Citrus Sinensis ID: 035702

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MPNTSISISISCLAILIWCFSLLLINSPGFSVGQTNETDRLALLTIKSQLHDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccccccccccccEEEEEccccccEEEEEcccccccEEccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccEEEccccEEEEcccccccccccccEEEccccccEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHcHHHHHHHHHHHHHHHHHHccHccccccccHHHHHHHHHHHcccccccccccccccccccEEEEEcccccccEEEEEEccccccccccccHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHcHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHcHcccHccc
Coil and Loop (DISEMBL)
MPNTSISISISCLAILIWCFSLLlinspgfsvgqtneTDRLALLTIKsqlhdpsgvtsswnNTINLCLWtgvtcghrhqrvtelnlssqriggilspyvgnlSFLRYINladngfhgeipqEIGNLLRLEklalpnnsfsgtiptnlsrcsnliyfhvgnnklegqipKEIGSLLKLQTLALYYNYLTRQLpdfignlsale
Flexible Loop (DISEMBL)
MPNTSISISISCLAILIWCFSLLLINSPGFSVGQTNETDRLALLTIKSQLHDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTelnlssqriGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE
Low Complexity Region (SEG)
MPNTsisisisCLAILIWCFSLLLINSPGFSVGQTNETDRLALLTIKSQLHDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE
Disordered region (IsUnstruct)
*****ISISISCLAILIWCFSLLLINSPGFSVGQTNETDRLALLTIKSQLHDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGN*****
Disordered Region (DISOPRED)
**********SCLAILIWCFSLLLINSPGFSVGQTNETDRLALLTIKSQLHDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE
Disordered Region (DISEMBL)
MPNTSISISISCLAILIWCFSLLLINSPGFSVGQTNETDRLALLTIKSQLHDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE
Disordered Region (DISPRO)
**NTSISISISCLAILIWCFSLLLINSPGFSVGQTNETDRLALLTIKSQLHDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNL****
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPNTSISISISCLAILIWCFSLLLINSPGFSVGQTNETDRLALLTIKSQLHDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
C0LGP4	1010	Probable LRR receptor-lik	yes	no	0.871	0.174	0.469	8e-37
Q9SD62	1025	Putative receptor-like pr	no	no	0.831	0.163	0.514	1e-36
C0LGT6	1031	LRR receptor-like serine/	no	no	0.831	0.162	0.464	8e-35
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.787	0.144	0.425	5e-25
O49318	1124	Probable leucine-rich rep	no	no	0.811	0.145	0.410	3e-24
Q9LFS4	638	Protein NSP-INTERACTING K	no	no	0.752	0.238	0.409	1e-23
Q9FL28	1173	LRR receptor-like serine/	no	no	0.816	0.140	0.371	2e-23
Q0WVM4	634	Probable LRR receptor-lik	no	no	0.752	0.239	0.402	2e-23
Q8VYT3	648	Probable LRR receptor-lik	no	no	0.915	0.285	0.350	2e-23
Q8RY65	635	Protein NSP-INTERACTING K	no	no	0.742	0.236	0.411	5e-23

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  153 bits (386), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 115/181 (63%), Gaps = 5/181 (2%)

Query: 23  LLINSPGFSVGQTNETDRLALLTIKSQL-HDPSGVTSSWNNTINLCLWTGVTCGHRHQRV 81
           +L+ + GF    T+ETDR ALL  KSQ+  D   V SSWN++  LC W GVTCG +++RV
Sbjct: 13  MLLETHGF----TDETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRV 68

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
           T L L   ++GG++SP +GNLSFL  ++L +N F G IPQE+G L RLE L +  N   G
Sbjct: 69  THLELGRLQLGGVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRG 128

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
            IP  L  CS L+   + +N+L G +P E+GSL  L  L LY N +  +LP  +GNL+ L
Sbjct: 129 PIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLL 188

Query: 202 E 202
           E
Sbjct: 189 E 189

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  152 bits (384), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/169 (51%), Positives = 116/169 (68%), Gaps = 1/169 (0%)

Query: 35  TNETDRLALLTIKSQLHDPSGVT-SSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGG 93
           T ETD+ ALL  KSQ+ + S V   SWN+++ LC WTGV CG +H+RVT ++L   ++ G
Sbjct: 36  TEETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTG 95

Query: 94  ILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNL 153
           ++SP+VGNLSFLR +NLADN FHG IP E+GNL RL+ L + NN F G IP  LS CS+L
Sbjct: 96  VVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSL 155

Query: 154 IYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
               + +N LE  +P E GSL KL  L+L  N LT + P  +GNL++L+
Sbjct: 156 STLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQ 204

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  146 bits (369), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 107/170 (62%), Gaps = 2/170 (1%)

Query: 35  TNETDRLALLTIKSQL--HDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIG 92
           +NETD  ALL  KSQ+  ++   V +SWN++   C W GVTCG R +RV  LNL   ++ 
Sbjct: 27  SNETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLT 86

Query: 93  GILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSN 152
           G++SP +GNLSFLR +NLADN F   IPQ++G L RL+ L +  N   G IP++LS CS 
Sbjct: 87  GVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSR 146

Query: 153 LIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
           L    + +N L   +P E+GSL KL  L L  N LT   P  +GNL++L+
Sbjct: 147 LSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQ 196

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  114 bits (284), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 93/162 (57%), Gaps = 3/162 (1%)

Query: 43  LLTIKSQLHDPSGVTSSWNNTINL-CLWTGVTCGH--RHQRVTELNLSSQRIGGILSPYV 99
           LL IKS+  D      +WN+  ++ C WTGV C +      V  LNLSS  + G LSP +
Sbjct: 34  LLEIKSKFVDAKQNLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSGKLSPSI 93

Query: 100 GNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG 159
           G L  L+ ++L+ NG  G+IP+EIGN   LE L L NN F G IP  + +  +L    + 
Sbjct: 94  GGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIY 153

Query: 160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
           NN++ G +P EIG+LL L  L  Y N ++ QLP  IGNL  L
Sbjct: 154 NNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRL 195

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  111 bits (278), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/173 (41%), Positives = 97/173 (56%), Gaps = 9/173 (5%)

Query: 38  TDRLALLTIKSQ-LHDPSGVTSSWNNTINL-CLWTGVTCGHRHQR-------VTELNLSS 88
           +D   LL +K++   D      +WN      C W GV C  +          VT L+LSS
Sbjct: 35  SDGQFLLELKNRGFQDSLNRLHNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTSLDLSS 94

Query: 89  QRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLS 148
             + GI+SP +G L  L Y+NLA N   G+IP+EIGN  +LE + L NN F G+IP  ++
Sbjct: 95  MNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEIN 154

Query: 149 RCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
           + S L  F++ NNKL G +P+EIG L  L+ L  Y N LT  LP  +GNL+ L
Sbjct: 155 KLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKL 207

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LFS4|NIK1_ARATH Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis thaliana GN=NIK1 PE=1 SV=1

 Score =  109 bits (273), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 88/154 (57%), Gaps = 2/154 (1%)

Query: 42  ALLTIKSQLHDPSGVTSSWN-NTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVG 100
           AL+ IK+ LHDP GV  +W+ + ++ C WT VTC   +  V  L   SQ + G LSP + 
Sbjct: 44  ALMDIKASLHDPHGVLDNWDRDAVDPCSWTMVTCSSEN-FVIGLGTPSQNLSGTLSPSIT 102

Query: 101 NLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGN 160
           NL+ LR + L +N   G+IP EIG L RLE L L +N F G IP ++    +L Y  + N
Sbjct: 103 NLTNLRIVLLQNNNIKGKIPAEIGRLTRLETLDLSDNFFHGEIPFSVGYLQSLQYLRLNN 162

Query: 161 NKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDF 194
           N L G  P  + ++ +L  L L YN L+  +P F
Sbjct: 163 NSLSGVFPLSLSNMTQLAFLDLSYNNLSGPVPRF 196

Involved in defense response to geminivirus infection via regulation of the nuclear trafficking of RPL10A. Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  109 bits (272), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 102/175 (58%), Gaps = 10/175 (5%)

Query: 34  QTNETDRLALLTIKSQL-HDPSGVTSSWN--NTINLCLWTGVTC---GHRHQRVTELNLS 87
           Q+ E +  AL + K+ + +DP GV S W    ++  C WTG+TC   GH    V  ++L 
Sbjct: 25  QSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDSTGH----VVSVSLL 80

Query: 88  SQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNL 147
            +++ G+LSP + NL++L+ ++L  N F G+IP EIG L  L +L L  N FSG+IP+ +
Sbjct: 81  EKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGI 140

Query: 148 SRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
               N+ Y  + NN L G +P+EI     L  +   YN LT ++P+ +G+L  L+
Sbjct: 141 WELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQ 195

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q0WVM4|Y2239_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1

 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 91/154 (59%), Gaps = 2/154 (1%)

Query: 42  ALLTIKSQLHDPSGVTSSWNN-TINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVG 100
           AL+ IK++LHDP GV  +W+  +++ C WT ++C   +  V  L   SQ + G LS  +G
Sbjct: 37  ALINIKNELHDPHGVFKNWDEFSVDPCSWTMISCSSDNL-VIGLGAPSQSLSGTLSGSIG 95

Query: 101 NLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGN 160
           NL+ LR ++L +N   G+IP EI +L +L+ L L NN FSG IP ++++ SNL Y  + N
Sbjct: 96  NLTNLRQVSLQNNNISGKIPPEICSLPKLQTLDLSNNRFSGEIPGSVNQLSNLQYLRLNN 155

Query: 161 NKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDF 194
           N L G  P  +  +  L  L L YN L   +P F
Sbjct: 156 NSLSGPFPASLSQIPHLSFLDLSYNNLRGPVPKF 189

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VYT3|Y4052_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g30520 OS=Arabidopsis thaliana GN=At4g30520 PE=2 SV=1

 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 105/194 (54%), Gaps = 9/194 (4%)

Query: 3   NTSISISISCL-AILIWCFSLLLINSPGFSVGQTNETDRLALLTIKSQLHDPSGVTSSWN 61
             ++ I I  L + L  CFS L ++S      +    +  AL++I++ LHDP G  ++W+
Sbjct: 6   KKTMKIQIHLLYSFLFLCFSTLTLSS------EPRNPEVEALISIRNNLHDPHGALNNWD 59

Query: 62  N-TINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIP 120
             +++ C W  +TC      V  L   SQ + G LS  +GNL+ LR ++L +N   G+IP
Sbjct: 60  EFSVDPCSWAMITCS-PDNLVIGLGAPSQSLSGGLSESIGNLTNLRQVSLQNNNISGKIP 118

Query: 121 QEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTL 180
            E+G L +L+ L L NN FSG IP ++ + S+L Y  + NN L G  P  +  +  L  L
Sbjct: 119 PELGFLPKLQTLDLSNNRFSGDIPVSIDQLSSLQYLRLNNNSLSGPFPASLSQIPHLSFL 178

Query: 181 ALYYNYLTRQLPDF 194
            L YN L+  +P F
Sbjct: 179 DLSYNNLSGPVPKF 192

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8RY65|NIK2_ARATH Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1

 Score =  107 bits (267), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 88/153 (57%), Gaps = 3/153 (1%)

Query: 41  LALLTIKSQLHDPSGVTSSWNNT-INLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYV 99
           +AL+ IKS L DP GV  +W++T ++ C W  +TC      V  L   SQ + G LS  +
Sbjct: 44  VALIGIKSSLTDPHGVLMNWDDTAVDPCSWNMITCSDGF--VIRLEAPSQNLSGTLSSSI 101

Query: 100 GNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG 159
           GNL+ L+ + L +N   G IP EIG L++L+ L L  N+F+G IP  LS   NL Y  V 
Sbjct: 102 GNLTNLQTVLLQNNYITGNIPHEIGKLMKLKTLDLSTNNFTGQIPFTLSYSKNLQYLRVN 161

Query: 160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP 192
           NN L G IP  + ++ +L  L L YN L+  +P
Sbjct: 162 NNSLTGTIPSSLANMTQLTFLDLSYNNLSGPVP 194

Involved in defense response to geminivirus infection (By similarity). Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
147853780	1904	hypothetical protein VITISV_030954 [Viti	0.905	0.096	0.547	4e-50
359482058	1040	PREDICTED: probable LRR receptor-like se	0.970	0.188	0.527	7e-50
224081190	1011	predicted protein [Populus trichocarpa]	0.965	0.192	0.507	4e-48
224090977	1034	predicted protein [Populus trichocarpa]	0.955	0.186	0.510	8e-47
255585471	963	serine-threonine protein kinase, plant-t	0.910	0.191	0.536	1e-46
255571869	721	serine-threonine protein kinase, plant-t	0.826	0.231	0.553	3e-45
224097748	1032	predicted protein [Populus trichocarpa]	0.826	0.161	0.547	3e-45
224097750	1023	predicted protein [Populus trichocarpa]	0.806	0.159	0.520	4e-44
224113119	1065	predicted protein [Populus trichocarpa]	0.920	0.174	0.5	7e-44
255571732	923	serine-threonine protein kinase, plant-t	0.821	0.179	0.559	8e-44

>gi|147853780|emb|CAN83822.1| hypothetical protein VITISV_030954 [Vitis vinifera]

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 103/188 (54%), Positives = 137/188 (72%), Gaps = 5/188 (2%)

Query: 20  FSLLLINSPGFSVGQT----NETDRLALLTIKSQL-HDPSGVTSSWNNTINLCLWTGVTC 74
           ++++ ++SP  +   T    NETDRLALL IK+Q+  DP G+T+SWN++++ C WTGVTC
Sbjct: 48  YTIIFLHSPSPTTSSTILYGNETDRLALLAIKAQITQDPLGITTSWNDSVHFCNWTGVTC 107

Query: 75  GHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLAL 134
           GHRHQRV  LNLSS  + G LSP +GNL+FL  +NL  N FHG+IPQE+G L RL  L L
Sbjct: 108 GHRHQRVNTLNLSSLHLVGSLSPSIGNLTFLTGLNLELNNFHGQIPQELGRLSRLRALNL 167

Query: 135 PNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDF 194
            NNSFSG IP NLSRCSNL+YF +G N L G+IP  +GS  K+  + L+YN LT  +PD 
Sbjct: 168 TNNSFSGEIPANLSRCSNLVYFRLGFNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDS 227

Query: 195 IGNLSALE 202
           +GNL++++
Sbjct: 228 LGNLTSIK 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482058|ref|XP_002274540.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 104/197 (52%), Positives = 138/197 (70%), Gaps = 1/197 (0%)

Query: 7   SISISCLAILIWCFSLLLINSPGFSVGQTNETDRLALLTIKSQL-HDPSGVTSSWNNTIN 65
           ++++S    L    SL+ +  P       NETDRLALL IK+Q+  DP G+T+SWN++++
Sbjct: 8   AVNLSSSGFLRPKKSLVRVQHPVVLPSHRNETDRLALLAIKAQITQDPLGITTSWNDSVH 67

Query: 66  LCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGN 125
            C WTGVTCGHRHQRV  LNL+S  + G LSP +GNL+FL  +NL  N FHG+IPQE+G 
Sbjct: 68  FCNWTGVTCGHRHQRVNTLNLNSLHLVGSLSPSIGNLTFLTGLNLELNNFHGQIPQELGR 127

Query: 126 LLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYN 185
           L RL  L L NNSFSG IP NLSRCSNL+YF +G N L G+IP  +GS  K+  + L+YN
Sbjct: 128 LSRLRALNLTNNSFSGEIPANLSRCSNLVYFRLGFNNLIGRIPSWLGSYPKVVRMQLHYN 187

Query: 186 YLTRQLPDFIGNLSALE 202
            LT  +PD +GNL++++
Sbjct: 188 NLTGPVPDSLGNLTSIK 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081190|ref|XP_002306327.1| predicted protein [Populus trichocarpa] gi|222855776|gb|EEE93323.1| predicted protein [Populus trichocarpa]

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 100/197 (50%), Positives = 135/197 (68%), Gaps = 2/197 (1%)

Query: 8   ISISCLAILIWCFSLLLIN--SPGFSVGQTNETDRLALLTIKSQLHDPSGVTSSWNNTIN 65
           + +S ++  I+C  LLLI   S  FS+ + NETDRL+LL  K+Q+ DP    SSWN + +
Sbjct: 1   MELSGMSSCIFCPLLLLIIQLSFSFSLHEGNETDRLSLLAFKAQITDPLDALSSWNASTH 60

Query: 66  LCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGN 125
            C W+GV CGHRHQR+ ELNL S ++ G LSP++GNLSFLR +NL  N F  +IPQE+G 
Sbjct: 61  FCKWSGVICGHRHQRIVELNLQSSQLTGNLSPHIGNLSFLRVLNLEGNYFSRDIPQELGR 120

Query: 126 LLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYN 185
           L RL++L L NN+FSG IP N+S CSNL+  H+G+N L G+IP ++GSL KL    L  N
Sbjct: 121 LFRLQRLVLGNNTFSGEIPVNISSCSNLLVLHLGSNNLTGKIPAQLGSLSKLGAFVLQGN 180

Query: 186 YLTRQLPDFIGNLSALE 202
            L   +P   GNLS+++
Sbjct: 181 NLVGDIPSSFGNLSSVQ 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090977|ref|XP_002309132.1| predicted protein [Populus trichocarpa] gi|222855108|gb|EEE92655.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 101/198 (51%), Positives = 135/198 (68%), Gaps = 5/198 (2%)

Query: 6   ISISISCLAILIWCFSLLLINSPGFSVGQT----NETDRLALLTIKSQLH-DPSGVTSSW 60
           +S S+    IL  CF ++ +++P F+   T    NETD LALL IK+Q+  DP G+ SSW
Sbjct: 1   MSCSLFLKVILQSCFVVIFLHAPSFTQAATTLSGNETDHLALLAIKAQIKLDPLGLMSSW 60

Query: 61  NNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIP 120
           N++++ C W G+ CG+ HQRV  LNLS   + G LSP +GN+SFLR I+L  N FHGEIP
Sbjct: 61  NDSLHFCNWGGIICGNLHQRVITLNLSHYGLVGSLSPQIGNMSFLRGISLEQNYFHGEIP 120

Query: 121 QEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTL 180
           QEIG L RL+ +   NNSFSG IP NLS CS+L+   +G NKL GQIP ++GSL KL+ +
Sbjct: 121 QEIGRLDRLKYINFSNNSFSGEIPANLSGCSSLLMLRLGFNKLTGQIPYQLGSLQKLERV 180

Query: 181 ALYYNYLTRQLPDFIGNL 198
            L+YN L   +PD +GN+
Sbjct: 181 QLHYNNLNGSVPDSLGNI 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585471|ref|XP_002533428.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526716|gb|EEF28948.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/190 (53%), Positives = 129/190 (67%), Gaps = 6/190 (3%)

Query: 14  AILIWCFSLLLINSPGFSVGQTNETDRLALLTIKSQL-HDPSGVTSSWNNTINLCLWTGV 72
            +LI CFS     S   S    NETD  ALL  KS++ HDP  V  SWN TI+ C W GV
Sbjct: 20  GVLILCFS-----STTSSAISGNETDLQALLEFKSKITHDPFQVLRSWNETIHFCQWQGV 74

Query: 73  TCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKL 132
           TCG  H+RVT L+L S +I G +SPY+GNLSFLR +N+ +N F  EIPQ+IG L RLE+L
Sbjct: 75  TCGLLHRRVTVLDLHSLKISGSISPYIGNLSFLRALNIQNNSFGHEIPQQIGYLRRLEEL 134

Query: 133 ALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP 192
            L NNS  G IPTN+SRCSNL++  +G NKLEG +P+E+G L  LQ L+++ N LT  +P
Sbjct: 135 RLNNNSVGGKIPTNISRCSNLVFISLGKNKLEGNVPEELGVLSNLQVLSIFGNKLTGSIP 194

Query: 193 DFIGNLSALE 202
             +GNLS L+
Sbjct: 195 HSLGNLSQLQ 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571869|ref|XP_002526877.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533776|gb|EEF35508.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 93/168 (55%), Positives = 121/168 (72%), Gaps = 1/168 (0%)

Query: 36  NETDRLALLTIKSQL-HDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGI 94
           N+TDRLALL  K+++ HDP G+  SWN+++N C W GVTCGH+H+RV+ LNL    + G 
Sbjct: 16  NDTDRLALLEFKAKIVHDPHGIFDSWNDSVNFCEWRGVTCGHKHRRVSSLNLRGLSLLGS 75

Query: 95  LSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLI 154
           +SPY+ NL+FLR++N A+N FHGEIPQEIG+L RL  L L NNSF G IP N+S CS L 
Sbjct: 76  ISPYIRNLTFLRFLNFANNRFHGEIPQEIGHLFRLRHLNLRNNSFGGEIPGNISYCSKLR 135

Query: 155 YFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
             +   N L G+IP ++GSL KL TL L  N LT ++P  IGNLS+L+
Sbjct: 136 IINFEANSLVGEIPDQLGSLKKLVTLFLGVNNLTGRIPLSIGNLSSLK 183

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097748|ref|XP_002311065.1| predicted protein [Populus trichocarpa] gi|222850885|gb|EEE88432.1| predicted protein [Populus trichocarpa]

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/168 (54%), Positives = 122/168 (72%), Gaps = 1/168 (0%)

Query: 36  NETDRLALLTIKSQLH-DPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGI 94
           NETDRL+LL  K Q+  DP G  SSWN++ + C W+GVTCG RHQRV EL+L+S ++ G 
Sbjct: 31  NETDRLSLLAFKDQIEADPLGTLSSWNDSSHFCEWSGVTCGRRHQRVVELDLNSCKLVGS 90

Query: 95  LSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLI 154
           LSP++GNLSFLR +NL +N F   IPQEIG L RL+KL L NN+F+G IP N+SRCSNL+
Sbjct: 91  LSPHIGNLSFLRILNLNNNSFSHTIPQEIGRLFRLQKLLLRNNTFTGEIPVNISRCSNLL 150

Query: 155 YFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
           + ++G N+L G +P E+GSL K+Q      N L  ++P   GNLS++E
Sbjct: 151 HLYLGGNELTGGLPGELGSLSKMQWFVFEINNLVGEIPISFGNLSSVE 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097750|ref|XP_002311066.1| predicted protein [Populus trichocarpa] gi|222850886|gb|EEE88433.1| predicted protein [Populus trichocarpa]

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 87/167 (52%), Positives = 119/167 (71%)

Query: 36  NETDRLALLTIKSQLHDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGIL 95
           NETDRL+LL  K+Q+ DP G  SSWN +++ C W+GV CG +H+RV EL+L S ++ G L
Sbjct: 31  NETDRLSLLAFKTQISDPLGKLSSWNESLHFCEWSGVICGRKHRRVVELDLHSSQLAGSL 90

Query: 96  SPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIY 155
           SP++GNLSFLR +NL  N F   IPQE+G L R+++L+L NN+FSG IP N+SRC+NL+ 
Sbjct: 91  SPHIGNLSFLRILNLEKNSFSYLIPQELGRLFRIQELSLGNNTFSGEIPVNISRCTNLLS 150

Query: 156 FHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
             + +N L G++P E GSL KLQ L    N+L  ++P   GNLS L+
Sbjct: 151 IGLASNNLTGKLPAEFGSLSKLQVLNFQRNHLFGEIPPSYGNLSELQ 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113119|ref|XP_002316397.1| predicted protein [Populus trichocarpa] gi|222865437|gb|EEF02568.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 94/188 (50%), Positives = 124/188 (65%), Gaps = 2/188 (1%)

Query: 17  IWCFSLLLIN-SPGFSVGQTNETDRLALLTIKSQL-HDPSGVTSSWNNTINLCLWTGVTC 74
           +W    L+I  S  FS+ Q NETD  +LL +K Q+  DP G  SSWN + + C W+GVTC
Sbjct: 11  VWPLFFLIIQLSFSFSLAQGNETDIFSLLALKHQITDDPLGKLSSWNESTHFCEWSGVTC 70

Query: 75  GHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLAL 134
           G +HQRV +L+L S ++ G LSP+VGN+SFLR +NL +N F   IPQE+G+L RL+ L L
Sbjct: 71  GKKHQRVVQLDLQSCKLSGSLSPHVGNMSFLRTLNLENNSFGQNIPQELGSLFRLQALVL 130

Query: 135 PNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDF 194
            NNSFSG IP N+SRCSNL+   +  N L G++P E GSL KL+      N L  ++P  
Sbjct: 131 TNNSFSGEIPANISRCSNLLSLELEGNNLTGKLPAEFGSLSKLKAFYFPRNNLFGEIPPA 190

Query: 195 IGNLSALE 202
            GNLS +E
Sbjct: 191 YGNLSHIE 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571732|ref|XP_002526809.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533813|gb|EEF35544.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 94/168 (55%), Positives = 119/168 (70%), Gaps = 2/168 (1%)

Query: 36  NETDRLALLTIKSQL-HDPSGVTSSWNNTINLCLWTGVTCGHRH-QRVTELNLSSQRIGG 93
           NETDRLAL++ +  +  DP GV +SWNN+ + C W GVTC  RH  R+  LNL+SQ + G
Sbjct: 29  NETDRLALISFRELIVRDPFGVLNSWNNSAHFCDWYGVTCSRRHPDRIIALNLTSQGLVG 88

Query: 94  ILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNL 153
            LSP++GNLSFLRY++  +N F G+IP EIG L RL+ L L NNSF G IPTNLS CSNL
Sbjct: 89  SLSPHIGNLSFLRYVDFRNNSFRGQIPHEIGRLRRLQCLTLSNNSFCGNIPTNLSYCSNL 148

Query: 154 IYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
           +  ++ +NKL G IP E+GSL KL+ L L  N LT  +P  IGNLS+L
Sbjct: 149 VILNIIDNKLVGSIPAELGSLRKLEALGLAKNNLTGSIPPSIGNLSSL 196

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.831	0.163	0.514	7.7e-40
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.905	0.181	0.486	3e-38
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.920	0.184	0.460	5.9e-37
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.900	0.180	0.462	7.5e-37
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.831	0.162	0.464	3.8e-34
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.935	0.184	0.417	1.3e-30
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.935	0.232	0.420	2e-29
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.925	0.169	0.395	2.1e-26
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.811	0.145	0.410	4.6e-26
TAIR|locus:2170668	604	AT5G62710 [Arabidopsis thalian	0.920	0.307	0.356	5.3e-25

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 7.7e-40, P = 7.7e-40
 Identities = 87/169 (51%), Positives = 116/169 (68%)

Query:    35 TNETDRLALLTIKSQLHDPSGVT-SSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGG 93
             T ETD+ ALL  KSQ+ + S V   SWN+++ LC WTGV CG +H+RVT ++L   ++ G
Sbjct:    36 TEETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTG 95

Query:    94 ILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNL 153
             ++SP+VGNLSFLR +NLADN FHG IP E+GNL RL+ L + NN F G IP  LS CS+L
Sbjct:    96 VVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSL 155

Query:   154 IYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
                 + +N LE  +P E GSL KL  L+L  N LT + P  +GNL++L+
Sbjct:   156 STLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQ 204

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 3.0e-38, P = 3.0e-38
 Identities = 92/189 (48%), Positives = 122/189 (64%)

Query:    16 LIWCFSL-LLINSPGFSVGQTNETDRLALLTIKSQLHDPS-GVTSSWNNTINLCLWTGVT 73
             L+  FS  LL+ + GF    T+ETDR ALL  KSQ+ +    V SSWNN+  LC W  VT
Sbjct:     5 LLLSFSAHLLLGADGF----TDETDRQALLEFKSQVSEGKRDVLSSWNNSFPLCNWKWVT 60

Query:    74 CGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLA 133
             CG +H+RVT LNL   ++GGI+SP +GN+SFL  ++L+DN F G IP+E+GNL RLE L 
Sbjct:    61 CGRKHKRVTHLNLGGLQLGGIVSPSIGNVSFLISLDLSDNAFGGIIPREVGNLFRLEHLY 120

Query:   134 LPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPD 193
             +  NS  G IP  LS CS L+   + +N L   +P E+GSL KL  L L  N L  +LP 
Sbjct:   121 MAFNSLEGGIPATLSNCSRLLNLDLYSNPLRQGVPSELGSLTKLVILDLGRNNLKGKLPR 180

Query:   194 FIGNLSALE 202
              +GNL++L+
Sbjct:   181 SLGNLTSLK 189

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 5.9e-37, P = 5.9e-37
 Identities = 88/191 (46%), Positives = 121/191 (63%)

Query:    13 LAILIWCFSLLLINSPGFSVGQTNETDRLALLTIKSQL-HDPSGVTSSWNNTINLCLWTG 71
             L +L+   +L+L+ + GF    T+ETDR ALL  KSQ+  D   V SSWN++  LC W G
Sbjct:     3 LFLLLAFNALMLLETHGF----TDETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKG 58

Query:    72 VTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEK 131
             VTCG +++RVT L L   ++GG++SP +GNLSFL  ++L +N F G IPQE+G L RLE 
Sbjct:    59 VTCGRKNKRVTHLELGRLQLGGVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEY 118

Query:   132 LALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQL 191
             L +  N   G IP  L  CS L+   + +N+L G +P E+GSL  L  L LY N +  +L
Sbjct:   119 LDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKL 178

Query:   192 PDFIGNLSALE 202
             P  +GNL+ LE
Sbjct:   179 PTSLGNLTLLE 189

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 7.5e-37, P = 7.5e-37
 Identities = 87/188 (46%), Positives = 122/188 (64%)

Query:    16 LIWCFSLLL-INSPGFSVGQTNETDRLALLTIKSQLHDPS-GVTSSWNNTINLCLWTGVT 73
             L+  F+ L+ + + GF    T+E+DR ALL IKSQ+ +      S+WNN+  LC W  V 
Sbjct:     5 LLLAFNALMQLEAYGF----TDESDRQALLEIKSQVSESKRDALSAWNNSFPLCSWKWVR 60

Query:    74 CGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLA 133
             CG +H+RVT L+L   ++GG++SP +GNLSFL Y++L++N F G IPQE+GNL RL+ LA
Sbjct:    61 CGRKHKRVTRLDLGGLQLGGVISPSIGNLSFLIYLDLSNNSFGGTIPQEMGNLFRLKYLA 120

Query:   134 LPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPD 193
             +  N   G IP +LS CS L+Y  + +N L   +P E+GSL KL  L L  N L  + P 
Sbjct:   121 VGFNYLEGEIPASLSNCSRLLYLDLFSNNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPV 180

Query:   194 FIGNLSAL 201
             FI NL++L
Sbjct:   181 FIRNLTSL 188

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 3.8e-34, P = 3.8e-34
 Identities = 79/170 (46%), Positives = 107/170 (62%)

Query:    35 TNETDRLALLTIKSQLHDPSG--VTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIG 92
             +NETD  ALL  KSQ+ + +   V +SWN++   C W GVTCG R +RV  LNL   ++ 
Sbjct:    27 SNETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLT 86

Query:    93 GILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSN 152
             G++SP +GNLSFLR +NLADN F   IPQ++G L RL+ L +  N   G IP++LS CS 
Sbjct:    87 GVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSR 146

Query:   153 LIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
             L    + +N L   +P E+GSL KL  L L  N LT   P  +GNL++L+
Sbjct:   147 LSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQ 196

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 349 (127.9 bits), Expect = 1.3e-30, P = 1.3e-30
 Identities = 83/199 (41%), Positives = 117/199 (58%)

Query:    13 LAILIWCFSLLLINSPGFSVGQTNET-DRLALLTIKSQLHDPSGVT-SSWNNTIN--LCL 68
             L + +  FS LL+  P  S    +   D LALL+ KS L    G + +SWN + +   C 
Sbjct:     6 LLLFVLLFSALLL-CPSSSDDDGDAAGDELALLSFKSSLLYQGGQSLASWNTSGHGQHCT 64

Query:    69 WTGVTCGHRHQR----VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIG 124
             W GV CG R +R    V +L L S  + GI+SP +GNLSFLR ++L DN   GEIP E+ 
Sbjct:    65 WVGVVCGRRRRRHPHRVVKLLLRSSNLSGIISPSLGNLSFLRELDLGDNYLSGEIPPELS 124

Query:   125 NLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLK-LQTLALY 183
              L RL+ L L +NS  G+IP  +  C+ L    + +N+L G IP+EIG+ LK L  L LY
Sbjct:   125 RLSRLQLLELSDNSIQGSIPAAIGACTKLTSLDLSHNQLRGMIPREIGASLKHLSNLYLY 184

Query:   184 YNYLTRQLPDFIGNLSALE 202
              N L+ ++P  +GNL++L+
Sbjct:   185 KNGLSGEIPSALGNLTSLQ 203

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 336 (123.3 bits), Expect = 2.0e-29, P = 2.0e-29
 Identities = 82/195 (42%), Positives = 107/195 (54%)

Query:    13 LAILIWCFSLLLI--NSPGFSVGQTNETDRLALLTIKSQLHDPSGVT-SSWNNTIN--LC 67
             L + +  FS LL+  +S     G     D LALL+ KS L    G + +SWN + +   C
Sbjct:     6 LLLFVLFFSALLLFPSSSDDDGGGDAAGDELALLSFKSSLLYQGGQSLASWNTSGHGQHC 65

Query:    68 LWTGVTCGHRH-QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNL 126
              W GV CG RH  RV +L L S  + GI+SP +GNLSFLR + L+DN   G+IPQE+  L
Sbjct:    66 TWVGVVCGRRHPHRVVKLRLRSSNLAGIISPSLGNLSFLRTLQLSDNHLSGKIPQELSRL 125

Query:   127 LRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNY 186
              RL++L L  NS SG IP  L   ++L    + NN L G IP  +G L  L  LAL  N 
Sbjct:   126 SRLQQLVLNFNSLSGEIPAALGNLTSLSVLELTNNTLSGAIPSSLGKLTGLTDLALAENT 185

Query:   187 LTRQLPDFIGNLSAL 201
             L+  +P   G L  L
Sbjct:   186 LSGSIPSSFGQLRRL 200

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 2.1e-26, P = 2.1e-26
 Identities = 76/192 (39%), Positives = 105/192 (54%)

Query:    13 LAILIWCFSLLLINSPGFSVGQTNETDRLALLTIKSQLHDPSGVTSSWNNTINL-CLWTG 71
             + + ++  SLLLI     + G   E   L  L IKS+  D      +WN+  ++ C WTG
Sbjct:     6 MKLAVFFISLLLILLISETTGLNLEGQYL--LEIKSKFVDAKQNLRNWNSNDSVPCGWTG 63

Query:    72 VTCGHRHQ--RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRL 129
             V C +      V  LNLSS  + G LSP +G L  L+ ++L+ NG  G+IP+EIGN   L
Sbjct:    64 VMCSNYSSDPEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSL 123

Query:   130 EKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTR 189
             E L L NN F G IP  + +  +L    + NN++ G +P EIG+LL L  L  Y N ++ 
Sbjct:   124 EILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISG 183

Query:   190 QLPDFIGNLSAL 201
             QLP  IGNL  L
Sbjct:   184 QLPRSIGNLKRL 195

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 4.6e-26, P = 4.6e-26
 Identities = 71/173 (41%), Positives = 97/173 (56%)

Query:    38 TDRLALLTIKSQ-LHDPSGVTSSWNNTINL-CLWTGVTCGHRHQR-------VTELNLSS 88
             +D   LL +K++   D      +WN      C W GV C  +          VT L+LSS
Sbjct:    35 SDGQFLLELKNRGFQDSLNRLHNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTSLDLSS 94

Query:    89 QRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLS 148
               + GI+SP +G L  L Y+NLA N   G+IP+EIGN  +LE + L NN F G+IP  ++
Sbjct:    95 MNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEIN 154

Query:   149 RCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
             + S L  F++ NNKL G +P+EIG L  L+ L  Y N LT  LP  +GNL+ L
Sbjct:   155 KLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKL 207

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2170668 AT5G62710 [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 5.3e-25, P = 5.3e-25
 Identities = 67/188 (35%), Positives = 99/188 (52%)

Query:    13 LAILIWCFSLLLINSPGFSVGQTNETDRLALLTIKSQLHDPSGVTSSWNNTINL-CLWTG 71
             + I  W FS++ + +   S       D  ALL +KS  +D      +W ++    C WTG
Sbjct:     1 MGISNWVFSVISVATLFVSCSFALTLDGFALLELKSGFNDTRNSLENWKDSDESPCSWTG 60

Query:    72 VTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEK 131
             V+C  + QRV  +NL   ++GGI+SP +G LS L+ + L  N  HG IP EI N   L  
Sbjct:    61 VSCNPQDQRVVSINLPYMQLGGIISPSIGKLSRLQRLALHQNSLHGNIPNEITNCTELRA 120

Query:   132 LALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQL 191
             + L  N   G IP +L   + L    + +N L+G IP  I  L +L++L L  N+ + ++
Sbjct:   121 MYLRANFLQGGIPPDLGNLTFLTILDLSSNTLKGAIPSSISRLTRLRSLNLSTNFFSGEI 180

Query:   192 PDFIGNLS 199
             PD IG LS
Sbjct:   181 PD-IGVLS 187

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00050192 hypothetical protein (1011 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-28
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-09
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	5e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-07

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  109 bits (274), Expect = 7e-28
 Identities = 80/259 (30%), Positives = 113/259 (43%), Gaps = 77/259 (29%)

Query: 15  ILIWCFSLLLINSPGFSVGQTNETDRLALLTIKSQLHDPSGVTSSWNNTINLCLWTGVTC 74
            LI+    L +N   FS+    E +   LL+ KS ++DP    S+WN++ ++CLW G+TC
Sbjct: 11  YLIFMLFFLFLN---FSMLHAEELE--LLLSFKSSINDPLKYLSNWNSSADVCLWQGITC 65

Query: 75  GHRHQRVTELNLSSQRIGGILS------PYV-------GNLSF------------LRYIN 109
            +   RV  ++LS + I G +S      PY+         LS             LRY+N
Sbjct: 66  NN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN 124

Query: 110 LADNGF----------------------HGEIPQEIG----------------------- 124
           L++N F                       GEIP +IG                       
Sbjct: 125 LSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184

Query: 125 -NLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALY 183
            NL  LE L L +N   G IP  L +  +L + ++G N L G+IP EIG L  L  L L 
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244

Query: 184 YNYLTRQLPDFIGNLSALE 202
           YN LT  +P  +GNL  L+
Sbjct: 245 YNNLTGPIPSSLGNLKNLQ 263

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.0 bits (192), Expect = 6e-17
 Identities = 47/119 (39%), Positives = 66/119 (55%)

Query: 84  LNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTI 143
           L L+S ++ G +   +G +  L++I L  N   GEIP EIG L  L  L L  N+ +G I
Sbjct: 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252

Query: 144 PTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
           P++L    NL Y  +  NKL G IP  I SL KL +L L  N L+ ++P+ +  L  LE
Sbjct: 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 77.2 bits (190), Expect = 1e-16
 Identities = 40/118 (33%), Positives = 64/118 (54%)

Query: 84  LNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTI 143
           L+L    + G +   + NL+ L ++ LA N   G+IP+E+G +  L+ + L  N+ SG I
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 144 PTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
           P  +   ++L +  +  N L G IP  +G+L  LQ L LY N L+  +P  I +L  L
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.0 bits (174), Expect = 1e-14
 Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 13/143 (9%)

