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L-~-~ip~~  566 (876)
T 4ecn_A          492 DLTDVELYNCPNMTQLP---DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL-E-EFPAS  566 (876)
T ss_dssp             TCCEEEEESCTTCCSCC---GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC-C-BCCCH
T ss_pred             CCCEEECcCCCCCccCh---HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC-C-ccCCh
Confidence            99999999998877665   578889999999999998 887 7888777766       999999999854 4 5666 


Q ss_pred             -hhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCC-CcEEEcccCCCCCCCCccccCCC
Q 035693          201 -FVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSS-LRNLNLKNTSFSGKLPDSIGNLE  278 (348)
Q Consensus       201 -~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-L~~L~ls~n~~~~~~~~~l~~~~  278 (348)
                       .+..+++|++|++++|.+. .+| .+..+++|+.|++++|.+. ..+..+..+++ |++|++++|.+. .+|..+...+
T Consensus       567 ~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~  642 (876)
T 4ecn_A          567 ASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS  642 (876)
T ss_dssp             HHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred             hhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccc
Confidence             7889999999999999988 777 7888899999999999876 44445666777 999999998887 6676665543


Q ss_pred             --CCCEEeecCCccCCCCcccc---c--CCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCC
Q 035693          279 --NLASVDVSSCNFTRPIPTSM---A--NLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSN  346 (348)
Q Consensus       279 --~L~~L~L~~n~l~~~~~~~l---~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~  346 (348)
                        +|+.|++++|.+.+.+|...   .  ..++|+.|++++|++.. +|...+..+++|+.|+|++|.++ .+|..
T Consensus       643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~  715 (876)
T 4ecn_A          643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPEN  715 (876)
T ss_dssp             SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred             cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChH
Confidence              37777777777766444221   1  22356666666666653 55555544456666666666665 55554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.1e-33  Score=278.72  Aligned_cols=287  Identities=28%  Similarity=0.358  Sum_probs=211.9

Q ss_pred             CCEEEEeCCCCccccccccCCccccccc-ccCEEeCCCCCCCCCCCCC-----CCCCCcEEecCCCCCCCC---------
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQ-YLQSLNLGFTLFYGFPMPS-----SLPRLVTLDLSSREPISG---------  113 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~---------  113 (348)
                      .++++|++++| .+.+.+|.  .+.+++ +|+.|++++|.+++. ++.     .+++|++|++++|.+...         
T Consensus       343 ~~L~~L~Ls~n-~l~~~~p~--~l~~l~~~L~~L~Ls~N~l~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~  418 (768)
T 3rgz_A          343 RGLKVLDLSFN-EFSGELPE--SLTNLSASLLTLDLSSNNFSGP-ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS  418 (768)
T ss_dssp             TTCCEEECCSS-EEEECCCT--THHHHTTTCSEEECCSSEEEEE-CCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred             CCCCEEeCcCC-ccCccccH--HHHhhhcCCcEEEccCCCcCCC-cChhhhhcccCCccEEECCCCccccccCHHHhcCC
Confidence            56777777777 66666665  555555 666666666655543 222     134444444444433110         


Q ss_pred             ---------cceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCC
Q 035693          114 ---------FSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLS  184 (348)
Q Consensus       114 ---------~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  184 (348)
                               ......+|..  +.++++|+.|++++|.+.+..+   ..+..+++|++|++++|.+.+.+|..+..+++|+
T Consensus       419 ~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  493 (768)
T 3rgz_A          419 ELVSLHLSFNYLSGTIPSS--LGSLSKLRDLKLWLNMLEGEIP---QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN  493 (768)
T ss_dssp             TCCEEECCSSEEESCCCGG--GGGCTTCCEEECCSSCCCSCCC---GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             CCCEEECcCCcccCcccHH--HhcCCCCCEEECCCCcccCcCC---HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence                     0012233333  6666777777777777665444   4566777888888888888877777888888888


Q ss_pred             EEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCC-----------------
Q 035693          185 VIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSL-----------------  247 (348)
Q Consensus       185 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~-----------------  247 (348)
                      +|++++| ...+.++..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++....+                 
T Consensus       494 ~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~  572 (768)
T 3rgz_A          494 WISLSNN-RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG  572 (768)
T ss_dssp             EEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred             EEEccCC-ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence            8888888 4555677778888888888888888887888888888888888888886542211                 


Q ss_pred             -----------------------------------------------------CCCCCCCCCcEEEcccCCCCCCCCccc
Q 035693          248 -----------------------------------------------------PHFPKNSSLRNLNLKNTSFSGKLPDSI  274 (348)
Q Consensus       248 -----------------------------------------------------~~~~~~~~L~~L~ls~n~~~~~~~~~l  274 (348)
                                                                           ..+..+++|++|++++|++++.+|..+
T Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l  652 (768)
T 3rgz_A          573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI  652 (768)
T ss_dssp             CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence                                                                 123335789999999999999999999


Q ss_pred             cCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCC
Q 035693          275 GNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSN  346 (348)
Q Consensus       275 ~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~  346 (348)
                      +.+++|+.|+|++|.+++.+|..++.+++|+.|++++|++++.+|..+... ++|++||+++|+++|+||+.
T Consensus       653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL-TMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC-CCCSEEECCSSEEEEECCSS
T ss_pred             hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC-CCCCEEECcCCcccccCCCc
Confidence            999999999999999999999999999999999999999999899876554 89999999999999999974

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.6e-32  Score=255.11  Aligned_cols=282  Identities=21%  Similarity=0.186  Sum_probs=209.6

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCC----CCCCCCcEEecCCCCCCCCcceeecCCChh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMP----SSLPRLVTLDLSSREPISGFSWRLEIPNFN  124 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  124 (348)
                      +++++|+|++| .+.+..|.  .+.++++|++|++++|.+.+. ++    ..+++|++|++++|.+.      ...+.. 
T Consensus        30 ~~l~~L~Ls~n-~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~-i~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~-   98 (455)
T 3v47_A           30 AHVNYVDLSLN-SIAELNET--SFSRLQDLQFLKVEQQTPGLV-IRNNTFRGLSSLIILKLDYNQFL------QLETGA-   98 (455)
T ss_dssp             TTCCEEECCSS-CCCEECTT--TTSSCTTCCEEECCCCSTTCE-ECTTTTTTCTTCCEEECTTCTTC------EECTTT-
T ss_pred             CccCEEEecCC-ccCcCChh--HhccCccccEEECcCCcccce-ECcccccccccCCEEeCCCCccC------ccChhh-
Confidence            57899999999 77766565  788999999999999887643 32    27889999999998864      233444 


Q ss_pred             hhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHH-hhhccCCCEEEcccCCCCCCChhhhhh
Q 035693          125 FFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHH-LANLLSLSVIRLRDNHAVSCQVPEFVA  203 (348)
Q Consensus       125 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~l~  203 (348)
                       +.++++|++|++++|.+.+..+. ...+..+++|++|++++|.+.+..|.. +..+++|++|++++|.. ....+..+.
T Consensus        99 -~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~  175 (455)
T 3v47_A           99 -FNGLANLEVLTLTQCNLDGAVLS-GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV-KSICEEDLL  175 (455)
T ss_dssp             -TTTCTTCCEEECTTSCCBTHHHH-SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB-SCCCTTTSG
T ss_pred             -ccCcccCCEEeCCCCCCCccccC-cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc-cccChhhhh
Confidence             67788888888888877653321 012667778888888888877765554 67777788888777743 222121111


Q ss_pred             c----------------------------------C--------------------------------------------
Q 035693          204 N----------------------------------L--------------------------------------------  205 (348)
Q Consensus       204 ~----------------------------------l--------------------------------------------  205 (348)
                      .                                  +                                            
T Consensus       176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  255 (455)
T 3v47_A          176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS  255 (455)
T ss_dssp             GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred             ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc
Confidence            1                                  1                                            


Q ss_pred             -------------------CCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCC
Q 035693          206 -------------------LNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSF  266 (348)
Q Consensus       206 -------------------~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~  266 (348)
                                         ++|++|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|++|++++|.+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  335 (455)
T 3v47_A          256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL  335 (455)
T ss_dssp             TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence                               3455666666666555566677888899999998887766666788888999999999988


Q ss_pred             CCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCC
Q 035693          267 SGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISS  345 (348)
Q Consensus       267 ~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~  345 (348)
                      .+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+ ++...+..+++|++|++++|++++.+|.
T Consensus       336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc-CCHhHhccCCcccEEEccCCCcccCCCc
Confidence            86667788888999999999999988778888889999999999999987 5555555668899999999999988874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.5e-30  Score=243.21  Aligned_cols=275  Identities=22%  Similarity=0.206  Sum_probs=172.8

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF  125 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  125 (348)
                      .+++.|+|++| .+.+..+.  .+.++++|++|++++|.+++. .+.   .+++|++|++++|.+..       ++. ..
T Consensus        32 ~~l~~L~L~~n-~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~-------~~~-~~   99 (477)
T 2id5_A           32 TETRLLDLGKN-RIKTLNQD--EFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRLKL-------IPL-GV   99 (477)
T ss_dssp             TTCSEEECCSS-CCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCS-------CCT-TS
T ss_pred             CCCcEEECCCC-ccceECHh--HccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcCCc-------cCc-cc
Confidence            47888888888 77655554  778888888888888888775 333   77888888888887642       221 22


Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL  205 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l  205 (348)
                      +.++++|++|++++|.+....+   ..+..+++|++|++++|.+....+..+..+++|++|++++|. ++...+..+..+
T Consensus       100 ~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l  175 (477)
T 2id5_A          100 FTGLSNLTKLDISENKIVILLD---YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHL  175 (477)
T ss_dssp             STTCTTCCEEECTTSCCCEECT---TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTC
T ss_pred             ccCCCCCCEEECCCCccccCCh---hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhccc
Confidence            5677888888888887766544   456677778888887777777666677777777777777773 344445566777


Q ss_pred             CCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCC------------------------CCCCCCCCcEEEc
Q 035693          206 LNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLP------------------------HFPKNSSLRNLNL  261 (348)
Q Consensus       206 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~------------------------~~~~~~~L~~L~l  261 (348)
                      ++|+.|++++|.+....+..+..+++|+.|++++|.......+                        .+..+++|++|++
T Consensus       176 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  255 (477)
T 2id5_A          176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL  255 (477)
T ss_dssp             TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeEC
Confidence            7777777777776654444556666666666665543322222                        2333455555555


Q ss_pred             ccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccc
Q 035693          262 KNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT  340 (348)
Q Consensus       262 s~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  340 (348)
                      ++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+ ++...+..+++|++|++++|+++
T Consensus       256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT-LEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC-CCGGGBSCGGGCCEEECCSSCEE
T ss_pred             CCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce-eCHhHcCCCcccCEEEccCCCcc
Confidence            5555553333444555555555555555555445555555566666666665554 33333333455666666666554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=2.9e-30  Score=241.27  Aligned_cols=256  Identities=24%  Similarity=0.277  Sum_probs=196.0

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCC--CCCCCCCcEEecCCCCCCCCcceeecCCChhhh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPM--PSSLPRLVTLDLSSREPISGFSWRLEIPNFNFF  126 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  126 (348)
                      .+|++|+|++| .+.+..|.  .+.++++|+.|++++|.++....  ...+++|++|++++|.+..      ..+..  +
T Consensus        56 ~~L~~L~L~~n-~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~--~  124 (477)
T 2id5_A           56 PHLEELELNEN-IVSAVEPG--AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI------LLDYM--F  124 (477)
T ss_dssp             TTCCEEECTTS-CCCEECTT--TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE------ECTTT--T
T ss_pred             CCCCEEECCCC-ccCEeChh--hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc------CChhH--c
Confidence            68999999999 78766665  78899999999999998887521  1278999999999998642      23333  6


Q ss_pred             cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCC
Q 035693          127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLL  206 (348)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~  206 (348)
                      .++++|++|++++|.+....+   ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.. ....+..+..++
T Consensus       125 ~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i-~~~~~~~~~~l~  200 (477)
T 2id5_A          125 QDLYNLKSLEVGDNDLVYISH---RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLY  200 (477)
T ss_dssp             TTCTTCCEEEECCTTCCEECT---TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC-CEECTTCSCSCT
T ss_pred             cccccCCEEECCCCccceeCh---hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC-cEeChhhcccCc
Confidence            777788888888877766554   4566777777777777777766566677777777777776632 222222333333


Q ss_pred             ------------------------CCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcc
Q 035693          207 ------------------------NLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLK  262 (348)
Q Consensus       207 ------------------------~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls  262 (348)
                                              +|++|++++|.+....+..+..+++|+.|++++|.+.......+..+++|++|+++
T Consensus       201 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  280 (477)
T 2id5_A          201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV  280 (477)
T ss_dssp             TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECC
T ss_pred             ccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECC
Confidence                                    55666666666663333467888999999999999877777778889999999999


Q ss_pred             cCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccC
Q 035693          263 NTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIP  319 (348)
Q Consensus       263 ~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~  319 (348)
                      +|++.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|++.+...
T Consensus       281 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             SSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             CCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            999997778889999999999999999999777778889999999999999987543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=1.7e-30  Score=230.82  Aligned_cols=267  Identities=23%  Similarity=0.303  Sum_probs=162.7

Q ss_pred             hHHHHHHHHHhhhCccCCCCCCcccCCCC----CCCCCCccccceEeCC---------CCCEEEEeCCCCccccccccCC
Q 035693            3 SDQKLLLIQMKNSFIFDVDSTPPAKMSQW----SESTDCCDWNGVDCDE---------AGHVIGLDLSAEPILIGSLENA   69 (348)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w----~~~~~~~~~~~~~c~~---------~~~l~~L~ls~~~~~~~~~~~~   69 (348)
                      +++..+|..||..+..++.    .++..|    ..+.++|.|.|+.|..         ..+|++|+|+++ .+. .+|. 
T Consensus        26 ~~~~~aLl~~k~~~~~~~~----~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n-~l~-~lp~-   98 (328)
T 4fcg_A           26 RPYHDVLSQWQRHYNADRN----RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV-PLP-QFPD-   98 (328)
T ss_dssp             CCHHHHHHHHHHHHHHCCT----THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS-CCS-SCCS-
T ss_pred             chHHHHHHHHHHhccCCch----hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC-Cch-hcCh-
Confidence            4678899999998755654    677899    4588899999999842         256788888877 665 5665 


Q ss_pred             cccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhh
Q 035693           70 SGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEW  149 (348)
Q Consensus        70 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  149 (348)
                       .+.++++|++|++++|.++.  +|.                           .  +.++++|++|++++|.+...+   
T Consensus        99 -~l~~l~~L~~L~L~~n~l~~--lp~---------------------------~--~~~l~~L~~L~Ls~n~l~~lp---  143 (328)
T 4fcg_A           99 -QAFRLSHLQHMTIDAAGLME--LPD---------------------------T--MQQFAGLETLTLARNPLRALP---  143 (328)
T ss_dssp             -CGGGGTTCSEEEEESSCCCC--CCS---------------------------C--GGGGTTCSEEEEESCCCCCCC---
T ss_pred             -hhhhCCCCCEEECCCCCccc--hhH---------------------------H--HhccCCCCEEECCCCccccCc---
Confidence             56777777777777776663  333                           1  334444444444444444221   


Q ss_pred             hhhhCCCCCCcEEEccCccCCCcchHHhh---------hccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCC
Q 035693          150 CKAMSFLPNLQVLNLSNCLLSDPINHHLA---------NLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHG  220 (348)
Q Consensus       150 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  220 (348)
                       ..+..+++|++|++++|.+.+.+|..+.         .+++|++|++++|.. + .++..+..+++|++|++++|.+. 
T Consensus       144 -~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~-~lp~~l~~l~~L~~L~L~~N~l~-  219 (328)
T 4fcg_A          144 -ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-R-SLPASIANLQNLKSLKIRNSPLS-  219 (328)
T ss_dssp             -GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-C-CCCGGGGGCTTCCEEEEESSCCC-
T ss_pred             -HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-C-cchHhhcCCCCCCEEEccCCCCC-
Confidence             2344444555555554444443333322         355666666666532 2 34445556666666666666655 


Q ss_pred             cccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccC
Q 035693          221 KFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMAN  300 (348)
Q Consensus       221 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~  300 (348)
                      .+|..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..
T Consensus       220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~  299 (328)
T 4fcg_A          220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ  299 (328)
T ss_dssp             CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred             cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence            34445556666666666666555444445555666666666666666566666666666666777666666666666666


Q ss_pred             CCCCCEEeCCCCccC
Q 035693          301 LTQLFHLDFSSNHFS  315 (348)
Q Consensus       301 ~~~L~~L~l~~n~l~  315 (348)
                      +++|+.+++..+.+.
T Consensus       300 L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          300 LPANCIILVPPHLQA  314 (328)
T ss_dssp             SCTTCEEECCGGGSC
T ss_pred             ccCceEEeCCHHHHH
Confidence            666666666655443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=4.7e-29  Score=239.89  Aligned_cols=275  Identities=23%  Similarity=0.229  Sum_probs=169.7

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF  125 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  125 (348)
                      .++++|++++| .+.+..|.  .+.++++|++|++++|.+.+. .+.   .+++|++|++++|.+.      ...+..  
T Consensus        33 ~~l~~L~Ls~n-~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~--  100 (606)
T 3t6q_A           33 NSTECLEFSFN-VLPTIQNT--TFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLI------FMAETA--  100 (606)
T ss_dssp             TTCCEEECTTC-CCSEECTT--TSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCS------EECTTT--
T ss_pred             CcCcEEEccCC-ccCcCChh--HhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCccc------ccChhh--
Confidence            57899999999 77765555  788999999999999988775 333   7889999999998763      233444  


Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL  205 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l  205 (348)
                      +.++++|++|++++|++....+   ..+..+++|++|++++|.+.+.....+..+++|++|++++| .+....+..+..+
T Consensus       101 ~~~l~~L~~L~L~~n~i~~l~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l  176 (606)
T 3t6q_A          101 LSGPKALKHLFFIQTGISSIDF---IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSL  176 (606)
T ss_dssp             TSSCTTCCEEECTTSCCSCGGG---SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTT
T ss_pred             hcccccccEeeccccCcccCCc---chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhh
Confidence            7778888888888888776544   34677778888888888777643233444777778887777 3344445666777


Q ss_pred             CCCC--EEEccCCcCCCcccccccCC---------------------------------------------------CCc
Q 035693          206 LNLT--TLDLSQCDLHGKFPEKVLQV---------------------------------------------------PTL  232 (348)
Q Consensus       206 ~~L~--~L~l~~~~~~~~~~~~l~~~---------------------------------------------------~~L  232 (348)
                      ++|+  .|++++|.+.+..+..+...                                                   .+|
T Consensus       177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L  256 (606)
T 3t6q_A          177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV  256 (606)
T ss_dssp             TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred             cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCce
Confidence            7777  67777766553322221110                                                   034


Q ss_pred             cEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCC
Q 035693          233 ETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSN  312 (348)
Q Consensus       233 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n  312 (348)
                      +.|++++|.+.......|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus       257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  335 (606)
T 3t6q_A          257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN  335 (606)
T ss_dssp             EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred             eEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence            55555555544444444555556666666666555 45555555556666666666555544444555555555555555


Q ss_pred             ccCCccCchhhhhhcCCCeeecccCccc
Q 035693          313 HFSDPIPTLRLYMSRNLNYLNLSSNDLT  340 (348)
Q Consensus       313 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~  340 (348)
                      .+.+.++...+..+++|++|++++|.++
T Consensus       336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~  363 (606)
T 3t6q_A          336 TKRLELGTGCLENLENLRELDLSHDDIE  363 (606)
T ss_dssp             SSCCBCCSSTTTTCTTCCEEECCSSCCC
T ss_pred             CcccccchhhhhccCcCCEEECCCCccc
Confidence            5544343332333344444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=3.5e-29  Score=240.06  Aligned_cols=294  Identities=18%  Similarity=0.154  Sum_probs=203.5

Q ss_pred             CCCcccCCCCCCCCCCcc----ccceEeCC-----------------CCCEEEEeCCCCccccccccCCcccccccccCE
Q 035693           22 STPPAKMSQWSESTDCCD----WNGVDCDE-----------------AGHVIGLDLSAEPILIGSLENASGLFSLQYLQS   80 (348)
Q Consensus        22 ~~~~~~~~~w~~~~~~~~----~~~~~c~~-----------------~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~   80 (348)
                      |..|..++.|..+.+||.    |..+.|..                 ..+++.++++++ .+. .+|. ..+.++++|+.
T Consensus         3 g~~~~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~-~l~-~lp~-~~~~~l~~L~~   79 (597)
T 3oja_B            3 GQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMR-KLPA-ALLDSFRQVEL   79 (597)
T ss_dssp             --------CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSC-EES-EECT-HHHHHCCCCSE
T ss_pred             CcccccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCC-CCC-CcCH-HHHccCCCCcE
Confidence            456688999999888874    55444331                 146788888888 664 4553 24678999999


Q ss_pred             EeCCCCCCCCCCCC---CCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCC
Q 035693           81 LNLGFTLFYGFPMP---SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLP  157 (348)
Q Consensus        81 L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  157 (348)
                      |++++|.+++. .+   ..+++|++|++++|.+..      ..+..  +.++++|++|++++|.+...++   ..+..++
T Consensus        80 L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~------~~~~~--~~~l~~L~~L~L~~n~l~~l~~---~~~~~l~  147 (597)
T 3oja_B           80 LNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRY------LPPHV--FQNVPLLTVLVLERNDLSSLPR---GIFHNTP  147 (597)
T ss_dssp             EECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCC------CCTTT--TTTCTTCCEEECCSSCCCCCCT---TTTTTCT
T ss_pred             EECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCC------CCHHH--HcCCCCCCEEEeeCCCCCCCCH---HHhccCC
Confidence            99999999886 33   289999999999998742      23333  7889999999999999987665   3468899


Q ss_pred             CCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCC-----------------
Q 035693          158 NLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHG-----------------  220 (348)
Q Consensus       158 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----------------  220 (348)
                      +|++|++++|.+.+..+..+..+++|++|++++|.... ..   +..+++|+.|++++|.+.+                 
T Consensus       148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l  223 (597)
T 3oja_B          148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI  223 (597)
T ss_dssp             TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCC
T ss_pred             CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcc
Confidence            99999999999998888889999999999999985432 21   3344555555554444331                 


Q ss_pred             -cccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCccccc
Q 035693          221 -KFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMA  299 (348)
Q Consensus       221 -~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~  299 (348)
                       .++..  ..++|+.|++++|.+..  .+.+..+++|+.|++++|.+.+..|..++.+++|+.|+|++|.+.+ +|....
T Consensus       224 ~~~~~~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~  298 (597)
T 3oja_B          224 NVVRGP--VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQ  298 (597)
T ss_dssp             CEEECS--CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSS
T ss_pred             cccccc--cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccc
Confidence             11111  12467777777776543  3455567778888888888776667777777888888888888777 555556


Q ss_pred             CCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccc
Q 035693          300 NLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG  341 (348)
Q Consensus       300 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g  341 (348)
                      .+++|+.|++++|++.+ +|..+. .+++|++|+|++|.+++
T Consensus       299 ~l~~L~~L~Ls~N~l~~-i~~~~~-~l~~L~~L~L~~N~l~~  338 (597)
T 3oja_B          299 PIPTLKVLDLSHNHLLH-VERNQP-QFDRLENLYLDHNSIVT  338 (597)
T ss_dssp             CCTTCCEEECCSSCCCC-CGGGHH-HHTTCSEEECCSSCCCC
T ss_pred             cCCCCcEEECCCCCCCc-cCcccc-cCCCCCEEECCCCCCCC
Confidence            67788888888888764 665543 34777788887777763

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=7.6e-29  Score=238.41  Aligned_cols=285  Identities=25%  Similarity=0.252  Sum_probs=159.7

Q ss_pred             CEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcce----------
Q 035693           50 HVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSW----------  116 (348)
Q Consensus        50 ~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~----------  116 (348)
                      ++++|+++++ .+.+..+.  .+.++++|+.|++++|.++.  +|.   .+++|++|++++|.+......          
T Consensus       255 ~L~~L~l~~n-~l~~~~~~--~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  329 (606)
T 3t6q_A          255 SVESINLQKH-YFFNISSN--TFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH  329 (606)
T ss_dssp             EEEEEECTTC-CCSSCCTT--TTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred             ceeEEEeecC-ccCccCHH--HhccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence            5677777777 55543332  46667777777777776664  333   566677777776665321000          


Q ss_pred             --------eecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEc
Q 035693          117 --------RLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRL  188 (348)
Q Consensus       117 --------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  188 (348)
                              ...++. ..+.++++|++|++++|.+..... ....+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus       330 L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  407 (606)
T 3t6q_A          330 LSIKGNTKRLELGT-GCLENLENLRELDLSHDDIETSDC-CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL  407 (606)
T ss_dssp             EECCSCSSCCBCCS-STTTTCTTCCEEECCSSCCCEEEE-STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred             EECCCCCcccccch-hhhhccCcCCEEECCCCccccccC-cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence                    001110 124455555555555555544320 0123455566666666666655555555556666666666


Q ss_pred             ccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCC---CCCCCCCCCcEEEcccCC
Q 035693          189 RDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSL---PHFPKNSSLRNLNLKNTS  265 (348)
Q Consensus       189 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~L~ls~n~  265 (348)
                      ++|.......+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.....   ..+..+++|++|++++|.
T Consensus       408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~  487 (606)
T 3t6q_A          408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD  487 (606)
T ss_dssp             TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred             CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence            66533222222335556666666666666655555556666666666666666543211   234445666666666666


Q ss_pred             CCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccC
Q 035693          266 FSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGI  343 (348)
Q Consensus       266 ~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~i  343 (348)
                      +++..|..+..+++|++|++++|++.+..|..+..++.| .|++++|++++..|.. +..+++|++|++++|++++..
T Consensus       488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~N~~~c~c  563 (606)
T 3t6q_A          488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL-LPILSQQRTINLRQNPLDCTC  563 (606)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGG-HHHHHTSSEEECTTCCEECSG
T ss_pred             cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhh-cccCCCCCEEeCCCCCccccC
Confidence            665555566666666666666666666666666666666 6666666666533332 333466777777777665543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=7.3e-29  Score=225.88  Aligned_cols=289  Identities=18%  Similarity=0.156  Sum_probs=199.8

Q ss_pred             cCCCCCCCCCCcc----ccceEeC-----------------CCCCEEEEeCCCCccccccccCCcccccccccCEEeCCC
Q 035693           27 KMSQWSESTDCCD----WNGVDCD-----------------EAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGF   85 (348)
Q Consensus        27 ~~~~w~~~~~~~~----~~~~~c~-----------------~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~   85 (348)
                      .++.|..+.+||.    |..+.++                 ...+++.|+++++ .+. .+|. ..+.++++|+.|++++
T Consensus         2 ~~~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~-~l~-~l~~-~~~~~l~~L~~L~L~~   78 (390)
T 3o6n_A            2 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMR-KLPA-ALLDSFRQVELLNLND   78 (390)
T ss_dssp             -----CCEECBCC------EEEESCEECSSCCCCEESCSSGGGCCCSEEEEESC-EES-EECT-HHHHHCCCCSEEECTT
T ss_pred             CcCCCCCccceehhhhhhccceeeeeeecccccccccccccccCCceEEEecCC-chh-hCCh-hHhcccccCcEEECCC
Confidence            3567777777774    4333222                 0157888999888 654 4554 2468899999999999


Q ss_pred             CCCCCCCC--CCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEE
Q 035693           86 TLFYGFPM--PSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLN  163 (348)
Q Consensus        86 ~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  163 (348)
                      |.+++...  ...+++|++|++++|.+..      ..+..  +.++++|++|++++|++...+.   ..+..+++|++|+
T Consensus        79 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~--~~~l~~L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~  147 (390)
T 3o6n_A           79 LQIEEIDTYAFAYAHTIQKLYMGFNAIRY------LPPHV--FQNVPLLTVLVLERNDLSSLPR---GIFHNTPKLTTLS  147 (390)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCC------CCTTT--TTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEE
T ss_pred             CcccccChhhccCCCCcCEEECCCCCCCc------CCHHH--hcCCCCCCEEECCCCccCcCCH---HHhcCCCCCcEEE
Confidence            99887621  1289999999999998642      23333  7889999999999999987665   3467889999999


Q ss_pred             ccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCC------------------ccccc
Q 035693          164 LSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHG------------------KFPEK  225 (348)
Q Consensus       164 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------------------~~~~~  225 (348)
                      +++|.+.+..+..+..+++|++|++++|.... .   .+..+++|+++++++|.+..                  ..+. 
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~---~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~-  222 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG-  222 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C---CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC-
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCCc-c---ccccccccceeecccccccccCCCCcceEEECCCCeeeeccc-
Confidence            99999988777788899999999999985432 2   13344445444444443321                  1121 


Q ss_pred             ccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCC
Q 035693          226 VLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLF  305 (348)
Q Consensus       226 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~  305 (348)
                       ...++|+.|++++|.+..  .+.+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+ ++.....+++|+
T Consensus       223 -~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~  298 (390)
T 3o6n_A          223 -PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLK  298 (390)
T ss_dssp             -CCCSSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCC
T ss_pred             -cccccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCC
Confidence             123567777777776543  3455667788888888888876667777778888888888888877 555556678888


Q ss_pred             EEeCCCCccCCccCchhhhhhcCCCeeecccCccc
Q 035693          306 HLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT  340 (348)
Q Consensus       306 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  340 (348)
                      +|++++|++.+ +|..+.. +++|++|++++|.++
T Consensus       299 ~L~L~~n~l~~-~~~~~~~-l~~L~~L~L~~N~i~  331 (390)
T 3o6n_A          299 VLDLSHNHLLH-VERNQPQ-FDRLENLYLDHNSIV  331 (390)
T ss_dssp             EEECCSSCCCC-CGGGHHH-HTTCSEEECCSSCCC
T ss_pred             EEECCCCccee-cCccccc-cCcCCEEECCCCccc
Confidence            88888888765 5554433 377888888888876

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=8.3e-28  Score=213.98  Aligned_cols=279  Identities=20%  Similarity=0.240  Sum_probs=183.3

Q ss_pred             CccccceEeCCC----------CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEE
Q 035693           37 CCDWNGVDCDEA----------GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTL  103 (348)
Q Consensus        37 ~~~~~~~~c~~~----------~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L  103 (348)
                      .|.|+.+.|...          .+++.|++++| .+.+..+.  .+.++++|++|++++|.+++. .+.   .+++|++|
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n-~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  105 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNN-KITEIKDG--DFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERL  105 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSS-CCCCBCTT--TTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEE
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCC-cCCEeChh--hhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCEE
Confidence            356777776531          46777888877 66544333  567778888888887777765 233   67778888


Q ss_pred             ecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCC--cchHHhhhcc
Q 035693          104 DLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSD--PINHHLANLL  181 (348)
Q Consensus       104 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~  181 (348)
                      ++++|.++       .++..  +  .++|++|++++|.+....+   ..+..+++|++|++++|.+..  ..+..+..++
T Consensus       106 ~Ls~n~l~-------~l~~~--~--~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  171 (330)
T 1xku_A          106 YLSKNQLK-------ELPEK--M--PKTLQELRVHENEITKVRK---SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK  171 (330)
T ss_dssp             ECCSSCCS-------BCCSS--C--CTTCCEEECCSSCCCBBCH---HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred             ECCCCcCC-------ccChh--h--cccccEEECCCCcccccCH---hHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence            88877653       23322  1  2577888888877776554   456777788888888777753  4556677777


Q ss_pred             CCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEc
Q 035693          182 SLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNL  261 (348)
Q Consensus       182 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  261 (348)
                      +|++|++++|....  ++..+  .++|++|++++|.+.+..+..+..+++|+.|++++|.+.......+..+++|++|++
T Consensus       172 ~L~~L~l~~n~l~~--l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  247 (330)
T 1xku_A          172 KLSYIRIADTNITT--IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL  247 (330)
T ss_dssp             TCCEEECCSSCCCS--CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred             CcCEEECCCCcccc--CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEEC
Confidence            88888887774322  22222  267778888887777655667777778888888877765555556666777888888


Q ss_pred             ccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccC------CCCCCEEeCCCCccCC-ccCchhhhhhcCCCeeec
Q 035693          262 KNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMAN------LTQLFHLDFSSNHFSD-PIPTLRLYMSRNLNYLNL  334 (348)
Q Consensus       262 s~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~------~~~L~~L~l~~n~l~~-~~~~~~~~~~~~L~~L~l  334 (348)
                      ++|.++ .+|..+..+++|++|++++|++++..+..+..      .+.++.+++++|++.. .++...+..+++++.++|
T Consensus       248 ~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L  326 (330)
T 1xku_A          248 NNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL  326 (330)
T ss_dssp             CSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC
T ss_pred             CCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEe
Confidence            888777 66667777777888888888777754444432      3567778888877753 233334444567777777


Q ss_pred             ccCc
Q 035693          335 SSND  338 (348)
Q Consensus       335 ~~n~  338 (348)
                      ++|+
T Consensus       327 ~~N~  330 (330)
T 1xku_A          327 GNYK  330 (330)
T ss_dssp             ----
T ss_pred             cccC
Confidence            7763

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=1.9e-29  Score=243.36  Aligned_cols=277  Identities=18%  Similarity=0.268  Sum_probs=182.7

Q ss_pred             CCEEEEeCCCCcccccc-----------------ccCCcccc--cccccCEEeCCCCCCCCCCCCC---CCCCCcEEecC
Q 035693           49 GHVIGLDLSAEPILIGS-----------------LENASGLF--SLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLS  106 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~-----------------~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~  106 (348)
                      .++++|+|++| .+.+.                 +|.  .++  ++++|++|++++|.+.+. +|.   .+++|++|+++
T Consensus       206 ~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~--~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          206 TKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTE--DLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVA  281 (636)
T ss_dssp             TTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSCCEEECT
T ss_pred             cCCCEEECcCC-ccccccccccccccccchhcccCch--hhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCCCEEECc
Confidence            78999999999 78775                 887  778  999999999999998886 776   78999999999


Q ss_pred             CCC-CCCCcceee-cCCChhhhcC------CCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhh
Q 035693          107 SRE-PISGFSWRL-EIPNFNFFQN------LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLA  178 (348)
Q Consensus       107 ~~~-~~~~~~~~~-~~~~~~~~~~------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  178 (348)
                      +|. ++      . .+|..  +.+      +++|++|++++|+++..+.  ...+..+++|++|++++|.+.+.+| .+.
T Consensus       282 ~n~~l~------~~~lp~~--~~~L~~~~~l~~L~~L~L~~n~l~~ip~--~~~l~~l~~L~~L~L~~N~l~g~ip-~~~  350 (636)
T 4eco_A          282 CNRGIS------GEQLKDD--WQALADAPVGEKIQIIYIGYNNLKTFPV--ETSLQKMKKLGMLECLYNQLEGKLP-AFG  350 (636)
T ss_dssp             TCTTSC------HHHHHHH--HHHHHHSGGGGTCCEEECCSSCCSSCCC--HHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred             CCCCCc------cccchHH--HHhhhccccCCCCCEEECCCCcCCccCc--hhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence            997 53      2 34433  443      4888999999888874332  0157788888888888888886677 777


Q ss_pred             hccCCCEEEcccCCCCCCChhhhhhcCCC-CCEEEccCCcCCCcccccccCCC--CccEEEccCCCCCCCCCCCCC----
Q 035693          179 NLLSLSVIRLRDNHAVSCQVPEFVANLLN-LTTLDLSQCDLHGKFPEKVLQVP--TLETLDLSYNSLLQGSLPHFP----  251 (348)
Q Consensus       179 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~l~~~~~~~~~----  251 (348)
                      .+++|++|++++|...  .++..+..+++ |++|++++|.+. .+|..+...+  +|+.|++++|.+....+..+.    
T Consensus       351 ~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~  427 (636)
T 4eco_A          351 SEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP  427 (636)
T ss_dssp             EEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred             CCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence            7778888888777433  45566677777 777777777776 5666555443  666666666665443333333    


Q ss_pred             ---CCCCCcEEEcccCCCCCCCCcc-ccCCC-------------------------------CCCEEeecCCccCCCCcc
Q 035693          252 ---KNSSLRNLNLKNTSFSGKLPDS-IGNLE-------------------------------NLASVDVSSCNFTRPIPT  296 (348)
Q Consensus       252 ---~~~~L~~L~ls~n~~~~~~~~~-l~~~~-------------------------------~L~~L~L~~n~l~~~~~~  296 (348)
                         ..++|++|++++|.++ .+|.. +..++                               +|+.|++++|.+.. +|.
T Consensus       428 ~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~  505 (636)
T 4eco_A          428 TPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSD  505 (636)
T ss_dssp             SCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-CCG
T ss_pred             ccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-cCh
Confidence               3344455555555444 22221 22233                               55556666665553 444


Q ss_pred             ccc--CCCCCCEEeCCCCccCCccCchhhhhhcCCCeeec------ccCcccccCCCCC
Q 035693          297 SMA--NLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNL------SSNDLTGGISSNI  347 (348)
Q Consensus       297 ~l~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l------~~n~l~g~ip~~~  347 (348)
                      .+.  .+++|+.|++++|++.+ +|..+.. +++|++|+|      ++|.+.+.+|..+
T Consensus       506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~-l~~L~~L~Ls~N~~ls~N~l~~~~p~~l  562 (636)
T 4eco_A          506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLN-SSTLKGFGIRNQRDAQGNRTLREWPEGI  562 (636)
T ss_dssp             GGSTTTCTTCCEEECCSSCCSS-CCCGGGG-CSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred             hhhhccCCCcCEEECCCCCCCC-cChhhhc-CCCCCEEECCCCcccccCcccccChHHH
Confidence            444  56666666666666665 5554443 356666666      3455666666543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=2.6e-28  Score=234.68  Aligned_cols=45  Identities=20%  Similarity=0.180  Sum_probs=26.5

Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCc
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDP  172 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  172 (348)
                      +.++++|++|++++|.+....  ++..+.++++|++|++++|.+++.
T Consensus       124 ~~~l~~L~~L~L~~n~l~~~~--lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A          124 IGQLITLKKLNVAHNFIHSCK--LPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             CTTCTTCCEEECCSSCCCCCC--CCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             cCCCCCCCEEeCCCCccccee--chHhHhhcCCCCEEEccCCcceec
Confidence            555666666666666655421  113566677777777777665543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=6.3e-28  Score=224.09  Aligned_cols=256  Identities=25%  Similarity=0.279  Sum_probs=191.5

Q ss_pred             cccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhh
Q 035693           76 QYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA  152 (348)
Q Consensus        76 ~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  152 (348)
                      ++|+.|++++|.+++. .+.   .+++|++|++++|.+..     ...+..  +.++++|++|++++|++....+   ..
T Consensus        30 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~-----~i~~~~--~~~l~~L~~L~Ls~n~l~~~~~---~~   98 (455)
T 3v47_A           30 AHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGL-----VIRNNT--FRGLSSLIILKLDYNQFLQLET---GA   98 (455)
T ss_dssp             TTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTC-----EECTTT--TTTCTTCCEEECTTCTTCEECT---TT
T ss_pred             CccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccc-----eECccc--ccccccCCEEeCCCCccCccCh---hh
Confidence            7899999999999886 343   89999999999997631     111233  7889999999999999987765   56


Q ss_pred             hCCCCCCcEEEccCccCCCcchHH--hhhccCCCEEEcccCCCCCCChhh-hhhcCCCCCEEEccCCcCCCcccccccC-
Q 035693          153 MSFLPNLQVLNLSNCLLSDPINHH--LANLLSLSVIRLRDNHAVSCQVPE-FVANLLNLTTLDLSQCDLHGKFPEKVLQ-  228 (348)
Q Consensus       153 ~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~-  228 (348)
                      +..+++|++|++++|.+.+..+..  +..+++|++|++++|.. ....+. .+..+++|++|++++|.+.+..+..+.. 
T Consensus        99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  177 (455)
T 3v47_A           99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI-KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF  177 (455)
T ss_dssp             TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC-CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred             ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCcc-CccCcccccCCCCcccEEeCCCCcccccChhhhhcc
Confidence            889999999999999998766655  88999999999999954 444343 4889999999999999887654443322 


Q ss_pred             ---------------------------------CCCccEEEccCCCCC--------------------------------
Q 035693          229 ---------------------------------VPTLETLDLSYNSLL--------------------------------  243 (348)
Q Consensus       229 ---------------------------------~~~L~~L~l~~~~l~--------------------------------  243 (348)
                                                       +++|++|++++|.+.                                
T Consensus       178 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  257 (455)
T 3v47_A          178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG  257 (455)
T ss_dssp             TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT
T ss_pred             ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc
Confidence                                             245666666666432                                


Q ss_pred             -------------------------------CCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCC
Q 035693          244 -------------------------------QGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR  292 (348)
Q Consensus       244 -------------------------------~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~  292 (348)
                                                     ......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  337 (455)
T 3v47_A          258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS  337 (455)
T ss_dssp             CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC
Confidence                                           2223335556777888888887776666677777888888888888877


Q ss_pred             CCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCC
Q 035693          293 PIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISS  345 (348)
Q Consensus       293 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~  345 (348)
                      ..+..+..+++|++|++++|++.+..+..+. .+++|++|++++|.+++ +|.
T Consensus       338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~-~~~  388 (455)
T 3v47_A          338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKS-VPD  388 (455)
T ss_dssp             ECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSC-CCT
T ss_pred             cChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCcccc-CCH
Confidence            6677777788888888888888764454443 34788888888888874 444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=2.8e-27  Score=211.98  Aligned_cols=260  Identities=20%  Similarity=0.259  Sum_probs=143.0

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN  128 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  128 (348)
                      +++++|++++| .+.+ ++   .+.++++|++|++++|.+++......+++|++|++++|.+...       +.   +..
T Consensus        66 ~~L~~L~l~~n-~i~~-~~---~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~-------~~---~~~  130 (347)
T 4fmz_A           66 TNLEYLNLNGN-QITD-IS---PLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI-------SP---LAN  130 (347)
T ss_dssp             TTCCEEECCSS-CCCC-CG---GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC-------GG---GTT
T ss_pred             CCccEEEccCC-cccc-ch---hhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc-------hh---hcc
Confidence            67888888888 6643 33   3777888888888888777753334788888888888875421       11   445


Q ss_pred             CCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCC--------------
Q 035693          129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAV--------------  194 (348)
Q Consensus       129 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--------------  194 (348)
                      +++|+.|++++|......+    .+..+++|++|++++|.+.+..+  +..+++|++|++++|...              
T Consensus       131 l~~L~~L~l~~n~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L  204 (347)
T 4fmz_A          131 LTKMYSLNLGANHNLSDLS----PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYF  204 (347)
T ss_dssp             CTTCCEEECTTCTTCCCCG----GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEE
T ss_pred             CCceeEEECCCCCCccccc----chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCcccee
Confidence            5566666665554332221    24455555555555555444222  444455555555554221              


Q ss_pred             -------CCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCC
Q 035693          195 -------SCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFS  267 (348)
Q Consensus       195 -------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~  267 (348)
                             ....+  +..+++|++|++++|.+.+. +. +..+++|++|++++|.+..  .+.+..+++|++|++++|.++
T Consensus       205 ~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~l~~n~l~  278 (347)
T 4fmz_A          205 TAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS  278 (347)
T ss_dssp             ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCC
T ss_pred             ecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC--ChhHhcCCCcCEEEccCCccC
Confidence                   11111  44555555555555555422 22 4555566666666655432  234445556666666666555


Q ss_pred             CCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccc
Q 035693          268 GKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT  340 (348)
Q Consensus       268 ~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  340 (348)
                      + + ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..+   ...+++|++|++++|.|+
T Consensus       279 ~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          279 D-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             C-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred             C-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC---hhhhhccceeehhhhccc
Confidence            3 2 234555666666666666665555555566666666666666655333   223356666666666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=2.9e-28  Score=234.37  Aligned_cols=167  Identities=23%  Similarity=0.196  Sum_probs=77.3

Q ss_pred             HHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCccc-ccccCCCCccEEEccCCCCCCCCCCCCCCC
Q 035693          175 HHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFP-EKVLQVPTLETLDLSYNSLLQGSLPHFPKN  253 (348)
Q Consensus       175 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~  253 (348)
                      ..+..+++|++|++++|...  ..+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.......+..+
T Consensus       370 ~~~~~~~~L~~L~L~~n~l~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  447 (606)
T 3vq2_A          370 YSDLGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL  447 (606)
T ss_dssp             HHHHCCSCCCEEECCSCSEE--EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred             hhhccCCcccEeECCCCccc--cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC
Confidence            33444444444444444211  112233344444444444444433322 234444555555555554433333344444


Q ss_pred             CCCcEEEcccCCCCC-CCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCee
Q 035693          254 SSLRNLNLKNTSFSG-KLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYL  332 (348)
Q Consensus       254 ~~L~~L~ls~n~~~~-~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  332 (348)
                      ++|++|++++|.+.+ .+|..++.+++|++|++++|.+.+..|..+..+++|+.|++++|++.+..|..+. .+++|++|
T Consensus       448 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L  526 (606)
T 3vq2_A          448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN-QLYSLSTL  526 (606)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT-TCTTCCEE
T ss_pred             CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc-CCCcCCEE
Confidence            555555555555443 1344445555555555555555554444555555555555555555543333322 22455555


Q ss_pred             ecccCcccccCCC
Q 035693          333 NLSSNDLTGGISS  345 (348)
Q Consensus       333 ~l~~n~l~g~ip~  345 (348)
                      ++++|+++ .+|.
T Consensus       527 ~l~~N~l~-~~p~  538 (606)
T 3vq2_A          527 DCSFNRIE-TSKG  538 (606)
T ss_dssp             ECTTSCCC-CEES
T ss_pred             ECCCCcCc-ccCH
Confidence            55555554 4443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=5.1e-28  Score=215.54  Aligned_cols=276  Identities=18%  Similarity=0.215  Sum_probs=147.2

Q ss_pred             ccccceEeCCC----------CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEe
Q 035693           38 CDWNGVDCDEA----------GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLD  104 (348)
Q Consensus        38 ~~~~~~~c~~~----------~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~  104 (348)
                      |.|..+.|...          +++++|++++| .+.+..+.  .+.++++|+.|++++|.+++. .+.   .+++|++|+
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n-~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNN-DISELRKD--DFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLY  108 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSS-CCCEECTT--TTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEE
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCC-cCCccCHh--HhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEE
Confidence            56666666421          35666666666 55433332  456666666666666666554 222   556666666


Q ss_pred             cCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCC--cchHHhhhccC
Q 035693          105 LSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSD--PINHHLANLLS  182 (348)
Q Consensus       105 l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~  182 (348)
                      +++|.+.       .+|..  +.  ++|++|++++|++....+   ..+..+++|++|++++|.+..  ..+..+..+ +
T Consensus       109 L~~n~l~-------~l~~~--~~--~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~  173 (332)
T 2ft3_A          109 ISKNHLV-------EIPPN--LP--SSLVELRIHDNRIRKVPK---GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K  173 (332)
T ss_dssp             CCSSCCC-------SCCSS--CC--TTCCEEECCSSCCCCCCS---GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred             CCCCcCC-------ccCcc--cc--ccCCEEECCCCccCccCH---hHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence            6666543       22222  11  466666666666655443   335556666666666666542  334444444 6


Q ss_pred             CCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcc
Q 035693          183 LSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLK  262 (348)
Q Consensus       183 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls  262 (348)
                      |++|++++|....  ++..+  .++|++|++++|.+.+..+..+..+++|+.|++++|.+.......+..+++|++|+++
T Consensus       174 L~~L~l~~n~l~~--l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  249 (332)
T 2ft3_A          174 LNYLRISEAKLTG--IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD  249 (332)
T ss_dssp             CSCCBCCSSBCSS--CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred             cCEEECcCCCCCc--cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECC
Confidence            6666666653221  22221  1456666666666654444555666666666666666544444445556666666666


Q ss_pred             cCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccC------CCCCCEEeCCCCccCC-ccCchhhhhhcCCCeeecc
Q 035693          263 NTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMAN------LTQLFHLDFSSNHFSD-PIPTLRLYMSRNLNYLNLS  335 (348)
Q Consensus       263 ~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~------~~~L~~L~l~~n~l~~-~~~~~~~~~~~~L~~L~l~  335 (348)
                      +|.+. .+|..+..+++|++|++++|.+++..+..+..      .+.|+.+++++|++.. .++...+..+++|+.++++
T Consensus       250 ~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~  328 (332)
T 2ft3_A          250 NNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG  328 (332)
T ss_dssp             SSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred             CCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcc
Confidence            66665 55555666666666666666666543333332      2456666666666541 1233333444566666666


Q ss_pred             cC
Q 035693          336 SN  337 (348)
Q Consensus       336 ~n  337 (348)
                      +|
T Consensus       329 ~n  330 (332)
T 2ft3_A          329 NY  330 (332)
T ss_dssp             --
T ss_pred             cc
Confidence            55

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=3.8e-28  Score=229.34  Aligned_cols=84  Identities=23%  Similarity=0.099  Sum_probs=61.8

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN  128 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  128 (348)
                      .++++|++++| .+.+..|.  .+.++++|++|++++|.++..... .+++|++|++++|.+..     ..+|..  +.+
T Consensus        45 ~~L~~L~Ls~n-~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~-----~~~p~~--~~~  113 (520)
T 2z7x_B           45 SKLRILIISHN-RIQYLDIS--VFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDA-----LPICKE--FGN  113 (520)
T ss_dssp             TTCCEEECCSS-CCCEEEGG--GGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSS-----CCCCGG--GGG
T ss_pred             ccccEEecCCC-ccCCcChH--HhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCcccc-----ccchhh--hcc
Confidence            67888999988 77766665  788888999999988888864222 78888899998887642     233433  677


Q ss_pred             CCCCcEEEccCcCCC
Q 035693          129 LTELRELYLDNVDLS  143 (348)
Q Consensus       129 l~~L~~L~l~~~~~~  143 (348)
                      +++|++|++++|.+.
T Consensus       114 l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B          114 MSQLKFLGLSTTHLE  128 (520)
T ss_dssp             CTTCCEEEEEESSCC
T ss_pred             CCcceEEEecCcccc
Confidence            777777777777664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=6.1e-29  Score=219.54  Aligned_cols=236  Identities=23%  Similarity=0.311  Sum_probs=201.7

Q ss_pred             CCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccC-cCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHH
Q 035693           98 PRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDN-VDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHH  176 (348)
Q Consensus        98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  176 (348)
                      .++++|++++|.+..    ...+|..  +.++++|++|++++ |.+.+..+   ..+..+++|++|++++|.+.+.+|..
T Consensus        50 ~~l~~L~L~~~~l~~----~~~~~~~--l~~l~~L~~L~L~~~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l~~~~p~~  120 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPK----PYPIPSS--LANLPYLNFLYIGGINNLVGPIP---PAIAKLTQLHYLYITHTNVSGAIPDF  120 (313)
T ss_dssp             CCEEEEEEECCCCSS----CEECCGG--GGGCTTCSEEEEEEETTEESCCC---GGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred             ceEEEEECCCCCccC----CcccChh--HhCCCCCCeeeCCCCCcccccCC---hhHhcCCCCCEEECcCCeeCCcCCHH
Confidence            466777777776531    0145554  88999999999994 88876555   56888999999999999999889999


Q ss_pred             hhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCC-CccEEEccCCCCCCCCCCCCCCCCC
Q 035693          177 LANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVP-TLETLDLSYNSLLQGSLPHFPKNSS  255 (348)
Q Consensus       177 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~  255 (348)
                      +..+++|++|++++| .+.+..+..+..+++|++|++++|.+.+..|..+..++ +|+.|++++|.+....+..+..+. 
T Consensus       121 ~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-  198 (313)
T 1ogq_A          121 LSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-  198 (313)
T ss_dssp             GGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-
T ss_pred             HhCCCCCCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-
Confidence            999999999999999 45556788899999999999999999888999999998 999999999988666666666665 


Q ss_pred             CcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecc
Q 035693          256 LRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLS  335 (348)
Q Consensus       256 L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~  335 (348)
                      |++|++++|.+.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|++.+.+|..+.. +++|++|+++
T Consensus       199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls  276 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVS  276 (313)
T ss_dssp             CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGG-CTTCCEEECC
T ss_pred             ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhc-CcCCCEEECc
Confidence            99999999999888888899999999999999999985555 778899999999999999878877654 4899999999


Q ss_pred             cCcccccCCCC
Q 035693          336 SNDLTGGISSN  346 (348)
Q Consensus       336 ~n~l~g~ip~~  346 (348)
                      +|+++|.+|..
T Consensus       277 ~N~l~~~ip~~  287 (313)
T 1ogq_A          277 FNNLCGEIPQG  287 (313)
T ss_dssp             SSEEEEECCCS
T ss_pred             CCcccccCCCC
Confidence            99999999974

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=1.5e-27  Score=227.74  Aligned_cols=141  Identities=26%  Similarity=0.284  Sum_probs=82.5

Q ss_pred             cCCCCCEEEccCCcCCCccc-ccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCC-CCCCccccCCCCCC
Q 035693          204 NLLNLTTLDLSQCDLHGKFP-EKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFS-GKLPDSIGNLENLA  281 (348)
Q Consensus       204 ~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~-~~~~~~l~~~~~L~  281 (348)
                      .+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.......+..+++|++|++++|.+. +.+|..+..+++|+
T Consensus       394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~  473 (570)
T 2z63_A          394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT  473 (570)
T ss_dssp             TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence            34444444444444332222 23444555555555555544444444555666666666666654 34556666667777


Q ss_pred             EEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCC
Q 035693          282 SVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISS  345 (348)
Q Consensus       282 ~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~  345 (348)
                      +|++++|.+.+..|..+..+++|+.|++++|++.+..+ ..+..+++|++|++++|++++..|.
T Consensus       474 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH-HHhhcccCCcEEEecCCcccCCCcc
Confidence            77777777776556666677777777777777766333 3333446777777777777776664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=1.2e-27  Score=227.92  Aligned_cols=139  Identities=22%  Similarity=0.207  Sum_probs=88.1

Q ss_pred             hcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCC--CCCCCCCCCCcEEEcccCCCCCCCCc-cccCCCC
Q 035693          203 ANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGS--LPHFPKNSSLRNLNLKNTSFSGKLPD-SIGNLEN  279 (348)
Q Consensus       203 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~--~~~~~~~~~L~~L~ls~n~~~~~~~~-~l~~~~~  279 (348)
                      ..+++|++|++++|.+.+..|..+..+++|+.|++++|.+....  +..+..+++|++|++++|.+++.+|. .+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            45667777777777777666777777777777777777664422  13456677777777777777653443 3555666


Q ss_pred             CCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCC
Q 035693          280 LASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSN  346 (348)
Q Consensus       280 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~  346 (348)
                      |++|++++|.+.+..+..+.  ++|+.|++++|++.. +|..+. .+++|++|++++|+++ .+|..
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~-~l~~L~~L~L~~N~l~-~l~~~  491 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVT-HLQALQELNVASNQLK-SVPDG  491 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTT-SSCCCSEEECCSSCCC-CCCTT
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhc-CCCCCCEEECCCCCCC-CCCHH
Confidence            77777777766654444332  466666666666653 555544 3366666666666666 55543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=1.8e-27  Score=231.87  Aligned_cols=275  Identities=24%  Similarity=0.258  Sum_probs=138.0

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF  125 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  125 (348)
                      .++++|++++| .+.+..+.  .+.++++|++|++++|.+++. .+.   .+++|++|++++|.+.       .++. ..
T Consensus        25 ~~l~~L~Ls~n-~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-------~l~~-~~   92 (680)
T 1ziw_A           25 TNITVLNLTHN-QLRRLPAA--NFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELS-------QLSD-KT   92 (680)
T ss_dssp             TTCSEEECCSS-CCCCCCGG--GGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCC-------CCCT-TT
T ss_pred             CCCcEEECCCC-CCCCcCHH--HHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccC-------ccCh-hh
Confidence            45677777776 55543332  466666777777766666654 333   5666666666666543       1221 12


Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhh--
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVA--  203 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~--  203 (348)
                      +.++++|++|++++|++....+   ..+..+++|++|++++|.+.+..+..+..+++|++|++++|. ++...+..+.  
T Consensus        93 ~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~  168 (680)
T 1ziw_A           93 FAFCTNLTELHLMSNSIQKIKN---NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIF  168 (680)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCS---CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGG
T ss_pred             hccCCCCCEEECCCCccCccCh---hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhcc
Confidence            4556666666666666655443   345556666666666666555445555555666666666552 2222233222  


Q ss_pred             cCCCCCEEEccCCcCCCccc---------------------------------------------------ccccCCC--
Q 035693          204 NLLNLTTLDLSQCDLHGKFP---------------------------------------------------EKVLQVP--  230 (348)
Q Consensus       204 ~l~~L~~L~l~~~~~~~~~~---------------------------------------------------~~l~~~~--  230 (348)
                      .+++|++|++++|.+.+..+                                                   ..+..++  
T Consensus       169 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~  248 (680)
T 1ziw_A          169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT  248 (680)
T ss_dssp             TTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGS
T ss_pred             ccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcC
Confidence            23455555555555443333                                                   2333222  


Q ss_pred             CccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCC-----CCcc----cccCC
Q 035693          231 TLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR-----PIPT----SMANL  301 (348)
Q Consensus       231 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~-----~~~~----~l~~~  301 (348)
                      +|+.|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|+.|++++|....     .+|.    .+..+
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l  328 (680)
T 1ziw_A          249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL  328 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred             CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence            24444444444433333334444445555555444444344444444455555554433221     1111    33445


Q ss_pred             CCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccc
Q 035693          302 TQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT  340 (348)
Q Consensus       302 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  340 (348)
                      ++|+.|++++|.+.+..+ ..+..+++|++|++++|.++
T Consensus       329 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~  366 (680)
T 1ziw_A          329 KCLEHLNMEDNDIPGIKS-NMFTGLINLKYLSLSNSFTS  366 (680)
T ss_dssp             TTCCEEECCSCCBCCCCT-TTTTTCTTCCEEECTTCBSC
T ss_pred             CCCCEEECCCCccCCCCh-hHhccccCCcEEECCCCchh
Confidence            556666666666555222 22333456666666666543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=1.5e-26  Score=207.28  Aligned_cols=265  Identities=25%  Similarity=0.318  Sum_probs=194.8

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN  128 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  128 (348)
                      +++++|+++++ .+. .++   .+..+++|++|++++|.+++......+++|++|++++|.++.       +   ..+.+
T Consensus        44 ~~L~~L~l~~~-~i~-~~~---~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-------~---~~~~~  108 (347)
T 4fmz_A           44 ESITKLVVAGE-KVA-SIQ---GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-------I---SALQN  108 (347)
T ss_dssp             TTCSEEECCSS-CCC-CCT---TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-------C---GGGTT
T ss_pred             ccccEEEEeCC-ccc-cch---hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-------c---hHHcC
Confidence            68999999999 664 344   588999999999999999886444589999999999998642       2   23789


Q ss_pred             CCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCC
Q 035693          129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNL  208 (348)
Q Consensus       129 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L  208 (348)
                      +++|++|++++|.+.+...     +..+++|++|++++|......+ .+..+++|++|++++|.... ..+  +..+++|
T Consensus       109 l~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~--~~~l~~L  179 (347)
T 4fmz_A          109 LTNLRELYLNEDNISDISP-----LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-VTP--IANLTDL  179 (347)
T ss_dssp             CTTCSEEECTTSCCCCCGG-----GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-CGG--GGGCTTC
T ss_pred             CCcCCEEECcCCcccCchh-----hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-chh--hccCCCC
Confidence            9999999999999987543     7889999999999996655344 48899999999999995432 222  6788888


Q ss_pred             CEEEccCCcCCCccc--------------------ccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCC
Q 035693          209 TTLDLSQCDLHGKFP--------------------EKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSG  268 (348)
Q Consensus       209 ~~L~l~~~~~~~~~~--------------------~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~  268 (348)
                      ++|++++|.+.+..+                    ..+..+++|++|++++|.+....  .+..+++|++|++++|.+++
T Consensus       180 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~  257 (347)
T 4fmz_A          180 YSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQISD  257 (347)
T ss_dssp             SEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             CEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCc--chhcCCCCCEEECCCCccCC
Confidence            888888887763221                    01344556666666666543322  25556777777777777763


Q ss_pred             CCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCC
Q 035693          269 KLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGIS  344 (348)
Q Consensus       269 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip  344 (348)
                       + ..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|++.+..+..+ ..+++|++|++++|++++..|
T Consensus       258 -~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          258 -I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVI-GGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             -C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHH-HTCTTCSEEECCSSSCCCCGG
T ss_pred             -C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHh-hccccCCEEEccCCccccccC
Confidence             3 3466777888888888877763  346677888888888888876444433 344788888888888876554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=1e-27  Score=238.63  Aligned_cols=285  Identities=23%  Similarity=0.192  Sum_probs=172.9

Q ss_pred             ccceEeCCCCCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCC-C---CCCCCCcEEecCCCCCCCCcc
Q 035693           40 WNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPM-P---SSLPRLVTLDLSSREPISGFS  115 (348)
Q Consensus        40 ~~~~~c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~---~~~~~L~~L~l~~~~~~~~~~  115 (348)
                      |.++.+ -.+++++|+|++| .+.+..|.  .+.++++|+.|++++|..... + +   ..+++|++|++++|.+.    
T Consensus        16 L~~vP~-lp~~l~~LdLs~N-~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~----   86 (844)
T 3j0a_A           16 LTQVPQ-VLNTTERLLLSFN-YIRTVTAS--SFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIY----   86 (844)
T ss_dssp             SSCCCS-SCTTCCEEEEESC-CCCEECSS--SCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCC----
T ss_pred             CCCCCC-CCCCcCEEECCCC-cCCccChh--HCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCc----
Confidence            444443 2256667777776 55544444  566666666666666643322 2 1   25666666666666552    


Q ss_pred             eeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcch-HHhhhccCCCEEEcccCCCC
Q 035693          116 WRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPIN-HHLANLLSLSVIRLRDNHAV  194 (348)
Q Consensus       116 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~  194 (348)
                        ...|..  +.++++|++|++++|.+.+..+. ...+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.. 
T Consensus        87 --~~~p~~--~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i-  160 (844)
T 3j0a_A           87 --FLHPDA--FQGLFHLFELRLYFCGLSDAVLK-DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI-  160 (844)
T ss_dssp             --EECTTS--SCSCSSCCCEECTTCCCSSCCST-TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC-
T ss_pred             --ccCHhH--ccCCcccCEeeCcCCCCCccccc-CccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC-
Confidence              122333  55666666666666665542221 0124556666666666666555322 3455666666666666532 


Q ss_pred             CCChhhhhh--------------------------cCC------CCCEEEccCCcCCCccccccc---------------
Q 035693          195 SCQVPEFVA--------------------------NLL------NLTTLDLSQCDLHGKFPEKVL---------------  227 (348)
Q Consensus       195 ~~~~~~~l~--------------------------~l~------~L~~L~l~~~~~~~~~~~~l~---------------  227 (348)
                      ....+..+.                          .++      .|++|++++|.+.+..+..+.               
T Consensus       161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~  240 (844)
T 3j0a_A          161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH  240 (844)
T ss_dssp             CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred             CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence            222222222                          222      266777776654432222111               


Q ss_pred             ---------------------C--CCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEe
Q 035693          228 ---------------------Q--VPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVD  284 (348)
Q Consensus       228 ---------------------~--~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~  284 (348)
                                           .  .++|+.|++++|.+.......+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus       241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  320 (844)
T 3j0a_A          241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN  320 (844)
T ss_dssp             SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred             ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence                                 1  24677777777776555556667778888888888888766677778888888888


Q ss_pred             ecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccc
Q 035693          285 VSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT  340 (348)
Q Consensus       285 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  340 (348)
                      +++|.+.+..+..+..+++|+.|++++|++.+ ++...+..+++|++|++++|.++
T Consensus       321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI-IQDQTFKFLEKLQTLDLRDNALT  375 (844)
T ss_dssp             EESCCCSCCCSCSCSSCTTCCEEECCSCCCCC-CCSSCSCSCCCCCEEEEETCCSC
T ss_pred             CCCCCCCccCHHHhcCCCCCCEEECCCCCCCc-cChhhhcCCCCCCEEECCCCCCC
Confidence            88888888777788888888888888888866 44333445578888888888886

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=1.4e-27  Score=227.49  Aligned_cols=275  Identities=18%  Similarity=0.165  Sum_probs=168.0

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF  125 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  125 (348)
                      +++++|++++| .+.+..+.  .+.++++|++|++++|.+++. .+.   .+++|++|++++|.++       .+|..  
T Consensus        52 ~~L~~L~Ls~N-~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-------~lp~~--  118 (562)
T 3a79_B           52 PRTKALSLSQN-SISELRMP--DISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ-------NISCC--  118 (562)
T ss_dssp             TTCCEEECCSS-CCCCCCGG--GTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC-------EECSC--
T ss_pred             CCcCEEECCCC-CccccChh--hhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC-------ccCcc--
Confidence            57888888888 77655444  778888888888888888775 333   6788888888888764       23332  


Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCC--CEEEcccCCCC-CCChhhhh
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSL--SVIRLRDNHAV-SCQVPEFV  202 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~~-~~~~~~~l  202 (348)
                        .+++|++|++++|++.....  +..+.++++|++|++++|.+...   .+..+++|  ++|++++|... ....+..+
T Consensus       119 --~l~~L~~L~Ls~N~l~~l~~--p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l  191 (562)
T 3a79_B          119 --PMASLRHLDLSFNDFDVLPV--CKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESL  191 (562)
T ss_dssp             --CCTTCSEEECCSSCCSBCCC--CGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred             --ccccCCEEECCCCCccccCc--hHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccc
Confidence              67788888888888776431  13567778888888888877653   33344444  77777776430 11111111


Q ss_pred             hc------------------------------------------------------------------------------
Q 035693          203 AN------------------------------------------------------------------------------  204 (348)
Q Consensus       203 ~~------------------------------------------------------------------------------  204 (348)
                      ..                                                                              
T Consensus       192 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~  271 (562)
T 3a79_B          192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ  271 (562)
T ss_dssp             EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH
T ss_pred             cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH
Confidence            11                                                                              


Q ss_pred             ---CCCCCEEEccCCcCCCcccccc-----------------------------------------------------cC
Q 035693          205 ---LLNLTTLDLSQCDLHGKFPEKV-----------------------------------------------------LQ  228 (348)
Q Consensus       205 ---l~~L~~L~l~~~~~~~~~~~~l-----------------------------------------------------~~  228 (348)
                         .++|++|++++|.+.+.+|..+                                                     ..
T Consensus       272 ~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  351 (562)
T 3a79_B          272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS  351 (562)
T ss_dssp             HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred             hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccC
Confidence               1255666666666554444433                                                     34


Q ss_pred             CCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCC--CCccccCCCCCCEEeecCCccCCCCc-ccccCCCCCC
Q 035693          229 VPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGK--LPDSIGNLENLASVDVSSCNFTRPIP-TSMANLTQLF  305 (348)
Q Consensus       229 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~--~~~~l~~~~~L~~L~L~~n~l~~~~~-~~l~~~~~L~  305 (348)
                      +++|++|++++|.+....+..+..+++|++|++++|++++.  +|..+..+++|++|++++|.+.+.+| ..+..+++|+
T Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~  431 (562)
T 3a79_B          352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL  431 (562)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred             CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence            45666666666665544445555566666666666666531  12345556666666666666665333 2355566666


Q ss_pred             EEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCCC
Q 035693          306 HLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNI  347 (348)
Q Consensus       306 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~~  347 (348)
                      +|++++|++.+.++..+.   ++|++|++++|.++ .||.++
T Consensus       432 ~L~l~~n~l~~~~~~~l~---~~L~~L~L~~N~l~-~ip~~~  469 (562)
T 3a79_B          432 VLNLSSNMLTGSVFRCLP---PKVKVLDLHNNRIM-SIPKDV  469 (562)
T ss_dssp             EEECCSSCCCGGGGSSCC---TTCSEEECCSSCCC-CCCTTT
T ss_pred             EEECCCCCCCcchhhhhc---CcCCEEECCCCcCc-ccChhh
Confidence            666666666554433221   46777777777776 666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=1.4e-27  Score=217.45  Aligned_cols=267  Identities=24%  Similarity=0.256  Sum_probs=206.9

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF  125 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  125 (348)
                      ++|++|+++++ .+.+..+.  .+..+++|++|++++|.+++. .+.   .+++|++|++++|.+.       .++. ..
T Consensus        69 ~~L~~L~L~~n-~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-------~l~~-~~  136 (390)
T 3o6n_A           69 RQVELLNLNDL-QIEEIDTY--AFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS-------SLPR-GI  136 (390)
T ss_dssp             CCCSEEECTTS-CCCEECTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-------CCCT-TT
T ss_pred             ccCcEEECCCC-cccccChh--hccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccC-------cCCH-HH
Confidence            68999999999 77655444  788999999999999999886 333   7899999999999864       2332 22


Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhh----
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEF----  201 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----  201 (348)
                      +.++++|++|++++|++....+   ..+..+++|++|++++|.+++..   +..+++|+.|++++|.......+..    
T Consensus       137 ~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L  210 (390)
T 3o6n_A          137 FHNTPKLTTLSMSNNNLERIED---DTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEEL  210 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCT---TTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEE
T ss_pred             hcCCCCCcEEECCCCccCccCh---hhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEE
Confidence            5789999999999999987665   46788999999999999988742   3445555555555542211000000    


Q ss_pred             -----------hhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCC
Q 035693          202 -----------VANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKL  270 (348)
Q Consensus       202 -----------l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~  270 (348)
                                 ....++|++|++++|.+.+.  ..+..+++|++|++++|.+....+..+..+++|++|++++|.++ .+
T Consensus       211 ~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~  287 (390)
T 3o6n_A          211 DASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-AL  287 (390)
T ss_dssp             ECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EE
T ss_pred             ECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-cc
Confidence                       11245799999999998743  56788999999999999887666677888999999999999998 45


Q ss_pred             CccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccc
Q 035693          271 PDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG  341 (348)
Q Consensus       271 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g  341 (348)
                      +..+..+++|++|++++|++.. +|..+..+++|+.|++++|++.+ ++   ...+++|++|++++|++++
T Consensus       288 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~-~~---~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          288 NLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVT-LK---LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             ECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCC-CC---CCTTCCCSEEECCSSCEEH
T ss_pred             CcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccce-eC---chhhccCCEEEcCCCCccc
Confidence            6666778999999999999987 67777888999999999999976 44   2344889999999998864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=1.3e-27  Score=237.84  Aligned_cols=278  Identities=20%  Similarity=0.228  Sum_probs=212.6

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF  125 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  125 (348)
                      .+|++|+|++| ...+.++. ..+.++++|++|++++|.+.+. .|.   .+++|++|++++|.+..      .++....
T Consensus        48 ~~L~~LdLs~n-~~~~~i~~-~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~  118 (844)
T 3j0a_A           48 EQLQLLELGSQ-YTPLTIDK-EAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSD------AVLKDGY  118 (844)
T ss_dssp             CSCSEEEECTT-CCCCEECT-TTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSS------CCSTTCC
T ss_pred             ccCeEEeCCCC-CCccccCH-HHhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCc------ccccCcc
Confidence            67888999888 55555532 2788888999999998888775 343   78889999998887642      2333334


Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhc--cC---------------------
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANL--LS---------------------  182 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~---------------------  182 (348)
                      +.++++|++|++++|.+....+.  ..+.++++|++|++++|.+.+..+..+..+  ++                     
T Consensus       119 ~~~L~~L~~L~Ls~N~l~~~~~~--~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~  196 (844)
T 3j0a_A          119 FRNLKALTRLDLSKNQIRSLYLH--PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK  196 (844)
T ss_dssp             CSSCSSCCEEEEESCCCCCCCCC--GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS
T ss_pred             ccccCCCCEEECCCCcccccccc--hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhh
Confidence            67888888888888888765431  357788888888888888776555544433  33                     


Q ss_pred             ---------CCEEEcccCCCCCCChhhh------------------------------------hhc--CCCCCEEEccC
Q 035693          183 ---------LSVIRLRDNHAVSCQVPEF------------------------------------VAN--LLNLTTLDLSQ  215 (348)
Q Consensus       183 ---------L~~L~l~~~~~~~~~~~~~------------------------------------l~~--l~~L~~L~l~~  215 (348)
                               |+.|++++|.. ....+..                                    +..  .++|++|++++
T Consensus       197 ~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~  275 (844)
T 3j0a_A          197 CMNPFRNMVLEILDVSGNGW-TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH  275 (844)
T ss_dssp             SSCTTTTCCBSEEBCSSCCS-STTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTT
T ss_pred             cCCccccCceeEEecCCCcC-chhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCC
Confidence                     56666666522 1111111                                    111  26799999999


Q ss_pred             CcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCc
Q 035693          216 CDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIP  295 (348)
Q Consensus       216 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~  295 (348)
                      |.+.+..+..+..+++|+.|++++|.+.......|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+
T Consensus       276 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~  355 (844)
T 3j0a_A          276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD  355 (844)
T ss_dssp             CCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred             CcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh
Confidence            99987777888999999999999999877777788889999999999999987778899999999999999999998777


Q ss_pred             ccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCC
Q 035693          296 TSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISS  345 (348)
Q Consensus       296 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~  345 (348)
                      ..+..+++|+.|++++|.+.+ ++.     +++|+.|++++|.++ .+|.
T Consensus       356 ~~~~~l~~L~~L~Ls~N~l~~-i~~-----~~~L~~L~l~~N~l~-~l~~  398 (844)
T 3j0a_A          356 QTFKFLEKLQTLDLRDNALTT-IHF-----IPSIPDIFLSGNKLV-TLPK  398 (844)
T ss_dssp             SCSCSCCCCCEEEEETCCSCC-CSS-----CCSCSEEEEESCCCC-CCCC
T ss_pred             hhhcCCCCCCEEECCCCCCCc-ccC-----CCCcchhccCCCCcc-cccc
Confidence            788999999999999999976 443     377888888888886 5654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.5e-27  Score=225.28  Aligned_cols=275  Identities=20%  Similarity=0.202  Sum_probs=184.8

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF  125 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  125 (348)
                      +++++|++++| .+.+..|.  .+.++++|++|++++|.+++. .+.   .+++|++|++++|.++       .+|..  
T Consensus        21 ~~L~~L~Ls~n-~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-------~lp~~--   87 (520)
T 2z7x_B           21 QKTTILNISQN-YISELWTS--DILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLV-------KISCH--   87 (520)
T ss_dssp             TTCSEEECCSS-CCCCCCHH--HHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCC-------EEECC--
T ss_pred             ccccEEECCCC-cccccChh--hccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCcee-------ecCcc--
Confidence            68999999999 77765554  788999999999999999886 333   8999999999999874       23332  


Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCC--CEEEcccCCCC-CCChhhhh
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSL--SVIRLRDNHAV-SCQVPEFV  202 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~~-~~~~~~~l  202 (348)
                        .+++|++|++++|.+.....  +..+..+++|++|++++|.+.+   ..+..+++|  ++|++++|... ....+..+
T Consensus        88 --~l~~L~~L~L~~N~l~~~~~--p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l  160 (520)
T 2z7x_B           88 --PTVNLKHLDLSFNAFDALPI--CKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGL  160 (520)
T ss_dssp             --CCCCCSEEECCSSCCSSCCC--CGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTT
T ss_pred             --ccCCccEEeccCCccccccc--hhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccc
Confidence              68999999999999986421  1468889999999999999876   356677788  99999998541 11122222


Q ss_pred             hc------------------------------------------------------------------------------
Q 035693          203 AN------------------------------------------------------------------------------  204 (348)
Q Consensus       203 ~~------------------------------------------------------------------------------  204 (348)
                      ..                                                                              
T Consensus       161 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~  240 (520)
T 2z7x_B          161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI  240 (520)
T ss_dssp             TTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHH
T ss_pred             cccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHH
Confidence            11                                                                              


Q ss_pred             -----CCCCCEEEccCCcCCCcccccc-----cCCCCccEEEccCCCC--------------------------CCCCCC
Q 035693          205 -----LLNLTTLDLSQCDLHGKFPEKV-----LQVPTLETLDLSYNSL--------------------------LQGSLP  248 (348)
Q Consensus       205 -----l~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~l--------------------------~~~~~~  248 (348)
                           .++|++|++++|.+.+.+|..+     ..++.|+.+++++|.+                          ...  .
T Consensus       241 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~--~  318 (520)
T 2z7x_B          241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM--L  318 (520)
T ss_dssp             HHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCC--C
T ss_pred             HHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccc--c
Confidence                 1267777777777666666655     4444444444443332                          111  1


Q ss_pred             CCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCC--CCcccccCCCCCCEEeCCCCccCCccCchhhhhh
Q 035693          249 HFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR--PIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMS  326 (348)
Q Consensus       249 ~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~  326 (348)
                      .+..+++|++|++++|.+++..|..++.+++|++|++++|.+.+  .+|..+..+++|+.|++++|++.+.+|...+..+
T Consensus       319 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l  398 (520)
T 2z7x_B          319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT  398 (520)
T ss_dssp             CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred             chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence            11345667777777777766566666667777777777777765  3445566667777777777777665554433334


Q ss_pred             cCCCeeecccCcccccCCC
Q 035693          327 RNLNYLNLSSNDLTGGISS  345 (348)
Q Consensus       327 ~~L~~L~l~~n~l~g~ip~  345 (348)
                      ++|++|++++|.+++.+|.
T Consensus       399 ~~L~~L~Ls~N~l~~~~~~  417 (520)
T 2z7x_B          399 KSLLSLNMSSNILTDTIFR  417 (520)
T ss_dssp             TTCCEEECCSSCCCGGGGG
T ss_pred             ccCCEEECcCCCCCcchhh
Confidence            5566666666666555543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.9e-28  Score=218.93  Aligned_cols=288  Identities=19%  Similarity=0.198  Sum_probs=148.1

Q ss_pred             CCCCCCCCCCccccceEeCCCCCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCC--CCCCCCCcEEec
Q 035693           28 MSQWSESTDCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPM--PSSLPRLVTLDL  105 (348)
Q Consensus        28 ~~~w~~~~~~~~~~~~~c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l  105 (348)
                      ...|......|.|.++ |+         .+++ .+. .+|.  .+  .++|+.|++++|.+++...  ...+++|++|++
T Consensus        20 ~~~~~~~~~~C~~~~~-c~---------~~~~-~l~-~iP~--~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L   83 (353)
T 2z80_A           20 EESSNQASLSCDRNGI-CK---------GSSG-SLN-SIPS--GL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVL   83 (353)
T ss_dssp             -------CCEECTTSE-EE---------CCST-TCS-SCCT--TC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccCCCccCCCCCCCeE-ee---------CCCC-Ccc-cccc--cc--cccCcEEECCCCcCcccCHHHhccCCCCCEEEC
Confidence            3456666777888776 43         2222 222 3332  22  1356666666666555411  115566666666


Q ss_pred             CCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcch-HHhhhccCCC
Q 035693          106 SSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPIN-HHLANLLSLS  184 (348)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~  184 (348)
                      ++|.++      ...+..  +.++++|++|++++|+++....   ..+..+++|++|++++|.+..... ..+..+++|+
T Consensus        84 ~~n~l~------~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~  152 (353)
T 2z80_A           84 TSNGIN------TIEEDS--FSSLGSLEHLDLSYNYLSNLSS---SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ  152 (353)
T ss_dssp             TTSCCC------EECTTT--TTTCTTCCEEECCSSCCSSCCH---HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             CCCccC------ccCHhh--cCCCCCCCEEECCCCcCCcCCH---hHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence            666542      112222  5556666666666666655443   235556666666666666654222 2455566666


Q ss_pred             EEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccC
Q 035693          185 VIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNT  264 (348)
Q Consensus       185 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n  264 (348)
                      +|++++|.......+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|++|++++|
T Consensus       153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  232 (353)
T 2z80_A          153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT  232 (353)
T ss_dssp             EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred             EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence            66666653333333445556666666666666665555555666666666666666542211111222456666666666


Q ss_pred             CCCCCCCccc---cCCCCCCEEeecCCccCC----CCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccC
Q 035693          265 SFSGKLPDSI---GNLENLASVDVSSCNFTR----PIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSN  337 (348)
Q Consensus       265 ~~~~~~~~~l---~~~~~L~~L~L~~n~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n  337 (348)
                      .+++..+..+   .....++.++++++.+.+    .+|..+..+++|+.|++++|++.. +|...+..+++|++|++++|
T Consensus       233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred             ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCC
Confidence            6654322222   123455566666655554    244455556666666666666653 55544444456666666666


Q ss_pred             cccccC
Q 035693          338 DLTGGI  343 (348)
Q Consensus       338 ~l~g~i  343 (348)
                      ++++..
T Consensus       312 ~~~~~~  317 (353)
T 2z80_A          312 PWDCSC  317 (353)
T ss_dssp             CBCCCH
T ss_pred             CccCcC
Confidence            665543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=9.7e-28  Score=236.29  Aligned_cols=275  Identities=20%  Similarity=0.248  Sum_probs=196.4

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCC-CCC-CCCCC----------CCCCCcEEecCCCCCCCCcce
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTL-FYG-FPMPS----------SLPRLVTLDLSSREPISGFSW  116 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~----------~~~~L~~L~l~~~~~~~~~~~  116 (348)
                      .+|++|+|++| .+.+.+|.  .+.++++|+.|++++|. +++ . +|.          .+++|++|++++|.+.     
T Consensus       491 ~~L~~L~Ls~N-~l~~~iP~--~l~~L~~L~~L~Ls~N~~lsg~~-iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-----  561 (876)
T 4ecn_A          491 KDLTDVELYNC-PNMTQLPD--FLYDLPELQSLNIACNRGISAAQ-LKADWTRLADDEDTGPKIQIFYMGYNNLE-----  561 (876)
T ss_dssp             TTCCEEEEESC-TTCCSCCG--GGGGCSSCCEEECTTCTTSCHHH-HHHHHHHHHHCTTTTTTCCEEECCSSCCC-----
T ss_pred             CCCCEEECcCC-CCCccChH--HHhCCCCCCEEECcCCCCccccc-chHHHHhhhhcccccCCccEEEeeCCcCC-----
Confidence            67889999988 77778886  78889999999999887 765 2 332          4568888888888763     


Q ss_pred             eecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccC-CCEEEcccCCCCC
Q 035693          117 RLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLS-LSVIRLRDNHAVS  195 (348)
Q Consensus       117 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~  195 (348)
                        .+|....+.++++|+.|++++|++...+     .+..+++|++|++++|.+. .+|..+..+++ |+.|++++|... 
T Consensus       562 --~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-----~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-  632 (876)
T 4ecn_A          562 --EFPASASLQKMVKLGLLDCVHNKVRHLE-----AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-  632 (876)
T ss_dssp             --BCCCHHHHTTCTTCCEEECTTSCCCBCC-----CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-
T ss_pred             --ccCChhhhhcCCCCCEEECCCCCcccch-----hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-
Confidence              5665123778888888888888876322     4677777888888888777 46666777777 777777777432 


Q ss_pred             CChhhhhhcC-------------------------------CCCCEEEccCCcCCCcccccc-cCCCCccEEEccCCCCC
Q 035693          196 CQVPEFVANL-------------------------------LNLTTLDLSQCDLHGKFPEKV-LQVPTLETLDLSYNSLL  243 (348)
Q Consensus       196 ~~~~~~l~~l-------------------------------~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~  243 (348)
                       .++..+...                               ++|+.|++++|.+. .+|..+ ..+++|+.|++++|.+.
T Consensus       633 -~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~  710 (876)
T 4ecn_A          633 -YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT  710 (876)
T ss_dssp             -SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred             -cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence             233333222                               24555555555555 344433 35677888888888765


Q ss_pred             CCCCCCCCC-------CCCCcEEEcccCCCCCCCCcccc--CCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCC---
Q 035693          244 QGSLPHFPK-------NSSLRNLNLKNTSFSGKLPDSIG--NLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSS---  311 (348)
Q Consensus       244 ~~~~~~~~~-------~~~L~~L~ls~n~~~~~~~~~l~--~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~---  311 (348)
                      ......+..       +++|+.|++++|.++ .+|..+.  .+++|+.|+|++|.+.+ +|..+..+++|+.|+|++   
T Consensus       711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~  788 (876)
T 4ecn_A          711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD  788 (876)
T ss_dssp             CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBC
T ss_pred             ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCC
Confidence            322222222       227889999999888 6777776  78899999999999988 787788889999999876   


Q ss_pred             ---CccCCccCchhhhhhcCCCeeecccCcccccCCCCC
Q 035693          312 ---NHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNI  347 (348)
Q Consensus       312 ---n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~~  347 (348)
                         |.+.+.+|..+.. +++|++|+|++|++ +.||..+
T Consensus       789 ls~N~l~~~ip~~l~~-L~~L~~L~Ls~N~L-~~Ip~~l  825 (876)
T 4ecn_A          789 AEGNRILRQWPTGITT-CPSLIQLQIGSNDI-RKVDEKL  825 (876)
T ss_dssp             TTCCBCCCCCCTTGGG-CSSCCEEECCSSCC-CBCCSCC
T ss_pred             cccccccccChHHHhc-CCCCCEEECCCCCC-CccCHhh
Confidence               6777777766554 48899999999999 7888865

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=1.2e-26  Score=206.38  Aligned_cols=266  Identities=19%  Similarity=0.201  Sum_probs=217.3

Q ss_pred             CEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCC--CCCCCCCcEEecCCCCCCCCcceeecCCChhhhc
Q 035693           50 HVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPM--PSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQ  127 (348)
Q Consensus        50 ~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  127 (348)
                      +++.++++++ .+. .+|.  .+  .++|+.|++++|.+++...  ...+++|++|++++|.+..      ..+..  +.
T Consensus        32 ~l~~l~~~~~-~l~-~lp~--~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~--~~   97 (330)
T 1xku_A           32 HLRVVQCSDL-GLE-KVPK--DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK------ISPGA--FA   97 (330)
T ss_dssp             ETTEEECTTS-CCC-SCCC--SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC------BCTTT--TT
T ss_pred             CCeEEEecCC-Ccc-ccCc--cC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe------eCHHH--hc
Confidence            4688999988 654 4554  33  3789999999999988622  1289999999999998742      33444  88


Q ss_pred             CCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCC-CChhhhhhcCC
Q 035693          128 NLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVS-CQVPEFVANLL  206 (348)
Q Consensus       128 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~l~  206 (348)
                      ++++|++|++++|+++..+..    +  .++|++|++++|.+....+..+..+++|++|++++|.... +..+..+..++
T Consensus        98 ~l~~L~~L~Ls~n~l~~l~~~----~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  171 (330)
T 1xku_A           98 PLVKLERLYLSKNQLKELPEK----M--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK  171 (330)
T ss_dssp             TCTTCCEEECCSSCCSBCCSS----C--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred             CCCCCCEEECCCCcCCccChh----h--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence            999999999999999865532    2  2799999999999999888889999999999999995432 24566788999


Q ss_pred             CCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeec
Q 035693          207 NLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVS  286 (348)
Q Consensus       207 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~  286 (348)
                      +|++|++++|.+. .+|..+.  ++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus       172 ~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  248 (330)
T 1xku_A          172 KLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN  248 (330)
T ss_dssp             TCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred             CcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECC
Confidence            9999999999987 4565543  799999999999877667778889999999999999986666688899999999999


Q ss_pred             CCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhh------hhcCCCeeecccCccc
Q 035693          287 SCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLY------MSRNLNYLNLSSNDLT  340 (348)
Q Consensus       287 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~------~~~~L~~L~l~~n~l~  340 (348)
                      +|.+.. +|..+..+++|++|++++|++++ ++...+.      ..+.++.|++++|++.
T Consensus       249 ~N~l~~-lp~~l~~l~~L~~L~l~~N~i~~-~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          249 NNKLVK-VPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             SSCCSS-CCTTTTTCSSCCEEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCcCcc-CChhhccCCCcCEEECCCCcCCc-cChhhcCCcccccccccccceEeecCccc
Confidence            999996 78888999999999999999987 4433221      1267899999999885

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=8.2e-27  Score=222.58  Aligned_cols=120  Identities=24%  Similarity=0.268  Sum_probs=90.5

Q ss_pred             ccCCCCccEEEccCCCCCCCCC-CCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccC-CCCcccccCCCC
Q 035693          226 VLQVPTLETLDLSYNSLLQGSL-PHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFT-RPIPTSMANLTQ  303 (348)
Q Consensus       226 l~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~-~~~~~~l~~~~~  303 (348)
                      +..+++|+.|++++|.+..... ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++
T Consensus       392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~  471 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  471 (570)
T ss_dssp             EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence            4455566666666665443322 34566788899999998888777778888899999999999987 457788888999


Q ss_pred             CCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCC
Q 035693          304 LFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSN  346 (348)
Q Consensus       304 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~  346 (348)
                      |+.|++++|++.+..|..+. .+++|++|++++|.+++..|..
T Consensus       472 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~  513 (570)
T 2z63_A          472 LTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMASNQLKSVPDGI  513 (570)
T ss_dssp             CCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTT
T ss_pred             CCEEECCCCccccCChhhhh-cccCCCEEeCCCCcCCCCCHHH
Confidence            99999999999875565544 4588999999999998665543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=1.5e-26  Score=225.24  Aligned_cols=290  Identities=22%  Similarity=0.147  Sum_probs=187.3

Q ss_pred             CCEEEEeCCCCccccc-----cccC--CcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCc----
Q 035693           49 GHVIGLDLSAEPILIG-----SLEN--ASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGF----  114 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~-----~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~----  114 (348)
                      .++++|+++++ ...+     .+|.  ...+..+++|+.|++++|.+++. .+.   .+++|++|++++|.+....    
T Consensus       296 ~~L~~L~L~~~-~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~  373 (680)
T 1ziw_A          296 FNVRYLNLKRS-FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI-KSNMFTGLINLKYLSLSNSFTSLRTLTNE  373 (680)
T ss_dssp             TTCCEEECTTC-BCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC-CTTTTTTCTTCCEEECTTCBSCCCEECTT
T ss_pred             CCccEEeccch-hhhcccccccccccChhhcccCCCCCEEECCCCccCCC-ChhHhccccCCcEEECCCCchhhhhcchh
Confidence            56777777765 3222     1121  01355667777777777766664 222   5666666666665421100    


Q ss_pred             ------------------ceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHH
Q 035693          115 ------------------SWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHH  176 (348)
Q Consensus       115 ------------------~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  176 (348)
                                        ......+.  .+..+++|+.|++++|.+.+..+.  ..+..+++|++|++++|.+.+..+..
T Consensus       374 ~f~~~~~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~  449 (680)
T 1ziw_A          374 TFVSLAHSPLHILNLTKNKISKIESD--AFSWLGHLEVLDLGLNEIGQELTG--QEWRGLENIFEIYLSYNKYLQLTRNS  449 (680)
T ss_dssp             TTGGGTTSCCCEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCEEECCS--GGGTTCTTCCEEECCSCSEEECCTTT
T ss_pred             hhcccccCcCceEECCCCCCCeEChh--hhhCCCCCCEEeCCCCcCccccCc--ccccCcccccEEecCCCCcceeChhh
Confidence                              00111222  256667777777777766542221  34566777777777777766656666


Q ss_pred             hhhccCCCEEEcccCCCCC-CChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCC--------C
Q 035693          177 LANLLSLSVIRLRDNHAVS-CQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGS--------L  247 (348)
Q Consensus       177 ~~~~~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~--------~  247 (348)
                      +..+++|+.|++++|.... ...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....        .
T Consensus       450 ~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  529 (680)
T 1ziw_A          450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI  529 (680)
T ss_dssp             TTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCC
T ss_pred             hhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcc
Confidence            6777777777777764321 345666778888888888888887655566778888888888888765421        1


Q ss_pred             CCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhc
Q 035693          248 PHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSR  327 (348)
Q Consensus       248 ~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  327 (348)
                      ..+..+++|++|++++|++....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|++++..+..+...++
T Consensus       530 ~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  609 (680)
T 1ziw_A          530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR  609 (680)
T ss_dssp             CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHT
T ss_pred             hhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccc
Confidence            23566788888888888887433346778888888888888888766666677888888888888887743333332457


Q ss_pred             CCCeeecccCcccccCC
Q 035693          328 NLNYLNLSSNDLTGGIS  344 (348)
Q Consensus       328 ~L~~L~l~~n~l~g~ip  344 (348)
                      +|++|++++|++...-+
T Consensus       610 ~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          610 NLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             TCSEEECTTCCCCBCCC
T ss_pred             ccCEEEccCCCcccCCc
Confidence            88888888888775543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2.3e-27  Score=208.87  Aligned_cols=260  Identities=19%  Similarity=0.160  Sum_probs=202.3

Q ss_pred             cccCEEeCCCCCCCCCCC--CCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhh
Q 035693           76 QYLQSLNLGFTLFYGFPM--PSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAM  153 (348)
Q Consensus        76 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  153 (348)
                      ++|+.|++++|.++....  ...+++|++|++++|.+...    ...+..  +..+++|++|++++|.+....    ..+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~--~~~~~~L~~L~Ls~n~i~~l~----~~~   97 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK----GCCSQS--DFGTTSLKYLDLSFNGVITMS----SNF   97 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE----EEEEHH--HHSCSCCCEEECCSCSEEEEE----EEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc----cCcccc--cccccccCEEECCCCccccCh----hhc
Confidence            578899999888876421  12788999999998876421    111222  567889999999999887544    347


Q ss_pred             CCCCCCcEEEccCccCCCcch-HHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCC-cccccccCCCC
Q 035693          154 SFLPNLQVLNLSNCLLSDPIN-HHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHG-KFPEKVLQVPT  231 (348)
Q Consensus       154 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~  231 (348)
                      ..+++|++|++++|.+.+..+ ..+..+++|++|++++|. .....+..+..+++|++|++++|.+.+ ..|..+..+++
T Consensus        98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  176 (306)
T 2z66_A           98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  176 (306)
T ss_dssp             ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence            788999999999998877543 577888999999999984 444566678888999999999998875 57778889999


Q ss_pred             ccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCC-CCCEEeCC
Q 035693          232 LETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLT-QLFHLDFS  310 (348)
Q Consensus       232 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~-~L~~L~l~  310 (348)
                      |++|++++|.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++ +|+.|+++
T Consensus       177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~  256 (306)
T 2z66_A          177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT  256 (306)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred             CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence            99999999988776677788899999999999999866666788889999999999999998888888875 99999999


Q ss_pred             CCccCCccCc-hhhhhhcCCCeeecccCcccccCCCC
Q 035693          311 SNHFSDPIPT-LRLYMSRNLNYLNLSSNDLTGGISSN  346 (348)
Q Consensus       311 ~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~g~ip~~  346 (348)
                      +|++.+.... .+.......+.+.+..+.+....|+.
T Consensus       257 ~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~  293 (306)
T 2z66_A          257 QNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD  293 (306)
T ss_dssp             TCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred             CCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence            9999875332 23334455666666667776665553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=7.7e-27  Score=207.90  Aligned_cols=265  Identities=18%  Similarity=0.190  Sum_probs=215.2

Q ss_pred             CEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCC---CCCCCCcEEecCCCCCCCCcceeecCCChhhh
Q 035693           50 HVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMP---SSLPRLVTLDLSSREPISGFSWRLEIPNFNFF  126 (348)
Q Consensus        50 ~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  126 (348)
                      +++.++++++ .+. .+|.  .+  .++|+.|++++|.+++. .+   ..+++|++|++++|.++      ...+..  +
T Consensus        34 ~l~~l~~~~~-~l~-~ip~--~~--~~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~------~~~~~~--~   98 (332)
T 2ft3_A           34 HLRVVQCSDL-GLK-AVPK--EI--SPDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKIS------KIHEKA--F   98 (332)
T ss_dssp             ETTEEECCSS-CCS-SCCS--CC--CTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCC------EECGGG--S
T ss_pred             cCCEEECCCC-Ccc-ccCC--CC--CCCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccC------ccCHhH--h
Confidence            4788999998 664 5664  33  47999999999999876 23   28999999999999874      223433  8


Q ss_pred             cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCC-CChhhhhhcC
Q 035693          127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVS-CQVPEFVANL  205 (348)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~l  205 (348)
                      .++++|++|++++|++...+..    +.  ++|++|++++|.+....+..+..+++|++|++++|.... ...+..+..+
T Consensus        99 ~~l~~L~~L~L~~n~l~~l~~~----~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  172 (332)
T 2ft3_A           99 SPLRKLQKLYISKNHLVEIPPN----LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL  172 (332)
T ss_dssp             TTCTTCCEEECCSSCCCSCCSS----CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred             hCcCCCCEEECCCCcCCccCcc----cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence            8999999999999999866542    22  799999999999998767778999999999999995432 2345566666


Q ss_pred             CCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEee
Q 035693          206 LNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDV  285 (348)
Q Consensus       206 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L  285 (348)
                       +|++|++++|.+. .+|..+.  ++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus       173 -~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  248 (332)
T 2ft3_A          173 -KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL  248 (332)
T ss_dssp             -CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred             -ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEEC
Confidence             8999999999988 4565543  78999999999987777778888999999999999999777778899999999999


Q ss_pred             cCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhh-----hcCCCeeecccCccc
Q 035693          286 SSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYM-----SRNLNYLNLSSNDLT  340 (348)
Q Consensus       286 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~-----~~~L~~L~l~~n~l~  340 (348)
                      ++|.+.. +|..+..+++|+.|++++|++++..+..+...     .+.|+.|++++|+++
T Consensus       249 ~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          249 DNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             CCCcCee-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            9999996 78888999999999999999987333332221     267899999999886

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=2.2e-27  Score=225.60  Aligned_cols=129  Identities=26%  Similarity=0.195  Sum_probs=86.0

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF  125 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  125 (348)
                      +++++|++++| .+.+..|.  .+.++++|++|++++|.+++. .+.   .+++|++|++++|.+..      ..+  ..
T Consensus        26 ~~L~~L~Ls~n-~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~------~~~--~~   93 (549)
T 2z81_A           26 AAMKSLDLSFN-KITYIGHG--DLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSS------LSS--SW   93 (549)
T ss_dssp             TTCCEEECCSS-CCCEECSS--TTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCS------CCH--HH
T ss_pred             CCccEEECcCC-ccCccChh--hhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCc------cCH--HH
Confidence            47888888888 77655554  678888888888888888775 322   77888888888887642      112  22


Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcc-hHHhhhccCCCEEEcccC
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPI-NHHLANLLSLSVIRLRDN  191 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~  191 (348)
                      +.++++|++|++++|.+.....  ...+.++++|++|++++|.+.+.+ +..+..+++|++|++++|
T Consensus        94 ~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  158 (549)
T 2z81_A           94 FGPLSSLKYLNLMGNPYQTLGV--TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL  158 (549)
T ss_dssp             HTTCTTCCEEECTTCCCSSSCS--SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             hccCCCCcEEECCCCcccccch--hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence            6677777888887777764321  124566677777777777633323 345666666777777666

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=6.8e-27  Score=224.17  Aligned_cols=268  Identities=24%  Similarity=0.264  Sum_probs=212.1

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF  125 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  125 (348)
                      .+|++|+|++| .+.+..|.  .+..+++|+.|++++|.+++. .+.   .+++|++|++++|.++       .+|. ..
T Consensus        75 ~~L~~L~L~~n-~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-------~l~~-~~  142 (597)
T 3oja_B           75 RQVELLNLNDL-QIEEIDTY--AFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS-------SLPR-GI  142 (597)
T ss_dssp             CCCSEEECTTS-CCCEECTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-------CCCT-TT
T ss_pred             CCCcEEECCCC-CCCCCChH--HhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCC-------CCCH-HH
Confidence            58999999999 78766554  789999999999999999886 332   7999999999999874       2332 22


Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhh---
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFV---  202 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l---  202 (348)
                      +.++++|++|++++|.+....+   ..+..+++|++|++++|.+.+..   +..+++|+.|++++|.......+..+   
T Consensus       143 ~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L  216 (597)
T 3oja_B          143 FHNTPKLTTLSMSNNNLERIED---DTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEEL  216 (597)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCT---TTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEE
T ss_pred             hccCCCCCEEEeeCCcCCCCCh---hhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhhee
Confidence            6889999999999999988766   56788999999999999988743   34456666666665532111111000   


Q ss_pred             ------------hcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCC
Q 035693          203 ------------ANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKL  270 (348)
Q Consensus       203 ------------~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~  270 (348)
                                  ...++|+.|++++|.+.+  +..+..+++|+.|++++|.+....+..+..+++|++|++++|.++ .+
T Consensus       217 ~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l  293 (597)
T 3oja_B          217 DASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-AL  293 (597)
T ss_dssp             ECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EE
T ss_pred             eccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CC
Confidence                        123579999999999875  366888999999999999987766778888999999999999998 46


Q ss_pred             CccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccccc
Q 035693          271 PDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGG  342 (348)
Q Consensus       271 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~  342 (348)
                      |..+..+++|+.|++++|.+.. +|..+..+++|+.|++++|++.+ ++   ...+++|++|++++|++++.
T Consensus       294 ~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~-~~---~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          294 NLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVT-LK---LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             ECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCC-CC---CCTTCCCSEEECCSSCEEHH
T ss_pred             CcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCC-cC---hhhcCCCCEEEeeCCCCCCh
Confidence            6667778999999999999996 77778889999999999999976 44   23448999999999998753

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=7.7e-26  Score=210.65  Aligned_cols=245  Identities=24%  Similarity=0.280  Sum_probs=116.5

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcce------------
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSW------------  116 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------  116 (348)
                      .++++|++++| .+.+. +   .+.++++|+.|++++|.+.+......+++|++|++++|.+.....+            
T Consensus        68 ~~L~~L~Ls~n-~l~~~-~---~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~  142 (466)
T 1o6v_A           68 NNLTQINFSNN-QLTDI-T---PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS  142 (466)
T ss_dssp             TTCCEEECCSS-CCCCC-G---GGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEE
T ss_pred             cCCCEEECCCC-ccCCc-h---hhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECC
Confidence            56777777777 55432 2   2556666666666666655542222555555555555544321000            


Q ss_pred             -----e----------------ecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchH
Q 035693          117 -----R----------------LEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINH  175 (348)
Q Consensus       117 -----~----------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  175 (348)
                           .                ..+.....+.++++|++|++++|.+....     .+..+++|++|++++|.+.+..+ 
T Consensus       143 ~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n~l~~~~~-  216 (466)
T 1o6v_A          143 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-----VLAKLTNLESLIATNNQISDITP-  216 (466)
T ss_dssp             EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             CCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-----hhccCCCCCEEEecCCccccccc-
Confidence                 0                00000011344455555555555554332     24445555555555555554332 


Q ss_pred             HhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCC
Q 035693          176 HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSS  255 (348)
Q Consensus       176 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  255 (348)
                       +..+++|++|++++|....   ...+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+...  +.+..+++
T Consensus       217 -~~~l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~  288 (466)
T 1o6v_A          217 -LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI--SPLAGLTA  288 (466)
T ss_dssp             -GGGCTTCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC--GGGTTCTT
T ss_pred             -ccccCCCCEEECCCCCccc---chhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc--ccccCCCc
Confidence             4445555555555553221   1234455556666666655543222  44555555565555554322  12444455


Q ss_pred             CcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCC
Q 035693          256 LRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSD  316 (348)
Q Consensus       256 L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~  316 (348)
                      |++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|++.+
T Consensus       289 L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD  345 (466)
T ss_dssp             CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence            5555555555543211  3444555555555555544322  3344444444444444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=4.4e-27  Score=223.49  Aligned_cols=59  Identities=20%  Similarity=0.177  Sum_probs=42.7

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCC
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPI  111 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~  111 (348)
                      .++++|++++| .+.+..|.  .+.++++|++|++++|.+++. .+.   .+++|++|++++|.+.
T Consensus        50 ~~L~~L~Ls~n-~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~  111 (549)
T 2z81_A           50 ANLQVLILKSS-RINTIEGD--AFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQ  111 (549)
T ss_dssp             TTCCEEECTTS-CCCEECTT--TTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCS
T ss_pred             CcccEEECCCC-CcCccChh--hccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCccc
Confidence            67888888888 66655544  677888888888888877764 222   6778888888887764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=8.6e-27  Score=205.20  Aligned_cols=251  Identities=22%  Similarity=0.233  Sum_probs=202.4

Q ss_pred             EEeCCCCCCCCCCCCC-CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCC
Q 035693           80 SLNLGFTLFYGFPMPS-SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPN  158 (348)
Q Consensus        80 ~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  158 (348)
                      .++.+++.++.  +|. ..++|++|++++|.+.       .++. ..+.++++|++|++++|.+..... ....+..+++
T Consensus        11 ~l~c~~~~l~~--ip~~~~~~l~~L~L~~n~l~-------~i~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~   79 (306)
T 2z66_A           11 EIRCNSKGLTS--VPTGIPSSATRLELESNKLQ-------SLPH-GVFDKLTQLTKLSLSSNGLSFKGC-CSQSDFGTTS   79 (306)
T ss_dssp             EEECCSSCCSS--CCSCCCTTCCEEECCSSCCC-------CCCT-TTTTTCTTCSEEECCSSCCCEEEE-EEHHHHSCSC
T ss_pred             EEEcCCCCccc--CCCCCCCCCCEEECCCCccC-------ccCH-hHhhccccCCEEECCCCccCcccC-cccccccccc
Confidence            44444444444  343 3468999999999874       2332 236889999999999999875431 0134567899


Q ss_pred             CcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEcc
Q 035693          159 LQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLS  238 (348)
Q Consensus       159 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  238 (348)
                      |++|++++|.+.. ++..+..+++|++|++++|..........+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        80 L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  158 (306)
T 2z66_A           80 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA  158 (306)
T ss_dssp             CCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred             cCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence            9999999999886 666688899999999999954332223578899999999999999987777888899999999999


Q ss_pred             CCCCCC-CCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCc
Q 035693          239 YNSLLQ-GSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDP  317 (348)
Q Consensus       239 ~~~l~~-~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~  317 (348)
                      +|.+.. .....+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+.
T Consensus       159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence            998765 3456677799999999999999977688889999999999999999987676788899999999999999987


Q ss_pred             cCchhhhhhcCCCeeecccCccccc
Q 035693          318 IPTLRLYMSRNLNYLNLSSNDLTGG  342 (348)
Q Consensus       318 ~~~~~~~~~~~L~~L~l~~n~l~g~  342 (348)
                      .+..+...+++|++|++++|++++.
T Consensus       239 ~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          239 KKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             SSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             CHHHHHhhhccCCEEEccCCCeecc
Confidence            7766655545899999999999864

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=2.3e-26  Score=200.42  Aligned_cols=214  Identities=20%  Similarity=0.164  Sum_probs=122.7

Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCcc-CCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhc
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCL-LSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVAN  204 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~  204 (348)
                      +.++++|++|++++|.+....+   ..+..+++|++|++++|. +....+..+..+++|++|++++|. +....+..+..
T Consensus        52 ~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~  127 (285)
T 1ozn_A           52 FRACRNLTILWLHSNVLARIDA---AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRG  127 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred             cccCCCCCEEECCCCccceeCH---hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhC
Confidence            4555556666666555554433   345555666666666664 444445555566666666666653 33333445556


Q ss_pred             CCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEe
Q 035693          205 LLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVD  284 (348)
Q Consensus       205 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~  284 (348)
                      +++|++|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus       128 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  207 (285)
T 1ozn_A          128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (285)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEee
Confidence            66666666666666544444455666666666666665544444455566677777777766655566666666777777


Q ss_pred             ecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCC
Q 035693          285 VSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISS  345 (348)
Q Consensus       285 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~  345 (348)
                      +++|.+.+..+..+..+++|+.|++++|++.+..+....  ...++.+..+.+.+....|+
T Consensus       208 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~--~~~l~~~~~~~~~~~c~~p~  266 (285)
T 1ozn_A          208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSSEVPCSLPQ  266 (285)
T ss_dssp             CCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHH--HHHHHHCCSEECCCBEEESG
T ss_pred             CCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHH--HHHHHhcccccCccccCCch
Confidence            777777665555566667777777777776653332211  12334444555555555443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.94  E-value=1.3e-25  Score=216.64  Aligned_cols=130  Identities=25%  Similarity=0.246  Sum_probs=100.6