Query: 42  ALLTIKSQLHDPSGVTSSWNNTINLCL-----WTGVTCG----HRHQRVTELNLSSQRIG 92
           AL T+KS L  P      WN   + C+     W+G  C          +  L L +Q + 
Sbjct: 376 ALQTLKSSLGLPLRF--GWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLR 431

Query: 93  GILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSN 152
           G +   +  L  L+ INL+ N   G IP  +G++  LE L L  NSF+G+IP +L + ++
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 153 LIYFHVGNNKLEGQIPKEIGSLL 175
           L   ++  N L G++P  +G  L
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.0 bits (174), Expect = 2e-14
 Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 84  LNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTI 143
           L+L    + G +   +GNL  L+Y+ L  N   G IP  I +L +L  L L +NS SG I
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 144 PTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIG---NLSA 200
           P  + +  NL   H+ +N   G+IP  + SL +LQ L L+ N  + ++P  +G   NL+ 
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360

Query: 201 LE 202
           L+
Sbjct: 361 LD 362

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.4 bits (162), Expect = 6e-13
 Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 1/118 (0%)

Query: 84  LNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTI 143
           L+L+  +  G L    G+   L  ++L+ N F G +P+++G+L  L +L L  N  SG I
Sbjct: 457 LSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515

Query: 144 PTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
           P  LS C  L+   + +N+L GQIP     +  L  L L  N L+ ++P  +GN+ +L
Sbjct: 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL 573

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 63.7 bits (155), Expect = 5e-12
 Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 7/119 (5%)

Query: 85  NLSSQRIGGILSPY-VGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTI 143
           NLS    G I  PY +G L+ L +++L  N   G IP  +GNL  L+ L L  N  SG I
Sbjct: 223 NLS----GEI--PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276

Query: 144 PTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
           P ++     LI   + +N L G+IP+ +  L  L+ L L+ N  T ++P  + +L  L+
Sbjct: 277 PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 63.3 bits (154), Expect = 6e-12
 Identities = 43/124 (34%), Positives = 66/124 (53%)

Query: 79  QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNS 138
           Q++  L+LS   + G +   V  L  L  ++L  N F G+IP  + +L RL+ L L +N 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 139 FSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNL 198
           FSG IP NL + +NL    +  N L G+IP+ + S   L  L L+ N L  ++P  +G  
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403

Query: 199 SALE 202
            +L 
Sbjct: 404 RSLR 407

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 63.3 bits (154), Expect = 7e-12
 Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 84  LNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTI 143
           L L   ++ G + P + +L  L  ++L+DN   GEIP+ +  L  LE L L +N+F+G I
Sbjct: 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324

Query: 144 PTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFI---GNLSA 200
           P  L+    L    + +NK  G+IPK +G    L  L L  N LT ++P+ +   GNL  
Sbjct: 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK 384

Query: 201 L 201
           L
Sbjct: 385 L 385

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.0 bits (148), Expect = 4e-11
 Identities = 38/116 (32%), Positives = 63/116 (54%)

Query: 77  RHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPN 136
             +R+  L+LS  +  G +   +G+LS L  + L++N   GEIP E+ +  +L  L L +
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 137 NSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP 192
           N  SG IP + S    L    +  N+L G+IPK +G++  L  + + +N+L   LP
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 8e-10
 Identities = 30/93 (32%), Positives = 47/93 (50%)

Query: 104 FLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKL 163
           F+  + L + G  G IP +I  L  L+ + L  NS  G IP +L   ++L    +  N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 164 EGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIG 196
            G IP+ +G L  L+ L L  N L+ ++P  +G
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.2 bits (133), Expect = 4e-09
 Identities = 37/109 (33%), Positives = 56/109 (51%)

Query: 84  LNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTI 143
           L+L S    G +   + +L  L+ + L  N F GEIP+ +G    L  L L  N+ +G I
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372

Query: 144 PTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP 192
           P  L    NL    + +N LEG+IPK +G+   L+ + L  N  + +LP
Sbjct: 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421

Length = 968

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 49.6 bits (119), Expect = 5e-09
 Identities = 23/41 (56%), Positives = 26/41 (63%), Gaps = 2/41 (4%)

Query: 36 NETDRLALLTIKSQL-HDPSGVTSSWN-NTINLCLWTGVTC 74
             DR ALL  KS L  DPSG  SSWN ++ + C WTGVTC
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTC 41

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.9 bits (132), Expect = 6e-09
 Identities = 36/120 (30%), Positives = 61/120 (50%)

Query: 77  RHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPN 136
           +H  +T L+LS+  + G +   + +   L  + L  N   GEIP+ +G    L ++ L +
Sbjct: 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413

Query: 137 NSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIG 196
           NSFSG +P+  ++   + +  + NN L+G+I      +  LQ L+L  N     LPD  G
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 25/138 (18%)

Query: 80  RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNL------------- 126
            + +L L S  + G +   +G    LR + L DN F GE+P E   L             
Sbjct: 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL 440

Query: 127 -----------LRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLL 175
                        L+ L+L  N F G +P +      L    +  N+  G +P+++GSL 
Sbjct: 441 QGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLS 499

Query: 176 KLQTLALYYNYLTRQLPD 193
           +L  L L  N L+ ++PD
Sbjct: 500 ELMQLKLSENKLSGEIPD 517

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 23/71 (32%), Positives = 38/71 (53%)

Query: 132 LALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQL 191
           L L N    G IP ++S+  +L   ++  N + G IP  +GS+  L+ L L YN     +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 192 PDFIGNLSALE 202
           P+ +G L++L 
Sbjct: 483 PESLGQLTSLR 493

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.5 bits (118), Expect = 4e-07
 Identities = 34/123 (27%), Positives = 60/123 (48%)

Query: 80  RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSF 139
           R+  L L S +  G +   +G  + L  ++L+ N   GEIP+ + +   L KL L +NS 
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392

Query: 140 SGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS 199
            G IP +L  C +L    + +N   G++P E   L  +  L +  N L  ++     ++ 
Sbjct: 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452

Query: 200 ALE 202
           +L+
Sbjct: 453 SLQ 455

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
PLN03150	623	hypothetical protein; Provisional	99.83
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.55
PLN03150	623	hypothetical protein; Provisional	99.52
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.41
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.19
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.19
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.17
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.16
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.06
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.06
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.04
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.01
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.0
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.98
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.98
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.98
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.94
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.93
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.93
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.92
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.9
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.84
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.83
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.68
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.67
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.57
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.56
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.56
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.52
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.45
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.42
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.41
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.39
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.38
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.09
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.04
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.94
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.9
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.9
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.71
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.69
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.52
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.39
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.33
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.26
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.12
PRK15386	426	type III secretion protein GogB; Provisional	97.11
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.1
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.05
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.73
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.69
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.66
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.5
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.45
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.35
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.2
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.98
PRK15386	426	type III secretion protein GogB; Provisional	95.97
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.94
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.37
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.36
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.24
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.82
smart00370	26	LRR Leucine-rich repeats, outliers.	93.95
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.95
smart00370	26	LRR Leucine-rich repeats, outliers.	92.91
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.91
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.1
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	90.77
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.21
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	88.35
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	81.95

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=4.4e-25  Score=202.05  Aligned_cols=166  Identities=35%  Similarity=0.649  Sum_probs=125.6

Q ss_pred             CHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCccccceeCCCCCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcC
Q 035702           36 NETDRLALLTIKSQLHDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGF  115 (202)
Q Consensus        36 ~~~~~~~L~~~~~~~~~~~~~~~~W~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l  115 (202)
                      .++|+.+|++||+++.+|.+.+.+|+...++|.|+||+|+.. ++|+.|+++++++.+.++..+..+++|+.|++++|.+
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~  105 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL  105 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence            558999999999999878777889998889999999999854 6899999999999998888888999999999999998


Q ss_pred             cccCchhcc-CCCCCCeEeCCCCcCcc----------------------CcChhccCCCCCcEEEeecccCcccCChhcc
Q 035702          116 HGEIPQEIG-NLLRLEKLALPNNSFSG----------------------TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIG  172 (202)
Q Consensus       116 ~~~~p~~~~-~l~~L~~L~ls~n~l~~----------------------~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~  172 (202)
                      +|.+|..+. .+++|++|++++|.+++                      .+|..++++++|++|++++|.+.+.+|..+.
T Consensus       106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~  185 (968)
T PLN00113        106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT  185 (968)
T ss_pred             CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh
Confidence            888887654 56666666666665554                      4555555666666666666666666666666


Q ss_pred             CCCCCceeeccccccccccChhccCCCCCC
Q 035702          173 SLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       173 ~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++++|++|++++|.+++.+|..++++++|+
T Consensus       186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (968)
T PLN00113        186 NLTSLEFLTLASNQLVGQIPRELGQMKSLK  215 (968)
T ss_pred             hCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence            666666666666666666666666665553

>PLN03150 hypothetical protein; Provisional

Probab=99.83  E-value=6.9e-20  Score=160.39  Aligned_cols=156  Identities=31%  Similarity=0.535  Sum_probs=134.8

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC-----ccccceeCCCC----CcEEEEEcCCCCCccccCccccCCC
Q 035702           33 GQTNETDRLALLTIKSQLHDPSGVTSSWNNTINLC-----LWTGVTCGHRH----QRVTELNLSSQRIGGILSPYVGNLS  103 (202)
Q Consensus        33 ~~~~~~~~~~L~~~~~~~~~~~~~~~~W~~~~~~c-----~w~gv~c~~~~----~~v~~L~l~~~~l~~~~~~~l~~l~  103 (202)
                      ..+..+|..+|+.+|..+..+.  ..+|...  +|     .|.||.|....    ..++.|+|++|.+.|.+|+.+..++
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~--~~~W~g~--~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~  442 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPL--RFGWNGD--PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR  442 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCcc--cCCCCCC--CCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCC
Confidence            3467789999999999986543  2478653  44     79999995321    2589999999999999999999999


Q ss_pred             CCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCC-CCCceeec
Q 035702          104 FLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSL-LKLQTLAL  182 (202)
Q Consensus       104 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l-~~L~~L~l  182 (202)
                      +|+.|++++|.+.|.+|..++.+++|+.|++++|.++|.+|+.++++++|++|++++|+++|.+|..+... .++..+++
T Consensus       443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~  522 (623)
T PLN03150        443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF  522 (623)
T ss_pred             CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999988764 46788999


Q ss_pred             cccccccccC
Q 035702          183 YYNYLTRQLP  192 (202)
Q Consensus       183 ~~N~l~g~iP  192 (202)
                      .+|...+..|
T Consensus       523 ~~N~~lc~~p  532 (623)
T PLN03150        523 TDNAGLCGIP  532 (623)
T ss_pred             cCCccccCCC
Confidence            9987654454

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.69  E-value=5.7e-17  Score=148.85  Aligned_cols=124  Identities=37%  Similarity=0.629  Sum_probs=83.2

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            34556666666666666666666777777777777766666666666777777777777666666666666666777777


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|.+++.+|..+.++++|++|++++|.+++.+|..++++++|+
T Consensus       220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  263 (968)
T PLN00113        220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ  263 (968)
T ss_pred             cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence            66666666666666666666666666666666666666665553

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.55  E-value=1.5e-16  Score=115.46  Aligned_cols=120  Identities=26%  Similarity=0.419  Sum_probs=98.7

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.+.+++|+++- +|+.+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++.|++. .+|..|+.++.|+.||+
T Consensus        33 s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence            678999999999987 6778999999999999999999 88999999999999999999998 88999999999999999


Q ss_pred             ecccCcc-cCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEG-QIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g-~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      .+|++.. .+|..|..+..|+.|+++.|.|. .+|..++++++|+
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lq  153 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQ  153 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhccee
Confidence            9988752 45666666666666666666666 6666666666553

>PLN03150 hypothetical protein; Provisional

Probab=99.52  E-value=2.8e-14  Score=125.27  Aligned_cols=94  Identities=32%  Similarity=0.600  Sum_probs=90.5

Q ss_pred             CCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeecc
Q 035702          104 FLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALY  183 (202)
Q Consensus       104 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~  183 (202)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccChhccC
Q 035702          184 YNYLTRQLPDFIGN  197 (202)
Q Consensus       184 ~N~l~g~iP~~~~~  197 (202)
                      +|+++|.+|..++.
T Consensus       499 ~N~l~g~iP~~l~~  512 (623)
T PLN03150        499 GNSLSGRVPAALGG  512 (623)
T ss_pred             CCcccccCChHHhh
Confidence            99999999988765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.41  E-value=4.1e-15  Score=108.08  Aligned_cols=114  Identities=30%  Similarity=0.471  Sum_probs=73.1

Q ss_pred             EEEEcCCCCCccccCccccCCCCCcEEEccCCcCc-ccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeec
Q 035702           82 TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFH-GEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGN  160 (202)
Q Consensus        82 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~  160 (202)
                      +.+++.-|++.. +|..|+.++.|+.||+..|+++ ..+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+..
T Consensus        82 r~lnvgmnrl~~-lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrd  159 (264)
T KOG0617|consen   82 RILNVGMNRLNI-LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRD  159 (264)
T ss_pred             hheecchhhhhc-CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeecc
Confidence            333333333332 3444455555555555554443 233444444555555555555555 6777888888888888888


Q ss_pred             ccCcccCChhccCCCCCceeeccccccccccChhccCCC
Q 035702          161 NKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS  199 (202)
Q Consensus       161 n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~  199 (202)
                      |.+- ++|..++.+.+|+.|++.+|.++ .+|.+++++.
T Consensus       160 ndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~  196 (264)
T KOG0617|consen  160 NDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD  196 (264)
T ss_pred             Cchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence            8887 78888888888888888888888 7787777653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.19  E-value=2.4e-12  Score=108.74  Aligned_cols=119  Identities=28%  Similarity=0.319  Sum_probs=92.5

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcC---hhccCCCCCcE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIP---TNLSRCSNLIY  155 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~  155 (202)
                      .++++|+|+.|+++..-+.+|..+..|++|+|+.|.++-.-...|..+++|+.|||++|.+++.+-   ..+.+|++|+.
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk  396 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK  396 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence            456777777777776555667777777777777777764444566778899999999999887654   35678999999


Q ss_pred             EEeecccCcccCC-hhccCCCCCceeeccccccccccChhccCC
Q 035702          156 FHVGNNKLEGQIP-KEIGSLLKLQTLALYYNYLTRQLPDFIGNL  198 (202)
Q Consensus       156 L~l~~n~~~g~~p-~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l  198 (202)
                      |++.+|++. .+| ..|..++.|++|||.+|.+...-|..|..+
T Consensus       397 L~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  397 LRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM  439 (873)
T ss_pred             eeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc
Confidence            999999998 666 478899999999999999987777777665

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.19  E-value=6.5e-13  Score=113.17  Aligned_cols=115  Identities=26%  Similarity=0.399  Sum_probs=52.1

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG  159 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~  159 (202)
                      ++..++++.|++.. +|+++.++.+|+.|+|++|.++ .+.-..+...+|++|++|+|+++ .+|..+.++++|+.|.+.
T Consensus       223 NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n  299 (1255)
T KOG0444|consen  223 NLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYAN  299 (1255)
T ss_pred             hhhhccccccCCCc-chHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhc
Confidence            34445555555544 4555555555555555555554 33333333344444444444444 444444444444444444


Q ss_pred             cccCc-ccCChhccCCCCCceeeccccccccccChhccCC
Q 035702          160 NNKLE-GQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNL  198 (202)
Q Consensus       160 ~n~~~-g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l  198 (202)
                      +|+++ ..+|+.++++.+|+.+..++|++. .+|..++.|
T Consensus       300 ~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC  338 (1255)
T KOG0444|consen  300 NNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRC  338 (1255)
T ss_pred             cCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhh
Confidence            44432 123444444444444444444443 344444433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.18  E-value=8.6e-13  Score=107.04  Aligned_cols=112  Identities=29%  Similarity=0.456  Sum_probs=78.5

Q ss_pred             EEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhc-cCCCCCcEEEee
Q 035702           81 VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNL-SRCSNLIYFHVG  159 (202)
Q Consensus        81 v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l-~~l~~L~~L~l~  159 (202)
                      +++++.-.|-++. +|+.++.+.+|+.|+++.|.+. .+| .|+.+..|..++++.|.++ .+|... +.++++.+||+.
T Consensus       185 L~~ld~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLR  260 (565)
T KOG0472|consen  185 LKHLDCNSNLLET-LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLR  260 (565)
T ss_pred             HHhcccchhhhhc-CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecc
Confidence            3344443333332 5555666666666666666655 455 4555666666666666665 566555 478899999999


Q ss_pred             cccCcccCChhccCCCCCceeeccccccccccChhccCC
Q 035702          160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNL  198 (202)
Q Consensus       160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l  198 (202)
                      .|+++ ++|+.+.-+.+|+.||+++|.++ .+|-+++++
T Consensus       261 dNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl  297 (565)
T KOG0472|consen  261 DNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL  297 (565)
T ss_pred             ccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence            99999 88999999999999999999998 778888877

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.17  E-value=3e-11  Score=89.54  Aligned_cols=103  Identities=32%  Similarity=0.463  Sum_probs=41.2

Q ss_pred             cEEEEEcCCCCCccccCcccc-CCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhc-cCCCCCcEEE
Q 035702           80 RVTELNLSSQRIGGILSPYVG-NLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNL-SRCSNLIYFH  157 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l-~~l~~L~~L~  157 (202)
                      +.++|+|++|.++..  +.+. .+.+|+.|++++|.++ .++ .+..++.|++|++++|.++ .+.+.+ ..+++|++|+
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence            468899999998863  3455 5788999999999998 444 4778899999999999998 565545 4689999999


Q ss_pred             eecccCcccCC--hhccCCCCCceeeccccccc
Q 035702          158 VGNNKLEGQIP--KEIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       158 l~~n~~~g~~p--~~~~~l~~L~~L~l~~N~l~  188 (202)
                      +++|++.. +-  ..+..+++|+.|++.+|.++
T Consensus        95 L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISD-LNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---S-CCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCcCCC-hHHhHHHHcCCCcceeeccCCccc
Confidence            99999873 22  35678899999999999887

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.16  E-value=5.4e-12  Score=102.47  Aligned_cols=106  Identities=31%  Similarity=0.535  Sum_probs=84.1

Q ss_pred             cEEEEEcCCCCCcc-----------------------ccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCC
Q 035702           80 RVTELNLSSQRIGG-----------------------ILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPN  136 (202)
Q Consensus        80 ~v~~L~l~~~~l~~-----------------------~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~  136 (202)
                      -|+.+++++|++..                       .+|..+..+++|..|++++|.+. .+|..++.+..||.++++.
T Consensus       389 ~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~  467 (565)
T KOG0472|consen  389 IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSF  467 (565)
T ss_pred             ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccc
Confidence            47888888877643                       23445678889999999999988 8899899998999999998


Q ss_pred             CcCccCcCh------------------------hccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccc
Q 035702          137 NSFSGTIPT------------------------NLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       137 n~l~~~~p~------------------------~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~  188 (202)
                      |+|. .+|.                        .+.+|.+|.+||+.+|.+. .+|+.++++.+|++|++.+|+|.
T Consensus       468 NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  468 NRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            8776 3332                        3667778888888888887 77888888888888888888886

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.06  E-value=2.8e-09  Score=95.17  Aligned_cols=126  Identities=15%  Similarity=0.260  Sum_probs=74.1

Q ss_pred             CcccCCCCHHHHHHHHHHHHhCCCCCCCCC----CCCCCCCCCcccc----------------ceeCCC-----------
Q 035702           29 GFSVGQTNETDRLALLTIKSQLHDPSGVTS----SWNNTINLCLWTG----------------VTCGHR-----------   77 (202)
Q Consensus        29 ~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~----~W~~~~~~c~w~g----------------v~c~~~-----------   77 (202)
                      +.+...+...|...++++...+..|. +..    .|++.+++|.-..                |.|.+.           
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~l~~p~-~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~~~vt~l~~~g~~  132 (754)
T PRK15370         54 CHPPETASPEEIKSKFECLRMLAFPA-YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGGKSVTYTRVTESE  132 (754)
T ss_pred             hCCCCCCCHHHHHHHHHHHHHhcCCc-hhhccccccCCCCcccccCCcchhhheeeecCCceEEecCCCccccccccccc
Confidence            34556678889999999888876553 444    4988888885433                455310           


Q ss_pred             --------------------------------------------CCcEEEEEcCCCCCccccCccccCCCCCcEEEccCC
Q 035702           78 --------------------------------------------HQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADN  113 (202)
Q Consensus        78 --------------------------------------------~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n  113 (202)
                                                                  ..+.+.+++++++++. +|..+.  ++|+.|++++|
T Consensus       133 ~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N  209 (754)
T PRK15370        133 QASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTT-IPACIP--EQITTLILDNN  209 (754)
T ss_pred             ccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCc-CCcccc--cCCcEEEecCC
Confidence                                                        0234567777766665 454443  45777777777


Q ss_pred             cCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCc
Q 035702          114 GFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLE  164 (202)
Q Consensus       114 ~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~  164 (202)
                      .++ .+|..+.  ++|++|++++|.++ .+|..+.  ++|+.|++++|.++
T Consensus       210 ~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~  254 (754)
T PRK15370        210 ELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT  254 (754)
T ss_pred             CCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC
Confidence            776 5555433  45666666666665 4554332  23444444444444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.06  E-value=6.6e-12  Score=107.17  Aligned_cols=120  Identities=34%  Similarity=0.468  Sum_probs=106.3

Q ss_pred             CCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCcc-CcChhccCCCCCcEE
Q 035702           78 HQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG-TIPTNLSRCSNLIYF  156 (202)
Q Consensus        78 ~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~l~~l~~L~~L  156 (202)
                      -..++.|+|++|.++. +.-......+|+.|+++.|+++ .+|+.+..++.|+.|++.+|+++. -+|..++++..|+.+
T Consensus       244 l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf  321 (1255)
T KOG0444|consen  244 LRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF  321 (1255)
T ss_pred             hhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence            3678899999999987 5566788899999999999999 899999999999999999998763 479999999999999


Q ss_pred             EeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702          157 HVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       157 ~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      ...+|.+. -+|+.++++++|+.|.|+.|.+. ++|..+.-++.|
T Consensus       322 ~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l  364 (1255)
T KOG0444|consen  322 HAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDL  364 (1255)
T ss_pred             Hhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCc
Confidence            99999998 88999999999999999999987 889887766654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.04  E-value=2.4e-10  Score=96.91  Aligned_cols=120  Identities=28%  Similarity=0.370  Sum_probs=70.1

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchh------------------------ccCCCCCCeEeC
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQE------------------------IGNLLRLEKLAL  134 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~------------------------~~~l~~L~~L~l  134 (202)
                      ..++.|++++|.+...-+..|.++++|+++++..|.++ .+|..                        +..++.|+.|||
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence            34566777777776655555666666666666666665 55543                        344455555566


Q ss_pred             CCCcCccCcC-hhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccC-hhccCCCCC
Q 035702          135 PNNSFSGTIP-TNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP-DFIGNLSAL  201 (202)
Q Consensus       135 s~n~l~~~~p-~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP-~~~~~l~~L  201 (202)
                      +.|.++ .+| ..+..=.++++|+|++|.|+..-...|..+.+|..|.|+.|+++ .+| ..|.+++.|
T Consensus       157 SrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L  223 (873)
T KOG4194|consen  157 SRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKL  223 (873)
T ss_pred             hhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchh
Confidence            666555 344 23333356666666666666332334566667777777777777 444 444445554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.01  E-value=3.4e-10  Score=69.42  Aligned_cols=57  Identities=35%  Similarity=0.481  Sum_probs=23.5

Q ss_pred             CCeEeCCCCcCccCcC-hhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccc
Q 035702          129 LEKLALPNNSFSGTIP-TNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNY  186 (202)
Q Consensus       129 L~~L~ls~n~l~~~~p-~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~  186 (202)
                      |++|++++|+++ .+| ..+.++++|++|++++|.++...|..|..+++|++|++++|+
T Consensus         3 L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            444444444444 222 233444444444444444442222334444444444444443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.00  E-value=2.6e-10  Score=69.91  Aligned_cols=61  Identities=33%  Similarity=0.505  Sum_probs=54.7

Q ss_pred             CCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccC
Q 035702          103 SFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKL  163 (202)
Q Consensus       103 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~  163 (202)
                      ++|++|++++|.++...+..|..+++|++|++++|.++..-|..+.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999999955567889999999999999999966667899999999999999975

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.98  E-value=5.1e-11  Score=96.57  Aligned_cols=121  Identities=22%  Similarity=0.294  Sum_probs=102.6

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCC-CcCccCcC-hhccCCCCCcEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPN-NSFSGTIP-TNLSRCSNLIYF  156 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~-n~l~~~~p-~~l~~l~~L~~L  156 (202)
                      ...++|+|..|+|+...+..|..+.+|+.|||++|.|+..-|+.|.+++++..|-+.+ |+|+ .+| ..|++|.+++.|
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence            5678999999999997788899999999999999999988899999999988876655 9999 566 678999999999


Q ss_pred             EeecccCcccCChhccCCCCCceeeccccccccccCh-hccCCCCC
Q 035702          157 HVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPD-FIGNLSAL  201 (202)
Q Consensus       157 ~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~-~~~~l~~L  201 (202)
                      .+.-|++.-...+.+..+++|..|.+..|.+. .++. .|..+.++
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i  190 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAI  190 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhcc
Confidence            99999998444567889999999999999987 6665 55555443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.98  E-value=6.1e-10  Score=99.24  Aligned_cols=66  Identities=23%  Similarity=0.323  Sum_probs=45.0

Q ss_pred             CCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCC
Q 035702          128 RLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNL  198 (202)
Q Consensus       128 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l  198 (202)
                      +|+.|++++|.++ .+|..   ..+|+.|++++|+++ .+|..+.++++|+.+++++|+|+|..|..+.++
T Consensus       403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence            4555555555555 34432   235666777777777 678888888888888998888888877766443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.98  E-value=3.8e-11  Score=101.23  Aligned_cols=114  Identities=30%  Similarity=0.465  Sum_probs=61.5

Q ss_pred             EEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeec
Q 035702           81 VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGN  160 (202)
Q Consensus        81 v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~  160 (202)
                      ++.++++.|.+.- +|..+..++ |+.|-+++|+++ .+|+.++.+.+|..||.+.|.+. .+|..++++.+|+.|++..
T Consensus       123 lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrR  198 (722)
T KOG0532|consen  123 LTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRR  198 (722)
T ss_pred             HHHhhhccchhhc-CChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhh
Confidence            4445555555544 444444333 555555555555 55555555555555565555555 5555555555555555555


Q ss_pred             ccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702          161 NKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       161 n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      |++. .+|+.+..+ .|..||++.|+++ .||..|.+|+.|
T Consensus       199 n~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~L  236 (722)
T KOG0532|consen  199 NHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHL  236 (722)
T ss_pred             hhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhh
Confidence            5555 445555433 2555555555555 555555555544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.94  E-value=1.3e-10  Score=91.52  Aligned_cols=81  Identities=25%  Similarity=0.304  Sum_probs=50.4

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      ..++++||++|.++. +.++..-++.++.|+++.|.+. .+. .+..+++|+.|||++|.++ .+-.+-.++-++++|.|
T Consensus       284 q~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchhh-hhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            556777777777765 5666667777777777777776 332 2666777777777777766 33333334444444444


Q ss_pred             ecccC
Q 035702          159 GNNKL  163 (202)
Q Consensus       159 ~~n~~  163 (202)
                      ++|.+
T Consensus       360 a~N~i  364 (490)
T KOG1259|consen  360 AQNKI  364 (490)
T ss_pred             hhhhH
Confidence            44443

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.93  E-value=1.7e-09  Score=61.48  Aligned_cols=39  Identities=56%  Similarity=1.049  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHhCC-CCCCCCCCCCCC--CCCCccccceeC
Q 035702           37 ETDRLALLTIKSQLH-DPSGVTSSWNNT--INLCLWTGVTCG   75 (202)
Q Consensus        37 ~~~~~~L~~~~~~~~-~~~~~~~~W~~~--~~~c~w~gv~c~   75 (202)
                      ++|+++|++||.++. ++.+.+.+|+..  .++|.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            579999999999998 567889999987  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.93  E-value=1.5e-10  Score=102.27  Aligned_cols=105  Identities=25%  Similarity=0.313  Sum_probs=80.0

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|+|++|++.......+.+++.|++|++++|.++ .+|+.+..++.|++|...+|.+. .+| .+..++.|+.+|+
T Consensus       383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDl  459 (1081)
T KOG0618|consen  383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDL  459 (1081)
T ss_pred             cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEec
Confidence            57888888888887744456778888888888888888 77888888888888888888887 777 6778888888888


Q ss_pred             ecccCcccCChhccCCCCCceeeccccc
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNY  186 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~  186 (202)
                      +.|+++...-+.....++|++||++||.
T Consensus       460 S~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  460 SCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             ccchhhhhhhhhhCCCcccceeeccCCc
Confidence            8888863322222233788888888885

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.92  E-value=6.9e-11  Score=104.32  Aligned_cols=106  Identities=26%  Similarity=0.441  Sum_probs=97.5

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCch-hccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQ-EIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH  157 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~  157 (202)
                      ..++.|++.+|.++...-+.+..+.+|+.|++++|.+. .+|+ .+.++..|+.|+||+|+++ .+|..+.++..|++|.
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~  436 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR  436 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence            45788899999999988888999999999999999998 6665 5778999999999999999 9999999999999999


Q ss_pred             eecccCcccCChhccCCCCCceeeccccccc
Q 035702          158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~  188 (202)
                      ..+|++. .+| .+..+++|+.+|++.|+++
T Consensus       437 ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  437 AHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             hcCCcee-ech-hhhhcCcceEEecccchhh
Confidence            9999999 788 7899999999999999987

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.90  E-value=5.6e-10  Score=90.16  Aligned_cols=109  Identities=27%  Similarity=0.400  Sum_probs=59.7

Q ss_pred             EEEEEcCCCCCcc----ccCccccCC-CCCcEEEccCCcCccc----CchhccCCCCCCeEeCCCCcCccC----cChhc
Q 035702           81 VTELNLSSQRIGG----ILSPYVGNL-SFLRYINLADNGFHGE----IPQEIGNLLRLEKLALPNNSFSGT----IPTNL  147 (202)
Q Consensus        81 v~~L~l~~~~l~~----~~~~~l~~l-~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~l  147 (202)
                      +++|++++|.+.+    .+...+..+ ++|+.|++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+
T Consensus       110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l  189 (319)
T cd00116         110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL  189 (319)
T ss_pred             ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence            5666666665552    122233444 5666666666666532    222344455666666666666532    23334


Q ss_pred             cCCCCCcEEEeecccCccc----CChhccCCCCCceeecccccccc
Q 035702          148 SRCSNLIYFHVGNNKLEGQ----IPKEIGSLLKLQTLALYYNYLTR  189 (202)
Q Consensus       148 ~~l~~L~~L~l~~n~~~g~----~p~~~~~l~~L~~L~l~~N~l~g  189 (202)
                      ..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++
T Consensus       190 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         190 KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence            4455677777777766532    22334556667777777776664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.89  E-value=2e-09  Score=79.77  Aligned_cols=100  Identities=25%  Similarity=0.296  Sum_probs=51.1

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhc-cCCCCCCeEeCCCCcCccC-cChhccCCCCCcEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSFSGT-IPTNLSRCSNLIYF  156 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~L  156 (202)
                      .+++.|++++|.++..  +.+..++.|+.|++++|.++ .+.+.+ ..+++|+.|++++|++... .-..+..+++|+.|
T Consensus        42 ~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L  118 (175)
T PF14580_consen   42 DKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL  118 (175)
T ss_dssp             TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred             cCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence            5789999999999873  34888999999999999999 555444 4689999999999999842 12567789999999


Q ss_pred             EeecccCcccCCh----hccCCCCCceeec
Q 035702          157 HVGNNKLEGQIPK----EIGSLLKLQTLAL  182 (202)
Q Consensus       157 ~l~~n~~~g~~p~----~~~~l~~L~~L~l  182 (202)
                      ++.+|.++.. +.    .+..+|+|+.||-
T Consensus       119 ~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  119 SLEGNPVCEK-KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             E-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred             eccCCcccch-hhHHHHHHHHcChhheeCC
Confidence            9999999843 33    3567899999984

>PLN03210 Resistant to P

Probab=98.87  E-value=8.7e-09  Score=96.65  Aligned_cols=117  Identities=26%  Similarity=0.242  Sum_probs=89.8

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      ..++.|++++|...+.+|..+..+++|+.|++++|..-+.+|..+ .+++|+.|++++|..-..+|..   ..+|+.|++
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L  853 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL  853 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence            467888888887777788889999999999999876555777765 6888888888887554455543   357888888


Q ss_pred             ecccCcccCChhccCCCCCceeeccc-cccccccChhccCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYY-NYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~-N~l~g~iP~~~~~l~~L  201 (202)
                      ++|.++ .+|..+..+++|+.|++++ |++. .+|..+..+++|
T Consensus       854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L  895 (1153)
T PLN03210        854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHL  895 (1153)
T ss_pred             CCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCC
Confidence            888888 6888888888999998887 4555 577666665554

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.86  E-value=9.6e-09  Score=96.38  Aligned_cols=104  Identities=23%  Similarity=0.242  Sum_probs=52.2

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG  159 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~  159 (202)
                      .++.|++.++.+.. ++..+..+++|+.++++++...+.+|. ++.+++|+.|++++|.....+|..+.++++|+.|+++
T Consensus       612 ~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        612 NLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             CCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            34455555555443 344445555555555555443334443 4555555555555554334555555555556666655


Q ss_pred             cccCcccCChhccCCCCCceeeccccc
Q 035702          160 NNKLEGQIPKEIGSLLKLQTLALYYNY  186 (202)
Q Consensus       160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~  186 (202)
                      +|...+.+|..+ ++++|+.|++++|.
T Consensus       690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        690 RCENLEILPTGI-NLKSLYRLNLSGCS  715 (1153)
T ss_pred             CCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence            544333444433 44445555544443

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.86  E-value=7.3e-09  Score=92.56  Aligned_cols=102  Identities=22%  Similarity=0.395  Sum_probs=71.3

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      ..++.|++++|.++. +|..+.  .+|++|++++|.++ .+|..+.  .+|+.|++++|.+. .+|..+.  ++|+.|++
T Consensus       199 ~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            468889999998886 565443  57888888888887 5666543  46777888888777 6676553  46777777


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccCh
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPD  193 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~  193 (202)
                      ++|+++ .+|..+.  ++|+.|++++|+++ .+|.
T Consensus       270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~  300 (754)
T PRK15370        270 FHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPA  300 (754)
T ss_pred             cCCccC-ccccccC--CCCcEEECCCCccc-cCcc
Confidence            777777 5665443  36777777777776 4443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.84  E-value=7.1e-09  Score=92.53  Aligned_cols=25  Identities=40%  Similarity=0.551  Sum_probs=16.2

Q ss_pred             CCceeeccccccccccChhccCCCCC
Q 035702          176 KLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       176 ~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      +|+.|++++|+++ .+|..++++++|
T Consensus       423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L  447 (788)
T PRK15387        423 GLLSLSVYRNQLT-RLPESLIHLSSE  447 (788)
T ss_pred             hhhhhhhccCccc-ccChHHhhccCC
Confidence            4556666666666 667777666655

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.83  E-value=1.4e-09  Score=87.88  Aligned_cols=110  Identities=25%  Similarity=0.360  Sum_probs=62.0

Q ss_pred             CcEEEEEcCCCCCccc----cCccccCCCCCcEEEccCCcCccc----CchhccCCCCCCeEeCCCCcCccC----cChh
Q 035702           79 QRVTELNLSSQRIGGI----LSPYVGNLSFLRYINLADNGFHGE----IPQEIGNLLRLEKLALPNNSFSGT----IPTN  146 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~  146 (202)
                      .+++.+++++|.+++.    +...+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++.    ++..
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            4567777777777632    223455556677777777776632    223344455677777777766532    2334


Q ss_pred             ccCCCCCcEEEeecccCcccCChhcc-----CCCCCceeeccccccc
Q 035702          147 LSRCSNLIYFHVGNNKLEGQIPKEIG-----SLLKLQTLALYYNYLT  188 (202)
Q Consensus       147 l~~l~~L~~L~l~~n~~~g~~p~~~~-----~l~~L~~L~l~~N~l~  188 (202)
                      +..+++|++|++++|.+++.....+.     ..+.|+.|++++|.++
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            45566677777777666532111111     1256666666666664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.68  E-value=3.2e-09  Score=89.81  Aligned_cols=112  Identities=25%  Similarity=0.404  Sum_probs=101.3

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG  159 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~  159 (202)
                      .++.+-+++|+++. +|+.++.+..|..||.+.|.+. .+|..++++.+|+.|.+.+|.+. .+|+.+.. -.|..||++
T Consensus       144 pLkvli~sNNkl~~-lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfS  219 (722)
T KOG0532|consen  144 PLKVLIVSNNKLTS-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFS  219 (722)
T ss_pred             cceeEEEecCcccc-CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-Cceeeeecc
Confidence            47888899999887 7888999999999999999998 89999999999999999999999 88988884 478999999


Q ss_pred             cccCcccCChhccCCCCCceeeccccccccccChhccC
Q 035702          160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGN  197 (202)
Q Consensus       160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~  197 (202)
                      .|+++ .+|-.|.+|..|++|-|.+|.+. ..|..++.
T Consensus       220 cNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~  255 (722)
T KOG0532|consen  220 CNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICE  255 (722)
T ss_pred             cCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHh
Confidence            99999 89999999999999999999998 77777664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.67  E-value=1.3e-08  Score=85.04  Aligned_cols=115  Identities=33%  Similarity=0.510  Sum_probs=68.5

Q ss_pred             cEEEEEcCCCCCccccCccccCCC-CCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLS-FLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .++.+++.++.++. +++....+. +|+.|++++|.+. .+|..+..+++|+.|+++.|.++ .+|...+.++.|+.|++
T Consensus       117 ~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         117 NLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             ceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            45666666666665 444445453 6677777777666 55555666667777777777666 55655556666666666


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS  199 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~  199 (202)
                      ++|+++ .+|........|+++.+++|... .++..+.+++
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~  232 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLK  232 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcc
Confidence            666666 55555444445666666666432 3344344433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.57  E-value=2.1e-08  Score=83.68  Aligned_cols=115  Identities=30%  Similarity=0.524  Sum_probs=81.7

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG  159 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~  159 (202)
                      +++.+++++|.+.. ++..+..++.|+.|++++|.++ .+|...+..+.|+.|++++|.++ .+|........|+++.++
T Consensus       141 nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         141 NLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS  217 (394)
T ss_pred             hcccccccccchhh-hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence            78999999999887 5556889999999999999998 77776667888999999999988 777765555567777777


Q ss_pred             cccCcc----------------------cCChhccCCCCCceeeccccccccccChhccCCC
Q 035702          160 NNKLEG----------------------QIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS  199 (202)
Q Consensus       160 ~n~~~g----------------------~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~  199 (202)
                      +|.+..                      .++..+..++++++|++++|.++ .++. ++.+.
T Consensus       218 ~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~  277 (394)
T COG4886         218 NNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-SISS-LGSLT  277 (394)
T ss_pred             CCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccc-cccc-ccccC
Confidence            774220                      12344455555666666666665 4443 44333

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.56  E-value=2e-08  Score=81.72  Aligned_cols=92  Identities=22%  Similarity=0.227  Sum_probs=79.3

Q ss_pred             ccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCC
Q 035702           97 PYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLK  176 (202)
Q Consensus        97 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~  176 (202)
                      ..|.++++|++|++++|.+++.-+..|..+.+++.|+|.+|++...-..-|.++..|++|+|.+|+|+-.-|-.|..+..
T Consensus       268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~  347 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS  347 (498)
T ss_pred             HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence            35888999999999999999888888999999999999999998555566788999999999999998666778888889


Q ss_pred             Cceeeccccccc
Q 035702          177 LQTLALYYNYLT  188 (202)
Q Consensus       177 L~~L~l~~N~l~  188 (202)
                      |.+|++-.|.+.
T Consensus       348 l~~l~l~~Np~~  359 (498)
T KOG4237|consen  348 LSTLNLLSNPFN  359 (498)
T ss_pred             eeeeehccCccc
Confidence            999999888764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.56  E-value=3.9e-08  Score=89.29  Aligned_cols=107  Identities=25%  Similarity=0.400  Sum_probs=81.2

Q ss_pred             CcEEEEEcCCCC--CccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEE
Q 035702           79 QRVTELNLSSQR--IGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYF  156 (202)
Q Consensus        79 ~~v~~L~l~~~~--l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L  156 (202)
                      ..+++|-+.+|.  +.....+.|..++.|+.||+++|.--+.+|..++.+-+|++|+++++.++ .+|..++++.+|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            346677666665  33333345777888888888887766688888888888888888888888 888888888888888


Q ss_pred             EeecccCcccCChhccCCCCCceeeccccc
Q 035702          157 HVGNNKLEGQIPKEIGSLLKLQTLALYYNY  186 (202)
Q Consensus       157 ~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~  186 (202)
                      |+..+.....+|.....+.+|++|.+....
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccc
Confidence            888887665566666678888888876543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.52  E-value=8.7e-09  Score=72.58  Aligned_cols=111  Identities=17%  Similarity=0.184  Sum_probs=76.7

Q ss_pred             CcEEEEEcCCCCCccccCccc-cCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702           79 QRVTELNLSSQRIGGILSPYV-GNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH  157 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~  157 (202)
                      .+++.+++++|.+.. +|+.| ..++.++.+++++|.++ .+|..+..++.|+.++++.|.+. ..|.-+..+.++..|+
T Consensus        53 ~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   53 YELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             ceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            567778888888776 45444 34557888888888887 77777888888888888888887 7777777788888888


Q ss_pred             eecccCcccCChhccCCCCCceeeccccccccccCh
Q 035702          158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPD  193 (202)
Q Consensus       158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~  193 (202)
                      ..+|.+. .+|-.+..-...-..++.++.+.+.-|.
T Consensus       130 s~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  130 SPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             CCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence            8877776 5665533333333444556666655443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.45  E-value=3.6e-08  Score=78.01  Aligned_cols=65  Identities=22%  Similarity=0.289  Sum_probs=55.7

Q ss_pred             ccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCc
Q 035702           97 PYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLE  164 (202)
Q Consensus        97 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~  164 (202)
                      ..+..+..|+++|+++|.++ .+.++..-+|.++.|+++.|.+. .+- .+..+++|+.|||++|.++
T Consensus       278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             EecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH
Confidence            34566778999999999999 77888888999999999999998 443 4889999999999999876

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.42  E-value=2.4e-07  Score=52.76  Aligned_cols=36  Identities=36%  Similarity=0.583  Sum_probs=19.0

Q ss_pred             CCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCc
Q 035702          128 RLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLE  164 (202)
Q Consensus       128 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~  164 (202)
                      +|++|++++|.++ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 45555555555555555555554

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.41  E-value=3.1e-07  Score=52.26  Aligned_cols=36  Identities=33%  Similarity=0.531  Sum_probs=18.8

Q ss_pred             CCcEEEeecccCcccCChhccCCCCCceeeccccccc
Q 035702          152 NLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       152 ~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~  188 (202)
                      +|++|++++|+++ .+|..+.++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 44444555555555555555554

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.39  E-value=2.6e-07  Score=84.07  Aligned_cols=121  Identities=21%  Similarity=0.298  Sum_probs=94.5

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCc--CcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNG--FHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYF  156 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~--l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L  156 (202)
                      ..++.+.+.+|.+.. ++... ..+.|+.|-+..|.  +.......|..++.|++||+++|.--+.+|..++++-+|++|
T Consensus       523 ~~~rr~s~~~~~~~~-~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEH-IAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchhh-ccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            456777777776654 22222 23468899999986  442333457789999999999987767999999999999999


Q ss_pred             EeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          157 HVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       157 ~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++++..++ .+|..+.++.+|.+|++..+.....+|.....+.+||
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence            99999999 8999999999999999998876556676666677764

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.38  E-value=3.5e-08  Score=69.59  Aligned_cols=110  Identities=26%  Similarity=0.323  Sum_probs=88.6

Q ss_pred             cEEEEEcCCCCCccccC---ccccCCCCCcEEEccCCcCcccCchhcc-CCCCCCeEeCCCCcCccCcChhccCCCCCcE
Q 035702           80 RVTELNLSSQRIGGILS---PYVGNLSFLRYINLADNGFHGEIPQEIG-NLLRLEKLALPNNSFSGTIPTNLSRCSNLIY  155 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~---~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~  155 (202)
                      ....++|+++.+-- ++   ..+....+|+..++++|.+. .+|+.|. .++..+.+++++|+++ .+|..+..++.|+.
T Consensus        28 E~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             HhhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            34556777766542 22   33556677888999999999 6666655 4568999999999999 89999999999999


Q ss_pred             EEeecccCcccCChhccCCCCCceeeccccccccccChh
Q 035702          156 FHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDF  194 (202)
Q Consensus       156 L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~  194 (202)
                      ++++.|.+. ..|+.+..+.++..|+..+|... .||-.
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d  141 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD  141 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence            999999999 77888888999999999999876 66644

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.09  E-value=6.9e-06  Score=61.58  Aligned_cols=101  Identities=23%  Similarity=0.282  Sum_probs=78.8

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcC--hhccCCCCCcEEE
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIP--TNLSRCSNLIYFH  157 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p--~~l~~l~~L~~L~  157 (202)
                      +...+++++|.+...  +.|..++.|.+|.+.+|.++...|.--.-+++|+.|.+.+|.+. .+-  +.+..+++|++|.
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence            456789999988752  45888999999999999999555554344678999999999887 433  4567889999999


Q ss_pred             eecccCcccCCh----hccCCCCCceeeccc
Q 035702          158 VGNNKLEGQIPK----EIGSLLKLQTLALYY  184 (202)
Q Consensus       158 l~~n~~~g~~p~----~~~~l~~L~~L~l~~  184 (202)
                      +-+|.++. .+.    .+..+|+|+.||+..
T Consensus       120 ll~Npv~~-k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEH-KKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhc-ccCceeEEEEecCcceEeehhh
Confidence            99999873 222    366889999999754

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.04  E-value=1.5e-07  Score=82.10  Aligned_cols=101  Identities=27%  Similarity=0.400  Sum_probs=61.0

Q ss_pred             EEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChh-ccCCCCCcEEEee
Q 035702           81 VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTN-LSRCSNLIYFHVG  159 (202)
Q Consensus        81 v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~-l~~l~~L~~L~l~  159 (202)
                      +...+.+.|.+.- +..++.-++.++.|+|+.|++....  .+..+++|++|||++|.+. .+|.- ..++ .|+.|.++
T Consensus       166 L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence            3444555555554 4555666677777777777776332  5666777777777777776 55531 2233 36667777


Q ss_pred             cccCcccCChhccCCCCCceeeccccccc
Q 035702          160 NNKLEGQIPKEIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~  188 (202)
                      +|.++ .+ ..+.++.+|+.||++.|-+.
T Consensus       241 nN~l~-tL-~gie~LksL~~LDlsyNll~  267 (1096)
T KOG1859|consen  241 NNALT-TL-RGIENLKSLYGLDLSYNLLS  267 (1096)
T ss_pred             ccHHH-hh-hhHHhhhhhhccchhHhhhh
Confidence            77665 32 34566666777777766554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.02  E-value=1.3e-06  Score=73.70  Aligned_cols=102  Identities=24%  Similarity=0.329  Sum_probs=42.0

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG  159 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~  159 (202)
                      .++.+++.+|.+.+. ...+..+++|++|++++|.++...+  +..++.|+.|++++|.++ .+. .+..++.|+.++++
T Consensus        96 ~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   96 SLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLDLS  170 (414)
T ss_pred             ceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhheeccCcch-hcc-CCccchhhhcccCC
Confidence            344444444444442 1113344444444555444442211  233444444444444444 222 22334444444444


Q ss_pred             cccCcccCChh-ccCCCCCceeecccccc
Q 035702          160 NNKLEGQIPKE-IGSLLKLQTLALYYNYL  187 (202)
Q Consensus       160 ~n~~~g~~p~~-~~~l~~L~~L~l~~N~l  187 (202)
                      +|.++ .+... ...+.+++.+++.+|.+
T Consensus       171 ~n~i~-~ie~~~~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  171 YNRIV-DIENDELSELISLEELDLGGNSI  198 (414)
T ss_pred             cchhh-hhhhhhhhhccchHHHhccCCch
Confidence            44444 22111 23444444444444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=1.1e-06  Score=72.48  Aligned_cols=83  Identities=22%  Similarity=0.172  Sum_probs=42.0

Q ss_pred             CcEEEEEcCCCCCccccC--ccccCCCCCcEEEccCCcCcccCchh-ccCCCCCCeEeCCCCcCccCcC-hhccCCCCCc
Q 035702           79 QRVTELNLSSQRIGGILS--PYVGNLSFLRYINLADNGFHGEIPQE-IGNLLRLEKLALPNNSFSGTIP-TNLSRCSNLI  154 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~--~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~  154 (202)
                      .+|+.|+|++|-+..-.+  .-...+++|+.|+++.|.+.-..... -..+++|+.|.++.|.++...- .....+|+|+
T Consensus       146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~  225 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE  225 (505)
T ss_pred             CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence            457777777766553222  22456677777777777664222111 1134555666666665553221 1123344444


Q ss_pred             EEEeecc
Q 035702          155 YFHVGNN  161 (202)
Q Consensus       155 ~L~l~~n  161 (202)
                      .|++..|
T Consensus       226 ~L~L~~N  232 (505)
T KOG3207|consen  226 VLYLEAN  232 (505)
T ss_pred             Hhhhhcc
Confidence            4444444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=3.2e-06  Score=69.91  Aligned_cols=109  Identities=17%  Similarity=0.147  Sum_probs=55.5

Q ss_pred             CcEEEEEcCCCCCccc-cCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcC--hhccCCCCCcE
Q 035702           79 QRVTELNLSSQRIGGI-LSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIP--TNLSRCSNLIY  155 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p--~~l~~l~~L~~  155 (202)
                      .+++.|.+++++++-. +...+..+++|+.|++..|...+.......-+..|+.|||++|.+- ..+  ...+.++.|+.
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhh
Confidence            4555555555555421 1122344555666666655321121122233455666666666655 333  34456666666


Q ss_pred             EEeecccCccc-CChh-----ccCCCCCceeeccccccc
Q 035702          156 FHVGNNKLEGQ-IPKE-----IGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       156 L~l~~n~~~g~-~p~~-----~~~l~~L~~L~l~~N~l~  188 (202)
                      |+++.+.+... +|+.     --.+++|++|++..|++.
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            66666666421 1221     234566777777777664

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.90  E-value=4.4e-06  Score=70.42  Aligned_cols=105  Identities=27%  Similarity=0.363  Sum_probs=82.4

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      ..+..+.++.|.+.. .-..+..+++|+.+++.+|.+. .+...+..+++|++|++++|.++. +. .+..++.|+.|++
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~-i~-~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK-LE-GLSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccc-cc-chhhccchhhhee
Confidence            345566677777665 3344788899999999999998 444336789999999999999984 33 3567888999999


Q ss_pred             ecccCcccCChhccCCCCCceeecccccccc
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTR  189 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g  189 (202)
                      .+|.++ .+ ..+..+++|+.+++++|.++.
T Consensus       148 ~~N~i~-~~-~~~~~l~~L~~l~l~~n~i~~  176 (414)
T KOG0531|consen  148 SGNLIS-DI-SGLESLKSLKLLDLSYNRIVD  176 (414)
T ss_pred             ccCcch-hc-cCCccchhhhcccCCcchhhh
Confidence            999998 44 456668999999999999883

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.71  E-value=7.2e-05  Score=56.24  Aligned_cols=102  Identities=28%  Similarity=0.363  Sum_probs=74.7

Q ss_pred             EEEEcCCCCCccccCcccc-CCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeec
Q 035702           82 TELNLSSQRIGGILSPYVG-NLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGN  160 (202)
Q Consensus        82 ~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~  160 (202)
                      +++++.+..+...  ..++ -......+||++|.+- .+ +.|..++.|.+|.+++|+++..-|.--..+++|..|.+.+
T Consensus        22 ~e~~LR~lkip~i--enlg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   22 RELDLRGLKIPVI--ENLGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             cccccccccccch--hhccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            4556666554421  1111 2345678999999986 32 3578899999999999999965555445678899999999


Q ss_pred             ccCcccCC--hhccCCCCCceeeccccccc
Q 035702          161 NKLEGQIP--KEIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       161 n~~~g~~p--~~~~~l~~L~~L~l~~N~l~  188 (202)
                      |.+. .+-  +.+..+|+|++|.+-+|.++
T Consensus        98 Nsi~-~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   98 NSIQ-ELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             cchh-hhhhcchhccCCccceeeecCCchh
Confidence            9986 322  35778999999999999876

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.69  E-value=9.7e-07  Score=77.21  Aligned_cols=104  Identities=25%  Similarity=0.295  Sum_probs=82.7

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchh-ccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQE-IGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH  157 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~  157 (202)
                      ..++.|+|+.|+++..  ..+..+++|++||++.|.+. .+|.. ...+ .|+.|.+++|.++ .+ ..+.++.+|+.||
T Consensus       187 ~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~-tL-~gie~LksL~~LD  260 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALT-TL-RGIENLKSLYGLD  260 (1096)
T ss_pred             HHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHH-hh-hhHHhhhhhhccc
Confidence            5789999999999874  36889999999999999998 55542 1223 4999999999998 43 3578999999999


Q ss_pred             eecccCcccC-ChhccCCCCCceeeccccccc
Q 035702          158 VGNNKLEGQI-PKEIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       158 l~~n~~~g~~-p~~~~~l~~L~~L~l~~N~l~  188 (202)
                      +++|-+.+.- -..++.+..|+.|.|.||.+-
T Consensus       261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            9999987532 134667788999999999875

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.52  E-value=7.2e-05  Score=58.11  Aligned_cols=100  Identities=19%  Similarity=0.179  Sum_probs=56.1

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCC--cCcccCchhccCCCCCCeEeCCCCcCcc-CcChhccCCCCCcEE
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADN--GFHGEIPQEIGNLLRLEKLALPNNSFSG-TIPTNLSRCSNLIYF  156 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~l~~l~~L~~L  156 (202)
                      .++.+++.+.+++..  ..+..+++|++|.++.|  .+.+.++.-...+++|+++++++|++.. .--..+..+.+|..|
T Consensus        44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence            344444444444431  33566777777777777  4444444444445777777777777762 001224455667777


Q ss_pred             EeecccCcccCC----hhccCCCCCceeec
Q 035702          157 HVGNNKLEGQIP----KEIGSLLKLQTLAL  182 (202)
Q Consensus       157 ~l~~n~~~g~~p----~~~~~l~~L~~L~l  182 (202)
                      ++.+|..++ .-    ..+.-+++|++||-
T Consensus       122 dl~n~~~~~-l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  122 DLFNCSVTN-LDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hcccCCccc-cccHHHHHHHHhhhhccccc
Confidence            777776653 21    12444566666653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.39  E-value=3.5e-05  Score=62.20  Aligned_cols=109  Identities=20%  Similarity=0.270  Sum_probs=77.0

Q ss_pred             CcEEEEEcCCCCCcc----ccCccccCCCCCcEEEccCCcCccc----CchhccCCCCCCeEeCCCCcCccCcCh----h
Q 035702           79 QRVTELNLSSQRIGG----ILSPYVGNLSFLRYINLADNGFHGE----IPQEIGNLLRLEKLALPNNSFSGTIPT----N  146 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~~p~----~  146 (202)
                      +.++.+.++.|++..    .+...+..+++|+.||+.+|.++-.    +...+..+++|+.++++++.++..--.    .
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a  264 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA  264 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence            456777777777652    1234577889999999999988632    334567788899999999888743222    2


Q ss_pred             c-cCCCCCcEEEeecccCccc----CChhccCCCCCceeecccccc
Q 035702          147 L-SRCSNLIYFHVGNNKLEGQ----IPKEIGSLLKLQTLALYYNYL  187 (202)
Q Consensus       147 l-~~l~~L~~L~l~~n~~~g~----~p~~~~~l~~L~~L~l~~N~l  187 (202)
                      + ...++|+++.+.+|.++..    +-..+...+.|..|+|++|.+
T Consensus       265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            2 3468899999999988632    222345678899999999988

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.33  E-value=0.00012  Score=65.36  Aligned_cols=113  Identities=15%  Similarity=0.189  Sum_probs=73.8

Q ss_pred             CcEEEEEcCCCCCcc-ccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCcc-CcChhccCCCCCcEE
Q 035702           79 QRVTELNLSSQRIGG-ILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG-TIPTNLSRCSNLIYF  156 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~l~~l~~L~~L  156 (202)
                      +.+++|.+.+..+.. .+..-..++++|..||+++.+++ .+ ..++++++|+.|.+.+=.+.. ..-..+.+|++|++|
T Consensus       148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL  225 (699)
T KOG3665|consen  148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL  225 (699)
T ss_pred             cccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence            567777777755532 23334567788888888888887 33 567788888888777655552 111345688899999


Q ss_pred             EeecccCcccC--Ch----hccCCCCCceeeccccccccccCh
Q 035702          157 HVGNNKLEGQI--PK----EIGSLLKLQTLALYYNYLTRQLPD  193 (202)
Q Consensus       157 ~l~~n~~~g~~--p~----~~~~l~~L~~L~l~~N~l~g~iP~  193 (202)
                      |++.......-  ..    --..+|+|+.||.+++.+.+.+-+
T Consensus       226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le  268 (699)
T KOG3665|consen  226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE  268 (699)
T ss_pred             eccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence            99887665221  11    112478899999988877755443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.26  E-value=0.00015  Score=56.43  Aligned_cols=90  Identities=22%  Similarity=0.375  Sum_probs=66.5

Q ss_pred             cCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCC--cCccCcChhccCCCCCcEEEeecccCcccCChh--
Q 035702           95 LSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNN--SFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKE--  170 (202)
Q Consensus        95 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n--~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~--  170 (202)
                      +......+..|+.+.+.+..++ .+ ..+..+++|+.|.++.|  ++++.++-....+++|+++++++|++..  ++.  
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~  110 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR  110 (260)
T ss_pred             cccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence            4444455667777777777766 32 24567899999999999  7777777666777999999999999972  333  


Q ss_pred             -ccCCCCCceeeccccccc
Q 035702          171 -IGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       171 -~~~l~~L~~L~l~~N~l~  188 (202)
                       +..+.+|..|++++|..+
T Consensus       111 pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  111 PLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhhhhcchhhhhcccCCcc
Confidence             456677888999888665

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.12  E-value=0.00021  Score=34.09  Aligned_cols=22  Identities=41%  Similarity=0.498  Sum_probs=15.0

Q ss_pred             CCceeeccccccccccChhccCC
Q 035702          176 KLQTLALYYNYLTRQLPDFIGNL  198 (202)
Q Consensus       176 ~L~~L~l~~N~l~g~iP~~~~~l  198 (202)
                      +|++||+++|+++ .+|.+|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4677777777777 777766543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.11  E-value=0.0018  Score=54.26  Aligned_cols=31  Identities=16%  Similarity=0.210  Sum_probs=13.3

Q ss_pred             CCcEEEeecccCcccCChhccCCCCCceeecccc
Q 035702          152 NLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYN  185 (202)
Q Consensus       152 ~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N  185 (202)
                      +|++|++.+|... .+|..+.  .+|+.|+++.|
T Consensus       157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            4455555554433 2232221  24555555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.10  E-value=0.00025  Score=57.34  Aligned_cols=110  Identities=15%  Similarity=0.195  Sum_probs=66.7

Q ss_pred             CcEEEEEcCCCCCccccCc----cccCCCCCcEEEccCCcCcccC-------------chhccCCCCCCeEeCCCCcCcc
Q 035702           79 QRVTELNLSSQRIGGILSP----YVGNLSFLRYINLADNGFHGEI-------------PQEIGNLLRLEKLALPNNSFSG  141 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~~-------------p~~~~~l~~L~~L~ls~n~l~~  141 (202)
                      ++++.++|+.|.+.-..++    -+.+...|++|.+.+|.+.-.-             ....+.-+.|+++...+|++..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            4788999999887644333    3556778888888888875211             1123445678888888887763


Q ss_pred             C----cChhccCCCCCcEEEeecccCcc--c--CChhccCCCCCceeeccccccc
Q 035702          142 T----IPTNLSRCSNLIYFHVGNNKLEG--Q--IPKEIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       142 ~----~p~~l~~l~~L~~L~l~~n~~~g--~--~p~~~~~l~~L~~L~l~~N~l~  188 (202)
                      .    +-..+...+.|+.+.+..|.+.-  .  +-..+..++.|+.||+..|-|+
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            1    11234445666666666666531  1  1233556666666666666655

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=3.1e-05  Score=61.00  Aligned_cols=98  Identities=20%  Similarity=0.286  Sum_probs=63.7

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcC--hhccCCCCCcEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIP--TNLSRCSNLIYF  156 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p--~~l~~l~~L~~L  156 (202)
                      ..|+.|+.-|+++.++  .-..+++.|+.|.|+-|.++..-|  +..++.|+.|+|..|.|. .+-  .-+.++++|+.|
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhH
Confidence            3456666666666652  123467778888888888773322  567778888888888777 333  234677888888


Q ss_pred             EeecccCcccCCh-----hccCCCCCceee
Q 035702          157 HVGNNKLEGQIPK-----EIGSLLKLQTLA  181 (202)
Q Consensus       157 ~l~~n~~~g~~p~-----~~~~l~~L~~L~  181 (202)
                      .|..|.=.|.-+.     .+.-+|+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888876655443     244567777765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.73  E-value=0.0079  Score=41.72  Aligned_cols=117  Identities=19%  Similarity=0.292  Sum_probs=61.3

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.+.+.. .+...-...|..++.|+.+.+.++ +...-...+...++++.+.+.+ .+...-...+..+++|+.+++
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~   88 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI   88 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred             CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence            4678888874 566655566888889999999886 5534445677887899999976 444233355677899999999


Q ss_pred             ecccCcccCC-hhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQIP-KEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p-~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ..+ ++ .++ ..+.+. +++.+.+.. .+...-...|.++++|+
T Consensus        89 ~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   89 PSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             TTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             Ccc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            765 44 333 346666 889888876 44423446777777764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.69  E-value=0.00052  Score=54.76  Aligned_cols=83  Identities=24%  Similarity=0.330  Sum_probs=49.5

Q ss_pred             CcEEEEEcCCCCCcc--ccCccccCCCCCcEEEccCCcCcccCchhc-cCCCCCCeEeCCCCcCccCcC-hhccCCCCCc
Q 035702           79 QRVTELNLSSQRIGG--ILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSFSGTIP-TNLSRCSNLI  154 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~  154 (202)
                      .+|++++|.+|.++.  .+-.-+.++++|++|+++.|.+...+- .+ ..+.+|++|-|.+..+...-. ..+..+|.++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            456777777777663  122235567777777777777763322 22 245677777777766654333 3345666666


Q ss_pred             EEEeeccc
Q 035702          155 YFHVGNNK  162 (202)
Q Consensus       155 ~L~l~~n~  162 (202)
                      .++++.|.
T Consensus       150 elHmS~N~  157 (418)
T KOG2982|consen  150 ELHMSDNS  157 (418)
T ss_pred             hhhhccch
Confidence            77666663

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.66  E-value=0.0048  Score=48.83  Aligned_cols=106  Identities=20%  Similarity=0.231  Sum_probs=71.1

Q ss_pred             CcEEEEEcCCCCCccccCcc----ccCCCCCcEEEccCCcCcccCchh-------------ccCCCCCCeEeCCCCcCcc
Q 035702           79 QRVTELNLSSQRIGGILSPY----VGNLSFLRYINLADNGFHGEIPQE-------------IGNLLRLEKLALPNNSFSG  141 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~----l~~l~~L~~L~l~~n~l~~~~p~~-------------~~~l~~L~~L~ls~n~l~~  141 (202)
                      ++++.++|+.|.+....|+.    +.+-+.|++|.+++|.+.-..-..             ..+-|.|+++...+|++. 
T Consensus        92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-  170 (388)
T COG5238          92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-  170 (388)
T ss_pred             CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence            67888999999887766643    566678999999999875211111             233577888888888877 


Q ss_pred             CcChh-----ccCCCCCcEEEeecccCcccCCh--------hccCCCCCceeeccccccc
Q 035702          142 TIPTN-----LSRCSNLIYFHVGNNKLEGQIPK--------EIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       142 ~~p~~-----l~~l~~L~~L~l~~n~~~g~~p~--------~~~~l~~L~~L~l~~N~l~  188 (202)
                      ..|..     +..-..|+.+.+..|.|.   |.        .+..+.+|+.||+..|-|+
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchh
Confidence            33322     222246777777777775   32        2345667888888888776

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.50  E-value=0.0016  Score=58.45  Aligned_cols=108  Identities=20%  Similarity=0.261  Sum_probs=77.3

Q ss_pred             CcEEEEEcCCCCCcc-ccCccc-cCCCCCcEEEccCCcCcc-cCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcE
Q 035702           79 QRVTELNLSSQRIGG-ILSPYV-GNLSFLRYINLADNGFHG-EIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIY  155 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~-~~~~~l-~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~  155 (202)
                      .+++.|+++|...-. .-+..+ ..+|+|+.|.+.+-.+.. ....-..++++|..||+|+.+++ .+ ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence            467788888754321 112222 357899999999877652 23344567899999999999998 44 67899999999


Q ss_pred             EEeecccCcc-cCChhccCCCCCceeeccccccc
Q 035702          156 FHVGNNKLEG-QIPKEIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       156 L~l~~n~~~g-~~p~~~~~l~~L~~L~l~~N~l~  188 (202)
                      |.+.+=.+.. ..-..+.++++|+.||+|.....
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence            9988776652 11236789999999999986544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.45  E-value=0.0013  Score=31.26  Aligned_cols=12  Identities=42%  Similarity=0.617  Sum_probs=4.9

Q ss_pred             CCeEeCCCCcCc
Q 035702          129 LEKLALPNNSFS  140 (202)
Q Consensus       129 L~~L~ls~n~l~  140 (202)
                      |++||+++|.++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            334444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.35  E-value=0.00085  Score=53.60  Aligned_cols=59  Identities=22%  Similarity=0.313  Sum_probs=25.5

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccC-chhccCCCCCCeEeCCCC
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEI-PQEIGNLLRLEKLALPNN  137 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~ls~n  137 (202)
                      ++++.|+++.|.+...+..--....+|+.|-+.+..+.... ...+..+|.++.+.++.|
T Consensus        97 P~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen   97 PALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             ccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            45555555555554322211123444555555554443222 222334444445544444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.20  E-value=8.8e-05  Score=57.12  Aligned_cols=85  Identities=21%  Similarity=0.206  Sum_probs=72.6

Q ss_pred             CCCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEE
Q 035702           77 RHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYF  156 (202)
Q Consensus        77 ~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L  156 (202)
                      +..+++.||++.|++.. +...+..++.++.|+++.|.+. ..|..++++..++.+++..|.++ ..|.+++..+.++++
T Consensus        40 ~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            34789999999988765 4455777888999999999988 88888999999999999999988 889999999999999


Q ss_pred             EeecccCc
Q 035702          157 HVGNNKLE  164 (202)
Q Consensus       157 ~l~~n~~~  164 (202)
                      ++-.|.+.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            99988876

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.98  E-value=0.00077  Score=53.85  Aligned_cols=39  Identities=28%  Similarity=0.415  Sum_probs=20.8

Q ss_pred             cCCCCCcEEEeeccc-CcccCChhccCCCCCceeeccccc
Q 035702          148 SRCSNLIYFHVGNNK-LEGQIPKEIGSLLKLQTLALYYNY  186 (202)
Q Consensus       148 ~~l~~L~~L~l~~n~-~~g~~p~~~~~l~~L~~L~l~~N~  186 (202)
                      ..+++|.+|||+.|. ++...-..+.+++.|++|.++.++
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence            345666666666654 232222345566666666665553

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.97  E-value=0.015  Score=48.92  Aligned_cols=87  Identities=18%  Similarity=0.261  Sum_probs=57.0

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCC-cCccCcChhccCCCCCcEEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNN-SFSGTIPTNLSRCSNLIYFH  157 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n-~l~~~~p~~l~~l~~L~~L~  157 (202)
                      .+.+.|+++++.++. +| .+  ..+|+.|.++++.--..+|..+  .++|+.|++++| .+. .+|.      +|+.|+
T Consensus        52 ~~l~~L~Is~c~L~s-LP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~  118 (426)
T PRK15386         52 RASGRLYIKDCDIES-LP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLE  118 (426)
T ss_pred             cCCCEEEeCCCCCcc-cC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceEE
Confidence            457789999998776 45 22  2469999998853323667655  368999999998 555 5665      466777


Q ss_pred             eecccCc--ccCChhccCCCCCceeeccc
Q 035702          158 VGNNKLE--GQIPKEIGSLLKLQTLALYY  184 (202)
Q Consensus       158 l~~n~~~--g~~p~~~~~l~~L~~L~l~~  184 (202)
                      +..+...  +.+|.      +|+.|.+.+
T Consensus       119 L~~n~~~~L~~LPs------sLk~L~I~~  141 (426)
T PRK15386        119 IKGSATDSIKNVPN------GLTSLSINS  141 (426)
T ss_pred             eCCCCCcccccCcc------hHhheeccc
Confidence            7766543  23443      466666643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.94  E-value=0.013  Score=46.55  Aligned_cols=110  Identities=29%  Similarity=0.417  Sum_probs=61.0

Q ss_pred             CcEEEEEcCCCCCccc----cCccccCCCCCcEEEccCCcCcc---cCc-------hhccCCCCCCeEeCCCCcCccCcC
Q 035702           79 QRVTELNLSSQRIGGI----LSPYVGNLSFLRYINLADNGFHG---EIP-------QEIGNLLRLEKLALPNNSFSGTIP  144 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~l~~---~~p-------~~~~~l~~L~~L~ls~n~l~~~~p  144 (202)
                      ..++.++|+||.+...    +...+.+-.+|+..+++.-....   .++       +.+-.+++|+.++||+|.|....|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            4567778887776532    23345555666666666543321   122       223456777777777777766555


Q ss_pred             hhc----cCCCCCcEEEeecccCc----ccCC---------hhccCCCCCceeeccccccc
Q 035702          145 TNL----SRCSNLIYFHVGNNKLE----GQIP---------KEIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       145 ~~l----~~l~~L~~L~l~~n~~~----g~~p---------~~~~~l~~L~~L~l~~N~l~  188 (202)
                      +.+    +.-+.|.+|.+++|.+.    |.+-         ....+-|.|+......|++.
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            443    44466777777777653    1111         11234556666666666654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.37  E-value=0.078  Score=36.60  Aligned_cols=86  Identities=19%  Similarity=0.210  Sum_probs=52.6

Q ss_pred             ccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCC
Q 035702           97 PYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLK  176 (202)
Q Consensus        97 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~  176 (202)
                      ..|...++|+.+.+.. .+...-...|..+++|+.+.+..+ +...-...+.++++++.+.+.+ .+...-...+..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            3467778999999985 566444567888889999999886 6623335677888999999965 443122345667899


Q ss_pred             Cceeecccc
Q 035702          177 LQTLALYYN  185 (202)
Q Consensus       177 L~~L~l~~N  185 (202)
                      |+.+++..+
T Consensus        83 l~~i~~~~~   91 (129)
T PF13306_consen   83 LKNIDIPSN   91 (129)
T ss_dssp             ECEEEETTT
T ss_pred             ccccccCcc
Confidence            999999765

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.36  E-value=0.0096  Score=26.36  Aligned_cols=13  Identities=54%  Similarity=0.557  Sum_probs=5.8

Q ss_pred             CCceeeccccccc
Q 035702          176 KLQTLALYYNYLT  188 (202)
Q Consensus       176 ~L~~L~l~~N~l~  188 (202)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4556666666554

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.24  E-value=0.00017  Score=55.59  Aligned_cols=89  Identities=15%  Similarity=0.164  Sum_probs=76.9

Q ss_pred             ccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCC
Q 035702           97 PYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLK  176 (202)
Q Consensus        97 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~  176 (202)
                      ..+..+...+.||++.|.+- ..-..++-++.+..++++.|.+. .+|..++.+..++.+++..|..+ ..|..+...+.
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence            34667788899999999876 44456677888999999999998 88999999999999999999998 78999999999


Q ss_pred             Cceeeccccccc
Q 035702          177 LQTLALYYNYLT  188 (202)
Q Consensus       177 L~~L~l~~N~l~  188 (202)
                      ++++++-+|.|.
T Consensus       113 ~k~~e~k~~~~~  124 (326)
T KOG0473|consen  113 PKKNEQKKTEFF  124 (326)
T ss_pred             cchhhhccCcch
Confidence            999999999876

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.82  E-value=0.0013  Score=52.09  Aligned_cols=87  Identities=25%  Similarity=0.300  Sum_probs=67.7

Q ss_pred             CCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCCh--hccCCCCCce
Q 035702          102 LSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPK--EIGSLLKLQT  179 (202)
Q Consensus       102 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~--~~~~l~~L~~  179 (202)
                      +.+.+.|+.=++.++ .+. ....++.|++|.|+-|+++ .+ ..+..+++|+.|.|..|.|. .+-+  .+.++|+|+.
T Consensus        18 l~~vkKLNcwg~~L~-DIs-ic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DIS-ICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCcc-HHH-HHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence            445667777788777 322 2457999999999999998 33 34779999999999999987 4432  4678999999


Q ss_pred             eeccccccccccCh
Q 035702          180 LALYYNYLTRQLPD  193 (202)
Q Consensus       180 L~l~~N~l~g~iP~  193 (202)
                      |-|..|.-.|.-+.
T Consensus        93 LWL~ENPCc~~ag~  106 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQ  106 (388)
T ss_pred             HhhccCCcccccch
Confidence            99999988776654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.95  E-value=0.05  Score=26.68  Aligned_cols=18  Identities=39%  Similarity=0.501  Sum_probs=10.5

Q ss_pred             CCCceeeccccccccccCh
Q 035702          175 LKLQTLALYYNYLTRQLPD  193 (202)
Q Consensus       175 ~~L~~L~l~~N~l~g~iP~  193 (202)
                      ++|+.|++++|.++ .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            45566666666665 4554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.95  E-value=0.05  Score=26.68  Aligned_cols=18  Identities=39%  Similarity=0.501  Sum_probs=10.5

Q ss_pred             CCCceeeccccccccccCh
Q 035702          175 LKLQTLALYYNYLTRQLPD  193 (202)
Q Consensus       175 ~~L~~L~l~~N~l~g~iP~  193 (202)
                      ++|+.|++++|.++ .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            45566666666665 4554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.91  E-value=0.11  Score=25.44  Aligned_cols=13  Identities=46%  Similarity=0.667  Sum_probs=6.1

Q ss_pred             CCCeEeCCCCcCc
Q 035702          128 RLEKLALPNNSFS  140 (202)
Q Consensus       128 ~L~~L~ls~n~l~  140 (202)
                      +|++|++++|.++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.91  E-value=0.11  Score=25.44  Aligned_cols=13  Identities=46%  Similarity=0.667  Sum_probs=6.1

Q ss_pred             CCCeEeCCCCcCc
Q 035702          128 RLEKLALPNNSFS  140 (202)
Q Consensus       128 ~L~~L~ls~n~l~  140 (202)
                      +|++|++++|.++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.10  E-value=0.03  Score=26.94  Aligned_cols=18  Identities=33%  Similarity=0.294  Sum_probs=8.8

Q ss_pred             CCCceeeccccccccccC
Q 035702          175 LKLQTLALYYNYLTRQLP  192 (202)
Q Consensus       175 ~~L~~L~l~~N~l~g~iP  192 (202)
                      ++|++|++++|++++...
T Consensus         2 ~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCEEEccCCcCCHHHH
Confidence            455666666666654433

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=90.77  E-value=0.01  Score=47.58  Aligned_cols=85  Identities=16%  Similarity=0.266  Sum_probs=57.1

Q ss_pred             CCcEEEccCCcCcc-cCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeeccc-Cccc-CChhccCCCCCcee
Q 035702          104 FLRYINLADNGFHG-EIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNK-LEGQ-IPKEIGSLLKLQTL  180 (202)
Q Consensus       104 ~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~-~~g~-~p~~~~~l~~L~~L  180 (202)
                      .|+++|+++..++. ....-+..+.+|+.|.+.++++.+.+-..+++-..|+.++++.+. ++.. +.-.+.+++.|+.|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            47888888887763 233345667788888888888887777777777888888887653 3311 11235567777777


Q ss_pred             eccccccc
Q 035702          181 ALYYNYLT  188 (202)
Q Consensus       181 ~l~~N~l~  188 (202)
                      +++-+.++
T Consensus       266 NlsWc~l~  273 (419)
T KOG2120|consen  266 NLSWCFLF  273 (419)
T ss_pred             CchHhhcc
Confidence            77665443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.21  E-value=0.065  Score=40.58  Aligned_cols=83  Identities=16%  Similarity=0.131  Sum_probs=54.4

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcC-cccCchhcc-CCCCCCeEeCCCC-cCccCcChhccCCCCCcE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGF-HGEIPQEIG-NLLRLEKLALPNN-SFSGTIPTNLSRCSNLIY  155 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~p~~~~-~l~~L~~L~ls~n-~l~~~~p~~l~~l~~L~~  155 (202)
                      -.|+.++-++..+...--+.+..++.++.|.+.++.- ....-+.++ -.++|+.|++++| +||..--..+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            3477888888777664446677778888888877742 211112222 3578888888876 577555566777888888