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCC--CCCCCCCcEEecCCCCCCCCcceeecCCChhhh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPM--PSSLPRLVTLDLSSREPISGFSWRLEIPNFNFF  126 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  126 (348)
                      .++++|+|++| .+.+--+.  .|.++++|++|+|++|.+++..-  ...+++|++|++++|.++.       ++. ..|
T Consensus        52 ~~~~~LdLs~N-~i~~l~~~--~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-------l~~-~~f  120 (635)
T 4g8a_A           52 FSTKNLDLSFN-PLRHLGSY--SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-------LAL-GAF  120 (635)
T ss_dssp             TTCCEEECTTS-CCCEECTT--TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-------ECG-GGG
T ss_pred             cCCCEEEeeCC-CCCCCCHH--HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-------CCH-HHh
Confidence            47999999999 88754444  78999999999999999987521  2279999999999998742       221 237


Q ss_pred             cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCc-chHHhhhccCCCEEEcccCC
Q 035693          127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDP-INHHLANLLSLSVIRLRDNH  192 (348)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~  192 (348)
                      .++++|++|++++|+++...+   ..+.++++|++|++++|.+... .|..+..+++|++|++++|.
T Consensus       121 ~~L~~L~~L~Ls~N~l~~l~~---~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          121 SGLSSLQKLVAVETNLASLEN---FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             TTCTTCCEEECTTSCCCCSTT---CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             cCCCCCCEEECCCCcCCCCCh---hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence            888889999998888877654   4577788888888888887653 56677778888888887764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=1.8e-25  Score=207.05  Aligned_cols=207  Identities=21%  Similarity=0.189  Sum_probs=150.4

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN  128 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  128 (348)
                      +++++|+++++ .+.+ +|   .+..+++|+.|++++|.+++.. ...+++|++|++++|.++.       ++    +.+
T Consensus        42 ~~L~~L~Ls~n-~l~~-~~---~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~-------~~----~~~  104 (457)
T 3bz5_A           42 ATLTSLDCHNS-SITD-MT---GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTN-------LD----VTP  104 (457)
T ss_dssp             TTCCEEECCSS-CCCC-CT---TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC-------CC----CTT
T ss_pred             CCCCEEEccCC-Cccc-Ch---hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCce-------ee----cCC
Confidence            67888999988 6664 34   5788889999999988888863 4478889999999887642       11    567


Q ss_pred             CCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCC
Q 035693          129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNL  208 (348)
Q Consensus       129 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L  208 (348)
                      +++|++|++++|+++...      +..+++|++|++++|.+++.   .+..+++|++|++++|..... +  .+..+++|
T Consensus       105 l~~L~~L~L~~N~l~~l~------~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~-~--~~~~l~~L  172 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTKLD------VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITK-L--DVTPQTQL  172 (457)
T ss_dssp             CTTCCEEECCSSCCSCCC------CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCC-C--CCTTCTTC
T ss_pred             CCcCCEEECCCCcCCeec------CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccc-c--ccccCCcC
Confidence            888888888888887642      67788888888888888773   266778888888888743332 2  35667778


Q ss_pred             CEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCC
Q 035693          209 TTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSC  288 (348)
Q Consensus       209 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n  288 (348)
                      ++|++++|.+.+ ++  +..+++|+.|++++|.+...   .+..+++|++|++++|++++ +|  ++.+++|+.|++++|
T Consensus       173 ~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          173 TTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             CEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSS
T ss_pred             CEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCC
Confidence            888888887764 33  56677777777777776543   35556777777777777774 44  566677777777777


Q ss_pred             ccCCC
Q 035693          289 NFTRP  293 (348)
Q Consensus       289 ~l~~~  293 (348)
                      .+.+.
T Consensus       244 ~l~~~  248 (457)
T 3bz5_A          244 PLTEL  248 (457)
T ss_dssp             CCSCC
T ss_pred             cCCCc
Confidence            77764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1.8e-25  Score=206.57  Aligned_cols=247  Identities=21%  Similarity=0.205  Sum_probs=199.3

Q ss_pred             EEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCC--CCCCCCcEEecCCCCCCCCcceeecCCChhhhcCC
Q 035693           52 IGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMP--SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNL  129 (348)
Q Consensus        52 ~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l  129 (348)
                      ..++.++. .+. .+|.  .+  .++++.|++++|.++.....  ..+++|++|++++|.+..      ..+  ..+.++
T Consensus        46 ~~v~c~~~-~l~-~iP~--~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~------i~~--~~~~~l  111 (440)
T 3zyj_A           46 SKVICVRK-NLR-EVPD--GI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT------IEI--GAFNGL  111 (440)
T ss_dssp             CEEECCSC-CCS-SCCS--CC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE------ECG--GGGTTC
T ss_pred             CEEEeCCC-CcC-cCCC--CC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc------cCh--hhccCC
Confidence            45555555 443 4554  33  36899999999998886222  278999999999998642      222  337889


Q ss_pred             CCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCC
Q 035693          130 TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLT  209 (348)
Q Consensus       130 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  209 (348)
                      ++|++|++++|+++....   ..+..+++|++|++++|.+....+..+..+++|++|++++|..........+.++++|+
T Consensus       112 ~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~  188 (440)
T 3zyj_A          112 ANLNTLELFDNRLTTIPN---GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR  188 (440)
T ss_dssp             SSCCEEECCSSCCSSCCT---TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC
T ss_pred             ccCCEEECCCCcCCeeCH---hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC
Confidence            999999999999987765   46788999999999999998876778889999999999987555544455788899999


Q ss_pred             EEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCc
Q 035693          210 TLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCN  289 (348)
Q Consensus       210 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~  289 (348)
                      +|++++|.+. .+| .+..+++|+.|++++|.+.......|..+++|++|++++|++.+..+..+..+++|+.|+|++|+
T Consensus       189 ~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  266 (440)
T 3zyj_A          189 YLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN  266 (440)
T ss_dssp             EEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred             eecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence            9999999987 555 47788999999999998877777788889999999999999987777788889999999999999


Q ss_pred             cCCCCcccccCCCCCCEEeCCCCccCCc
Q 035693          290 FTRPIPTSMANLTQLFHLDFSSNHFSDP  317 (348)
Q Consensus       290 l~~~~~~~l~~~~~L~~L~l~~n~l~~~  317 (348)
                      ++...+..+..+++|+.|++++|++..+
T Consensus       267 l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          267 LTLLPHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             CCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred             CCccChhHhccccCCCEEEcCCCCccCC
Confidence            9987777788889999999999998764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.8e-25  Score=207.33  Aligned_cols=228  Identities=21%  Similarity=0.202  Sum_probs=167.5

Q ss_pred             cccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhh
Q 035693           76 QYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA  152 (348)
Q Consensus        76 ~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  152 (348)
                      ++|+.|++++|.+++. .+.   .+++|++|++++|.+.      ...+..  +.++++|++|++++|++....+   ..
T Consensus        75 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~  142 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIR------QIEVGA--FNGLASLNTLELFDNWLTVIPS---GA  142 (452)
T ss_dssp             TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCC------EECTTT--TTTCTTCCEEECCSSCCSBCCT---TT
T ss_pred             CCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccC------CcChhh--ccCcccCCEEECCCCcCCccCh---hh
Confidence            5788888888888775 222   7788888888888763      222233  6778888888888888776654   45


Q ss_pred             hCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCc
Q 035693          153 MSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTL  232 (348)
Q Consensus       153 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L  232 (348)
                      +..+++|++|++++|.+....+..+..+++|++|++++|..........+..+++|++|++++|.+.+ +| .+..+++|
T Consensus       143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L  220 (452)
T 3zyi_A          143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGL  220 (452)
T ss_dssp             SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTC
T ss_pred             hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccc
Confidence            67788888888888888776566777888888888887644444444467777888888888887763 33 46677788


Q ss_pred             cEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCC
Q 035693          233 ETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSN  312 (348)
Q Consensus       233 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n  312 (348)
                      +.|++++|.+.......|..+++|++|++++|.+.+..+..+..+++|+.|+|++|.+....+..+..+++|+.|++++|
T Consensus       221 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred             cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence            88888888776666666777778888888888887666667777788888888888888766666677788888888888


Q ss_pred             ccCCc
Q 035693          313 HFSDP  317 (348)
Q Consensus       313 ~l~~~  317 (348)
                      ++.++
T Consensus       301 p~~Cd  305 (452)
T 3zyi_A          301 PWNCD  305 (452)
T ss_dssp             CEECS
T ss_pred             CcCCC
Confidence            87654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=6.2e-25  Score=204.53  Aligned_cols=259  Identities=24%  Similarity=0.283  Sum_probs=145.2

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN  128 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  128 (348)
                      .++++|+++++ .+. .+|   .+..+++|+.|++++|.+++......+++|++|++++|.+...       +.   +.+
T Consensus        46 ~~l~~L~l~~~-~i~-~l~---~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-------~~---~~~  110 (466)
T 1o6v_A           46 DQVTTLQADRL-GIK-SID---GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-------TP---LAN  110 (466)
T ss_dssp             HTCCEEECCSS-CCC-CCT---TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-------GG---GTT
T ss_pred             ccccEEecCCC-CCc-cCc---chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccC-------hh---hcC
Confidence            57999999998 664 354   5889999999999999998863334899999999999987531       11   567


Q ss_pred             CCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcch-------------------HHhhhccCCCEEEcc
Q 035693          129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPIN-------------------HHLANLLSLSVIRLR  189 (348)
Q Consensus       129 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------------~~~~~~~~L~~L~l~  189 (348)
                      +++|++|++++|.+.+..+     +..+++|++|++++|.+.+...                   ..+..+++|++|+++
T Consensus       111 l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~  185 (466)
T 1o6v_A          111 LTNLTGLTLFNNQITDIDP-----LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS  185 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG-----GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECC
T ss_pred             CCCCCEEECCCCCCCCChH-----HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECc
Confidence            7888888888887766532     5666777777777666554210                   113344455555555


Q ss_pred             cCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCC--------------------
Q 035693          190 DNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPH--------------------  249 (348)
Q Consensus       190 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~--------------------  249 (348)
                      +|.. ...  ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+..  .+.                    
T Consensus       186 ~n~l-~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~  258 (466)
T 1o6v_A          186 SNKV-SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL  258 (466)
T ss_dssp             SSCC-CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC
T ss_pred             CCcC-CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc--chhhhcCCCCCEEECCCCccccc
Confidence            5532 111  224444555555555554443222  3334444444444444321  122                    


Q ss_pred             --CCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhc
Q 035693          250 --FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSR  327 (348)
Q Consensus       250 --~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  327 (348)
                        +..+++|++|++++|.+.+. +. +..+++|+.|++++|.+.+..+  +..+++|+.|++++|++.+..+   ...++
T Consensus       259 ~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~  331 (466)
T 1o6v_A          259 APLSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLT  331 (466)
T ss_dssp             GGGTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG---GGGCT
T ss_pred             hhhhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh---hccCc
Confidence              33344444444444444422 11 3444455555555555544222  3445555555555555554322   22335


Q ss_pred             CCCeeecccCcccc
Q 035693          328 NLNYLNLSSNDLTG  341 (348)
Q Consensus       328 ~L~~L~l~~n~l~g  341 (348)
                      +|++|++++|.+++
T Consensus       332 ~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          332 KLQRLFFYNNKVSD  345 (466)
T ss_dssp             TCCEEECCSSCCCC
T ss_pred             cCCEeECCCCccCC
Confidence            55555555555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.7e-25  Score=205.48  Aligned_cols=226  Identities=23%  Similarity=0.244  Sum_probs=150.9

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCC--CCCCCCCcEEecCCCCCCCCcceeecCCChhhh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPM--PSSLPRLVTLDLSSREPISGFSWRLEIPNFNFF  126 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  126 (348)
                      .+++.|+|++| .+.+..+.  .+.++++|+.|++++|.++....  ...+++|++|++++|.++.       ++. ..+
T Consensus        64 ~~l~~L~L~~n-~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-------~~~-~~~  132 (440)
T 3zyj_A           64 TNTRLLNLHEN-QIQIIKVN--SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT-------IPN-GAF  132 (440)
T ss_dssp             TTCSEEECCSC-CCCEECTT--TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS-------CCT-TTS
T ss_pred             CCCcEEEccCC-cCCeeCHH--HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe-------eCH-hHh
Confidence            45777777777 66544443  67777777777777777766421  1267777777777776531       111 226


Q ss_pred             cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCcc-CCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC
Q 035693          127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCL-LSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL  205 (348)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l  205 (348)
                      ..+++|++|++++|++.....   ..+..+++|++|++++|. +....+..+..+++|++|++++|....  ++ .+..+
T Consensus       133 ~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l  206 (440)
T 3zyj_A          133 VYLSKLKELWLRNNPIESIPS---YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLTPL  206 (440)
T ss_dssp             CSCSSCCEEECCSCCCCEECT---TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CC-CCTTC
T ss_pred             hccccCceeeCCCCcccccCH---HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--cc-ccCCC
Confidence            677777777777777765554   356677777777777743 333333456777777777777774332  22 35667


Q ss_pred             CCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEee
Q 035693          206 LNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDV  285 (348)
Q Consensus       206 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L  285 (348)
                      ++|++|++++|.+.+..+..+..+++|+.|++++|.+.......|..+++|++|++++|++++..+..+..+++|+.|++
T Consensus       207 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  286 (440)
T 3zyj_A          207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL  286 (440)
T ss_dssp             SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEEC
T ss_pred             cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEc
Confidence            77777777777777655667777777777777777776666666777777777777777777555555666777777777


Q ss_pred             cCCccC
Q 035693          286 SSCNFT  291 (348)
Q Consensus       286 ~~n~l~  291 (348)
                      ++|++.
T Consensus       287 ~~Np~~  292 (440)
T 3zyj_A          287 HHNPWN  292 (440)
T ss_dssp             CSSCEE
T ss_pred             CCCCcc
Confidence            777765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=4.4e-25  Score=192.25  Aligned_cols=211  Identities=23%  Similarity=0.256  Sum_probs=181.9

Q ss_pred             CCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCC
Q 035693          129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNL  208 (348)
Q Consensus       129 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L  208 (348)
                      .++|++|++++|.+....+   ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.......+..+..+++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L  107 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPA---ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (285)
T ss_dssp             CTTCSEEECTTSCCCEECT---TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCceEEEeeCCcCCccCH---HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence            4578888888888877654   4678899999999999999987788999999999999999954555557788899999


Q ss_pred             CEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCC
Q 035693          209 TTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSC  288 (348)
Q Consensus       209 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n  288 (348)
                      ++|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus       108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  187 (285)
T 1ozn_A          108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (285)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence            99999999998777788899999999999999987666666888999999999999998555556888999999999999


Q ss_pred             ccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccC
Q 035693          289 NFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGI  343 (348)
Q Consensus       289 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~i  343 (348)
                      .+.+..+..+..+++|+.|++++|++.+ ++...+..+++|++|++++|+++...
T Consensus       188 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          188 RVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             cccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCccCCC
Confidence            9999888899999999999999999987 55444555689999999999987543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.4e-25  Score=199.11  Aligned_cols=206  Identities=20%  Similarity=0.292  Sum_probs=179.1

Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhh--
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVA--  203 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~--  203 (348)
                      +.++++|++|++++|.+...+    ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.. ...++..+.  
T Consensus       100 l~~l~~L~~L~L~~n~l~~lp----~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~-~~~~p~~~~~~  173 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAAGLMELP----DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE-LTELPEPLAST  173 (328)
T ss_dssp             GGGGTTCSEEEEESSCCCCCC----SCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETT-CCCCCSCSEEE
T ss_pred             hhhCCCCCEEECCCCCccchh----HHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCC-ccccChhHhhc
Confidence            667889999999999988443    45788999999999999999 4788999999999999999744 334555444  


Q ss_pred             -------cCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccC
Q 035693          204 -------NLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGN  276 (348)
Q Consensus       204 -------~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~  276 (348)
                             .+++|++|++++|.+. .+|..+..+++|++|++++|.+.. .++.+..+++|++|++++|.+.+.+|..++.
T Consensus       174 ~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~  251 (328)
T 4fcg_A          174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGG  251 (328)
T ss_dssp             C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred             cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcC
Confidence                   4899999999999998 888889999999999999998763 3445777899999999999998889999999


Q ss_pred             CCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccc
Q 035693          277 LENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT  340 (348)
Q Consensus       277 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  340 (348)
                      +++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+... ++|+.+++..+.+.
T Consensus       252 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L-~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL-PANCIILVPPHLQA  314 (328)
T ss_dssp             CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS-CTTCEEECCGGGSC
T ss_pred             CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc-cCceEEeCCHHHHH
Confidence            9999999999999999899999999999999999999999999887654 89999999987664

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.8e-25  Score=207.37  Aligned_cols=226  Identities=20%  Similarity=0.192  Sum_probs=190.1

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF  125 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  125 (348)
                      .++++|+|++| .+.+..+.  .+.++++|+.|++++|.+++. .+.   .+++|++|++++|.+..      ..+.  .
T Consensus        75 ~~l~~L~L~~n-~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~------~~~~--~  142 (452)
T 3zyi_A           75 SNTRYLNLMEN-NIQMIQAD--TFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTV------IPSG--A  142 (452)
T ss_dssp             TTCSEEECCSS-CCCEECTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSB------CCTT--T
T ss_pred             CCccEEECcCC-cCceECHH--HcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCc------cChh--h
Confidence            58999999999 88766665  789999999999999999886 322   79999999999998742      2222  3


Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCcc-CCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhc
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCL-LSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVAN  204 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~  204 (348)
                      +.++++|++|++++|++.....   ..+..+++|++|++++|. +....+..+..+++|++|++++|....  + ..+..
T Consensus       143 ~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~-~~~~~  216 (452)
T 3zyi_A          143 FEYLSKLRELWLRNNPIESIPS---YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--M-PNLTP  216 (452)
T ss_dssp             SSSCTTCCEEECCSCCCCEECT---TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--C-CCCTT
T ss_pred             hcccCCCCEEECCCCCcceeCH---hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--c-ccccc
Confidence            7889999999999999987665   467889999999999954 444444578899999999999995432  2 34778


Q ss_pred             CCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEe
Q 035693          205 LLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVD  284 (348)
Q Consensus       205 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~  284 (348)
                      +++|++|++++|.+.+..+..+..+++|+.|++++|.+.......|..+++|+.|++++|++++..+..+..+++|+.|+
T Consensus       217 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  296 (452)
T 3zyi_A          217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH  296 (452)
T ss_dssp             CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE
T ss_pred             cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE
Confidence            89999999999999977788899999999999999998877778888899999999999999966666778899999999


Q ss_pred             ecCCccCC
Q 035693          285 VSSCNFTR  292 (348)
Q Consensus       285 L~~n~l~~  292 (348)
                      +++|++..
T Consensus       297 L~~Np~~C  304 (452)
T 3zyi_A          297 LHHNPWNC  304 (452)
T ss_dssp             CCSSCEEC
T ss_pred             ccCCCcCC
Confidence            99999874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.93  E-value=3.2e-24  Score=198.73  Aligned_cols=267  Identities=16%  Similarity=0.156  Sum_probs=145.3

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN  128 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  128 (348)
                      .++++|++++| .+.+ +    .+..+++|+.|++++|.+++.. ...+++|++|++++|.++.       ++    +.+
T Consensus        64 ~~L~~L~Ls~n-~l~~-~----~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~-------l~----~~~  125 (457)
T 3bz5_A           64 TGLTKLICTSN-NITT-L----DLSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTK-------LD----VSQ  125 (457)
T ss_dssp             TTCSEEECCSS-CCSC-C----CCTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSC-------CC----CTT
T ss_pred             CCCCEEEccCC-cCCe-E----ccccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCe-------ec----CCC
Confidence            56777777777 5543 2    2556667777777777666652 3356666666666665532       11    344


Q ss_pred             CCCCcEEEccCcCCCCcchhhh----------------hhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCC
Q 035693          129 LTELRELYLDNVDLSGRRTEWC----------------KAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNH  192 (348)
Q Consensus       129 l~~L~~L~l~~~~~~~~~~~~~----------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  192 (348)
                      +++|++|++++|+++.....-.                ..+..+++|++|++++|.+++ ++  +..+++|+.|++++|.
T Consensus       126 l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~  202 (457)
T 3bz5_A          126 NPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNN  202 (457)
T ss_dssp             CTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSC
T ss_pred             CCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCc
Confidence            5555555555555443210000                013344555555555555554 22  4455556666665553


Q ss_pred             CCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCC---------------------
Q 035693          193 AVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFP---------------------  251 (348)
Q Consensus       193 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~---------------------  251 (348)
                      ... .   .+..+++|++|++++|.+.+ +|  +..+++|+.|++++|.+.......+.                     
T Consensus       203 l~~-~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~  275 (457)
T 3bz5_A          203 ITK-L---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNT  275 (457)
T ss_dssp             CSC-C---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred             CCe-e---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCc
Confidence            222 1   24555666666666666653 33  45556666666666655433222211                     


Q ss_pred             --------CCCCCcEEEcccCCCCCCCCc--------cccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccC
Q 035693          252 --------KNSSLRNLNLKNTSFSGKLPD--------SIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFS  315 (348)
Q Consensus       252 --------~~~~L~~L~ls~n~~~~~~~~--------~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~  315 (348)
                              .+++|+.|++++|...+.+|.        .+..+++|++|++++|++++ ++  +..+++|+.|++++|++.
T Consensus       276 ~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~  352 (457)
T 3bz5_A          276 QLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQ  352 (457)
T ss_dssp             TCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCC
T ss_pred             cCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCC
Confidence                    124444555555543322221        13445677777777777777 32  667778888888888876


Q ss_pred             CccCchh--------h---hhhcCCCeeecccCcccccCCCCC
Q 035693          316 DPIPTLR--------L---YMSRNLNYLNLSSNDLTGGISSNI  347 (348)
Q Consensus       316 ~~~~~~~--------~---~~~~~L~~L~l~~n~l~g~ip~~~  347 (348)
                      + ++...        +   ..+..|..+++++|+++|+||..+
T Consensus       353 ~-l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          353 D-FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             B-CTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTC
T ss_pred             C-ccccccccccCCcEEecceeeecCccccccCcEEEEcChhH
Confidence            5 33210        0   011456777888888888888764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=1.5e-25  Score=201.22  Aligned_cols=255  Identities=20%  Similarity=0.205  Sum_probs=204.4

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF  125 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  125 (348)
                      +++++|++++| .+.+..+.  .+.++++|+.|++++|.+++. .+.   .+++|++|++++|.++.       ++ ...
T Consensus        52 ~~L~~L~l~~n-~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~-------~~-~~~  119 (353)
T 2z80_A           52 EAVKSLDLSNN-RITYISNS--DLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNYLSN-------LS-SSW  119 (353)
T ss_dssp             TTCCEEECTTS-CCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSS-------CC-HHH
T ss_pred             ccCcEEECCCC-cCcccCHH--HhccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCcCCc-------CC-HhH
Confidence            68999999999 77654433  689999999999999999886 332   78999999999998742       22 233


Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCc-cCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhc
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNC-LLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVAN  204 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~  204 (348)
                      +.++++|++|++++|++......  ..+..+++|++|++++| .+....+..+..+++|++|++++|. .....+..+..
T Consensus       120 ~~~l~~L~~L~L~~n~l~~l~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~  196 (353)
T 2z80_A          120 FKPLSSLTFLNLLGNPYKTLGET--SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKS  196 (353)
T ss_dssp             HTTCTTCSEEECTTCCCSSSCSS--CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTT
T ss_pred             hCCCccCCEEECCCCCCcccCch--hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhc
Confidence            78899999999999999865431  24778999999999999 4666567788999999999999994 55556778899


Q ss_pred             CCCCCEEEccCCcCCCccccc-ccCCCCccEEEccCCCCCCCCCCCCC---CCCCCcEEEcccCCCCC----CCCccccC
Q 035693          205 LLNLTTLDLSQCDLHGKFPEK-VLQVPTLETLDLSYNSLLQGSLPHFP---KNSSLRNLNLKNTSFSG----KLPDSIGN  276 (348)
Q Consensus       205 l~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~~~~~~---~~~~L~~L~ls~n~~~~----~~~~~l~~  276 (348)
                      +++|++|++++|.+. ..+.. +..+++|+.|++++|.+.......+.   ....++.++++++.+.+    .+|..+..
T Consensus       197 l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~  275 (353)
T 2z80_A          197 IQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ  275 (353)
T ss_dssp             CSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHT
T ss_pred             cccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhc
Confidence            999999999999986 44443 44589999999999988765544433   36678899999988764    35667888


Q ss_pred             CCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccC
Q 035693          277 LENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIP  319 (348)
Q Consensus       277 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~  319 (348)
                      +++|++|++++|.+....+..+..+++|+.|++++|++.+..+
T Consensus       276 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          276 ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            9999999999999997433445889999999999999998655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=3e-26  Score=202.73  Aligned_cols=266  Identities=17%  Similarity=0.148  Sum_probs=208.6

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCC---CCCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMP---SSLPRLVTLDLSSREPISGFSWRLEIPNFNF  125 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  125 (348)
                      ..++..+++.+ .+......  .+..+++|+.|++++|.+++. .+   ..+++|++|++++|.+..       .+.   
T Consensus        10 ~~l~i~~ls~~-~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~-------~~~---   75 (317)
T 3o53_A           10 NRYKIEKVTDS-SLKQALAS--LRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYE-------TLD---   75 (317)
T ss_dssp             TEEEEESCCTT-THHHHHHH--HHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEE-------EEE---
T ss_pred             CceeEeecccc-chhhhHHH--HhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCc-------chh---
Confidence            34667778877 66544443  455778999999999999885 33   289999999999998642       111   


Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL  205 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l  205 (348)
                      +..+++|++|++++|.+.+..        ..++|++|++++|.+.+..+.   .+++|++|++++|. +....+..+..+
T Consensus        76 ~~~l~~L~~L~Ls~n~l~~l~--------~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~-l~~~~~~~~~~l  143 (317)
T 3o53_A           76 LESLSTLRTLDLNNNYVQELL--------VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNK-ITMLRDLDEGCR  143 (317)
T ss_dssp             ETTCTTCCEEECCSSEEEEEE--------ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSC-CCSGGGBCTGGG
T ss_pred             hhhcCCCCEEECcCCcccccc--------CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCC-CCCccchhhhcc
Confidence            678899999999999886543        348999999999999875443   36789999999994 454555677889


Q ss_pred             CCCCEEEccCCcCCCcccccc-cCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEe
Q 035693          206 LNLTTLDLSQCDLHGKFPEKV-LQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVD  284 (348)
Q Consensus       206 ~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~  284 (348)
                      ++|++|++++|.+.+..+..+ ..+++|++|++++|.+...  +....+++|++|++++|.++ .++..+..+++|+.|+
T Consensus       144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~  220 (317)
T 3o53_A          144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS  220 (317)
T ss_dssp             SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEE
T ss_pred             CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCC-cchhhhcccCcccEEE
Confidence            999999999999986656655 4689999999999987544  44445889999999999998 5566688899999999


Q ss_pred             ecCCccCCCCcccccCCCCCCEEeCCCCccC-CccCchhhhhhcCCCeeecccC-cccccCCC
Q 035693          285 VSSCNFTRPIPTSMANLTQLFHLDFSSNHFS-DPIPTLRLYMSRNLNYLNLSSN-DLTGGISS  345 (348)
Q Consensus       285 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~L~~L~l~~n-~l~g~ip~  345 (348)
                      +++|.+.. +|..+..+++|+.|++++|++. +.++..+ ...++|+.++++++ .++|..|.
T Consensus       221 L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~-~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          221 LRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHH-HTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             CcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHH-hccccceEEECCCchhccCCchh
Confidence            99999997 7778888999999999999998 4444444 34478999999855 67766654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=7.4e-27  Score=206.12  Aligned_cols=248  Identities=23%  Similarity=0.260  Sum_probs=144.6

Q ss_pred             ccccccCEEeCCCCCCCCCCCCC-CCCCCcEEecCCCCCCCCcceeecCCChhhhc-------CCCCCcEEEccCcCCCC
Q 035693           73 FSLQYLQSLNLGFTLFYGFPMPS-SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQ-------NLTELRELYLDNVDLSG  144 (348)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~  144 (348)
                      ...++|+.|++++|.+ .  +|. -...|++|++++|.+.     ...++..  +.       ++++|++|++++|++++
T Consensus        40 ~~~~~L~~l~l~~n~l-~--~p~~~~~~L~~L~L~~n~l~-----~~~~~~~--~~~~~~~~~~l~~L~~L~L~~n~l~~  109 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE-A--DLGQFTDIIKSLSLKRLTVR-----AARIPSR--ILFGALRVLGISGLQELTLENLEVTG  109 (312)
T ss_dssp             EEEEECTTHHHHCCTT-C--CCHHHHHHHHHCCCCEEEEE-----EEECBHH--HHHHHHHHHTTSCCCEEEEEEEBCBS
T ss_pred             ccCCCceeEeeccccc-c--cHHHHHHHHhhccccccccc-----CCCcCHH--HHHHHHHhcCcCCccEEEccCCcccc
Confidence            3445555555555555 1  343 1112555555555432     1222222  22       46667777777776664


Q ss_pred             cchhhhhhh--CCCCCCcEEEccCccCCCcchHHhhhc-----cCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCc
Q 035693          145 RRTEWCKAM--SFLPNLQVLNLSNCLLSDPINHHLANL-----LSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCD  217 (348)
Q Consensus       145 ~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  217 (348)
                      ..+   ..+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|. +....+..+..+++|++|++++|.
T Consensus       110 ~~~---~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          110 TAP---PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNP  184 (312)
T ss_dssp             CCC---CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCT
T ss_pred             hhH---HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCC
Confidence            433   222  5666777777777776664 5555555     677777777763 343444566667777777777776


Q ss_pred             CCCc--ccccc--cCCCCccEEEccCCCCCCCC---CCCCCCCCCCcEEEcccCCCCCCCC-ccccCCCCCCEEeecCCc
Q 035693          218 LHGK--FPEKV--LQVPTLETLDLSYNSLLQGS---LPHFPKNSSLRNLNLKNTSFSGKLP-DSIGNLENLASVDVSSCN  289 (348)
Q Consensus       218 ~~~~--~~~~l--~~~~~L~~L~l~~~~l~~~~---~~~~~~~~~L~~L~ls~n~~~~~~~-~~l~~~~~L~~L~L~~n~  289 (348)
                      +.+.  .+..+  ..+++|++|++++|.+....   ...+..+++|++|++++|.+.+..| ..+..+++|++|++++|.
T Consensus       185 l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG  264 (312)
T ss_dssp             TCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred             cCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence            5533  22233  56677777777777653210   0112235677777777777765443 334456777777777777


Q ss_pred             cCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccc
Q 035693          290 FTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG  341 (348)
Q Consensus       290 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g  341 (348)
                      ++. +|..+.  ++|+.|++++|++.+ +|.  +..+++|++|++++|++++
T Consensus       265 l~~-ip~~~~--~~L~~L~Ls~N~l~~-~p~--~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          265 LKQ-VPKGLP--AKLSVLDLSYNRLDR-NPS--PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CSS-CCSSCC--SEEEEEECCSSCCCS-CCC--TTTSCEEEEEECTTCTTTC
T ss_pred             cCh-hhhhcc--CCceEEECCCCCCCC-Chh--HhhCCCCCEEeccCCCCCC
Confidence            774 555544  677788888887776 354  3344777888888887765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=9.4e-25  Score=208.42  Aligned_cols=268  Identities=22%  Similarity=0.234  Sum_probs=177.3

Q ss_pred             ccCCCCCCCCCCccccceE--------eCCCCCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCC
Q 035693           26 AKMSQWSESTDCCDWNGVD--------CDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSL   97 (348)
Q Consensus        26 ~~~~~w~~~~~~~~~~~~~--------c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   97 (348)
                      +..+.|..+.++|.|.+..        |.. .+++.|+++++ .+. .+|.  .+.  ++|+.|++++|.++.  ++..+
T Consensus        10 ~~w~~W~~~~~~~~~~~r~~~~~~~~~c~~-~~l~~L~ls~n-~L~-~lp~--~l~--~~L~~L~L~~N~l~~--lp~~l   80 (622)
T 3g06_A           10 AVWSAWRRAAPAEESRGRAAVVQKMRACLN-NGNAVLNVGES-GLT-TLPD--CLP--AHITTLVIPDNNLTS--LPALP   80 (622)
T ss_dssp             CHHHHHHHTCCGGGHHHHHHHHHHHHHHHH-HCCCEEECCSS-CCS-CCCS--CCC--TTCSEEEECSCCCSC--CCCCC
T ss_pred             HHHHHHHhcCCcchhccccccCcccccccC-CCCcEEEecCC-CcC-ccCh--hhC--CCCcEEEecCCCCCC--CCCcC
Confidence            3455677788899986632        221 45888999988 775 6665  343  788889998888886  56688


Q ss_pred             CCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHh
Q 035693           98 PRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHL  177 (348)
Q Consensus        98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  177 (348)
                      ++|++|++++|.++       .+|.     .+++|++|++++|.++..+.       .+++|++|++++|.++. +|.  
T Consensus        81 ~~L~~L~Ls~N~l~-------~lp~-----~l~~L~~L~Ls~N~l~~l~~-------~l~~L~~L~L~~N~l~~-lp~--  138 (622)
T 3g06_A           81 PELRTLEVSGNQLT-------SLPV-----LPPGLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLTS-LPV--  138 (622)
T ss_dssp             TTCCEEEECSCCCS-------CCCC-----CCTTCCEEEECSCCCCCCCC-------CCTTCCEEECCSSCCSC-CCC--
T ss_pred             CCCCEEEcCCCcCC-------cCCC-----CCCCCCEEECcCCcCCCCCC-------CCCCcCEEECCCCCCCc-CCC--
Confidence            88888888888764       2222     45677777777777765432       34566666666666655 332  


Q ss_pred             hhccCCCEEEcccCCCCCCChhhhh-----------------hcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCC
Q 035693          178 ANLLSLSVIRLRDNHAVSCQVPEFV-----------------ANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYN  240 (348)
Q Consensus       178 ~~~~~L~~L~l~~~~~~~~~~~~~l-----------------~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  240 (348)
                       .+++|++|++++|....  ++..+                 ..+++|+.|++++|.+. .+|.   .+++|+.|++++|
T Consensus       139 -~l~~L~~L~Ls~N~l~~--l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N  211 (622)
T 3g06_A          139 -LPPGLQELSVSDNQLAS--LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA-SLPT---LPSELYKLWAYNN  211 (622)
T ss_dssp             -CCTTCCEEECCSSCCSC--CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS
T ss_pred             -CCCCCCEEECcCCcCCC--cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC-CCCC---ccchhhEEECcCC
Confidence             13566666666663221  11110                 22355666666666655 2332   2355666666666


Q ss_pred             CCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCc
Q 035693          241 SLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPT  320 (348)
Q Consensus       241 ~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~  320 (348)
                      .+..  ++.  ..++|++|++++|.+++ +|   ..+++|+.|++++|.+.. +|.   .+++|+.|++++|++. .+|.
T Consensus       212 ~l~~--l~~--~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~  278 (622)
T 3g06_A          212 RLTS--LPA--LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPE  278 (622)
T ss_dssp             CCSS--CCC--CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred             cccc--cCC--CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCH
Confidence            5432  111  13678899999998883 55   345789999999999986 554   5678999999999998 4777


Q ss_pred             hhhhhhcCCCeeecccCcccccCCC
Q 035693          321 LRLYMSRNLNYLNLSSNDLTGGISS  345 (348)
Q Consensus       321 ~~~~~~~~L~~L~l~~n~l~g~ip~  345 (348)
                      .+. .+++|+.|+|++|.++|.+|.
T Consensus       279 ~l~-~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          279 SLI-HLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             GGG-GSCTTCEEECCSCCCCHHHHH
T ss_pred             HHh-hccccCEEEecCCCCCCcCHH
Confidence            644 458999999999999877654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=9.9e-27  Score=205.31  Aligned_cols=270  Identities=23%  Similarity=0.265  Sum_probs=206.0

Q ss_pred             CCCCCCCCCCccccceEeCC-CCCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC----------C
Q 035693           28 MSQWSESTDCCDWNGVDCDE-AGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS----------S   96 (348)
Q Consensus        28 ~~~w~~~~~~~~~~~~~c~~-~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~----------~   96 (348)
                      .+.|.....|+.+..+.... ..++++|+++++ .+  .+|.  .+...  |+.|++++|.+....++.          .
T Consensus        21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n-~l--~~p~--~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~   93 (312)
T 1wwl_A           21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVD-TE--ADLG--QFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLG   93 (312)
T ss_dssp             SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCC-TT--CCCH--HHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHT
T ss_pred             ccchHHHhhhhccccEEEEccCCCceeEeeccc-cc--ccHH--HHHHH--HhhcccccccccCCCcCHHHHHHHHHhcC
Confidence            45666555565554443221 156888888888 66  5554  45444  999999999886654554          4


Q ss_pred             CCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCC--CCCCcEEEccCccCCCcch
Q 035693           97 LPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSF--LPNLQVLNLSNCLLSDPIN  174 (348)
Q Consensus        97 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~  174 (348)
                      +++|++|++++|.+.      ..+|..-++..+++|++|++++|++++. +..+..+..  .++|++|++++|.+.+..+
T Consensus        94 l~~L~~L~L~~n~l~------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~  166 (312)
T 1wwl_A           94 ISGLQELTLENLEVT------GTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSC  166 (312)
T ss_dssp             TSCCCEEEEEEEBCB------SCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCT
T ss_pred             cCCccEEEccCCccc------chhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchH
Confidence            899999999999874      2344431138899999999999999887 433333322  3899999999999999777


Q ss_pred             HHhhhccCCCEEEcccCCCCCC-Chhhhh--hcCCCCCEEEccCCcCCC--ccc-ccccCCCCccEEEccCCCCCCCC-C
Q 035693          175 HHLANLLSLSVIRLRDNHAVSC-QVPEFV--ANLLNLTTLDLSQCDLHG--KFP-EKVLQVPTLETLDLSYNSLLQGS-L  247 (348)
Q Consensus       175 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~l--~~l~~L~~L~l~~~~~~~--~~~-~~l~~~~~L~~L~l~~~~l~~~~-~  247 (348)
                      ..+..+++|++|++++|+.... ..+..+  ..+++|++|++++|.+.+  ..+ ..+..+++|+.|++++|.+.... .
T Consensus       167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  246 (312)
T 1wwl_A          167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA  246 (312)
T ss_dssp             TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC
T ss_pred             HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch
Confidence            8999999999999999953221 123344  788999999999999873  222 33457899999999999986655 3


Q ss_pred             CCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCC
Q 035693          248 PHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSD  316 (348)
Q Consensus       248 ~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~  316 (348)
                      +.+..+++|++|++++|.++ .+|..+.  ++|++|++++|++.+. |. +..+++|+.|++++|++++
T Consensus       247 ~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          247 PSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             hhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            55566889999999999998 7777665  7999999999999984 65 8889999999999999986

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.92  E-value=8.2e-24  Score=204.10  Aligned_cols=110  Identities=24%  Similarity=0.163  Sum_probs=72.4

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCC--CCCCCCCcEEecCCCCCCCCcceeecCCChhhh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPM--PSSLPRLVTLDLSSREPISGFSWRLEIPNFNFF  126 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  126 (348)
                      ++|++|+|++| .+.+--+.  ++.++++|++|+|++|.+++...  ...+++|++|++++|.++.       ++. ..+
T Consensus        76 ~~L~~L~Ls~N-~i~~i~~~--~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~-------l~~-~~~  144 (635)
T 4g8a_A           76 PELQVLDLSRC-EIQTIEDG--AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-------LEN-FPI  144 (635)
T ss_dssp             TTCCEEECTTC-CCCEECTT--TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC-------STT-CCC
T ss_pred             CCCCEEECCCC-cCCCcChh--HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC-------CCh-hhh
Confidence            68899999998 77643333  68888999999999988877421  1278888888888887642       111 125


Q ss_pred             cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCC
Q 035693          127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSD  171 (348)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  171 (348)
                      .++++|++|++++|.+.....  ...+..+++|++|++++|.+++
T Consensus       145 ~~L~~L~~L~Ls~N~l~~~~~--~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          145 GHLKTLKELNVAHNLIQSFKL--PEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             TTCTTCCEEECCSSCCCCCCC--CGGGGGCTTCCEEECCSSCCCE
T ss_pred             hcCcccCeeccccCccccCCC--chhhccchhhhhhcccCccccc
Confidence            666777777777776654321  1344556666666666665543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=5.4e-24  Score=184.06  Aligned_cols=183  Identities=21%  Similarity=0.246  Sum_probs=101.5

Q ss_pred             CCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCcc
Q 035693          154 SFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLE  233 (348)
Q Consensus       154 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~  233 (348)
                      ..+++|++|++++|.+.+ + ..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        60 ~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  136 (272)
T 3rfs_A           60 QYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT  136 (272)
T ss_dssp             GGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence            334444444444444443 1 134444445555554442 2222333344555555555555555543334455556666


Q ss_pred             EEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCc
Q 035693          234 TLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNH  313 (348)
Q Consensus       234 ~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~  313 (348)
                      .|++++|.+.......+..+++|++|++++|.+++..+..++.+++|++|++++|.+.+..+..+..+++|+.|++++|+
T Consensus       137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence            66666665543333345556666666666666664444445666667777777777766555556666777777777776


Q ss_pred             cCCccCchhhhhhcCCCeeecccCcccccCCCCC
Q 035693          314 FSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNI  347 (348)
Q Consensus       314 l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~~  347 (348)
                      +.+.        +++|+.|+++.|.++|.+|.++
T Consensus       217 ~~~~--------~~~l~~l~~~~n~~~g~ip~~~  242 (272)
T 3rfs_A          217 WDCT--------CPGIRYLSEWINKHSGVVRNSA  242 (272)
T ss_dssp             BCCC--------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred             cccc--------CcHHHHHHHHHHhCCCcccCcc
Confidence            6542        2456666777777777776643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.4e-23  Score=181.21  Aligned_cols=217  Identities=23%  Similarity=0.296  Sum_probs=101.4

Q ss_pred             CCCCccccceEeCCCCCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCC
Q 035693           34 STDCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISG  113 (348)
Q Consensus        34 ~~~~~~~~~~~c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  113 (348)
                      ++++|.|.|+.|....++++++++++ .+. .+|.  .+  .++|+.|++++|.+++.. +                   
T Consensus         1 ~~~~C~~~~~~C~c~~~~~~l~~~~~-~l~-~ip~--~~--~~~l~~L~l~~n~l~~~~-~-------------------   54 (270)
T 2o6q_A            1 NEALCKKDGGVCSCNNNKNSVDCSSK-KLT-AIPS--NI--PADTKKLDLQSNKLSSLP-S-------------------   54 (270)
T ss_dssp             CCCCBGGGTCSBEEETTTTEEECTTS-CCS-SCCS--CC--CTTCSEEECCSSCCSCCC-T-------------------
T ss_pred             CCccCCCCCCCCEeCCCCCEEEccCC-CCC-ccCC--CC--CCCCCEEECcCCCCCeeC-H-------------------
Confidence            46899999999865556678888887 554 3443  22  145666666666655431 1                   


Q ss_pred             cceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCC
Q 035693          114 FSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHA  193 (348)
Q Consensus       114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  193 (348)
                              .  .+.++++|++|++++|.+.....   ..+..+++|++|++++|.+....+..+..+++|++|++++|. 
T Consensus        55 --------~--~~~~l~~L~~L~l~~n~l~~i~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-  120 (270)
T 2o6q_A           55 --------K--AFHRLTKLRLLYLNDNKLQTLPA---GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-  120 (270)
T ss_dssp             --------T--SSSSCTTCCEEECCSSCCSCCCT---TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-
T ss_pred             --------H--HhcCCCCCCEEECCCCccCeeCh---hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-
Confidence                    1  13444555555555555444332   223445555555555555544333334444444444444442 


Q ss_pred             CCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCcc
Q 035693          194 VSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDS  273 (348)
Q Consensus       194 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~  273 (348)
                      +....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.......|..+++|++|++++|.+++..+..
T Consensus       121 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  200 (270)
T 2o6q_A          121 LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA  200 (270)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence            22222233344444444444444443222222334444444444444433322223333344444444444443222222


Q ss_pred             ccCCCCCCEEeecCCcc
Q 035693          274 IGNLENLASVDVSSCNF  290 (348)
Q Consensus       274 l~~~~~L~~L~L~~n~l  290 (348)
                      +..+++|+.|++++|++
T Consensus       201 ~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          201 FDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTTCTTCCEEECCSSCB
T ss_pred             hccccCCCEEEecCCCe
Confidence            33334444444444433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.92  E-value=3e-23  Score=191.99  Aligned_cols=256  Identities=24%  Similarity=0.293  Sum_probs=142.1

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN  128 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  128 (348)
                      .++++|++++| .+.+ +|   .+.++++|++|++++|.+++  +|...++|++|++++|.+.       .++.   +.+
T Consensus       131 ~~L~~L~L~~n-~l~~-lp---~~~~l~~L~~L~l~~N~l~~--lp~~~~~L~~L~L~~n~l~-------~l~~---~~~  193 (454)
T 1jl5_A          131 PLLEYLGVSNN-QLEK-LP---ELQNSSFLKIIDVDNNSLKK--LPDLPPSLEFIAAGNNQLE-------ELPE---LQN  193 (454)
T ss_dssp             TTCCEEECCSS-CCSS-CC---CCTTCTTCCEEECCSSCCSC--CCCCCTTCCEEECCSSCCS-------SCCC---CTT
T ss_pred             CCCCEEECcCC-CCCC-Cc---ccCCCCCCCEEECCCCcCcc--cCCCcccccEEECcCCcCC-------cCcc---ccC
Confidence            35667777766 5553 54   46777777777777777765  5555667777777777653       1332   577


Q ss_pred             CCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCC
Q 035693          129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNL  208 (348)
Q Consensus       129 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L  208 (348)
                      +++|++|++++|++.+.+.       ..++|++|++++|.+.. +| .+..+++|++|++++|....  ++.   .+++|
T Consensus       194 l~~L~~L~l~~N~l~~l~~-------~~~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~--l~~---~~~~L  259 (454)
T 1jl5_A          194 LPFLTAIYADNNSLKKLPD-------LPLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKT--LPD---LPPSL  259 (454)
T ss_dssp             CTTCCEEECCSSCCSSCCC-------CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS--CCS---CCTTC
T ss_pred             CCCCCEEECCCCcCCcCCC-------CcCcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCc--ccc---ccccc
Confidence            7788888888877765332       12467777777777764 45 36677777777777774322  221   23566


Q ss_pred             CEEEccCCcCCCcccccccCCCCccEEEccCCCCCCC--CCCC-------------CCCC-CCCcEEEcccCCCCCCCCc
Q 035693          209 TTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQG--SLPH-------------FPKN-SSLRNLNLKNTSFSGKLPD  272 (348)
Q Consensus       209 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~--~~~~-------------~~~~-~~L~~L~ls~n~~~~~~~~  272 (348)
                      ++|++++|.+.+ +|..   +++|+.|++++|.+...  .++.             +... ++|++|++++|++++ +|.
T Consensus       260 ~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~  334 (454)
T 1jl5_A          260 EALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA  334 (454)
T ss_dssp             CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC
T ss_pred             CEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccc
Confidence            677776666653 3322   24566666666554321  0000             1111 467777777777763 444


Q ss_pred             cccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCC--ccCchhhhh------------hcCCCeeecccCc
Q 035693          273 SIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSD--PIPTLRLYM------------SRNLNYLNLSSND  338 (348)
Q Consensus       273 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~~------------~~~L~~L~l~~n~  338 (348)
                      .   +++|+.|++++|.+.. +|.   .+++|++|++++|++.+  .+|..+...            +++|++|++++|+
T Consensus       335 ~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~  407 (454)
T 1jl5_A          335 L---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP  407 (454)
T ss_dssp             C---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred             c---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence            3   4677888888887775 554   35678888888888776  555443221            1567888888888


Q ss_pred             ccc--cCCCCC
Q 035693          339 LTG--GISSNI  347 (348)
Q Consensus       339 l~g--~ip~~~  347 (348)
                      ++|  .||.++
T Consensus       408 l~~~~~iP~sl  418 (454)
T 1jl5_A          408 LREFPDIPESV  418 (454)
T ss_dssp             -----------
T ss_pred             CCccccchhhH
Confidence            876  777643

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.91  E-value=1.1e-26  Score=216.13  Aligned_cols=284  Identities=20%  Similarity=0.214  Sum_probs=189.3

Q ss_pred             CEEEEeCCCCccccc----cccCCcccccccccCEEeCCCCCCCCCCC-------CCCCCCCcEEecCCCCCCCCcceee
Q 035693           50 HVIGLDLSAEPILIG----SLENASGLFSLQYLQSLNLGFTLFYGFPM-------PSSLPRLVTLDLSSREPISGFSWRL  118 (348)
Q Consensus        50 ~l~~L~ls~~~~~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-------~~~~~~L~~L~l~~~~~~~~~~~~~  118 (348)
                      ++++|++++| .+.+    .++.  .+.++++|+.|++++|.+++.+.       ....++|++|++++|.++....  .
T Consensus        86 ~L~~L~L~~n-~i~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--~  160 (461)
T 1z7x_W           86 KIQKLSLQNC-CLTGAGCGVLSS--TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC--E  160 (461)
T ss_dssp             CCCEEECTTS-CCBGGGHHHHHH--HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH--H
T ss_pred             ceeEEEccCC-CCCHHHHHHHHH--HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH--H
Confidence            5777777777 5542    3343  56677777777777777654311       1135568888887776542100  0


Q ss_pred             cCCChhhhcCCCCCcEEEccCcCCCCcchhhh-hhhC-CCCCCcEEEccCccCCCc----chHHhhhccCCCEEEcccCC
Q 035693          119 EIPNFNFFQNLTELRELYLDNVDLSGRRTEWC-KAMS-FLPNLQVLNLSNCLLSDP----INHHLANLLSLSVIRLRDNH  192 (348)
Q Consensus       119 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~  192 (348)
                      .++  ..+..+++|++|++++|.+.+...... ..+. ..++|++|++++|.+++.    ++..+..+++|++|++++|.
T Consensus       161 ~l~--~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          161 PLA--SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             HHH--HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHH--HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence            011  235667888888888888765433211 1121 356888888888888763    46667778889999988884


Q ss_pred             CCCCCh-----hhhhhcCCCCCEEEccCCcCCCc----ccccccCCCCccEEEccCCCCCCCCCCCCCC-----CCCCcE
Q 035693          193 AVSCQV-----PEFVANLLNLTTLDLSQCDLHGK----FPEKVLQVPTLETLDLSYNSLLQGSLPHFPK-----NSSLRN  258 (348)
Q Consensus       193 ~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-----~~~L~~  258 (348)
                      . ....     +..+..+++|++|++++|.++..    ++..+..+++|++|++++|.+.......+..     .++|++
T Consensus       239 l-~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~  317 (461)
T 1z7x_W          239 L-GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES  317 (461)
T ss_dssp             C-HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             C-ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence            3 3221     11223577889999998888743    5666677888999999988764433322221     368999


Q ss_pred             EEcccCCCCCC----CCccccCCCCCCEEeecCCccCCCCcccccC-----CCCCCEEeCCCCccCC----ccCchhhhh
Q 035693          259 LNLKNTSFSGK----LPDSIGNLENLASVDVSSCNFTRPIPTSMAN-----LTQLFHLDFSSNHFSD----PIPTLRLYM  325 (348)
Q Consensus       259 L~ls~n~~~~~----~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~-----~~~L~~L~l~~n~l~~----~~~~~~~~~  325 (348)
                      |++++|.+++.    ++..+..+++|++|++++|.+.+..+..+..     .++|+.|++++|++++    .++..+.. 
T Consensus       318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-  396 (461)
T 1z7x_W          318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA-  396 (461)
T ss_dssp             EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-
T ss_pred             eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh-
Confidence            99999988754    3455667789999999999888644443332     5789999999999875    44544433 


Q ss_pred             hcCCCeeecccCccccc
Q 035693          326 SRNLNYLNLSSNDLTGG  342 (348)
Q Consensus       326 ~~~L~~L~l~~n~l~g~  342 (348)
                      +++|++|++++|++++.
T Consensus       397 ~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          397 NHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             CCCCCEEECCSSSCCHH
T ss_pred             CCCccEEECCCCCCCHH
Confidence            48899999999998753

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=2.5e-25  Score=196.83  Aligned_cols=241  Identities=20%  Similarity=0.144  Sum_probs=197.5

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN  128 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  128 (348)
                      ++|++|++++| .+.+..|.  .+.++++|+.|++++|.+++..-...+++|++|++++|.+..             +..
T Consensus        34 ~~L~~L~L~~n-~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~-------------l~~   97 (317)
T 3o53_A           34 WNVKELDLSGN-PLSQISAA--DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE-------------LLV   97 (317)
T ss_dssp             GGCSEEECTTS-CCCCCCHH--HHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE-------------EEE
T ss_pred             CCCCEEECcCC-ccCcCCHH--HhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc-------------ccC
Confidence            57999999999 88766554  789999999999999999875333489999999999997531             344


Q ss_pred             CCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhh-hcCCC
Q 035693          129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFV-ANLLN  207 (348)
Q Consensus       129 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~l~~  207 (348)
                      .++|++|++++|++.....      ..+++|++|++++|.+++..+..+..+++|++|++++|.. ....+..+ ..+++
T Consensus        98 ~~~L~~L~l~~n~l~~~~~------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~l~~  170 (317)
T 3o53_A           98 GPSIETLHAANNNISRVSC------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI-DTVNFAELAASSDT  170 (317)
T ss_dssp             CTTCCEEECCSSCCSEEEE------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC-CEEEGGGGGGGTTT
T ss_pred             CCCcCEEECCCCccCCcCc------cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC-CcccHHHHhhccCc
Confidence            5899999999999987654      3468899999999999997777888999999999999954 43344444 57899


Q ss_pred             CCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecC
Q 035693          208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSS  287 (348)
Q Consensus       208 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~  287 (348)
                      |++|++++|.+... +. ...+++|++|++++|.+... .+.+..+++|++|++++|.++ .+|..+..+++|+.|++++
T Consensus       171 L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~  246 (317)
T 3o53_A          171 LEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG  246 (317)
T ss_dssp             CCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTT
T ss_pred             CCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccC
Confidence            99999999999843 33 34589999999999987644 334777899999999999998 6788888899999999999