Q ss_pred             EEeecc
Q 035702          156 FHVGNN  161 (202)
Q Consensus       156 L~l~~n  161 (202)
                      |.+.+=
T Consensus       181 L~l~~l  186 (221)
T KOG3864|consen  181 LHLYDL  186 (221)
T ss_pred             HHhcCc
Confidence            777653

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=88.35  E-value=0.29  Score=24.20  Aligned_cols=18  Identities=39%  Similarity=0.528  Sum_probs=13.4

Q ss_pred             CCCceeeccccccccccCh
Q 035702          175 LKLQTLALYYNYLTRQLPD  193 (202)
Q Consensus       175 ~~L~~L~l~~N~l~g~iP~  193 (202)
                      ++|+.|++++|+++ .+|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            36778888888887 7775

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=81.95  E-value=1.3  Score=21.80  Aligned_cols=13  Identities=38%  Similarity=0.588  Sum_probs=6.0

Q ss_pred             CCCeEeCCCCcCc
Q 035702          128 RLEKLALPNNSFS  140 (202)
Q Consensus       128 ~L~~L~ls~n~l~  140 (202)
                      +|+.|+++.|+++
T Consensus         3 ~L~~L~L~~NkI~   15 (26)
T smart00365        3 NLEELDLSQNKIK   15 (26)
T ss_pred             ccCEEECCCCccc
Confidence            4444444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-14
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-14
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		7e-13

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 9/132 (6%)
Query: 77  RHQRVTELNLSSQRIGGILSPYVGNLSF-LRYINLADNGFHGEIPQEIGNLLR-----LE 130
           + + +  L+LS     G L   + NLS  L  ++L+ N F G I   + NL +     L+
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI---LPNLCQNPKNTLQ 397
Query: 131 KLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQ 190
           +L L NN F+G IP  LS CS L+  H+  N L G IP  +GSL KL+ L L+ N L  +
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 191 LPDFIGNLSALE 202
           +P  +  +  LE
Sbjct: 458 IPQELMYVKTLE 469

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 9/132 (6%)
Query: 77  RHQRVTELNLSSQRIGGILSPYVGNLSF-LRYINLADNGFHGEIPQEIGNLLR-----LE 130
           + + +  L+LS     G L   + NLS  L  ++L+ N F G I   + NL +     L+
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI---LPNLCQNPKNTLQ 394
Query: 131 KLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQ 190
           +L L NN F+G IP  LS CS L+  H+  N L G IP  +GSL KL+ L L+ N L  +
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 191 LPDFIGNLSALE 202
           +P  +  +  LE
Sbjct: 455 IPQELMYVKTLE 466

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 84/195 (43%), Gaps = 33/195 (16%)
Query: 36  NETDRLALLTIKSQLHDPSGVTSSWNNTINLC--LWTGVTCGHRHQ--RVTELNLSSQR- 90
           N  D+ ALL IK  L +P+ + SSW  T + C   W GV C    Q  RV  L+LS    
Sbjct: 4   NPQDKQALLQIKKDLGNPTTL-SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 91  --------------------IGGI------LSPYVGNLSFLRYINLADNGFHGEIPQEIG 124
                               IGGI      + P +  L+ L Y+ +      G IP  + 
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 125 NLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQT-LALY 183
            +  L  L    N+ SGT+P ++S   NL+      N++ G IP   GS  KL T + + 
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 184 YNYLTRQLPDFIGNL 198
            N LT ++P    NL
Sbjct: 183 RNRLTGKIPPTFANL 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-23
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-30
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  165 bits (420), Expect = 7e-51
 Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 8/174 (4%)

Query: 35  TNETDRLALLTIKSQLHDPSGVTSSWNNTINLC--LWTGVTCGHRHQ--RVTELNLSSQR 90
            N  D+ ALL IK  L +P+ + SSW  T + C   W GV C    Q  RV  L+LS   
Sbjct: 3   CNPQDKQALLQIKKDLGNPTTL-SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 91  IGG--ILSPYVGNLSFLRYINLAD-NGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNL 147
           +     +   + NL +L ++ +   N   G IP  I  L +L  L + + + SG IP  L
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121

Query: 148 SRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
           S+   L+      N L G +P  I SL  L  +    N ++  +PD  G+ S L
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 93.8 bits (234), Expect = 2e-23
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 81  VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
            T + +S  R+ G + P   NL+ L +++L+ N   G+     G+    +K+ L  NS +
Sbjct: 176 FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSA 200
             +   +    NL    + NN++ G +P+ +  L  L +L + +N L  ++P   GNL  
Sbjct: 235 FDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQR 292

Query: 201 LE 202
            +
Sbjct: 293 FD 294

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 85.7 bits (213), Expect = 2e-20
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 2/104 (1%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             ++LS   + G  S   G+    + I+LA N    ++  ++G    L  L L NN   G
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYG 258

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYN 185
           T+P  L++   L   +V  N L G+IP+  G+L +    A   N
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  114 bits (288), Expect = 7e-30
 Identities = 47/121 (38%), Positives = 67/121 (55%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             L+LS   + G +   +G+LS LR + L  N   GEIPQE+  +  LE L L  N  +G
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
            IP+ LS C+NL +  + NN+L G+IPK IG L  L  L L  N  +  +P  +G+  +L
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540

Query: 202 E 202
            
Sbjct: 541 I 541

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  113 bits (284), Expect = 2e-29
 Identities = 39/121 (32%), Positives = 57/121 (47%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
            EL L +    G + P + N S L  ++L+ N   G IP  +G+L +L  L L  N   G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
            IP  L     L    +  N L G+IP  + +   L  ++L  N LT ++P +IG L  L
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516

Query: 202 E 202
            
Sbjct: 517 A 517

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  109 bits (274), Expect = 5e-28
 Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 28/170 (16%)

Query: 36  NETDRLALLTIKSQLHDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGIL 95
              +   L++ K  L D   +   W++  N C + GVTC  R  +VT ++LSS+ +    
Sbjct: 10  LYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPL---- 62

Query: 96  SPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIY 155
                            N     +   + +L  LE L L N+  +G++       ++L  
Sbjct: 63  -----------------NVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTS 104

Query: 156 FHVGNNKLEGQIP--KEIGSLLKLQTLALYYNYLTRQLPD-FIGNLSALE 202
             +  N L G +     +GS   L+ L +  N L           L++LE
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  109 bits (274), Expect = 6e-28
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             L++SS      + P++G+ S L++++++ N   G+  + I     L+ L + +N F G
Sbjct: 203 EFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEI-GSLLKLQTLALYYNYLTRQLPDFIGNLSA 200
            IP       +L Y  +  NK  G+IP  + G+   L  L L  N+    +P F G+ S 
Sbjct: 262 PIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319

Query: 201 LE 202
           LE
Sbjct: 320 LE 321

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  108 bits (272), Expect = 1e-27
 Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 2/123 (1%)

Query: 82  TELNLSSQRIGGILSPYVGN--LSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSF 139
             L+LSS    G + P +     + L+ + L +NGF G+IP  + N   L  L L  N  
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430

Query: 140 SGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS 199
           SGTIP++L   S L    +  N LEG+IP+E+  +  L+TL L +N LT ++P  + N +
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490

Query: 200 ALE 202
            L 
Sbjct: 491 NLN 493

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  103 bits (260), Expect = 4e-26
 Identities = 34/120 (28%), Positives = 49/120 (40%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
            +L L    + G +   +  +  L  + L  N   GEIP  + N   L  ++L NN  +G
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
            IP  + R  NL    + NN   G IP E+G    L  L L  N     +P  +   S  
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  101 bits (253), Expect = 4e-25
 Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 4/125 (3%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQE-IGNLLRLEKLALPNNSFS 140
           T L+LS     G + P+ G+ S L  + L+ N F GE+P + +  +  L+ L L  N FS
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

Query: 141 GTIPTNLSRCS-NLIYFHVGNNKLEGQIPKEIGSLLK--LQTLALYYNYLTRQLPDFIGN 197
           G +P +L+  S +L+   + +N   G I   +    K  LQ L L  N  T ++P  + N
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416

Query: 198 LSALE 202
            S L 
Sbjct: 417 CSELV 421

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.7 bits (239), Expect = 2e-23
 Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 82  TELNLSSQRI-GGILSPYVGNLSFLRYINLADNGFHGEIPQEI---GNLLRLEKLALPNN 137
             LN+SS  +           L+ L  ++L+ N   G              L+ LA+  N
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188

Query: 138 SFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGN 197
             SG +   +SRC NL +  V +N     IP  +G    LQ L +  N L+      I  
Sbjct: 189 KISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIST 245

Query: 198 LSALE 202
            + L+
Sbjct: 246 CTELK 250

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.4 bits (238), Expect = 4e-23
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 82  TELNLSSQRIGGILSPYV-GNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
             L+L+  +  G +  ++ G    L  ++L+ N F+G +P   G+   LE LAL +N+FS
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331

Query: 141 GTIPTN-LSRCSNLIYFHVGNNKLEGQIPKEIGSLL-KLQTLALYYNYLTRQLPDFIGNL 198
           G +P + L +   L    +  N+  G++P+ + +L   L TL L  N  +  +   +   
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391

Query: 199 S 199
            
Sbjct: 392 P 392

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.0 bits (237), Expect = 5e-23
 Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 4/121 (3%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSFS 140
             LN+SS +  G + P    L  L+Y++LA+N F GEIP  + G    L  L L  N F 
Sbjct: 250 KLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPKE-IGSLLKLQTLALYYNYLTRQLPDFIGNLS 199
           G +P     CS L    + +N   G++P + +  +  L+ L L +N  + +LP+ + NLS
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367

Query: 200 A 200
           A
Sbjct: 368 A 368

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 92.7 bits (231), Expect = 3e-22
 Identities = 31/119 (26%), Positives = 47/119 (39%)

Query: 84  LNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTI 143
              +     GI S  +  LS     N+    + G       N   +  L +  N  SG I
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648

Query: 144 PTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
           P  +     L   ++G+N + G IP E+G L  L  L L  N L  ++P  +  L+ L 
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 90.4 bits (225), Expect = 2e-21
 Identities = 35/113 (30%), Positives = 61/113 (53%)

Query: 81  VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
               N++S+  GG  SP   N   + +++++ N   G IP+EIG++  L  L L +N  S
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPD 193
           G+IP  +     L    + +NKL+G+IP+ + +L  L  + L  N L+  +P+
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.0 bits (219), Expect = 1e-20
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)

Query: 84  LNLSSQRIGGILSPYVGNLSFLRYINLADNG--FHGEIPQEIGNLLRLEKLALPNNSFSG 141
             +++  I G    Y+ N    +  + A N   F G   +++  L       + +  + G
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
                     ++++  +  N L G IPKEIGS+  L  L L +N ++  +PD +G+L  L
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682

Query: 202 E 202
            
Sbjct: 683 N 683

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.7 bits (213), Expect = 7e-20
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 84  LNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTI 143
           ++LS+ R+ G +  ++G L  L  + L++N F G IP E+G+   L  L L  N F+GTI
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554

Query: 144 PTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNY--LTRQLPDFIGNLSAL 201
           P  + + S  I      N + G+    I +    +      N         + +  LS  
Sbjct: 555 PAAMFKQSGKI----AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610

Query: 202 E 202
            
Sbjct: 611 N 611

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.6 bits (184), Expect = 5e-16
 Identities = 29/90 (32%), Positives = 45/90 (50%)

Query: 79  QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNS 138
             +  L++S   + G +   +G++ +L  +NL  N   G IP E+G+L  L  L L +N 
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691

Query: 139 FSGTIPTNLSRCSNLIYFHVGNNKLEGQIP 168
             G IP  +S  + L    + NN L G IP
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.4 bits (181), Expect = 2e-15
 Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNN--SF 139
             L+L++    G +   +   S      +A N   G+    I N    ++     N   F
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596

Query: 140 SGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS 199
            G     L+R S     ++ +    G       +   +  L + YN L+  +P  IG++ 
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656

Query: 200 ALE 202
            L 
Sbjct: 657 YLF 659

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 97.0 bits (242), Expect = 9e-24
 Identities = 39/181 (21%), Positives = 66/181 (36%), Gaps = 19/181 (10%)

Query: 39  DRLALLTIKSQLHDP--------SGVTSSWNNTINLCLWT---GVTCGHRHQRVTELNLS 87
           D LAL  I   L+          +   ++WN    L +W    GV+    + RVT L+L 
Sbjct: 31  DYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLN-SNGRVTGLSLE 89

Query: 88  SQRIGGILSPYVGNLSFLRYINLADNGFHG----EIPQEIGNLLRLEKLALPNNSFSGTI 143
                G +   +G L+ L  + L  +G         P+ I   +  E+       +  T 
Sbjct: 90  GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTF 149

Query: 144 PTNLSR--CSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
                R   S+LI   + ++  +  I K     LK   +    N +T  +   +  L+ L
Sbjct: 150 VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKL 208

Query: 202 E 202
            
Sbjct: 209 R 209

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 6/123 (4%)

Query: 80  RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSF 139
            + +  ++S      +            I    N     + + +  L +L +  + N+ F
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPF 218

Query: 140 SGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS 199
                       N  Y      +       +  +L  L  + +Y      +LP F+  L 
Sbjct: 219 VAENICEAWENENSEY-----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273

Query: 200 ALE 202
            ++
Sbjct: 274 EMQ 276

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 29/149 (19%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGE-------------------IPQE 122
           T++   S  I  + S  V  L+ LR   + ++ F  E                      +
Sbjct: 186 TQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244

Query: 123 IGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKL--------EGQIPKEIGSL 174
             NL  L  + + N      +PT L     +   +V  N+         + Q   +    
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304

Query: 175 LKLQTLALYYNYLTR-QLPDFIGNLSALE 202
            K+Q + + YN L    +   +  +  L 
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLG 333

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.1 bits (167), Expect = 9e-14
 Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 16/137 (11%)

Query: 82  TELNLSSQRIGGILSPY-VGNLSFLRYINLADNGFHG-------EIPQEIGNLLRLEKLA 133
             L+ +  ++  I + +   ++S +  I+ + N            +       + +  + 
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 134 LPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEG-------QIPKEIGSLLKLQTLALYYNY 186
           L NN  S       S  S L   ++  N L            +   +   L ++ L +N 
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 187 LTRQLPDF-IGNLSALE 202
           LT+   DF    L  L 
Sbjct: 500 LTKLSDDFRATTLPYLV 516

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 12/131 (9%)

Query: 82  TELNLSSQRI-GGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
             + +    +    +   +  +  L  +    N   G++P   G+ ++L  L L  N  +
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT 366

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPK--EIGSLLKLQTLALYYNYLT-------RQL 191
                       +      +NKL+  IP   +  S+  +  +   YN +          L
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

Query: 192 PDFIGNLSALE 202
                    + 
Sbjct: 426 DPTPFKGINVS 436

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 17/122 (13%)

Query: 82  TELNLSSQRIGGI-------LSPYVGNLSFLRYINLADNGFHGEIPQEI--GNLLRLEKL 132
           + +NL    +  I        +    N   L  I+L  N     +  +     L  L  +
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGI 518

Query: 133 ALPNNSFSGTIPTNLSRCSNLIYFHVGN------NKLEGQIPKEIGSLLKLQTLALYYNY 186
            L  NSFS   PT     S L  F + N      N+   + P+ I     L  L +  N 
Sbjct: 519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 187 LT 188
           + 
Sbjct: 578 IR 579

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 8e-11
 Identities = 16/113 (14%), Positives = 34/113 (30%), Gaps = 10/113 (8%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYI------NLADNGFHGEIPQEIGNLLRLEKLALP 135
             ++LS             N S L+        +   N    E P+ I     L +L + 
Sbjct: 516 VGIDLSYNSFSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574

Query: 136 NNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT 188
           +N     +   +    N+    + +N         +   ++     L+Y+   
Sbjct: 575 SNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 84.3 bits (209), Expect = 2e-19
 Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 1/123 (0%)

Query: 81  VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
              L+LS   +  + S    +   L+ ++L+             +L  L  L L  N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTR-QLPDFIGNLS 199
                  S  S+L         L       IG L  L+ L + +N +   +LP++  NL+
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 200 ALE 202
            LE
Sbjct: 150 NLE 152

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 2/123 (1%)

Query: 82  TELNLSSQRIGGILSPYV-GNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
             L+     +  +    V  +L  L Y++++              L  LE L +  NSF 
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 141 GTIPTN-LSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS 199
                +  +   NL +  +   +LE   P    SL  LQ L + +N            L+
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 200 ALE 202
           +L+
Sbjct: 519 SLQ 521

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 4e-13
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHG-EIPQEIGNLLRLEKLALPNNSFS 140
            +L      +  + +  +G+L  L+ +N+A N     ++P+   NL  LE L L +N   
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 141 GTIPTNLSRCSNLIYFHV----GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP-DFI 195
               T+L     +   ++      N +   I       ++L  L L  N+ +  +    I
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221

Query: 196 GNLSALE 202
             L+ LE
Sbjct: 222 QGLAGLE 228

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.1 bits (154), Expect = 4e-12
 Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 2/109 (1%)

Query: 82  TELNLSSQRIGGILSPYV-GNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
             L ++         P +   L  L +++L+        P    +L  L+ L + +N+F 
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLK-LQTLALYYNYLT 188
                     ++L       N +     +E+      L  L L  N   
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNG--FHGEIPQEIGNLLRLEKLALPNNSF 139
             L  +S + G   S    +L  L +++L+ NG  F G   Q       L+ L L  N  
Sbjct: 328 KRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 140 SGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEI-GSLLKLQTLALYYNYLTRQLPDFIGNL 198
             T+ +N      L +    ++ L+      +  SL  L  L + + +           L
Sbjct: 386 I-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 199 SALE 202
           S+LE
Sbjct: 445 SSLE 448

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 3/127 (2%)

Query: 79  QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNS 138
           + +T L+LS  ++  +      +LS L+ +N++ N F          L  L+ L    N 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 139 FSGTIPTNLSRC-SNLIYFHVGNNKLEGQIPKE--IGSLLKLQTLALYYNYLTRQLPDFI 195
              +    L    S+L + ++  N        +  +  +   + L +    +    P   
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

Query: 196 GNLSALE 202
             +  L 
Sbjct: 590 QGMPVLS 596

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 10/126 (7%)

Query: 79  QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNS 138
             V+  +L S  I  +           +++ L +  F      ++ +L RL        S
Sbjct: 282 TNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT-----FTS 334

Query: 139 FSGTIPTNLSRCSNLIYFHVGNNKL--EGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIG 196
             G    +     +L +  +  N L  +G   +       L+ L L +N +   +     
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 393

Query: 197 NLSALE 202
            L  LE
Sbjct: 394 GLEQLE 399

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.4 bits (199), Expect = 6e-18
 Identities = 27/122 (22%), Positives = 48/122 (39%)

Query: 81  VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
           +T LNL+  ++  + +      S L  +++  N      P+    L  L+ L L +N  S
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSA 200
                  + C+NL   H+ +N ++            L TL L +N L+         L  
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 201 LE 202
           L+
Sbjct: 147 LQ 148

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.3 bits (178), Expect = 3e-15
 Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 2/122 (1%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
           TEL+L S  I  I +        L  ++L+ NG           L  L++L L NN    
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159

Query: 142 TIPTNLS--RCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS 199
                L     S+L    + +N+++   P    ++ +L  L L    L   L + +    
Sbjct: 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219

Query: 200 AL 201
           A 
Sbjct: 220 AN 221

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 25/124 (20%), Positives = 43/124 (34%)

Query: 76  HRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALP 135
            R+ ++T L++    I  +       L  L+ +NL  N       +       L +L L 
Sbjct: 46  TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105

Query: 136 NNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFI 195
           +NS          +  NLI   + +N L          L  LQ L L  N +     + +
Sbjct: 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165

Query: 196 GNLS 199
              +
Sbjct: 166 DIFA 169

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 11/132 (8%)

Query: 82  TELNLSSQRIGGILSPYV-GNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
             L+L    IG  L+      L  +  I L+ N +          +  L++L L   +  
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 141 G--TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTR--------Q 190
              + P+      NL    + NN +       +  L KL+ L L +N L R         
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 191 LPDFIGNLSALE 202
              F+  LS L 
Sbjct: 528 PIYFLKGLSHLH 539

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 3/121 (2%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
              + S  ++  +        + +  +NL  N              +L  L +  N+ S 
Sbjct: 7   EVADCSHLKLTQVPD---DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
             P    +   L   ++ +N+L     K       L  L L  N + +   +       L
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 202 E 202
            
Sbjct: 124 I 124

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 28/130 (21%), Positives = 41/130 (31%), Gaps = 9/130 (6%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADN--------GFHGEIPQEIGNLLRLEKLA 133
           T L+LS+  I  I    +  L  L  ++L  N           G     +  L  L  L 
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 134 LPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPD 193
           L +N F             L    +G N L         + + L++L L  N +T     
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602

Query: 194 -FIGNLSALE 202
            F      L 
Sbjct: 603 VFGPAFRNLT 612

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 11/153 (7%)

Query: 61  NNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSF--LRYINLADNGFHGE 118
           N  +   L   +     +  +  L+LS+ ++    +     L +  L  ++L+ N  +  
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263

Query: 119 IPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNN---------KLEGQIPK 169
                  L +LE   L  N+       +L    N+ Y ++  +          L      
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 170 EIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
               L  L+ L +  N +     +    L  L+
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 9/123 (7%)

Query: 75  GHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLAL 134
           G +   +T L+LS   +  + +     L  L Y  L  N         +  L  +  L L
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 135 PNNSFSGTIPTN---------LSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYN 185
             +    +I                  L + ++ +N + G        L+ L+ L+L  +
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 186 YLT 188
           + +
Sbjct: 364 FTS 366

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 6e-11
 Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 14/138 (10%)

Query: 79  QRVTELNLSSQRIGGILSPYVG---NLSFLRYINLADNGFHGEIPQEIGNL--LRLEKLA 133
            R+  L L++ ++G  L+  +      + +R ++L+++            L    L  L 
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254

Query: 134 LPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQL-- 191
           L  N+ +     + +    L YF +  N ++      +  L  ++ L L  ++  + +  
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 192 -------PDFIGNLSALE 202
                        L  LE
Sbjct: 315 ASLPKIDDFSFQWLKCLE 332

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
           T+ ++S   +  I       L  L ++N+ DN   G        L+ L+ L+L N+  S 
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

Query: 142 TIPTNLS----RCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP-DFIG 196
              TN +      S L   ++  NK+          L  L+ L L  N + ++L      
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427

Query: 197 NLSALE 202
            L  + 
Sbjct: 428 GLENIF 433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 1/105 (0%)

Query: 85  NLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIP 144
            L      G    ++  LS L  +NL  NGF     +   +L  L+ + L  N+ +    
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 145 TNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLK-LQTLALYYNYLT 188
           +  +   +L   ++  N +     K  G   + L  L + +N   
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 29/136 (21%), Positives = 46/136 (33%), Gaps = 13/136 (9%)

Query: 80  RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEI---------PQEIGNLLRLE 130
           ++    L    I  + S  +  L  +RY+NL  +     I               L  LE
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 131 KLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQ-IPKEIGSLL---KLQTLALYYNY 186
            L + +N   G      +   NL Y  + N+    + +  E    L    L  L L  N 
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 187 LTRQLPDFIGNLSALE 202
           +++   D    L  LE
Sbjct: 393 ISKIESDAFSWLGHLE 408

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 4/122 (3%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             L L    I   L   + NL  L+ + + ++     +   I +L +LE+L L   +   
Sbjct: 186 QSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR 243

Query: 142 TIPTNLSRCSNLIYFHV-GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSA 200
             P      + L    +   + L   +P +I  L +L+ L L       +LP  I  L A
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

Query: 201 LE 202
             
Sbjct: 303 NC 304

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.4 bits (168), Expect = 4e-14
 Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 15/136 (11%)

Query: 77  RHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPN 136
                  L L S  +          LS L+++ +   G   E+P  +     LE L L  
Sbjct: 79  TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLAR 136

Query: 137 NSFSGTIPTNLSRCSNLIYFHV-GNNKLEGQIPKEIGS---------LLKLQTLALYYNY 186
           N     +P +++  + L    +    +L  ++P+ + S         L+ LQ+L L +  
Sbjct: 137 NPLR-ALPASIASLNRLRELSIRACPELT-ELPEPLASTDASGEHQGLVNLQSLRLEWTG 194

Query: 187 LTRQLPDFIGNLSALE 202
           +   LP  I NL  L+
Sbjct: 195 IR-SLPASIANLQNLK 209

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 1/111 (0%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             L + +  +   L P + +L  L  ++L         P   G    L++L L + S   
Sbjct: 209 KSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP 192
           T+P ++ R + L    +       ++P  I  L     + +  +   +   
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.3 bits (152), Expect = 5e-12
 Identities = 28/110 (25%), Positives = 40/110 (36%), Gaps = 6/110 (5%)

Query: 95  LSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLI 154
            S     L  L+ + L   G    +P  I NL  L+ L + N+  S  +   +     L 
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLE 232

Query: 155 YFHV-GNNKLEGQIPKEIGSLLKLQTLALY-YNYLTRQLPDFIGNLSALE 202
              + G   L    P   G    L+ L L   + L   LP  I  L+ LE
Sbjct: 233 ELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLE 280

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 16/131 (12%), Positives = 31/131 (23%), Gaps = 23/131 (17%)

Query: 93  GILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG----------- 141
           G    +  + S    +    +         +    R           +            
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61

Query: 142 --------TIPTNLSRCS--NLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQL 191
                        L   +    +   + +  L  Q P +   L  LQ + +    L   L
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-L 119

Query: 192 PDFIGNLSALE 202
           PD +   + LE
Sbjct: 120 PDTMQQFAGLE 130

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.6 bits (176), Expect = 5e-15
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 1/123 (0%)

Query: 81  VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
              ++LS   +  + S    N S L++++L+         +    L  L  L L  N   
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTR-QLPDFIGNLS 199
              P + S  ++L        KL       IG L+ L+ L + +N++   +LP +  NL+
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153

Query: 200 ALE 202
            L 
Sbjct: 154 NLV 156

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 20/122 (16%), Positives = 32/122 (26%), Gaps = 1/122 (0%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSFS 140
             L++S              L+ L  + +A N F       +  N   L  L L      
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSA 200
                       L   ++ +N L          L  L TL   +N +            +
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS 546

Query: 201 LE 202
           L 
Sbjct: 547 LA 548

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 2/123 (1%)

Query: 82  TELNLSSQRIGGILSPYV-GNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
             L+     +  +       +L  L Y++++      +       L  L  L +  NSF 
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 141 GTIPTN-LSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS 199
               +N  +  +NL +  +   +LE        +L +LQ L + +N L          L 
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521

Query: 200 ALE 202
           +L 
Sbjct: 522 SLS 524

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 25/121 (20%), Positives = 40/121 (33%), Gaps = 1/121 (0%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             L+LS   I  I       L  L  + L  N      P     L  LE L       + 
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEG-QIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSA 200
                + +   L   +V +N +   ++P    +L  L  + L YNY+     + +  L  
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

Query: 201 L 201
            
Sbjct: 179 N 179

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 7/127 (5%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHG-EIPQEIGNLLRLEKLALPNNSFS 140
             L     ++  + S  +G L  L+ +N+A N  H  ++P    NL  L  + L  N   
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 141 GTIPTNLSRCSNL----IYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP-DFI 195
                +L          +   +  N ++  I  +    +KL  L L  N+ +  +    +
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCL 225

Query: 196 GNLSALE 202
            NL+ L 
Sbjct: 226 QNLAGLH 232

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 1/105 (0%)

Query: 82  TELNLSS-QRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
             L ++        LS    N + L +++L+              L RL+ L + +N+  
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYN 185
               ++ ++  +L       N++E            L    L  N
Sbjct: 511 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 19/100 (19%), Positives = 29/100 (29%)

Query: 103 SFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNK 162
           S  + I+L+ N           N   L+ L L                 +L    +  N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 163 LEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
           ++   P     L  L+ L      L       IG L  L+
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 17/85 (20%), Positives = 31/85 (36%)

Query: 79  QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNS 138
             +T L+LS  ++  I       L  L+ +N++ N            L  L  L    N 
Sbjct: 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532

Query: 139 FSGTIPTNLSRCSNLIYFHVGNNKL 163
              +         +L +F++ NN +
Sbjct: 533 IETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 9/136 (6%)

Query: 70  TGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRL 129
             +    +H +   L++   ++    +    +L FL+ + L  N   G I  +   L  L
Sbjct: 298 KYLEDVPKHFKWQSLSIIRCQLKQFPT---LDLPFLKSLTLTMN--KGSISFKKVALPSL 352

Query: 130 EKLALPNNSFSGTIPTNLSR--CSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYL 187
             L L  N+ S +   + S    ++L +  +  N     +      L +LQ L   ++ L
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTL 411

Query: 188 TRQLP-DFIGNLSALE 202
            R        +L  L 
Sbjct: 412 KRVTEFSAFLSLEKLL 427

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 7/120 (5%)

Query: 80  RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSF 139
            + E  L+              L+ +  ++LA      +  +++    + + L++     
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQL 319

Query: 140 SGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS 199
                 +L     L    +  NK    I  +  +L  L  L L  N L+        +L 
Sbjct: 320 KQFPTLDL---PFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 11/129 (8%)

Query: 82  TELNLSS-QRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNL--------LRLEKL 132
            EL L        I+   + NL+ L    L    F  E   EI           + +++ 
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 133 ALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP 192
            L   +            +N+    +    ++    +++    K Q+L++    L +   
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPT 324

Query: 193 DFIGNLSAL 201
             +  L +L
Sbjct: 325 LDLPFLKSL 333

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.9 bits (171), Expect = 2e-14
 Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 15/132 (11%)

Query: 80  RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSF 139
           + T++   + RI  I S  +  L+ L+ I  A++ F  +           +         
Sbjct: 426 KDTQIGNLTNRITFI-SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD-----YAKQ 479

Query: 140 SGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT---------RQ 190
                 + S   +L    + N     Q+P  +  L +LQ+L +  N             +
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

Query: 191 LPDFIGNLSALE 202
           L D       ++
Sbjct: 540 LADDEDTGPKIQ 551

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.6 bits (165), Expect = 1e-13
 Identities = 22/142 (15%), Positives = 43/142 (30%), Gaps = 17/142 (11%)

Query: 76  HRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGF-------HGEIPQEIGNLLR 128
           ++    + + LS   I    +      S +  I L++N                  N   
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729

Query: 129 LEKLALPNNSFSGTIPTNLSRC--SNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYY-- 184
           L  + L  N  + ++  +        L    V  N      P +  +  +L+   + +  
Sbjct: 730 LTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787

Query: 185 ----NYLTRQLPDFIGNLSALE 202
               N + RQ P  I    +L 
Sbjct: 788 DAEGNRILRQWPTGITTCPSLI 809

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.4 bits (162), Expect = 4e-13
 Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 13/128 (10%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHG---------EIPQEIGNLLRLEKL 132
           T++ L +      L  ++ +L  L+ +N+A N              +  +     +++  
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 133 ALPNNSFSG-TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQL 191
            +  N+        +L +   L      +NK+     +  G+ +KL  L L YN +  ++
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EI 610

Query: 192 PDFIGNLS 199
           P+     +
Sbjct: 611 PEDFCAFT 618

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.4 bits (154), Expect = 4e-12
 Identities = 28/157 (17%), Positives = 47/157 (29%), Gaps = 16/157 (10%)

Query: 36  NETDRLALLTIKSQLHDP--SGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGG 93
              D  AL  I   L        + + NNTI+   W               N      G 
Sbjct: 267 YIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWN-------------FNKELDMWGD 313

Query: 94  ILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNL 153
                + N   +  ++LA  G  G +P  IG L  L+ L+   +S + +           
Sbjct: 314 QPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTP 373

Query: 154 IYFHVGNNKLEGQIPKEIGSLL-KLQTLALYYNYLTR 189
                  +++     K       +L    L  + + R
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.0 bits (153), Expect = 5e-12
 Identities = 27/138 (19%), Positives = 44/138 (31%), Gaps = 17/138 (12%)

Query: 79  QRVTELNLSSQRIGGI-------LSPYVGNLSFLRYINLADNGFHGEIPQEI--GNLLRL 129
             ++ + LS+  +  I             N   L  I+L  N     +  +     L  L
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL 755

Query: 130 EKLALPNNSFSGTIPTNLSRCSNLIYFH------VGNNKLEGQIPKEIGSLLKLQTLALY 183
             + +  N FS + PT     S L  F          N++  Q P  I +   L  L + 
Sbjct: 756 SNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814

Query: 184 YNYLTRQLPDFIGNLSAL 201
            N + +        L  L
Sbjct: 815 SNDIRKVDEKLTPQLYIL 832

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.3 bits (146), Expect = 4e-11
 Identities = 17/135 (12%), Positives = 40/135 (29%), Gaps = 15/135 (11%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQ--EIGNLLRLEKLALPNNSF 139
           T+L L   +I  I   +      +  +  + N     IP      ++  +  +    N  
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKI 656

Query: 140 SG-----TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT------ 188
                  +   +  +  N     +  N+++    +   +   + T+ L  N +T      
Sbjct: 657 GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716

Query: 189 -RQLPDFIGNLSALE 202
            +       N   L 
Sbjct: 717 LKPKDGNYKNTYLLT 731

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 8/124 (6%)

Query: 82  TELNLSSQRIGGI-LSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
               +    +     S  +  +  L  ++   N       +  G  ++L  L L  N   
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE 608

Query: 141 GTIPTNL-SRCSNLIYFHVGNNKLEGQIPK--EIGSLLKLQTLALYYNYLTRQLPDFIGN 197
             IP +  +    +      +NKL+  IP      S+  + ++   YN +  +  +   +
Sbjct: 609 -EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 198 LSAL 201
           +   
Sbjct: 667 MDDY 670

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 6e-09
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 31/136 (22%)

Query: 82  TELNLSSQRIGGI-LSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLAL------ 134
           T ++L   ++  +        L +L  ++++ N F    P +  N  +L+   +      
Sbjct: 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDA 789

Query: 135 PNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGS--------------------- 173
             N      PT ++ C +LI   +G+N +   + +++                       
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLTPQLYILDIADNPNISIDVTSVC 848

Query: 174 -LLKLQTLALYYNYLT 188
             ++     L Y+   
Sbjct: 849 PYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 10/66 (15%), Positives = 23/66 (34%)

Query: 137 NSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIG 196
           + +      +L     +    +     +G++P  IG L +L+ L+   +  T     F  
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 197 NLSALE 202
                +
Sbjct: 369 EELTPD 374

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 1/96 (1%)

Query: 108 INLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQI 167
            N   + +  +   ++ N  R+  L+L      G +P  + + + L     G +      
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 168 PKEIGSLLKLQTLALYYNYLTRQL-PDFIGNLSALE 202
                  L         + +       F+     L 
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 20/122 (16%), Positives = 38/122 (31%)

Query: 81  VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
              L  S   +  I +     L  L +++L     +        +  RL+ L L  N   
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSA 200
               T LS    L +       +       + +   L++L L  N+++            
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 201 LE 202
           L+
Sbjct: 155 LK 156

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 20/121 (16%), Positives = 37/121 (30%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
           T L+L+  +I  I      +   L  + L  N         +     L+ L       S 
Sbjct: 60  TFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
                L     L   ++G+N +      +     KL+ L    N +     + + +L   
Sbjct: 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179

Query: 202 E 202
            
Sbjct: 180 T 180

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 4/125 (3%)

Query: 82  TELNLSSQRIGGILSPYV-GNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
             L+L+  R+    +     NL  L+ +NL+ +       Q    L  L+ L L  N F 
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 141 GTI---PTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGN 197
                   +L     L    +    L         SL  +  + L +N LT    + + +
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 198 LSALE 202
           L  + 
Sbjct: 523 LKGIY 527

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 7e-11
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 4/131 (3%)

Query: 75  GHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLAL 134
           G     V  +NL       I S      S L+ ++L       E+P  +  L  L+KL L
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVL 308

Query: 135 PNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKE-IGSLLKLQTLALYYNYLTRQ--L 191
             N F      + S   +L +  +  N    ++    + +L  L+ L L ++ +      
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368

Query: 192 PDFIGNLSALE 202
              + NLS L+
Sbjct: 369 NLQLRNLSHLQ 379

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 4/126 (3%)

Query: 80  RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSF 139
            + EL+L++  +  +    +  LS L+ + L+ N F         N   L  L++  N+ 
Sbjct: 279 GLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 140 SGTIPTN-LSRCSNLIYFHVGNNKLE--GQIPKEIGSLLKLQTLALYYNYLTRQLPDFIG 196
              + T  L    NL    + ++ +E       ++ +L  LQ+L L YN       +   
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 197 NLSALE 202
               LE
Sbjct: 398 ECPQLE 403

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 1/122 (0%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             L L++  +  +    +     L+++     G        + N   LE L L +N  S 
Sbjct: 84  DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT-RQLPDFIGNLSA 200
                      L      NN +     +++ SL +   L+L  N      +     + + 
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203

Query: 201 LE 202
            +
Sbjct: 204 FQ 205

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 31/124 (25%), Positives = 46/124 (37%), Gaps = 4/124 (3%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIG---NLLRLEKLALPNNS 138
             LNLS   +          L  L+++NL  N F     Q+      L RLE L L    
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 139 FSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNL 198
            S       +    + +  + +N+L      E  S LK   L L  N+++  LP  +  L
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGIYLNLASNHISIILPSLLPIL 546

Query: 199 SALE 202
           S   
Sbjct: 547 SQQR 550

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 4/125 (3%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEI-PQEIGNLLRLEKLALPNN--S 138
            +L LS+ +   +      N   L ++++  N    E+    + NL  L +L L ++   
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363

Query: 139 FSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPD-FIGN 197
            S      L   S+L   ++  N+      +      +L+ L L +  L  +       N
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423

Query: 198 LSALE 202
           L  L+
Sbjct: 424 LHLLK 428

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 17/130 (13%), Positives = 30/130 (23%), Gaps = 4/130 (3%)

Query: 73  TCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKL 132
            C  +    T  N  +  +  I        +    +  + N            L+ L  L
Sbjct: 7   KCIEKEVNKT-YNCENLGLNEIPG---TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFL 62

Query: 133 ALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP 192
            L                  L    +  N L       +     L+ L      ++    
Sbjct: 63  DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF 122

Query: 193 DFIGNLSALE 202
             + N   LE
Sbjct: 123 IPLHNQKTLE 132

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 6/130 (4%)

Query: 77  RHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGN--LLRLEKLAL 134
           +      LNL+   I GI  P   + +  + +N         I + + N  +  L     
Sbjct: 177 QQATNLSLNLNGNDIAGI-EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235

Query: 135 PNNSFSGTIPTNLSRCS--NLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP 192
            +       P         ++   ++  +               LQ L L   +L+ +LP
Sbjct: 236 EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELP 294

Query: 193 DFIGNLSALE 202
             +  LS L+
Sbjct: 295 SGLVGLSTLK 304

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 4/110 (3%)

Query: 82  TELNLSSQRIGGILSPYVG---NLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNS 138
             LNL                  L  L  + L+             +L  +  + L +N 
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511

Query: 139 FSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT 188
            + +    LS    + Y ++ +N +   +P  +  L + +T+ L  N L 
Sbjct: 512 LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 5/127 (3%)