Q ss_pred             CccC-CCCcccccCCCCCCEEeCCCCc-cCC
Q 035693          288 CNFT-RPIPTSMANLTQLFHLDFSSNH-FSD  316 (348)
Q Consensus       288 n~l~-~~~~~~l~~~~~L~~L~l~~n~-l~~  316 (348)
                      |++. +.++..+..+++|+.+++.+++ +.+
T Consensus       247 N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             CCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             CCccCcCHHHHHhccccceEEECCCchhccC
Confidence            9999 5677888888899999988543 444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.91  E-value=3.6e-22  Score=184.80  Aligned_cols=253  Identities=28%  Similarity=0.378  Sum_probs=145.1

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN  128 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  128 (348)
                      +++++|++++| .+.+ +|.  .   +++|+.|++++|.+++  ++...++|++|++++|.+.       .+|.   +.+
T Consensus        91 ~~L~~L~l~~n-~l~~-lp~--~---~~~L~~L~l~~n~l~~--l~~~~~~L~~L~L~~n~l~-------~lp~---~~~  151 (454)
T 1jl5_A           91 PHLESLVASCN-SLTE-LPE--L---PQSLKSLLVDNNNLKA--LSDLPPLLEYLGVSNNQLE-------KLPE---LQN  151 (454)
T ss_dssp             TTCSEEECCSS-CCSS-CCC--C---CTTCCEEECCSSCCSC--CCSCCTTCCEEECCSSCCS-------SCCC---CTT
T ss_pred             CCCCEEEccCC-cCCc-ccc--c---cCCCcEEECCCCccCc--ccCCCCCCCEEECcCCCCC-------CCcc---cCC
Confidence            56788888887 6654 553  1   3677777777777765  3343467777777777653       2331   566


Q ss_pred             CCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCC------------
Q 035693          129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSC------------  196 (348)
Q Consensus       129 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------  196 (348)
                      +++|++|++++|++...+.       ...+|++|++++|.+.+ +| .+..+++|++|++++|.....            
T Consensus       152 l~~L~~L~l~~N~l~~lp~-------~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l  222 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKKLPD-------LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVA  222 (454)
T ss_dssp             CTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred             CCCCCEEECCCCcCcccCC-------CcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEEC
Confidence            6777777777776654321       12356666666666555 33 355555566665555532110            


Q ss_pred             ------ChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCC--
Q 035693          197 ------QVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSG--  268 (348)
Q Consensus       197 ------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~--  268 (348)
                            .++ .+..+++|++|++++|.+.+ +|.   .+++|+.|++++|.+..  ++..  .++|++|++++|.+++  
T Consensus       223 ~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~--l~~~--~~~L~~L~ls~N~l~~l~  293 (454)
T 1jl5_A          223 GNNILEELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD--LPEL--PQSLTFLDVSENIFSGLS  293 (454)
T ss_dssp             CSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC--CCCC--CTTCCEEECCSSCCSEES
T ss_pred             cCCcCCccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc--cCcc--cCcCCEEECcCCccCccc
Confidence                  122 13444445555555544442 222   12445555555554322  1111  2456666666666553  


Q ss_pred             CCCccc-------------cCC-CCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeec
Q 035693          269 KLPDSI-------------GNL-ENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNL  334 (348)
Q Consensus       269 ~~~~~l-------------~~~-~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l  334 (348)
                      .+|..+             ... ++|++|++++|++.+ +|..   +++|+.|++++|++.+ +|.    .+++|++|++
T Consensus       294 ~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~----~l~~L~~L~L  364 (454)
T 1jl5_A          294 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE----LPQNLKQLHV  364 (454)
T ss_dssp             CCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC----CCTTCCEEEC
T ss_pred             CcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc----hhhhccEEEC
Confidence            222111             112 467777777777766 4433   4678888888888875 665    2478999999


Q ss_pred             ccCcccc--cCCCCC
Q 035693          335 SSNDLTG--GISSNI  347 (348)
Q Consensus       335 ~~n~l~g--~ip~~~  347 (348)
                      ++|+++|  .+|.++
T Consensus       365 ~~N~l~~l~~ip~~l  379 (454)
T 1jl5_A          365 EYNPLREFPDIPESV  379 (454)
T ss_dssp             CSSCCSSCCCCCTTC
T ss_pred             CCCCCCcCCCChHHH
Confidence            9999998  788764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=1.3e-24  Score=193.70  Aligned_cols=211  Identities=24%  Similarity=0.265  Sum_probs=129.6

Q ss_pred             CCccccceEeCCCCCEEEEeCCCCccccccccCCcccccc--cccCEEeCCCCCCCCCCCCC--CCCCCcEEecCCCCCC
Q 035693           36 DCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSL--QYLQSLNLGFTLFYGFPMPS--SLPRLVTLDLSSREPI  111 (348)
Q Consensus        36 ~~~~~~~~~c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~  111 (348)
                      -|.+|.++.+++ ..++.++++++ .+.   +.  .+..+  ++++.|++++|.+.+. .+.  .+++|++|++++|.+.
T Consensus        35 vc~~W~~~~~~~-~~~~~l~l~~~-~~~---~~--~~~~~~~~~l~~L~l~~n~l~~~-~~~~~~~~~L~~L~L~~~~l~  106 (336)
T 2ast_B           35 VCKRWYRLASDE-SLWQTLDLTGK-NLH---PD--VTGRLLSQGVIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSVIE  106 (336)
T ss_dssp             SCHHHHHHHTCS-TTSSEEECTTC-BCC---HH--HHHHHHHTTCSEEECTTCEECSC-CCSCCCCBCCCEEECTTCEEC
T ss_pred             HHHHHHHHhcCc-hhheeeccccc-cCC---HH--HHHhhhhccceEEEcCCcccccc-chhhccCCCCCEEEccCCCcC
Confidence            345798888764 45789999988 554   22  56666  8999999999888775 333  6677777777777542


Q ss_pred             CCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCc-cCCCc-chHHhhhccCCCEEEcc
Q 035693          112 SGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNC-LLSDP-INHHLANLLSLSVIRLR  189 (348)
Q Consensus       112 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~  189 (348)
                      .     ..++..  +..+++|++|++++|.+++..+   ..+..+++|++|++++| .+++. ++..+..+++|++|+++
T Consensus       107 ~-----~~~~~~--~~~~~~L~~L~L~~~~l~~~~~---~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~  176 (336)
T 2ast_B          107 V-----STLHGI--LSQCSKLQNLSLEGLRLSDPIV---NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS  176 (336)
T ss_dssp             H-----HHHHHH--HTTBCCCSEEECTTCBCCHHHH---HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred             H-----HHHHHH--HhhCCCCCEEeCcCcccCHHHH---HHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence            1     012222  6667777777777776654332   45666777777777777 45542 45556667777777777


Q ss_pred             cC-CCCCCChhhhhhcCC-CCCEEEccCC--cCC-CcccccccCCCCccEEEccCCC-CCCCCCCCCCCCCCCcEEEccc
Q 035693          190 DN-HAVSCQVPEFVANLL-NLTTLDLSQC--DLH-GKFPEKVLQVPTLETLDLSYNS-LLQGSLPHFPKNSSLRNLNLKN  263 (348)
Q Consensus       190 ~~-~~~~~~~~~~l~~l~-~L~~L~l~~~--~~~-~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~ls~  263 (348)
                      +| ......++..+..++ +|++|++++|  .++ ..++..+..+++|++|++++|. +....+..+..+++|++|++++
T Consensus       177 ~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~  256 (336)
T 2ast_B          177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR  256 (336)
T ss_dssp             CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence            76 332222455566677 7777777776  333 2344445556666666666665 3333333444444555555555


Q ss_pred             C
Q 035693          264 T  264 (348)
Q Consensus       264 n  264 (348)
                      |
T Consensus       257 ~  257 (336)
T 2ast_B          257 C  257 (336)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.90  E-value=1.7e-25  Score=208.02  Aligned_cols=212  Identities=21%  Similarity=0.195  Sum_probs=109.3

Q ss_pred             CCCcEEEccCcCCCCcch-hhhhhhCCCCCCcEEEccCccCCCcchHHhhh-----ccCCCEEEcccCCCCCC---Chhh
Q 035693          130 TELRELYLDNVDLSGRRT-EWCKAMSFLPNLQVLNLSNCLLSDPINHHLAN-----LLSLSVIRLRDNHAVSC---QVPE  200 (348)
Q Consensus       130 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~---~~~~  200 (348)
                      ++|++|++++|++++... .+...+..+++|++|++++|.+.+..+..+..     .++|++|++++|.....   .++.
T Consensus       142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  221 (461)
T 1z7x_W          142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG  221 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred             CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence            345555555555543321 11223344555555555555554432222221     33566666655532221   1344


Q ss_pred             hhhcCCCCCEEEccCCcCCCcc-----cccccCCCCccEEEccCCCCCCCCC----CCCCCCCCCcEEEcccCCCCCCCC
Q 035693          201 FVANLLNLTTLDLSQCDLHGKF-----PEKVLQVPTLETLDLSYNSLLQGSL----PHFPKNSSLRNLNLKNTSFSGKLP  271 (348)
Q Consensus       201 ~l~~l~~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~ls~n~~~~~~~  271 (348)
                      .+..+++|++|++++|.+.+..     +..+..+++|++|++++|.+.....    ..+..+++|++|++++|.+.+..+
T Consensus       222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  301 (461)
T 1z7x_W          222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA  301 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred             HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence            4555566666666666554321     1112235566666666665543321    122225666666666666543222


Q ss_pred             cccc-----CCCCCCEEeecCCccCCC----CcccccCCCCCCEEeCCCCccCCccCchhhhh----hcCCCeeecccCc
Q 035693          272 DSIG-----NLENLASVDVSSCNFTRP----IPTSMANLTQLFHLDFSSNHFSDPIPTLRLYM----SRNLNYLNLSSND  338 (348)
Q Consensus       272 ~~l~-----~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~l~~n~  338 (348)
                      ..+.     ..++|++|++++|.+++.    ++..+..+++|+.|++++|++.+..+..+...    .++|++|++++|.
T Consensus       302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  381 (461)
T 1z7x_W          302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD  381 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence            2221     124677777777776653    34445556778888888887766444333321    3578888888888


Q ss_pred             ccc
Q 035693          339 LTG  341 (348)
Q Consensus       339 l~g  341 (348)
                      +++
T Consensus       382 i~~  384 (461)
T 1z7x_W          382 VSD  384 (461)
T ss_dssp             CCH
T ss_pred             CCh
Confidence            775

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=8.3e-24  Score=197.56  Aligned_cols=235  Identities=17%  Similarity=0.163  Sum_probs=174.2

Q ss_pred             ccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhh
Q 035693           73 FSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEW  149 (348)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  149 (348)
                      ..+++|+.|++++|.+++. .+.   .+++|++|++++|.++.      ..+    +..+++|++|++++|.+++.++  
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~------~~~----l~~l~~L~~L~Ls~N~l~~l~~--   97 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYE------TLD----LESLSTLRTLDLNNNYVQELLV--   97 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEE------EEE----CTTCTTCCEEECCSSEEEEEEE--
T ss_pred             ccCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCC------Ccc----cccCCCCCEEEecCCcCCCCCC--
Confidence            3555788888888888775 222   77888888888887631      111    5678888888888888765432  


Q ss_pred             hhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCccccccc-C
Q 035693          150 CKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVL-Q  228 (348)
Q Consensus       150 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-~  228 (348)
                            .++|++|++++|.+.+..+.   .+++|+.|++++| .+....+..+..+++|++|++++|.+.+..|..+. .
T Consensus        98 ------~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~  167 (487)
T 3oja_A           98 ------GPSIETLHAANNNISRVSCS---RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS  167 (487)
T ss_dssp             ------CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred             ------CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhh
Confidence                  37888888888888875443   3578888888888 44555566777888888899988888876666665 6


Q ss_pred             CCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEe
Q 035693          229 VPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLD  308 (348)
Q Consensus       229 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~  308 (348)
                      +++|+.|++++|.+...  +....+++|++|++++|.+++ +|..+..+++|+.|++++|.+.+ +|..+..+++|+.|+
T Consensus       168 l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~  243 (487)
T 3oja_A          168 SDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFD  243 (487)
T ss_dssp             TTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEE
T ss_pred             CCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEE
Confidence            78899999998887543  444457889999999999884 55567888899999999999987 777788888999999


Q ss_pred             CCCCccC-CccCchhhhhhcCCCeeecc
Q 035693          309 FSSNHFS-DPIPTLRLYMSRNLNYLNLS  335 (348)
Q Consensus       309 l~~n~l~-~~~~~~~~~~~~~L~~L~l~  335 (348)
                      +++|++. +.+|..+. .++.|+.++++
T Consensus       244 l~~N~l~c~~~~~~~~-~l~~L~~l~~~  270 (487)
T 3oja_A          244 LRGNGFHCGTLRDFFS-KNQRVQTVAKQ  270 (487)
T ss_dssp             CTTCCBCHHHHHHHHT-TCHHHHHHHHH
T ss_pred             cCCCCCcCcchHHHHH-hCCCCcEEecc
Confidence            9999987 33443333 33566666665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=4.1e-23  Score=178.90  Aligned_cols=224  Identities=19%  Similarity=0.175  Sum_probs=174.5

Q ss_pred             EeCCCCCCCCCCCCCC-CCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCC
Q 035693           81 LNLGFTLFYGFPMPSS-LPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNL  159 (348)
Q Consensus        81 L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L  159 (348)
                      ++..+..+..  +|.. .++|++|++++|.++.      ..+..  +.++++|++|++++|++....+   ..+..+++|
T Consensus        12 ~~c~~~~l~~--ip~~l~~~l~~L~ls~n~l~~------~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L   78 (276)
T 2z62_A           12 YQCMELNFYK--IPDNLPFSTKNLDLSFNPLRH------LGSYS--FFSFPELQVLDLSRCEIQTIED---GAYQSLSHL   78 (276)
T ss_dssp             EECTTSCCSS--CCSSSCTTCCEEECTTCCCCE------ECTTT--TTTCTTCSEEECTTCCCCEECT---TTTTTCTTC
T ss_pred             EEecCCCccc--cCCCCCCCccEEECCCCcccc------cCHhH--hccccCCcEEECCCCcCCccCH---HHccCCcCC
Confidence            3444444444  4553 3579999999998742      22223  7889999999999999987665   467889999


Q ss_pred             cEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCC-cccccccCCCCccEEEcc
Q 035693          160 QVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHG-KFPEKVLQVPTLETLDLS  238 (348)
Q Consensus       160 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~  238 (348)
                      ++|++++|.+.+..+..+..+++|++|++++|. .....+..+..+++|++|++++|.+.. .+|..+..+++|++|+++
T Consensus        79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls  157 (276)
T 2z62_A           79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  157 (276)
T ss_dssp             CEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred             CEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence            999999999998777889999999999999984 443444467889999999999999875 368889999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCc----EEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCcc
Q 035693          239 YNSLLQGSLPHFPKNSSLR----NLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHF  314 (348)
Q Consensus       239 ~~~l~~~~~~~~~~~~~L~----~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l  314 (348)
                      +|.+.......+..++.|+    +|++++|.+.+..+..+ ...+|++|++++|.+.+..+..+..+++|+.|++++|++
T Consensus       158 ~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             SSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             CCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence            9988665555555545555    89999999984434333 345899999999999986666678899999999999999


Q ss_pred             CCccC
Q 035693          315 SDPIP  319 (348)
Q Consensus       315 ~~~~~  319 (348)
                      .+..+
T Consensus       237 ~c~c~  241 (276)
T 2z62_A          237 DCSCP  241 (276)
T ss_dssp             CCCTT
T ss_pred             cccCC
Confidence            88654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=2.1e-23  Score=180.36  Aligned_cols=227  Identities=21%  Similarity=0.150  Sum_probs=154.6

Q ss_pred             ccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhC
Q 035693           75 LQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS  154 (348)
Q Consensus        75 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  154 (348)
                      +..+..+++..+.+.+......+++|++|++++|.+..       ++   .+..+++|++|++++|.+.+.     ..+.
T Consensus        18 ~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-------~~---~l~~l~~L~~L~l~~n~l~~~-----~~l~   82 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKS-------VQ---GIQYLPNVRYLALGGNKLHDI-----SALK   82 (272)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCC-------CT---TGGGCTTCCEEECTTSCCCCC-----GGGT
T ss_pred             HHHHHHHHhcCcccccccccccccceeeeeeCCCCccc-------cc---ccccCCCCcEEECCCCCCCCc-----hhhc
Confidence            34444555555555543112266677777777665421       11   256677777777777777653     2466


Q ss_pred             CCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccE
Q 035693          155 FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLET  234 (348)
Q Consensus       155 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  234 (348)
                      .+++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++|+.
T Consensus        83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  161 (272)
T 3rfs_A           83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE  161 (272)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCE
Confidence            77778888888877777666666777788888888773 44444555677778888888888777555555677788888


Q ss_pred             EEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCcc
Q 035693          235 LDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHF  314 (348)
Q Consensus       235 L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l  314 (348)
                      |++++|.+.......+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+       .++.|+.++++.|.+
T Consensus       162 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~  234 (272)
T 3rfs_A          162 LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKH  234 (272)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHT
T ss_pred             EECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhC
Confidence            8888887765555556677888888888888876666667777888888888887754       345677888888888


Q ss_pred             CCccCchhhh
Q 035693          315 SDPIPTLRLY  324 (348)
Q Consensus       315 ~~~~~~~~~~  324 (348)
                      .|.+|..+..
T Consensus       235 ~g~ip~~~~~  244 (272)
T 3rfs_A          235 SGVVRNSAGS  244 (272)
T ss_dssp             GGGBBCTTSC
T ss_pred             CCcccCcccc
Confidence            8777766543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=1.1e-22  Score=176.13  Aligned_cols=206  Identities=24%  Similarity=0.266  Sum_probs=162.2

Q ss_pred             cccCEEeCCCCCCCCCCC--CCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhh
Q 035693           76 QYLQSLNLGFTLFYGFPM--PSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAM  153 (348)
Q Consensus        76 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  153 (348)
                      ++|+.|++++|.+++...  ...+++|++|++++|.+..      ..+..  +.++++|++|++++|++....+   ..+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~   96 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------IEDGA--YQSLSHLSTLILTGNPIQSLAL---GAF   96 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE------ECTTT--TTTCTTCCEEECTTCCCCEECT---TTT
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc------cCHHH--ccCCcCCCEEECCCCccCccCh---hhh
Confidence            579999999999987632  1278999999999998642      22223  7889999999999999887665   467


Q ss_pred             CCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCcc
Q 035693          154 SFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLE  233 (348)
Q Consensus       154 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~  233 (348)
                      ..+++|++|++++|.+.+..+..+..+++|++|++++|......++..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  176 (276)
T 2z62_A           97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP  176 (276)
T ss_dssp             TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred             cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence            88999999999999988866657888999999999999554434678889999999999999998865555565555555


Q ss_pred             ----EEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCC
Q 035693          234 ----TLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRP  293 (348)
Q Consensus       234 ----~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~  293 (348)
                          +|++++|.+.......+. ..+|++|++++|.+++..+..+..+++|+.|++++|++...
T Consensus       177 ~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          177 LLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             TCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             ccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence                899999987654444443 34899999999999865555678889999999999999863

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=6.1e-24  Score=198.48  Aligned_cols=235  Identities=20%  Similarity=0.148  Sum_probs=194.5

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN  128 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  128 (348)
                      ++|++|+|++| .+.+..|.  .+..+++|+.|++++|.+++..-...+++|++|++++|.++.             +..
T Consensus        34 ~~L~~L~Ls~n-~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-------------l~~   97 (487)
T 3oja_A           34 WNVKELDLSGN-PLSQISAA--DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE-------------LLV   97 (487)
T ss_dssp             GGCCEEECCSS-CCCCCCGG--GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE-------------EEE
T ss_pred             CCccEEEeeCC-cCCCCCHH--HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC-------------CCC
Confidence            48999999999 88776655  789999999999999999875333489999999999997531             334


Q ss_pred             CCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhh-cCCC
Q 035693          129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVA-NLLN  207 (348)
Q Consensus       129 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~l~~  207 (348)
                      .++|+.|++++|.+.....      ..+++|++|++++|.+++..+..+..+++|+.|++++|. +.+..+..+. .+++
T Consensus        98 ~~~L~~L~L~~N~l~~~~~------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~  170 (487)
T 3oja_A           98 GPSIETLHAANNNISRVSC------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDT  170 (487)
T ss_dssp             CTTCCEEECCSSCCCCEEE------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTT
T ss_pred             CCCcCEEECcCCcCCCCCc------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCc
Confidence            5899999999999987654      346899999999999999878888999999999999994 4544555554 7899


Q ss_pred             CCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecC
Q 035693          208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSS  287 (348)
Q Consensus       208 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~  287 (348)
                      |++|++++|.+.+. + ....+++|+.|++++|.+... ++.+..+++|+.|++++|.++ .+|..+..+++|+.|++++
T Consensus       171 L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~  246 (487)
T 3oja_A          171 LEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG  246 (487)
T ss_dssp             CCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTT
T ss_pred             ccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCC
Confidence            99999999999854 3 244689999999999987643 344777899999999999998 5787888899999999999


Q ss_pred             CccC-CCCcccccCCCCCCEEeCC
Q 035693          288 CNFT-RPIPTSMANLTQLFHLDFS  310 (348)
Q Consensus       288 n~l~-~~~~~~l~~~~~L~~L~l~  310 (348)
                      |.+. +.+|..+..++.|+.+++.
T Consensus       247 N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          247 NGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCcCcchHHHHHhCCCCcEEecc
Confidence            9998 4566777777777777775

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=9.4e-22  Score=169.79  Aligned_cols=185  Identities=23%  Similarity=0.280  Sum_probs=157.5

Q ss_pred             CCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCC
Q 035693          130 TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLT  209 (348)
Q Consensus       130 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  209 (348)
                      ++|+.|++++|++....+   ..+..+++|++|++++|.++...+..+..+++|++|++++|. +....+..+..+++|+
T Consensus        37 ~~l~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~  112 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPS---KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLA  112 (270)
T ss_dssp             TTCSEEECCSSCCSCCCT---TSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCC
T ss_pred             CCCCEEECcCCCCCeeCH---HHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCC
Confidence            467888888888776654   467889999999999999988666677889999999999994 4445556778899999


Q ss_pred             EEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCc
Q 035693          210 TLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCN  289 (348)
Q Consensus       210 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~  289 (348)
                      +|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus       113 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ  192 (270)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence            99999999987666778899999999999999876666668889999999999999986666678889999999999999


Q ss_pred             cCCCCcccccCCCCCCEEeCCCCccCCcc
Q 035693          290 FTRPIPTSMANLTQLFHLDFSSNHFSDPI  318 (348)
Q Consensus       290 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~  318 (348)
                      +....+..+..+++|+.|++++|++.+..
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          193 LKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             CCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            99866667888999999999999987654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=2.8e-24  Score=195.34  Aligned_cols=264  Identities=17%  Similarity=0.124  Sum_probs=171.7

Q ss_pred             ccccccccCEEeCCCCCCCCCCC------CCCCCCCcEEecCCCCCCCCcceeecCCCh-----hhhcCCCCCcEEEccC
Q 035693           71 GLFSLQYLQSLNLGFTLFYGFPM------PSSLPRLVTLDLSSREPISGFSWRLEIPNF-----NFFQNLTELRELYLDN  139 (348)
Q Consensus        71 ~l~~~~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-----~~~~~l~~L~~L~l~~  139 (348)
                      .+..+++|+.|++++|.+++...      ...+++|++|++++|.+...   ...+|..     ..+..+++|++|++++
T Consensus        27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l---~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRV---KDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSC---GGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCcc---ccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            67788999999999998876421      22688888998888754211   1122221     2246778888888888


Q ss_pred             cCCCCcchh-hhhhhCCCCCCcEEEccCccCCCcchH----Hhhhc---------cCCCEEEcccCCCCCCChh---hhh
Q 035693          140 VDLSGRRTE-WCKAMSFLPNLQVLNLSNCLLSDPINH----HLANL---------LSLSVIRLRDNHAVSCQVP---EFV  202 (348)
Q Consensus       140 ~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~---------~~L~~L~l~~~~~~~~~~~---~~l  202 (348)
                      |.+...... ++..+..+++|++|++++|.+....+.    .+..+         ++|++|++++|.......+   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            888764332 334567788888888888887643333    33344         7888888888854333344   456


Q ss_pred             hcCCCCCEEEccCCcCCC-----cccccccCCCCccEEEccCCCCCC----CCCCCCCCCCCCcEEEcccCCCCCC----
Q 035693          203 ANLLNLTTLDLSQCDLHG-----KFPEKVLQVPTLETLDLSYNSLLQ----GSLPHFPKNSSLRNLNLKNTSFSGK----  269 (348)
Q Consensus       203 ~~l~~L~~L~l~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~l~~----~~~~~~~~~~~L~~L~ls~n~~~~~----  269 (348)
                      ..+++|++|++++|.+..     ..+..+..+++|+.|++++|.+..    ..+..+..+++|++|++++|.+++.    
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence            677888888888887762     223356677888888888887642    1123345567788888888877643    


Q ss_pred             CCcccc--CCCCCCEEeecCCccCC----CCcccc-cCCCCCCEEeCCCCccCCccC--chhhhhhcCCCeeecccC
Q 035693          270 LPDSIG--NLENLASVDVSSCNFTR----PIPTSM-ANLTQLFHLDFSSNHFSDPIP--TLRLYMSRNLNYLNLSSN  337 (348)
Q Consensus       270 ~~~~l~--~~~~L~~L~L~~n~l~~----~~~~~l-~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~L~~L~l~~n  337 (348)
                      ++..+.  .+++|++|++++|.+..    .+|..+ .++++|+.|++++|++.+..+  ..+...+++++.+++...
T Consensus       264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~  340 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL  340 (386)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred             HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence            344442  36778888888888776    355555 446788888888888876553  334444455555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=7.7e-22  Score=171.97  Aligned_cols=203  Identities=19%  Similarity=0.156  Sum_probs=159.9

Q ss_pred             CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchH
Q 035693           96 SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINH  175 (348)
Q Consensus        96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  175 (348)
                      .+++|++++++++.++       .+|..  +  .+.++.|++++|.+....+   ..+..+++|++|++++|.++...+.
T Consensus         8 ~l~~l~~l~~~~~~l~-------~ip~~--~--~~~l~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~   73 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLT-------ALPPD--L--PKDTTILHLSENLLYTFSL---ATLMPYTRLTQLNLDRAELTKLQVD   73 (290)
T ss_dssp             CSTTCCEEECTTSCCS-------SCCSC--C--CTTCCEEECTTSCCSEEEG---GGGTTCTTCCEEECTTSCCCEEECC
T ss_pred             ccCCccEEECCCCCCC-------cCCCC--C--CCCCCEEEcCCCcCCccCH---HHhhcCCCCCEEECCCCccCcccCC
Confidence            5678999999988764       33432  2  2578999999999887665   5678889999999999988874332


Q ss_pred             HhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCC
Q 035693          176 HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSS  255 (348)
Q Consensus       176 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  255 (348)
                        ..+++|++|++++|...  .++..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.......|..+++
T Consensus        74 --~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  149 (290)
T 1p9a_G           74 --GTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK  149 (290)
T ss_dssp             --SCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             --CCCCcCCEEECCCCcCC--cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence              67788999999988543  45666778889999999999888655567888899999999999887666666777889


Q ss_pred             CcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCc
Q 035693          256 LRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDP  317 (348)
Q Consensus       256 L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~  317 (348)
                      |+.|++++|++++..+..+..+++|+.|++++|.+.. +|..+...++|+.+++++|++.+.
T Consensus       150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccCc
Confidence            9999999999885545566778899999999999986 677777778899999999988764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=6.6e-21  Score=166.05  Aligned_cols=204  Identities=20%  Similarity=0.159  Sum_probs=172.6

Q ss_pred             ccccccccCEEeCCCCCCCCCCCCC-CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhh
Q 035693           71 GLFSLQYLQSLNLGFTLFYGFPMPS-SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEW  149 (348)
Q Consensus        71 ~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  149 (348)
                      .+.++++++.++++++.++.  +|. -.+++++|++++|.+..      ..+.  .+.++++|+.|++++|.++....  
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~--ip~~~~~~l~~L~L~~N~l~~------~~~~--~~~~l~~L~~L~L~~n~l~~~~~--   72 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTA--LPPDLPKDTTILHLSENLLYT------FSLA--TLMPYTRLTQLNLDRAELTKLQV--   72 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSS--CCSCCCTTCCEEECTTSCCSE------EEGG--GGTTCTTCCEEECTTSCCCEEEC--
T ss_pred             cccccCCccEEECCCCCCCc--CCCCCCCCCCEEEcCCCcCCc------cCHH--HhhcCCCCCEEECCCCccCcccC--
Confidence            46789999999999999987  454 45789999999998742      2233  37889999999999999987654  


Q ss_pred             hhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCC
Q 035693          150 CKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQV  229 (348)
Q Consensus       150 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~  229 (348)
                         ...+++|++|++++|.+.. +|..+..+++|++|++++|+ ++...+..|..+++|++|++++|.+....+..+..+
T Consensus        73 ---~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  147 (290)
T 1p9a_G           73 ---DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT  147 (290)
T ss_dssp             ---CSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             ---CCCCCcCCEEECCCCcCCc-CchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccc
Confidence               3788999999999999986 67778889999999999994 454555778899999999999999986656667889


Q ss_pred             CCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCC
Q 035693          230 PTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR  292 (348)
Q Consensus       230 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~  292 (348)
                      ++|+.|++++|++.......+..+++|++|++++|+++ .+|..+....+|+.+++++|++..
T Consensus       148 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            99999999999987666666778999999999999998 778877778899999999999874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=2.1e-22  Score=177.40  Aligned_cols=201  Identities=21%  Similarity=0.228  Sum_probs=94.9

Q ss_pred             CCcEEEccCcCCCCcchhhhhhh--CCCCCCcEEEccCccCCCcch----HHhhhccCCCEEEcccCCCCCCChhhhhhc
Q 035693          131 ELRELYLDNVDLSGRRTEWCKAM--SFLPNLQVLNLSNCLLSDPIN----HHLANLLSLSVIRLRDNHAVSCQVPEFVAN  204 (348)
Q Consensus       131 ~L~~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~  204 (348)
                      +|++|++++|.+.+..+   ..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|. +....+..+..
T Consensus        92 ~L~~L~l~~n~l~~~~~---~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~  167 (310)
T 4glp_A           92 RLKELTLEDLKITGTMP---PLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRA  167 (310)
T ss_dssp             CCCEEEEESCCCBSCCC---CCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCC
T ss_pred             ceeEEEeeCCEeccchh---hhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhcc
Confidence            35555555554443332   122  344455555555554443211    222334455555555552 22233344445


Q ss_pred             CCCCCEEEccCCcCCCc--cc--ccccCCCCccEEEccCCCCCCCCC--C-CCCCCCCCcEEEcccCCCCCCCCccccCC
Q 035693          205 LLNLTTLDLSQCDLHGK--FP--EKVLQVPTLETLDLSYNSLLQGSL--P-HFPKNSSLRNLNLKNTSFSGKLPDSIGNL  277 (348)
Q Consensus       205 l~~L~~L~l~~~~~~~~--~~--~~l~~~~~L~~L~l~~~~l~~~~~--~-~~~~~~~L~~L~ls~n~~~~~~~~~l~~~  277 (348)
                      +++|++|++++|.+.+.  .+  ..+..+++|++|++++|.+.....  . .+..+++|++|++++|.+.+..|..+..+
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  247 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC  247 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred             CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence            55555555555544321  11  112344555555555554421100  0 01234556666666666554444444433


Q ss_pred             ---CCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccc
Q 035693          278 ---ENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG  341 (348)
Q Consensus       278 ---~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g  341 (348)
                         ++|++|++++|++.. +|..+.  ++|+.|++++|++.+ +|.  ...+++|++|++++|++++
T Consensus       248 ~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~-~~~--~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          248 MWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNR-APQ--PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCS-CCC--TTSCCCCSCEECSSTTTSC
T ss_pred             cCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCC-Cch--hhhCCCccEEECcCCCCCC
Confidence               466666666666664 444432  566666666666655 232  1233666666666666653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=5.9e-23  Score=186.55  Aligned_cols=258  Identities=17%  Similarity=0.176  Sum_probs=184.6

Q ss_pred             CCEEEEeCCCCccccccccCC--cccccccccCEEeCCCCCCCCCC--CC----------CCCCCCcEEecCCCCCCCCc
Q 035693           49 GHVIGLDLSAEPILIGSLENA--SGLFSLQYLQSLNLGFTLFYGFP--MP----------SSLPRLVTLDLSSREPISGF  114 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~--~~----------~~~~~L~~L~l~~~~~~~~~  114 (348)
                      ++|++|+|++| .+.+..+..  ..+.++++|+.|++++|.+....  +|          ..+++|++|++++|.+....
T Consensus        32 ~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           32 DSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             SCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            57999999999 776543320  14678999999999987554321  23          27899999999999875311


Q ss_pred             ceeecCCChhhhcCCCCCcEEEccCcCCCCcchh-hhhhhCCC---------CCCcEEEccCccCCC-cch---HHhhhc
Q 035693          115 SWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTE-WCKAMSFL---------PNLQVLNLSNCLLSD-PIN---HHLANL  180 (348)
Q Consensus       115 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~---------~~L~~L~l~~~~~~~-~~~---~~~~~~  180 (348)
                      .  ..++  ..+..+++|++|++++|.++...+. +...+..+         ++|++|++++|.++. .++   ..+..+
T Consensus       111 ~--~~l~--~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  186 (386)
T 2ca6_A          111 Q--EPLI--DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  186 (386)
T ss_dssp             H--HHHH--HHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             H--HHHH--HHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence            0  0122  2378899999999999998654432 22234444         899999999999973 344   467788


Q ss_pred             cCCCEEEcccCCCCCCC---hhh-hhhcCCCCCEEEccCCcCC----CcccccccCCCCccEEEccCCCCCCCCC----C
Q 035693          181 LSLSVIRLRDNHAVSCQ---VPE-FVANLLNLTTLDLSQCDLH----GKFPEKVLQVPTLETLDLSYNSLLQGSL----P  248 (348)
Q Consensus       181 ~~L~~L~l~~~~~~~~~---~~~-~l~~l~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~l~~~~~----~  248 (348)
                      ++|++|++++|.+....   +.. .+..+++|++|++++|.+.    ..++..+..+++|+.|++++|.+.....    .
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  266 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  266 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence            99999999999543211   223 6778999999999999985    4677788899999999999998755422    2


Q ss_pred             CC--CCCCCCcEEEcccCCCCC----CCCccc-cCCCCCCEEeecCCccCCCCc--ccc-cCCCCCCEEeCCC
Q 035693          249 HF--PKNSSLRNLNLKNTSFSG----KLPDSI-GNLENLASVDVSSCNFTRPIP--TSM-ANLTQLFHLDFSS  311 (348)
Q Consensus       249 ~~--~~~~~L~~L~ls~n~~~~----~~~~~l-~~~~~L~~L~L~~n~l~~~~~--~~l-~~~~~L~~L~l~~  311 (348)
                      .+  ..+++|++|++++|.+++    .++..+ ..+++|+.|++++|.+.+..+  ..+ ..+++++.+.+..
T Consensus       267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~  339 (386)
T 2ca6_A          267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE  339 (386)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred             HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence            23  337899999999999985    366666 567999999999999997553  222 2234444444444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=4.9e-22  Score=175.08  Aligned_cols=229  Identities=21%  Similarity=0.247  Sum_probs=177.1

Q ss_pred             cccccCEEeCCCCCCCCCCCCC-----CCCCCcEEecCCCCCCCCcceeecCCChhhh--cCCCCCcEEEccCcCCCCcc
Q 035693           74 SLQYLQSLNLGFTLFYGFPMPS-----SLPRLVTLDLSSREPISGFSWRLEIPNFNFF--QNLTELRELYLDNVDLSGRR  146 (348)
Q Consensus        74 ~~~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~  146 (348)
                      +...++.+.+.+..++...+..     .+++|++|++++|.+..      ..+..  +  ..+++|++|++++|.+....
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~--~~~~~~~~L~~L~Ls~n~i~~~~  133 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITG------TMPPL--PLEATGLALSSLRLRNVSWATGR  133 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBS------CCCCC--SSSCCCBCCSSCEEESCCCSSTT
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEecc------chhhh--hhhccCCCCCEEEeecccccchh
Confidence            3445788888887765532222     56779999999998742      33333  4  78999999999999998754


Q ss_pred             hhhh-hhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCC-h--hhhhhcCCCCCEEEccCCcCCCcc
Q 035693          147 TEWC-KAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQ-V--PEFVANLLNLTTLDLSQCDLHGKF  222 (348)
Q Consensus       147 ~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~--~~~l~~l~~L~~L~l~~~~~~~~~  222 (348)
                      +... ..+..+++|++|++++|.+.+..+..+..+++|++|++++|+..... .  ...+..+++|++|++++|.++ .+
T Consensus       134 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l  212 (310)
T 4glp_A          134 SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TP  212 (310)
T ss_dssp             SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CH
T ss_pred             hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-ch
Confidence            3221 34567899999999999999878888999999999999999543211 1  122467889999999999987 33


Q ss_pred             cc----cccCCCCccEEEccCCCCCCCCCCCCCCC---CCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCc
Q 035693          223 PE----KVLQVPTLETLDLSYNSLLQGSLPHFPKN---SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIP  295 (348)
Q Consensus       223 ~~----~l~~~~~L~~L~l~~~~l~~~~~~~~~~~---~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~  295 (348)
                      +.    .+..+++|++|++++|.+....++.+..+   ++|++|++++|+++ .+|..+.  ++|++|++++|++.+ +|
T Consensus       213 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~  288 (310)
T 4glp_A          213 TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-AP  288 (310)
T ss_dssp             HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CC
T ss_pred             HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cc
Confidence            33    24678999999999999876655555554   79999999999999 6777664  799999999999998 34


Q ss_pred             ccccCCCCCCEEeCCCCccCC
Q 035693          296 TSMANLTQLFHLDFSSNHFSD  316 (348)
Q Consensus       296 ~~l~~~~~L~~L~l~~n~l~~  316 (348)
                      . +..+++|+.|++++|++++
T Consensus       289 ~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          289 Q-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             C-TTSCCCCSCEECSSTTTSC
T ss_pred             h-hhhCCCccEEECcCCCCCC
Confidence            3 5778999999999999976

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=9.4e-21  Score=166.61  Aligned_cols=213  Identities=19%  Similarity=0.239  Sum_probs=167.7

Q ss_pred             cccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCC
Q 035693           76 QYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSF  155 (348)
Q Consensus        76 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  155 (348)
                      ..+..+.+..+.+.+......+++|++|++++|.+.       .++   .+..+++|++|++++|.+.+..+     +..
T Consensus        19 ~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-------~l~---~~~~l~~L~~L~L~~n~i~~~~~-----~~~   83 (308)
T 1h6u_A           19 ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-------TIE---GVQYLNNLIGLELKDNQITDLAP-----LKN   83 (308)
T ss_dssp             HHHHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCC-------CCT---TGGGCTTCCEEECCSSCCCCCGG-----GTT
T ss_pred             HHHHHHHhCCCCcCceecHHHcCCcCEEEeeCCCcc-------Cch---hhhccCCCCEEEccCCcCCCChh-----Hcc
Confidence            334444566666666412227899999999999764       233   27889999999999999887553     788


Q ss_pred             CCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEE
Q 035693          156 LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETL  235 (348)
Q Consensus       156 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  235 (348)
                      +++|++|++++|.+.+. + .+..+++|++|++++|.. .. ++ .+..+++|++|++++|.+.+. +. +..+++|+.|
T Consensus        84 l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l-~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L  156 (308)
T 1h6u_A           84 LTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQI-TD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYL  156 (308)
T ss_dssp             CCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCC-CC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEE
T ss_pred             CCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCC-CC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEE
Confidence            99999999999998873 3 688899999999999954 33 22 378899999999999998743 33 7788999999


Q ss_pred             EccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccC
Q 035693          236 DLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFS  315 (348)
Q Consensus       236 ~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~  315 (348)
                      ++++|.+..  .+.+..+++|+.|++++|.+++ ++. +..+++|++|++++|++.+..  .+..+++|+.|++++|++.
T Consensus       157 ~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          157 SIGNAQVSD--LTPLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             ECCSSCCCC--CGGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             EccCCcCCC--ChhhcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            999998754  3337778999999999999984 333 778899999999999998844  3788899999999999997


Q ss_pred             C
Q 035693          316 D  316 (348)
Q Consensus       316 ~  316 (348)
                      +
T Consensus       231 ~  231 (308)
T 1h6u_A          231 N  231 (308)
T ss_dssp             C
T ss_pred             c
Confidence            6

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=1.9e-20  Score=159.81  Aligned_cols=180  Identities=18%  Similarity=0.199  Sum_probs=123.1

Q ss_pred             CCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCE
Q 035693          131 ELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTT  210 (348)
Q Consensus       131 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  210 (348)
                      ..++++++++.+...+..    +  .+++++|++++|.+.+..+..+..+++|++|++++| .+....+..+..+++|++
T Consensus        15 ~~~~l~~~~~~l~~~p~~----~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~   87 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSG----I--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGT   87 (251)
T ss_dssp             GGTEEECTTCCCSSCCSC----C--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred             CCeEEecCCCCccccCCC----C--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCE
Confidence            455666666666554431    1  246777777777777666666677777777777776 334444555667777777


Q ss_pred             EEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCcc
Q 035693          211 LDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNF  290 (348)
Q Consensus       211 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l  290 (348)
                      |++++|.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus        88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  167 (251)
T 3m19_A           88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL  167 (251)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence            77777777655555566777777777777776655445566677788888888877755455677777888888888888


Q ss_pred             CCCCcccccCCCCCCEEeCCCCccCCc
Q 035693          291 TRPIPTSMANLTQLFHLDFSSNHFSDP  317 (348)
Q Consensus       291 ~~~~~~~l~~~~~L~~L~l~~n~l~~~  317 (348)
                      .+..+..+..+++|+.|++++|++.+.
T Consensus       168 ~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          168 QSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            776666677777888888888887764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=5e-22  Score=178.86  Aligned_cols=259  Identities=17%  Similarity=0.179  Sum_probs=180.6

Q ss_pred             EEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCC---C---CCC-CCcEEecCCCCCCCCcceeecCCCh--
Q 035693           53 GLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMP---S---SLP-RLVTLDLSSREPISGFSWRLEIPNF--  123 (348)
Q Consensus        53 ~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~---~~~-~L~~L~l~~~~~~~~~~~~~~~~~~--  123 (348)
                      .++++.+ .+.+.+|.  .+...++|+.|++++|.+++.+..   .   .++ +|++|++++|.++..      .+..  
T Consensus         2 ~~~ls~n-~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~------~~~~l~   72 (362)
T 3goz_A            2 NYKLTLH-PGSNPVEE--FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK------NSDELV   72 (362)
T ss_dssp             EEECCCC-TTCCHHHH--HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS------CHHHHH
T ss_pred             ccccccc-cchHHHHH--HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH------HHHHHH
Confidence            4577888 77777774  445556699999999998886321   1   677 899999999976421      1111  


Q ss_pred             hhhcCC-CCCcEEEccCcCCCCcchh-hhhhhCCC-CCCcEEEccCccCCCcchHHhhh-----ccCCCEEEcccCCCCC
Q 035693          124 NFFQNL-TELRELYLDNVDLSGRRTE-WCKAMSFL-PNLQVLNLSNCLLSDPINHHLAN-----LLSLSVIRLRDNHAVS  195 (348)
Q Consensus       124 ~~~~~l-~~L~~L~l~~~~~~~~~~~-~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~  195 (348)
                      ..+... ++|++|++++|++++..+. +...+..+ ++|++|++++|.+++..+..+..     ..+|++|++++|....
T Consensus        73 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A           73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence            112333 8999999999998866553 22335555 78999999999988765555433     3589999999985432


Q ss_pred             C---ChhhhhhcCC-CCCEEEccCCcCCCcccc----cccCC-CCccEEEccCCCCCCCCCCCCCC-----CCCCcEEEc
Q 035693          196 C---QVPEFVANLL-NLTTLDLSQCDLHGKFPE----KVLQV-PTLETLDLSYNSLLQGSLPHFPK-----NSSLRNLNL  261 (348)
Q Consensus       196 ~---~~~~~l~~l~-~L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~l~~~~~~~~~~-----~~~L~~L~l  261 (348)
                      .   .+...+...+ +|++|++++|.+.+..+.    .+... ++|++|++++|.+.......+..     .++|++|++
T Consensus       153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L  232 (362)
T 3goz_A          153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL  232 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred             HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence            2   2334455665 899999999988765543    34445 58999999999886654443322     358999999


Q ss_pred             ccCCCCCCCC----ccccCCCCCCEEeecCCccCCC-------CcccccCCCCCCEEeCCCCccCCccCc
Q 035693          262 KNTSFSGKLP----DSIGNLENLASVDVSSCNFTRP-------IPTSMANLTQLFHLDFSSNHFSDPIPT  320 (348)
Q Consensus       262 s~n~~~~~~~----~~l~~~~~L~~L~L~~n~l~~~-------~~~~l~~~~~L~~L~l~~n~l~~~~~~  320 (348)
                      ++|.+.+..+    ..+..+++|++|++++|.+.+.       ++..+..+++|+.|++++|++.+..+.
T Consensus       233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~  302 (362)
T 3goz_A          233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI  302 (362)
T ss_dssp             CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred             cCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence            9999885433    2345678899999999985542       333566778899999999998875333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.86  E-value=4.8e-20  Score=175.97  Aligned_cols=229  Identities=23%  Similarity=0.247  Sum_probs=159.2

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCCh-----
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNF-----  123 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-----  123 (348)
                      +++++|++++| .+. .+|.     .+++|+.|++++|.+++  +|..+++|++|++++|.++.       ++..     
T Consensus        61 ~~L~~L~L~~N-~l~-~lp~-----~l~~L~~L~Ls~N~l~~--lp~~l~~L~~L~Ls~N~l~~-------l~~~l~~L~  124 (622)
T 3g06_A           61 AHITTLVIPDN-NLT-SLPA-----LPPELRTLEVSGNQLTS--LPVLPPGLLELSIFSNPLTH-------LPALPSGLC  124 (622)
T ss_dssp             TTCSEEEECSC-CCS-CCCC-----CCTTCCEEEECSCCCSC--CCCCCTTCCEEEECSCCCCC-------CCCCCTTCC
T ss_pred             CCCcEEEecCC-CCC-CCCC-----cCCCCCEEEcCCCcCCc--CCCCCCCCCEEECcCCcCCC-------CCCCCCCcC
Confidence            57888888888 665 4443     46788888888888776  55577888888888877642       1110     


Q ss_pred             ----------hhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCC
Q 035693          124 ----------NFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHA  193 (348)
Q Consensus       124 ----------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  193 (348)
                                ..-..+++|++|++++|.++..+.       ...+|+.|++++|.++. +|   ..+++|+.|++++|..
T Consensus       125 ~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~-------~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l  193 (622)
T 3g06_A          125 KLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA-------LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQL  193 (622)
T ss_dssp             EEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCC
T ss_pred             EEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCC-------ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCC
Confidence                      000112444555555544443221       22445555555555554 23   3347899999999854


Q ss_pred             CCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCcc
Q 035693          194 VSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDS  273 (348)
Q Consensus       194 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~  273 (348)
                      ..  ++.   .+++|+.|++++|.+. .+|.   .+++|+.|++++|.+..  ++  ..+++|++|++++|.++ .+|. 
T Consensus       194 ~~--l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~--lp--~~l~~L~~L~Ls~N~L~-~lp~-  258 (622)
T 3g06_A          194 AS--LPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS--LP--VLPSELKELMVSGNRLT-SLPM-  258 (622)
T ss_dssp             SC--CCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC--CC--CCCTTCCEEECCSSCCS-CCCC-
T ss_pred             CC--CCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc--CC--CCCCcCcEEECCCCCCC-cCCc-
Confidence            32  222   3478999999999987 4554   34789999999998754  33  34689999999999998 5665 


Q ss_pred             ccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchh
Q 035693          274 IGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLR  322 (348)
Q Consensus       274 l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~  322 (348)
                        .+++|+.|++++|.+.. +|..+..+++|+.|++++|++.+..+..+
T Consensus       259 --~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~~~~l  304 (622)
T 3g06_A          259 --LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQAL  304 (622)
T ss_dssp             --CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred             --ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence              56899999999999996 78889999999999999999988666543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=3.8e-22  Score=179.60  Aligned_cols=257  Identities=18%  Similarity=0.185  Sum_probs=183.3

Q ss_pred             EEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCC-CCcEEEccCcCCCCcchhh-hhhhC
Q 035693           80 SLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLT-ELRELYLDNVDLSGRRTEW-CKAMS  154 (348)
Q Consensus        80 ~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~-~~~~~  154 (348)
                      ..+++++.+++. ++.   ..++|++|++++|.++.....  .  -.+.+..++ +|++|++++|.+++..+.. ...+.
T Consensus         2 ~~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~--~--l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~   76 (362)
T 3goz_A            2 NYKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTV--E--LIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA   76 (362)
T ss_dssp             EEECCCCTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHH--H--HHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred             ccccccccchHH-HHHHHhCCCCceEEEccCCCCChHHHH--H--HHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHh
Confidence            356778888775 554   455699999999986421100  0  003477888 9999999999998765532 22333


Q ss_pred             CC-CCCcEEEccCccCCCcchHHhhh----c-cCCCEEEcccCCCCCCChhhh----hhc-CCCCCEEEccCCcCCCc--
Q 035693          155 FL-PNLQVLNLSNCLLSDPINHHLAN----L-LSLSVIRLRDNHAVSCQVPEF----VAN-LLNLTTLDLSQCDLHGK--  221 (348)
Q Consensus       155 ~~-~~L~~L~l~~~~~~~~~~~~~~~----~-~~L~~L~l~~~~~~~~~~~~~----l~~-l~~L~~L~l~~~~~~~~--  221 (348)
                      .. ++|++|++++|.+++..+..+..    + ++|++|++++|.. .......    +.. ..+|++|++++|.+.+.  
T Consensus        77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  155 (362)
T 3goz_A           77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS  155 (362)
T ss_dssp             TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH
T ss_pred             ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH
Confidence            33 89999999999998766665444    4 8999999999954 4333333    344 36999999999998753  


Q ss_pred             --ccccccCCC-CccEEEccCCCCCCCCCCCCC----CC-CCCcEEEcccCCCCCC----CCccccC-CCCCCEEeecCC
Q 035693          222 --FPEKVLQVP-TLETLDLSYNSLLQGSLPHFP----KN-SSLRNLNLKNTSFSGK----LPDSIGN-LENLASVDVSSC  288 (348)
Q Consensus       222 --~~~~l~~~~-~L~~L~l~~~~l~~~~~~~~~----~~-~~L~~L~ls~n~~~~~----~~~~l~~-~~~L~~L~L~~n  288 (348)
                        ++..+...+ +|++|++++|.+.......+.    .. ++|++|++++|.+.+.    ++..+.. .++|++|++++|
T Consensus       156 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N  235 (362)
T 3goz_A          156 DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN  235 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred             HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence              334445555 999999999998666554333    34 5999999999998853    3444544 459999999999


Q ss_pred             ccCCCCc----ccccCCCCCCEEeCCCCccCCccCch------hhhhhcCCCeeecccCccccc
Q 035693          289 NFTRPIP----TSMANLTQLFHLDFSSNHFSDPIPTL------RLYMSRNLNYLNLSSNDLTGG  342 (348)
Q Consensus       289 ~l~~~~~----~~l~~~~~L~~L~l~~n~l~~~~~~~------~~~~~~~L~~L~l~~n~l~g~  342 (348)
                      .+.+..+    ..+..+++|+.|++++|.+.+..+..      .+...++|++||+++|++.+.
T Consensus       236 ~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            9988544    34467789999999999965422221      122336799999999999765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=1.6e-21  Score=173.70  Aligned_cols=233  Identities=20%  Similarity=0.253  Sum_probs=172.7

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCC---CCCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMP---SSLPRLVTLDLSSREPISGFSWRLEIPNFNF  125 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  125 (348)
                      .+++.|+++++ .+.+..+   .+.++++|+.|++++|.+++..++   ..+++|++|++++|.+++      ..+.  .
T Consensus        70 ~~l~~L~l~~n-~l~~~~~---~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~------~~~~--~  137 (336)
T 2ast_B           70 QGVIAFRCPRS-FMDQPLA---EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD------PIVN--T  137 (336)
T ss_dssp             TTCSEEECTTC-EECSCCC---SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH------HHHH--H
T ss_pred             ccceEEEcCCc-cccccch---hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH------HHHH--H
Confidence            57899999999 7776655   466899999999999987654233   388999999999997532      2222  3


Q ss_pred             hcCCCCCcEEEccCc-CCCCcchhhhhhhCCCCCCcEEEccCc-cCCCc-chHHhhhcc-CCCEEEcccCC-CCC-CChh
Q 035693          126 FQNLTELRELYLDNV-DLSGRRTEWCKAMSFLPNLQVLNLSNC-LLSDP-INHHLANLL-SLSVIRLRDNH-AVS-CQVP  199 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~-~~~-~~~~  199 (348)
                      +..+++|++|++++| .+++..  +...+..+++|++|++++| .+++. ++..+..++ +|++|++++|. ..+ ..++
T Consensus       138 l~~~~~L~~L~L~~~~~l~~~~--l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~  215 (336)
T 2ast_B          138 LAKNSNLVRLNLSGCSGFSEFA--LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS  215 (336)
T ss_dssp             HTTCTTCSEEECTTCBSCCHHH--HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH
T ss_pred             HhcCCCCCEEECCCCCCCCHHH--HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH
Confidence            778999999999999 565421  2244677899999999999 88764 577788899 99999999984 222 4566


Q ss_pred             hhhhcCCCCCEEEccCCc-CCCcccccccCCCCccEEEccCCC-CCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCC
Q 035693          200 EFVANLLNLTTLDLSQCD-LHGKFPEKVLQVPTLETLDLSYNS-LLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNL  277 (348)
Q Consensus       200 ~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~  277 (348)
                      ..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| ++..   .+..+
T Consensus       216 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l  291 (336)
T 2ast_B          216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLL  291 (336)
T ss_dssp             HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHH
T ss_pred             HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHH
Confidence            777889999999999998 666677788889999999999984 33333345666888999999888 4422   22222