Query: 79  QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNL--LRLEKLALPN 136
           + +  L L S  I  I  P       L+ ++  +N  H    +++ +L       L L  
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 137 NSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIG--SLLKLQTLALYYNYLTRQLPDF 194
           N  +  I       +     + G  +    I K +   ++  L              P  
Sbjct: 189 NDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 195 IGNLSAL 201
              L  +
Sbjct: 248 FEGLCEM 254

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 80  RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSF 139
           R+  L LS   +  I      +L  + +++L+ N       + + +L  +  L L +N  
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHI 535

Query: 140 SGTIPTNLSRCSNLIYFHVGNNKLEG 165
           S  +P+ L   S     ++  N L+ 
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPLDC 561

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.5 bits (164), Expect = 1e-13
 Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 7/145 (4%)

Query: 58  SSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHG 117
           +  ++  +  L         +  V  L+L+ + +  +   ++  L  + +++L+ N    
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLR- 476

Query: 118 EIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEG-QIPKEIGSLLK 176
            +P  +  L  LE L   +N+    +   ++    L    + NN+L+     + + S  +
Sbjct: 477 ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR 534

Query: 177 LQTLALYYNYLTRQLPDFIGNLSAL 201
           L  L L  N L  Q       L+ +
Sbjct: 535 LVLLNLQGNSLC-QEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.7 bits (97), Expect = 9e-05
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 115 FHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSL 174
           F  E          +  L L +     T+  +L +   + +  + +N+L   +P  + +L
Sbjct: 429 FLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAAL 485

Query: 175 LKLQTLALYYNYLTRQLPDFIGNLSALE 202
             L+ L    N L   +   + NL  L+
Sbjct: 486 RCLEVLQASDNALEN-VDG-VANLPRLQ 511

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 1/123 (0%)

Query: 81  VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
              L+LS   +  + S    +   L+ ++L+             +L  L  L L  N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTR-QLPDFIGNLS 199
                  S  S+L         L       IG L  L+ L + +N +   +LP++  NL+
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 200 ALE 202
            LE
Sbjct: 150 NLE 152

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 1/128 (0%)

Query: 76  HRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALP 135
                +  L+LS   I  I      +LS L  + L  N            L  L+KL   
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 136 NNSFSGTIPTNLSRCSNLIYFHVGNNKL-EGQIPKEIGSLLKLQTLALYYNYLTRQLPDF 194
             + +      +     L   +V +N +   ++P+   +L  L+ L L  N +       
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 195 IGNLSALE 202
           +  L  + 
Sbjct: 169 LRVLHQMP 176

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGF-HGEIPQEIGNLLRLEKLALPNNSFS 140
            +L      +  + +  +G+L  L+ +N+A N     ++P+   NL  LE L L +N   
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 141 GTIPTNLSRCSNLIYF----HVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPD-FI 195
               T+L     +        +  N +   I       ++L  L L  N+ +  +    I
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221

Query: 196 GNLSALE 202
             L+ LE
Sbjct: 222 QGLAGLE 228

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 6e-08
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 4/124 (3%)

Query: 82  TELNLSSQRIGGILSPYV-GNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
             L+     +  +    V  +L  L Y++++              L  LE L +  NSF 
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 141 GTIPTN-LSRCSNLIYFHVGNNKLEGQIPKEI-GSLLKLQTLALYYNYLTRQLPDFIGNL 198
                +  +   NL +  +   +LE Q+      SL  LQ L +  N L          L
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517

Query: 199 SALE 202
           ++L+
Sbjct: 518 TSLQ 521

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 5/122 (4%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHG-EIPQEIGNLLRLEKLALPNNSFS 140
             + L++ +I  +     G  S ++Y++L  N        +   +   LE L L  N   
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSA 200
             +   +   + L    + +NKL   +  E  S   +  ++L  N L   +   +     
Sbjct: 183 -DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQN 238

Query: 201 LE 202
           LE
Sbjct: 239 LE 240

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 6/126 (4%)

Query: 79  QRVTELNLSSQRIGGILSP-YVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNN 137
            RV  L+L    I  +       +   L ++NL  N  + ++  ++    +L+ L L +N
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSN 201

Query: 138 SFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTR-QLPDFIG 196
             +  +       + + +  + NNKL   I K +     L+   L  N      L DF  
Sbjct: 202 KLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259

Query: 197 NLSALE 202
               ++
Sbjct: 260 KNQRVQ 265

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             LNLSS  +       + +LS LR ++L +N       QE+     +E L   NN+ S 
Sbjct: 61  ELLNLSSNVLYET--LDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS- 112

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTR-QLPDFIGNLSA 200
            +  +          ++ NNK+      + G   ++Q L L  N +      +   +   
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 201 LE 202
           LE
Sbjct: 171 LE 172

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 79  QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNS 138
            R     ++   +   L+    +   ++ ++L+ N        ++    +LE L L +N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 139 FSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTR 189
                  +L   S L    + NN ++     E+     ++TL    N ++R
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 119 IPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQ 178
           I +   N  R +   + ++S    + +      N+    +  N L      ++    KL+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 179 TLALYYNYLTRQLPDFIGNLSALE 202
            L L  N L  +  D   +LS L 
Sbjct: 62  LLNLSSNVLY-ETLDL-ESLSTLR 83

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 7/102 (6%)

Query: 101 NLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGN 160
           N +  +   + D+     +     +   +++L L  N  S     +L+  + L   ++ +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 161 NKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
           N L      ++ SL  L+TL L  NY+       +    ++E
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIE 102

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.9 bits (141), Expect = 2e-10
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 8/121 (6%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             L + + +I  +    + NLS L ++ +  N         + +L +L+ L + +N  S 
Sbjct: 224 NSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD 279

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
              + L+  S L    + NN+L  +  + IG L  L TL L  N++T   P  + +LS +
Sbjct: 280 --ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335

Query: 202 E 202
           +
Sbjct: 336 D 336

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.3 bits (129), Expect = 8e-09
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 9/121 (7%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             LNL+  +I  I    + NL  L  + +  N         + NL  L +L L  ++ S 
Sbjct: 69  EYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISD 124

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
             P  L+  + +   ++G N         + ++  L  L +  + +       I NL+ L
Sbjct: 125 ISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDL 179

Query: 202 E 202
            
Sbjct: 180 Y 180

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 9e-09
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 6/108 (5%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
           T L + + +I  I    V +L+ L+ +N+  N         + NL +L  L L NN    
Sbjct: 246 TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGN 301

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTR 189
                +   +NL    +  N +    P  + SL K+ +       + +
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 10/121 (8%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             L+L+  +I  I    + +L+ L Y     N      P  + N+ RL  L + NN  + 
Sbjct: 180 YSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD 235

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
             P  L+  S L +  +G N++       +  L KL+ L +  N ++      + NLS L
Sbjct: 236 LSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQL 289

Query: 202 E 202
            
Sbjct: 290 N 290

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.4 bits (124), Expect = 4e-08
 Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 10/124 (8%)

Query: 79  QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNS 138
                  L    +  +       L  +  + +A         Q I  L  LE L L  N 
Sbjct: 22  AEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQ 77

Query: 139 FSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNL 198
            +   P  LS    L   ++G NK+       + +L  L+ L L  + ++      + NL
Sbjct: 78  ITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD--ISPLANL 131

Query: 199 SALE 202
           + + 
Sbjct: 132 TKMY 135

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.6 bits (122), Expect = 6e-08
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 9/121 (7%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
           T L + + +I  I    + NL+ LR + L ++      P  + NL ++  L L  N    
Sbjct: 91  TNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNL- 145

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
           +  + LS  + L Y  V  +K++   P  I +L  L +L+L YN +       + +L++L
Sbjct: 146 SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED--ISPLASLTSL 201

Query: 202 E 202
            
Sbjct: 202 H 202

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 5/125 (4%)

Query: 79  QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHG-EIPQEIGNLLRLEKLALPNN 137
           Q    + L++ +I  +     G  S ++Y++L  N        +   +   LE L L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 138 SFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGN 197
                +   +   + L    + +NKL   +  E  S   +  ++L  N L   +   +  
Sbjct: 180 FIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRF 235

Query: 198 LSALE 202
              LE
Sbjct: 236 SQNLE 240

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.1 bits (130), Expect = 5e-09
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 82  TELNLSSQRIGGILSP-YVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
             L+L    I  +       +   L ++NL  N  + ++  ++    +L+ L L +N  +
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA 204

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTR-QLPDFIGNLS 199
             +       + + +  + NNKL   I K +     L+   L  N      L DF     
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 200 ALE 202
            ++
Sbjct: 263 RVQ 265

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.8 bits (124), Expect = 3e-08
 Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 7/123 (5%)

Query: 79  QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNS 138
            R     ++   +   L+    +   ++ ++L+ N        ++    +LE L L +N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 139 FSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNL 198
              T+   L   S L    + NN +     +E+     ++TL    N ++R         
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSRGQGK 122

Query: 199 SAL 201
             +
Sbjct: 123 KNI 125

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             LNLSS  +       + +LS LR ++L +N       QE+     +E L   NN+ S 
Sbjct: 61  ELLNLSSNVLYET--LDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS- 112

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTR-QLPDFIGNLSA 200
            +  +          ++ NNK+      + G   ++Q L L  N +      +   +   
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 201 LE 202
           LE
Sbjct: 171 LE 172

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.5 bits (113), Expect = 9e-07
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 119 IPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQ 178
           I +   N  R +   + ++S    + +      N+    +  N L      ++    KL+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 179 TLALYYNYLTRQLPDFIGNLSALE 202
            L L  N L  +  D   +LS L 
Sbjct: 62  LLNLSSNVLY-ETLDL-ESLSTLR 83

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 100 GNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG 159
            N +  +   + D+     +     +   +++L L  N  S     +L+  + L   ++ 
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
           +N L      ++ SL  L+TL L  NY+       +    ++E
Sbjct: 67  SNVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIE 102

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.8 bits (130), Expect = 6e-09
 Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 10/121 (8%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
            EL+L+  ++  I    + +L+ L  ++LA+N      P  +  L +L +L L  N  S 
Sbjct: 224 DELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
             P  L+  + L    +  N+LE      I +L  L  L LY+N ++   P  + +L+ L
Sbjct: 280 ISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKL 333

Query: 202 E 202
           +
Sbjct: 334 Q 334

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.4 bits (129), Expect = 7e-09
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 8/121 (6%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
           T L L+  ++  I    + NL  L Y+ L  N      P  + +L +L++L   NN  S 
Sbjct: 290 TNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
              ++L+  +N+ +   G+N++    P  + +L ++  L L     T    ++  N+S  
Sbjct: 346 --VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP 401

Query: 202 E 202
            
Sbjct: 402 N 402

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 10/121 (8%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             L++SS ++  I    +  L+ L  +   +N      P  +G L  L++L+L  N    
Sbjct: 180 ERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD 235

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
                L+  +NL    + NN++    P  +  L KL  L L  N ++      +  L+AL
Sbjct: 236 --IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTAL 289

Query: 202 E 202
            
Sbjct: 290 T 290

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 10/122 (8%)

Query: 81  VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
             +  L    +         +L  +  +     G   +    +  L  L ++   NN  +
Sbjct: 26  KMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLT 81

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSA 200
              P  L   + L+   + NN++    P  + +L  L  L L+ N +T    D + NL+ 
Sbjct: 82  DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD--IDPLKNLTN 135

Query: 201 LE 202
           L 
Sbjct: 136 LN 137

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 11/121 (9%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
           T L L + +I  I    + NL+ L  + L+ N         +  L  L++L+  N     
Sbjct: 115 TGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQV--- 167

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
           T    L+  + L    + +NK+       +  L  L++L    N ++   P  +G L+ L
Sbjct: 168 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNL 223

Query: 202 E 202
           +
Sbjct: 224 D 224

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 8/102 (7%)

Query: 101 NLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGN 160
            L+      L        + Q   +L ++  L              +   +NL   +  N
Sbjct: 22  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSN 77

Query: 161 NKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
           N+L    P  + +L KL  + +  N +       + NL+ L 
Sbjct: 78  NQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 115

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 15/107 (14%), Positives = 36/107 (33%), Gaps = 6/107 (5%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             L   + ++  +    + NL+ + +++   N      P  + NL R+ +L L + +++ 
Sbjct: 334 QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT 188
                 +  S           L    P  I          + +N  +
Sbjct: 390 APVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPS 434

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.8 bits (129), Expect = 6e-09
 Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 16/123 (13%)

Query: 79  QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNS 138
            + +EL L+   +   L   +     +  + +  N     +P+   +   LE L   +N 
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLPPQ--ITVLEITQNALI-SLPELPAS---LEYLDACDNR 111

Query: 139 FSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNL 198
            S T+P   +   +L    V NN+L   +P+       L+ +    N LT  LP+   +L
Sbjct: 112 LS-TLPELPASLKHL---DVDNNQLT-MLPELPAL---LEYINADNNQLT-MLPELPTSL 162

Query: 199 SAL 201
             L
Sbjct: 163 EVL 165

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.1 bits (122), Expect = 6e-08
 Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 14/125 (11%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             +N  + ++  +        + L  +++ +N     +P+   +L   E L +  N    
Sbjct: 143 EYINADNNQLTMLPE----LPTSLEVLSVRNNQL-TFLPELPESL---EALDVSTNLLE- 193

Query: 142 TIPTNLSRCSNL----IYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGN 197
           ++P    R  +     I+F    N++   IP+ I SL    T+ L  N L+ ++ + +  
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 198 LSALE 202
            +A  
Sbjct: 253 QTAQP 257

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 11/107 (10%)

Query: 102 LSFLRYINLADNGFHG---EIPQEIGNLL-RLEKLALPNNSFSGTIPTNLSRC--SNLIY 155
           L      +L+ N F+        +  +   + EK ALP  +      + L  C  +    
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENR-NEAVSLLKECLINQFSE 63

Query: 156 FHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
             +    L   +P  +    ++  L +  N L   LP+   +L  L+
Sbjct: 64  LQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPASLEYLD 106

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 13/116 (11%), Positives = 34/116 (29%), Gaps = 10/116 (8%)

Query: 79  QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEK----LAL 134
             +  L++ + ++  +          L  ++++ N     +P         E+       
Sbjct: 160 TSLEVLSVRNNQLTFLPE----LPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRC 214

Query: 135 PNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQ 190
             N  +  IP N+          + +N L  +I + +              Y +  
Sbjct: 215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMS 269

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 81  VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
           +T + L++  +  +    +     ++ + + +       P  I  L  LE+L +     +
Sbjct: 46  LTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVT 101

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSA 200
                NLS  ++L    + ++  +  I  +I +L K+ ++ L YN     +   +  L  
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPE 160

Query: 201 LE 202
           L+
Sbjct: 161 LK 162

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 16/121 (13%), Positives = 44/121 (36%), Gaps = 5/121 (4%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
            +L +++          +  LS L  + +       +    +  L  L  L + +++   
Sbjct: 69  KDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
           +I T ++    +    +  N     I   + +L +L++L + ++ +       I +   L
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKL 183

Query: 202 E 202
            
Sbjct: 184 N 184

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 13/121 (10%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             +   + ++  +  P + NL FL  I   +N    ++P    +L   E +   NN    
Sbjct: 176 EFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLK-KLPDLPLSL---ESIVAGNNIL-- 227

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
                L     L   +  NN L+  +P    SL   + L +  NYLT  LP+   +L+ L
Sbjct: 228 EELPELQNLPFLTTIYADNNLLK-TLPDLPPSL---EALNVRDNYLT-DLPELPQSLTFL 282

Query: 202 E 202
           +
Sbjct: 283 D 283

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 27/138 (19%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             L +S+ ++  +  P + N SFL+ I++ +N    ++P    +L   E +A  NN    
Sbjct: 134 EYLGVSNNQLEKL--PELQNSSFLKIIDVDNNSLK-KLPDLPPSL---EFIAAGNNQLE- 186

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEG------------------QIPKEIGSLLKLQTLALY 183
            +P  L     L   +  NN L+                   +   E+ +L  L T+   
Sbjct: 187 ELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 245

Query: 184 YNYLTRQLPDFIGNLSAL 201
            N L   LPD   +L AL
Sbjct: 246 NNLLK-TLPDLPPSLEAL 262

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 23/135 (17%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQ---------------EIGNL 126
             L  S   +   L     +L  L   N          P                E+ N 
Sbjct: 94  ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNS 152

Query: 127 LRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNY 186
             L+ + + NNS    +P       +L +   GNN+LE ++P E+ +L  L  +    N 
Sbjct: 153 SFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNS 206

Query: 187 LTRQLPDFIGNLSAL 201
           L  +LPD   +L ++
Sbjct: 207 LK-KLPDLPLSLESI 220

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 24/151 (15%), Positives = 44/151 (29%), Gaps = 34/151 (22%)

Query: 79  QRVTELNLSSQRIGGILSPYVGNLSF-------------LRYINLADNGFHGEIPQEIGN 125
           +  TE   +         P  G                    + L + G    +P+   +
Sbjct: 34  KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPH 92

Query: 126 LLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPK---------------E 170
              LE L    NS +  +P       +L+  +     L    P                E
Sbjct: 93  ---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE 148

Query: 171 IGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
           + +   L+ + +  N L + LPD   +L  +
Sbjct: 149 LQNSSFLKIIDVDNNSLKK-LPDLPPSLEFI 178

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 19/121 (15%)

Query: 95  LSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLS------ 148
           ++P   + +FL+      +    E+P E  N+    +     + +    P          
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 149 -------RCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
                           + N  L   +P+       L++L    N LT +LP+   +L +L
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSL 116

Query: 202 E 202
            
Sbjct: 117 L 117

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 21/133 (15%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             +   +  +  +  P + NL FL  I   +N     +P    +L   E L + +N  + 
Sbjct: 218 ESIVAGNNILEEL--PELQNLPFLTTIYADNNLLK-TLPDLPPSL---EALNVRDNYLT- 270

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEG-------------QIPKEIGSLLKLQTLALYYNYLT 188
            +P      + L       + L               +I         L+ L +  N L 
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI 330

Query: 189 RQLPDFIGNLSAL 201
            +LP     L  L
Sbjct: 331 -ELPALPPRLERL 342

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 23/133 (17%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
           T +   +  +  +          L  +N+ DN    ++P+   +L  L+      +  S 
Sbjct: 240 TTIYADNNLLKTLPD----LPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSE 294

Query: 142 TIPT----NLSRC---------SNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT 188
             P     N S            +L   +V NNKL  ++P       +L+ L   +N+L 
Sbjct: 295 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA 350

Query: 189 RQLPDFIGNLSAL 201
            ++P+   NL  L
Sbjct: 351 -EVPELPQNLKQL 362

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 18/120 (15%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             LN SS  I  +          L  +N+++N    E+P     L   E+L    N  + 
Sbjct: 300 YYLNASSNEIRSLC----DLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA- 350

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
            +P       NL   HV  N L  + P    S+  L+      ++L  ++P+   NL  L
Sbjct: 351 EVPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLRMN----SHLA-EVPELPQNLKQL 401

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.4 bits (123), Expect = 5e-08
 Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 20/121 (16%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
           +  +     +  + S        L  + +  N     +P     L   ++L++ +N  + 
Sbjct: 107 SIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPPGL---QELSVSDNQLA- 154

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
           ++P   S    L      NN+L   +P     L   Q L++  N L   LP     L  L
Sbjct: 155 SLPALPSELCKL---WAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSELYKL 206

Query: 202 E 202
            
Sbjct: 207 W 207

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.7 bits (121), Expect = 7e-08
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 17/120 (14%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
            +L   + ++  +        S L+ ++++DN     +P     L +L      NN  + 
Sbjct: 164 CKLWAYNNQLTSLPM----LPSGLQELSVSDNQLA-SLPTLPSELYKLWAY---NNRLT- 214

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
           ++P      S L    V  N+L   +P        L+ L +  N LT  LP     L +L
Sbjct: 215 SLPALP---SGLKELIVSGNRLT-SLPVLPSE---LKELMVSGNRLT-SLPMLPSGLLSL 266

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 12/98 (12%)

Query: 105 LRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLE 164
              +N+ ++G    +P  +     +  L +P+N+ + ++P        L    V  N+L 
Sbjct: 42  NAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPELRTL---EVSGNQLT 94

Query: 165 GQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
             +P     LL+L   +         LP     L  L 
Sbjct: 95  -SLPVLPPGLLELSIFSNPLT----HLPALPSGLCKLW 127

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 21/121 (17%), Positives = 50/121 (41%), Gaps = 13/121 (10%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
            +L   + R+  + +      S L+ + ++ N     +P     L   ++L +  N  + 
Sbjct: 204 YKLWAYNNRLTSLPA----LPSGLKELIVSGNRL-TSLPVLPSEL---KELMVSGNRLT- 254

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
           ++P   S    L+   V  N+L  ++P+ +  L    T+ L  N L+ +    +  +++ 
Sbjct: 255 SLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310

Query: 202 E 202
            
Sbjct: 311 P 311

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.3 bits (123), Expect = 5e-08
 Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 4/126 (3%)

Query: 81  VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSF 139
              L LS   I  + +     L  L+ + L        I +E   NL  L  L L ++  
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 140 SGTIPTNLSRCSNLIYFHVGNNKLEGQI--PKEIGSLLKLQTLALYYNYLTR-QLPDFIG 196
               P       +L    +    L   +       +L  L  L L  N +    L    G
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145

Query: 197 NLSALE 202
            L++L+
Sbjct: 146 KLNSLK 151

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 4/124 (3%)

Query: 82  TELNLSSQRIGGILSPYV-GNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
             L L SQ     +      NL  LR ++L  +  +   P     L  L +L L     S
Sbjct: 51  QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS 110

Query: 141 GTI--PTNLSRCSNLIYFHVGNNKLEG-QIPKEIGSLLKLQTLALYYNYLTRQLPDFIGN 197
             +           L    +  N++    +    G L  L+++    N +       +  
Sbjct: 111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170

Query: 198 LSAL 201
           L   
Sbjct: 171 LQGK 174

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 30/114 (26%), Positives = 43/114 (37%)

Query: 75  GHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLAL 134
           G     V  L+LS   +  + S     L  L+ +NLA N  +    +    L  L+ L L
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321

Query: 135 PNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT 188
             N       +N      + Y  +  N +     +    L KLQTL L  N LT
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 31/128 (24%), Positives = 46/128 (35%), Gaps = 8/128 (6%)

Query: 82  TELNLSSQRIGGILSPYV-GNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSF 139
             ++LS  R+  +   Y    +  L+ + L  N F      +       LE+L L  N  
Sbjct: 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463

Query: 140 SGTIPTNLSR-----CSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTR-QLPD 193
                T L        S+L   ++ +N L    P     L  L+ L+L  N LT     D
Sbjct: 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523

Query: 194 FIGNLSAL 201
              NL  L
Sbjct: 524 LPANLEIL 531

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 73  TCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHG-EIPQEIGNLLRLEK 131
           T  H    + ++ LS  ++  +             I+L++N     +I   +  +  L+ 
Sbjct: 375 TTIHFIPSIPDIFLSGNKLVTLPK----INLTANLIHLSENRLENLDILYFLLRVPHLQI 430

Query: 132 LALPNNSFSGTIPTNL-SRCSNLIYFHVGNNKLEGQIPKEI-----GSLLKLQTLALYYN 185
           L L  N FS        S   +L    +G N L+     E+       L  LQ L L +N
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

Query: 186 YLTRQLPDFIGNLSALE 202
           YL    P    +L+AL 
Sbjct: 491 YLNSLPPGVFSHLTALR 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 2/123 (1%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHG-EIPQEIGNLLRLEKLALPNNSFS 140
             L+LS   +  + S + G LS L+Y+NL  N +    +     NL  L+ L + N    
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 141 GTIPTN-LSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS 199
             I     +  ++L    +    L     + + S+  +  L L+ +     L  F   LS
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196

Query: 200 ALE 202
           ++ 
Sbjct: 197 SVR 199

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 2/129 (1%)

Query: 76  HRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALP 135
                +  L L S RI  I      +L  L +++L+DN          G L  L+ L L 
Sbjct: 47  RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106

Query: 136 NNSFSG-TIPTNLSRCSNLIYFHVGNNKLEGQIPKE-IGSLLKLQTLALYYNYLTRQLPD 193
            N +    + +     +NL    +GN +   +I +     L  L  L +    L      
Sbjct: 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166

Query: 194 FIGNLSALE 202
            + ++  + 
Sbjct: 167 SLKSIRDIH 175

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 2/124 (1%)

Query: 81  VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
           +  L+LS  +I  I    +   + L+ + L  +  +        +L  LE L L +N  S
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 141 GTIPTNLSRCSNLIYFHVGNNKL-EGQIPKEIGSLLKLQTLALYYNYLTRQLP-DFIGNL 198
               +     S+L Y ++  N      +     +L  LQTL +       ++       L
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147

Query: 199 SALE 202
           ++L 
Sbjct: 148 TSLN 151

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
           T L++S       +         +R++NL+  G    +   I     LE L + NN+   
Sbjct: 390 TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD- 444

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
           +    L     L   ++  NKL+  +P +      L  + +  N L          L++L
Sbjct: 445 SFSLFLP---RLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSL 499

Query: 202 E 202
           +
Sbjct: 500 Q 500

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 81  VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
           +  L++    +   LS     L  ++ I + ++           +L  LE L L  N   
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 141 GTIPTN---LSRCSNLIYFHVGNNKLE--GQIPKEIGSLLKLQTLALYYNYLTRQLPDFI 195
                N        +L    +  N L    +  + + +L  L +L +  N     +PD  
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC 406

Query: 196 GNLSALE 202
                + 
Sbjct: 407 QWPEKMR 413

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 12/121 (9%), Positives = 33/121 (27%), Gaps = 1/121 (0%)

Query: 82  TELNLSS-QRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
             L + + +    I       L+ L  + +          Q + ++  +  L L  +  +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSA 200
             +       S++ Y  + +  L       +        +       +    +    L  
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245

Query: 201 L 201
           L
Sbjct: 246 L 246

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 6/111 (5%)

Query: 79  QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNN 137
             +T L L    +      ++ N   L  ++L+ N    +I       + RLE+L + NN
Sbjct: 226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN 282

Query: 138 SFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT 188
                +         L    + +N L   + +      +L+ L L +N + 
Sbjct: 283 RLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 4/123 (3%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSFS 140
             +   +  +  + +  + +   +  +NL D     EI          ++KL +  N+  
Sbjct: 48  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR 106

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPKEI-GSLLKLQTLALYYNYLTRQLPDFIGNLS 199
              P        L    +  N L   +P+ I  +  KL TL++  N L R   D     +
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165

Query: 200 ALE 202
           +L+
Sbjct: 166 SLQ 168

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 13/121 (10%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
           T L++S+  +  I        + L+ + L+ N     +   +  +  L    +  N    
Sbjct: 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-- 198

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
              + L+    +      +N +   +       ++L  L L +N LT        N   L
Sbjct: 199 ---STLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTAWL-LNYPGL 250

Query: 202 E 202
            
Sbjct: 251 V 251

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 16/122 (13%), Positives = 42/122 (34%), Gaps = 4/122 (3%)

Query: 83  ELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSFSG 141
           ++++  Q            L+  + +   ++    ++P  +  +  ++E L L +     
Sbjct: 25  DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEE 83

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEI-GSLLKLQTLALYYNYLTRQLPDFIGNLSA 200
                 +    +   ++G N +   +P  +  ++  L  L L  N L+        N   
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142

Query: 201 LE 202
           L 
Sbjct: 143 LT 144

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 5/112 (4%)

Query: 78  HQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPN 136
              + +L +    I  +      N+  L  + L  N     +P+ I  N  +L  L++ N
Sbjct: 92  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSN 150

Query: 137 NSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT 188
           N+            ++L    + +N+L   +   +  +  L    + YN L+
Sbjct: 151 NNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 10/124 (8%)

Query: 79  QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNN 137
             +T L L    +  +      N   L  +++++N     I  +       L+ L L +N
Sbjct: 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSN 175

Query: 138 SFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGN 197
             +  +   LS   +L + +V  N L       +   + ++ L   +N +          
Sbjct: 176 RLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVE 227

Query: 198 LSAL 201
           L+ L
Sbjct: 228 LTIL 231

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 6/111 (5%)

Query: 79  QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNN 137
             +T L L    +      ++ N   L  ++L+ N    +I       + RLE+L + NN
Sbjct: 232 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN 288

Query: 138 SFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT 188
                +         L    + +N L   + +      +L+ L L +N + 
Sbjct: 289 RLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 4/126 (3%)

Query: 79  QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNN 137
                +   +  +  + +  + +   +  +NL D     EI          ++KL +  N
Sbjct: 51  NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFN 109

Query: 138 SFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEI-GSLLKLQTLALYYNYLTRQLPDFIG 196
           +     P        L    +  N L   +P+ I  +  KL TL++  N L R   D   
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168

Query: 197 NLSALE 202
             ++L+
Sbjct: 169 ATTSLQ 174

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 13/121 (10%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
           T L++S+  +  I        + L+ + L+ N     +   +  +  L    +  N    
Sbjct: 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-- 204

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
              + L+    +      +N +   +       ++L  L L +N LT        N   L
Sbjct: 205 ---STLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTAWL-LNYPGL 256

Query: 202 E 202
            
Sbjct: 257 V 257

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSFS 140
            +L +    I  +      N+  L  + L  N     +P+ I  N  +L  L++ NN+  
Sbjct: 102 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE 160

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT 188
                     ++L    + +N+L   +   +  +  L    + YN L+
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 16/122 (13%), Positives = 42/122 (34%), Gaps = 4/122 (3%)

Query: 83  ELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSFSG 141
           ++++  Q            L+  + +   ++    ++P  +  +  ++E L L +     
Sbjct: 31  DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEE 89

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEI-GSLLKLQTLALYYNYLTRQLPDFIGNLSA 200
                 +    +   ++G N +   +P  +  ++  L  L L  N L+        N   
Sbjct: 90  IDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148

Query: 201 LE 202
           L 
Sbjct: 149 LT 150

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 26/149 (17%), Positives = 43/149 (28%), Gaps = 8/149 (5%)

Query: 61  NNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIP 120
            +      W           +  L+++           V     L  ++L+DN   GE  
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 121 QEI----GNLLRLEKLALPNN---SFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGS 173
                       L+ LAL N    + SG      +    L    + +N L          
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 174 LL-KLQTLALYYNYLTRQLPDFIGNLSAL 201
              +L +L L +  L +        LS L
Sbjct: 251 WPSQLNSLNLSFTGLKQVPKGLPAKLSVL 279

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 9/134 (6%)

Query: 59  SWNNTINLCLWTGVTCGHRHQRVTELNLSS---QRIGGILSPYVGNLSFLRYINLADNGF 115
           S N  +         C  +   +  L L +   +   G+ S        L+ ++L+ N  
Sbjct: 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240

Query: 116 HGEIPQEIGNLL-RLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSL 174
                    +   +L  L L        +P  L   + L    +  N+L+   P     L
Sbjct: 241 RDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR-NPS-PDEL 295

Query: 175 LKLQTLALYYNYLT 188
            ++  L+L  N   
Sbjct: 296 PQVGNLSLKGNPFL 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 31/150 (20%), Positives = 49/150 (32%), Gaps = 17/150 (11%)

Query: 67  CLWTG--VTCGHRH---------QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGF 115
           C      V C  +               L+L   RI  +      +   L  + L +N  
Sbjct: 9   CSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV 68

Query: 116 HGEIPQEI-GNLLRLEKLALPNNSFSGTIPTN-LSRCSNLIYFHVGNNKLEGQIPKEI-G 172
              +      NL  L  L L +N     IP    +  SNL    +  NK+   +   +  
Sbjct: 69  S-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQ 125

Query: 173 SLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
            L  L++L +  N L          L++LE
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 2/122 (1%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSFS 140
             L +    +  I       L+ L  + L        IP E   +L  L  L L + + +
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN 189

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSA 200
                +  R   L    + +      +       L L +L++ +  LT      + +L  
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249

Query: 201 LE 202
           L 
Sbjct: 250 LR 251

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 2/125 (1%)

Query: 79  QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQE-IGNLLRLEKLALPNN 137
            R+  L +S       ++P       L  +++        +P   + +L+ L  L L  N
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN 258

Query: 138 SFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGN 197
             S    + L     L    +   +L    P     L  L+ L +  N LT        +
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318

Query: 198 LSALE 202
           +  LE
Sbjct: 319 VGNLE 323

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 6/125 (4%)

Query: 82  TELNLSSQRIGGILSPYV-GNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSF 139
             L+     +  +    V  +L  L Y++++           I   L  LE L +  NSF
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSF 162

Query: 140 SGTIPTN-LSRCSNLIYFHVGNNKLEGQIPKEI-GSLLKLQTLALYYNYLTRQLPDFIGN 197
                 +  +   NL +  +   +LE Q+      SL  LQ L + +N            
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221

Query: 198 LSALE 202
           L++L+
Sbjct: 222 LNSLQ 226

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 7/126 (5%)

Query: 82  TELNLSSQRI--GGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSF 139
           T+L+LSS  +   G  S      + L+Y++L+ NG    +      L +LE L   +++ 
Sbjct: 55  TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL 113

Query: 140 SGTIPTNL-SRCSNLIYFHVGNNKLEGQIPKEI-GSLLKLQTLALYYN-YLTRQLPDFIG 196
                 ++     NLIY  + +          I   L  L+ L +  N +    LPD   
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172

Query: 197 NLSALE 202
            L  L 
Sbjct: 173 ELRNLT 178

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 3/109 (2%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSFS 140
             L++S        +     LS L  + +A N F      +I   L  L  L L      
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

Query: 141 GTIPTNLSRC-SNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT 188
             +        S+L   ++ +N            L  LQ L    N++ 
Sbjct: 189 -QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 3/125 (2%)

Query: 80  RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNS 138
            +  L+LS   +   +S     L  L +++   +         +  +L  L  L + +  
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 139 FSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEI-GSLLKLQTLALYYNYLTRQLPDFIGN 197
                    +  S+L    +  N  +     +I   L  L  L L    L +  P    +
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 198 LSALE 202
           LS+L+
Sbjct: 198 LSSLQ 202

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 3/123 (2%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             + L   RI  + +        L  + L  N            L  LE+L L +N+   
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94

Query: 142 TIPTN-LSRCSNLIYFHVGNNKLEGQIPKEI-GSLLKLQTLALYYNYLTRQLPDFIGNLS 199
           ++          L   H+    L+ ++   +   L  LQ L L  N L     D   +L 
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 200 ALE 202
            L 
Sbjct: 154 NLT 156

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 4/123 (3%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSFS 140
             L+L    +  +       L+ L+Y+ L DN     +P +   +L  L  L L  N  S
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPKEI-GSLLKLQTLALYYNYLTRQLPDFIGNLS 199
                      +L    +  N++   +       L +L TL L+ N L+    + +  L 
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225

Query: 200 ALE 202
           AL+
Sbjct: 226 ALQ 228

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 4/123 (3%)

Query: 81  VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140
            T LN+S   I  + +  + +LS LR + ++ N               LE L L +N   
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEG-QIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS 199
                      NL +  +  N  +   I KE G++ +L+ L L   +L +     I +L+
Sbjct: 83  KISCHPTV---NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 200 ALE 202
             +
Sbjct: 140 ISK 142

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 4/103 (3%)

Query: 101 NLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG 159
            +  L+ ++++ N    +  +        L  L + +N  + TI   L     +    + 
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLH 429

Query: 160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
           +NK++  IPK++  L  LQ L +  N L          L++L+
Sbjct: 430 SNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 81  VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSF 139
           V  ++LS   I  +       L  L+++ +        I       L  L  L L  N F
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 140 SGTIPTN-LSRCSNLIYFHVGNNKL-EGQIPKEI-GSLLKLQTLALYYNYLTRQLPD-FI 195
              + T   +  +NL    +    L    +       L  L+ L L  N + +  P  F 
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 196 GNLSALE 202
            N+    
Sbjct: 151 LNMRRFH 157

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 32/156 (20%), Positives = 52/156 (33%), Gaps = 4/156 (2%)

Query: 49  QLHDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYI 108
            L +   + SS+ +T           G     V   +LS  +I  +L     + + L  +
Sbjct: 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL 304

Query: 109 NLADNGFHGEIPQEI-GNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQI 167
            LA N  + +I       L  L KL L  N               L    +  N +   +
Sbjct: 305 TLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-AL 362

Query: 168 PKEI-GSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
             +    L  L+ LAL  N L          L++L+
Sbjct: 363 GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 6/126 (4%)

Query: 82  TELNLSSQRIGGILSPYV-GNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSF 139
             L +  Q  G ++       LS L  + L  N F  ++       L  LE L L   + 
Sbjct: 57  QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNL 115

Query: 140 -SGTIPTNL-SRCSNLIYFHVGNNKLEGQIPKEI-GSLLKLQTLALYYNYLTRQLPDFIG 196
               +  N     ++L    + +N ++   P     ++ +   L L +N +     + + 
Sbjct: 116 DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175

Query: 197 NLSALE 202
           N     
Sbjct: 176 NFQGKH 181

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 3/122 (2%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSFS 140
            EL L +  I  I S     +  L  ++L +      I +     L  L+ L L   +  
Sbjct: 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209

Query: 141 GTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSA 200
             +P  L+    L    +  N      P     L  L+ L +  + ++    +    L++
Sbjct: 210 -DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267

Query: 201 LE 202
           L 
Sbjct: 268 LV 269

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSFS 140
             L L    +  I S     LS LR + L +N     IP      +  L +L L      
Sbjct: 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKL 184

Query: 141 GTIPTN-LSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS 199
             I         NL Y ++G   ++  +P  +  L+ L+ L +  N+     P     LS
Sbjct: 185 EYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242

Query: 200 ALE 202
           +L+
Sbjct: 243 SLK 245

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 4/105 (3%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             LNL    I  +  P +  L  L  + ++ N F    P     L  L+KL + N+  S 
Sbjct: 199 KYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEI-GSLLKLQTLALYYN 185
                    ++L+  ++ +N L   +P ++   L  L  L L++N
Sbjct: 257 IERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 101 NLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGN 160
            L  L+Y+NL       ++P  +  L+ LE+L +  N F    P +    S+L    V N
Sbjct: 194 GLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 161 NKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
           +++          L  L  L L +N L+    D    L  L 
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 37/166 (22%), Positives = 54/166 (32%), Gaps = 38/166 (22%)

Query: 72  VTCGHRH---------QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNG-------- 114
           V C  R               LNL    I  I +    +L  L  + L  N         
Sbjct: 59  VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA 118

Query: 115 FHG---------------EIPQEI-GNLLRLEKLALPNNSFSGTIPTN-LSRCSNLIYFH 157
           F+G                IP      L +L +L L NN    +IP+   +R  +L+   
Sbjct: 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLD 177

Query: 158 VGNNKLEGQIPKEI-GSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
           +G  K    I +     L  L+ L L    +   +P+    L  LE
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPNL-TPLVGLE 221

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 27/121 (22%), Positives = 41/121 (33%), Gaps = 4/121 (3%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             L L + +I  I       L  L+ + ++ N    EIP  +     L +L + +N    
Sbjct: 81  YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRK 137