Q ss_pred             -CCCCEEeecCCccCCCCccccc
Q 035693          278 -ENLASVDVSSCNFTRPIPTSMA  299 (348)
Q Consensus       278 -~~L~~L~L~~n~l~~~~~~~l~  299 (348)
                       ..+..|++++|.+++..|..+.
T Consensus       292 ~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          292 KEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             HHHSTTSEESCCCSCCTTCSSCS
T ss_pred             HhhCcceEEecccCccccCCccc
Confidence             2466666888888886666554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=5.9e-20  Score=156.74  Aligned_cols=181  Identities=17%  Similarity=0.186  Sum_probs=153.9

Q ss_pred             CCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEE
Q 035693          157 PNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLD  236 (348)
Q Consensus       157 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  236 (348)
                      ...++++++++.+.. +|..+.  +.++.|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus        14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence            357889999998886 554443  689999999994 5555667788999999999999999977777789999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCC
Q 035693          237 LSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSD  316 (348)
Q Consensus       237 l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~  316 (348)
                      +++|.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            99999876666778889999999999999996656667889999999999999998666678899999999999999987


Q ss_pred             ccCchhhhhhcCCCeeecccCccccc
Q 035693          317 PIPTLRLYMSRNLNYLNLSSNDLTGG  342 (348)
Q Consensus       317 ~~~~~~~~~~~~L~~L~l~~n~l~g~  342 (348)
                       ++...+..+++|++|++++|++++.
T Consensus       170 -~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          170 -VPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             -CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             -cCHHHHhCCCCCCEEEeeCCceeCC
Confidence             5544445568999999999999865

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.84  E-value=6.7e-22  Score=189.43  Aligned_cols=286  Identities=16%  Similarity=0.133  Sum_probs=186.9

Q ss_pred             CCEEEEeCCCCcccccc----ccCCcccccccccCEEeCCCCCCCCCC---CCC---CCCCCcEEecCCCCCCCCc----
Q 035693           49 GHVIGLDLSAEPILIGS----LENASGLFSLQYLQSLNLGFTLFYGFP---MPS---SLPRLVTLDLSSREPISGF----  114 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~---~~~~L~~L~l~~~~~~~~~----  114 (348)
                      ++|++|+|++| .+.+.    ++.  .+.++++|+.|++++|.+++..   ++.   .+++|++|++++|.+....    
T Consensus       164 ~~L~~L~L~~~-~~~~~~~~~l~~--~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~  240 (592)
T 3ogk_B          164 RKIKTLLMEES-SFSEKDGKWLHE--LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK  240 (592)
T ss_dssp             TTCSEEECTTC-EEECCCSHHHHH--HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred             CCCCEEECccc-cccCcchhHHHH--HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence            56777777777 54332    221  3346677777777776665321   111   5666666666665432100    


Q ss_pred             ------c---------------------------------eeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCC
Q 035693          115 ------S---------------------------------WRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSF  155 (348)
Q Consensus       115 ------~---------------------------------~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  155 (348)
                            .                                 ....++.  .+..+++|++|++++|.+++...  ...+..
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~Ls~~~l~~~~~--~~~~~~  316 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI--LFPFAAQIRKLDLLYALLETEDH--CTLIQK  316 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG--GGGGGGGCCEEEETTCCCCHHHH--HHHHTT
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH--HHhhcCCCcEEecCCCcCCHHHH--HHHHHh
Confidence                  0                                 0011122  25678889999999988654322  234678


Q ss_pred             CCCCcEEEccCccCCCc-chHHhhhccCCCEEEccc----------CCCCCC-ChhhhhhcCCCCCEEEccCCcCCCccc
Q 035693          156 LPNLQVLNLSNCLLSDP-INHHLANLLSLSVIRLRD----------NHAVSC-QVPEFVANLLNLTTLDLSQCDLHGKFP  223 (348)
Q Consensus       156 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~----------~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~  223 (348)
                      +++|++|+++ +.+.+. ++.....+++|++|++++          +...+. .+......+++|++|++..+.+++..+
T Consensus       317 ~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~  395 (592)
T 3ogk_B          317 CPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL  395 (592)
T ss_dssp             CTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHH
T ss_pred             CcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHH
Confidence            8999999998 444332 444556788999999994          433433 233445678999999998888876666


Q ss_pred             ccccC-CCCccEEEcc----CCCCCCCC----CCC-CCCCCCCcEEEcccCC--CCCCCCcccc-CCCCCCEEeecCCcc
Q 035693          224 EKVLQ-VPTLETLDLS----YNSLLQGS----LPH-FPKNSSLRNLNLKNTS--FSGKLPDSIG-NLENLASVDVSSCNF  290 (348)
Q Consensus       224 ~~l~~-~~~L~~L~l~----~~~l~~~~----~~~-~~~~~~L~~L~ls~n~--~~~~~~~~l~-~~~~L~~L~L~~n~l  290 (348)
                      ..+.. +++|+.|+++    .+.++...    ++. +..+++|++|+++.|.  +++.....+. .+++|+.|++++|++
T Consensus       396 ~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l  475 (592)
T 3ogk_B          396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE  475 (592)
T ss_dssp             HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCS
T ss_pred             HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCC
Confidence            66655 8899999997    33343221    111 2337899999997654  5433333333 478999999999999


Q ss_pred             CC-CCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccccc
Q 035693          291 TR-PIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGG  342 (348)
Q Consensus       291 ~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~  342 (348)
                      ++ .++..+..+++|+.|++++|++++.....+...+++|++|+|++|++++.
T Consensus       476 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          476 SDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             SHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            86 34555678899999999999987654445555669999999999999864

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=9.7e-20  Score=160.12  Aligned_cols=195  Identities=23%  Similarity=0.264  Sum_probs=111.2

Q ss_pred             cccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhh
Q 035693           72 LFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCK  151 (348)
Q Consensus        72 l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  151 (348)
                      ...+++|+.|+++++.+........+++|++|++++|.+..       ++.   +..+++|++|++++|.+.+..     
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~-------~~~---~~~l~~L~~L~L~~n~l~~~~-----  101 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD-------LAP---LKNLTKITELELSGNPLKNVS-----  101 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-------CGG---GTTCCSCCEEECCSCCCSCCG-----
T ss_pred             HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCC-------Chh---HccCCCCCEEEccCCcCCCch-----
Confidence            34556666666666655553222255666666666665431       111   455666666666666665432     


Q ss_pred             hhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCC
Q 035693          152 AMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPT  231 (348)
Q Consensus       152 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~  231 (348)
                      .+..+++|++|++++|.+.+. + .+..+++|++|++++|.. ... + .+..+++|++|++++|.+.+ .+. +..+++
T Consensus       102 ~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l-~~~-~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~  174 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQI-TNI-S-PLAGLTNLQYLSIGNAQVSD-LTP-LANLSK  174 (308)
T ss_dssp             GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCC-CCC-G-GGGGCTTCCEEECCSSCCCC-CGG-GTTCTT
T ss_pred             hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCcc-CcC-c-cccCCCCccEEEccCCcCCC-Chh-hcCCCC
Confidence            355666666666666666652 2 256666666666666632 221 1 15566666666666666653 222 566666


Q ss_pred             ccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCC
Q 035693          232 LETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR  292 (348)
Q Consensus       232 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~  292 (348)
                      |+.|++++|.+...  +.+..+++|++|++++|.+.+. + .+..+++|+.|++++|++..
T Consensus       175 L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          175 LTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEEEEEEC
T ss_pred             CCEEECCCCccCcC--hhhcCCCCCCEEEccCCccCcc-c-cccCCCCCCEEEccCCeeec
Confidence            66666666665322  2255566677777777766633 2 25566677777777776655

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=1.1e-20  Score=160.10  Aligned_cols=177  Identities=20%  Similarity=0.244  Sum_probs=93.3

Q ss_pred             hCCCCCCcEEEccCcc-CCCcchHHhhhccCCCEEEccc-CCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCC
Q 035693          153 MSFLPNLQVLNLSNCL-LSDPINHHLANLLSLSVIRLRD-NHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVP  230 (348)
Q Consensus       153 ~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~  230 (348)
                      +..+++|++|++++|. ++...+..+..+++|++|++++ | .++...+..+..+++|++|++++|.+.+ +|. +..++
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~  127 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY  127 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC
T ss_pred             ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc
Confidence            3344444444444443 3333333444444444454444 3 2222222334455555555555555542 333 44555


Q ss_pred             Ccc---EEEccCC-CCCCCCCCCCCCCCCCc-EEEcccCCCCCCCCccccCCCCCCEEeecCCc-cCCCCcccccCC-CC
Q 035693          231 TLE---TLDLSYN-SLLQGSLPHFPKNSSLR-NLNLKNTSFSGKLPDSIGNLENLASVDVSSCN-FTRPIPTSMANL-TQ  303 (348)
Q Consensus       231 ~L~---~L~l~~~-~l~~~~~~~~~~~~~L~-~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~-~~  303 (348)
                      +|+   .|++++| .+.......|..+++|+ +|++++|.++ .+|......++|++|++++|+ +....+..+..+ ++
T Consensus       128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~  206 (239)
T 2xwt_C          128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG  206 (239)
T ss_dssp             BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred             ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccC
Confidence            555   6666666 55444444455566666 6666666665 333322222567777777774 665445556666 67


Q ss_pred             CCEEeCCCCccCCccCchhhhhhcCCCeeecccC
Q 035693          304 LFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSN  337 (348)
Q Consensus       304 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n  337 (348)
                      |+.|++++|++.+ +|..   ..++|+.|+++++
T Consensus       207 L~~L~l~~N~l~~-l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          207 PSLLDVSQTSVTA-LPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CSEEECTTCCCCC-CCCT---TCTTCSEEECTTC
T ss_pred             CcEEECCCCcccc-CChh---HhccCceeeccCc
Confidence            7777777777764 4443   2356777777665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=5.2e-20  Score=155.89  Aligned_cols=177  Identities=17%  Similarity=0.202  Sum_probs=98.5

Q ss_pred             hcCCCCCcEEEccCcC-CCCcchhhhhhhCCCCCCcEEEccC-ccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhh
Q 035693          126 FQNLTELRELYLDNVD-LSGRRTEWCKAMSFLPNLQVLNLSN-CLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVA  203 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~  203 (348)
                      +.++++|++|++++|+ ++...+   ..+..+++|++|++++ |.++...+..+..+++|++|++++|.. +. ++. +.
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i~~---~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l-~~-lp~-~~  124 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQLES---HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KM-FPD-LT  124 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEECT---TTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECC-CS-CCC-CT
T ss_pred             ccCCCCCcEEeCCCCCCcceeCH---hHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC-cc-ccc-cc
Confidence            4445555555555554 443332   2344555555555555 555544444455555566666655532 21 222 44


Q ss_pred             cCCCCC---EEEccCC-cCCCcccccccCCCCcc-EEEccCCCCCCCCCCCCCCCCCCcEEEcccCC-CCCCCCccccCC
Q 035693          204 NLLNLT---TLDLSQC-DLHGKFPEKVLQVPTLE-TLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTS-FSGKLPDSIGNL  277 (348)
Q Consensus       204 ~l~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~-~~~~~~~~l~~~  277 (348)
                      .+++|+   +|++++| .+....+..+..+++|+ .|++++|.+.......+.. ++|++|++++|+ +++..+..+..+
T Consensus       125 ~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l  203 (239)
T 2xwt_C          125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGV  203 (239)
T ss_dssp             TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTC
T ss_pred             cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhcc
Confidence            555555   6666666 55533333456666676 7777666654333333433 567777777774 653334456666


Q ss_pred             -CCCCEEeecCCccCCCCcccccCCCCCCEEeCCCC
Q 035693          278 -ENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSN  312 (348)
Q Consensus       278 -~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n  312 (348)
                       ++|+.|++++|++.. +|..  .+++|+.|+++++
T Consensus       204 ~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          204 YSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             SBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             ccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence             677777777777765 3332  4567777777665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=2.1e-19  Score=148.77  Aligned_cols=175  Identities=18%  Similarity=0.122  Sum_probs=89.0

Q ss_pred             cEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEE
Q 035693          133 RELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLD  212 (348)
Q Consensus       133 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  212 (348)
                      +.++++++.++..+.      ...++|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus        10 ~~v~c~~~~l~~~p~------~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~   82 (208)
T 2o6s_A           10 TTVECYSQGRTSVPT------GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLN   82 (208)
T ss_dssp             TEEECCSSCCSSCCS------CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred             CEEEecCCCccCCCC------CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEE
Confidence            456666666554432      123467777777776665444455666666666666663 2323333445555666666


Q ss_pred             ccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCC
Q 035693          213 LSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR  292 (348)
Q Consensus       213 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~  292 (348)
                      +++|.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus        83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A           83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence            66665553333334455555555555555443333334445555555555555543333334444555555555554432


Q ss_pred             CCcccccCCCCCCEEeCCCCccCCccCch
Q 035693          293 PIPTSMANLTQLFHLDFSSNHFSDPIPTL  321 (348)
Q Consensus       293 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~  321 (348)
                             .+++|+.|+++.|.+.+.+|..
T Consensus       163 -------~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          163 -------TCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             -------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred             -------CCCCHHHHHHHHHhCCceeecc
Confidence                   2234445555555555444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.81  E-value=2.1e-21  Score=185.93  Aligned_cols=282  Identities=10%  Similarity=-0.013  Sum_probs=155.3

Q ss_pred             CEEEEeCCCCccccc-cccCCcccccccccCEEeCCCCCCCCCCC------CCCCCCCcEEecCCCCCCCCcceeecCCC
Q 035693           50 HVIGLDLSAEPILIG-SLENASGLFSLQYLQSLNLGFTLFYGFPM------PSSLPRLVTLDLSSREPISGFSWRLEIPN  122 (348)
Q Consensus        50 ~l~~L~ls~~~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  122 (348)
                      +|++|++++|..+.. .++.  .+.++++|+.|++++|.+++.+.      +..+++|++|++++|.+....  ...++ 
T Consensus       139 ~L~~L~L~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~--~~~l~-  213 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDGLLS--IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKIS--PKDLE-  213 (592)
T ss_dssp             GCCEEEEESCEEEEHHHHHH--HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCC--HHHHH-
T ss_pred             cCcEEECcCCCCcCHHHHHH--HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccC--HHHHH-
Confidence            499999999832221 2221  34589999999999998876531      227899999999999864110  01112 


Q ss_pred             hhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEcc---------------------------CccCCCcchH
Q 035693          123 FNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLS---------------------------NCLLSDPINH  175 (348)
Q Consensus       123 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~---------------------------~~~~~~~~~~  175 (348)
                       ..+.++++|+.|++++|.+.+..    ..+..+++|++|+++                           ++. ...++.
T Consensus       214 -~~~~~~~~L~~L~L~~~~~~~l~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~  287 (592)
T 3ogk_B          214 -TIARNCRSLVSVKVGDFEILELV----GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPI  287 (592)
T ss_dssp             -HHHHHCTTCCEEECSSCBGGGGH----HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGG
T ss_pred             -HHHhhCCCCcEEeccCccHHHHH----HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHH
Confidence             22567888888888887764422    222333333333332                           111 111333


Q ss_pred             HhhhccCCCEEEcccCCCCCCChhhhhhcC------------------------CCCCEEEccC-----------CcCCC
Q 035693          176 HLANLLSLSVIRLRDNHAVSCQVPEFVANL------------------------LNLTTLDLSQ-----------CDLHG  220 (348)
Q Consensus       176 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l------------------------~~L~~L~l~~-----------~~~~~  220 (348)
                      .+..+++|++|++++|..........+..+                        ++|++|++++           +.++.
T Consensus       288 ~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~  367 (592)
T 3ogk_B          288 LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ  367 (592)
T ss_dssp             GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred             HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH
Confidence            444455555555555531111111223344                        4455555542           22221


Q ss_pred             c-ccccccCCCCccEEEccCCCCCCCCCCCCCC-CCCCcEEEcc----cCCCCCC-----CCccccCCCCCCEEeecCCc
Q 035693          221 K-FPEKVLQVPTLETLDLSYNSLLQGSLPHFPK-NSSLRNLNLK----NTSFSGK-----LPDSIGNLENLASVDVSSCN  289 (348)
Q Consensus       221 ~-~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~ls----~n~~~~~-----~~~~l~~~~~L~~L~L~~n~  289 (348)
                      . .......+++|++|++..+.++...+..+.. +++|++|+++    .+.+++.     ++..+..+++|+.|++++|.
T Consensus       368 ~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~  447 (592)
T 3ogk_B          368 RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ  447 (592)
T ss_dssp             HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred             HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence            1 1111223455555555444443333333333 5667777775    3344422     12224456778888886543


Q ss_pred             --cCCCCcccc-cCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccccc
Q 035693          290 --FTRPIPTSM-ANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGG  342 (348)
Q Consensus       290 --l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~  342 (348)
                        +++..+..+ ..+++|+.|++++|++++.....+...+++|++|+|++|.+++.
T Consensus       448 ~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  503 (592)
T 3ogk_B          448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER  503 (592)
T ss_dssp             GGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred             CCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence              444333333 34788999999998887643334455568899999999988654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.79  E-value=2.7e-20  Score=178.33  Aligned_cols=209  Identities=16%  Similarity=0.134  Sum_probs=120.4

Q ss_pred             CCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCc-chHHhhhccCCCEEEccc--------CCCCCCCh
Q 035693          128 NLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDP-INHHLANLLSLSVIRLRD--------NHAVSCQV  198 (348)
Q Consensus       128 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~--------~~~~~~~~  198 (348)
                      .+++|++|++++|.+++..  +...+..+++|++|++.+| +.+. ++.....+++|++|++.+        +...+...
T Consensus       287 ~~~~L~~L~L~~~~l~~~~--l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~  363 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYD--LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG  363 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHH--HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred             hhCCCCEEEccCCCCCHHH--HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence            3455555555555543211  1122345566666666655 2221 222223456677766632        11222211


Q ss_pred             hhh-hhcCCCCCEEEccCCcCCCccccccc-CCCCccEEEcc--C----CCCCCCCC----CC-CCCCCCCcEEEcccCC
Q 035693          199 PEF-VANLLNLTTLDLSQCDLHGKFPEKVL-QVPTLETLDLS--Y----NSLLQGSL----PH-FPKNSSLRNLNLKNTS  265 (348)
Q Consensus       199 ~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~--~----~~l~~~~~----~~-~~~~~~L~~L~ls~n~  265 (348)
                      ... ...+++|++|.+..+.+++.....+. .+++|+.|+++  +    +.++....    .. +..+++|++|++++ .
T Consensus       364 l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~  442 (594)
T 2p1m_B          364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-L  442 (594)
T ss_dssp             HHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-S
T ss_pred             HHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-c
Confidence            222 23466777776666666544444443 46788888887  2    22321111    11 23367888888876 4


Q ss_pred             CCCCCCccccC-CCCCCEEeecCCccCCCCcccc-cCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccc
Q 035693          266 FSGKLPDSIGN-LENLASVDVSSCNFTRPIPTSM-ANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT  340 (348)
Q Consensus       266 ~~~~~~~~l~~-~~~L~~L~L~~n~l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  340 (348)
                      +++.....+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|++++.........+++|++|++++|+++
T Consensus       443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            54333334443 7889999999999876444444 568899999999999865444444555689999999999875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=3.4e-18  Score=141.52  Aligned_cols=160  Identities=18%  Similarity=0.154  Sum_probs=78.5

Q ss_pred             CCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCC
Q 035693          130 TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLT  209 (348)
Q Consensus       130 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  209 (348)
                      ++|++|++++|++....+   ..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~  103 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPN---GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLK  103 (208)
T ss_dssp             TTCSEEECCSSCCCCCCT---TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred             CCCcEEEcCCCccCcCCh---hhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCC
Confidence            345555555555554333   234445555555555555554333444555555555555552 2222333344555555


Q ss_pred             EEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCc
Q 035693          210 TLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCN  289 (348)
Q Consensus       210 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~  289 (348)
                      +|++++|.+.+..+..+..+++|+.|++++|.+.......+..+++|++|++++|.+.+       .+++|+.|++..|.
T Consensus       104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~  176 (208)
T 2o6s_A          104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINK  176 (208)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHH
T ss_pred             EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHh
Confidence            55555555553333334455555555555555443333334445555555555554431       23345555555555


Q ss_pred             cCCCCcccccC
Q 035693          290 FTRPIPTSMAN  300 (348)
Q Consensus       290 l~~~~~~~l~~  300 (348)
                      +.+.+|..++.
T Consensus       177 ~~g~ip~~~~~  187 (208)
T 2o6s_A          177 HSGVVRNSAGS  187 (208)
T ss_dssp             CTTTBBCTTSS
T ss_pred             CCceeeccCcc
Confidence            55555544443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=5.9e-18  Score=147.48  Aligned_cols=173  Identities=23%  Similarity=0.365  Sum_probs=138.1

Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL  205 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l  205 (348)
                      +..+++|+.|++++|.+....     .+..+++|++|++++|.+++..+  +..+++|++|++++|.. ..  ...+..+
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~~-----~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l-~~--~~~l~~l  111 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSVQ-----GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV-KD--LSSLKDL  111 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT-----TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-CC--GGGGTTC
T ss_pred             hhhcCcccEEEccCCCcccCh-----hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC-CC--ChhhccC
Confidence            567888999999999887653     36778899999999999887544  88889999999999843 32  3347888


Q ss_pred             CCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEee
Q 035693          206 LNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDV  285 (348)
Q Consensus       206 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L  285 (348)
                      ++|++|++++|.+.+ + ..+..+++|+.|++++|.+...  +.+..+++|+.|++++|.+.+..+  +..+++|++|++
T Consensus       112 ~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L  185 (291)
T 1h6t_A          112 KKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL  185 (291)
T ss_dssp             TTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEEC
Confidence            899999999998874 3 4577888999999999887543  566778889999999998885433  778889999999


Q ss_pred             cCCccCCCCcccccCCCCCCEEeCCCCccCC
Q 035693          286 SSCNFTRPIPTSMANLTQLFHLDFSSNHFSD  316 (348)
Q Consensus       286 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~  316 (348)
                      ++|.+.+ ++ .+..+++|+.|++++|++.+
T Consensus       186 ~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          186 SKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            9998887 44 37788899999999998876

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.77  E-value=3.3e-20  Score=177.76  Aligned_cols=113  Identities=12%  Similarity=0.096  Sum_probs=66.8

Q ss_pred             CCCccEEEccCCCCCCCCCCCCC-CCCCCcEEEcc--c----CCCCCCC-----CccccCCCCCCEEeecCCccCCCCcc
Q 035693          229 VPTLETLDLSYNSLLQGSLPHFP-KNSSLRNLNLK--N----TSFSGKL-----PDSIGNLENLASVDVSSCNFTRPIPT  296 (348)
Q Consensus       229 ~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~ls--~----n~~~~~~-----~~~l~~~~~L~~L~L~~n~l~~~~~~  296 (348)
                      +++|+.|.+..+.+.......+. .+++|+.|+++  +    +.+++..     +..+..+++|+.|++++ .+++..+.
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~  449 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE  449 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence            34455554444443322222222 25677777777  2    3333111     11144567788888766 55543444


Q ss_pred             cccC-CCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccccc
Q 035693          297 SMAN-LTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGG  342 (348)
Q Consensus       297 ~l~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~  342 (348)
                      .+.. +++|+.|++++|.+++.....+...+++|++|+|++|.+++.
T Consensus       450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~  496 (594)
T 2p1m_B          450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK  496 (594)
T ss_dssp             HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred             HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence            4443 788999999999887655555545678999999999988643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=3.9e-18  Score=160.95  Aligned_cols=187  Identities=21%  Similarity=0.281  Sum_probs=141.4

Q ss_pred             CCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHh
Q 035693           98 PRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHL  177 (348)
Q Consensus        98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  177 (348)
                      .+|+.|++++|.++       .+|..  +  .++|+.|++++|.++..+       ..+++|++|++++|.+++ +|. +
T Consensus        59 ~~L~~L~Ls~n~L~-------~lp~~--l--~~~L~~L~Ls~N~l~~ip-------~~l~~L~~L~Ls~N~l~~-ip~-l  118 (571)
T 3cvr_A           59 NQFSELQLNRLNLS-------SLPDN--L--PPQITVLEITQNALISLP-------ELPASLEYLDACDNRLST-LPE-L  118 (571)
T ss_dssp             TTCSEEECCSSCCS-------CCCSC--C--CTTCSEEECCSSCCSCCC-------CCCTTCCEEECCSSCCSC-CCC-C
T ss_pred             CCccEEEeCCCCCC-------ccCHh--H--cCCCCEEECcCCCCcccc-------cccCCCCEEEccCCCCCC-cch-h
Confidence            38999999999864       24442  2  368999999999887533       346889999999999887 555 4


Q ss_pred             hhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCc
Q 035693          178 ANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLR  257 (348)
Q Consensus       178 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~  257 (348)
                      ..  +|++|++++|.+ +. ++.   .+++|++|++++|.+++ +|.   .+++|+.|++++|.+..  ++.+.  ++|+
T Consensus       119 ~~--~L~~L~Ls~N~l-~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~--lp~l~--~~L~  183 (571)
T 3cvr_A          119 PA--SLKHLDVDNNQL-TM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF--LPELP--ESLE  183 (571)
T ss_dssp             CT--TCCEEECCSSCC-SC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC--CCCCC--TTCC
T ss_pred             hc--CCCEEECCCCcC-CC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC--cchhh--CCCC
Confidence            44  899999999844 33 343   57889999999999874 555   56789999999998755  33354  7899


Q ss_pred             EEEcccCCCCCCCCccccCCCCC-------CEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhh
Q 035693          258 NLNLKNTSFSGKLPDSIGNLENL-------ASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLY  324 (348)
Q Consensus       258 ~L~ls~n~~~~~~~~~l~~~~~L-------~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~  324 (348)
                      .|++++|.++ .+|. +..  +|       +.|++++|.++. +|..+..+++|+.|++++|++.+.+|..+..
T Consensus       184 ~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          184 ALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             EEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             EEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            9999999888 6666 543  67       999999999987 7777777899999999999998877665443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=6.7e-18  Score=151.12  Aligned_cols=223  Identities=22%  Similarity=0.240  Sum_probs=160.3

Q ss_pred             ccccCEEeCCCCCCCCCCC--CCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcE-EEccCcCCCCcchhhhh
Q 035693           75 LQYLQSLNLGFTLFYGFPM--PSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRE-LYLDNVDLSGRRTEWCK  151 (348)
Q Consensus        75 ~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~l~~~~~~~~~~~~~~  151 (348)
                      .++++.|++++|.++....  ...+++|++|++++|.+..      .++. ..+.+++++++ +.+.+|++....+   .
T Consensus        29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~------~i~~-~~f~~L~~l~~~l~~~~N~l~~l~~---~   98 (350)
T 4ay9_X           29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE------VIEA-DVFSNLPKLHEIRIEKANNLLYINP---E   98 (350)
T ss_dssp             CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC------EECT-TSBCSCTTCCEEEEEEETTCCEECT---T
T ss_pred             CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC------ccCh-hHhhcchhhhhhhcccCCcccccCc---h
Confidence            3578999999998887421  1278899999999997532      2221 23678888775 5556688877665   5


Q ss_pred             hhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCC-CCCEEEccCCcCCCcccccccCCC
Q 035693          152 AMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLL-NLTTLDLSQCDLHGKFPEKVLQVP  230 (348)
Q Consensus       152 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~~~  230 (348)
                      .+..+++|++|++++|.+....+..+....++..|++.++..+.......+..+. .++.|++++|.+. .++.......
T Consensus        99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~  177 (350)
T 4ay9_X           99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGT  177 (350)
T ss_dssp             SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTE
T ss_pred             hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhcccc
Confidence            6788999999999999988765556666778888888775444433334455554 6888999999987 5666666677


Q ss_pred             CccEEEccC-CCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeC
Q 035693          231 TLETLDLSY-NSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDF  309 (348)
Q Consensus       231 ~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l  309 (348)
                      +|+++++.+ |.+.......|..+++|++|++++|+++ .+|..  .+.+|+.|.+.++.-...+|. +..+++|+.+++
T Consensus       178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l  253 (350)
T 4ay9_X          178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASL  253 (350)
T ss_dssp             EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEEC
T ss_pred             chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcC
Confidence            899999975 5555445556788899999999999998 55542  356777777766655555664 678899999998


Q ss_pred             CCC
Q 035693          310 SSN  312 (348)
Q Consensus       310 ~~n  312 (348)
                      .++
T Consensus       254 ~~~  256 (350)
T 4ay9_X          254 TYP  256 (350)
T ss_dssp             SCH
T ss_pred             CCC
Confidence            763

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=7.1e-18  Score=146.96  Aligned_cols=192  Identities=20%  Similarity=0.230  Sum_probs=156.1

Q ss_pred             ccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhC
Q 035693           75 LQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS  154 (348)
Q Consensus        75 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  154 (348)
                      +..+..+.+..+.+.+......+++|++|++++|.+..       ++   .+..+++|+.|++++|++.+..+     +.
T Consensus        23 l~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-------~~---~~~~l~~L~~L~L~~n~l~~~~~-----l~   87 (291)
T 1h6t_A           23 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS-------VQ---GIQYLPNVTKLFLNGNKLTDIKP-----LA   87 (291)
T ss_dssp             HHHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCC-------CT---TGGGCTTCCEEECCSSCCCCCGG-----GT
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcccEEEccCCCccc-------Ch---hHhcCCCCCEEEccCCccCCCcc-----cc
Confidence            44455556777777664222379999999999998642       22   27889999999999999987653     78


Q ss_pred             CCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccE
Q 035693          155 FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLET  234 (348)
Q Consensus       155 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  234 (348)
                      .+++|++|++++|.+.+ ++ .+..+++|++|++++|....  + ..+..+++|++|++++|.+.+.  ..+..+++|+.
T Consensus        88 ~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~--~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~  160 (291)
T 1h6t_A           88 NLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDT  160 (291)
T ss_dssp             TCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC--C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred             cCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC--C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCE
Confidence            89999999999999987 33 48899999999999995433  2 5678899999999999999854  56889999999


Q ss_pred             EEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCC
Q 035693          235 LDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR  292 (348)
Q Consensus       235 L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~  292 (348)
                      |++++|.+....  .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++..
T Consensus       161 L~L~~N~l~~~~--~l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          161 LSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             EECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             EEccCCccccch--hhcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            999999875443  37789999999999999984 44 47889999999999999987

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=4.9e-18  Score=160.31  Aligned_cols=209  Identities=21%  Similarity=0.280  Sum_probs=125.8

Q ss_pred             CCCCCCCCCCc-----cccce-EeCCCCCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCc
Q 035693           28 MSQWSESTDCC-----DWNGV-DCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLV  101 (348)
Q Consensus        28 ~~~w~~~~~~~-----~~~~~-~c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~  101 (348)
                      +..|..+.+.|     .|.++ .|.. .+++.|+++++ .+.+ +|.  .+  +++|+.|++++|.++.  +|..+++|+
T Consensus        33 l~~W~~~~~~~~~~~~~~~~l~~C~~-~~L~~L~Ls~n-~L~~-lp~--~l--~~~L~~L~Ls~N~l~~--ip~~l~~L~  103 (571)
T 3cvr_A           33 WDKWEKQALPGENRNEAVSLLKECLI-NQFSELQLNRL-NLSS-LPD--NL--PPQITVLEITQNALIS--LPELPASLE  103 (571)
T ss_dssp             HHHHHTTCCTTCCHHHHHHHHHHHHH-TTCSEEECCSS-CCSC-CCS--CC--CTTCSEEECCSSCCSC--CCCCCTTCC
T ss_pred             HHHHhccCCccccccchhhhcccccc-CCccEEEeCCC-CCCc-cCH--hH--cCCCCEEECcCCCCcc--cccccCCCC
Confidence            55676677777     68888 6643 57899999998 7764 664  34  3778888888888875  446677777


Q ss_pred             EEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhcc
Q 035693          102 TLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLL  181 (348)
Q Consensus       102 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  181 (348)
                      +|++++|.++.       +|.   +.+  +|+.|++++|.++..+.       .+++|++|++++|.+++ +|.   .++
T Consensus       104 ~L~Ls~N~l~~-------ip~---l~~--~L~~L~Ls~N~l~~lp~-------~l~~L~~L~Ls~N~l~~-lp~---~l~  160 (571)
T 3cvr_A          104 YLDACDNRLST-------LPE---LPA--SLKHLDVDNNQLTMLPE-------LPALLEYINADNNQLTM-LPE---LPT  160 (571)
T ss_dssp             EEECCSSCCSC-------CCC---CCT--TCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSC-CCC---CCT
T ss_pred             EEEccCCCCCC-------cch---hhc--CCCEEECCCCcCCCCCC-------cCccccEEeCCCCccCc-CCC---cCC
Confidence            77777776531       222   111  66666666666655221       34556666666665554 332   234


Q ss_pred             CCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCC-----CCCC
Q 035693          182 SLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPK-----NSSL  256 (348)
Q Consensus       182 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-----~~~L  256 (348)
                      +|                         ++|++++|.+++ +|. +.  ++|+.|++++|.+..  ++.+..     .+.|
T Consensus       161 ~L-------------------------~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~--lp~~~~~L~~~~~~L  209 (571)
T 3cvr_A          161 SL-------------------------EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES--LPAVPVRNHHSEETE  209 (571)
T ss_dssp             TC-------------------------CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS--CCCCC--------CC
T ss_pred             Cc-------------------------CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc--hhhHHHhhhcccccc
Confidence            44                         445555544442 333 22  455555555555431  111222     1223


Q ss_pred             cEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccC
Q 035693          257 RNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMAN  300 (348)
Q Consensus       257 ~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~  300 (348)
                      +.|++++|.++ .+|..+..+++|+.|++++|.+.+.+|..+..
T Consensus       210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            77777777777 56776666778888888888887766655544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=6.4e-18  Score=161.07  Aligned_cols=193  Identities=21%  Similarity=0.334  Sum_probs=154.1

Q ss_pred             CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchH
Q 035693           96 SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINH  175 (348)
Q Consensus        96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  175 (348)
                      .+..+..+.+..+.+.          ....+..+++|+.|++++|.+....     .+..+++|++|++++|.+.+..+ 
T Consensus        19 ~l~~l~~l~l~~~~i~----------~~~~~~~L~~L~~L~l~~n~i~~l~-----~l~~l~~L~~L~Ls~N~l~~~~~-   82 (605)
T 1m9s_A           19 AFAETIKDNLKKKSVT----------DAVTQNELNSIDQIIANNSDIKSVQ-----GIQYLPNVTKLFLNGNKLTDIKP-   82 (605)
T ss_dssp             HHHHHHHHHTTCSCTT----------SEECHHHHTTCCCCBCTTCCCCCCT-----TGGGCTTCCEEECTTSCCCCCGG-
T ss_pred             HHHHHHHHhccCCCcc----------cccchhcCCCCCEEECcCCCCCCCh-----HHccCCCCCEEEeeCCCCCCChh-
Confidence            3445566666665542          1122567889999999999987653     47789999999999999988544 


Q ss_pred             HhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCC
Q 035693          176 HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSS  255 (348)
Q Consensus       176 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  255 (348)
                       +..+++|+.|+|++|.+..   ...+..+++|++|++++|.+.+ + +.+..+++|+.|++++|.+...  +.+..+++
T Consensus        83 -l~~l~~L~~L~Ls~N~l~~---l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~  154 (605)
T 1m9s_A           83 -LTNLKNLGWLFLDENKIKD---LSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTK  154 (605)
T ss_dssp             -GGGCTTCCEEECCSSCCCC---CTTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTT
T ss_pred             -hccCCCCCEEECcCCCCCC---ChhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCC
Confidence             8899999999999995432   2367889999999999999874 3 4578899999999999987543  66777899


Q ss_pred             CcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCC
Q 035693          256 LRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSD  316 (348)
Q Consensus       256 L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~  316 (348)
                      |+.|+|++|.+.+..+  +..+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|++.+
T Consensus       155 L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          155 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEEC
T ss_pred             CCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcC
Confidence            9999999999986544  7888999999999999988 43 57889999999999999876

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.73  E-value=2.3e-17  Score=147.67  Aligned_cols=225  Identities=20%  Similarity=0.139  Sum_probs=164.5

Q ss_pred             cEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcch-HHhhh
Q 035693          101 VTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPIN-HHLAN  179 (348)
Q Consensus       101 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~  179 (348)
                      ++++.+++.++       .+|..  +  .+++++|+|++|+++....   ..|.++++|++|++++|.+.+.++ .+|..
T Consensus        12 ~~v~C~~~~Lt-------~iP~~--l--~~~l~~L~Ls~N~i~~i~~---~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~   77 (350)
T 4ay9_X           12 RVFLCQESKVT-------EIPSD--L--PRNAIELRFVLTKLRVIQK---GAFSGFGDLEKIEISQNDVLEVIEADVFSN   77 (350)
T ss_dssp             TEEEEESTTCC-------SCCTT--C--CTTCSEEEEESCCCSEECT---TSSTTCTTCCEEEEECCTTCCEECTTSBCS
T ss_pred             CEEEecCCCCC-------ccCcC--c--CCCCCEEEccCCcCCCcCH---HHHcCCCCCCEEECcCCCCCCccChhHhhc
Confidence            57788877764       34543  2  3579999999999987765   468899999999999999876554 46788


Q ss_pred             ccCCCEE-EcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCC-CCCCCCCCCCCCC-CCC
Q 035693          180 LLSLSVI-RLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYN-SLLQGSLPHFPKN-SSL  256 (348)
Q Consensus       180 ~~~L~~L-~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~~~~~~~~-~~L  256 (348)
                      +++++++ .+..| .+....+..|..+++|++|++++|.+....+..+....++..+++.++ .+.......|... ..+
T Consensus        78 L~~l~~~l~~~~N-~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l  156 (350)
T 4ay9_X           78 LPKLHEIRIEKAN-NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES  156 (350)
T ss_dssp             CTTCCEEEEEEET-TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred             chhhhhhhcccCC-cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhh
Confidence            8888764 44555 445455677889999999999999998554445556677888988764 4444445556664 468


Q ss_pred             cEEEcccCCCCCCCCccccCCCCCCEEeecC-CccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecc
Q 035693          257 RNLNLKNTSFSGKLPDSIGNLENLASVDVSS-CNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLS  335 (348)
Q Consensus       257 ~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~  335 (348)
                      +.|++++|+++ .++.......+|+++.+.+ |.+....+.++..+++|++|++++|+++. +|...+   .+|+.|.+.
T Consensus       157 ~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~~~---~~L~~L~~l  231 (350)
T 4ay9_X          157 VILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSYGL---ENLKKLRAR  231 (350)
T ss_dssp             EEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCSSSC---TTCCEEECT
T ss_pred             hhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cChhhh---ccchHhhhc
Confidence            99999999998 4555444557899999975 56666444577889999999999999986 666543   567777766


Q ss_pred             cCcccccCCC
Q 035693          336 SNDLTGGISS  345 (348)
Q Consensus       336 ~n~l~g~ip~  345 (348)
                      ++.--..+|.
T Consensus       232 ~~~~l~~lP~  241 (350)
T 4ay9_X          232 STYNLKKLPT  241 (350)
T ss_dssp             TCTTCCCCCC
T ss_pred             cCCCcCcCCC
Confidence            6532236664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=3.5e-17  Score=155.95  Aligned_cols=194  Identities=20%  Similarity=0.215  Sum_probs=158.8

Q ss_pred             cccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhh
Q 035693           74 SLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAM  153 (348)
Q Consensus        74 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  153 (348)
                      .+..+..+.+..+.+.+......+++|+.|++++|.+.       .++   .+..+++|+.|+|++|++.+..+     +
T Consensus        19 ~l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~-------~l~---~l~~l~~L~~L~Ls~N~l~~~~~-----l   83 (605)
T 1m9s_A           19 AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-------SVQ---GIQYLPNVTKLFLNGNKLTDIKP-----L   83 (605)
T ss_dssp             HHHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCC-------CCT---TGGGCTTCCEEECTTSCCCCCGG-----G
T ss_pred             HHHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCC-------CCh---HHccCCCCCEEEeeCCCCCCChh-----h
Confidence            44556667777777776522228999999999999864       222   27889999999999999987654     7


Q ss_pred             CCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCcc
Q 035693          154 SFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLE  233 (348)
Q Consensus       154 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~  233 (348)
                      ..+++|++|++++|.+.+ ++ .+..+++|+.|++++|.+..   ...+..+++|+.|++++|.+.+.  ..+..+++|+
T Consensus        84 ~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~---l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~  156 (605)
T 1m9s_A           84 TNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD---INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD  156 (605)
T ss_dssp             GGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC---CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCS
T ss_pred             ccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC---CccccCCCccCEEECCCCccCCc--hhhcccCCCC
Confidence            889999999999999987 33 68889999999999995433   24588999999999999999854  5688999999


Q ss_pred             EEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCC
Q 035693          234 TLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRP  293 (348)
Q Consensus       234 ~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~  293 (348)
                      .|++++|.+.....  +..+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|++...
T Consensus       157 ~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          157 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred             EEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence            99999998754333  7789999999999999984 43 578899999999999999874

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=5.2e-17  Score=133.19  Aligned_cols=154  Identities=19%  Similarity=0.252  Sum_probs=107.5

Q ss_pred             hhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCc
Q 035693          178 ANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLR  257 (348)
Q Consensus       178 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~  257 (348)
                      ..+++|+.|++++|.+.  .++ .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+....+..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            45566777777776432  223 4666777777777777554  223566777888888888777655566777778888


Q ss_pred             EEEcccCCCCCCCCccccCCCCCCEEeecCCc-cCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeeccc
Q 035693          258 NLNLKNTSFSGKLPDSIGNLENLASVDVSSCN-FTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSS  336 (348)
Q Consensus       258 ~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~  336 (348)
                      +|++++|.+++..+..+..+++|++|++++|. +.. ++ .+..+++|+.|++++|++.+ ++  .+..+++|++|++++
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~--~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR--GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT--TGGGCSSCCEEEECB
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH--HhccCCCCCEEEeeC
Confidence            88888888876566777788888888888887 555 45 57778888888888888876 44  233457888888888


Q ss_pred             Ccccc
Q 035693          337 NDLTG  341 (348)
Q Consensus       337 n~l~g  341 (348)
                      |++.+
T Consensus       191 N~i~~  195 (197)
T 4ezg_A          191 QTIGG  195 (197)
T ss_dssp             C----
T ss_pred             cccCC
Confidence            88864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=2e-17  Score=135.61  Aligned_cols=152  Identities=14%  Similarity=0.214  Sum_probs=101.5

Q ss_pred             CCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEE
Q 035693          156 LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETL  235 (348)
Q Consensus       156 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  235 (348)
                      +++|++|++++|.+.. ++ .+..+++|++|++++|. ..  ....+..+++|++|++++|.+.+..+..+..+++|+.|
T Consensus        43 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~-~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIH-AT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCC-CS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             cCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCC-CC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            4566677777766664 34 46666777777777762 22  22356667777777777777765566667777777777


Q ss_pred             EccCCCCCCCCCCCCCCCCCCcEEEcccCC-CCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCcc
Q 035693          236 DLSYNSLLQGSLPHFPKNSSLRNLNLKNTS-FSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHF  314 (348)
Q Consensus       236 ~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~-~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l  314 (348)
                      ++++|.+....+..+..+++|++|++++|. +. .++ .+..+++|++|++++|.+.+ ++ .+..+++|+.|++++|++
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence            777777655445556667777777777776 54 444 56777888888888888876 33 567778888888888887


Q ss_pred             CC
Q 035693          315 SD  316 (348)
Q Consensus       315 ~~  316 (348)
                      .+
T Consensus       194 ~~  195 (197)
T 4ezg_A          194 GG  195 (197)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=7e-17  Score=134.72  Aligned_cols=152  Identities=15%  Similarity=0.128  Sum_probs=85.5

Q ss_pred             cEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEE
Q 035693          133 RELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLD  212 (348)
Q Consensus       133 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  212 (348)
                      +.+++++++++..+..    +  .++|++|++++|.+....+..+..+++|++|++++|. +....+..|.++++|++|+
T Consensus        14 ~~v~c~~~~l~~iP~~----l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~   86 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTN----L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLV   86 (220)
T ss_dssp             TEEECTTSCCSSCCSS----C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEE
T ss_pred             CEEEcCCCCcCcCCCc----c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEE
Confidence            5667777766655431    1  2567777777777766555556666666666666663 3333345555666666666


Q ss_pred             ccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccC
Q 035693          213 LSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFT  291 (348)
Q Consensus       213 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~  291 (348)
                      +++|.+....+..+..+++|+.|++++|.+.......|..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus        87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           87 LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            6666665332233455555666666665554444445555555555555555555443444555555555555555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=6.1e-17  Score=135.12  Aligned_cols=153  Identities=17%  Similarity=0.140  Sum_probs=101.2

Q ss_pred             cEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcch-HHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEE
Q 035693          133 RELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPIN-HHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTL  211 (348)
Q Consensus       133 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  211 (348)
                      +.++++++.++.++..    +  ...+++|++++|.+++..+ ..+..+++|++|++++|. ++...+..|..+++|++|
T Consensus        14 ~~l~~s~n~l~~iP~~----~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L   86 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEH----I--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEI   86 (220)
T ss_dssp             TEEECCSSCCSSCCSC----C--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred             CEeEeCCCCcccCccC----C--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEE
Confidence            5788888877765431    1  3456788888888776533 346677777777777773 333344466677777777


Q ss_pred             EccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccC
Q 035693          212 DLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFT  291 (348)
Q Consensus       212 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~  291 (348)
                      ++++|.+.+..+..+..+++|++|++++|.+.......|..+++|++|++++|.+++..|..+..+++|+.|++++|++.
T Consensus        87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            77777776555555666777777777777665555556666667777777777766555666666666777777776665


Q ss_pred             C
Q 035693          292 R  292 (348)
Q Consensus       292 ~  292 (348)
                      .
T Consensus       167 c  167 (220)
T 2v70_A          167 C  167 (220)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.71  E-value=6.3e-17  Score=145.36  Aligned_cols=178  Identities=24%  Similarity=0.203  Sum_probs=140.5

Q ss_pred             CcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhh-hccCCCEEEcccCCCCCCChhhhhhcCCCCCE
Q 035693          132 LRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLA-NLLSLSVIRLRDNHAVSCQVPEFVANLLNLTT  210 (348)
Q Consensus       132 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  210 (348)
                      -+.++++++++...+..      -...+++|++++|.+++..+..+. .+++|++|++++|. +....+..|..+++|++
T Consensus        20 ~~~l~c~~~~l~~iP~~------~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~   92 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQS------LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRY   92 (361)
T ss_dssp             TTEEECCSSCCSSCCSS------CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred             CCEEEeCCCCcCccCcc------CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCE
Confidence            36889999988776532      234689999999999886666676 88999999999984 44445567888999999


Q ss_pred             EEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCc-cc---cCCCCCCEEeec
Q 035693          211 LDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPD-SI---GNLENLASVDVS  286 (348)
Q Consensus       211 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~-~l---~~~~~L~~L~L~  286 (348)
                      |++++|.+....+..+..+++|+.|++++|.+.......|..+++|+.|++++|.+++ +|. .+   ..+++|+.|+|+
T Consensus        93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~  171 (361)
T 2xot_A           93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLS  171 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECC
T ss_pred             EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECC
Confidence            9999999886555668889999999999998877667778888999999999999884 444 33   567899999999


Q ss_pred             CCccCCCCcccccCCCC--CCEEeCCCCccCCc
Q 035693          287 SCNFTRPIPTSMANLTQ--LFHLDFSSNHFSDP  317 (348)
Q Consensus       287 ~n~l~~~~~~~l~~~~~--L~~L~l~~n~l~~~  317 (348)
                      +|.+....+..+..++.  ++.|++++|++.++
T Consensus       172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             SSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             CCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence            99998855566666766  48899999998764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=2.9e-16  Score=131.87  Aligned_cols=136  Identities=21%  Similarity=0.240  Sum_probs=83.0

Q ss_pred             cCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEE
Q 035693          181 LSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLN  260 (348)
Q Consensus       181 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~  260 (348)
                      ++|++|++++| .+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.......|..+++|++|+
T Consensus        40 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            34455555544 22223334445555555555555555433333445566666666666665544444455666777777


Q ss_pred             cccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCcc
Q 035693          261 LKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPI  318 (348)
Q Consensus       261 ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~  318 (348)
                      +++|++. .+|..+..+++|++|++++|.+....+..+..+++|+.|++++|++.+..
T Consensus       119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            7777776 56666677777777777777777655556667777777777777776644

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=2.9e-16  Score=131.84  Aligned_cols=157  Identities=20%  Similarity=0.193  Sum_probs=129.1

Q ss_pred             CCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEc
Q 035693          182 SLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNL  261 (348)
Q Consensus       182 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  261 (348)
                      .-+.++++++...  .++..+  .++|++|++++|.+.+..+..+..+++|+.|++++|.+.......|..+++|++|++
T Consensus        20 s~~~v~c~~~~l~--~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           20 SGTTVDCRSKRHA--SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             ETTEEECTTSCCS--SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             eCCEeEccCCCcC--ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            3556777665322  233322  378999999999999777888999999999999999986666666788999999999


Q ss_pred             ccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccc
Q 035693          262 KNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG  341 (348)
Q Consensus       262 s~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g  341 (348)
                      ++|.+++..+..+..+++|++|++++|.+.. +|..+..+++|+.|++++|++.+ ++...+..+++|+.|++++|++++
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCCccC
Confidence            9999996666677889999999999999996 78888999999999999999987 555555566899999999999986


Q ss_pred             cCC
Q 035693          342 GIS  344 (348)
Q Consensus       342 ~ip  344 (348)
                      ..+
T Consensus       174 ~c~  176 (229)
T 3e6j_A          174 ECR  176 (229)
T ss_dssp             TBG
T ss_pred             Ccc
Confidence            543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=8.7e-17  Score=144.45  Aligned_cols=178  Identities=19%  Similarity=0.120  Sum_probs=143.3

Q ss_pred             CcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhC-CCCCCcEEEccCccCCCcchHHhh
Q 035693          100 LVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS-FLPNLQVLNLSNCLLSDPINHHLA  178 (348)
Q Consensus       100 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~  178 (348)
                      -+.++++++.+.       .+|..  +  .+.++.|++++|+++...+   ..+. .+++|++|++++|.++...+..+.
T Consensus        20 ~~~l~c~~~~l~-------~iP~~--~--~~~l~~L~Ls~N~l~~l~~---~~~~~~l~~L~~L~L~~N~i~~i~~~~~~   85 (361)
T 2xot_A           20 SNILSCSKQQLP-------NVPQS--L--PSYTALLDLSHNNLSRLRA---EWTPTRLTNLHSLLLSHNHLNFISSEAFV   85 (361)
T ss_dssp             TTEEECCSSCCS-------SCCSS--C--CTTCSEEECCSSCCCEECT---TSSSSCCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CCEEEeCCCCcC-------ccCcc--C--CCCCCEEECCCCCCCccCh---hhhhhcccccCEEECCCCcCCccChhhcc
Confidence            468999988764       34432  2  2468999999999987765   3455 899999999999999987778899


Q ss_pred             hccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCC---CCCCC
Q 035693          179 NLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHF---PKNSS  255 (348)
Q Consensus       179 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~---~~~~~  255 (348)
                      .+++|++|++++|. +....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+.......+   ..+++
T Consensus        86 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~  164 (361)
T 2xot_A           86 PVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK  164 (361)
T ss_dssp             TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT
T ss_pred             CCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc
Confidence            99999999999995 444455678899999999999999987767889999999999999999876555555   45889


Q ss_pred             CcEEEcccCCCCCCCCccccCCCC--CCEEeecCCccCC
Q 035693          256 LRNLNLKNTSFSGKLPDSIGNLEN--LASVDVSSCNFTR  292 (348)
Q Consensus       256 L~~L~ls~n~~~~~~~~~l~~~~~--L~~L~L~~n~l~~  292 (348)
                      |+.|++++|.+++..+..+..++.  ++.|++++|++..
T Consensus       165 L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            999999999998544456666666  4889999999874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.70  E-value=2.6e-16  Score=131.29  Aligned_cols=155  Identities=19%  Similarity=0.220  Sum_probs=132.4

Q ss_pred             CcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEcc
Q 035693          159 LQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLS  238 (348)
Q Consensus       159 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  238 (348)
                      -+.++++++.++. +|..+.  ++|+.|++++|. +....+..+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus        13 ~~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           13 NNIVDCRGKGLTE-IPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TTEEECTTSCCSS-CCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CCEEEcCCCCcCc-CCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            3678888888876 454433  689999999994 444455578889999999999999987778889999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCc
Q 035693          239 YNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDP  317 (348)
Q Consensus       239 ~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~  317 (348)
                      +|.+.......|..+++|++|++++|.+.+..+..+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|++.+.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            9998766666678899999999999999977788899999999999999999997777788899999999999999764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.69  E-value=5.6e-16  Score=129.23  Aligned_cols=112  Identities=21%  Similarity=0.298  Sum_probs=55.6

Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL  205 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l  205 (348)
                      +.++++|+.|++++|+++...+   ..+..+++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+
T Consensus        53 ~~~l~~L~~L~L~~N~i~~i~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l  128 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKITDIEE---GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGL  128 (220)
T ss_dssp             GGGCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTC
T ss_pred             hccCCCCCEEECCCCcCCEECH---HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCC
Confidence            4555566666666665554443   345555556666666655555444445555555555555552 222233344444


Q ss_pred             CCCCEEEccCCcCCCcccccccCCCCccEEEccCCC
Q 035693          206 LNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNS  241 (348)
Q Consensus       206 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  241 (348)
                      ++|++|++++|.+.+..|..+..+++|+.|++++|+
T Consensus       129 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            445555555544443334444444444444444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=7.2e-17  Score=138.44  Aligned_cols=171  Identities=20%  Similarity=0.282  Sum_probs=116.4

Q ss_pred             CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchH
Q 035693           96 SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINH  175 (348)
Q Consensus        96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  175 (348)
                      .+.++..++++++.++.       ++   .+..+++|+.|++++|++....     .+..+++|++|++++|.+++..+ 
T Consensus        17 ~l~~l~~l~l~~~~i~~-------~~---~~~~l~~L~~L~l~~n~i~~l~-----~l~~l~~L~~L~L~~N~i~~~~~-   80 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD-------LV---SQKELSGVQNFNGDNSNIQSLA-----GMQFFTNLKELHLSHNQISDLSP-   80 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS-------EE---CHHHHTTCSEEECTTSCCCCCT-----TGGGCTTCCEEECCSSCCCCCGG-
T ss_pred             HHHHHHHHHhcCCCccc-------cc---chhhcCcCcEEECcCCCcccch-----HHhhCCCCCEEECCCCccCCChh-
Confidence            45566777777776531       11   2567778888888888776543     35667888888888888777443 