Query: 142 TIPTNLSRCSNLIYFHVGNNKL-EGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSA 200
                 S   N+    +G N L            LKL  L +    LT    D    L+ 
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNE 197

Query: 201 L 201
           L
Sbjct: 198 L 198

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 80  RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNS 138
           ++  L +S  ++ GI          L  ++L  N     I  E      +L +L L +N 
Sbjct: 173 KLNYLRISEAKLTGIPK---DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQ 228

Query: 139 FSGTIPTN-LSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTR 189
               I    LS    L   H+ NNKL  ++P  +  L  LQ + L+ N +T+
Sbjct: 229 IR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK 278

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.0 bits (98), Expect = 6e-05
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 8/107 (7%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
           T+L L+  ++  I    + NL  L ++ L +N    ++   + +L +L+ L+L +N  S 
Sbjct: 68  TKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS- 122

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT 188
            I   L     L   ++GNNK+       +  L KL TL+L  N ++
Sbjct: 123 DI-NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS 166

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 6/111 (5%)

Query: 80  RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNS 138
           +++ + ++   I  I     G    L  ++L  N    ++       L  L KL L  NS
Sbjct: 172 KLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNS 227

Query: 139 FSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTR 189
            S     +L+   +L   H+ NNKL  ++P  +     +Q + L+ N ++ 
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
           TEL+L   +I  + +  +  L+ L  + L+ N         + N   L +L L NN    
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 253

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEG------QIPKEIGSLLKLQTLALYYNYLT 188
            +P  L+    +   ++ NN +          P           ++L+ N + 
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 14/132 (10%)

Query: 67  CLWTGVTCGHRH---------QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHG 117
           C    V C                  L+L + +I  I      NL  L  + L +N    
Sbjct: 31  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 118 EIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEI-GSLLK 176
             P     L++LE+L L  N     +P  + +   L    V  N++  ++ K +   L +
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK--TLQELRVHENEIT-KVRKSVFNGLNQ 146

Query: 177 LQTLALYYNYLT 188
           +  + L  N L 
Sbjct: 147 MIVVELGTNPLK 158

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.8 bits (98), Expect = 7e-05
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 81  VTELNLSSQRIGGILSPYV-GNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNS 138
              L+LS   +  + + +    L+ L  + L+ N  +  I  E    +  L  L L +N 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 139 FSGTIPTN-LSRCSNLIYFHVGNNKLEGQIPKEI-GSLLKLQTLALYYNYLTRQLPDFIG 196
              T+     S    L    + NN +   + +     + +LQ L L  N ++R   + I 
Sbjct: 100 LH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157

Query: 197 NLSALE 202
           + + L 
Sbjct: 158 DGNKLP 163

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.7 bits (98), Expect = 7e-05
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 2/102 (1%)

Query: 101 NLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGN 160
            LS LRY+NLA      EIP  +  L++L++L L  N  S   P +     +L    +  
Sbjct: 183 GLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240

Query: 161 NKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
           ++++        +L  L  + L +N LT    D    L  LE
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 16/149 (10%)

Query: 67  CLWTGVTCGHR---------HQRVTELNLSSQRIGGILSPYV-GNLSFLRYINLADNGFH 116
           C  T V C ++          Q   EL L++     + +  +   L  LR IN ++N   
Sbjct: 11  CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT 70

Query: 117 GEIPQEI-GNLLRLEKLALPNNSFSGTIPTNL-SRCSNLIYFHVGNNKLEGQIPKEI-GS 173
            +I +        + ++ L +N     +   +     +L    + +N++   +  +    
Sbjct: 71  -DIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIG 127

Query: 174 LLKLQTLALYYNYLTRQLPDFIGNLSALE 202
           L  ++ L+LY N +T   P     L +L 
Sbjct: 128 LSSVRLLSLYDNQITTVAPGAFDTLHSLS 156

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 28/114 (24%), Positives = 40/114 (35%), Gaps = 8/114 (7%)

Query: 80  RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIP--QEIGNLLRLEKLALPNN 137
           R  EL+L   +I  I       L     I+ +DN    EI        L RL+ L + NN
Sbjct: 20  RDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRLKTLLVNNN 74

Query: 138 SFSGTIPTNLSRCSNLIYFHVGNNKLEG-QIPKEIGSLLKLQTLALYYNYLTRQ 190
                         +L    + NN L        + SL  L  L +  N +T +
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 128

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 6/125 (4%)

Query: 81  VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSF 139
           +TE+ L    I  I          LR I+L++N    E+  +    L  L  L L  N  
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92

Query: 140 SGTIPTNL-SRCSNLIYFHVGNNKLEGQIPKEI-GSLLKLQTLALYYNYLTRQLPDFIGN 197
           +  +P +L     +L    +  NK+   +  +    L  L  L+LY N L          
Sbjct: 93  T-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 198 LSALE 202
           L A++
Sbjct: 151 LRAIQ 155

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 8/107 (7%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
           TEL LS   +  +    +  L  ++ ++L         P  +  L  L+ L L  N  + 
Sbjct: 88  TELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITN 143

Query: 142 TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT 188
              + L+  +NL Y  +GN ++    P  + +L KL TL    N ++
Sbjct: 144 I--SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
           T+LNL    +  +     G L  L  ++L+ N     +P     L  L  L +  N  + 
Sbjct: 58  TQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT- 113

Query: 142 TIPTNL-SRCSNLIYFHVGNNKLEGQIPKEI-GSLLKLQTLALYYNYLTRQLPDFIGNLS 199
           ++P         L   ++  N+L+  +P  +     KL+ L+L  N LT      +  L 
Sbjct: 114 SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172

Query: 200 ALE 202
            L+
Sbjct: 173 NLD 175

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 80  RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNS 138
            +  L+LS   +  + S +   LS L ++NL  N +       +  +L +L+ L + N  
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160

Query: 139 FSGTIPTN-LSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGN 197
               I     +  + L    +  + L+   PK + S+  +  L L+       L  F+  
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220

Query: 198 LSALE 202
            S++E
Sbjct: 221 TSSVE 225

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.0 bits (90), Expect = 6e-04
 Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 3/84 (3%)

Query: 118 EIPQEIGNLLRLEKLALPNNSFSGTIPTN-LSRCSNLIYFHVGNNKLEGQIPKEIGSLL- 175
           +    +     L +L + N      +    L     L    +  + L   +  +      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 176 KLQTLALYYNYLTRQLPDFIGNLS 199
           +L  L L +N L       +  LS
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLS 104

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 11/110 (10%)

Query: 79  QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNS 138
             +T L+  +  I  +    +  L+ L  +    N     +   +     L  LA  +N 
Sbjct: 42  ATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNI-TTLD--LSQNTNLTYLACDSNK 96

Query: 139 FSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT 188
            +     +++  + L Y +   NKL      ++     L  L    N LT
Sbjct: 97  LTN---LDVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT 140

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.8
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.79
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.79
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.78
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.77
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.77
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.76
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.76
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.76
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.75
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.75
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.75
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.74
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.73
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.71
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.7
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.7
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.69
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.69
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.69
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.69
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.69
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.68
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.68
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.68
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.68
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.67
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.67
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.67
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.67
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.67
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.67
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.67
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.66
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.66
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.66
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.66
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.64
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.64
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.64
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.63
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.63
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.63
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.61
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.6
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.6
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.59
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.59
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.59
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.59
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.58
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.58
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.57
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.56
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.56
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.54
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.54
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.54
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.54
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.53
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.53
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.52
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.52
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.51
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.51
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.5
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.5
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.5
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.46
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.45
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.44
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.43
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.43
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.41
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.4
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.37
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.37
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.35
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.35
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.35
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.31
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.28
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.26
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.14
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	99.06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.97
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.91
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.79
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.75
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.75
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.67
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.61
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.51
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.4
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.24
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.22
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.19
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.17
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.96
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.85
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.24
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.2
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.05
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.87
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.84
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.76
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.73
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.66
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.46
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.29

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.8e-30  Score=208.86  Aligned_cols=168  Identities=32%  Similarity=0.556  Sum_probs=155.0

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc--cccceeCCCC--CcEEEEEcCCCCCcc--ccCccccCCCCCcE
Q 035702           34 QTNETDRLALLTIKSQLHDPSGVTSSWNNTINLCL--WTGVTCGHRH--QRVTELNLSSQRIGG--ILSPYVGNLSFLRY  107 (202)
Q Consensus        34 ~~~~~~~~~L~~~~~~~~~~~~~~~~W~~~~~~c~--w~gv~c~~~~--~~v~~L~l~~~~l~~--~~~~~l~~l~~L~~  107 (202)
                      .|.++|++||++||.++.+|. .+.+|..+.++|.  |.||.|+...  ++|++|+++++.+.+  .+|+.+..+++|++
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~   80 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence            478999999999999998776 6789988889998  9999998654  789999999999999  89999999999999


Q ss_pred             EEccC-CcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccc
Q 035702          108 INLAD-NGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNY  186 (202)
Q Consensus       108 L~l~~-n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~  186 (202)
                      |++++ |.+.+.+|..++.+++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|+
T Consensus        81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  160 (313)
T 1ogq_A           81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence            99995 99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccChhccCCC-CCC
Q 035702          187 LTRQLPDFIGNLS-ALE  202 (202)
Q Consensus       187 l~g~iP~~~~~l~-~L~  202 (202)
                      ++|.+|..+++++ +|+
T Consensus       161 l~~~~p~~l~~l~~~L~  177 (313)
T 1ogq_A          161 ISGAIPDSYGSFSKLFT  177 (313)
T ss_dssp             CEEECCGGGGCCCTTCC
T ss_pred             ccCcCCHHHhhhhhcCc
Confidence            9999999998887 654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=8.6e-27  Score=203.66  Aligned_cols=162  Identities=24%  Similarity=0.327  Sum_probs=144.9

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCC-C-------CCCCCCCCCCcc---ccceeCCCCCcEEEEEcCCCCCccccCccccCCC
Q 035702           35 TNETDRLALLTIKSQLHDPSGV-T-------SSWNNTINLCLW---TGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLS  103 (202)
Q Consensus        35 ~~~~~~~~L~~~~~~~~~~~~~-~-------~~W~~~~~~c~w---~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~  103 (202)
                      ...+|+.||.++|.++.++.+. .       .+|+.++++|.|   +||+|+.. ++|+.|+|+++++.|.+|+.++.++
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~  105 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT  105 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence            3457999999999998755332 2       379999999999   99999865 8999999999999999999999999


Q ss_pred             CCcEEEccCCc---------------------------------------------------------------------
Q 035702          104 FLRYINLADNG---------------------------------------------------------------------  114 (202)
Q Consensus       104 ~L~~L~l~~n~---------------------------------------------------------------------  114 (202)
                      +|++|++++|.                                                                     
T Consensus       106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~  185 (636)
T 4eco_A          106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD  185 (636)
T ss_dssp             TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred             cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence            99999999883                                                                     


Q ss_pred             ---------CcccCchhccCCCCCCeEeCCCCcCccC-----------------cChhcc--CCCCCcEEEeecccCccc
Q 035702          115 ---------FHGEIPQEIGNLLRLEKLALPNNSFSGT-----------------IPTNLS--RCSNLIYFHVGNNKLEGQ  166 (202)
Q Consensus       115 ---------l~~~~p~~~~~l~~L~~L~ls~n~l~~~-----------------~p~~l~--~l~~L~~L~l~~n~~~g~  166 (202)
                               ++| +|+.++++++|++|++++|.+++.                 +|..++  ++++|++|++++|.+.|.
T Consensus       186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~  264 (636)
T 4eco_A          186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK  264 (636)
T ss_dssp             TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred             hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence                     445 788899999999999999999986                 999999  999999999999999999


Q ss_pred             CChhccCCCCCceeeccccc-ccc-ccChhccCC
Q 035702          167 IPKEIGSLLKLQTLALYYNY-LTR-QLPDFIGNL  198 (202)
Q Consensus       167 ~p~~~~~l~~L~~L~l~~N~-l~g-~iP~~~~~l  198 (202)
                      +|..+.++++|++|++++|+ ++| .+|..++++
T Consensus       265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L  298 (636)
T 4eco_A          265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQAL  298 (636)
T ss_dssp             CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHH
T ss_pred             ChHHHhcCCCCCEEECcCCCCCccccchHHHHhh
Confidence            99999999999999999998 998 899887665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.94  E-value=1.4e-26  Score=206.14  Aligned_cols=158  Identities=21%  Similarity=0.299  Sum_probs=106.2

Q ss_pred             cCCCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCccccceeCCCCCcEEEEEcCCCCCccc---cCcc----------
Q 035702           32 VGQTNETDRLALLTIKSQLHDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGI---LSPY----------   98 (202)
Q Consensus        32 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~W~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~---~~~~----------   98 (202)
                      +....++|+.||++||+++.+|. .+++|..+++||.|+||+|+  .++|+.|+++++.+.|.   +++.          
T Consensus         6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l   82 (768)
T 3rgz_A            6 PSQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL   82 (768)
T ss_dssp             --CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred             cccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccccc
Confidence            34457789999999999998887 88999988899999999998  38999999999999987   5554          


Q ss_pred             -------------ccCCCCCcEEEccCCcCcccCch--hccCCCCCCeEeCCCCcCccCcChhc-cCCCCCcEEEeeccc
Q 035702           99 -------------VGNLSFLRYINLADNGFHGEIPQ--EIGNLLRLEKLALPNNSFSGTIPTNL-SRCSNLIYFHVGNNK  162 (202)
Q Consensus        99 -------------l~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~ls~n~l~~~~p~~l-~~l~~L~~L~l~~n~  162 (202)
                                   +..+++|++|++++|.++|.+|.  .++.+++|++|++++|.+++..|..+ .++++|++|++++|.
T Consensus        83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  162 (768)
T 3rgz_A           83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS  162 (768)
T ss_dssp             ECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred             CCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence                         44555555555555555555555  55555555555555555555555443 455555555555555


Q ss_pred             CcccCChh---ccCCCCCceeeccccccccccC
Q 035702          163 LEGQIPKE---IGSLLKLQTLALYYNYLTRQLP  192 (202)
Q Consensus       163 ~~g~~p~~---~~~l~~L~~L~l~~N~l~g~iP  192 (202)
                      +++..|..   +.++++|++|++++|.+++.+|
T Consensus       163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  195 (768)
T 3rgz_A          163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVD  195 (768)
T ss_dssp             CEEETHHHHHHTTCCTTCCEEECCSSEEESCCB
T ss_pred             cCCcCChhhhhhccCCCCCEEECCCCcccccCC
Confidence            55544443   4555555555555555555444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=1e-25  Score=202.18  Aligned_cols=160  Identities=24%  Similarity=0.289  Sum_probs=140.6

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCCCCCCCCCC-----CC--Ccc------------ccceeCCCCCcEEEEEcCCCCCccc
Q 035702           34 QTNETDRLALLTIKSQLHDPSGVTSSWNNTI-----NL--CLW------------TGVTCGHRHQRVTELNLSSQRIGGI   94 (202)
Q Consensus        34 ~~~~~~~~~L~~~~~~~~~~~~~~~~W~~~~-----~~--c~w------------~gv~c~~~~~~v~~L~l~~~~l~~~   94 (202)
                      .+..+|+.||++||.++.+|     +|+.+.     ++  |.|            .||.|+. .++|+.|+|+++++.|.
T Consensus       265 ~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~  338 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGR  338 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEE
T ss_pred             ccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCc
Confidence            34568999999999999766     565443     45  999            9999986 38999999999999999


Q ss_pred             cCccccCCCCCcEEEc-cCCcCccc-------------------------------------------------------
Q 035702           95 LSPYVGNLSFLRYINL-ADNGFHGE-------------------------------------------------------  118 (202)
Q Consensus        95 ~~~~l~~l~~L~~L~l-~~n~l~~~-------------------------------------------------------  118 (202)
                      +|+.++.+++|++|++ ++|.++|.                                                       
T Consensus       339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~  418 (876)
T 4ecn_A          339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK  418 (876)
T ss_dssp             ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred             CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence            9999999999999999 77765444                                                       


Q ss_pred             ---------------------CchhccCCCCCCeEeCCCCcCcc-----------------CcChhcc--CCCCCcEEEe
Q 035702          119 ---------------------IPQEIGNLLRLEKLALPNNSFSG-----------------TIPTNLS--RCSNLIYFHV  158 (202)
Q Consensus       119 ---------------------~p~~~~~l~~L~~L~ls~n~l~~-----------------~~p~~l~--~l~~L~~L~l  158 (202)
                                           +|..++++++|++|++++|.+++                 .+|..++  ++++|++|++
T Consensus       419 ~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L  498 (876)
T 4ecn_A          419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL  498 (876)
T ss_dssp             CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred             cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence                                 78889999999999999999998                 3899988  9999999999


Q ss_pred             ecccCcccCChhccCCCCCceeeccccc-ccc-ccChhccCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNY-LTR-QLPDFIGNLS  199 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~-l~g-~iP~~~~~l~  199 (202)
                      ++|.+.+.+|..+.++++|+.|++++|+ ++| .+|..+++++
T Consensus       499 s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~  541 (876)
T 4ecn_A          499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA  541 (876)
T ss_dssp             ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH
T ss_pred             cCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhh
Confidence            9999999999999999999999999998 998 8888776544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=1.8e-24  Score=174.91  Aligned_cols=166  Identities=22%  Similarity=0.320  Sum_probs=132.8

Q ss_pred             CCCCHHHHHHHHHHHHhCC-CCCCCCCCC----CCCCCCCccccceeCC--------CCCcEEEEEcCCCCCccccCccc
Q 035702           33 GQTNETDRLALLTIKSQLH-DPSGVTSSW----NNTINLCLWTGVTCGH--------RHQRVTELNLSSQRIGGILSPYV   99 (202)
Q Consensus        33 ~~~~~~~~~~L~~~~~~~~-~~~~~~~~W----~~~~~~c~w~gv~c~~--------~~~~v~~L~l~~~~l~~~~~~~l   99 (202)
                      .....+|+.+|++||..+. ++.+....|    ....++|.|.|+.|..        ...+|+.|++++|.++. +|+.+
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~-lp~~l  100 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQA  100 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSS-CCSCG
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchh-cChhh
Confidence            3456688999999999874 666667789    4567899999999942        23678999999999884 78778


Q ss_pred             cCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccC------
Q 035702          100 GNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGS------  173 (202)
Q Consensus       100 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~------  173 (202)
                      ..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+.++++|++|++++|++.+.+|..+..      
T Consensus       101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~  178 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE  178 (328)
T ss_dssp             GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred             hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence            88999999999999988 88888888899999999999888 78888888888888888888777777766543      


Q ss_pred             ---CCCCceeeccccccccccChhccCCCCCC
Q 035702          174 ---LLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       174 ---l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                         +++|++|++++|.++ .+|..++++++|+
T Consensus       179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~  209 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLK  209 (328)
T ss_dssp             EEESTTCCEEEEEEECCC-CCCGGGGGCTTCC
T ss_pred             hccCCCCCEEECcCCCcC-cchHhhcCCCCCC
Confidence               777777777777777 7777777766654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.87  E-value=2.3e-21  Score=149.16  Aligned_cols=145  Identities=23%  Similarity=0.226  Sum_probs=124.9

Q ss_pred             CCCCCCCCCCCccccceeCCCC---------CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCC
Q 035702           57 TSSWNNTINLCLWTGVTCGHRH---------QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLL  127 (202)
Q Consensus        57 ~~~W~~~~~~c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~  127 (202)
                      ...|....+.|+|++|.|....         ..++.|++++|.+++..+..+..+++|++|++++|.++...+..+..++
T Consensus         9 ~~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~   88 (229)
T 3e6j_A            9 HSAACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT   88 (229)
T ss_dssp             --CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC
Confidence            3456667789999999997532         5689999999999998888899999999999999999855556678999


Q ss_pred             CCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          128 RLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       128 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      +|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+
T Consensus        89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  162 (229)
T 3e6j_A           89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT  162 (229)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence            9999999999999655566789999999999999999 8899999999999999999999965556788887764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=4.2e-20  Score=139.69  Aligned_cols=138  Identities=20%  Similarity=0.250  Sum_probs=116.3

Q ss_pred             CCCccccceeCCCC---------CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCC
Q 035702           65 NLCLWTGVTCGHRH---------QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALP  135 (202)
Q Consensus        65 ~~c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls  135 (202)
                      ..|.|+++.|....         .+++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus         5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A            5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            45899999997532         468999999999998666678899999999999999996656667899999999999


Q ss_pred             CCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          136 NNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       136 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      +|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+.++++|+
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~  151 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  151 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCcc
Confidence            9999955555678999999999999999965555688999999999999999966556678777764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=4.1e-20  Score=141.32  Aligned_cols=138  Identities=22%  Similarity=0.250  Sum_probs=120.4

Q ss_pred             CCCccccceeCCCC---------CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCC
Q 035702           65 NLCLWTGVTCGHRH---------QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALP  135 (202)
Q Consensus        65 ~~c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls  135 (202)
                      ..|.|..+.|....         ..++.|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus         9 C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B            9 CTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             SEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            45788888886432         468999999999999777789999999999999999998889999999999999999


Q ss_pred             CCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          136 NNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       136 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      +|.++...+..+.++++|++|++++|++++..|..+..+++|++|++++|++++..+..|..+++|+
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  155 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ  155 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC
Confidence            9999944334578999999999999999987788899999999999999999977667788887764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=7.5e-20  Score=139.88  Aligned_cols=138  Identities=20%  Similarity=0.238  Sum_probs=117.9

Q ss_pred             CCCccccceeCCCC---------CcEEEEEcCCCCCccccC-ccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeC
Q 035702           65 NLCLWTGVTCGHRH---------QRVTELNLSSQRIGGILS-PYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLAL  134 (202)
Q Consensus        65 ~~c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  134 (202)
                      ..|.|..+.|....         ..++.|++++|.+++..+ ..+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus         9 C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A            9 CRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            44678777775431         357889999999998655 34789999999999999999777778999999999999


Q ss_pred             CCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          135 PNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       135 s~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|.+++..+..+.++++|++|++++|++++..|..+..+++|++|++++|++++..|..|..+++|+
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  156 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS  156 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence            99999977677789999999999999999987788899999999999999999988788898888774

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=2.5e-19  Score=139.31  Aligned_cols=122  Identities=24%  Similarity=0.254  Sum_probs=62.9

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG  159 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~  159 (202)
                      +++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        60 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  139 (251)
T 3m19_A           60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN  139 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence            44455555555544444444455555555555555553333444555555555555555553333334555556666666


Q ss_pred             cccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702          160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      +|++++..+..+..+++|++|++++|++++..|..+.++++|
T Consensus       140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  181 (251)
T 3m19_A          140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL  181 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             CCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence            665553333345556666666666666654444455555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.80  E-value=2.6e-19  Score=134.08  Aligned_cols=128  Identities=23%  Similarity=0.284  Sum_probs=112.8

Q ss_pred             CCCccccceeCCCC---------CcEEEEEcCCCCCccccCc-cccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeC
Q 035702           65 NLCLWTGVTCGHRH---------QRVTELNLSSQRIGGILSP-YVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLAL  134 (202)
Q Consensus        65 ~~c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  134 (202)
                      ..|.|+.+.|....         ..++.|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus         6 C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A            6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            44778888886431         4789999999999986554 4889999999999999999888999999999999999


Q ss_pred             CCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccC
Q 035702          135 PNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP  192 (202)
Q Consensus       135 s~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP  192 (202)
                      ++|.+++..|..+.++++|++|++++|++++..|..+..+++|++|++++|.+++..+
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            9999997777779999999999999999998889999999999999999999987655

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.79  E-value=1.1e-18  Score=137.11  Aligned_cols=122  Identities=25%  Similarity=0.305  Sum_probs=77.0

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG  159 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~  159 (202)
                      .++.|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            46778888888777555567777788888888877774434445667777777777777764434445666666666666


Q ss_pred             cccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702          160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      +|.+++..+..+..+++|++|++++|.+++..+..|..+++|
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  159 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL  159 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence            666664444445556666666666666653333334444444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.79  E-value=3.4e-19  Score=158.64  Aligned_cols=77  Identities=30%  Similarity=0.489  Sum_probs=56.1

Q ss_pred             CCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          126 LLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       126 l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      +++|++|++++|.++|.+|..++++++|+.|++++|+++|.+|..++++++|+.||+++|+++|.+|..++++++|+
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~  707 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT  707 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence            34566677777777777777777777777777777777777777777777777777777777777777777776653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.78  E-value=1e-18  Score=128.84  Aligned_cols=128  Identities=20%  Similarity=0.226  Sum_probs=109.2

Q ss_pred             CCCccccceeCCCC---------CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCC
Q 035702           65 NLCLWTGVTCGHRH---------QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALP  135 (202)
Q Consensus        65 ~~c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls  135 (202)
                      ..|.|+++.|....         ..++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus         5 C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             CEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            45789999996432         578999999999998666678899999999999999996666668899999999999


Q ss_pred             CCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccC
Q 035702          136 NNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP  192 (202)
Q Consensus       136 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP  192 (202)
                      +|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            999996655667899999999999999995444456889999999999999997665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.77  E-value=3.6e-19  Score=142.85  Aligned_cols=121  Identities=26%  Similarity=0.486  Sum_probs=107.0

Q ss_pred             CcEEEEEcCC-CCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702           79 QRVTELNLSS-QRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH  157 (202)
Q Consensus        79 ~~v~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~  157 (202)
                      .+++.|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  155 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence            5788899995 888888888899999999999999999988998899999999999999999988898899999999999


Q ss_pred             eecccCcccCChhccCCC-CCceeeccccccccccChhccCCC
Q 035702          158 VGNNKLEGQIPKEIGSLL-KLQTLALYYNYLTRQLPDFIGNLS  199 (202)
Q Consensus       158 l~~n~~~g~~p~~~~~l~-~L~~L~l~~N~l~g~iP~~~~~l~  199 (202)
                      +++|.++|.+|..+..++ +|++|++++|.+++.+|..+..++
T Consensus       156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~  198 (313)
T 1ogq_A          156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN  198 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred             CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence            999999888888888887 889999999888888888777654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.77  E-value=1.1e-18  Score=141.04  Aligned_cols=122  Identities=21%  Similarity=0.235  Sum_probs=101.2

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.++ .+|..+..+++|++|++++|.++ .+|+.+..+++|++|++++|.+.+.+|..+.++++|++|++
T Consensus       183 ~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L  260 (328)
T 4fcg_A          183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL  260 (328)
T ss_dssp             TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred             CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence            45666777777776 46677778888888888888888 46667888888888888888888888888888899999999


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|.+.+.+|..+.++++|++|++++|++.+.+|..++++++|+
T Consensus       261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~  304 (328)
T 4fcg_A          261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC  304 (328)
T ss_dssp             TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred             CCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence            99888888888888899999999999988889999888888764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.76  E-value=3.4e-18  Score=147.83  Aligned_cols=124  Identities=22%  Similarity=0.218  Sum_probs=108.6

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      ..+++|+|++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            47899999999999977778999999999999999999777778999999999999999999544467899999999999


Q ss_pred             ecccCcccCChhccCCCCCceeecccccccc-ccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTR-QLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g-~iP~~~~~l~~L~  202 (202)
                      ++|++++..+..++++++|++|++++|.+++ .+|..++++++|+
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  176 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE  176 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence            9999996545568999999999999999974 4678888888764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.76  E-value=8.6e-18  Score=130.59  Aligned_cols=124  Identities=22%  Similarity=0.251  Sum_probs=99.7

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      ..++.|++++|++.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            46788888888888877777888888888888888888777777888888888888888888655566788888888888


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|++++..+..+..+++|++|++++|++++..|..|.++++|+
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  158 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ  158 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence            88888854445567888888888888888855555677777764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.76  E-value=1.3e-18  Score=124.85  Aligned_cols=122  Identities=24%  Similarity=0.365  Sum_probs=107.8

Q ss_pred             CcEEEEEcCCCCCc-cccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702           79 QRVTELNLSSQRIG-GILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH  157 (202)
Q Consensus        79 ~~v~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~  157 (202)
                      .+++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            56899999999998 77888889999999999999999965  6789999999999999999977888888899999999


Q ss_pred             eecccCccc-CChhccCCCCCceeeccccccccccC---hhccCCCCCC
Q 035702          158 VGNNKLEGQ-IPKEIGSLLKLQTLALYYNYLTRQLP---DFIGNLSALE  202 (202)
Q Consensus       158 l~~n~~~g~-~p~~~~~l~~L~~L~l~~N~l~g~iP---~~~~~l~~L~  202 (202)
                      +++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  143 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT  143 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence            999999952 34788999999999999999996555   4788888775

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.75  E-value=1.3e-17  Score=131.14  Aligned_cols=124  Identities=20%  Similarity=0.258  Sum_probs=98.5

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A           85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL  164 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence            57888888888888766666788888888888888888666666788888888888888888555556788888888888


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|++++..+..+..+++|++|++++|++++..|..+.++++|+
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (272)
T 3rfs_A          165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  208 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence            88888865555677888888888888888877666677777764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.75  E-value=3.8e-18  Score=142.74  Aligned_cols=137  Identities=20%  Similarity=0.240  Sum_probs=110.8

Q ss_pred             CCcccc--ceeCCCC--------CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccC-chhccCCCCCCeEeC
Q 035702           66 LCLWTG--VTCGHRH--------QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEI-PQEIGNLLRLEKLAL  134 (202)
Q Consensus        66 ~c~w~g--v~c~~~~--------~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l  134 (202)
                      .|.|.+  +.|....        .++++|++++|.+++..|..+..+++|++|++++|.+.+.+ +..+..+++|++|++
T Consensus         7 ~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A            7 ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL   86 (455)
T ss_dssp             CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred             eeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence            455554  6665432        56899999999999877888999999999999999887665 456888999999999


Q ss_pred             CCCcCccCcChhccCCCCCcEEEeecccCcccCChh--ccCCCCCceeeccccccccccChh-ccCCCCCC
Q 035702          135 PNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKE--IGSLLKLQTLALYYNYLTRQLPDF-IGNLSALE  202 (202)
Q Consensus       135 s~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~--~~~l~~L~~L~l~~N~l~g~iP~~-~~~l~~L~  202 (202)
                      ++|.+++..|..+.++++|++|++++|.+++.+|..  +..+++|++|++++|.+++..|.. +.++++|+
T Consensus        87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  157 (455)
T 3v47_A           87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH  157 (455)
T ss_dssp             TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred             CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence            999998777888889999999999999988755554  788889999999999988777765 67777764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.75  E-value=2.7e-18  Score=146.82  Aligned_cols=135  Identities=22%  Similarity=0.215  Sum_probs=97.3

Q ss_pred             CCccccceeCCC-----------CCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeC
Q 035702           66 LCLWTGVTCGHR-----------HQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLAL  134 (202)
Q Consensus        66 ~c~w~gv~c~~~-----------~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  134 (202)
                      .|.|.|+ |+..           ..++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence            4777776 6422           146788888888888877777888888888888888888777777888888888888


Q ss_pred             CCCcCccCcChhccCCCCCcEEEeecccCcc-cCChhccCCCCCceeeccccccccccC-hhccCCCCC
Q 035702          135 PNNSFSGTIPTNLSRCSNLIYFHVGNNKLEG-QIPKEIGSLLKLQTLALYYNYLTRQLP-DFIGNLSAL  201 (202)
Q Consensus       135 s~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g-~~p~~~~~l~~L~~L~l~~N~l~g~iP-~~~~~l~~L  201 (202)
                      ++|.+++..|..++++++|++|++++|.+++ .+|..+.++++|++|++++|.+.+.+| ..+.++++|
T Consensus        82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L  150 (549)
T 2z81_A           82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL  150 (549)
T ss_dssp             TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred             CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccccc
Confidence            8888886555567788888888888887775 345566777777777777776444554 455555544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.74  E-value=1.1e-17  Score=144.73  Aligned_cols=124  Identities=23%  Similarity=0.301  Sum_probs=100.5

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..++++++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            56888888888888877777888888888888888888777777888888888888888888666888888888888888


Q ss_pred             ecccCcccCChhccCCCCCceeecccccccc-ccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTR-QLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g-~iP~~~~~l~~L~  202 (202)
                      ++|.+++..|..++++++|++|++++|.+++ .+|..++++++|+
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~  156 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV  156 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC
Confidence            8888875555678888888888888888875 5688888877764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.74  E-value=1.2e-17  Score=124.95  Aligned_cols=118  Identities=24%  Similarity=0.324  Sum_probs=105.4

Q ss_pred             EEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCch-hccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeec
Q 035702           82 TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQ-EIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGN  160 (202)
Q Consensus        82 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~  160 (202)
                      +.+++++++++. +|..+..  ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus        11 ~~l~~s~~~l~~-ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCc-CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            578999999966 6765543  899999999999966554 488999999999999999988899999999999999999


Q ss_pred             ccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          161 NKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       161 n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      |++++..|..+..+++|++|++++|++++.+|..+..+++|+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  129 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence            999987777899999999999999999999999999888775

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.74  E-value=6.2e-18  Score=137.49  Aligned_cols=121  Identities=24%  Similarity=0.251  Sum_probs=74.1

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcCh-hccCCCCCcEEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPT-NLSRCSNLIYFH  157 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~L~~L~  157 (202)
                      .++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ +|. .+.++++|++|+
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEE
Confidence            356777777777776544466677777777777777765556666666777777777776663 343 356666666666


Q ss_pred             eecccCcccCCh--hccCCCCCceeeccccc-cccccChhccCCCCC
Q 035702          158 VGNNKLEGQIPK--EIGSLLKLQTLALYYNY-LTRQLPDFIGNLSAL  201 (202)
Q Consensus       158 l~~n~~~g~~p~--~~~~l~~L~~L~l~~N~-l~g~iP~~~~~l~~L  201 (202)
                      +++|+++ .+|.  .+.++++|++|++++|+ +++..|..+.++++|
T Consensus       131 L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  176 (353)
T 2z80_A          131 LLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL  176 (353)
T ss_dssp             CTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred             CCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC
Confidence            6666666 3443  45566666666666653 443334455554443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.74  E-value=1.9e-17  Score=124.02  Aligned_cols=123  Identities=24%  Similarity=0.279  Sum_probs=103.4

Q ss_pred             CCccccceeCCC---------CCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCC
Q 035702           66 LCLWTGVTCGHR---------HQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPN  136 (202)
Q Consensus        66 ~c~w~gv~c~~~---------~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~  136 (202)
                      .|.|..+.|...         ...++.|++++|.++. +|..+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus         9 ~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A            9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            456666667532         1578999999999985 778899999999999999999977777899999999999999


Q ss_pred             CcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeecccccccc
Q 035702          137 NSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTR  189 (202)
Q Consensus       137 n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g  189 (202)
                      |.+++..|..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            99997777789999999999999999995444468889999999999998863

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.74  E-value=6.9e-18  Score=123.32  Aligned_cols=120  Identities=23%  Similarity=0.328  Sum_probs=74.5

Q ss_pred             CcEEEEEcCCCCCc-cccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702           79 QRVTELNLSSQRIG-GILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH  157 (202)
Q Consensus        79 ~~v~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~  157 (202)
                      .+++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            44666666666666 45566566666666666666666643  4566666666666666666655566555566666666


Q ss_pred             eecccCcccCC--hhccCCCCCceeeccccccccccC---hhccCCCCC
Q 035702          158 VGNNKLEGQIP--KEIGSLLKLQTLALYYNYLTRQLP---DFIGNLSAL  201 (202)
Q Consensus       158 l~~n~~~g~~p--~~~~~l~~L~~L~l~~N~l~g~iP---~~~~~l~~L  201 (202)
                      +++|.+++ +|  ..+..+++|++|++++|.+++..+   ..+..+++|
T Consensus       102 Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  149 (168)
T 2ell_A          102 LSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL  149 (168)
T ss_dssp             CBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred             ccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence            66666663 33  456666666666666666663333   255555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.73  E-value=1.8e-17  Score=139.08  Aligned_cols=123  Identities=20%  Similarity=0.132  Sum_probs=97.6

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      ..++.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            57899999999999988888999999999999999999888888999999999999999999555566888999999999


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccCh-hccCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPD-FIGNLSAL  201 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~-~~~~l~~L  201 (202)
                      ++|++++..+..+.++++|++|++++|+..+.+|. .|.++++|
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L  198 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL  198 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence            99999854444566677777777766433334443 35555544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.73  E-value=4.2e-17  Score=128.77  Aligned_cols=124  Identities=23%  Similarity=0.242  Sum_probs=76.3

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCc-CcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNG-FHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH  157 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~  157 (202)
                      .+++.|++++|.+++..+..+..+++|++|++++|. ++...|..+..+++|++|++++|.+++..|..+.++++|++|+
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  135 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY  135 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence            456666666666666555556666666666666665 5544455566666666666666666655555666666677777


Q ss_pred             eecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      +++|++++..+..+..+++|++|++++|++++..+..+.++++|+
T Consensus       136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  180 (285)
T 1ozn_A          136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD  180 (285)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence            776666644444466666777777777776644444466555553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=2.8e-17  Score=134.24  Aligned_cols=129  Identities=19%  Similarity=0.191  Sum_probs=95.0

Q ss_pred             CCCccccceeCCCC---------CcEEEEEcCCCCCccccCcccc-CCCCCcEEEccCCcCcccCchhccCCCCCCeEeC
Q 035702           65 NLCLWTGVTCGHRH---------QRVTELNLSSQRIGGILSPYVG-NLSFLRYINLADNGFHGEIPQEIGNLLRLEKLAL  134 (202)
Q Consensus        65 ~~c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  134 (202)
                      ..|.+..+.|....         ..++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|++
T Consensus        16 C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           16 CLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             CEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            33566666665321         3467888888888886666666 7888888888888888666667888888888888


Q ss_pred             CCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChh
Q 035702          135 PNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDF  194 (202)
Q Consensus       135 s~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~  194 (202)
                      ++|.+++..+..+.++++|++|+|++|++++..|..+..+++|++|++++|.++ .+|..
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~  154 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVE  154 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGG
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHH
Confidence            888887554556778888888888888887666677778888888888888887 45544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.72  E-value=3.1e-17  Score=138.19  Aligned_cols=124  Identities=22%  Similarity=0.226  Sum_probs=93.0

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      ..++.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+..+.++++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            46778888888888866777888888888888888888777777888888888888888887433345677788888888


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|.+++..|..+..+++|++|++++|.+++..|..|.++++|+
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  155 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE  155 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence            88877766666777777777777777777766666666666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=3e-17  Score=125.34  Aligned_cols=114  Identities=19%  Similarity=0.182  Sum_probs=105.7

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++
T Consensus        57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  136 (220)
T 2v70_A           57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL  136 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred             CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence            67999999999999977778999999999999999999777878999999999999999999877899999999999999


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP  192 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP  192 (202)
                      ++|++++..|..+..+++|++|++++|.+++..+
T Consensus       137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          137 YDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            9999998778899999999999999999986544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.72  E-value=5.1e-17  Score=127.68  Aligned_cols=122  Identities=21%  Similarity=0.219  Sum_probs=60.0

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG  159 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~  159 (202)
                      .++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            35555555555555433345555555555555555554444445555555555555555554333444555555555555