Q ss_pred             HhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCC
Q 035693          176 HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSS  255 (348)
Q Consensus       176 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  255 (348)
                       +..+++|++|++++|....  ++. +.. ++|++|++++|.+.+ . +.+..+++|+.|++++|.+...  +.+..+++
T Consensus        81 -l~~l~~L~~L~L~~N~l~~--l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~  151 (263)
T 1xeu_A           81 -LKDLTKLEELSVNRNRLKN--LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI--VMLGFLSK  151 (263)
T ss_dssp             -GTTCSSCCEEECCSSCCSC--CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC--GGGGGCTT
T ss_pred             -hccCCCCCEEECCCCccCC--cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC--hHHccCCC
Confidence             7777888888888874332  222 222 678888888887764 3 3467777888888888776443  35566777


Q ss_pred             CcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCC
Q 035693          256 LRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRP  293 (348)
Q Consensus       256 L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~  293 (348)
                      |++|++++|.+.+.  ..+..+++|+.|++++|++...
T Consensus       152 L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          152 LEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            88888888877744  4566777788888888777663

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=3.4e-16  Score=134.21  Aligned_cols=171  Identities=17%  Similarity=0.240  Sum_probs=134.6

Q ss_pred             CCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCC
Q 035693          128 NLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLN  207 (348)
Q Consensus       128 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~  207 (348)
                      ++.++..++++++.+++..     .+..+++|++|++++|.+.. ++ .+..+++|++|++++|. +... +. +..+++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-----~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~-i~~~-~~-l~~l~~   86 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-----SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQ-ISDL-SP-LKDLTK   86 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-----CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSC-CCCC-GG-GTTCSS
T ss_pred             HHHHHHHHHhcCCCccccc-----chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCc-cCCC-hh-hccCCC
Confidence            4556777888888887654     25567889999999998886 44 67888999999999984 3433 33 788999


Q ss_pred             CCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecC
Q 035693          208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSS  287 (348)
Q Consensus       208 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~  287 (348)
                      |++|++++|.+.+ ++.. .. ++|+.|++++|.+..  .+.+..+++|+.|++++|++++ ++ .+..+++|+.|++++
T Consensus        87 L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~--~~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~  159 (263)
T 1xeu_A           87 LEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHG  159 (263)
T ss_dssp             CCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB--SGGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTT
T ss_pred             CCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC--ChhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCC
Confidence            9999999998874 4432 23 889999999998754  3567778899999999999884 34 677888999999999


Q ss_pred             CccCCCCcccccCCCCCCEEeCCCCccCCc
Q 035693          288 CNFTRPIPTSMANLTQLFHLDFSSNHFSDP  317 (348)
Q Consensus       288 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~  317 (348)
                      |.+.+.  ..+..+++|+.|++++|++.+.
T Consensus       160 N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          160 NEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             SCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            999885  5677888999999999998763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=4.7e-16  Score=124.04  Aligned_cols=138  Identities=20%  Similarity=0.258  Sum_probs=113.5

Q ss_pred             CCCCCEEEccCCcCC-CcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEE
Q 035693          205 LLNLTTLDLSQCDLH-GKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASV  283 (348)
Q Consensus       205 l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L  283 (348)
                      .++|++|++++|.+. +.+|..+..+++|+.|++++|.+...  ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            467888888888886 56777778888999999999987544  777778999999999999986677777778999999


Q ss_pred             eecCCccCCCC-cccccCCCCCCEEeCCCCccCCccCc---hhhhhhcCCCeeecccCcccccCCCC
Q 035693          284 DVSSCNFTRPI-PTSMANLTQLFHLDFSSNHFSDPIPT---LRLYMSRNLNYLNLSSNDLTGGISSN  346 (348)
Q Consensus       284 ~L~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~l~~n~l~g~ip~~  346 (348)
                      ++++|.+.+.. +..+..+++|+.|++++|++.+ ++.   ..+..+++|++|++++|.++ ++|++
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            99999998832 2678889999999999999987 444   34555689999999999986 77764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=2.4e-17  Score=156.17  Aligned_cols=197  Identities=16%  Similarity=0.128  Sum_probs=121.8

Q ss_pred             cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCcc-------------CCCcchHHhhhccCCCEEE-cccCC
Q 035693          127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCL-------------LSDPINHHLANLLSLSVIR-LRDNH  192 (348)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~  192 (348)
                      ..+++|+.|++++|++..    ++..++++++|++|++++|.             ..+..|..+..+++|+.|+ ++.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~~----Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~  421 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTV----LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY  421 (567)
T ss_dssp             STTTTSSSCCCCHHHHHH----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred             ccCccceeccCChhhHHh----hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc
Confidence            345666667777666642    22455666666666665443             3444566677777777776 44331


Q ss_pred             CCCCChhh------hhhc--CCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccC
Q 035693          193 AVSCQVPE------FVAN--LLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNT  264 (348)
Q Consensus       193 ~~~~~~~~------~l~~--l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n  264 (348)
                      . . .+..      .+..  ...|+.|++++|.+++ +|. +..+++|+.|++++|.+. ..+..+..+++|+.|++++|
T Consensus       422 ~-~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N  496 (567)
T 1dce_A          422 L-D-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN  496 (567)
T ss_dssp             H-H-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS
T ss_pred             c-c-hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCC
Confidence            1 1 0000      1111  1257777777777763 555 677777777777777765 33345666777777777777


Q ss_pred             CCCCCCCccccCCCCCCEEeecCCccCCCC-cccccCCCCCCEEeCCCCccCCccCch--hhhhhcCCCeeec
Q 035693          265 SFSGKLPDSIGNLENLASVDVSSCNFTRPI-PTSMANLTQLFHLDFSSNHFSDPIPTL--RLYMSRNLNYLNL  334 (348)
Q Consensus       265 ~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~~--~~~~~~~L~~L~l  334 (348)
                      .+++ +| .++.+++|+.|++++|.+.+.. |..+..+++|+.|++++|++.+..+..  ....+++|+.|++
T Consensus       497 ~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          497 ALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            7774 55 6777777777888777777754 777777777788888877776643322  2333467777754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.61  E-value=4.3e-16  Score=151.98  Aligned_cols=144  Identities=20%  Similarity=0.179  Sum_probs=81.0

Q ss_pred             hhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCC
Q 035693          199 PEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLE  278 (348)
Q Consensus       199 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~  278 (348)
                      +..+..++.|+.|++++|.+. .++..+..+++|+.|+|++|.+. ..+..+..+++|++|+|++|.++ .+|..++.++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence            344555566666666666655 45555556666666666666554 22233455666666666666666 5566666666


Q ss_pred             CCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCC
Q 035693          279 NLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSN  346 (348)
Q Consensus       279 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~  346 (348)
                      +|++|+|++|.+.. +|..+..+++|+.|+|++|++.+.+|..+......+..+++++|.++|.+|..
T Consensus       294 ~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~  360 (727)
T 4b8c_D          294 QLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE  360 (727)
T ss_dssp             TCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             CCCEEECCCCCCCc-cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence            66666666666654 55556666666666666666666555443332122234556666666666553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=3.7e-15  Score=116.35  Aligned_cols=129  Identities=20%  Similarity=0.229  Sum_probs=107.4

Q ss_pred             CCCCCEEEccCCcCC-CcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEE
Q 035693          205 LLNLTTLDLSQCDLH-GKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASV  283 (348)
Q Consensus       205 l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L  283 (348)
                      .+++++|++++|.+. +.+|..+..+++|+.|++++|.+...  ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            467889999999887 57777788889999999999987554  777788999999999999986678777778999999


Q ss_pred             eecCCccCCC-CcccccCCCCCCEEeCCCCccCCccCc---hhhhhhcCCCeeeccc
Q 035693          284 DVSSCNFTRP-IPTSMANLTQLFHLDFSSNHFSDPIPT---LRLYMSRNLNYLNLSS  336 (348)
Q Consensus       284 ~L~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~l~~  336 (348)
                      ++++|.+.+. .+..+..+++|++|++++|++.+ ++.   ..+..+++|++|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCCC
Confidence            9999999883 34778899999999999999987 444   3455568999999864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.60  E-value=6.2e-15  Score=120.18  Aligned_cols=134  Identities=19%  Similarity=0.233  Sum_probs=110.4

Q ss_pred             CCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccc-cccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEc
Q 035693          183 LSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPE-KVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNL  261 (348)
Q Consensus       183 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  261 (348)
                      -+.++++++.. . .++..+.  ..+++|++++|.+....+. .+..+++|++|++++|.+.......|..+++|++|++
T Consensus        10 ~~~l~~s~~~l-~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           10 GTTVDCTGRGL-K-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCC-S-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEcCCCCc-C-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            37889988844 2 3444332  3899999999998854443 3788999999999999987776778888999999999


Q ss_pred             ccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCc
Q 035693          262 KNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPT  320 (348)
Q Consensus       262 s~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~  320 (348)
                      ++|++++..+..+..+++|++|++++|++.+..|..+..+++|+.|++++|++.+..+.
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            99999877777788899999999999999998888888999999999999999886553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=2e-16  Score=140.33  Aligned_cols=242  Identities=13%  Similarity=0.071  Sum_probs=146.0

Q ss_pred             ccccCEEeCCCCCCCCCCCCC-CCCCCcEEecCCCCCCCCcceeecCCChhhhcC--------CCCCcEEEccCcCCCCc
Q 035693           75 LQYLQSLNLGFTLFYGFPMPS-SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN--------LTELRELYLDNVDLSGR  145 (348)
Q Consensus        75 ~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~--------l~~L~~L~l~~~~~~~~  145 (348)
                      +++|+.|+|++|.+....... .++.++.+.+..+.          ++. ..|.+        |++|+.+++.+ .+..+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~----------I~~-~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I  115 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF----------VPA-YAFSNVVNGVTKGKQTLEKVILSE-KIKNI  115 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE----------ECT-TTTEEEETTEEEECTTCCC-CBCT-TCCEE
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccc----------cCH-HHhcccccccccccCCCcEEECCc-cccch
Confidence            566777777777666211111 22223333333332          111 22455        88888888877 66665


Q ss_pred             chhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCC---CCCChhhhhhcCCCCC-------------
Q 035693          146 RTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHA---VSCQVPEFVANLLNLT-------------  209 (348)
Q Consensus       146 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~~l~~l~~L~-------------  209 (348)
                      ..   .+|.++++|++|++..|.+....+.+|..+.++..+.......   ........|.++..|+             
T Consensus       116 ~~---~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~  192 (329)
T 3sb4_A          116 ED---AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLED  192 (329)
T ss_dssp             CT---TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHH
T ss_pred             hH---HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHH
Confidence            54   5677788888888888877665566666666555555443100   0000111122333333             


Q ss_pred             -------------EEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccC
Q 035693          210 -------------TLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGN  276 (348)
Q Consensus       210 -------------~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~  276 (348)
                                   .+.+.+.-...........+++|+.+++.+|++.......|..+.+|+++++.+| +......+|..
T Consensus       193 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~  271 (329)
T 3sb4_A          193 EIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSN  271 (329)
T ss_dssp             HHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             HHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhC
Confidence                         3333322111011011113678888888888777777777888888888888887 55444567788


Q ss_pred             CCCCC-EEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeec
Q 035693          277 LENLA-SVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNL  334 (348)
Q Consensus       277 ~~~L~-~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l  334 (348)
                      +.+|+ .+.+.+ .+..+.+.++.++++|+.+++.+|.+.. ++...+..+++|+.++.
T Consensus       272 ~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~-I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          272 CGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT-LGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE-ECTTTTCTTCCCCEEEC
T ss_pred             ChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc-cchhhhcCCcchhhhcc
Confidence            88888 888887 6777666788888888888888888865 66666667788887763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=3e-17  Score=155.53  Aligned_cols=185  Identities=19%  Similarity=0.202  Sum_probs=145.7

Q ss_pred             hCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCC------------CCCChhhhhhcCCCCCEEE-ccCCcCC
Q 035693          153 MSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHA------------VSCQVPEFVANLLNLTTLD-LSQCDLH  219 (348)
Q Consensus       153 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------~~~~~~~~l~~l~~L~~L~-l~~~~~~  219 (348)
                      +..+++|+.|++++|.+.. +|..+..+++|+.|++.+|..            ..+..+..+..+++|+.|+ ++.+.+.
T Consensus       345 ~~~~~~L~~L~Ls~n~L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          345 SATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             CSTTTTSSSCCCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             cccCccceeccCChhhHHh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            3568899999999999875 899999999999999866520            2334566777778888887 4544322


Q ss_pred             Ccccc------ccc--CCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccC
Q 035693          220 GKFPE------KVL--QVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFT  291 (348)
Q Consensus       220 ~~~~~------~l~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~  291 (348)
                       .++.      .+.  ....|+.|++++|.+..  ++.+..+++|+.|++++|.++ .+|..++.+++|+.|+|++|.++
T Consensus       424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~--lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  499 (567)
T 1dce_A          424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE  499 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS--CCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             -hhhhhhhhcccccccCccCceEEEecCCCCCC--CcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence             1110      011  11358999999998754  455888999999999999999 88999999999999999999999


Q ss_pred             CCCcccccCCCCCCEEeCCCCccCCcc-CchhhhhhcCCCeeecccCcccccCCC
Q 035693          292 RPIPTSMANLTQLFHLDFSSNHFSDPI-PTLRLYMSRNLNYLNLSSNDLTGGISS  345 (348)
Q Consensus       292 ~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~L~~L~l~~n~l~g~ip~  345 (348)
                      + +| .+..+++|+.|++++|++.+.. |..+.. +++|+.|+|++|++++..|.
T Consensus       500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~-l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS-CPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG-CTTCCEEECTTSGGGGSSSC
T ss_pred             C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc-CCCCCEEEecCCcCCCCccH
Confidence            8 67 7899999999999999998854 665544 58999999999999976553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=3e-14  Score=114.52  Aligned_cols=134  Identities=20%  Similarity=0.158  Sum_probs=103.2

Q ss_pred             CCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEc
Q 035693          182 SLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNL  261 (348)
Q Consensus       182 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  261 (348)
                      ..+.++++++....  ++..  ..++|++|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|++|++
T Consensus         8 ~~~~l~~~~~~l~~--~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            8 SGTEIRCNSKGLTS--VPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             ETTEEECCSSCCSS--CCTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEecCCCCcc--CCCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence            35678888774332  3322  2368899999999888555556778899999999999876555556777889999999


Q ss_pred             ccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccC
Q 035693          262 KNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIP  319 (348)
Q Consensus       262 s~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~  319 (348)
                      ++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999886655667788899999999999987555566778899999999999887655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.58  E-value=1.3e-14  Score=118.23  Aligned_cols=132  Identities=23%  Similarity=0.288  Sum_probs=112.0

Q ss_pred             CcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChh-hhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEc
Q 035693          159 LQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVP-EFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDL  237 (348)
Q Consensus       159 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  237 (348)
                      -++++++++.++. +|..+.  .+|++|++++|.+ ....+ ..+..+++|++|++++|.+.+..|..+..+++|+.|++
T Consensus        10 ~~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           10 GTTVDCTGRGLKE-IPRDIP--LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEcCCCCcCc-CccCCC--CCCCEEECCCCcC-CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            3789999999876 565443  3899999999954 43333 34889999999999999999777888999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCC
Q 035693          238 SYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPI  294 (348)
Q Consensus       238 ~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~  294 (348)
                      ++|.+.......|..+++|++|++++|++++..|..+..+++|++|++++|.+....
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            999987777777888999999999999999777888999999999999999998643

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=4.3e-16  Score=151.96  Aligned_cols=190  Identities=23%  Similarity=0.186  Sum_probs=58.4

Q ss_pred             HHHHHHHHhhhCccCCCCCCcccCCCCCC-CCCCccccceEeCCCCCEEEEeCCCCccccccccCCcccccccccCEEeC
Q 035693            5 QKLLLIQMKNSFIFDVDSTPPAKMSQWSE-STDCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNL   83 (348)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l   83 (348)
                      +..+++.+..+..    +..|..-..|.. ......|.+..+.. .+++.|+|+++ .+.. .+.       ..|+.++|
T Consensus       133 ~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~l~L~~n-~~~~-~~~-------~~l~~l~L  198 (727)
T 4b8c_D          133 TKQALMEMADTLT----DSKTAKKQQPTGDSTPSGTATNSAVST-PLTPKIELFAN-GKDE-ANQ-------ALLQHKKL  198 (727)
T ss_dssp             CCHHHHHHHHHHH----HHHTTC---------------------------------------------------------
T ss_pred             chhhhhhhhhhcc----cccCcccCCCcCCCCccccCCCceecC-CccceEEeeCC-CCCc-chh-------hHhhcCcc
Confidence            3445555554421    112244455643 44556787777655 67899999888 5543 221       23444555


Q ss_pred             CCCCCCCCC-----------CCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhh
Q 035693           84 GFTLFYGFP-----------MPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA  152 (348)
Q Consensus        84 ~~~~~~~~~-----------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  152 (348)
                      +.+.+.+..           ....+++|+.|+|++|.+.       .++..  +.++++|++|+|++|.++..+    ..
T Consensus       199 s~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-------~l~~~--~~~l~~L~~L~Ls~N~l~~lp----~~  265 (727)
T 4b8c_D          199 SQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-------NISAN--IFKYDFLTRLYLNGNSLTELP----AE  265 (727)
T ss_dssp             -----------------------CCCCCCEEECTTSCCS-------CCCGG--GGGCCSCSCCBCTTSCCSCCC----GG
T ss_pred             CcccccCccccccceecChhhhccCCCCcEEECCCCCCC-------CCChh--hcCCCCCCEEEeeCCcCcccC----hh
Confidence            555444321           0114445555555555432       22222  334445555555555444222    23


Q ss_pred             hCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccc
Q 035693          153 MSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPE  224 (348)
Q Consensus       153 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  224 (348)
                      +..+++|++|+|++|.++. +|..+..+++|++|+|++|.+ . .++..|..+++|++|++++|.+.+..|.
T Consensus       266 ~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l-~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          266 IKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMV-T-TLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             GGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSSCC-C-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             hhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCCCC-C-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence            4444455555555555442 344444455555555554422 1 2333344445555555555554444333

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.55  E-value=4.7e-14  Score=112.35  Aligned_cols=133  Identities=23%  Similarity=0.212  Sum_probs=79.8

Q ss_pred             CCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHh
Q 035693           98 PRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHL  177 (348)
Q Consensus        98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  177 (348)
                      ++|++|++++|.+..     ..++..  +..+++|++|++++|.+...     ..+..+++|++|++++|.+.+.++..+
T Consensus        24 ~~L~~L~l~~n~l~~-----~~i~~~--~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~   91 (168)
T 2ell_A           24 AAVRELVLDNCKSND-----GKIEGL--TAEFVNLEFLSLINVGLISV-----SNLPKLPKLKKLELSENRIFGGLDMLA   91 (168)
T ss_dssp             TSCSEEECCSCBCBT-----TBCSSC--CGGGGGCCEEEEESSCCCCC-----SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred             ccCCEEECCCCCCCh-----hhHHHH--HHhCCCCCEEeCcCCCCCCh-----hhhccCCCCCEEECcCCcCchHHHHHH
Confidence            445555555554320     133333  56667777777777776654     245667777777777777766566666


Q ss_pred             hhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCccc---ccccCCCCccEEEccCCCC
Q 035693          178 ANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFP---EKVLQVPTLETLDLSYNSL  242 (348)
Q Consensus       178 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~l  242 (348)
                      ..+++|++|++++|..........+..+++|++|++++|.+.+..+   ..+..+++|+.|++++|.+
T Consensus        92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            6677777777777743221222556666777777777776663322   2566666777777766654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=3.6e-14  Score=110.65  Aligned_cols=107  Identities=25%  Similarity=0.259  Sum_probs=48.7

Q ss_pred             cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCC
Q 035693          127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLL  206 (348)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~  206 (348)
                      ..+++|+.|++++|.+...     ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.......+..+..++
T Consensus        39 ~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~  113 (149)
T 2je0_A           39 DEFEELEFLSTINVGLTSI-----ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLE  113 (149)
T ss_dssp             TTCTTCCEEECTTSCCCCC-----TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCT
T ss_pred             hhcCCCcEEECcCCCCCCc-----hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCC
Confidence            3444444444444444432     13444455555555555554444444444555555555555221111224444555


Q ss_pred             CCCEEEccCCcCCCccc---ccccCCCCccEEEcc
Q 035693          207 NLTTLDLSQCDLHGKFP---EKVLQVPTLETLDLS  238 (348)
Q Consensus       207 ~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~  238 (348)
                      +|++|++++|.+.+..+   ..+..+++|+.|+++
T Consensus       114 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          114 NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            55555555555543222   234445555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.53  E-value=8.6e-14  Score=113.43  Aligned_cols=131  Identities=19%  Similarity=0.225  Sum_probs=110.1

Q ss_pred             CCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcc
Q 035693          183 LSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLK  262 (348)
Q Consensus       183 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls  262 (348)
                      -+.++++++...  .++..+  .+.+++|++++|.+. .+|..+..+++|+.|++++|.+.......|..+++|++|+++
T Consensus        12 ~~~l~~~~~~l~--~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           12 DTVVRCSNKGLK--VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TTEEECTTSCCS--SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEcCCCCCC--cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence            367888887433  234333  358999999999998 777889999999999999999877777778889999999999


Q ss_pred             cCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCcc
Q 035693          263 NTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPI  318 (348)
Q Consensus       263 ~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~  318 (348)
                      +|.+++..+..+..+++|+.|+|++|.+....+..+..+++|+.|++++|++.+.-
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence            99999777778899999999999999999866667888999999999999997643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=4e-14  Score=113.66  Aligned_cols=133  Identities=17%  Similarity=0.200  Sum_probs=86.5

Q ss_pred             hcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCE
Q 035693          203 ANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLAS  282 (348)
Q Consensus       203 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~  282 (348)
                      ..+.+|++|++++|.+. .++......++|+.|++++|.+...  +.+..+++|++|++++|.+++..+..+..+++|++
T Consensus        16 ~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            34556777777777666 3333222233777777777766433  56666777777888777777433334467778888


Q ss_pred             EeecCCccCCCCcc--cccCCCCCCEEeCCCCccCCccCch---hhhhhcCCCeeecccCccc
Q 035693          283 VDVSSCNFTRPIPT--SMANLTQLFHLDFSSNHFSDPIPTL---RLYMSRNLNYLNLSSNDLT  340 (348)
Q Consensus       283 L~L~~n~l~~~~~~--~l~~~~~L~~L~l~~n~l~~~~~~~---~~~~~~~L~~L~l~~n~l~  340 (348)
                      |++++|.+.. ++.  .+..+++|+.|++++|++.. ++..   .+..+++|+.||+++|.+.
T Consensus        93 L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            8888887765 444  56677788888888888764 4543   3444577888888777653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=5e-14  Score=124.80  Aligned_cols=241  Identities=13%  Similarity=0.008  Sum_probs=148.6

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCC--------CCCCcEEecCCCCCCCCcceeecC
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSS--------LPRLVTLDLSSREPISGFSWRLEI  120 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~  120 (348)
                      ++|+.|+|++| .+.....   .-+.++.++.+.+..+.+... ....        |++|++|++.+ .++       .+
T Consensus        49 ~~L~~LdLs~n-~i~~~~~---~~~~~~~~~~~~~~~~~I~~~-aF~~~~~~~~~g~~~L~~l~L~~-~i~-------~I  115 (329)
T 3sb4_A           49 PSLKVLDISNA-EIKMYSG---KAGTYPNGKFYIYMANFVPAY-AFSNVVNGVTKGKQTLEKVILSE-KIK-------NI  115 (329)
T ss_dssp             TTCCEEEEEEE-EECCEEE---SSSSSGGGCCEEECTTEECTT-TTEEEETTEEEECTTCCC-CBCT-TCC-------EE
T ss_pred             ccCeEEecCcc-eeEEecC---ccccccccccccccccccCHH-HhcccccccccccCCCcEEECCc-ccc-------ch
Confidence            67999999998 5541000   011122233344444433332 2223        56666666655 331       11


Q ss_pred             CChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccC--------------------------CCcch
Q 035693          121 PNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLL--------------------------SDPIN  174 (348)
Q Consensus       121 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------------------------~~~~~  174 (348)
                      + ...|.+|++|+.+++.++.+.....   ..|..+.++.++.......                          .+.++
T Consensus       116 ~-~~aF~~~~~L~~l~l~~n~i~~i~~---~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~  191 (329)
T 3sb4_A          116 E-DAAFKGCDNLKICQIRKKTAPNLLP---EALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLE  191 (329)
T ss_dssp             C-TTTTTTCTTCCEEEBCCSSCCEECT---TSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHH
T ss_pred             h-HHHhhcCcccceEEcCCCCccccch---hhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHH
Confidence            1 1235566666666666665554433   3344444444444333100                          01122


Q ss_pred             HHhh----hccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCC
Q 035693          175 HHLA----NLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHF  250 (348)
Q Consensus       175 ~~~~----~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~  250 (348)
                      ..+.    ...+++.+.+.+. ............+++|+.+++++|.+.......|..+++|+++++.++ +......+|
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF  269 (329)
T 3sb4_A          192 DEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVF  269 (329)
T ss_dssp             HHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred             HHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHh
Confidence            2111    2345666666654 222122222234889999999999888555556889999999999987 777777889


Q ss_pred             CCCCCCc-EEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeC
Q 035693          251 PKNSSLR-NLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDF  309 (348)
Q Consensus       251 ~~~~~L~-~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l  309 (348)
                      ..+.+|+ .+++.+ .++..-+.+|..+++|+.+++.+|.+..+.+.++.++++|+.+..
T Consensus       270 ~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          270 SNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             hCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            9999999 999988 666455678999999999999999999977889999999999874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.50  E-value=2.7e-13  Score=110.49  Aligned_cols=129  Identities=24%  Similarity=0.212  Sum_probs=109.1

Q ss_pred             CcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEcc
Q 035693          159 LQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLS  238 (348)
Q Consensus       159 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  238 (348)
                      -++++++++.++. +|..+  .++|++|++++|.+.  .++..+..+++|++|++++|.+....+..|..+++|++|+++
T Consensus        12 ~~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           12 DTVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence            3688999998886 55433  368999999999543  456788999999999999999987766778999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCC
Q 035693          239 YNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR  292 (348)
Q Consensus       239 ~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~  292 (348)
                      +|.+.......|..+++|++|++++|.++...+..+..+++|+.|++++|++..
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            999887777788889999999999999985555568889999999999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.49  E-value=5.8e-13  Score=106.93  Aligned_cols=131  Identities=18%  Similarity=0.144  Sum_probs=79.4

Q ss_pred             CcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEcc
Q 035693          159 LQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLS  238 (348)
Q Consensus       159 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  238 (348)
                      .+.++++++.+.. +|..+  .++|++|++++|. +....+..+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            4566666666655 33222  2567777777763 333334455666777777777777664444445666777777777


Q ss_pred             CCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCC
Q 035693          239 YNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRP  293 (348)
Q Consensus       239 ~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~  293 (348)
                      +|.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|++...
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            7766544444455666777777777776644333455666777777777776653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.47  E-value=4.1e-12  Score=115.18  Aligned_cols=200  Identities=11%  Similarity=0.100  Sum_probs=107.4

Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL  205 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l  205 (348)
                      |.+|++|+.+++.++.+.....   ..|. +.+|+++.+..+ +...-..+|..+.+|+.+.+..+ . +.....+|.+ 
T Consensus       176 F~~c~~L~~l~l~~n~l~~I~~---~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l-~~I~~~aF~~-  247 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTKITKLPA---STFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-V-STIGQEAFRE-  247 (401)
T ss_dssp             TTTCTTCCEEECTTSCCSEECT---TTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-C-CEECTTTTTT-
T ss_pred             hhCcccCCeeecCCCcceEech---hhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-c-cCcccccccc-
Confidence            5666666666666666655443   2233 456666666533 44444456666666666666654 2 2222334444 


Q ss_pred             CCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCC-----CCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCC
Q 035693          206 LNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLL-----QGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENL  280 (348)
Q Consensus       206 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L  280 (348)
                      .+|+.+.+.. .+.......|..+++|+.+.+.++.+.     ......|..+++|+.+.+.. .+...-..+|..+.+|
T Consensus       248 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L  325 (401)
T 4fdw_A          248 SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV  325 (401)
T ss_dssp             CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred             CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence            4666666633 233233445666666777766665432     23344555566666666663 3442334456666667


Q ss_pred             CEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhh-cCCCeeecccCc
Q 035693          281 ASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMS-RNLNYLNLSSND  338 (348)
Q Consensus       281 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~L~~L~l~~n~  338 (348)
                      +.+.+..+ +..+...++.++ +|+.+.+.+|.+.. ++...+..+ ..+..|.+..+.
T Consensus       326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~-l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ-VFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB-CCCSSCCCSCTTCCEEEECGGG
T ss_pred             cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc-cccccccCCCCCccEEEeCHHH
Confidence            77766443 444445556666 67777776665543 222222222 355566665543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.42  E-value=9e-12  Score=112.97  Aligned_cols=246  Identities=11%  Similarity=0.080  Sum_probs=179.1

Q ss_pred             ccccccCEEeCCCC--CCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhh
Q 035693           73 FSLQYLQSLNLGFT--LFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWC  150 (348)
Q Consensus        73 ~~~~~L~~L~l~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  150 (348)
                      ..+..++.+.+..+  .|... ...++ +|+.+.+..+ +.       .++. ..|.++ +|+.+.+.. .+.....   
T Consensus       110 ~~~~~l~~i~ip~~i~~I~~~-aF~~~-~L~~i~l~~~-i~-------~I~~-~aF~~~-~L~~i~lp~-~l~~I~~---  173 (401)
T 4fdw_A          110 EILKGYNEIILPNSVKSIPKD-AFRNS-QIAKVVLNEG-LK-------SIGD-MAFFNS-TVQEIVFPS-TLEQLKE---  173 (401)
T ss_dssp             EECSSCSEEECCTTCCEECTT-TTTTC-CCSEEECCTT-CC-------EECT-TTTTTC-CCCEEECCT-TCCEECS---
T ss_pred             EecCCccEEEECCccCEehHh-hcccC-CccEEEeCCC-cc-------EECH-HhcCCC-CceEEEeCC-CccEehH---
Confidence            44577888887653  22222 11144 7999998765 22       2222 235565 699999986 5655554   


Q ss_pred             hhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCC
Q 035693          151 KAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVP  230 (348)
Q Consensus       151 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~  230 (348)
                      ..|.++.+|+.+++..|.+......+|. +.+|+.+.+..+  .......+|.++++|+.+.+..+ +.......|.. .
T Consensus       174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~  248 (401)
T 4fdw_A          174 DIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-S  248 (401)
T ss_dssp             STTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-C
T ss_pred             HHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-C
Confidence            5688999999999999988875555565 689999999865  34345677889999999999875 33233334555 7


Q ss_pred             CccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCC-----CCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCC
Q 035693          231 TLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFS-----GKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLF  305 (348)
Q Consensus       231 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~-----~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~  305 (348)
                      +|+.+.+.++ +......+|..+++|+++.+.++.+.     .....+|..+++|+.+.+. +.+..+...++.++++|+
T Consensus       249 ~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          249 GITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCC
T ss_pred             CccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCcc
Confidence            8999999654 66667788999999999999988664     2334578889999999998 457776677888999999


Q ss_pred             EEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCC
Q 035693          306 HLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISS  345 (348)
Q Consensus       306 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~  345 (348)
                      .+.|..+ +.. +....+..+ +|+.+++.+|.+. .++.
T Consensus       327 ~l~lp~~-l~~-I~~~aF~~~-~L~~l~l~~n~~~-~l~~  362 (401)
T 4fdw_A          327 QLTIPAN-VTQ-INFSAFNNT-GIKEVKVEGTTPP-QVFE  362 (401)
T ss_dssp             EEEECTT-CCE-ECTTSSSSS-CCCEEEECCSSCC-BCCC
T ss_pred             EEEECcc-ccE-EcHHhCCCC-CCCEEEEcCCCCc-cccc
Confidence            9999765 443 666667777 9999999999775 4443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.40  E-value=1.6e-12  Score=104.30  Aligned_cols=130  Identities=21%  Similarity=0.229  Sum_probs=67.8

Q ss_pred             ccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcch
Q 035693           71 GLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRT  147 (348)
Q Consensus        71 ~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  147 (348)
                      .+.++++|+.|++++|.++..  +.   ..++|++|++++|.++.       + .  .+..+++|++|++++|.++..++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~l~~-------~-~--~l~~l~~L~~L~Ls~N~l~~~~~   81 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRK-------L-D--GFPLLRRLKTLLVNNNRICRIGE   81 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCE-------E-C--CCCCCSSCCEEECCSSCCCEECS
T ss_pred             hcCCcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCCCCc-------c-c--ccccCCCCCEEECCCCcccccCc
Confidence            455666777777777766653  22   23366666666665431       1 1  14555666666666666554432


Q ss_pred             hhhhhhCCCCCCcEEEccCccCCCcchH--HhhhccCCCEEEcccCCCCCCChhh----hhhcCCCCCEEEccCCcC
Q 035693          148 EWCKAMSFLPNLQVLNLSNCLLSDPINH--HLANLLSLSVIRLRDNHAVSCQVPE----FVANLLNLTTLDLSQCDL  218 (348)
Q Consensus       148 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~  218 (348)
                         ..+..+++|++|++++|.+.. ++.  .+..+++|+.|++++|+...  .+.    .+..+++|++|++++|..
T Consensus        82 ---~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~--~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           82 ---GLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN--KKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             ---CHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG--STTHHHHHHHHCTTCSEETTEECCH
T ss_pred             ---chhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC--cHhHHHHHHHHCCccceeCCCcCCH
Confidence               123445556666666665544 332  45555555555555553221  122    244555555555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.38  E-value=1.3e-14  Score=130.40  Aligned_cols=163  Identities=20%  Similarity=0.214  Sum_probs=83.2

Q ss_pred             CCCCcEEEccCcCCCCcchhhh-hhhC-CCCCCcEEEccCccCCCcchHHh-hhccCCCEEEcccCCCCCCChhhhh---
Q 035693          129 LTELRELYLDNVDLSGRRTEWC-KAMS-FLPNLQVLNLSNCLLSDPINHHL-ANLLSLSVIRLRDNHAVSCQVPEFV---  202 (348)
Q Consensus       129 l~~L~~L~l~~~~~~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l---  202 (348)
                      ++.|+.|++++|.++......+ ..+. ...+|++|++++|.+++.....+ ..+++|++|++++|.. .......+   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l-~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL-GPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC-CHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC-CHHHHHHHHHH
Confidence            3567777887777765433221 2222 23577777877777765433332 3445677777777733 32222222   


Q ss_pred             --hcCCCCCEEEccCCcCCC----cccccccCCCCccEEEccCCCCCCCCCC----CCCCCCCCcEEEcccCCCCCC---
Q 035693          203 --ANLLNLTTLDLSQCDLHG----KFPEKVLQVPTLETLDLSYNSLLQGSLP----HFPKNSSLRNLNLKNTSFSGK---  269 (348)
Q Consensus       203 --~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~L~~L~ls~n~~~~~---  269 (348)
                        ...+.|++|++++|.++.    .++..+...++|++|++++|.+......    .+...++|++|++++|.+++.   
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence              234567777777776653    2333344556666666666655432211    122234455555555554421   


Q ss_pred             -CCccccCCCCCCEEeecCCccCC
Q 035693          270 -LPDSIGNLENLASVDVSSCNFTR  292 (348)
Q Consensus       270 -~~~~l~~~~~L~~L~L~~n~l~~  292 (348)
                       +...+...++|++|+|++|.+.+
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCH
Confidence             11222233445555555555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.35  E-value=1.2e-11  Score=98.55  Aligned_cols=108  Identities=20%  Similarity=0.212  Sum_probs=82.3

Q ss_pred             CCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecC
Q 035693          208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSS  287 (348)
Q Consensus       208 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~  287 (348)
                      .+.++++++.+. .+|..+  .++|+.|++++|.+.......|..+++|++|++++|++++..+..+..+++|++|+|++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            567788887776 456544  36788888888887666666777788888888888888855555667788888888888


Q ss_pred             CccCCCCcccccCCCCCCEEeCCCCccCCcc
Q 035693          288 CNFTRPIPTSMANLTQLFHLDFSSNHFSDPI  318 (348)
Q Consensus       288 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~  318 (348)
                      |++.+..+..+..+++|+.|+|++|++.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            8888865666778888888888888887643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.33  E-value=6.3e-15  Score=120.78  Aligned_cols=83  Identities=20%  Similarity=0.185  Sum_probs=42.8

Q ss_pred             CCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCc-ccccCCCCCCEEeCCCCccCCccCc---------hhh
Q 035693          254 SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIP-TSMANLTQLFHLDFSSNHFSDPIPT---------LRL  323 (348)
Q Consensus       254 ~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~---------~~~  323 (348)
                      ++|++|++++|++++ ++ .+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|++.+..|.         ..+
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  170 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence            445555555555542 33 34455566666666666654211 2455566666666666666543322         123


Q ss_pred             hhhcCCCeeecccCccc
Q 035693          324 YMSRNLNYLNLSSNDLT  340 (348)
Q Consensus       324 ~~~~~L~~L~l~~n~l~  340 (348)
                      ..+++|+.||  ++.++
T Consensus       171 ~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          171 KRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHCSSCSEEC--CGGGT
T ss_pred             HhCCCcEEEC--CcccC
Confidence            3346666665  45554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.32  E-value=1.5e-11  Score=98.00  Aligned_cols=108  Identities=21%  Similarity=0.213  Sum_probs=90.2

Q ss_pred             ccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCC
Q 035693          232 LETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSS  311 (348)
Q Consensus       232 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~  311 (348)
                      .+.++++++.+.... ..+  .++|++|++++|.+++..+..+..+++|++|+|++|++.+..+..+..+++|++|+|++
T Consensus        11 ~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            578999999875432 223  37899999999999977788899999999999999999997777778999999999999


Q ss_pred             CccCCccCchhhhhhcCCCeeecccCcccccC
Q 035693          312 NHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGI  343 (348)
Q Consensus       312 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~i  343 (348)
                      |++.+ ++...+..+++|++|+|++|+++...
T Consensus        88 N~l~~-~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           88 NQLKS-IPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SCCCC-CCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CccCE-eCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            99987 55554555689999999999987543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.30  E-value=1.5e-14  Score=118.54  Aligned_cols=137  Identities=19%  Similarity=0.246  Sum_probs=103.7

Q ss_pred             hcCCCCCEEEccCCcCCCcccc------cccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccC
Q 035693          203 ANLLNLTTLDLSQCDLHGKFPE------KVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGN  276 (348)
Q Consensus       203 ~~l~~L~~L~l~~~~~~~~~~~------~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~  276 (348)
                      .....++.+++..+.+.+..|.      .+..+++|++|++++|.+..  ++.+..+++|++|++++|.+. .+|..+..
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~--l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~   91 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC--CCCHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc--ccccccCCCCCEEECCCCCcc-cccchhhc
Confidence            3444555555555555444333      67778888888888887654  345666788999999999888 67777777


Q ss_pred             CCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCc-hhhhhhcCCCeeecccCcccccCCC
Q 035693          277 LENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPT-LRLYMSRNLNYLNLSSNDLTGGISS  345 (348)
Q Consensus       277 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~g~ip~  345 (348)
                      +++|++|++++|.+.+ ++ .+..+++|+.|++++|++.+ ++. ..+..+++|++|++++|++++.+|.
T Consensus        92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            7899999999999998 55 57788999999999999986 333 2344558999999999999877654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.30  E-value=2.9e-11  Score=96.64  Aligned_cols=106  Identities=16%  Similarity=0.209  Sum_probs=71.2

Q ss_pred             CEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCC
Q 035693          209 TTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSC  288 (348)
Q Consensus       209 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n  288 (348)
                      +.++++++.+. .+|..+.  +.|+.|++++|.+.......|..+++|++|++++|++++..+..+..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            56667766665 5555443  56777777777765555556666777777777777777444444566777777777777


Q ss_pred             ccCCCCcccccCCCCCCEEeCCCCccCCc
Q 035693          289 NFTRPIPTSMANLTQLFHLDFSSNHFSDP  317 (348)
Q Consensus       289 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~  317 (348)
                      .+.+..+..+..+++|+.|++++|++...
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            77764444566777777777777777653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.28  E-value=1.3e-13  Score=123.89  Aligned_cols=185  Identities=16%  Similarity=0.172  Sum_probs=125.7

Q ss_pred             CCCCcEEEccCccCCCcchHHhhhc-----cCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccc----
Q 035693          156 LPNLQVLNLSNCLLSDPINHHLANL-----LSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKV----  226 (348)
Q Consensus       156 ~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l----  226 (348)
                      .+.|++|++++|.++......+...     ++|++|++++|.+...........+++|++|++++|.+.......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4679999999999987555554443     6899999999954332233334456689999999999875433333    


Q ss_pred             -cCCCCccEEEccCCCCCCCCCCCC----CCCCCCcEEEcccCCCCCC----CCccccCCCCCCEEeecCCccCCC----
Q 035693          227 -LQVPTLETLDLSYNSLLQGSLPHF----PKNSSLRNLNLKNTSFSGK----LPDSIGNLENLASVDVSSCNFTRP----  293 (348)
Q Consensus       227 -~~~~~L~~L~l~~~~l~~~~~~~~----~~~~~L~~L~ls~n~~~~~----~~~~l~~~~~L~~L~L~~n~l~~~----  293 (348)
                       ...++|++|++++|.+.......+    ...++|++|++++|.+.+.    +...+...++|++|+|++|.+++.    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             346789999999998765443333    4477899999999988642    244556678999999999999863    


Q ss_pred             CcccccCCCCCCEEeCCCCccCCccCchhhhhh-cC---CCeee--cccCccc
Q 035693          294 IPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMS-RN---LNYLN--LSSNDLT  340 (348)
Q Consensus       294 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~---L~~L~--l~~n~l~  340 (348)
                      ++..+...++|++|+|++|+|.+.....+.... ..   |+.+.  +..+.++
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            344455678999999999999764444332221 12   66666  6666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.28  E-value=3.7e-11  Score=96.02  Aligned_cols=106  Identities=23%  Similarity=0.240  Sum_probs=88.2

Q ss_pred             ccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCC
Q 035693          232 LETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSS  311 (348)
Q Consensus       232 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~  311 (348)
                      -+.++++++++... +..+.  ++|++|++++|.+.+..+..+..+++|+.|+|++|++.+..+..+..+++|+.|+|++
T Consensus        14 ~~~l~~~~n~l~~i-P~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASV-PAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSC-CSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCcc-CCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            36889999887433 22232  7899999999999977788899999999999999999996666678899999999999


Q ss_pred             CccCCccCchhhhhhcCCCeeecccCcccc
Q 035693          312 NHFSDPIPTLRLYMSRNLNYLNLSSNDLTG  341 (348)
Q Consensus       312 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g  341 (348)
                      |++.+ ++...+..+++|++|+|++|++..
T Consensus        91 N~l~~-l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHLKS-IPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCCC-CCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             Cccce-eCHHHhccccCCCEEEeCCCCccc
Confidence            99987 666555556899999999999874

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.09  E-value=4.5e-09  Score=95.20  Aligned_cols=271  Identities=13%  Similarity=0.046  Sum_probs=154.4

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCC--CCCCCCCCCcEEecCCC-------CCCCCcceeec
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGF--PMPSSLPRLVTLDLSSR-------EPISGFSWRLE  119 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~-------~~~~~~~~~~~  119 (348)
                      .+|+++.+..+  + ..+.. .++.++++|+.+++..+ ++..  .....|.+|+.+.+..+       .|.........
T Consensus        71 ~~L~~i~lp~~--i-~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~  145 (394)
T 4fs7_A           71 RKVTEIKIPST--V-REIGE-FAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEIT  145 (394)
T ss_dssp             TTEEEEECCTT--C-CEECT-TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEE
T ss_pred             CCceEEEeCCC--c-cCcch-hHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccc
Confidence            56888888643  2 23433 36788999999999654 2221  12226666666655432       11110001111


Q ss_pred             CC------ChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCC
Q 035693          120 IP------NFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHA  193 (348)
Q Consensus       120 ~~------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  193 (348)
                      .+      ....|.+|++|+.+.+.++- .....   ..+.++.+|+.+++..+ +......++..+..|+.+.+..+..
T Consensus       146 ~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~---~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~  220 (394)
T 4fs7_A          146 IPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHN---GLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY  220 (394)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECCTTC-CEECT---TTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred             cCccccccchhhhcccCCCcEEecCCcc-ceecc---ccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce
Confidence            11      11457889999999997653 32332   45778888998888765 4443445666666666666654411


Q ss_pred             CC--------------------CChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCC
Q 035693          194 VS--------------------CQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKN  253 (348)
Q Consensus       194 ~~--------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~  253 (348)
                      ..                    ......+..+..++.+.+..+... .....+..+..++.+......   .....|..+
T Consensus       221 ~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~  296 (394)
T 4fs7_A          221 YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI---VPEKTFYGC  296 (394)
T ss_dssp             EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE---ECTTTTTTC
T ss_pred             EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee---ecccccccc
Confidence            10                    011122333344444444333221 122233344444444443321   122345557


Q ss_pred             CCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeee
Q 035693          254 SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLN  333 (348)
Q Consensus       254 ~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  333 (348)
                      .+|+.+.+..+ +...-..+|..+.+|+.+++..+ +..+...++.++.+|+.+.+..+ +. .+....+..|++|+.++
T Consensus       297 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~  372 (394)
T 4fs7_A          297 SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVE  372 (394)
T ss_dssp             TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEE
T ss_pred             ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEE
Confidence            77888887654 44233456778888999888644 65555677888889999998776 43 36666677778899998


Q ss_pred             cccC
Q 035693          334 LSSN  337 (348)
Q Consensus       334 l~~n  337 (348)
                      +..+
T Consensus       373 lp~~  376 (394)
T 4fs7_A          373 LPKR  376 (394)
T ss_dssp             EEGG
T ss_pred             ECCC
Confidence            8764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.04  E-value=1.9e-10  Score=102.55  Aligned_cols=203  Identities=16%  Similarity=0.229  Sum_probs=110.6

Q ss_pred             CCCcEEEccCcCCCC-cc----hhhhhhhCCCCCCcEEEccCccCC---------CcchHHhhhccCCCEEEcccCCCCC
Q 035693          130 TELRELYLDNVDLSG-RR----TEWCKAMSFLPNLQVLNLSNCLLS---------DPINHHLANLLSLSVIRLRDNHAVS  195 (348)
Q Consensus       130 ~~L~~L~l~~~~~~~-~~----~~~~~~~~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~~  195 (348)
                      ..++.|.+....... ..    ..+..++..+++|+.|.+......         ..+...+..+|+|+.|.++++....
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~  186 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS  186 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence            356777777555331 11    122233445678888887654221         1244556677888888887762111


Q ss_pred             CChhhhhhcCCCCCEEEccCCcCCCccccccc--CCCCccEEEccCC--CCC-CCCC----CCC--CCCCCCcEEEcccC
Q 035693          196 CQVPEFVANLLNLTTLDLSQCDLHGKFPEKVL--QVPTLETLDLSYN--SLL-QGSL----PHF--PKNSSLRNLNLKNT  264 (348)
Q Consensus       196 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~l~-~~~~----~~~--~~~~~L~~L~ls~n  264 (348)
                        ++. + .+++|+.|++..+.+.......+.  .+++|++|+++.+  ... ...+    +.+  ..+++|+.|++.+|
T Consensus       187 --l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~  262 (362)
T 2ra8_A          187 --IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA  262 (362)
T ss_dssp             --CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred             --ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence              222 2 367788888877776543333332  5677888877531  111 1111    112  23677888888777


Q ss_pred             CCCCCCCccc---cCCCCCCEEeecCCccCCC----CcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccC
Q 035693          265 SFSGKLPDSI---GNLENLASVDVSSCNFTRP----IPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSN  337 (348)
Q Consensus       265 ~~~~~~~~~l---~~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n  337 (348)
                      .+....+..+   ..+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.+++.....+....  ...++++++
T Consensus       263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~  340 (362)
T 2ra8_A          263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDS  340 (362)
T ss_dssp             TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSB
T ss_pred             CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCC
Confidence            7653222222   2456778888877777653    233334467788888877777654333222211  245666665


Q ss_pred             c
Q 035693          338 D  338 (348)
Q Consensus       338 ~  338 (348)
                      +
T Consensus       341 ~  341 (362)
T 2ra8_A          341 Q  341 (362)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.02  E-value=1.3e-09  Score=96.95  Aligned_cols=103  Identities=18%  Similarity=0.180  Sum_probs=52.8

Q ss_pred             EEccCC-cCCCcccccccCCCCccEEEccC-CCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCC
Q 035693          211 LDLSQC-DLHGKFPEKVLQVPTLETLDLSY-NSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSC  288 (348)
Q Consensus       211 L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n  288 (348)
                      ++.+++ .+. .+|. +..+++|+.|+|++ |.+.......|..+++|+.|+|++|++++..+..|..+++|+.|+|++|
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            344444 444 3444 55555555555553 5444333344555555555555555555444445555555666666666


Q ss_pred             ccCCCCcccccCCCCCCEEeCCCCccCC
Q 035693          289 NFTRPIPTSMANLTQLFHLDFSSNHFSD  316 (348)
Q Consensus       289 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~  316 (348)
                      ++.+..+..+..++ |+.|+|.+|++..
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            55553333333333 5666666665554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.01  E-value=9.7e-10  Score=97.80  Aligned_cols=103  Identities=20%  Similarity=0.241  Sum_probs=86.2

Q ss_pred             EEEccCC-CCCCCCCCCCCCCCCCcEEEccc-CCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCC
Q 035693          234 TLDLSYN-SLLQGSLPHFPKNSSLRNLNLKN-TSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSS  311 (348)
Q Consensus       234 ~L~l~~~-~l~~~~~~~~~~~~~L~~L~ls~-n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~  311 (348)
                      .++.+++ ++..  ++.+..+.+|++|+|++ |.+.+..+..|..+++|+.|+|++|.+.+..+..+..+++|+.|+|++
T Consensus        12 ~v~~~~~n~l~~--ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDS--LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTT--TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCc--cCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4577776 6643  33377788999999996 999866667899999999999999999998888899999999999999


Q ss_pred             CccCCccCchhhhhhcCCCeeecccCccc
Q 035693          312 NHFSDPIPTLRLYMSRNLNYLNLSSNDLT  340 (348)
Q Consensus       312 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  340 (348)
                      |++.+ +|...+... .|+.|+|.+|.+.
T Consensus        90 N~l~~-~~~~~~~~~-~L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALES-LSWKTVQGL-SLQELVLSGNPLH  116 (347)
T ss_dssp             SCCSC-CCSTTTCSC-CCCEEECCSSCCC
T ss_pred             Cccce-eCHHHcccC-CceEEEeeCCCcc
Confidence            99987 666555553 4999999999886

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.00  E-value=4.2e-10  Score=100.31  Aligned_cols=40  Identities=10%  Similarity=0.286  Sum_probs=17.0

Q ss_pred             CCCCcEEEcccCCCCCC----CCccccCCCCCCEEeecCCccCC
Q 035693          253 NSSLRNLNLKNTSFSGK----LPDSIGNLENLASVDVSSCNFTR  292 (348)
Q Consensus       253 ~~~L~~L~ls~n~~~~~----~~~~l~~~~~L~~L~L~~n~l~~  292 (348)
                      +++|++|+++.|.+.+.    ++..+..+++|+.|++++|.+++
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            34455555555444321    11122233445555555554443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.89  E-value=7.6e-08  Score=87.10  Aligned_cols=250  Identities=13%  Similarity=0.108  Sum_probs=148.4

Q ss_pred             cccccccccCEEeCCCCCCCCCC--CCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCc-------
Q 035693           70 SGLFSLQYLQSLNLGFTLFYGFP--MPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNV-------  140 (348)
Q Consensus        70 ~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-------  140 (348)
                      .++.++.+|+.+.+..+ ++..+  .-.+|++|+.+++..+ +.       .++ ...+.+|+.|+.+.+..+       
T Consensus        65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-------~I~-~~aF~~c~~L~~i~~p~~l~~i~~~  134 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-------MIG-RCTFSGCYALKSILLPLMLKSIGVE  134 (394)
T ss_dssp             TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-------EEC-TTTTTTCTTCCCCCCCTTCCEECTT
T ss_pred             HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-------Ecc-chhhcccccchhhcccCceeeecce
Confidence            36888999999999754 44321  2338999999999754 11       111 122555555555544321       


Q ss_pred             --------------CCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCC
Q 035693          141 --------------DLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLL  206 (348)
Q Consensus       141 --------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~  206 (348)
                                    .......   .+|.++.+|+.+.+..+ +......++..+.+|+.+.+..+  ........+.++.
T Consensus       135 aF~~~~~~~~~~~~~~~~i~~---~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~  208 (394)
T 4fs7_A          135 AFKGCDFKEITIPEGVTVIGD---EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECI  208 (394)
T ss_dssp             TTTTCCCSEEECCTTCCEECT---TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCT
T ss_pred             eeecccccccccCccccccch---hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhcccc
Confidence                          0111111   45788999999999765 34445567888999999999876  2223345566777


Q ss_pred             CCCEEEccCCcCCC---------------------cccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCC
Q 035693          207 NLTTLDLSQCDLHG---------------------KFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTS  265 (348)
Q Consensus       207 ~L~~L~l~~~~~~~---------------------~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~  265 (348)
                      .|+.+.+..+...-                     .....+..+..++.+.+..+. .......|..+..++.+......
T Consensus       209 ~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~  287 (394)
T 4fs7_A          209 LLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI  287 (394)
T ss_dssp             TCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSE
T ss_pred             ccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCcee
Confidence            77766665442210                     001122333444444444331 22233334444455555443332