Q ss_pred             cccCcccCChhccCCCCCceeecccccccc-ccChhccCCCCC
Q 035702          160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTR-QLPDFIGNLSAL  201 (202)
Q Consensus       160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g-~iP~~~~~l~~L  201 (202)
                      +|.+++..+..+..+++|++|++++|.+++ .+|..+.++++|
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L  151 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL  151 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC
Confidence            555543322234444555555555555443 234444444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.71  E-value=1.9e-17  Score=131.87  Aligned_cols=136  Identities=21%  Similarity=0.204  Sum_probs=83.3

Q ss_pred             CCCccccceeCCCC---------CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcc--cCchhccCCCCCCeEe
Q 035702           65 NLCLWTGVTCGHRH---------QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHG--EIPQEIGNLLRLEKLA  133 (202)
Q Consensus        65 ~~c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~  133 (202)
                      ..|.|+++.|....         ..+++|++++|.++...+..+..+++|++|++++|.++.  ..+..+..+++|++|+
T Consensus         5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A            5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred             CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence            45889999997532         478999999999987444457888999999999988872  2244555566666666


Q ss_pred             CCCCcCccCcChhccCCCCCcEEEeecccCcccCC-hhccCCCCCceeeccccccccccChhccCCCCC
Q 035702          134 LPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIP-KEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       134 ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p-~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      +++|.++ .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|..+.++++|
T Consensus        85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  152 (306)
T 2z66_A           85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL  152 (306)
T ss_dssp             CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred             CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC
Confidence            6666655 445445555555555555555543222 234444555555555555544444444444433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.70  E-value=6.5e-17  Score=135.25  Aligned_cols=122  Identities=21%  Similarity=0.206  Sum_probs=78.9

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG  159 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~  159 (202)
                      .++.+++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+.++++|++|+++
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  355 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS  355 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence            46666666666666666666666667777776666666556666666666666666666665555666666666666666


Q ss_pred             cccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702          160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      +|++++..|..+..+++|++|++++|++++..+..+..+++|
T Consensus       356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  397 (455)
T 3v47_A          356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL  397 (455)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence            666665556666666666666666666664433445555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.70  E-value=1.5e-16  Score=124.97  Aligned_cols=122  Identities=22%  Similarity=0.320  Sum_probs=108.1

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.+.+ + +.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus        63 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  140 (272)
T 3rfs_A           63 PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL  140 (272)
T ss_dssp             TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence            679999999999988 3 47899999999999999999777777899999999999999999666667899999999999


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|.+++..+..+..+++|++|++++|++++..|..++++++|+
T Consensus       141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  184 (272)
T 3rfs_A          141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK  184 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence            99999966666678999999999999999977777778888775

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.70  E-value=1.8e-16  Score=125.15  Aligned_cols=124  Identities=19%  Similarity=0.236  Sum_probs=92.9

Q ss_pred             CcEEEEEcCCCC-CccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702           79 QRVTELNLSSQR-IGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH  157 (202)
Q Consensus        79 ~~v~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~  157 (202)
                      .+++.|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus        80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  159 (285)
T 1ozn_A           80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF  159 (285)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence            567788888886 6665566777788888888888888766677777788888888888888754445577788888888


Q ss_pred             eecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      +++|++++..+..+..+++|++|++++|.+++..|..+.++++|+
T Consensus       160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  204 (285)
T 1ozn_A          160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM  204 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence            888888754444577778888888888888877777777777664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.69  E-value=3.3e-16  Score=117.26  Aligned_cols=117  Identities=24%  Similarity=0.277  Sum_probs=102.4

Q ss_pred             EEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecc
Q 035702           82 TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNN  161 (202)
Q Consensus        82 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n  161 (202)
                      +.+++++++++. +|..+.  ++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+.++++|++|++++|
T Consensus        13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            468999999986 666553  68999999999998 88889999999999999999999777788999999999999999


Q ss_pred             cCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          162 KLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       162 ~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      .+++..|..+..+++|++|++++|.+++..+..|..+++|+
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  129 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS  129 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcccc
Confidence            99977677899999999999999999955555687787764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.69  E-value=9.4e-17  Score=144.26  Aligned_cols=134  Identities=21%  Similarity=0.164  Sum_probs=100.4

Q ss_pred             CccccceeCCCCCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccC-chhccCCCCCCeEeCCCCcCccCcCh
Q 035702           67 CLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEI-PQEIGNLLRLEKLALPNNSFSGTIPT  145 (202)
Q Consensus        67 c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~ls~n~l~~~~p~  145 (202)
                      |.|+.|.+  ...+++.|++++|.+++..+..+..+++|++|++++|...+.+ |..|.++++|++|++++|.+++..|.
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            45666666  2267888888888888877777888888888888888655555 66777888888888888888766677


Q ss_pred             hccCCCCCcEEEeecccCcccCChh--ccCCCCCceeeccccccccccC-hhccCCCCCC
Q 035702          146 NLSRCSNLIYFHVGNNKLEGQIPKE--IGSLLKLQTLALYYNYLTRQLP-DFIGNLSALE  202 (202)
Q Consensus       146 ~l~~l~~L~~L~l~~n~~~g~~p~~--~~~l~~L~~L~l~~N~l~g~iP-~~~~~l~~L~  202 (202)
                      .+.++++|++|++++|.+++.+|..  +.++++|++|++++|.+++..| ..|+++++|+
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~  151 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK  151 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence            7888888888888888887666654  7777888888888888775544 4677777664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=2.2e-17  Score=146.22  Aligned_cols=99  Identities=27%  Similarity=0.413  Sum_probs=47.1

Q ss_pred             ccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCc
Q 035702           99 VGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQ  178 (202)
Q Consensus        99 l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~  178 (202)
                      +..++.|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..++.+++|+
T Consensus       220 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~  296 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK  296 (727)
T ss_dssp             --CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred             hccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence            444444555555555444 44444444445555555555544 44444444555555555555544 4444444444555


Q ss_pred             eeeccccccccccChhccCCCCC
Q 035702          179 TLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       179 ~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      +|+|++|.++ .+|..|+++++|
T Consensus       297 ~L~L~~N~l~-~lp~~~~~l~~L  318 (727)
T 4b8c_D          297 YFYFFDNMVT-TLPWEFGNLCNL  318 (727)
T ss_dssp             EEECCSSCCC-CCCSSTTSCTTC
T ss_pred             EEECCCCCCC-ccChhhhcCCCc
Confidence            5555555444 444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.69  E-value=6.4e-17  Score=140.21  Aligned_cols=146  Identities=14%  Similarity=0.088  Sum_probs=83.0

Q ss_pred             CCCCCCCCCCCCc----cccceeCC------C----------CCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcC
Q 035702           56 VTSSWNNTINLCL----WTGVTCGH------R----------HQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGF  115 (202)
Q Consensus        56 ~~~~W~~~~~~c~----w~gv~c~~------~----------~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l  115 (202)
                      ....|.+..+||.    |.++.|+.      .          ...++.++++++.+....+..+..+++|++|++++|.+
T Consensus         8 ~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l   87 (597)
T 3oja_B            8 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI   87 (597)
T ss_dssp             ---CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC
T ss_pred             cccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC
Confidence            4567877766663    55544431      0          02345566666666553333455566666666666666


Q ss_pred             cccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhc
Q 035702          116 HGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFI  195 (202)
Q Consensus       116 ~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~  195 (202)
                      ++..|..|+.+++|++|++++|.+++..|..++++++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|
T Consensus        88 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  167 (597)
T 3oja_B           88 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF  167 (597)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred             CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh
Confidence            65555566666666666666666665555555666666666666666663222234566666666666666665555556


Q ss_pred             cCCCCC
Q 035702          196 GNLSAL  201 (202)
Q Consensus       196 ~~l~~L  201 (202)
                      +++++|
T Consensus       168 ~~l~~L  173 (597)
T 3oja_B          168 QATTSL  173 (597)
T ss_dssp             TTCTTC
T ss_pred             hcCCcC
Confidence            655555

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.69  E-value=3.1e-16  Score=123.03  Aligned_cols=123  Identities=20%  Similarity=0.227  Sum_probs=71.6

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      ..++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  164 (270)
T 2o6q_A           85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL  164 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence            34555566665555544444555666666666666666444455566666666666666666333334566666666666


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      ++|.+++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  207 (270)
T 2o6q_A          165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL  207 (270)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             cCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence            6666664433446666667777777776664433445555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.69  E-value=1.1e-16  Score=140.14  Aligned_cols=123  Identities=22%  Similarity=0.231  Sum_probs=99.2

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcCh-hccCCCCCcEEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPT-NLSRCSNLIYFH  157 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~L~~L~  157 (202)
                      .+++.|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|++++|.++ .+|. .++++++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEE
Confidence            56888888888888866667888888888888888888777888888888888888888888 4454 588888888888


Q ss_pred             eecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      +++|++++..|..+.++++|++|++++|.+++..|..++++++|+
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  148 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ  148 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCC
Confidence            888888755556788888888888888888877777777777764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.69  E-value=1.5e-16  Score=126.77  Aligned_cols=123  Identities=20%  Similarity=0.220  Sum_probs=93.3

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcc-cCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHG-EIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH  157 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~  157 (202)
                      .+++.|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus       126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  205 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  205 (306)
T ss_dssp             TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence            467777777777777666667777788888888887775 4677777788888888888888766677777888888888


Q ss_pred             eecccCcccCChhccCCCCCceeeccccccccccChhccCCC-CC
Q 035702          158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS-AL  201 (202)
Q Consensus       158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~-~L  201 (202)
                      +++|.+++..+..+..+++|++|++++|++++..|..+..++ +|
T Consensus       206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L  250 (306)
T 2z66_A          206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL  250 (306)
T ss_dssp             CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTC
T ss_pred             CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccC
Confidence            888888755555677788888888888888877777777663 54

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.69  E-value=1.4e-16  Score=137.77  Aligned_cols=111  Identities=17%  Similarity=0.086  Sum_probs=79.1

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      ..++.|++++|.+++..|..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..++++++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            45777777777777766667777777777777777777666777777777777777777777666667777777777777


Q ss_pred             ecccCcccCChhccCCCCCceeecccccccc
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTR  189 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g  189 (202)
                      ++|.+++..|..+.++++|++|++++|.+++
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~  143 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISS  143 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccc
Confidence            7777764334556666666666666666664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.68  E-value=4.7e-16  Score=123.46  Aligned_cols=121  Identities=22%  Similarity=0.198  Sum_probs=89.7

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.++. +|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus        77 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  155 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL  155 (290)
T ss_dssp             TTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CcCCEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence            567777777777764 6666777888888888888888665667778888888888888888554455677888888888


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      ++|++++..+..+..+++|++|++++|+++ .+|..+..+.+|
T Consensus       156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L  197 (290)
T 1p9a_G          156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL  197 (290)
T ss_dssp             TTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCC
T ss_pred             CCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccC
Confidence            888887433334567888888888888887 777777666554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.68  E-value=1.5e-17  Score=145.17  Aligned_cols=121  Identities=18%  Similarity=0.281  Sum_probs=105.7

Q ss_pred             CcEEEEEcCCCCCccc-----------------cCcccc--CCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCc-
Q 035702           79 QRVTELNLSSQRIGGI-----------------LSPYVG--NLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNS-  138 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~-----------------~~~~l~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~-  138 (202)
                      .+++.|++++|.+++.                 +|+.+.  .+++|++|++++|.+.+.+|..++++++|++|++++|. 
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~  285 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG  285 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence            6789999999999986                 888888  99999999999999999999999999999999999998 


Q ss_pred             Ccc-CcChhccCC------CCCcEEEeecccCcccCCh--hccCCCCCceeeccccccccccChhccCCCCC
Q 035702          139 FSG-TIPTNLSRC------SNLIYFHVGNNKLEGQIPK--EIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       139 l~~-~~p~~l~~l------~~L~~L~l~~n~~~g~~p~--~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      ++| .+|..++.+      ++|++|++++|+++ .+|.  .+.++++|++|++++|.++|.+| .++++++|
T Consensus       286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L  355 (636)
T 4eco_A          286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL  355 (636)
T ss_dssp             SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred             CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence            888 788888776      88999999999988 7888  88888899999999998888888 77666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.68  E-value=2.3e-16  Score=120.43  Aligned_cols=111  Identities=20%  Similarity=0.193  Sum_probs=101.1

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.+++..|..|..+++|++|++++|.++...+..+..+++|++|++++|.+++..|..+.++++|++|++
T Consensus        56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  135 (220)
T 2v9t_B           56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL  135 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEEC
Confidence            67999999999999988899999999999999999999555556789999999999999999888889999999999999


Q ss_pred             ecccCcccCChhccCCCCCceeecccccccc
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTR  189 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g  189 (202)
                      ++|++++..+..+..+++|++|++++|.+..
T Consensus       136 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          136 YDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            9999996666678999999999999998863

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.68  E-value=4.6e-16  Score=123.54  Aligned_cols=119  Identities=24%  Similarity=0.288  Sum_probs=69.7

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG  159 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~  159 (202)
                      +++.|++++|.+++. +. ...+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+.++++|++|+++
T Consensus        56 ~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~  132 (290)
T 1p9a_G           56 RLTQLNLDRAELTKL-QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK  132 (290)
T ss_dssp             TCCEEECTTSCCCEE-EC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT
T ss_pred             CCCEEECCCCccCcc-cC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC
Confidence            444445555444442 11 144555555555555555 455556666677777777777764444556677777777777


Q ss_pred             cccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702          160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      +|++++..+..+..+++|+.|++++|++++..+..|.++++|
T Consensus       133 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L  174 (290)
T 1p9a_G          133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL  174 (290)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred             CCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCC
Confidence            777764444445667777777777777763333344555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.68  E-value=1.1e-16  Score=131.73  Aligned_cols=123  Identities=16%  Similarity=0.192  Sum_probs=76.0

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.++++++.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            34566666666666533333556666667777666666555556666666666666666666555555666666666666


Q ss_pred             ecccCcccCChh-ccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKE-IGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~-~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|+++ .+|.. +.++++|++|++++|.+++..|..+.++++|+
T Consensus       125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  168 (390)
T 3o6n_A          125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ  168 (390)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred             CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence            666666 44443 45666666666666666655555566665553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.67  E-value=1.7e-16  Score=124.75  Aligned_cols=121  Identities=20%  Similarity=0.199  Sum_probs=101.4

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  131 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  131 (276)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred             cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence            67889999999998876677888999999999999998777788888999999999999998655557888999999999


Q ss_pred             ecccCcc-cCChhccCCCCCceeeccccccccccChhccCCC
Q 035702          159 GNNKLEG-QIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS  199 (202)
Q Consensus       159 ~~n~~~g-~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~  199 (202)
                      ++|.+++ .+|..+..+++|++|++++|++++..+..+..++
T Consensus       132 ~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  173 (276)
T 2z62_A          132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH  173 (276)
T ss_dssp             CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred             cCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence            9999885 3688888999999999999999866555555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.67  E-value=2.3e-16  Score=121.46  Aligned_cols=121  Identities=17%  Similarity=0.196  Sum_probs=97.7

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCc-CcccCchhccCCCCCCeEeCCC-CcCccCcChhccCCCCCcEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNG-FHGEIPQEIGNLLRLEKLALPN-NSFSGTIPTNLSRCSNLIYF  156 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~ls~-n~l~~~~p~~l~~l~~L~~L  156 (202)
                      ..++.|++++|++++..+..+..+++|++|++++|. ++...+..+..+++|++|++++ |.+++..+..+.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            468899999999998666678899999999999996 8755556788899999999998 89985545678889999999


Q ss_pred             EeecccCcccCChhccCCCCCc---eeecccc-ccccccChhccCCCCC
Q 035702          157 HVGNNKLEGQIPKEIGSLLKLQ---TLALYYN-YLTRQLPDFIGNLSAL  201 (202)
Q Consensus       157 ~l~~n~~~g~~p~~~~~l~~L~---~L~l~~N-~l~g~iP~~~~~l~~L  201 (202)
                      ++++|++++ +|. +..+++|+   +|++++| .+++..+..|.++++|
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L  157 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE  157 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc
Confidence            999998884 676 77777777   8888888 8875555557777665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.67  E-value=5.5e-16  Score=124.74  Aligned_cols=135  Identities=21%  Similarity=0.257  Sum_probs=110.0

Q ss_pred             CCCccccceeCCC---------CCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCC
Q 035702           65 NLCLWTGVTCGHR---------HQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALP  135 (202)
Q Consensus        65 ~~c~w~gv~c~~~---------~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls  135 (202)
                      ..|.|+.+.|...         ...++.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus        29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            4578888888642         1568899999999999777789999999999999999998879999999999999999


Q ss_pred             CCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccc--cccChhccCCCCCC
Q 035702          136 NNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT--RQLPDFIGNLSALE  202 (202)
Q Consensus       136 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~--g~iP~~~~~l~~L~  202 (202)
                      +|.++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.++  +..|..+.++++|+
T Consensus       109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  174 (330)
T 1xku_A          109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  174 (330)
T ss_dssp             SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence            99998 7776654  68888888888888665566778888888888888875  35666677666654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.67  E-value=1.5e-16  Score=137.50  Aligned_cols=122  Identities=20%  Similarity=0.237  Sum_probs=110.5

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.+++..|..|..+++|++|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++
T Consensus        56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  135 (606)
T 3vq2_A           56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV  135 (606)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred             ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence            67999999999999987888999999999999999999888999999999999999999999666688999999999999


Q ss_pred             ecccCcc-cCChhccCCCCCceeeccccccccccChhccCCCC
Q 035702          159 GNNKLEG-QIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSA  200 (202)
Q Consensus       159 ~~n~~~g-~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~  200 (202)
                      ++|.+++ .+|..+.++++|++|++++|++++..|..++.+++
T Consensus       136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  178 (606)
T 3vq2_A          136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE  178 (606)
T ss_dssp             CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH
T ss_pred             CCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc
Confidence            9999986 67999999999999999999999877776665543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.67  E-value=7.3e-16  Score=118.28  Aligned_cols=125  Identities=22%  Similarity=0.288  Sum_probs=106.1

Q ss_pred             cccceeCCCCCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhcc
Q 035702           69 WTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLS  148 (202)
Q Consensus        69 w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~  148 (202)
                      |..-.|..     +.++.++++++. +|..+.  ++|++|++++|.+++..|..+..+++|++|++++|.++...+..+.
T Consensus        14 ~~~~~Cs~-----~~v~c~~~~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~   85 (229)
T 3e6j_A           14 PSQCSCSG-----TTVDCRSKRHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD   85 (229)
T ss_dssp             CTTCEEET-----TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCCCEEeC-----CEeEccCCCcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc
Confidence            34456753     468999999876 666554  8899999999999988888999999999999999999844445678


Q ss_pred             CCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          149 RCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       149 ~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      .+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+.++++|+
T Consensus        86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~  138 (229)
T 3e6j_A           86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLT  138 (229)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCS
T ss_pred             cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCC
Confidence            9999999999999999655556789999999999999999 8999998888775

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.67  E-value=5.3e-16  Score=117.03  Aligned_cols=112  Identities=21%  Similarity=0.231  Sum_probs=92.1

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  131 (208)
T 2o6s_A           52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL  131 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence            67899999999999865566788999999999999999665666788999999999999999655556788999999999


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccc
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQ  190 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~  190 (202)
                      ++|++++..+..+..+++|++|++++|.+.+.
T Consensus       132 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  163 (208)
T 2o6s_A          132 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  163 (208)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             CCCccceeCHHHhccCCCccEEEecCCCeecC
Confidence            99999855555578888888888887765533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.67  E-value=4.5e-16  Score=133.38  Aligned_cols=122  Identities=21%  Similarity=0.219  Sum_probs=57.8

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG  159 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~  159 (202)
                      .++.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|+++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  108 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence            34555555555555444445555555555555555554444444555555555555555543333444445555555555


Q ss_pred             cccCcccCChhccCCCCCceeecccccccc-ccChhccCCCCC
Q 035702          160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTR-QLPDFIGNLSAL  201 (202)
Q Consensus       160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g-~iP~~~~~l~~L  201 (202)
                      +|++++..+..+.++++|++|++++|.+++ .+|..++++++|
T Consensus       109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L  151 (570)
T 2z63_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL  151 (570)
T ss_dssp             TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred             ccccccCCCccccccccccEEecCCCccceecChhhhcccCCC
Confidence            554442222234444444444444444443 234444444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.66  E-value=5.5e-16  Score=113.76  Aligned_cols=107  Identities=18%  Similarity=0.202  Sum_probs=89.6

Q ss_pred             EEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecc
Q 035702           82 TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNN  161 (202)
Q Consensus        82 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n  161 (202)
                      +.+++++++++. +|..+.  ++|++|++++|.+++..|..|..+++|++|++++|++++..+..+.++++|++|++++|
T Consensus        12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            467778888877 666553  78999999999999877888999999999999999999555556789999999999999


Q ss_pred             cCcccCChhccCCCCCceeecccccccccc
Q 035702          162 KLEGQIPKEIGSLLKLQTLALYYNYLTRQL  191 (202)
Q Consensus       162 ~~~g~~p~~~~~l~~L~~L~l~~N~l~g~i  191 (202)
                      ++++..+..+..+++|++|++++|.+++..
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            999655556889999999999999987543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.66  E-value=5.6e-16  Score=129.52  Aligned_cols=123  Identities=20%  Similarity=0.153  Sum_probs=90.7

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      ..++.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            46788889998888877778888888889999888888777778888888888888888888444456788888888888


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccCh-hccCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPD-FIGNLSAL  201 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~-~~~~l~~L  201 (202)
                      ++|.+++..+..+.++++|++|++++|+..+.+|. .|.++++|
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L  187 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL  187 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence            88888754444566666677777766433334443 45555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.66  E-value=1e-15  Score=112.64  Aligned_cols=118  Identities=21%  Similarity=0.235  Sum_probs=98.8

Q ss_pred             EEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecc
Q 035702           82 TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNN  161 (202)
Q Consensus        82 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n  161 (202)
                      +.+++++++++. +|..+  .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            578999999887 55444  378999999999999666667889999999999999999555566799999999999999


Q ss_pred             cCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          162 KLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       162 ~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~  127 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ  127 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccC
Confidence            99966556688999999999999999955555567777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.66  E-value=1.3e-15  Score=122.78  Aligned_cols=131  Identities=21%  Similarity=0.275  Sum_probs=110.6

Q ss_pred             CCCccccceeCCCC---------CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCC
Q 035702           65 NLCLWTGVTCGHRH---------QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALP  135 (202)
Q Consensus        65 ~~c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls  135 (202)
                      ..|.|+.+.|....         .+++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus        31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            44789999886432         478999999999999777789999999999999999998889999999999999999


Q ss_pred             CCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccc--cccChhccCC
Q 035702          136 NNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT--RQLPDFIGNL  198 (202)
Q Consensus       136 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~--g~iP~~~~~l  198 (202)
                      +|.++ .+|..+.  ++|++|++++|++++..+..+.++++|++|++++|.++  +..|..+..+
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  172 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL  172 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence            99999 7887665  79999999999998554556889999999999999985  3556655544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.65  E-value=3.5e-16  Score=135.15  Aligned_cols=121  Identities=20%  Similarity=0.199  Sum_probs=107.4

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|+|++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..++++++|++|++
T Consensus        76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~L  155 (635)
T 4g8a_A           76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  155 (635)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecc
Confidence            67999999999999977778999999999999999999666678999999999999999999655567999999999999


Q ss_pred             ecccCcc-cCChhccCCCCCceeeccccccccccChhccCCC
Q 035702          159 GNNKLEG-QIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS  199 (202)
Q Consensus       159 ~~n~~~g-~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~  199 (202)
                      ++|.+++ .+|..+..+++|++|++++|++++..|..+..+.
T Consensus       156 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~  197 (635)
T 4g8a_A          156 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH  197 (635)
T ss_dssp             CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred             ccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence            9999975 4678889999999999999999988777766543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=6.9e-16  Score=115.63  Aligned_cols=119  Identities=13%  Similarity=0.221  Sum_probs=97.1

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.++.  ++.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        66 ~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A           66 HNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             TTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             CCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence            568888998886654  346888899999999999998777888888999999999999998778888889999999999


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|.+.+.+| .+..+++|++|++++|.+++ ++ .+..+++|+
T Consensus       144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~  184 (197)
T 4ezg_A          144 SYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLN  184 (197)
T ss_dssp             CSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCC
T ss_pred             cCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCC
Confidence            9998333666 68888999999999999884 55 567777664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=6.3e-16  Score=131.09  Aligned_cols=132  Identities=20%  Similarity=0.156  Sum_probs=108.3

Q ss_pred             CCccccceeCCCCCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhcc-CCCCCCeEeCCCCcCccCcC
Q 035702           66 LCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIG-NLLRLEKLALPNNSFSGTIP  144 (202)
Q Consensus        66 ~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~ls~n~l~~~~p  144 (202)
                      .|.+.++.|... ..++.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++. |
T Consensus       108 ~N~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~  185 (487)
T 3oja_A          108 NNNISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K  185 (487)
T ss_dssp             SSCCCCEEECCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E
T ss_pred             CCcCCCCCcccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c
Confidence            355666666543 6789999999999998788888999999999999999988888776 789999999999999854 4


Q ss_pred             hhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          145 TNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       145 ~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      . ...+++|++|++++|.+++ +|+.+..+++|+.|++++|.++ .+|..+..+++|+
T Consensus       186 ~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~  240 (487)
T 3oja_A          186 G-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE  240 (487)
T ss_dssp             C-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred             c-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCC
Confidence            3 4468999999999999995 5556888999999999999998 5788788777664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.64  E-value=1.8e-15  Score=111.53  Aligned_cols=105  Identities=17%  Similarity=0.218  Sum_probs=90.4

Q ss_pred             EEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecc
Q 035702           82 TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNN  161 (202)
Q Consensus        82 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n  161 (202)
                      +.+++++++++. +|..+.  ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+.++++|++|++++|
T Consensus        15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            578999999876 676664  88999999999999888889999999999999999999544445689999999999999


Q ss_pred             cCcccCChhccCCCCCceeecccccccc
Q 035702          162 KLEGQIPKEIGSLLKLQTLALYYNYLTR  189 (202)
Q Consensus       162 ~~~g~~p~~~~~l~~L~~L~l~~N~l~g  189 (202)
                      ++++..+..+..+++|++|++++|.+..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccc
Confidence            9995444458899999999999999983

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.64  E-value=8.9e-16  Score=129.29  Aligned_cols=123  Identities=23%  Similarity=0.210  Sum_probs=82.7

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++
T Consensus        56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l  135 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV  135 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred             CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence            56777777777777766777777777777777777777444445667777777777777777666666677777777777


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      ++|.+++..|..+..+++|++|++++|++++..+..+.++++|
T Consensus       136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  178 (477)
T 2id5_A          136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL  178 (477)
T ss_dssp             CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred             CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC
Confidence            7777665555566666666666666666664333445555444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.64  E-value=4e-16  Score=133.36  Aligned_cols=123  Identities=21%  Similarity=0.242  Sum_probs=110.5

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCcc-CcChhccCCCCCcEEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG-TIPTNLSRCSNLIYFH  157 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~l~~l~~L~~L~  157 (202)
                      .++++|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|++++|.+++ ..|..++++++|++|+
T Consensus        50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  129 (549)
T 2z81_A           50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR  129 (549)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred             CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence            679999999999999888889999999999999999997777779999999999999999986 4577899999999999


Q ss_pred             eecccCcccCC-hhccCCCCCceeeccccccccccChhccCCCCC
Q 035702          158 VGNNKLEGQIP-KEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       158 l~~n~~~g~~p-~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      +++|.+.+.+| ..+.++++|++|++++|.+++.+|..++++++|
T Consensus       130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  174 (549)
T 2z81_A          130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI  174 (549)
T ss_dssp             EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred             CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccC
Confidence            99999655666 578999999999999999999999988877654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.64  E-value=9e-16  Score=115.00  Aligned_cols=119  Identities=18%  Similarity=0.247  Sum_probs=104.5

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.+++++|.+.. ++ .+..+++|++|++++|.++  .++.+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        44 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            568999999999985 55 6889999999999999776  3347889999999999999999888999999999999999


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|++++..|..+..+++|++|++++|.+.+.+| .+..+++|+
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~  162 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELK  162 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCC
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCC
Confidence            9999998788899999999999999998334777 588887774

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.63  E-value=2.3e-16  Score=139.67  Aligned_cols=115  Identities=32%  Similarity=0.469  Sum_probs=106.8

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      ..++.|+|++|.+.. +|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..++++++|++|+|
T Consensus       224 ~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L  300 (727)
T 4b8c_D          224 QLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF  300 (727)
T ss_dssp             CCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred             CCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence            567889999999984 7878889999999999999999 89999999999999999999999 89999999999999999


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGN  197 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~  197 (202)
                      ++|.++ .+|..+..+++|++|+|++|.++|.+|..+..
T Consensus       301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             CCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence            999998 88999999999999999999999988877643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.63  E-value=7.8e-16  Score=113.33  Aligned_cols=117  Identities=23%  Similarity=0.272  Sum_probs=84.0

Q ss_pred             CcEEEEEcCCCCCccccCccccCCC-CCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChh-ccCCCCCcEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLS-FLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTN-LSRCSNLIYF  156 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~-l~~l~~L~~L  156 (202)
                      ..++.|++++|.++. ++. +..+. +|++|++++|.+++.  +.+..+++|++|++++|.++ .+|.. +..+++|++|
T Consensus        19 ~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           19 VRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEE
T ss_pred             CCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEE
Confidence            457788888888775 343 44444 788888888888754  56777888888888888887 44533 4778888888


Q ss_pred             EeecccCcccCCh--hccCCCCCceeeccccccccccChh----ccCCCCCC
Q 035702          157 HVGNNKLEGQIPK--EIGSLLKLQTLALYYNYLTRQLPDF----IGNLSALE  202 (202)
Q Consensus       157 ~l~~n~~~g~~p~--~~~~l~~L~~L~l~~N~l~g~iP~~----~~~l~~L~  202 (202)
                      ++++|.++ .+|.  .+..+++|++|++++|.++ .+|..    +..+++|+
T Consensus        94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~  143 (176)
T 1a9n_A           94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVR  143 (176)
T ss_dssp             ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCS
T ss_pred             ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccc
Confidence            88888886 5665  6777888888888888887 56664    66666653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=8.8e-16  Score=132.45  Aligned_cols=108  Identities=21%  Similarity=0.283  Sum_probs=100.1

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG  159 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~  159 (202)
                      .++.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|++|++++|.+++ +| .++.+++|++|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            47889999999998 666 999999999999999999 889999999999999999999995 78 89999999999999


Q ss_pred             cccCcccC-ChhccCCCCCceeeccccccccccC
Q 035702          160 NNKLEGQI-PKEIGSLLKLQTLALYYNYLTRQLP  192 (202)
Q Consensus       160 ~n~~~g~~-p~~~~~l~~L~~L~l~~N~l~g~iP  192 (202)
                      +|++++.. |..+..+++|+.|++++|.+++..|
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            99999766 8999999999999999999996655

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.63  E-value=6.6e-16  Score=125.45  Aligned_cols=122  Identities=21%  Similarity=0.213  Sum_probs=106.9

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcCh--hccCCCCCcEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPT--NLSRCSNLIYF  156 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~--~l~~l~~L~~L  156 (202)
                      .+++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|.  .+.++++|++|
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L  154 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQIL  154 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEE
Confidence            67999999999999977788999999999999999999554455899999999999999999 5665  78899999999


Q ss_pred             Eeeccc-CcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702          157 HVGNNK-LEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       157 ~l~~n~-~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      ++++|. +++..|..+..+++|++|++++|.+++..|..+.++++|
T Consensus       155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  200 (353)
T 2z80_A          155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV  200 (353)
T ss_dssp             EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred             ECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence            999995 665556788999999999999999998889888887765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.63  E-value=1.8e-15  Score=128.65  Aligned_cols=121  Identities=24%  Similarity=0.307  Sum_probs=74.5

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcc--cCchhccCCCCCCeEeCCCCcCccCcChh-ccCCC----
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHG--EIPQEIGNLLRLEKLALPNNSFSGTIPTN-LSRCS----  151 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~ls~n~l~~~~p~~-l~~l~----  151 (202)
                      ..++.|++++|.+++..|..+..+++|++|++++|.+++  .+|..+..+++|++|++++|.+++.+|.. +..++    
T Consensus       324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~  403 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS  403 (520)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred             CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence            556777777777777666666777777777777777764  44555666667777777777666545543 44444    


Q ss_pred             ------------------CCcEEEeecccCcccCChhccCCCCCceeeccccccccccChh-ccCCCCC
Q 035702          152 ------------------NLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDF-IGNLSAL  201 (202)
Q Consensus       152 ------------------~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~-~~~l~~L  201 (202)
                                        +|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|
T Consensus       404 L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L  470 (520)
T 2z7x_B          404 LNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSL  470 (520)
T ss_dssp             EECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             EECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcc
Confidence                              4555555555555 45555556666666666666666 45544 5555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.63  E-value=1.1e-15  Score=124.74  Aligned_cols=120  Identities=25%  Similarity=0.245  Sum_probs=103.3

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|+|
T Consensus        64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  143 (361)
T 2xot_A           64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL  143 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence            67999999999999977788999999999999999999777778999999999999999999777889999999999999


Q ss_pred             ecccCcccCChhc----cCCCCCceeeccccccccccChhccCCC
Q 035702          159 GNNKLEGQIPKEI----GSLLKLQTLALYYNYLTRQLPDFIGNLS  199 (202)
Q Consensus       159 ~~n~~~g~~p~~~----~~l~~L~~L~l~~N~l~g~iP~~~~~l~  199 (202)
                      ++|+++ .+|..+    ..+++|+.|++++|++++..+..+..++
T Consensus       144 ~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~  187 (361)
T 2xot_A          144 SQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP  187 (361)
T ss_dssp             CSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred             CCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence            999999 566554    5799999999999999943334555443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.62  E-value=1.3e-15  Score=129.56  Aligned_cols=117  Identities=25%  Similarity=0.255  Sum_probs=103.5

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|..  .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            67999999999999977778999999999999999999888889999999999999999999 78876  8999999999


Q ss_pred             ecccCcc-cCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702          159 GNNKLEG-QIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       159 ~~n~~~g-~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      ++|.+++ .+|..++++++|++|++++|.+++.   .+..+++|
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L  138 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHL  138 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTS
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccchh---hccccccc
Confidence            9999986 5788999999999999999999863   45555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=2.8e-16  Score=141.27  Aligned_cols=121  Identities=20%  Similarity=0.280  Sum_probs=99.8

Q ss_pred             CcEEEEEcCCCCCcc-----------------ccCcccc--CCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCc-
Q 035702           79 QRVTELNLSSQRIGG-----------------ILSPYVG--NLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNS-  138 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~-----------------~~~~~l~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~-  138 (202)
                      .+++.|++++|.+++                 .+|+.+.  .+++|++|++++|.+.+.+|..++++++|++|++++|. 
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~  527 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG  527 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence            678899999999988                 4788877  89999999999999888999888899999999999997 


Q ss_pred             Ccc-CcChhccCCC-------CCcEEEeecccCcccCCh--hccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          139 FSG-TIPTNLSRCS-------NLIYFHVGNNKLEGQIPK--EIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       139 l~~-~~p~~l~~l~-------~L~~L~l~~n~~~g~~p~--~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++| .+|..+++++       +|++|++++|.++ .+|.  .+.++++|+.|++++|.++ .+| .++++++|+
T Consensus       528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~  598 (876)
T 4ecn_A          528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLT  598 (876)
T ss_dssp             SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEES
T ss_pred             cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcce
Confidence            887 7887665554       8888888888888 7887  7888888888888888887 777 677666553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.61  E-value=2e-15  Score=130.57  Aligned_cols=124  Identities=16%  Similarity=0.042  Sum_probs=108.4

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.+.+..|..|..+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+.++++|++|++
T Consensus        57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L  136 (606)
T 3t6q_A           57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL  136 (606)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred             ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence            67899999999999988888999999999999999999888889999999999999999999665788899999999999


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|.+++..++.+..+++|++|++++|.+++..|..++.+++|+
T Consensus       137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  180 (606)
T 3t6q_A          137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT  180 (606)
T ss_dssp             CSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred             CCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence            99999863334455589999999999999977788888887764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.61  E-value=1.3e-15  Score=130.49  Aligned_cols=123  Identities=21%  Similarity=0.317  Sum_probs=75.5

Q ss_pred             cEEEEEcCCCCCccccC-ccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCc-cCcChhccCCCCCcEEE
Q 035702           80 RVTELNLSSQRIGGILS-PYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS-GTIPTNLSRCSNLIYFH  157 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~-~~~p~~l~~l~~L~~L~  157 (202)
                      +++.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|+
T Consensus       397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~  476 (570)
T 2z63_A          397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  476 (570)
T ss_dssp             TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence            34444444444444333 23555666666666666666555666666666666666666665 45666666667777777


Q ss_pred             eecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      +++|++++..|..+..+++|++|++++|++++..|..+.++++|+
T Consensus       477 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  521 (570)
T 2z63_A          477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ  521 (570)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence            777776655566666667777777777777655555566666553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1.7e-15  Score=110.57  Aligned_cols=112  Identities=20%  Similarity=0.194  Sum_probs=99.4

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcC--hhccCCCCCcEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIP--TNLSRCSNLIYF  156 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p--~~l~~l~~L~~L  156 (202)
                      .+++.|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++ +|  ..+..+++|++|
T Consensus        49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L  125 (168)
T 2ell_A           49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSL  125 (168)
T ss_dssp             GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEE
T ss_pred             CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEE
Confidence            6799999999999985  779999999999999999997788888889999999999999995 44  788999999999


Q ss_pred             EeecccCcccCC---hhccCCCCCceeeccccccccccChh
Q 035702          157 HVGNNKLEGQIP---KEIGSLLKLQTLALYYNYLTRQLPDF  194 (202)
Q Consensus       157 ~l~~n~~~g~~p---~~~~~l~~L~~L~l~~N~l~g~iP~~  194 (202)
                      ++++|.+++..+   ..+..+++|++|++++|.+. .+|..
T Consensus       126 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          126 DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             ECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             EeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            999999995443   37889999999999999997 67754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.60  E-value=4.6e-16  Score=124.53  Aligned_cols=122  Identities=19%  Similarity=0.156  Sum_probs=75.7

Q ss_pred             CcEEEEEcCCCCCccccCccccCC-----CCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccC--cChhc--cC
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNL-----SFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGT--IPTNL--SR  149 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~--~p~~l--~~  149 (202)
                      .+++.|++++|.+++. |..+..+     ++|++|++++|.+++..|..++.+++|++|++++|.+.+.  +|..+  .+
T Consensus       121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  199 (312)
T 1wwl_A          121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK  199 (312)
T ss_dssp             CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred             CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence            4566666666666664 5545444     6677777777777655556667777777777777776654  23344  66