Q ss_pred             CCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCC
Q 035693          266 FSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGIS  344 (348)
Q Consensus       266 ~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip  344 (348)
                      +.   ...+..+.+|+.+.+..+ +..+...++.++++|+.++|..+ +. .+....+..|.+|+.+++..+ ++ .|+
T Consensus       288 i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~  358 (394)
T 4fs7_A          288 VP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LR-KIG  358 (394)
T ss_dssp             EC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CC-EEC
T ss_pred             ec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-cc-Eeh
Confidence            21   234566788898888654 55555667888999999999754 43 366667777899999999776 43 443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.88  E-value=1.2e-07  Score=85.74  Aligned_cols=107  Identities=15%  Similarity=0.220  Sum_probs=51.8

Q ss_pred             ccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCC
Q 035693          226 VLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLF  305 (348)
Q Consensus       226 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~  305 (348)
                      |..+..|+.+.+... .......+|..+..|+.+.+.. .++.....+|..+.+|+.+.+..+ ++.+...++.++.+|+
T Consensus       261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             eeecccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence            344455555555433 2223334444555555555542 232122334555556666665432 3333344555556666


Q ss_pred             EEeCCCCccCCccCchhhhhhcCCCeeecccC
Q 035693          306 HLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSN  337 (348)
Q Consensus       306 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n  337 (348)
                      .+.+..+ ++. +....+..|.+|+.+++.++
T Consensus       338 ~i~ip~s-v~~-I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          338 RIAIPSS-VTK-IPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             EEEECTT-CCB-CCGGGGTTCTTCCEEEESSC
T ss_pred             EEEECcc-cCE-EhHhHhhCCCCCCEEEECCc
Confidence            6666433 322 44444555556666665554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.76  E-value=1.7e-07  Score=84.82  Aligned_cols=132  Identities=14%  Similarity=0.235  Sum_probs=89.6

Q ss_pred             hhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCC
Q 035693          200 EFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLEN  279 (348)
Q Consensus       200 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~  279 (348)
                      .+|..+..|+.+.+..+... .....+..++.|+.+.+... +......+|..+.+|+++.+..+ ++.....+|..+.+
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ceeeecccccEEecccccce-ecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            34667777888887655432 33446778899999999754 56666778888999999999765 54344567889999


Q ss_pred             CCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcc
Q 035693          280 LASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDL  339 (348)
Q Consensus       280 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l  339 (348)
                      |+.+.+..+ +..+...++.++++|+.+++.++....    ..+..+.+|+.+.+..+.+
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~----~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW----NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH----HTCBCCCCC----------
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh----hhhhccCCCCEEEeCCCCE
Confidence            999999654 666667789999999999999876432    1223447899888877644

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.66  E-value=3.8e-08  Score=79.16  Aligned_cols=116  Identities=15%  Similarity=0.198  Sum_probs=52.2

Q ss_pred             hcCCCCCcEEEccCc-CCCCcch-hhhhhhCCCCCCcEEEccCccCCCc----chHHhhhccCCCEEEcccCCCCCC---
Q 035693          126 FQNLTELRELYLDNV-DLSGRRT-EWCKAMSFLPNLQVLNLSNCLLSDP----INHHLANLLSLSVIRLRDNHAVSC---  196 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~-~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~---  196 (348)
                      +...+.|++|+|++| .+.+... .+...+...++|++|++++|.+.+.    +...+...++|++|++++|.+...   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            444555555555555 5543222 1223344455555555555555432    223334445555555555532211   


Q ss_pred             ChhhhhhcCCCCCEEEc--cCCcCCCc----ccccccCCCCccEEEccCCC
Q 035693          197 QVPEFVANLLNLTTLDL--SQCDLHGK----FPEKVLQVPTLETLDLSYNS  241 (348)
Q Consensus       197 ~~~~~l~~l~~L~~L~l--~~~~~~~~----~~~~l~~~~~L~~L~l~~~~  241 (348)
                      .+...+...+.|++|++  ++|.+...    +.+.+...++|++|++++|.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            12233444445555555  44554421    22233333445555554444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.57  E-value=2.2e-08  Score=80.54  Aligned_cols=96  Identities=16%  Similarity=0.161  Sum_probs=61.5

Q ss_pred             hhhhhhCCCCCCcEEEccCc-cCCCc----chHHhhhccCCCEEEcccCCCCCC---ChhhhhhcCCCCCEEEccCCcCC
Q 035693          148 EWCKAMSFLPNLQVLNLSNC-LLSDP----INHHLANLLSLSVIRLRDNHAVSC---QVPEFVANLLNLTTLDLSQCDLH  219 (348)
Q Consensus       148 ~~~~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~  219 (348)
                      .+...+...+.|++|++++| .+.+.    +...+...++|++|++++|.+...   .+...+...+.|++|++++|.+.
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            34456777889999999998 87753    334555667888888888843221   13344556677888888888776


Q ss_pred             Cc----ccccccCCCCccEEEc--cCCCCC
Q 035693          220 GK----FPEKVLQVPTLETLDL--SYNSLL  243 (348)
Q Consensus       220 ~~----~~~~l~~~~~L~~L~l--~~~~l~  243 (348)
                      ..    +...+...+.|++|++  ++|.+.
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence            42    3344445555666666  445443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.53  E-value=4.1e-06  Score=75.16  Aligned_cols=107  Identities=11%  Similarity=0.132  Sum_probs=54.2

Q ss_pred             cccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCC
Q 035693          225 KVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQL  304 (348)
Q Consensus       225 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L  304 (348)
                      .+..+..|+.+.+..+ +.......|..+.+|+.+.+..+ +.......+..+.+|+.+.+.++.+..+...++.++.+|
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L  312 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL  312 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred             cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence            3444555666655443 33334444555555666655433 221222345555666666666555555444555566666


Q ss_pred             CEEeCCCCccCCccCchhhhhhcCCCeeecc
Q 035693          305 FHLDFSSNHFSDPIPTLRLYMSRNLNYLNLS  335 (348)
Q Consensus       305 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~  335 (348)
                      +.+.|..+ +. .+....+..|.+|+++.+.
T Consensus       313 ~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          313 SSVTLPTA-LK-TIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CEEECCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred             CEEEcCcc-cc-EEHHHHhhCCCCCCEEEEC
Confidence            66666443 22 2334444455555555553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.48  E-value=2.4e-07  Score=72.99  Aligned_cols=83  Identities=17%  Similarity=0.149  Sum_probs=34.4

Q ss_pred             CCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCcc-CCCcchHHhhhc----cCCCEEEcccCCCCCCChhhhhhcC
Q 035693          131 ELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCL-LSDPINHHLANL----LSLSVIRLRDNHAVSCQVPEFVANL  205 (348)
Q Consensus       131 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~l~~l  205 (348)
                      +|+.|++++|.+++...   ..+..+++|++|++++|. +++.-...+..+    ++|++|++++|..+++.....+..+
T Consensus        62 ~L~~LDLs~~~Itd~GL---~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGF---DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             CEEEEEEESCCCCGGGG---GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             eEeEEeCcCCCccHHHH---HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            34444444444433222   233444444444444442 333222233321    2444444444433333333344444


Q ss_pred             CCCCEEEccCC
Q 035693          206 LNLTTLDLSQC  216 (348)
Q Consensus       206 ~~L~~L~l~~~  216 (348)
                      ++|+.|++++|
T Consensus       139 ~~L~~L~L~~c  149 (176)
T 3e4g_A          139 RNLKYLFLSDL  149 (176)
T ss_dssp             TTCCEEEEESC
T ss_pred             CCCCEEECCCC
Confidence            44444444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.36  E-value=2.8e-07  Score=72.62  Aligned_cols=85  Identities=18%  Similarity=0.183  Sum_probs=62.9

Q ss_pred             CCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC----CCCCEEEccCCc-CCCcccccccCCCC
Q 035693          157 PNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL----LNLTTLDLSQCD-LHGKFPEKVLQVPT  231 (348)
Q Consensus       157 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l----~~L~~L~l~~~~-~~~~~~~~l~~~~~  231 (348)
                      ..|++|++++|.+++.-...+..+++|++|+|++|..+++.....+..+    ++|++|++++|. +++..-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            4688999999888876666778888999999998876776666666654    368888888875 55544445566777


Q ss_pred             ccEEEccCCC
Q 035693          232 LETLDLSYNS  241 (348)
Q Consensus       232 L~~L~l~~~~  241 (348)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            8888887775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.27  E-value=5.1e-07  Score=76.48  Aligned_cols=83  Identities=27%  Similarity=0.268  Sum_probs=46.0

Q ss_pred             CCCCCCcEEEccCccCCC--cchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCccc-------c
Q 035693          154 SFLPNLQVLNLSNCLLSD--PINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFP-------E  224 (348)
Q Consensus       154 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-------~  224 (348)
                      .++++|++|++++|.+++  .++..+..+++|+.|+|++|.+........+..+ +|++|++.+|.+.+..|       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            346677777777777665  2345556667777777777643322111222233 67777777776654333       1


Q ss_pred             cccCCCCccEEEc
Q 035693          225 KVLQVPTLETLDL  237 (348)
Q Consensus       225 ~l~~~~~L~~L~l  237 (348)
                      .+..+++|+.|+-
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            2445566666553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.20  E-value=8.8e-05  Score=66.39  Aligned_cols=146  Identities=12%  Similarity=0.080  Sum_probs=103.1

Q ss_pred             hHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCC
Q 035693          174 NHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKN  253 (348)
Q Consensus       174 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~  253 (348)
                      ...+..+.+|+.+.+..+  ........+.++..|+.+.+..+ +.......+..+.+|+.+.+..+ +.......|..+
T Consensus       210 ~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c  285 (379)
T 4h09_A          210 AYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGC  285 (379)
T ss_dssp             TTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTC
T ss_pred             ecccccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccc
Confidence            345566678888888664  22234456778888999988765 33233456777889999998755 555666778889


Q ss_pred             CCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhh
Q 035693          254 SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMS  326 (348)
Q Consensus       254 ~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~  326 (348)
                      .+|+.+.+.++.++..-..+|..+.+|+.+.+..+ +..+...++.++++|+.+.+..+ ++. +....+..+
T Consensus       286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~-I~~~aF~~c  355 (379)
T 4h09_A          286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITL-IESGAFEGS  355 (379)
T ss_dssp             TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE-ECTTTTTTS
T ss_pred             cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCE-EchhHhhCC
Confidence            99999999888777444567888899999999754 66555678888999999988654 332 444444454

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.19  E-value=2.3e-06  Score=72.45  Aligned_cols=79  Identities=18%  Similarity=0.198  Sum_probs=49.1

Q ss_pred             CCCCcEEEcccCCCCC--CCCccccCCCCCCEEeecCCccCCCCcccccCCC--CCCEEeCCCCccCCccCc------hh
Q 035693          253 NSSLRNLNLKNTSFSG--KLPDSIGNLENLASVDVSSCNFTRPIPTSMANLT--QLFHLDFSSNHFSDPIPT------LR  322 (348)
Q Consensus       253 ~~~L~~L~ls~n~~~~--~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~--~L~~L~l~~n~l~~~~~~------~~  322 (348)
                      ++.|++|+|++|.+.+  .++..+..+++|+.|+|++|.+.+.  ..+..+.  +|++|+|++|++.+.+|.      .+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            3456666666666654  2344555677777777777777763  2233333  788888888888765542      23


Q ss_pred             hhhhcCCCeee
Q 035693          323 LYMSRNLNYLN  333 (348)
Q Consensus       323 ~~~~~~L~~L~  333 (348)
                      ...+|+|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            44557777776

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.80  E-value=2.5e-06  Score=68.43  Aligned_cols=115  Identities=11%  Similarity=0.175  Sum_probs=58.7

Q ss_pred             hhhhcCCCCCEEEccCC-cCCC----cccccccCCCCccEEEccCCCCCCCCCCCCCC----CCCCcEEEcccCCCCCC-
Q 035693          200 EFVANLLNLTTLDLSQC-DLHG----KFPEKVLQVPTLETLDLSYNSLLQGSLPHFPK----NSSLRNLNLKNTSFSGK-  269 (348)
Q Consensus       200 ~~l~~l~~L~~L~l~~~-~~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~----~~~L~~L~ls~n~~~~~-  269 (348)
                      ..+.+-+.|++|+++++ .+..    .+.+.+..-+.|+.|+|++|.+.+.....+..    .+.|++|+|+.|.+... 
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            33445567777777764 5542    23445555566777777777665555444432    45566666666665421 


Q ss_pred             ---CCccccCCCCCCEEeecCCc---cCC----CCcccccCCCCCCEEeCCCCcc
Q 035693          270 ---LPDSIGNLENLASVDVSSCN---FTR----PIPTSMANLTQLFHLDFSSNHF  314 (348)
Q Consensus       270 ---~~~~l~~~~~L~~L~L~~n~---l~~----~~~~~l~~~~~L~~L~l~~n~l  314 (348)
                         +.+.+..-+.|++|+|++|.   +..    .+...+..-+.|..|+++.|.+
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence               12223333445555555432   221    1233334444555555554433

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.65  E-value=9.9e-05  Score=59.13  Aligned_cols=40  Identities=23%  Similarity=0.306  Sum_probs=16.8

Q ss_pred             hhCCCCCCcEEEccCccCCCc----chHHhhhccCCCEEEcccC
Q 035693          152 AMSFLPNLQVLNLSNCLLSDP----INHHLANLLSLSVIRLRDN  191 (348)
Q Consensus       152 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~  191 (348)
                      .+.....|++|+|++|.+.+.    +...+.....|++|+|++|
T Consensus        65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N  108 (197)
T 1pgv_A           65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN  108 (197)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred             HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence            334444444444444444321    2233333344444444444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.48  E-value=0.0074  Score=44.84  Aligned_cols=37  Identities=14%  Similarity=0.254  Sum_probs=18.4

Q ss_pred             CCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccC
Q 035693          255 SLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFT  291 (348)
Q Consensus       255 ~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~  291 (348)
                      +|++|+|++|+++..-+..|..+++|+.|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555555555555333334444555555555555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.40  E-value=0.0066  Score=45.14  Aligned_cols=59  Identities=14%  Similarity=0.195  Sum_probs=47.8

Q ss_pred             cEEEcccCCCC-CCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCc
Q 035693          257 RNLNLKNTSFS-GKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDP  317 (348)
Q Consensus       257 ~~L~ls~n~~~-~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~  317 (348)
                      ..++.+++.++ ..+|..+.  ++|++|+|++|.++...+..+..+++|+.|+|++|++..+
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd   70 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD   70 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence            47888888876 35665443  4799999999999997777888899999999999999753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	348
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.9 bits (177), Expect = 3e-15
 Identities = 67/319 (21%), Positives = 107/319 (33%), Gaps = 23/319 (7%)

Query: 1   CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCD--WNGVDCDEAG---HVIGLD 55
           C    K  L+Q+K           P  +S W  +TDCC+  W GV CD       V  LD
Sbjct: 3   CNPQDKQALLQIKKDL------GNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLD 56

Query: 56  LSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFS 115
           LS    L       S L +L YL  L +G       P+P ++ +L  L            
Sbjct: 57  LSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH--------YLY 107

Query: 116 WRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINH 175
                 +      L++++ L   +   +        ++S LPNL  +      +S  I  
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 176 HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETL 235
              +   L        + ++ ++P   ANL                         T +  
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 236 DLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIP 295
               +           KN +  +L   N    G LP  +  L+ L S++VS  N    IP
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLR--NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 296 TSMANLTQLFHLDFSSNHF 314
               NL +     +++N  
Sbjct: 286 -QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 52/222 (23%), Positives = 85/222 (38%), Gaps = 24/222 (10%)

Query: 150 CKAMSFLPNLQVLNLSNCLLS--DPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLN 207
           C   +    +  L+LS   L    PI   LANL  L+ + +   + +   +P  +A L  
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFS 267
           L  L ++  ++ G  P+ + Q+ TL TLD SYN+L     P      +L  +       S
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 268 GKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFS------------ 315
           G +PDS G+   L +    S N              L  +D S N               
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 316 ----------DPIPTLRLYMSRNLNYLNLSSNDLTGGISSNI 347
                           ++ +S+NLN L+L +N + G +   +
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.3 bits (150), Expect = 2e-11
 Identities = 42/185 (22%), Positives = 67/185 (36%), Gaps = 16/185 (8%)

Query: 153 MSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLD 212
           +  L NL  L+L+   L D     LA+L +L+ + L +N          ++ L  LT L 
Sbjct: 215 LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELK 269

Query: 213 LSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPD 272
           L    +    P   L   T        N      +       +L  L L   + S   P 
Sbjct: 270 LGANQISNISPLAGLTALTNL----ELNENQLEDISPISNLKNLTYLTLYFNNISDISP- 324

Query: 273 SIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYL 332
            + +L  L  +  ++   +    +S+ANLT +  L    N  SD  P   L     +  L
Sbjct: 325 -VSSLTKLQRLFFANNKVS--DVSSLANLTNINWLSAGHNQISDLTPLANL---TRITQL 378

Query: 333 NLSSN 337
            L+  
Sbjct: 379 GLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 7e-08
 Identities = 49/298 (16%), Positives = 98/298 (32%), Gaps = 30/298 (10%)

Query: 65  SLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFN 124
            +++  G+  L  L  +N             +L +LV + +++ +               
Sbjct: 55  GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTG 114

Query: 125 FFQNLTELRELYLDNVDLSGRRTEWCK-AMSFLPNLQVLNLSNCLLSDPINHHLANLLSL 183
                 ++ ++       +  R E     +S +  L  L     L        L  L +L
Sbjct: 115 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL 174

Query: 184 SVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLL 243
           + +   D  +        +A L NL +L  +   +    P     +  L+ L L+ N L 
Sbjct: 175 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQL- 231

Query: 244 QGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIP-------- 295
              +      ++L +L+L N   S   P  +  L  L  + + +   +   P        
Sbjct: 232 -KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALT 288

Query: 296 ------------TSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341
                       + ++NL  L +L    N+ SD  P   L     L  L  ++N ++ 
Sbjct: 289 NLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFANNKVSD 343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.8 bits (120), Expect = 1e-07
 Identities = 44/195 (22%), Positives = 75/195 (38%), Gaps = 16/195 (8%)

Query: 149 WCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNL 208
               ++ L NL+ L  +N  +SD     +    +L  + L  N     +    +A+L NL
Sbjct: 189 DISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQ---LKDIGTLASLTNL 243

Query: 209 TTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSG 268
           T LDL+   +    P   L    L  L L  N +     P     +       +N     
Sbjct: 244 TDLDLANNQISNLAPLSGL--TKLTELKLGANQI-SNISPLAGLTALTNLELNENQLEDI 300

Query: 269 KLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRN 328
               ++ NL  L    +   N +   P  +++LT+L  L F++N  SD      L    N
Sbjct: 301 SPISNLKNLTYL---TLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSSLANL---TN 352

Query: 329 LNYLNLSSNDLTGGI 343
           +N+L+   N ++   
Sbjct: 353 INWLSAGHNQISDLT 367

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.0 bits (136), Expect = 8e-10
 Identities = 47/306 (15%), Positives = 90/306 (29%), Gaps = 36/306 (11%)

Query: 38  CDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFP--MPS 95
           C    V C + G      L   P  +                 L+L              
Sbjct: 10  CHLRVVQCSDLG------LEKVPKDLPP-----------DTALLDLQNNKITEIKDGDFK 52

Query: 96  SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSF 155
           +L  L TL L +         ++   +   F  L +L  LYL    L     +  K +  
Sbjct: 53  NLKNLHTLILIN--------NKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQE 104

Query: 156 LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQ 215
           L         N +     +        + V    +    S         +  L+ + ++ 
Sbjct: 105 LRVH-----ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 159

Query: 216 CDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIG 275
            ++    P+ +   P+L  L L  N + +         ++L  L L   S S     S+ 
Sbjct: 160 TNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 216

Query: 276 NLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLS 335
           N  +L  + +++      +P  +A+   +  +   +N+ S            N    + S
Sbjct: 217 NTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 275

Query: 336 SNDLTG 341
              L  
Sbjct: 276 GVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 6/166 (3%)

Query: 182 SLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNS 241
             +++ L++N  ++        NL NL TL L    +    P     +  LE L LS N 
Sbjct: 32  DTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 242 LLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANL 301
           L +           LR    + T     + + +  +  +  +  +    +     +   +
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGM 149

Query: 302 TQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNI 347
            +L ++  +  + +    T+   +  +L  L+L  N +T   ++++
Sbjct: 150 KKLSYIRIADTNIT----TIPQGLPPSLTELHLDGNKITKVDAASL 191

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 246 SLPHFPKN--SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQ 303
            L   PK+       L+L+N   +        NL+NL ++ + +   ++  P + A L +
Sbjct: 21  GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 304 LFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGI 343
           L  L  S N   + +P       + L         +   +
Sbjct: 81  LERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKSV 119

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 4e-08
 Identities = 49/219 (22%), Positives = 77/219 (35%), Gaps = 4/219 (1%)

Query: 130 TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLR 189
              + ++L    +S              NL +L L + +L+         L  L  + L 
Sbjct: 32  AASQRIFLHGNRISHVPAAS---FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 190 DNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPH 249
           DN  +    P     L  L TL L +C L    P     +  L+ L L  N+L       
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 250 FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDF 309
           F    +L +L L     S     +   L +L  + +         P +  +L +L  L  
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 310 SSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNIL 348
            +N+ S  +PT  L   R L YL L+ N       +  L
Sbjct: 209 FANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRARPL 246

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 8e-06
 Identities = 46/268 (17%), Positives = 76/268 (28%), Gaps = 31/268 (11%)

Query: 94  PSSLPRLVT-LDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA 152
           P  +P     + L           R+       F+    L  L+L +      R +    
Sbjct: 27  PVGIPAASQRIFLHG--------NRISHVPAASFRACRNLTILWLHSN--VLARIDAAAF 76

Query: 153 MSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLD 212
                  Q+    N  L          L  L  + L D   +    P     L  L  L 
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL-DRCGLQELGPGLFRGLAALQYLY 135

Query: 213 LSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPD 272
           L    L     +    +  L  L L  N +       F    SL  L L     +   P 
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 273 SIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMS------ 326
           +  +L  L ++ + + N +     ++A L  L +L  + N +        L+        
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRG 255

Query: 327 -------------RNLNYLNLSSNDLTG 341
                           +   L++NDL G
Sbjct: 256 SSSEVPCSLPQRLAGRDLKRLAANDLQG 283

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 4e-07
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 3/107 (2%)

Query: 209 TTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSG 268
            TLDL+  +LH     ++L    +        S +   L        +++++L N+    
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVI-AFRCP-RSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 269 K-LPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHF 314
             L   +     L ++ +     + PI  ++A  + L  L+ S    
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 107

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 23/187 (12%), Positives = 48/187 (25%), Gaps = 9/187 (4%)

Query: 158 NLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCD 217
            +         +  P+  H +    +  + L ++      +   ++    L  L L    
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 218 LHGKFPEKVLQVPTLETLDLSYNSLLQGS--------LPHFPKNSSLRNLNLKNTSFSGK 269
           L       + +   L  L+LS  S                  + +     +         
Sbjct: 83  LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142

Query: 270 LPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNL 329
           +      +  L             + T +     L HLD S +           +    L
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202

Query: 330 NYLNLSS 336
            +L+LS 
Sbjct: 203 QHLSLSR 209

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 5/108 (4%)

Query: 234 TLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRP 293
            L L++  L    L H  +   + +L+L +       P ++  L  L  +  S       
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 294 IPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341
              +     Q   L   +N          L     L  LNL  N L  
Sbjct: 59  DGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 36/183 (19%), Positives = 55/183 (30%), Gaps = 6/183 (3%)

Query: 157 PNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQC 216
            +  +L+LS  LL       L     L+ + L        QV   +  L           
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVL----GTLDLSH 86

Query: 217 DLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGN 276
           +     P     +P L  LD+S+N L    L        L+ L LK        P  +  
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 277 LENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSS 336
              L  + +++ N T      +  L  L  L    N           + S  L +  L  
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG--FFGSHLLPFAFLHG 204

Query: 337 NDL 339
           N  
Sbjct: 205 NPW 207

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 5e-05
 Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 9/94 (9%)

Query: 253 NSSLRNLNLKNTSFSGK-LPDSIGNLENLASVDVSSCNFT----RPIPTSMANLTQLFHL 307
           +  +++L+++    S     + +  L+    V +  C  T    + I +++     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 308 DFSSNHFSD----PIPTLRLYMSRNLNYLNLSSN 337
           +  SN   D     +       S  +  L+L + 
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 4/92 (4%)

Query: 181 LSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQV----PTLETLD 236
           L +  + ++       +  E +  L     + L  C L     + +       P L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 237 LSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSG 268
           L  N L    +    +     +  ++  S   
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 6e-04
 Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 206 LNLTTLDLSQCDL-HGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPK----NSSLRNLN 260
           L++ +LD+   +L   ++ E +  +   + + L    L +            N +L  LN
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 261 LKNTSFSGKLPDSIGNL 277
           L++          +   
Sbjct: 62  LRSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 100 LVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEW-CKAMSFLPN 158
           + +LD+   E +S   W   +P       L + + + LD+  L+  R +    A+   P 
Sbjct: 4   IQSLDIQCEE-LSDARWAELLPL------LQQCQVVRLDDCGLTEARCKDISSALRVNPA 56

Query: 159 LQVLNLSNCLLSDPINHHLANLLSLSVIRLR 189
           L  LNL +  L D   H +   L     +++
Sbjct: 57  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQ 87

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 19/136 (13%), Positives = 41/136 (30%), Gaps = 4/136 (2%)

Query: 197 QVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSL 256
           Q  ++  N +    LDL    +          +   + +D S N + +  L  FP    L
Sbjct: 10  QAAQYT-NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRL 65

Query: 257 RNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSD 316
           + L + N             L +L  + +++ +             +         +   
Sbjct: 66  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125

Query: 317 PIPTLRLYMSRNLNYL 332
                RLY+   +  +
Sbjct: 126 NKKHYRLYVIYKVPQV 141

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 195 SCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNS 254
           S ++        +L  L++S   L  + P      P LE L  S+N L    +P  P+N 
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHL--AEVPELPQN- 325

Query: 255 SLRNLNLKNTSFSGKLPDSIGNLENL 280
            L+ L+++      + PD   ++E+L
Sbjct: 326 -LKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 213 LSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPD 272
                   +        P+LE L++S N L+   LP  P    L  L       + ++P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI--ELPALPPR--LERLIASFNHLA-EVPE 321

Query: 273 SIGNLENLASVDVSSCNFTRPIPTSMANLTQL 304
              NL+ L    V         P    ++  L
Sbjct: 322 LPQNLKQL---HVEYNPLRE-FPDIPESVEDL 349

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 30/221 (13%), Positives = 70/221 (31%), Gaps = 25/221 (11%)

Query: 128 NLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIR 187
            L    ++     +++   T+     + L  +  L+     ++      +  L +L  + 
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQ-----ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLE 69

Query: 188 LRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSL 247
           L+DN        + +  +  L        ++      + ++   L +  ++  + L G  
Sbjct: 70  LKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 248 PHFPKNSSLRNL-------------NLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPI 294
                   L  +              L   +        + NL  L ++       +   
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189

Query: 295 PTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLS 335
           P  +A+L  L  +   +N  SD  P   L  + NL  + L+
Sbjct: 190 P--LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLT 225

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 30/202 (14%), Positives = 56/202 (27%), Gaps = 26/202 (12%)

Query: 74  SLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELR 133
           +       NL           + L  +  +  ++ +          I +    Q L  + 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSD----------IKSVQGIQYLPNVT 71

Query: 134 ELYLDNVDLSG------------RRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLL 181
           +L+L+   L+                +  K         +  L +  L       +  L+
Sbjct: 72  KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131

Query: 182 SLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNS 241
            L  +               ++ L  L TL L    +    P   L    L+ L LS N 
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL--TKLQNLYLSKNH 189

Query: 242 LLQGSLPHFPKNSSLRNLNLKN 263
           +    L       +L  L L +
Sbjct: 190 I--SDLRALAGLKNLDVLELFS 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	348
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.9
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.63
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.6
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.58
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.12
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.07
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.21
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.19
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.12
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.02
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.76
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.7

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=5.5e-37  Score=269.23  Aligned_cols=301  Identities=27%  Similarity=0.419  Sum_probs=223.7

Q ss_pred             CchHHHHHHHHHhhhCccCCCCCCcccCCCCCCCCCCcc--ccceEeCCC---CCEEEEeCCCCccccccccCCcccccc
Q 035693            1 CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCD--WNGVDCDEA---GHVIGLDLSAEPILIGSLENASGLFSL   75 (348)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~--~~~~~c~~~---~~l~~L~ls~~~~~~~~~~~~~~l~~~   75 (348)
                      |.++|+.||.+||+++. +|     ..+++|..++|||.  |.||+|+..   .+|++|+|+++ .+.+..+....++++
T Consensus         3 c~~~e~~aLl~~k~~~~-~~-----~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~-~l~g~~~lp~~l~~L   75 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLG-NP-----TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-NLPKPYPIPSSLANL   75 (313)
T ss_dssp             SCHHHHHHHHHHHHHTT-CC-----GGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC-CCSSCEECCGGGGGC
T ss_pred             CCHHHHHHHHHHHHHCC-CC-----CcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCC-CCCCCCCCChHHhcC
Confidence            99999999999999984 32     46899999999994  999999865   47999999999 777643333389999


Q ss_pred             cccCEEeCCC-CCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhC
Q 035693           76 QYLQSLNLGF-TLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS  154 (348)
Q Consensus        76 ~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  154 (348)
                      ++|++|++++ |.+++.                            +|..  +.++++|++|++++|++....+   ..+.
T Consensus        76 ~~L~~L~Ls~~N~l~g~----------------------------iP~~--i~~L~~L~~L~Ls~N~l~~~~~---~~~~  122 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGP----------------------------IPPA--IAKLTQLHYLYITHTNVSGAIP---DFLS  122 (313)
T ss_dssp             TTCSEEEEEEETTEESC----------------------------CCGG--GGGCTTCSEEEEEEECCEEECC---GGGG
T ss_pred             ccccccccccccccccc----------------------------cccc--cccccccchhhhcccccccccc---cccc
Confidence            9999999986 566543                            3433  6667777777777776665544   3456


Q ss_pred             CCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCC-CEEEccCCcCCCcccccccCCCCcc
Q 035693          155 FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNL-TTLDLSQCDLHGKFPEKVLQVPTLE  233 (348)
Q Consensus       155 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~l~~~~~L~  233 (348)
                      .+..|++++++.|.+...+|..+..+++++.+++++| ...+.++..+..+..+ +.+++++|.+.+..+..+..+.. .
T Consensus       123 ~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n-~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~  200 (313)
T d1ogqa_         123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-A  200 (313)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-S
T ss_pred             chhhhcccccccccccccCchhhccCcccceeecccc-cccccccccccccccccccccccccccccccccccccccc-c
Confidence            6677777777777777667777777777777777777 3444556666666654 67777888777666666655544 3


Q ss_pred             EEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCc
Q 035693          234 TLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNH  313 (348)
Q Consensus       234 ~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~  313 (348)
                      .+++..+.........+...++++.++++++.+.+.++ .++.+++|+.|++++|++++.+|..+.++++|++|+|++|+
T Consensus       201 ~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             cccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCc
Confidence            57777776544444555567788888888888875443 56777889999999999987788888888999999999999


Q ss_pred             cCCccCchhhhhhcCCCeeecccCc-cccc-CCCC
Q 035693          314 FSDPIPTLRLYMSRNLNYLNLSSND-LTGG-ISSN  346 (348)
Q Consensus       314 l~~~~~~~~~~~~~~L~~L~l~~n~-l~g~-ip~~  346 (348)
                      ++|.+|..  ..+++|+.+++++|+ +.|. +|.+
T Consensus       280 l~g~iP~~--~~L~~L~~l~l~~N~~l~g~plp~c  312 (313)
T d1ogqa_         280 LCGEIPQG--GNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             EEEECCCS--TTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             ccccCCCc--ccCCCCCHHHhCCCccccCCCCCCC
Confidence            98888864  334788999999986 6764 6754

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=2.8e-25  Score=194.09  Aligned_cols=234  Identities=24%  Similarity=0.329  Sum_probs=195.1

Q ss_pred             CCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccC-cCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHh
Q 035693           99 RLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDN-VDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHL  177 (348)
Q Consensus        99 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  177 (348)
                      ++++|+++++.+..    ...+|..  +.++++|++|++++ |++.+..|   ..+.++++|++|++++|.+.+..+..+
T Consensus        51 ~v~~L~L~~~~l~g----~~~lp~~--l~~L~~L~~L~Ls~~N~l~g~iP---~~i~~L~~L~~L~Ls~N~l~~~~~~~~  121 (313)
T d1ogqa_          51 RVNNLDLSGLNLPK----PYPIPSS--LANLPYLNFLYIGGINNLVGPIP---PAIAKLTQLHYLYITHTNVSGAIPDFL  121 (313)
T ss_dssp             CEEEEEEECCCCSS----CEECCGG--GGGCTTCSEEEEEEETTEESCCC---GGGGGCTTCSEEEEEEECCEEECCGGG
T ss_pred             EEEEEECCCCCCCC----CCCCChH--HhcCccccccccccccccccccc---cccccccccchhhhccccccccccccc
Confidence            45566666665432    2246665  89999999999986 67775544   578999999999999999999888889


Q ss_pred             hhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCc-cEEEccCCCCCCCCCCCCCCCCCC
Q 035693          178 ANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTL-ETLDLSYNSLLQGSLPHFPKNSSL  256 (348)
Q Consensus       178 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L-~~L~l~~~~l~~~~~~~~~~~~~L  256 (348)
                      ..+.+|+.++++.| .....++..+.+++.++++++++|.+.+.+|..+..+..+ +.+++++|++.......+... ..
T Consensus       122 ~~~~~L~~l~l~~N-~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~  199 (313)
T d1ogqa_         122 SQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NL  199 (313)
T ss_dssp             GGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CC
T ss_pred             cchhhhcccccccc-cccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc-cc
Confidence            99999999999998 4455678889999999999999999988889888888775 889999998765555555544 45


Q ss_pred             cEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeeccc
Q 035693          257 RNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSS  336 (348)
Q Consensus       257 ~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~  336 (348)
                      ..+++..+...+.++..+..+++++.+++++|.+.+.++ .+..+++|+.|++++|++++.+|..+... ++|++|+|++
T Consensus       200 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L-~~L~~L~Ls~  277 (313)
T d1ogqa_         200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQL-KFLHSLNVSF  277 (313)
T ss_dssp             SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGC-TTCCEEECCS
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCC-CCCCEEECcC
Confidence            579999998888888888889999999999999988554 57788999999999999998899886654 8999999999


Q ss_pred             CcccccCCC
Q 035693          337 NDLTGGISS  345 (348)
Q Consensus       337 n~l~g~ip~  345 (348)
                      |+|+|+||+
T Consensus       278 N~l~g~iP~  286 (313)
T d1ogqa_         278 NNLCGEIPQ  286 (313)
T ss_dssp             SEEEEECCC
T ss_pred             CcccccCCC
Confidence            999999997

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=6.9e-23  Score=178.03  Aligned_cols=273  Identities=19%  Similarity=0.210  Sum_probs=203.4

Q ss_pred             ccccceEeCCCCCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCC--CCCCCCCcEEecCCCCCCCCcc
Q 035693           38 CDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPM--PSSLPRLVTLDLSSREPISGFS  115 (348)
Q Consensus        38 ~~~~~~~c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~  115 (348)
                      |.|..+.|+..            .+. .+|.  .+  .+++++|++++|.++...-  ...+++|++|++++|.+..   
T Consensus        10 c~~~~~~C~~~------------~L~-~lP~--~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~---   69 (305)
T d1xkua_          10 CHLRVVQCSDL------------GLE-KVPK--DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK---   69 (305)
T ss_dssp             EETTEEECTTS------------CCC-SCCC--SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC---
T ss_pred             ecCCEEEecCC------------CCC-ccCC--CC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccc---
Confidence            67788888642            222 4453  33  2578899999998887521  2278899999999987642   


Q ss_pred             eeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCC
Q 035693          116 WRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVS  195 (348)
Q Consensus       116 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  195 (348)
                         ..+..  +.++++|+.|++++|++...+.      .....++.|.+..|.+....+..+.....+..+....+....
T Consensus        70 ---i~~~~--f~~l~~L~~L~l~~n~l~~l~~------~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~  138 (305)
T d1xkua_          70 ---ISPGA--FAPLVKLERLYLSKNQLKELPE------KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS  138 (305)
T ss_dssp             ---BCTTT--TTTCTTCCEEECCSSCCSBCCS------SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred             ---cchhh--hhCCCccCEecccCCccCcCcc------chhhhhhhhhccccchhhhhhhhhhccccccccccccccccc
Confidence               22333  7889999999999998876543      234678899999998888767777777888888887764322


Q ss_pred             -CChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccc
Q 035693          196 -CQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSI  274 (348)
Q Consensus       196 -~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l  274 (348)
                       ......+..+++|+++++++|.+. .++..  .+++|+.|++++|.........+..++.+++|++++|.+.+..+..+
T Consensus       139 ~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~  215 (305)
T d1xkua_         139 SGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL  215 (305)
T ss_dssp             GGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred             cCCCccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccc
Confidence             233456778889999999998876 44443  35789999999988766666777788899999999999886667788


Q ss_pred             cCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchh------hhhhcCCCeeecccCccc-ccCCCC
Q 035693          275 GNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLR------LYMSRNLNYLNLSSNDLT-GGISSN  346 (348)
Q Consensus       275 ~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~------~~~~~~L~~L~l~~n~l~-g~ip~~  346 (348)
                      ..+++|++|+|++|+++. +|..+..+++|++|++++|+|+. ++...      ....++|+.|+|++|+++ .+++..
T Consensus       216 ~~l~~L~~L~L~~N~L~~-lp~~l~~l~~L~~L~Ls~N~i~~-i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~  292 (305)
T d1xkua_         216 ANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS  292 (305)
T ss_dssp             GGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGG
T ss_pred             cccccceeeecccccccc-cccccccccCCCEEECCCCccCc-cChhhccCcchhcccCCCCEEECCCCcCccCcCCHh
Confidence            888999999999999987 67788889999999999999875 43322      223377999999999885 566543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.90  E-value=5.6e-22  Score=177.51  Aligned_cols=170  Identities=25%  Similarity=0.296  Sum_probs=77.4

Q ss_pred             CCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCcc
Q 035693          154 SFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLE  233 (348)
Q Consensus       154 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~  233 (348)
                      ..+++++.+++++|.+++..+  ...+++|++|++++|....   ...+..+++|+.+++++|.+.+..  .+..+++|+
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~  266 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLA--PLSGLTKLT  266 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCS
T ss_pred             ccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC---cchhhcccccchhccccCccCCCC--cccccccCC
Confidence            344555555555555554322  2344555555555552211   123445555555555555554221  244455555


Q ss_pred             EEEccCCCCCC--------------------CCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCC
Q 035693          234 TLDLSYNSLLQ--------------------GSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRP  293 (348)
Q Consensus       234 ~L~l~~~~l~~--------------------~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~  293 (348)
                      +|+++++.+..                    ..+..+..+++++.|++++|++++. + .+..+++|++|++++|++++ 
T Consensus       267 ~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-  343 (384)
T d2omza2         267 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-  343 (384)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-
T ss_pred             EeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-
Confidence            55555554321                    1122233344455555555555422 1 23444555555555555544 


Q ss_pred             CcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccC
Q 035693          294 IPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSN  337 (348)
Q Consensus       294 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n  337 (348)
                      ++ .+..+++|++|++++|++++-.|   +..+++|++|+|++|
T Consensus       344 l~-~l~~l~~L~~L~l~~N~l~~l~~---l~~l~~L~~L~L~~N  383 (384)
T d2omza2         344 VS-SLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CG-GGGGCTTCCEEECCSSCCCBCGG---GTTCTTCSEEECCCE
T ss_pred             Ch-hHcCCCCCCEEECCCCcCCCChh---hccCCCCCEeeCCCC
Confidence            22 24445555555555555544211   122345555555544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.90  E-value=1.2e-21  Score=175.24  Aligned_cols=264  Identities=25%  Similarity=0.289  Sum_probs=193.0

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN  128 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  128 (348)
                      .++++|+++++ .+. .+.   .+..+++|++|++++|.+++......+++|++|++++|.+..       ++   .+.+
T Consensus        44 ~~l~~L~l~~~-~I~-~l~---gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~-------i~---~l~~  108 (384)
T d2omza2          44 DQVTTLQADRL-GIK-SID---GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD-------IT---PLAN  108 (384)
T ss_dssp             TTCCEEECCSS-CCC-CCT---TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-------CG---GGTT
T ss_pred             CCCCEEECCCC-CCC-Ccc---ccccCCCCCEEeCcCCcCCCCccccCCccccccccccccccc-------cc---cccc
Confidence            67999999999 665 233   678999999999999999986333489999999999998642       22   2688


Q ss_pred             CCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccC---------------------------------------
Q 035693          129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLL---------------------------------------  169 (348)
Q Consensus       129 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---------------------------------------  169 (348)
                      +++|+.++++++.+.+...     ......+.......+.+                                       
T Consensus       109 l~~L~~L~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (384)
T d2omza2         109 LTNLTGLTLFNNQITDIDP-----LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS  183 (384)
T ss_dssp             CTTCCEEECCSSCCCCCGG-----GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECC
T ss_pred             ccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccc
Confidence            9999999999988876443     12222233322222111                                       


Q ss_pred             --CCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCC
Q 035693          170 --SDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSL  247 (348)
Q Consensus       170 --~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~  247 (348)
                        ..........+++++.+.++++. .+...  .+...++|++|++++|.+.. + ..+..+++|+.+++++|.+.  ..
T Consensus       184 ~~~~~~~~~~~~l~~~~~l~l~~n~-i~~~~--~~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~--~~  256 (384)
T d2omza2         184 SNKVSDISVLAKLTNLESLIATNNQ-ISDIT--PLGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQIS--NL  256 (384)
T ss_dssp             SSCCCCCGGGGGCTTCSEEECCSSC-CCCCG--GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC--CC
T ss_pred             ccccccccccccccccceeeccCCc-cCCCC--cccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccC--CC
Confidence              00123456677899999999984 34332  24667899999999999873 3 35778899999999999864  34


Q ss_pred             CCCCCCCCCcEEEcccCCCCCCC--------------------CccccCCCCCCEEeecCCccCCCCcccccCCCCCCEE
Q 035693          248 PHFPKNSSLRNLNLKNTSFSGKL--------------------PDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHL  307 (348)
Q Consensus       248 ~~~~~~~~L~~L~ls~n~~~~~~--------------------~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L  307 (348)
                      +.+..+++|++|+++++.+.+..                    ...+..+++++.|++++|++.+. + .+..+++|++|
T Consensus       257 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L  334 (384)
T d2omza2         257 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRL  334 (384)
T ss_dssp             GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEE
T ss_pred             CcccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEE
Confidence            45677888999999888766321                    12245567889999999999874 3 26789999999


Q ss_pred             eCCCCccCCccCchhhhhhcCCCeeecccCcccccCC
Q 035693          308 DFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGIS  344 (348)
Q Consensus       308 ~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip  344 (348)
                      ++++|++++ ++.  +..+++|++|++++|++++-.|
T Consensus       335 ~L~~n~l~~-l~~--l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         335 FFANNKVSD-VSS--LANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             ECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCBCGG
T ss_pred             ECCCCCCCC-Chh--HcCCCCCCEEECCCCcCCCChh
Confidence            999999986 553  3456899999999999986543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.1e-22  Score=172.04  Aligned_cols=188  Identities=21%  Similarity=0.186  Sum_probs=103.0

Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEcc-CccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhc
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLS-NCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVAN  204 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~  204 (348)
                      +.++++|++|+++++.+.....   ..+.....++.+.+. .+.+....+..+..+++|++|++++|. ........+..
T Consensus        52 f~~l~~L~~L~ls~n~l~~i~~---~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~  127 (284)
T d1ozna_          52 FRACRNLTILWLHSNVLARIDA---AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRG  127 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred             hhcccccccccccccccccccc---ccccccccccccccccccccccccchhhcccccCCEEecCCcc-cccccccccch
Confidence            4445555555555555544333   233444455555443 233334334455555556666665552 22223334445


Q ss_pred             CCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEe
Q 035693          205 LLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVD  284 (348)
Q Consensus       205 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~  284 (348)
                      ..+|+.+++++|.++...+..+..+++|+.|++++|++.......|..+++|+++++++|++++..|..+..+++|++|+
T Consensus       128 ~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~  207 (284)
T d1ozna_         128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (284)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             hcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccc
Confidence            55566666666666533344455556666666666665544445555566666666666666655555666666666666


Q ss_pred             ecCCccCCCCcccccCCCCCCEEeCCCCccCCc
Q 035693          285 VSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDP  317 (348)
Q Consensus       285 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~  317 (348)
                      +++|.+.+..+..+..+++|+.|++++|++.++
T Consensus       208 l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             CCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             ccccccccccccccccccccCEEEecCCCCCCC
Confidence            666666665555566666666666666666543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.8e-22  Score=170.30  Aligned_cols=209  Identities=23%  Similarity=0.264  Sum_probs=179.4

Q ss_pred             CCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCC
Q 035693          130 TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLT  209 (348)
Q Consensus       130 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  209 (348)
                      +.+++|+|++|+++..++   ..+.++++|++|++++|.+....+..+..+..++.+....+.......+..+.++++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~---~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~  108 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPA---ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH  108 (284)
T ss_dssp             TTCSEEECTTSCCCEECT---TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred             CCCCEEECcCCcCCCCCH---HHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCC
Confidence            467888999988887665   56888999999999999999877788888899999988766455555577889999999


Q ss_pred             EEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCc
Q 035693          210 TLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCN  289 (348)
Q Consensus       210 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~  289 (348)
                      +|++++|.+....+..+...++|+.+++++|.+.......|...+.|+.|++++|++....+.++..+++|+.+++++|.
T Consensus       109 ~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~  188 (284)
T d1ozna_         109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (284)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcc
Confidence            99999999876666677788999999999999877666778888999999999999986667788899999999999999


Q ss_pred             cCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccccc
Q 035693          290 FTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGG  342 (348)
Q Consensus       290 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~  342 (348)
                      +.+..|..+..+++|+.|++++|++.+ ++...+..+++|++|++++|++.+.
T Consensus       189 l~~i~~~~f~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         189 VAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             ccccChhHhhhhhhccccccccccccc-ccccccccccccCEEEecCCCCCCC
Confidence            999889999999999999999999987 4544555568999999999988754

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=1.4e-20  Score=163.19  Aligned_cols=253  Identities=21%  Similarity=0.238  Sum_probs=200.2

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF  125 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  125 (348)
                      .++++|+|++| .+. .+|. ..+.++++|+.|++++|.+... .+.   .+++|++|++++|.++       .++.   
T Consensus        31 ~~l~~L~Ls~N-~i~-~l~~-~~f~~l~~L~~L~l~~n~~~~i-~~~~f~~l~~L~~L~l~~n~l~-------~l~~---   96 (305)
T d1xkua_          31 PDTALLDLQNN-KIT-EIKD-GDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQLK-------ELPE---   96 (305)
T ss_dssp             TTCCEEECCSS-CCC-CBCT-TTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCS-------BCCS---
T ss_pred             CCCCEEECcCC-cCC-CcCh-hHhhcccccccccccccccccc-chhhhhCCCccCEecccCCccC-------cCcc---
Confidence            67999999999 776 4443 2688999999999999998875 232   7999999999999874       2332   


Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCC--cchHHhhhccCCCEEEcccCCCCCCChhhhhh
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSD--PINHHLANLLSLSVIRLRDNHAVSCQVPEFVA  203 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~  203 (348)
                       ...+.++.|.+.++.+.....   ..+.....++.++...+....  ..+..+..+++|+.+++.+|....  ++..  
T Consensus        97 -~~~~~l~~L~~~~n~l~~l~~---~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~--l~~~--  168 (305)
T d1xkua_          97 -KMPKTLQELRVHENEITKVRK---SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQG--  168 (305)
T ss_dssp             -SCCTTCCEEECCSSCCCBBCH---HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--CCSS--
T ss_pred             -chhhhhhhhhccccchhhhhh---hhhhccccccccccccccccccCCCccccccccccCccccccCCccc--cCcc--
Confidence             234688999999999887665   456677888889988876543  245577888999999999985432  2222  


Q ss_pred             cCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEE
Q 035693          204 NLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASV  283 (348)
Q Consensus       204 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L  283 (348)
                      .++++++|++++|......+..+..++.++.|++++|.+.......+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus       169 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L  247 (305)
T d1xkua_         169 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV  247 (305)
T ss_dssp             CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEE
T ss_pred             cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEE
Confidence            3578999999999988777888999999999999999987777777788999999999999998 678889999999999


Q ss_pred             eecCCccCCCCcc------cccCCCCCCEEeCCCCccCC-ccCchhhh
Q 035693          284 DVSSCNFTRPIPT------SMANLTQLFHLDFSSNHFSD-PIPTLRLY  324 (348)
Q Consensus       284 ~L~~n~l~~~~~~------~l~~~~~L~~L~l~~n~l~~-~~~~~~~~  324 (348)
                      ++++|+++.....      .....++|+.|++++|++.. .++...++
T Consensus       248 ~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~  295 (305)
T d1xkua_         248 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR  295 (305)
T ss_dssp             ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred             ECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhc
Confidence            9999999874332      23456789999999999863 34444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.9e-20  Score=159.14  Aligned_cols=202  Identities=20%  Similarity=0.170  Sum_probs=162.0

Q ss_pred             CCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHH
Q 035693           97 LPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHH  176 (348)
Q Consensus        97 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  176 (348)
                      ...+.+++.+++.++       .+|..  +.  +++++|+|++|.++...+   ..+.++++|++|++++|.++. ++ .
T Consensus         9 ~~~~~~v~C~~~~L~-------~iP~~--lp--~~l~~L~Ls~N~i~~l~~---~~f~~l~~L~~L~L~~N~l~~-l~-~   72 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-------ALPPD--LP--KDTTILHLSENLLYTFSL---ATLMPYTRLTQLNLDRAELTK-LQ-V   72 (266)
T ss_dssp             STTCCEEECTTSCCS-------SCCSC--CC--TTCCEEECTTSCCSEEEG---GGGTTCTTCCEEECTTSCCCE-EE-C
T ss_pred             cCCCeEEEccCCCCC-------eeCcC--cC--cCCCEEECcCCcCCCcCH---HHhhccccccccccccccccc-cc-c
Confidence            456677888888764       34433  21  479999999999987765   567889999999999999886 33 3


Q ss_pred             hhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCC
Q 035693          177 LANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSL  256 (348)
Q Consensus       177 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L  256 (348)
                      +..+++|++|++++|+...  .+..+..++.|++|+++++.+....+..+..+.+++.|++++|.+.......+..++.+
T Consensus        73 ~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l  150 (266)
T d1p9ag_          73 DGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL  150 (266)
T ss_dssp             CSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             ccccccccccccccccccc--cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccc
Confidence            4678899999999985432  45567788999999999998876666667788899999999998776666667778899


Q ss_pred             cEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCc
Q 035693          257 RNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDP  317 (348)
Q Consensus       257 ~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~  317 (348)
                      +.+++++|++++..+..+..+++|++|+|++|+++. +|..+..+++|+.|+|++|++.++
T Consensus       151 ~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~-lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             hhcccccccccccCccccccccccceeecccCCCcc-cChhHCCCCCCCEEEecCCCCCCC
Confidence            999999999987666778888999999999999985 787777889999999999998763

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.7e-20  Score=158.15  Aligned_cols=201  Identities=21%  Similarity=0.187  Sum_probs=145.4

Q ss_pred             cccccCEEeCCCCCCCCCCCCCCC-CCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhh
Q 035693           74 SLQYLQSLNLGFTLFYGFPMPSSL-PRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA  152 (348)
Q Consensus        74 ~~~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  152 (348)
                      +...+.+++.+++.++.  +|..+ ++|++|+|++|.++       .++. ..+.++++|++|++++|+++...     .
T Consensus         8 ~~~~~~~v~C~~~~L~~--iP~~lp~~l~~L~Ls~N~i~-------~l~~-~~f~~l~~L~~L~L~~N~l~~l~-----~   72 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA--LPPDLPKDTTILHLSENLLY-------TFSL-ATLMPYTRLTQLNLDRAELTKLQ-----V   72 (266)
T ss_dssp             CSTTCCEEECTTSCCSS--CCSCCCTTCCEEECTTSCCS-------EEEG-GGGTTCTTCCEEECTTSCCCEEE-----C
T ss_pred             ccCCCeEEEccCCCCCe--eCcCcCcCCCEEECcCCcCC-------CcCH-HHhhccccccccccccccccccc-----c
Confidence            34445555666666654  45544 35777777777653       1111 22677888888888888876543     2


Q ss_pred             hCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCc
Q 035693          153 MSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTL  232 (348)
Q Consensus       153 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L  232 (348)
                      +..+++|++|++++|.+.. .+..+..+++|+.|+++++. ........+..+.++++|++.+|.+....+..+..++.+
T Consensus        73 ~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l  150 (266)
T d1p9ag_          73 DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL  150 (266)
T ss_dssp             CSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             ccccccccccccccccccc-cccccccccccccccccccc-cceeeccccccccccccccccccccceeccccccccccc
Confidence            4667888888888888776 45567778888888888874 333445566777888899998888875555566778889


Q ss_pred             cEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCC
Q 035693          233 ETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR  292 (348)
Q Consensus       233 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~  292 (348)
                      +.+++++|++.......|..+++|++|++++|+++ .+|..+..+++|+.|+|++|++.-
T Consensus       151 ~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             hhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            99999999887666677778889999999999988 777777778889999999988763

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=5.7e-16  Score=136.06  Aligned_cols=252  Identities=22%  Similarity=0.200  Sum_probs=153.9

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN  128 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  128 (348)
                      .++++|+|+++ .++ .+|.     .+++|++|++++|+++.  +|....+|++|++++|.++.       +      ..
T Consensus        38 ~~l~~LdLs~~-~L~-~lp~-----~~~~L~~L~Ls~N~l~~--lp~~~~~L~~L~l~~n~l~~-------l------~~   95 (353)
T d1jl5a_          38 RQAHELELNNL-GLS-SLPE-----LPPHLESLVASCNSLTE--LPELPQSLKSLLVDNNNLKA-------L------SD   95 (353)
T ss_dssp             HTCSEEECTTS-CCS-CCCS-----CCTTCSEEECCSSCCSS--CCCCCTTCCEEECCSSCCSC-------C------CS
T ss_pred             cCCCEEEeCCC-CCC-CCCC-----CCCCCCEEECCCCCCcc--cccchhhhhhhhhhhcccch-------h------hh
Confidence            46889999999 775 5664     25789999999999986  78888899999999998642       2      22


Q ss_pred             C-CCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCC
Q 035693          129 L-TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLN  207 (348)
Q Consensus       129 l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~  207 (348)
                      + +.|++|++++|.+...+.     +..+++|++|+++++.+.....    ....+..+.+..+....   ...+..++.
T Consensus        96 lp~~L~~L~L~~n~l~~lp~-----~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~---~~~l~~l~~  163 (353)
T d1jl5a_          96 LPPLLEYLGVSNNQLEKLPE-----LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEE---LPELQNLPF  163 (353)
T ss_dssp             CCTTCCEEECCSSCCSSCCC-----CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSS---CCCCTTCTT
T ss_pred             hccccccccccccccccccc-----hhhhccceeecccccccccccc----ccccccchhhccccccc---ccccccccc
Confidence            2 369999999999876542     5678899999999887664211    12233444443331111   112223333


Q ss_pred             CCEEEccCCcCCC------------------cccccccCCCCccEEEccCCCCCCCCCCCC-----------------CC
Q 035693          208 LTTLDLSQCDLHG------------------KFPEKVLQVPTLETLDLSYNSLLQGSLPHF-----------------PK  252 (348)
Q Consensus       208 L~~L~l~~~~~~~------------------~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~-----------------~~  252 (348)
                      ++.+++.++....                  .....+..++.|+.+++.+|...... ...                 ..
T Consensus       164 l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~-~~~~~l~~~~~~~~~~~~~~~~  242 (353)
T d1jl5a_         164 LTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP-DLPPSLEALNVRDNYLTDLPEL  242 (353)
T ss_dssp             CCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC-SCCTTCCEEECCSSCCSCCCCC
T ss_pred             ceecccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc
Confidence            4444443332210                  00111233455566665555322110 000                 00


Q ss_pred             CCCCcEEEcccCCCCC----------------CCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCC
Q 035693          253 NSSLRNLNLKNTSFSG----------------KLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSD  316 (348)
Q Consensus       253 ~~~L~~L~ls~n~~~~----------------~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~  316 (348)
                      ...+...++..+.+.+                .+......+++|++|++++|++.. +|.   .+++|+.|++++|+++.
T Consensus       243 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~L~~  318 (353)
T d1jl5a_         243 PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLAE  318 (353)
T ss_dssp             CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             cccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccCc-ccc---ccCCCCEEECCCCcCCc
Confidence            1233333333332211                111112335789999999999986 564   35789999999999975


Q ss_pred             ccCchhhhhhcCCCeeecccCcccccCCC
Q 035693          317 PIPTLRLYMSRNLNYLNLSSNDLTGGISS  345 (348)
Q Consensus       317 ~~~~~~~~~~~~L~~L~l~~n~l~g~ip~  345 (348)
                       +|..    +++|++|++++|+++ .+|+
T Consensus       319 -l~~~----~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         319 -VPEL----PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             -CCCC----CTTCCEEECCSSCCS-SCCC
T ss_pred             -cccc----cCCCCEEECcCCcCC-CCCc
Confidence             7652    368999999999997 6664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1e-17  Score=138.61  Aligned_cols=205  Identities=20%  Similarity=0.249  Sum_probs=91.2

Q ss_pred             ccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCC
Q 035693           77 YLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFL  156 (348)
Q Consensus        77 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  156 (348)
                      ++..++++.+.+++......+.+|++|++.+|.+.       .+   +.+..+++|++|++++|.+.+..     .+..+
T Consensus        20 ~~~~~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~-------~l---~~l~~l~~L~~L~ls~n~i~~~~-----~l~~l   84 (227)
T d1h6ua2          20 NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-------TI---EGVQYLNNLIGLELKDNQITDLA-----PLKNL   84 (227)
T ss_dssp             HHHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCC-------CC---TTGGGCTTCCEEECCSSCCCCCG-----GGTTC
T ss_pred             HHHHHHhCCCCcCCcCCHHHcCCcCEEECCCCCCC-------cc---hhHhcCCCCcEeecCCceeeccc-----ccccc
Confidence            33344555555555411124555555555555432       11   11455666666666666555432     24555


Q ss_pred             CCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEE
Q 035693          157 PNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLD  236 (348)
Q Consensus       157 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  236 (348)
                      ++|+++++++|.++. + ..+..+++|+.+.++++.. ..  ...+...+.++.+.++.+.+...  ..+...++|+.|+
T Consensus        85 ~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~  157 (227)
T d1h6ua2          85 TKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQI-TD--VTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLS  157 (227)
T ss_dssp             CSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCC-CC--CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEE
T ss_pred             ccccccccccccccc-c-ccccccccccccccccccc-cc--cchhccccchhhhhchhhhhchh--hhhcccccccccc
Confidence            666666666655543 1 1344555555555555422 11  12233444555555555444321  1233444455555


Q ss_pred             ccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeC
Q 035693          237 LSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDF  309 (348)
Q Consensus       237 l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l  309 (348)
                      +++|.+.  ....+..+++|++|++++|++++ ++ .++.+++|++|++++|++++ ++. +.++++|+.|++
T Consensus       158 l~~n~~~--~~~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~l  224 (227)
T d1h6ua2         158 IGNAQVS--DLTPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTL  224 (227)
T ss_dssp             CCSSCCC--CCGGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEE
T ss_pred             ccccccc--cchhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEe
Confidence            5544331  11223334444444444444432 22 13344444444444444443 221 334444444444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=8.5e-17  Score=132.95  Aligned_cols=190  Identities=22%  Similarity=0.338  Sum_probs=151.6

Q ss_pred             hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC
Q 035693          126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL  205 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l  205 (348)
                      +..+.+|+.|++.+|++.+..     .+..+++|++|++++|.+.+..  .+..+++++.+++++|....   ...+.++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~-----~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~---i~~l~~l  106 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTIE-----GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN---VSAIAGL  106 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT-----TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC---CGGGTTC
T ss_pred             HHHcCCcCEEECCCCCCCcch-----hHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc---ccccccc
Confidence            567889999999999987653     4778999999999999998743  38889999999999984432   2357789


Q ss_pred             CCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEee
Q 035693          206 LNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDV  285 (348)
Q Consensus       206 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L  285 (348)
                      +.|+.+.++++...+.  ..+...+.++.+.+..+.+.  ....+...++|++|++++|.+...  ..++.+++|+.|++
T Consensus       107 ~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~L  180 (227)
T d1h6ua2         107 QSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQIT--NISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKA  180 (227)
T ss_dssp             TTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred             cccccccccccccccc--chhccccchhhhhchhhhhc--hhhhhccccccccccccccccccc--hhhcccccceeccc
Confidence            9999999999887632  34567788999999888653  334456678999999999988733  34778899999999


Q ss_pred             cCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeeccc
Q 035693          286 SSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSS  336 (348)
Q Consensus       286 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~  336 (348)
                      ++|.+.+ ++. ++.+++|++|++++|++++ ++.  +..+++|++|++++
T Consensus       181 s~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~-i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         181 DDNKISD-ISP-LASLPNLIEVHLKNNQISD-VSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-CGG--GTTCTTCCEEEEEE
T ss_pred             CCCccCC-Chh-hcCCCCCCEEECcCCcCCC-Ccc--cccCCCCCEEEeeC
Confidence            9999987 443 7889999999999999986 543  34558999999874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1e-17  Score=143.31  Aligned_cols=223  Identities=23%  Similarity=0.235  Sum_probs=111.1

Q ss_pred             EEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC-CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCC
Q 035693           52 IGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS-SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLT  130 (348)
Q Consensus        52 ~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~  130 (348)
                      +.+|+++. .+......  .+.. ..+..+.++...+....... ...+|++|++++|.+..     ..+.  ..+..|+
T Consensus         3 ~~lDLs~~-~l~~~~l~--~l~~-~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~-----~~l~--~l~~~c~   71 (284)
T d2astb2           3 QTLDLTGK-NLHPDVTG--RLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV-----STLH--GILSQCS   71 (284)
T ss_dssp             SEEECTTC-BCCHHHHH--HHHH-TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECH-----HHHH--HHHTTBC
T ss_pred             CEEECCCC-CCCchHHH--HHHh-ccceEeeccccccccchhhhccCCCCCEEECCCCccCH-----HHHH--HHHHhCC
Confidence            46788877 55322211  1111 23445555544333220111 45577778877775321     0111  2256777


Q ss_pred             CCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCc-cCCCc-chHHhhhccCCCEEEcccCCCCCC-Chhhhhhc-CC
Q 035693          131 ELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNC-LLSDP-INHHLANLLSLSVIRLRDNHAVSC-QVPEFVAN-LL  206 (348)
Q Consensus       131 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~-l~  206 (348)
                      +|++|++++|.+++...   ..+..+++|++|++++| .+++. +...+..+++|++|++++|...+. .....+.. .+
T Consensus        72 ~L~~L~L~~~~l~~~~~---~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~  148 (284)
T d2astb2          72 KLQNLSLEGLRLSDPIV---NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE  148 (284)
T ss_dssp             CCSEEECTTCBCCHHHH---HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred             CcccccccccCCCcHHH---HHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccc
Confidence            77777777776654332   45666777777777775 34432 223345667777777777643332 12223333 35


Q ss_pred             CCCEEEccCCc--CCCc-ccccccCCCCccEEEccCCC-CCCCCCCCCCCCCCCcEEEcccC-CCCCCCCccccCCCCCC
Q 035693          207 NLTTLDLSQCD--LHGK-FPEKVLQVPTLETLDLSYNS-LLQGSLPHFPKNSSLRNLNLKNT-SFSGKLPDSIGNLENLA  281 (348)
Q Consensus       207 ~L~~L~l~~~~--~~~~-~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~ls~n-~~~~~~~~~l~~~~~L~  281 (348)
                      .|+.|+++++.  ++.. +...+..+++|++|++++|. +++..+..+..+++|++|++++| .+++.....++.+++|+
T Consensus       149 ~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~  228 (284)
T d2astb2         149 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK  228 (284)
T ss_dssp             TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCC
Confidence            67777776642  2211 22223345666666666543 33333344444555555555553 23322223334444455


Q ss_pred             EEeecCC
Q 035693          282 SVDVSSC  288 (348)
Q Consensus       282 ~L~L~~n  288 (348)
                      .|++.+|
T Consensus       229 ~L~l~~~  235 (284)
T d2astb2         229 TLQVFGI  235 (284)
T ss_dssp             EEECTTS
T ss_pred             EEeeeCC
Confidence            5554444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.3e-16  Score=130.12  Aligned_cols=179  Identities=21%  Similarity=0.263  Sum_probs=97.6

Q ss_pred             EeCCCCCCCCCCCCC-CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCC
Q 035693           81 LNLGFTLFYGFPMPS-SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNL  159 (348)
Q Consensus        81 L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L  159 (348)
                      .++..+.+++. +.. .+.+|++|++++|.+..       +.   .+..+++|++|++++|++++..     .+..+++|
T Consensus        29 ~~l~~~~~~~~-~~~~~L~~L~~L~l~~~~i~~-------l~---~l~~l~~L~~L~L~~n~i~~l~-----~~~~l~~L   92 (210)
T d1h6ta2          29 DNLKKKSVTDA-VTQNELNSIDQIIANNSDIKS-------VQ---GIQYLPNVTKLFLNGNKLTDIK-----PLANLKNL   92 (210)
T ss_dssp             HHTTCSCTTSE-ECHHHHHTCCEEECTTSCCCC-------CT---TGGGCTTCCEEECCSSCCCCCG-----GGTTCTTC
T ss_pred             HHhCcCccCCc-cCHHHhcCccEEECcCCCCCC-------ch---hHhhCCCCCEEeCCCccccCcc-----ccccCccc
Confidence            34555555543 222 45666777777665431       11   1566777777777777766543     24566777


Q ss_pred             cEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccC
Q 035693          160 QVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSY  239 (348)
Q Consensus       160 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  239 (348)
                      ++|++++|.+++ ++ .+..+++|+.|+++++....   ...+..++.++.+++++|.+.+  +..+..+++|+.+++++
T Consensus        93 ~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~---~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~  165 (210)
T d1h6ta2          93 GWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD---INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLED  165 (210)
T ss_dssp             CEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC---CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCS
T ss_pred             cccccccccccc-cc-cccccccccccccccccccc---cccccccccccccccccccccc--ccccccccccccccccc
Confidence            777777777665 33 45666677777776663221   2345566666666666666542  12334455566666655


Q ss_pred             CCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeec
Q 035693          240 NSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVS  286 (348)
Q Consensus       240 ~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~  286 (348)
                      |.+.  .++.+..+++|++|++++|.++ .++ .+..+++|++|+|+
T Consensus       166 n~l~--~i~~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         166 NQIS--DIVPLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             SCCC--CCGGGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEE
T ss_pred             cccc--ccccccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEcc
Confidence            5542  2223444455555555555544 222 34444555555543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1e-15  Score=123.62  Aligned_cols=12  Identities=25%  Similarity=0.304  Sum_probs=5.0

Q ss_pred             CCCCcEEecCCC
Q 035693           97 LPRLVTLDLSSR  108 (348)
Q Consensus        97 ~~~L~~L~l~~~  108 (348)
                      ++++++|++++|
T Consensus        39 l~~l~~L~l~~~   50 (199)
T d2omxa2          39 LDQVTTLQADRL   50 (199)
T ss_dssp             HTTCCEEECTTS
T ss_pred             hcCCCEEECCCC
Confidence            334444444444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.8e-16  Score=126.99  Aligned_cols=163  Identities=29%  Similarity=0.417  Sum_probs=107.5

Q ss_pred             cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCC
Q 035693          127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLL  206 (348)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~  206 (348)
                      ..++++++|+++++.+.+..     .+..+++|++|++++|.+++..+  +..+++|++|++++|....  + ..+.+++
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~-----~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~--~-~~l~~l~  106 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSID-----GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--I-TPLANLT  106 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCT-----TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--C-GGGTTCT
T ss_pred             HHhcCCCEEECCCCCCCCcc-----ccccCCCcCcCccccccccCccc--ccCCccccccccccccccc--c-ccccccc
Confidence            44567777777777766532     35567777777777777766332  6677777777777764322  1 2366777


Q ss_pred             CCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeec
Q 035693          207 NLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVS  286 (348)
Q Consensus       207 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~  286 (348)
                      .|+.++++++....  .+.+..+++|+.|++++|.+.  ..+.+..+++|++|++.+|.+++ ++ .++.+++|++|+++
T Consensus       107 ~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~--~~~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls  180 (199)
T d2omxa2         107 NLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTIS--DISALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDIS  180 (199)
T ss_dssp             TCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCC--CCGGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECC
T ss_pred             cccccccccccccc--ccccchhhhhHHhhhhhhhhc--ccccccccccccccccccccccC-Cc-cccCCCCCCEEECC
Confidence            77777777776653  234566777777887777653  34456667778888888877763 33 36677788888888


Q ss_pred             CCccCCCCcccccCCCCCCEE
Q 035693          287 SCNFTRPIPTSMANLTQLFHL  307 (348)
Q Consensus       287 ~n~l~~~~~~~l~~~~~L~~L  307 (348)
                      +|++++ ++ .++++++|+.|
T Consensus       181 ~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         181 SNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             SSCCCC-CG-GGGGCTTCSEE
T ss_pred             CCCCCC-Cc-cccCCCCCCcC
Confidence            888776 33 35667777664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.3e-16  Score=131.51  Aligned_cols=200  Identities=17%  Similarity=0.090  Sum_probs=103.1

Q ss_pred             CCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcc-hHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCC
Q 035693          131 ELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPI-NHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLT  209 (348)
Q Consensus       131 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  209 (348)
                      ++++|++++|.+.....   ..|.++++|++|++++|.+...+ +..+..++.++++.+..+.......+..+.++++|+
T Consensus        30 ~l~~L~Ls~n~i~~l~~---~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~  106 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQK---GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  106 (242)
T ss_dssp             CCSEEEEESCCCCEECT---TTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCC
T ss_pred             CCCEEECcCCcCCccCh---hHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccc
Confidence            34444444444443332   23444555555555555544322 223444555555555443223333334455666666


Q ss_pred             EEEccCCcCCCcccc-cccCCCCccEEEccCCCCCCCCCCCCCCC-CCCcEEEcccCCCCCCCCccccCCCCCCEE-eec
Q 035693          210 TLDLSQCDLHGKFPE-KVLQVPTLETLDLSYNSLLQGSLPHFPKN-SSLRNLNLKNTSFSGKLPDSIGNLENLASV-DVS  286 (348)
Q Consensus       210 ~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L-~L~  286 (348)
                      ++++.++.+....+. .+..++.+..+...++.+.......+..+ ..++.|++++|+++ .++.......++.++ .+.
T Consensus       107 ~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~  185 (242)
T d1xwdc1         107 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSD  185 (242)
T ss_dssp             EEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTTTTTCCEEEEECTT
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-ccccccccchhhhcccccc
Confidence            666666655422111 12223444444445544444444444443 36777777777776 333333333444444 456


Q ss_pred             CCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecc
Q 035693          287 SCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLS  335 (348)
Q Consensus       287 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~  335 (348)
                      +|.++...+..+.++++|++|++++|++.. +|...+..++.|+++++.
T Consensus       186 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         186 NNNLEELPNDVFHGASGPVILDISRTRIHS-LPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CTTCCCCCTTTTTTSCCCSEEECTTSCCCC-CCSSSCTTCCEEESSSEE
T ss_pred             ccccccccHHHhcCCCCCCEEECCCCcCCc-cCHHHHcCCcccccCcCC
Confidence            667776444556777888888888888764 555544444555555553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.7e-16  Score=131.17  Aligned_cols=78  Identities=17%  Similarity=0.084  Sum_probs=36.4

Q ss_pred             CccEEEccCCCCCCCCCCCCCCCCCCcEE-EcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeC
Q 035693          231 TLETLDLSYNSLLQGSLPHFPKNSSLRNL-NLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDF  309 (348)
Q Consensus       231 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L-~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l  309 (348)
                      .++.|++.+|++.......+. ...++++ .+++|+++...+..+..+++|++|++++|++....+..+.++++|+.+++
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cceeeeccccccccccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            455555555554333222222 2233333 34445555222234555666666666666666533334444444444443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.8e-18  Score=156.41  Aligned_cols=136  Identities=21%  Similarity=0.193  Sum_probs=59.7

Q ss_pred             CCCCCEEEccCCcCCCc----ccccccCCCCccEEEccCCCCCCCCCCCC-----CCCCCCcEEEcccCCCCCCCCc---
Q 035693          205 LLNLTTLDLSQCDLHGK----FPEKVLQVPTLETLDLSYNSLLQGSLPHF-----PKNSSLRNLNLKNTSFSGKLPD---  272 (348)
Q Consensus       205 l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~-----~~~~~L~~L~ls~n~~~~~~~~---  272 (348)
                      ...++.+++++|.+...    ....+...+.++.+++++|.+.......+     .....|+.++++++.+......   
T Consensus       254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~  333 (460)
T d1z7xw1         254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  333 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcc
Confidence            44677777777765421    12223345566666666665432221111     1123455555555554422111   


Q ss_pred             -cccCCCCCCEEeecCCccCCC----Cccccc-CCCCCCEEeCCCCccCCccCchh---hhhhcCCCeeecccCccc
Q 035693          273 -SIGNLENLASVDVSSCNFTRP----IPTSMA-NLTQLFHLDFSSNHFSDPIPTLR---LYMSRNLNYLNLSSNDLT  340 (348)
Q Consensus       273 -~l~~~~~L~~L~L~~n~l~~~----~~~~l~-~~~~L~~L~l~~n~l~~~~~~~~---~~~~~~L~~L~l~~n~l~  340 (348)
                       .+...++|++|+|++|.+.+.    ++..+. ..+.|++|+|++|.+++.....+   +..+++|++|+|++|+|+
T Consensus       334 ~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         334 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             cccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence             112334555555555555431    122221 23445555555555543211111   112245555555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.1e-16  Score=136.88  Aligned_cols=211  Identities=21%  Similarity=0.214  Sum_probs=118.1

Q ss_pred             CCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCC-hhhhhhcCC
Q 035693          128 NLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQ-VPEFVANLL  206 (348)
Q Consensus       128 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~l~  206 (348)
                      ...+|++|+++++.+++...  ...+..+++|++|++.+|.+.+..+..+..+++|++|++++|..++.. +.....+++
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l--~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTL--HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHH--HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             cCCCCCEEECCCCccCHHHH--HHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence            34567777777776553221  233566777777777777766666666667777777777776444432 223345667


Q ss_pred             CCCEEEccCCc-CCCc-ccccc-cCCCCccEEEccCCC--CCCCCCCCCC-CCCCCcEEEcccCC-CCCCCCccccCCCC
Q 035693          207 NLTTLDLSQCD-LHGK-FPEKV-LQVPTLETLDLSYNS--LLQGSLPHFP-KNSSLRNLNLKNTS-FSGKLPDSIGNLEN  279 (348)
Q Consensus       207 ~L~~L~l~~~~-~~~~-~~~~l-~~~~~L~~L~l~~~~--l~~~~~~~~~-~~~~L~~L~ls~n~-~~~~~~~~l~~~~~  279 (348)
                      +|++|++++|. ++.. ....+ ...+.|+.|+++++.  +....+..+. .+++|++|++++|. +++.....+..+++
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~  201 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY  201 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCc
Confidence            77777777653 2221 11112 224567777776652  2222222222 25677777777753 44444555666677


Q ss_pred             CCEEeecCC-ccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCC
Q 035693          280 LASVDVSSC-NFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGIS  344 (348)
Q Consensus       280 L~~L~L~~n-~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip  344 (348)
                      |++|++++| .+++.....+.++++|+.|++++| +.+..-..+..   .+..|.+..+.+++..+
T Consensus       202 L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~---~lp~L~i~~~~ls~~~~  263 (284)
T d2astb2         202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE---ALPHLQINCSHFTTIAR  263 (284)
T ss_dssp             CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHH---HSTTSEESCCCSCCTTC
T ss_pred             CCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHH---hCccccccCccCCCCCC
Confidence            777777775 455544455666777777777776 43322222222   23334455556664433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=2.9e-15  Score=121.90  Aligned_cols=167  Identities=22%  Similarity=0.237  Sum_probs=113.6

Q ss_pred             ccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhh
Q 035693           73 FSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA  152 (348)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  152 (348)
                      ..+..|+.|+++++.+.+......+++|++|++++|.++.       ++   .+..+++|+.|++++|++++..     .
T Consensus        43 ~~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~-------l~---~~~~l~~L~~L~l~~n~i~~l~-----~  107 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-------IK---PLANLKNLGWLFLDENKVKDLS-----S  107 (210)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-------CG---GGTTCTTCCEEECCSSCCCCGG-----G
T ss_pred             HHhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccC-------cc---ccccCccccccccccccccccc-----c
Confidence            3566777777777777665333467778888887776532       12   1566778888888888776532     3


Q ss_pred             hCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCc
Q 035693          153 MSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTL  232 (348)
Q Consensus       153 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L  232 (348)
                      +..+++|+.|++.+|.+..  ...+..+++++.+++++|.. ..  ...+..+++|+++++++|.+.+ ++ .+..+++|
T Consensus       108 l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l-~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L  180 (210)
T d1h6ta2         108 LKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKI-TD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKL  180 (210)
T ss_dssp             GTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCC-CC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTC
T ss_pred             ccccccccccccccccccc--cccccccccccccccccccc-cc--cccccccccccccccccccccc-cc-cccCCCCC
Confidence            6677788888888877654  23566777888888877743 22  2345667788888888887763 33 36777888


Q ss_pred             cEEEccCCCCCCCCCCCCCCCCCCcEEEccc
Q 035693          233 ETLDLSYNSLLQGSLPHFPKNSSLRNLNLKN  263 (348)
Q Consensus       233 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~  263 (348)
                      ++|++++|.+..  ++.+..+++|++|++++
T Consensus       181 ~~L~Ls~N~i~~--l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         181 QNLYLSKNHISD--LRALAGLKNLDVLELFS  209 (210)
T ss_dssp             CEEECCSSCCCB--CGGGTTCTTCSEEEEEE
T ss_pred             CEEECCCCCCCC--ChhhcCCCCCCEEEccC
Confidence            888888887643  45567777888888764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.63  E-value=8e-17  Score=141.62  Aligned_cols=194  Identities=18%  Similarity=0.085  Sum_probs=101.1

Q ss_pred             ccccccccCEEeCCCCCCCCCC------CCCCCCCCcEEecCCCCCCCCcceeecCC-----ChhhhcCCCCCcEEEccC
Q 035693           71 GLFSLQYLQSLNLGFTLFYGFP------MPSSLPRLVTLDLSSREPISGFSWRLEIP-----NFNFFQNLTELRELYLDN  139 (348)
Q Consensus        71 ~l~~~~~L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~~~~~l~~L~~L~l~~  139 (348)
                      .+.+...|+.|++++|.+.+.+      .....++|+.|+++++......   ...+     -.+.+..+++|++|++++
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~---~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK---DEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCG---GGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccc---cccchHHHHHHHHHhhCCCcccccccc
Confidence            5677888889999888776542      1225677888888776532110   0000     013355667777777777


Q ss_pred             cCCCCcch-hhhhhhCCCCCCcEEEccCccCCCcchHH-------------hhhccCCCEEEcccCCCCCC---Chhhhh
Q 035693          140 VDLSGRRT-EWCKAMSFLPNLQVLNLSNCLLSDPINHH-------------LANLLSLSVIRLRDNHAVSC---QVPEFV  202 (348)
Q Consensus       140 ~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~---~~~~~l  202 (348)
                      |.++.... .+...+...++|++|++++|.+.......             ....+.|+.+.++++.....   .+...+
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            77665432 22334455677777777777654321111             12235566666666533221   122334


Q ss_pred             hcCCCCCEEEccCCcCCCc-----ccccccCCCCccEEEccCCCCCCCCCC----CCCCCCCCcEEEcccCCCC
Q 035693          203 ANLLNLTTLDLSQCDLHGK-----FPEKVLQVPTLETLDLSYNSLLQGSLP----HFPKNSSLRNLNLKNTSFS  267 (348)
Q Consensus       203 ~~l~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~L~~L~ls~n~~~  267 (348)
                      ...+.+++|+++.|.+...     +...+...++|+.|++++|.+......    .+..+++|++|++++|.+.
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            4555666666666655421     122334445555555555544322211    1223445555555555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.61  E-value=1.4e-13  Score=120.54  Aligned_cols=233  Identities=24%  Similarity=0.291  Sum_probs=156.4

Q ss_pred             cccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCC
Q 035693           76 QYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSF  155 (348)
Q Consensus        76 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  155 (348)
                      .++++|+++++.++.  +|..+++|++|++++|.++       .+|..     ..+|+.|++++|+++....     +  
T Consensus        38 ~~l~~LdLs~~~L~~--lp~~~~~L~~L~Ls~N~l~-------~lp~~-----~~~L~~L~l~~n~l~~l~~-----l--   96 (353)
T d1jl5a_          38 RQAHELELNNLGLSS--LPELPPHLESLVASCNSLT-------ELPEL-----PQSLKSLLVDNNNLKALSD-----L--   96 (353)
T ss_dssp             HTCSEEECTTSCCSC--CCSCCTTCSEEECCSSCCS-------SCCCC-----CTTCCEEECCSSCCSCCCS-----C--
T ss_pred             cCCCEEEeCCCCCCC--CCCCCCCCCEEECCCCCCc-------ccccc-----hhhhhhhhhhhcccchhhh-----h--
Confidence            479999999999986  7888899999999999874       34432     4689999999999875432     1  


Q ss_pred             CCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEE
Q 035693          156 LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETL  235 (348)
Q Consensus       156 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  235 (348)
                      .+.|++|++++|.+.. +| .+..+++|+.|+++++....  .+   .....+..+.+..+...  ....+..++.++.+
T Consensus        97 p~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~~~~~~--~~---~~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L  167 (353)
T d1jl5a_          97 PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK--LP---DLPPSLEFIAAGNNQLE--ELPELQNLPFLTAI  167 (353)
T ss_dssp             CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCS--SCCCCTTCTTCCEE
T ss_pred             cccccccccccccccc-cc-chhhhccceeeccccccccc--cc---cccccccchhhcccccc--ccccccccccceec
Confidence            2469999999999886 45 35778999999999884322  11   23456777887766554  23345667778888


Q ss_pred             EccCCCCCCC------------------CCCCCCCCCCCcEEEcccCCCCCCCCcccc-----------------CCCCC
Q 035693          236 DLSYNSLLQG------------------SLPHFPKNSSLRNLNLKNTSFSGKLPDSIG-----------------NLENL  280 (348)
Q Consensus       236 ~l~~~~l~~~------------------~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~-----------------~~~~L  280 (348)
                      .+.++.....                  ..+.+..++.|+.+++++|.... ++....                 ....+
T Consensus       168 ~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l  246 (353)
T d1jl5a_         168 YADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSL  246 (353)
T ss_dssp             ECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence            8777654221                  12233446788999999887652 222110                 11223


Q ss_pred             CEEeecCCccCC----------------CCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCC
Q 035693          281 ASVDVSSCNFTR----------------PIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGIS  344 (348)
Q Consensus       281 ~~L~L~~n~l~~----------------~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip  344 (348)
                      ....+..+.+.+                .+......+++|++|++++|++.. +|..    .++|+.|++++|+|+ .||
T Consensus       247 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~----~~~L~~L~L~~N~L~-~l~  320 (353)
T d1jl5a_         247 TFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL----PPRLERLIASFNHLA-EVP  320 (353)
T ss_dssp             CEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCS-CCC
T ss_pred             cccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccCc-cccc----cCCCCEEECCCCcCC-ccc
Confidence            333333332221                011111235789999999999975 6643    378999999999998 777


Q ss_pred             C
Q 035693          345 S  345 (348)
Q Consensus       345 ~  345 (348)
                      +
T Consensus       321 ~  321 (353)
T d1jl5a_         321 E  321 (353)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=5.8e-16  Score=124.33  Aligned_cols=129  Identities=19%  Similarity=0.174  Sum_probs=62.4

Q ss_pred             CcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCc-chHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCE
Q 035693          132 LRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDP-INHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTT  210 (348)
Q Consensus       132 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  210 (348)
                      .+.++.++++++.++..    +  ..++++|++++|.++.. .+..|..+++|++|++++|. +....+..+..++.|++
T Consensus        10 ~~~v~Cs~~~L~~iP~~----l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~~~~~~~~~L~~   82 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRD----I--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             TTEEECTTSCCSSCCSC----C--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCE
T ss_pred             CCEEEEeCCCcCccCCC----C--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccc-cccccccccccccccce
Confidence            34566666666544321    1  14566666666666532 23344555555555555552 22233444444555555


Q ss_pred             EEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCC
Q 035693          211 LDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFS  267 (348)
Q Consensus       211 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~  267 (348)
                      |++++|.+....+..|..+++|++|++++|.+.......|..+++|++|++++|.+.
T Consensus        83 L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             eeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            555555554333334444555555555555444434444444444455554444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.60  E-value=3e-15  Score=120.08  Aligned_cols=174  Identities=20%  Similarity=0.233  Sum_probs=114.6

Q ss_pred             CcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEcc
Q 035693          159 LQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLS  238 (348)
Q Consensus       159 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  238 (348)
                      .++++.+++.++. +|..+.  +.+++|++++|.+........|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCc-cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            4577787777775 454432  5778888888844333345566777888888888888776666677777788888888


Q ss_pred             CCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCcc
Q 035693          239 YNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPI  318 (348)
Q Consensus       239 ~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~  318 (348)
                      +|++.......|..+++|++|+|++|++++..+.+|..+++|++|+|++|.+........ -...++.+.+..+.+.+..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCC
Confidence            887766666677777788888888888775556667777788888888877765221111 1112444555666666544


Q ss_pred             CchhhhhhcCCCeeecccCccc
Q 035693          319 PTLRLYMSRNLNYLNLSSNDLT  340 (348)
Q Consensus       319 ~~~~~~~~~~L~~L~l~~n~l~  340 (348)
                      |..+    ..++.++|+.|+++
T Consensus       166 p~~l----~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         166 PSKV----RDVQIKDLPHSEFK  183 (192)
T ss_dssp             STTT----TTSBGGGSCTTTCC
T ss_pred             Chhh----cCCEeeecCHhhCc
Confidence            4322    44566677777664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.3e-17  Score=149.13  Aligned_cols=287  Identities=22%  Similarity=0.176  Sum_probs=169.6

Q ss_pred             CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCC------CCCCCCcEEecCCCCCCCCcceeecCCC
Q 035693           49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMP------SSLPRLVTLDLSSREPISGFSWRLEIPN  122 (348)
Q Consensus        49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~  122 (348)
                      .+|++||++++ .+.+..-. ..+..++++++|+|++|.+++.+..      ..+++|++|++++|.++..     .+..
T Consensus         2 ~~l~~ld~~~~-~i~~~~~~-~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~-----~~~~   74 (460)
T d1z7xw1           2 LDIQSLDIQCE-ELSDARWA-ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV-----GVHC   74 (460)
T ss_dssp             EEEEEEEEESC-CCCHHHHH-HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH-----HHHH
T ss_pred             CCCCEEEeeCC-cCChHHHH-HHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChH-----HHHH
Confidence            36899999999 77543211 1466889999999999998764221      2899999999999986421     0000


Q ss_pred             h-hhhc-CCCCCcEEEccCcCCCCcchh-hhhhhCCCCCCcEEEccCccCCCcch-------------------------
Q 035693          123 F-NFFQ-NLTELRELYLDNVDLSGRRTE-WCKAMSFLPNLQVLNLSNCLLSDPIN-------------------------  174 (348)
Q Consensus       123 ~-~~~~-~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-------------------------  174 (348)
                      . ..+. ...+|++|++++|++++.... +...+..+++|++|++++|.+.....                         
T Consensus        75 l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  154 (460)
T d1z7xw1          75 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS  154 (460)
T ss_dssp             HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccc
Confidence            0 1122 345899999999999875543 33567889999999999886532100                         


Q ss_pred             --------HHhhhc---------------------------------------------------------c--------
Q 035693          175 --------HHLANL---------------------------------------------------------L--------  181 (348)
Q Consensus       175 --------~~~~~~---------------------------------------------------------~--------  181 (348)
                              ..+...                                                         +        
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~  234 (460)
T d1z7xw1         155 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG  234 (460)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred             hhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchh
Confidence                    000111                                                         1        


Q ss_pred             ---------------------CCCEEEcccCCCCCC---ChhhhhhcCCCCCEEEccCCcCCCccc----cccc-CCCCc
Q 035693          182 ---------------------SLSVIRLRDNHAVSC---QVPEFVANLLNLTTLDLSQCDLHGKFP----EKVL-QVPTL  232 (348)
Q Consensus       182 ---------------------~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~-~~~~L  232 (348)
                                           .++.+++++|.....   .....+...+.++.+++++|.+.....    ..+. ....|
T Consensus       235 ~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L  314 (460)
T d1z7xw1         235 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL  314 (460)
T ss_dssp             SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC
T ss_pred             hccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccc
Confidence                                 233333333211110   011223455677777777777653211    1111 23467


Q ss_pred             cEEEccCCCCCCCCCCCCC----CCCCCcEEEcccCCCCCC----CCcccc-CCCCCCEEeecCCccCCC----Cccccc
Q 035693          233 ETLDLSYNSLLQGSLPHFP----KNSSLRNLNLKNTSFSGK----LPDSIG-NLENLASVDVSSCNFTRP----IPTSMA  299 (348)
Q Consensus       233 ~~L~l~~~~l~~~~~~~~~----~~~~L~~L~ls~n~~~~~----~~~~l~-~~~~L~~L~L~~n~l~~~----~~~~l~  299 (348)
                      +.++++++.+.......+.    ..++|++|++++|.+.+.    +...+. ..+.|++|+|++|.+++.    ++..+.
T Consensus       315 ~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  394 (460)
T d1z7xw1         315 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL  394 (460)
T ss_dssp             CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred             ccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHh
Confidence            7777777766544433332    255777888877776532    222222 345677888888877642    334455


Q ss_pred             CCCCCCEEeCCCCccCCccCchhhhhh----cCCCeeecccCccccc
Q 035693          300 NLTQLFHLDFSSNHFSDPIPTLRLYMS----RNLNYLNLSSNDLTGG  342 (348)
Q Consensus       300 ~~~~L~~L~l~~n~l~~~~~~~~~~~~----~~L~~L~l~~n~l~g~  342 (348)
                      .+++|++|++++|++++.....+...+    ..|+.|++.+|.++++
T Consensus       395 ~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         395 ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             HCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             cCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence            567788888888877654333332221    3577788777777643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.52  E-value=5.2e-15  Score=129.87  Aligned_cols=242  Identities=14%  Similarity=0.151  Sum_probs=170.2

Q ss_pred             CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcc-------hhhhhhhCCCCCCcEEEccCcc
Q 035693           96 SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRR-------TEWCKAMSFLPNLQVLNLSNCL  168 (348)
Q Consensus        96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-------~~~~~~~~~~~~L~~L~l~~~~  168 (348)
                      ....|++|++++|.+......  .+.  ..+...+.|+.++++++......       ..+...+..+++|++|++++|.
T Consensus        29 ~~~~l~~L~Ls~n~i~~~~~~--~l~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          29 EDDSVKEIVLSGNTIGTEAAR--WLS--ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HCSCCCEEECTTSEECHHHHH--HHH--HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             hCCCCCEEECcCCcCCHHHHH--HHH--HHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            688999999999975432100  011  33677899999999987654321       1234556778999999999999


Q ss_pred             CCCc----chHHhhhccCCCEEEcccCCCCCCC---hhhh---------hhcCCCCCEEEccCCcCCCc----ccccccC
Q 035693          169 LSDP----INHHLANLLSLSVIRLRDNHAVSCQ---VPEF---------VANLLNLTTLDLSQCDLHGK----FPEKVLQ  228 (348)
Q Consensus       169 ~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~---------l~~l~~L~~L~l~~~~~~~~----~~~~l~~  228 (348)
                      +...    +...+..+++|++|++++|......   +...         ....+.|+.+.++++.+...    +...+..
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~  184 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  184 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhh
Confidence            8764    4455667899999999998432110   1111         23567899999999987642    3334556


Q ss_pred             CCCccEEEccCCCCCCCC-----CCCCCCCCCCcEEEcccCCCCCC----CCccccCCCCCCEEeecCCccCCC----Cc
Q 035693          229 VPTLETLDLSYNSLLQGS-----LPHFPKNSSLRNLNLKNTSFSGK----LPDSIGNLENLASVDVSSCNFTRP----IP  295 (348)
Q Consensus       229 ~~~L~~L~l~~~~l~~~~-----~~~~~~~~~L~~L~ls~n~~~~~----~~~~l~~~~~L~~L~L~~n~l~~~----~~  295 (348)
                      .+.|++|++++|.+....     ...+...++|+.|++++|.++..    +...+..+++|++|++++|.+.+.    +.
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            789999999999875432     23455588999999999987532    334566789999999999999863    22


Q ss_pred             ccccC--CCCCCEEeCCCCccCCccCchhh----hhhcCCCeeecccCcccc
Q 035693          296 TSMAN--LTQLFHLDFSSNHFSDPIPTLRL----YMSRNLNYLNLSSNDLTG  341 (348)
Q Consensus       296 ~~l~~--~~~L~~L~l~~n~l~~~~~~~~~----~~~~~L~~L~l~~n~l~g  341 (348)
                      ..+..  .+.|++|++++|++.......+.    ...+.|+.|+|++|.++.
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            33332  46899999999998764323222    234789999999999864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8.5e-14  Score=108.00  Aligned_cols=129  Identities=17%  Similarity=0.191  Sum_probs=93.6

Q ss_pred             hhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCC
Q 035693          202 VANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLA  281 (348)
Q Consensus       202 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~  281 (348)
                      +.+...+++|++++|.++ .++..+..+++|+.|++++|.+..  ++.+..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~--l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE--ECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc--cCCcccCcchhhhhcccccccCCCccccccccccc
Confidence            345567788888888887 445555667888888888887643  35577788888999999888744344456788999


Q ss_pred             EEeecCCccCCCC-cccccCCCCCCEEeCCCCccCCccCc---hhhhhhcCCCeeec
Q 035693          282 SVDVSSCNFTRPI-PTSMANLTQLFHLDFSSNHFSDPIPT---LRLYMSRNLNYLNL  334 (348)
Q Consensus       282 ~L~L~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~l  334 (348)
                      +|++++|.+.... ...+..+++|+.+++++|++.. .+.   ..+..+|+|++||-
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETT
T ss_pred             cceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeCC
Confidence            9999999887621 1356778899999999998865 443   23455688888873

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.1e-13  Score=105.76  Aligned_cols=129  Identities=20%  Similarity=0.141  Sum_probs=66.3

Q ss_pred             ccccccccCEEeCCCCCCCCCCCC-CCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhh
Q 035693           71 GLFSLQYLQSLNLGFTLFYGFPMP-SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEW  149 (348)
Q Consensus        71 ~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  149 (348)
                      .+.++..++.|++++|.|+...-. ..+++|++|++++|.+..       ++   .+..+++|++|++++|+++...+  
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~-------l~---~~~~l~~L~~L~ls~N~i~~l~~--   80 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-------LD---GFPLLRRLKTLLVNNNRICRIGE--   80 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-------EC---CCCCCSSCCEEECCSSCCCEECS--
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc-------cC---CcccCcchhhhhcccccccCCCc--
Confidence            355666777777777777664111 145666666666665431       11   14555666666666666554433  


Q ss_pred             hhhhCCCCCCcEEEccCccCCCcc-hHHhhhccCCCEEEcccCCCCCCC--hhhhhhcCCCCCEEE
Q 035693          150 CKAMSFLPNLQVLNLSNCLLSDPI-NHHLANLLSLSVIRLRDNHAVSCQ--VPEFVANLLNLTTLD  212 (348)
Q Consensus       150 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~l~~L~~L~  212 (348)
                       ..+..+++|++|++++|.+.... ...+..+++|++|++++|+.....  -...+..+++|++|+
T Consensus        81 -~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          81 -GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             -CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             -cccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence             12334556666666666555421 134455555666666555332111  012344555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=3.8e-13  Score=99.25  Aligned_cols=119  Identities=18%  Similarity=0.236  Sum_probs=78.0

Q ss_pred             CEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCC
Q 035693          209 TTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSC  288 (348)
Q Consensus       209 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n  288 (348)
                      |+|++++|.++ .++ .+..++.|++|++++|.+... ++.+..+++|+.|++++|.++ .++ .++.+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~l-p~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCcc-hhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            46778888776 443 366777788888888776432 234666777888888888777 344 4667777888888888


Q ss_pred             ccCCCC-cccccCCCCCCEEeCCCCccCCc--cCchhhhhhcCCCee
Q 035693          289 NFTRPI-PTSMANLTQLFHLDFSSNHFSDP--IPTLRLYMSRNLNYL  332 (348)
Q Consensus       289 ~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~~L~~L  332 (348)
                      ++.+.. ...+..+++|+.+++++|++.+.  .+.......|+|+.|
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            777632 24566677788888888777642  233344445666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=1.9e-12  Score=95.39  Aligned_cols=15  Identities=53%  Similarity=0.501  Sum_probs=6.0

Q ss_pred             CCCCCcEEEccCccC
Q 035693          155 FLPNLQVLNLSNCLL  169 (348)
Q Consensus       155 ~~~~L~~L~l~~~~~  169 (348)
                      .+++|++|++++|.+
T Consensus        63 ~l~~L~~L~l~~N~i   77 (124)
T d1dcea3          63 NLPRLQELLLCNNRL   77 (124)
T ss_dssp             TCSSCCEEECCSSCC
T ss_pred             cccccCeEECCCCcc
Confidence            333444444444433

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=1.3e-13  Score=110.58  Aligned_cols=107  Identities=24%  Similarity=0.205  Sum_probs=62.5

Q ss_pred             ccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhh
Q 035693           71 GLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWC  150 (348)
Q Consensus        71 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  150 (348)
                      .+..+++|+.|++++|.+++......+++|++|++++|.+.       .++..  ...+++|+.|++++|+++..     
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~-------~i~~~--~~~~~~L~~L~l~~N~i~~l-----  108 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK-------KIENL--DAVADTLEELWISYNQIASL-----  108 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEEC-------SCSSH--HHHHHHCCEEECSEEECCCH-----
T ss_pred             HHhcccccceeECcccCCCCcccccCCccccChhhcccccc-------ccccc--cccccccccccccccccccc-----
Confidence            57778888888888887776421125666777777666542       22222  33344566666666666542     


Q ss_pred             hhhCCCCCCcEEEccCccCCCcc-hHHhhhccCCCEEEcccC
Q 035693          151 KAMSFLPNLQVLNLSNCLLSDPI-NHHLANLLSLSVIRLRDN  191 (348)
Q Consensus       151 ~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~  191 (348)
                      ..+..+++|++|++++|.++... ...+..+++|+.|++++|
T Consensus       109 ~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         109 SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             ccccccccccccccccchhccccccccccCCCccceeecCCC
Confidence            12444556666666666665521 134555666666666665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.8e-10  Score=88.27  Aligned_cols=107  Identities=16%  Similarity=0.099  Sum_probs=77.5

Q ss_pred             CCEEEccCCcCCCcccccccCCCCccEEEccCCC-CCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeec
Q 035693          208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNS-LLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVS  286 (348)
Q Consensus       208 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~  286 (348)
                      .+.++..++.+. ..|..+..+++|++|++.+++ +.......|..+++|+.|++++|+++...+.+|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            345666666665 456667777788888887654 655566677778888888888888875556778888888888888


Q ss_pred             CCccCCCCcccccCCCCCCEEeCCCCccCC
Q 035693          287 SCNFTRPIPTSMANLTQLFHLDFSSNHFSD  316 (348)
Q Consensus       287 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~  316 (348)
                      +|++....+..+ ...+|+.|+|++|++..
T Consensus        89 ~N~l~~l~~~~~-~~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          89 FNALESLSWKTV-QGLSLQELVLSGNPLHC  117 (156)
T ss_dssp             SSCCSCCCSTTT-CSCCCCEEECCSSCCCC
T ss_pred             CCCCcccChhhh-ccccccccccCCCcccC
Confidence            888887433343 44578888888888864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.12  E-value=9.7e-13  Score=105.48  Aligned_cols=129  Identities=20%  Similarity=0.213  Sum_probs=68.6

Q ss_pred             hhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCC-CCCCcEEEcccCCCCCCCCccccCC
Q 035693          199 PEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPK-NSSLRNLNLKNTSFSGKLPDSIGNL  277 (348)
Q Consensus       199 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~ls~n~~~~~~~~~l~~~  277 (348)
                      +..+..+++|++|++++|.+. .++ .+..+++|+.|++++|.+..  ++.+.. .+.|+.|++++|.++ .+ ..+..+
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~i~-~l-~~~~~l  114 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIA-SL-SGIEKL  114 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEECC-CH-HHHHHH
T ss_pred             hhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhccccccc--cccccccccccccccccccccc-cc-cccccc
Confidence            344555555555555555554 222 34455555555555554421  111111 345666666666665 22 234556


Q ss_pred             CCCCEEeecCCccCCCC-cccccCCCCCCEEeCCCCccCCccCch---------hhhhhcCCCeee
Q 035693          278 ENLASVDVSSCNFTRPI-PTSMANLTQLFHLDFSSNHFSDPIPTL---------RLYMSRNLNYLN  333 (348)
Q Consensus       278 ~~L~~L~L~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~~---------~~~~~~~L~~L~  333 (348)
                      ++|+.|++++|++.... ...+..+++|+.|++++|++....+..         +...+|+|+.||
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            67777777777776521 134566777777777777665422211         133446777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=4e-10  Score=86.21  Aligned_cols=108  Identities=20%  Similarity=0.232  Sum_probs=87.6

Q ss_pred             CCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCC-CCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEe
Q 035693          230 PTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTS-FSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLD  308 (348)
Q Consensus       230 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~-~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~  308 (348)
                      ...+.++..++.+. ..+..+...++|++|+++++. ++..-+.+|..+++|+.|++++|++..+.+.++..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34556777777643 345567778899999998775 7744456788999999999999999997788899999999999


Q ss_pred             CCCCccCCccCchhhhhhcCCCeeecccCccc
Q 035693          309 FSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT  340 (348)
Q Consensus       309 l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  340 (348)
                      |++|++.. ++...+.. .+|+.|+|++|++.
T Consensus        87 Ls~N~l~~-l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALES-LSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSC-CCSTTTCS-CCCCEEECCSSCCC
T ss_pred             ccCCCCcc-cChhhhcc-ccccccccCCCccc
Confidence            99999985 77766665 57999999999873

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.21  E-value=9e-07  Score=67.86  Aligned_cols=66  Identities=17%  Similarity=0.220  Sum_probs=29.3

Q ss_pred             hcCCCCCcEEEccCcCCCCcch-hhhhhhCCCCCCcEEEccCccCCCc----chHHhhhccCCCEEEcccC
Q 035693          126 FQNLTELRELYLDNVDLSGRRT-EWCKAMSFLPNLQVLNLSNCLLSDP----INHHLANLLSLSVIRLRDN  191 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~  191 (348)
                      +...+.|++|++++|.+.+... .+...+...+.|++|++++|.+.+.    +..++...++|++|+++++
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            3444455555555554443211 1222333444555555555555432    2223334445555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.19  E-value=3.4e-06  Score=64.50  Aligned_cols=41  Identities=12%  Similarity=0.092  Sum_probs=17.1

Q ss_pred             cCCCCCcEEEccCcCCCCcch-hhhhhhCCCCCCcEEEccCc
Q 035693          127 QNLTELRELYLDNVDLSGRRT-EWCKAMSFLPNLQVLNLSNC  167 (348)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~  167 (348)
                      ...+.|++|++++|.+++... .+...+...+.|++|++++|
T Consensus        69 ~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          69 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             hhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            334444444444444443221 12233344444444444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=5.8e-07  Score=68.59  Aligned_cols=86  Identities=19%  Similarity=0.147  Sum_probs=52.9

Q ss_pred             CCCCcEEEcccCCCCCC--CCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCc------hhhh
Q 035693          253 NSSLRNLNLKNTSFSGK--LPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPT------LRLY  324 (348)
Q Consensus       253 ~~~L~~L~ls~n~~~~~--~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~------~~~~  324 (348)
                      ++.|++|++++|+++..  ++..+..+++|+.|++++|.+.....-......+|+.+++++|++.+....      .+..
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            45677777777766632  223455677888888888888763322233445688888888888754332      2344


Q ss_pred             hhcCCCeeecccCccc
Q 035693          325 MSRNLNYLNLSSNDLT  340 (348)
Q Consensus       325 ~~~~L~~L~l~~n~l~  340 (348)
                      .+|+|+.||  +..++
T Consensus       144 ~~P~L~~LD--g~~v~  157 (162)
T d1koha1         144 RFPKLLRLD--GHELP  157 (162)
T ss_dssp             TSTTCCEET--TEECC
T ss_pred             HCCCCCEEC--cCCCc
Confidence            557787775  44443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2.2e-07  Score=71.05  Aligned_cols=71  Identities=21%  Similarity=0.232  Sum_probs=54.8

Q ss_pred             cccCCCCCCEEeecCCccCCC--CcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCC
Q 035693          273 SIGNLENLASVDVSSCNFTRP--IPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGIS  344 (348)
Q Consensus       273 ~l~~~~~L~~L~L~~n~l~~~--~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip  344 (348)
                      ....+++|++|++++|+++..  ++..+..+++|+.|++++|.+.+ ++........+|+.|++++|++++...
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcCcc
Confidence            345688999999999999873  34556778999999999999987 444322223679999999999986543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.76  E-value=2.1e-05  Score=59.77  Aligned_cols=113  Identities=15%  Similarity=0.204  Sum_probs=49.1

Q ss_pred             cCCCCCcEEEccC-cCCCCcch-hhhhhhCCCCCCcEEEccCccCCCc----chHHhhhccCCCEEEcccCCCCCCC---
Q 035693          127 QNLTELRELYLDN-VDLSGRRT-EWCKAMSFLPNLQVLNLSNCLLSDP----INHHLANLLSLSVIRLRDNHAVSCQ---  197 (348)
Q Consensus       127 ~~l~~L~~L~l~~-~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~---  197 (348)
                      .+.+.|++|++++ +.+++... .+...+...++|++|++++|.+...    +...+...++++.++++++......   
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3445555555554 23432221 2333444555566666666555432    2223344455555555555322111   


Q ss_pred             hhhhhhcCCCCCEEEcc--CCcCCC----cccccccCCCCccEEEccC
Q 035693          198 VPEFVANLLNLTTLDLS--QCDLHG----KFPEKVLQVPTLETLDLSY  239 (348)
Q Consensus       198 ~~~~l~~l~~L~~L~l~--~~~~~~----~~~~~l~~~~~L~~L~l~~  239 (348)
                      +...+...+.|+++++.  ++.+..    .+.+.+...++|+.|++..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            22333444555554443  233322    2223333445555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.70  E-value=8.4e-05  Score=56.33  Aligned_cols=92  Identities=11%  Similarity=0.167  Sum_probs=50.2

Q ss_pred             hcCCCCCcEEEccCcCCCCcchh-hhhhhCCCCCCcEEEccCccCCCc----chHHhhhccCCCEEEcccCC-CCCC---
Q 035693          126 FQNLTELRELYLDNVDLSGRRTE-WCKAMSFLPNLQVLNLSNCLLSDP----INHHLANLLSLSVIRLRDNH-AVSC---  196 (348)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~-~~~~---  196 (348)
                      +...++|++|++++|.+++.... +...+...+.++++++.+|.+...    +...+...++|+.++|..+. .+..   
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~  121 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  121 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence            45566677777777766543222 233445566677777777666543    23444555667766554321 1111   


Q ss_pred             -ChhhhhhcCCCCCEEEccCCc
Q 035693          197 -QVPEFVANLLNLTTLDLSQCD  217 (348)
Q Consensus       197 -~~~~~l~~l~~L~~L~l~~~~  217 (348)
                       .+...+...+.|+.|++..+.
T Consensus       122 ~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         122 MEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHhCCCcCEEeCcCCC
Confidence             233445566677777766543