Q ss_pred             CCCCcEEEeecccCcc--cCC-hhccCCCCCceeeccccccccccC-hhccCCCCC
Q 035702          150 CSNLIYFHVGNNKLEG--QIP-KEIGSLLKLQTLALYYNYLTRQLP-DFIGNLSAL  201 (202)
Q Consensus       150 l~~L~~L~l~~n~~~g--~~p-~~~~~l~~L~~L~l~~N~l~g~iP-~~~~~l~~L  201 (202)
                      +++|++|++++|++++  .++ ..+..+++|++|++++|++++.+| ..+..+++|
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  255 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL  255 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence            7777777777777762  122 223466777777777777776554 334444444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.60  E-value=4.9e-15  Score=127.34  Aligned_cols=122  Identities=24%  Similarity=0.314  Sum_probs=73.5

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcc--cCchhccCCCCCCeEeCCCCcCccCcChh-ccCC-----
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHG--EIPQEIGNLLRLEKLALPNNSFSGTIPTN-LSRC-----  150 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~ls~n~l~~~~p~~-l~~l-----  150 (202)
                      ..++.|++++|.+++..|..+..+++|++|++++|.+++  .+|..+..+++|++|++++|.+++.+|.. +..+     
T Consensus       353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~  432 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV  432 (562)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred             CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence            455666666666666555555666666666666666553  22344555555566666555555434432 2333     


Q ss_pred             -----------------CCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChh-ccCCCCCC
Q 035702          151 -----------------SNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDF-IGNLSALE  202 (202)
Q Consensus       151 -----------------~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~-~~~l~~L~  202 (202)
                                       ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+
T Consensus       433 L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~  500 (562)
T 3a79_B          433 LNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQ  500 (562)
T ss_dssp             EECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCC
T ss_pred             EECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCC
Confidence                             46666666666666 56666667777888888888777 56665 66666553

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.59  E-value=4.5e-15  Score=119.02  Aligned_cols=120  Identities=21%  Similarity=0.167  Sum_probs=87.6

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhcc-CCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIG-NLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH  157 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~  157 (202)
                      ..++.|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++ +|. ...+++|++|+
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~  197 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLD  197 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEEE
Confidence            4577778888887776666777788888888888888866666553 57788888888888773 343 33577888888


Q ss_pred             eecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      +++|+++ .+|..+..+++|++|++++|.++ .+|..+..+++|+
T Consensus       198 Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~  240 (317)
T 3o53_A          198 LSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE  240 (317)
T ss_dssp             CCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred             CCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCC
Confidence            8888887 45556777788888888888887 5777777766654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.59  E-value=5.1e-15  Score=128.29  Aligned_cols=112  Identities=24%  Similarity=0.230  Sum_probs=101.5

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcCh-hccCCCCCcEEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPT-NLSRCSNLIYFH  157 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~L~~L~  157 (202)
                      .+++.|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|++++|.++ .+|. .++++++|++|+
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEE
Confidence            57899999999999977778999999999999999999888888899999999999999999 5554 468999999999


Q ss_pred             eecccCcccCChhccCCCCCceeecccccccccc
Q 035702          158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQL  191 (202)
Q Consensus       158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~i  191 (202)
                      +++|.+++..|..+..+++|++|++++|.+++..
T Consensus       154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  187 (597)
T 3oja_B          154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD  187 (597)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence            9999999877888999999999999999998643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.59  E-value=6e-15  Score=126.79  Aligned_cols=108  Identities=25%  Similarity=0.252  Sum_probs=93.6

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..  .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            57889999999999877778899999999999999999777888899999999999999998 78876  8899999999


Q ss_pred             ecccCcc-cCChhccCCCCCceeecccccccc
Q 035702          159 GNNKLEG-QIPKEIGSLLKLQTLALYYNYLTR  189 (202)
Q Consensus       159 ~~n~~~g-~~p~~~~~l~~L~~L~l~~N~l~g  189 (202)
                      ++|++++ .+|..+.++++|++|++++|.+++
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCcccc
Confidence            9999885 456788889999999999998874

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.59  E-value=7.4e-15  Score=123.11  Aligned_cols=121  Identities=23%  Similarity=0.273  Sum_probs=69.8

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChh------------
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTN------------  146 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~------------  146 (202)
                      .+++.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.++...+..            
T Consensus        99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  178 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL  178 (452)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeC
Confidence            56777777777777766666777777777777777777554555666777777777776666322222            


Q ss_pred             -------------ccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702          147 -------------LSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       147 -------------l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                                   +.++++|++|++++|+++ .+| .+..+++|++|++++|.+++..|..|.++++|
T Consensus       179 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  244 (452)
T 3zyi_A          179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL  244 (452)
T ss_dssp             CCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTC
T ss_pred             CCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCC
Confidence                         334444445554444444 222 24444455555555555554445555544444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.58  E-value=9.2e-15  Score=120.15  Aligned_cols=111  Identities=24%  Similarity=0.254  Sum_probs=99.9

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChh-ccCCCCCcEEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTN-LSRCSNLIYFH  157 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~-l~~l~~L~~L~  157 (202)
                      .+++.|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|++++|.++ .+|.. +.++++|++|+
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence            57899999999999877778999999999999999999877888999999999999999999 66655 58999999999


Q ss_pred             eecccCcccCChhccCCCCCceeeccccccccc
Q 035702          158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQ  190 (202)
Q Consensus       158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~  190 (202)
                      +++|.+++..|..+..+++|++|++++|.+++.
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            999999977677899999999999999999854

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.58  E-value=5.8e-15  Score=132.63  Aligned_cols=120  Identities=18%  Similarity=0.194  Sum_probs=93.7

Q ss_pred             CcEEEEEcCCCCCcccc-CccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChh--ccCCCCCcE
Q 035702           79 QRVTELNLSSQRIGGIL-SPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTN--LSRCSNLIY  155 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~--l~~l~~L~~  155 (202)
                      .+++.|++++|...+.+ |..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++.+|..  +.++++|++
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~  127 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR  127 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred             ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence            56788888888666555 567888888888888888888777888888888888888888888766655  778888888


Q ss_pred             EEeecccCcccCC-hhccCCCCCceeeccccccccccChhccCC
Q 035702          156 FHVGNNKLEGQIP-KEIGSLLKLQTLALYYNYLTRQLPDFIGNL  198 (202)
Q Consensus       156 L~l~~n~~~g~~p-~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l  198 (202)
                      |++++|.+++..+ ..+.++++|++|++++|.+++..|..+..+
T Consensus       128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l  171 (844)
T 3j0a_A          128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL  171 (844)
T ss_dssp             EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred             EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence            8888888876544 467888888888888888877777666543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.57  E-value=1.4e-15  Score=121.72  Aligned_cols=117  Identities=19%  Similarity=0.178  Sum_probs=86.1

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCccc--Cchhc--cCCCCCCeEeCCCCcCcc--CcC-hhccCCC
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGE--IPQEI--GNLLRLEKLALPNNSFSG--TIP-TNLSRCS  151 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~p~~~--~~l~~L~~L~ls~n~l~~--~~p-~~l~~l~  151 (202)
                      .+++.|++++|.+.+..+..+..+++|++|++++|.+.+.  .|..+  ..+++|++|++++|.+++  .++ ..+.+++
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~  228 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV  228 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence            5678888888888886667788888888888888887655  33444  678888888888888872  222 2335778


Q ss_pred             CCcEEEeecccCcccCC-hhccCCCCCceeeccccccccccChhcc
Q 035702          152 NLIYFHVGNNKLEGQIP-KEIGSLLKLQTLALYYNYLTRQLPDFIG  196 (202)
Q Consensus       152 ~L~~L~l~~n~~~g~~p-~~~~~l~~L~~L~l~~N~l~g~iP~~~~  196 (202)
                      +|++|++++|++++..| ..+..+++|++|++++|+++ .+|..+.
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~  273 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP  273 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred             CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence            88888888888886654 34556778888888888887 7776554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.56  E-value=1.8e-14  Score=115.85  Aligned_cols=56  Identities=18%  Similarity=0.200  Sum_probs=24.0

Q ss_pred             ChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCC
Q 035702          144 PTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSA  200 (202)
Q Consensus       144 p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~  200 (202)
                      |..+.++++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++
T Consensus       209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~  264 (330)
T 1xku_A          209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY  264 (330)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSS
T ss_pred             HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCC
Confidence            333444444444444444444333333444444444444444444 44444444333

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.56  E-value=6.5e-15  Score=129.00  Aligned_cols=114  Identities=21%  Similarity=0.215  Sum_probs=61.0

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.+++..|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++++++|++|++
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  128 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL  128 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred             CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence            34555566655555554555555555555555555555332234555555555555555555433345555555555555


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP  192 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP  192 (202)
                      ++|.+++..|..+.++++|++|++++|.+++..|
T Consensus       129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  162 (680)
T 1ziw_A          129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS  162 (680)
T ss_dssp             CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred             CCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence            5555554444445555555555555555554333

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.56  E-value=1.8e-14  Score=120.31  Aligned_cols=57  Identities=21%  Similarity=0.197  Sum_probs=33.4

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCC
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALP  135 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls  135 (202)
                      .+++.|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus       112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~  168 (440)
T 3zyj_A          112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG  168 (440)
T ss_dssp             SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred             ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC
Confidence            567777777777776544556677777777777776664333333333333333333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.54  E-value=7e-15  Score=124.68  Aligned_cols=120  Identities=23%  Similarity=0.217  Sum_probs=60.2

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcCh--------------
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPT--------------  145 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~--------------  145 (202)
                      +++.|++++|.+++..|..+..+++|++|++++|.+++..|  +..+++|++|++++|.+++..+.              
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~  112 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS  112 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence            45555555555555444455555555555555555554333  44444444444444444321000              


Q ss_pred             --hccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhcc-CCCCC
Q 035702          146 --NLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIG-NLSAL  201 (202)
Q Consensus       146 --~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~-~l~~L  201 (202)
                        ....+++|+.|++++|.+++..|..+..+++|++|++++|.+++.+|..+. .+++|
T Consensus       113 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L  171 (487)
T 3oja_A          113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL  171 (487)
T ss_dssp             CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred             CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence              001234556666666666655455555566666666666666655555554 34443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=6.4e-15  Score=105.34  Aligned_cols=104  Identities=19%  Similarity=0.179  Sum_probs=92.2

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccC-cChhccCCCCCcEEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGT-IPTNLSRCSNLIYFH  157 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~L~  157 (202)
                      .+++.|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|+
T Consensus        42 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~  119 (149)
T 2je0_A           42 EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD  119 (149)
T ss_dssp             TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred             CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence            6799999999999985  7789999999999999999977888888899999999999999952 347899999999999


Q ss_pred             eecccCcccCC---hhccCCCCCceeeccc
Q 035702          158 VGNNKLEGQIP---KEIGSLLKLQTLALYY  184 (202)
Q Consensus       158 l~~n~~~g~~p---~~~~~l~~L~~L~l~~  184 (202)
                      +++|.+++..+   ..+..+++|+.|++++
T Consensus       120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          120 LFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999996544   4688999999999863

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.54  E-value=1.6e-14  Score=116.41  Aligned_cols=123  Identities=19%  Similarity=0.173  Sum_probs=91.3

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      ..++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus       193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l  271 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL  271 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence            45777788888887766677788888888888888888666667778888888888888887 77877888888888888


Q ss_pred             ecccCcccCChhccC------CCCCceeeccccccc--cccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKEIGS------LLKLQTLALYYNYLT--RQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~------l~~L~~L~l~~N~l~--g~iP~~~~~l~~L~  202 (202)
                      ++|++++..+..+..      .++|+.+++++|.+.  +..|..|..+++|+
T Consensus       272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~  323 (332)
T 2ft3_A          272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL  323 (332)
T ss_dssp             CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred             CCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhh
Confidence            888887443444433      356788888888776  45566676666653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.54  E-value=1.1e-14  Score=112.03  Aligned_cols=112  Identities=19%  Similarity=0.210  Sum_probs=72.5

Q ss_pred             CcEEEEEcCCCC-CccccCccccCCCCCcEEEccC-CcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCc--
Q 035702           79 QRVTELNLSSQR-IGGILSPYVGNLSFLRYINLAD-NGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLI--  154 (202)
Q Consensus        79 ~~v~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~--  154 (202)
                      .+++.|++++|. +++..+..+..+++|++|++++ |.+++..+..+..+++|++|++++|.+++ +|. +..+++|+  
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L  132 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF  132 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence            567777777776 6665445677777777777777 77775555566777777777777777763 555 55666665  


Q ss_pred             -EEEeecc-cCcccCChhccCCCCCc-eeeccccccccccCh
Q 035702          155 -YFHVGNN-KLEGQIPKEIGSLLKLQ-TLALYYNYLTRQLPD  193 (202)
Q Consensus       155 -~L~l~~n-~~~g~~p~~~~~l~~L~-~L~l~~N~l~g~iP~  193 (202)
                       +|++++| .+++..+..+..+++|+ +|++++|+++ .+|.
T Consensus       133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~  173 (239)
T 2xwt_C          133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG  173 (239)
T ss_dssp             EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT
T ss_pred             cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH
Confidence             6666666 66533333456666666 6666666665 4444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.54  E-value=5.7e-15  Score=118.41  Aligned_cols=118  Identities=21%  Similarity=0.221  Sum_probs=102.7

Q ss_pred             CcEEEEEcCCCCCccccCcccc-CCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVG-NLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH  157 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~  157 (202)
                      ..++.|++++|.+++..+..+. .+++|++|++++|.+++. +. ...+++|++|++++|.++ .+|..+..+++|++|+
T Consensus       144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~  220 (317)
T 3o53_A          144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS  220 (317)
T ss_dssp             SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEE
T ss_pred             CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEE
Confidence            6799999999999997776664 789999999999999854 43 346899999999999999 6777799999999999


Q ss_pred             eecccCcccCChhccCCCCCceeeccccccc-cccChhccCCCC
Q 035702          158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLT-RQLPDFIGNLSA  200 (202)
Q Consensus       158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~-g~iP~~~~~l~~  200 (202)
                      +++|+++ .+|..+..+++|+.|++++|.++ +.+|..+..+++
T Consensus       221 L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~  263 (317)
T 3o53_A          221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR  263 (317)
T ss_dssp             CTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred             CcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence            9999999 68888999999999999999998 777777776654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.54  E-value=3.2e-14  Score=104.27  Aligned_cols=102  Identities=19%  Similarity=0.209  Sum_probs=87.8

Q ss_pred             CCCccccceeCCC---------CCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCC
Q 035702           65 NLCLWTGVTCGHR---------HQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALP  135 (202)
Q Consensus        65 ~~c~w~gv~c~~~---------~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls  135 (202)
                      ..|.|+.+.|...         ...++.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus         7 C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A            7 CSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             CEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3467777877643         1578999999999999878889999999999999999996666678899999999999


Q ss_pred             CCcCccCcChhccCCCCCcEEEeecccCccc
Q 035702          136 NNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQ  166 (202)
Q Consensus       136 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~  166 (202)
                      +|.+++..+..+..+++|++|++++|.++..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999965556689999999999999999854

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.53  E-value=1.3e-14  Score=125.11  Aligned_cols=117  Identities=23%  Similarity=0.326  Sum_probs=78.6

Q ss_pred             CCCCCCCCC-----ccccc-eeCCCCCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeE
Q 035702           59 SWNNTINLC-----LWTGV-TCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKL  132 (202)
Q Consensus        59 ~W~~~~~~c-----~w~gv-~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  132 (202)
                      .|..+.++|     .|.|+ .|..  .+++.|++++|++++ +|..+.  ++|++|++++|.++ .+|   ..+++|++|
T Consensus        35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L  105 (571)
T 3cvr_A           35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYL  105 (571)
T ss_dssp             HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred             HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence            355555666     68898 6764  578888888888887 666553  67888888888877 566   346777777


Q ss_pred             eCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccCh
Q 035702          133 ALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPD  193 (202)
Q Consensus       133 ~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~  193 (202)
                      ++++|.+++ +|. +.+  +|++|++++|++++ +|.   .+++|+.|++++|.+++ +|.
T Consensus       106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~  157 (571)
T 3cvr_A          106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE  157 (571)
T ss_dssp             ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred             EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC
Confidence            777777774 666 544  66666666666664 554   45566666666666653 454

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.53  E-value=7.6e-15  Score=117.27  Aligned_cols=114  Identities=18%  Similarity=0.176  Sum_probs=65.6

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCccc--Cc--hhccCCCCCCeEeCCCCcCccCcCh----hccCC
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGE--IP--QEIGNLLRLEKLALPNNSFSGTIPT----NLSRC  150 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~p--~~~~~l~~L~~L~ls~n~l~~~~p~----~l~~l  150 (202)
                      .+++.|++++|.+.+..+..+..+++|++|++++|.+.+.  ++  ..++.+++|++|++++|.++ .++.    .+..+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence            5678888888888776667777888888888888876542  11  12244555555555555554 2222    12444


Q ss_pred             CCCcEEEeecccCcccCChhccCC---CCCceeeccccccccccChh
Q 035702          151 SNLIYFHVGNNKLEGQIPKEIGSL---LKLQTLALYYNYLTRQLPDF  194 (202)
Q Consensus       151 ~~L~~L~l~~n~~~g~~p~~~~~l---~~L~~L~l~~N~l~g~iP~~  194 (202)
                      ++|++|++++|++++..|..+..+   ++|++|++++|+++ .+|..
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~  269 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKG  269 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhh
Confidence            555555555555554444444443   35555555555555 44443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.52  E-value=5.2e-14  Score=113.89  Aligned_cols=101  Identities=18%  Similarity=0.171  Sum_probs=84.1

Q ss_pred             EcCCC-CCccccCccccCCCCCcEEEccC-CcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeeccc
Q 035702           85 NLSSQ-RIGGILSPYVGNLSFLRYINLAD-NGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNK  162 (202)
Q Consensus        85 ~l~~~-~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~  162 (202)
                      +++++ ++++ +|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|+
T Consensus        14 ~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           14 RCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             ECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            33444 6666 777 99999999999996 99997777889999999999999999998778888999999999999999


Q ss_pred             CcccCChhccCCCCCceeeccccccc
Q 035702          163 LEGQIPKEIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       163 ~~g~~p~~~~~l~~L~~L~l~~N~l~  188 (202)
                      +++..+..+..++ |+.|++.+|.+.
T Consensus        92 l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           92 LESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             cceeCHHHcccCC-ceEEEeeCCCcc
Confidence            9954333444444 999999999987

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.52  E-value=7.7e-14  Score=110.68  Aligned_cols=112  Identities=30%  Similarity=0.401  Sum_probs=53.7

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG  159 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~  159 (202)
                      +++.|++++|.+++ ++ .+..+++|++|++++|.+++ + +.+..+++|++|++++|.+++.  ..+..+++|++|+++
T Consensus        91 ~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~  164 (291)
T 1h6t_A           91 NLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE  164 (291)
T ss_dssp             TCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred             CCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEcc
Confidence            34444444444433 11 24444444444444444442 1 2344455555555555555422  344555555555555


Q ss_pred             cccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702          160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      +|.+++ ++. +..+++|+.|++++|.++ .+|. +..+++|
T Consensus       165 ~N~l~~-~~~-l~~l~~L~~L~L~~N~i~-~l~~-l~~l~~L  202 (291)
T 1h6t_A          165 DNQISD-IVP-LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNL  202 (291)
T ss_dssp             SSCCCC-CGG-GTTCTTCCEEECCSSCCC-BCGG-GTTCTTC
T ss_pred             CCcccc-chh-hcCCCccCEEECCCCcCC-CChh-hccCCCC
Confidence            555553 222 555566666666666665 3332 4555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.51  E-value=1.4e-13  Score=109.19  Aligned_cols=114  Identities=31%  Similarity=0.492  Sum_probs=93.7

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.+++. ++ +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ + +.+..+++|++|++
T Consensus        68 ~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l  141 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL  141 (291)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEEC
T ss_pred             CCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEc
Confidence            6788999999999884 34 8889999999999999884 44 48889999999999999984 4 46788999999999


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|++++ + ..+..+++|++|++++|.+++..|  +..+++|+
T Consensus       142 ~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~  181 (291)
T 1h6t_A          142 GNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ  181 (291)
T ss_dssp             CSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             cCCcCCc-c-hhhccCCCCCEEEccCCccccchh--hcCCCccC
Confidence            9999984 4 578889999999999999985444  77777764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=1.7e-14  Score=106.13  Aligned_cols=106  Identities=18%  Similarity=0.158  Sum_probs=93.8

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcCh--hccCCCCCcEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPT--NLSRCSNLIYF  156 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~--~l~~l~~L~~L  156 (202)
                      .+++.|++++|.+++.  +.+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|.  .+..+++|++|
T Consensus        42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L  118 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL  118 (176)
T ss_dssp             TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred             CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence            3799999999999985  67999999999999999999554455588999999999999997 7776  78999999999


Q ss_pred             EeecccCcccCChh----ccCCCCCceeeccccccc
Q 035702          157 HVGNNKLEGQIPKE----IGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       157 ~l~~n~~~g~~p~~----~~~l~~L~~L~l~~N~l~  188 (202)
                      ++++|.++ .+|..    +..+++|+.|+++.|...
T Consensus       119 ~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          119 CILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             ECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99999998 66764    889999999999999765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.51  E-value=1.5e-13  Score=109.86  Aligned_cols=102  Identities=25%  Similarity=0.425  Sum_probs=51.3

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.+++.  +.+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++. +..+++|++|++
T Consensus        85 ~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l  158 (308)
T 1h6u_A           85 TKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSI  158 (308)
T ss_dssp             CSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEc
Confidence            4566666666666652  245556666666666666553 222 4555555555555555552 222 444444555555


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccc
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~  188 (202)
                      ++|.+++ ++. +..+++|+.|++++|.++
T Consensus       159 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          159 GNAQVSD-LTP-LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             CSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred             cCCcCCC-Chh-hcCCCCCCEEECCCCccC
Confidence            5444442 222 444444444444444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.51  E-value=8.3e-14  Score=112.50  Aligned_cols=116  Identities=30%  Similarity=0.470  Sum_probs=91.6

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.+++. ++ +..+++|++|++++|.+++ + +.+..+++|++|++++|.+++ + +.+..+++|++|++
T Consensus       221 ~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L  294 (347)
T 4fmz_A          221 TRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFL  294 (347)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred             CcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEEC
Confidence            5678888888888774 33 7788888888888888874 3 457788888999999888884 4 35778889999999


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|.+++..|..+..+++|++|++++|++++..|  +..+++|+
T Consensus       295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  336 (347)
T 4fmz_A          295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD  336 (347)
T ss_dssp             CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred             cCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence            9999887777788888999999999999886655  66666653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.50  E-value=1.5e-13  Score=109.82  Aligned_cols=114  Identities=24%  Similarity=0.394  Sum_probs=97.0

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.+.+. ++ +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++. +..+++|++|++
T Consensus        63 ~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l  136 (308)
T 1h6u_A           63 NNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYL  136 (308)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEEC
Confidence            6789999999999884 44 8999999999999999984 44 68899999999999999984 554 889999999999


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|.+++ ++. +..+++|++|++++|.+++ +|. +.++++|+
T Consensus       137 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~  176 (308)
T 1h6u_A          137 DLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLT  176 (308)
T ss_dssp             CSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCC
T ss_pred             CCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCC
Confidence            9999984 444 8899999999999999984 454 77777764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.50  E-value=1.4e-13  Score=107.74  Aligned_cols=113  Identities=29%  Similarity=0.388  Sum_probs=80.0

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.+++. ++ +..+++|++|++++|.+++ +|. +.. ++|++|++++|.+++ ++ .+..+++|++|++
T Consensus        63 ~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~L  135 (263)
T 1xeu_A           63 TNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSI  135 (263)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEEC
Confidence            5678888888888874 33 7788888888888888874 443 223 777788888887774 33 4777788888888


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|++++ ++ .+..+++|++|++++|.+++.  ..+..+++|+
T Consensus       136 s~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~  175 (263)
T 1xeu_A          136 RNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVN  175 (263)
T ss_dssp             TTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCC
T ss_pred             CCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCC
Confidence            8888774 44 567777788888888877744  4566666553

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.50  E-value=1.3e-14  Score=115.91  Aligned_cols=96  Identities=14%  Similarity=0.074  Sum_probs=48.1

Q ss_pred             CCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccC--cC--hhccCCCCCcEEEeecccCcccCCh----hccC
Q 035702          102 LSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGT--IP--TNLSRCSNLIYFHVGNNKLEGQIPK----EIGS  173 (202)
Q Consensus       102 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~--~p--~~l~~l~~L~~L~l~~n~~~g~~p~----~~~~  173 (202)
                      +++|++|++++|.+++..+..+..+++|++|++++|.+.+.  ++  ..+..+++|++|++++|+++ .++.    .+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence            44444444444444433344444445555555555544321  11  11234445555555555554 2222    1345


Q ss_pred             CCCCceeeccccccccccChhccCC
Q 035702          174 LLKLQTLALYYNYLTRQLPDFIGNL  198 (202)
Q Consensus       174 l~~L~~L~l~~N~l~g~iP~~~~~l  198 (202)
                      +++|++|++++|.+++.+|..+..+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~  247 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRC  247 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhc
Confidence            6777777777777776667666655

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.50  E-value=1.4e-13  Score=107.65  Aligned_cols=113  Identities=23%  Similarity=0.317  Sum_probs=96.3

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|+++. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.++ .+|.. .. ++|++|++
T Consensus        41 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~-~l~~~-~~-~~L~~L~L  113 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLK-NLNGI-PS-ACLSRLFL  113 (263)
T ss_dssp             TTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCS-CCTTC-CC-SSCCEEEC
T ss_pred             CcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccC-CcCcc-cc-CcccEEEc
Confidence            578999999999987 45 688999999999999999954 44 899999999999999999 46653 33 99999999


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|++++ ++ .+..+++|+.|++++|++++ +| .+..+++|+
T Consensus       114 ~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~  153 (263)
T 1xeu_A          114 DNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLE  153 (263)
T ss_dssp             CSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCC
T ss_pred             cCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCC
Confidence            9999995 44 68999999999999999984 55 577777764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.48  E-value=2.2e-13  Score=100.21  Aligned_cols=95  Identities=23%  Similarity=0.227  Sum_probs=81.5

Q ss_pred             CcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccc
Q 035702          105 LRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYY  184 (202)
Q Consensus       105 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~  184 (202)
                      -+.+++++|.++ .+|..+.  ++|++|++++|.+++..|..+.++++|++|+|++|++++..+..+.++++|++|++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            368999999997 7888664  8999999999999987788999999999999999999954444578999999999999


Q ss_pred             cccccccChhccCCCCCC
Q 035702          185 NYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       185 N~l~g~iP~~~~~l~~L~  202 (202)
                      |++++..+..|.++++|+
T Consensus        91 N~l~~l~~~~~~~l~~L~  108 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLT  108 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCS
T ss_pred             CccceeCHHHhccccCCC
Confidence            999955555588888774

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.46  E-value=4.1e-13  Score=112.88  Aligned_cols=112  Identities=29%  Similarity=0.423  Sum_probs=57.3

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG  159 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~  159 (202)
                      .++.|++++|.+.+. ++ +..+++|++|++++|.+++..+  +..+++|+.|++++|.+++..|  +..+++|+.|+++
T Consensus       266 ~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~  339 (466)
T 1o6v_A          266 KLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY  339 (466)
T ss_dssp             TCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred             CCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECC
Confidence            444555555555442 22 4455555555555555553222  4455555555555555554333  4455555555555


Q ss_pred             cccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702          160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      +|++++.  +.+..+++|+.|++++|++++..|  +..+++|
T Consensus       340 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L  377 (466)
T 1o6v_A          340 NNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRI  377 (466)
T ss_dssp             SSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred             CCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCC
Confidence            5555532  345555666666666666655444  4444444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.46  E-value=3.4e-13  Score=117.10  Aligned_cols=114  Identities=30%  Similarity=0.415  Sum_probs=66.8

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|+|++|.+.+ + +.+..+++|+.|++++|.+++ + +.+..+++|+.|+|++|.+++.  ..+..+++|+.|+|
T Consensus        87 ~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L  160 (605)
T 1m9s_A           87 KNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL  160 (605)
T ss_dssp             TTCCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEEC
T ss_pred             CCCCEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEEC
Confidence            345555555555554 2 245555666666666666553 2 2355666666666666666632  45666667777777


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|.+++..|  +..+++|+.|+|++|.+++ +| .+..+++|+
T Consensus       161 s~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~  200 (605)
T 1m9s_A          161 EDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLD  200 (605)
T ss_dssp             CSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCS
T ss_pred             cCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCC
Confidence            7776664333  6666777777777777763 33 456666553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=4e-16  Score=117.05  Aligned_cols=118  Identities=24%  Similarity=0.287  Sum_probs=100.9

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|++|++
T Consensus        48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l  122 (198)
T 1ds9_A           48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred             CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence            578999999999988 66 7889999999999999998 778877778999999999999994 66 6888999999999


Q ss_pred             ecccCcccCC--hhccCCCCCceeeccccccccccChh----------ccCCCCCC
Q 035702          159 GNNKLEGQIP--KEIGSLLKLQTLALYYNYLTRQLPDF----------IGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p--~~~~~l~~L~~L~l~~N~l~g~iP~~----------~~~l~~L~  202 (202)
                      ++|.+++ ++  ..+..+++|++|++++|.+++.+|..          +..+++|+
T Consensus       123 ~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~  177 (198)
T 1ds9_A          123 SNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             SEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred             CCCcCCc-hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence            9999984 33  36889999999999999998776653          66666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.45  E-value=1.6e-14  Score=116.20  Aligned_cols=122  Identities=18%  Similarity=0.236  Sum_probs=58.6

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCC-cCccc-CchhccCCCCCCeEeCCCC-cCccC-cChhccCCC-CCc
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADN-GFHGE-IPQEIGNLLRLEKLALPNN-SFSGT-IPTNLSRCS-NLI  154 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L~ls~n-~l~~~-~p~~l~~l~-~L~  154 (202)
                      ++++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+
T Consensus       119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~  198 (336)
T 2ast_B          119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT  198 (336)
T ss_dssp             CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred             CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence            3444455544444444444444555555555555 34431 3333444455555555555 44432 334444455 555


Q ss_pred             EEEeecc--cCc-ccCChhccCCCCCceeeccccc-cccccChhccCCCCC
Q 035702          155 YFHVGNN--KLE-GQIPKEIGSLLKLQTLALYYNY-LTRQLPDFIGNLSAL  201 (202)
Q Consensus       155 ~L~l~~n--~~~-g~~p~~~~~l~~L~~L~l~~N~-l~g~iP~~~~~l~~L  201 (202)
                      +|++++|  .++ +.+|..+.++++|++|++++|. +++..+..+.++++|
T Consensus       199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L  249 (336)
T 2ast_B          199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  249 (336)
T ss_dssp             EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence            5555555  233 2334444455556666666555 454555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.44  E-value=6e-13  Score=115.55  Aligned_cols=114  Identities=31%  Similarity=0.484  Sum_probs=78.9

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|+|++|.+.+.. + +..+++|+.|++++|.+++ +| .+..+++|+.|+|++|.+++ + +.+..+++|+.|+|
T Consensus        65 ~~L~~L~Ls~N~l~~~~-~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~L  138 (605)
T 1m9s_A           65 PNVTKLFLNGNKLTDIK-P-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL  138 (605)
T ss_dssp             TTCCEEECTTSCCCCCG-G-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEEC
T ss_pred             CCCCEEEeeCCCCCCCh-h-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEEC
Confidence            56777777777777643 3 6777777777777777763 33 56777777777777777773 3 34677777777777


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|.+++ + ..+..+++|+.|+|++|.+++..|  +..+++|+
T Consensus       139 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~  178 (605)
T 1m9s_A          139 GNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ  178 (605)
T ss_dssp             CSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             CCCccCC-c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCC
Confidence            7777774 3 456777777777777777775544  66666653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=4.5e-16  Score=116.76  Aligned_cols=117  Identities=21%  Similarity=0.302  Sum_probs=96.9

Q ss_pred             cEEEEEcCCCCCccccCc------cccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCC
Q 035702           80 RVTELNLSSQRIGGILSP------YVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNL  153 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~------~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L  153 (202)
                      .++.++++.+.+.|..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            344555555555555554      78999999999999999995 77 7889999999999999999 789888888999


Q ss_pred             cEEEeecccCcccCChhccCCCCCceeeccccccccccC--hhccCCCCCC
Q 035702          154 IYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP--DFIGNLSALE  202 (202)
Q Consensus       154 ~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP--~~~~~l~~L~  202 (202)
                      ++|++++|++++ +| .+..+++|++|++++|.+++ +|  ..+..+++|+
T Consensus        96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~  143 (198)
T 1ds9_A           96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLE  143 (198)
T ss_dssp             SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCS
T ss_pred             CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCC
Confidence            999999999995 55 68899999999999999984 33  4677777764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.44  E-value=3.3e-13  Score=116.39  Aligned_cols=94  Identities=23%  Similarity=0.322  Sum_probs=87.1

Q ss_pred             CCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeecc
Q 035702          104 FLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALY  183 (202)
Q Consensus       104 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~  183 (202)
                      .|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++++++|++|++++|.+++ +| .+..+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            57889999999995 776 999999999999999999 899999999999999999999995 77 89999999999999


Q ss_pred             cccccccc-ChhccCCCCCC
Q 035702          184 YNYLTRQL-PDFIGNLSALE  202 (202)
Q Consensus       184 ~N~l~g~i-P~~~~~l~~L~  202 (202)
                      +|.+++.. |..++.+++|+
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~  536 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLV  536 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCC
T ss_pred             CCCCCCCCCcHHHhcCCCCC
Confidence            99999776 99999999875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.43  E-value=2.2e-14  Score=115.32  Aligned_cols=122  Identities=21%  Similarity=0.256  Sum_probs=61.5

Q ss_pred             cEEEEEcCCCCCccc-cCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCC-cCccC-cChhccCCCCCcEE
Q 035702           80 RVTELNLSSQRIGGI-LSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNN-SFSGT-IPTNLSRCSNLIYF  156 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n-~l~~~-~p~~l~~l~~L~~L  156 (202)
                      +++.|++++|.+.+. ++..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+.++++|++|
T Consensus        94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L  173 (336)
T 2ast_B           94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  173 (336)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence            445555555554433 4444455555555555555555445555555555555555555 34432 34444555555555


Q ss_pred             Eeecc-cCccc-CChhccCCC-CCceeecccc--ccc-cccChhccCCCCC
Q 035702          157 HVGNN-KLEGQ-IPKEIGSLL-KLQTLALYYN--YLT-RQLPDFIGNLSAL  201 (202)
Q Consensus       157 ~l~~n-~~~g~-~p~~~~~l~-~L~~L~l~~N--~l~-g~iP~~~~~l~~L  201 (202)
                      ++++| .+++. ++..+..++ +|++|++++|  .++ +.+|..+.++++|
T Consensus       174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L  224 (336)
T 2ast_B          174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL  224 (336)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTC
T ss_pred             cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCC
Confidence            55555 55432 344445555 5555555555  333 3444444444444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.43  E-value=7.8e-13  Score=106.76  Aligned_cols=116  Identities=24%  Similarity=0.372  Sum_probs=86.9

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      ..++.+++++|.+.+..+  +..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + +.+..+++|++|++
T Consensus       199 ~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l  272 (347)
T 4fmz_A          199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNV  272 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEEC
T ss_pred             CccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEc
Confidence            345555555555554222  6677788888888888874 333 7788888888888888874 3 45788889999999


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|.+++ + +.+..+++|+.|++++|.+++..|..++.+++|+
T Consensus       273 ~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          273 GSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             CSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred             cCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence            9998884 4 4578888999999999999888888888888774

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.41  E-value=1.4e-12  Score=109.77  Aligned_cols=101  Identities=21%  Similarity=0.267  Sum_probs=49.5

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.+++. +  +..+++|++|++++|.+++. +  ++.+++|++|++++|.+++ +|  ++.+++|++|++
T Consensus        64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l  134 (457)
T 3bz5_A           64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC  134 (457)
T ss_dssp             TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence            3445555555555542 2  44455555555555555532 2  4455555555555555553 22  445555555555


Q ss_pred             ecccCcccCChhccCCCCCceeecccccccccc
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQL  191 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~i  191 (202)
                      ++|++++ ++  +..+++|++|++++|...+.+
T Consensus       135 ~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~  164 (457)
T 3bz5_A          135 ARNTLTE-ID--VSHNTQLTELDCHLNKKITKL  164 (457)
T ss_dssp             TTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC
T ss_pred             CCCccce-ec--cccCCcCCEEECCCCCccccc
Confidence            5555553 22  445555555555555433344

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.41  E-value=2.6e-13  Score=117.03  Aligned_cols=104  Identities=25%  Similarity=0.370  Sum_probs=51.3

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG  159 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~  159 (202)
                      .++.|++++|.+++ +|.   .+++|+.|++++|.+++ +|.   .+++|++|++++|.+++ +|. +.  ++|++|+++
T Consensus       121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls  188 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS  188 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred             CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence            45555555555555 333   34556666666666653 443   34556666666666553 444 33  455555555


Q ss_pred             cccCcccCChhccCCCCC-------ceeeccccccccccChhccCCCC
Q 035702          160 NNKLEGQIPKEIGSLLKL-------QTLALYYNYLTRQLPDFIGNLSA  200 (202)
Q Consensus       160 ~n~~~g~~p~~~~~l~~L-------~~L~l~~N~l~g~iP~~~~~l~~  200 (202)
                      +|+++ .+|. +..  +|       +.|++++|+++ .+|..+.++++
T Consensus       189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~  231 (571)
T 3cvr_A          189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDP  231 (571)
T ss_dssp             SSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCT
T ss_pred             CCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCC
Confidence            55554 3443 222  33       44444444444 34444444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.40  E-value=1.4e-12  Score=109.74  Aligned_cols=112  Identities=26%  Similarity=0.416  Sum_probs=60.6

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG  159 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~  159 (202)
                      +++.|++++|.+.+..+  +..+++|++|++++|.+++. +. +..+++|+.|++++|.+++. +. +..+++|++|+++
T Consensus       244 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~  317 (466)
T 1o6v_A          244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLY  317 (466)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECC
T ss_pred             CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECc
Confidence            44555555555544222  45555555555555555532 22 45556666666666665532 22 5556666666666


Q ss_pred             cccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702          160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      +|++++..|  +..+++|+.|++++|++++.  ..+.++++|
T Consensus       318 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L  355 (466)
T 1o6v_A          318 FNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNI  355 (466)
T ss_dssp             SSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             CCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCC
Confidence            666664332  55666666666666666633  245555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.37  E-value=1.7e-12  Score=105.04  Aligned_cols=99  Identities=20%  Similarity=0.230  Sum_probs=84.2

Q ss_pred             CCccccceeCCC-----------CCcEEEEEcCC-CCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEe
Q 035702           66 LCLWTGVTCGHR-----------HQRVTELNLSS-QRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLA  133 (202)
Q Consensus        66 ~c~w~gv~c~~~-----------~~~v~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  133 (202)
                      .|.|..|.|...           ..+++.|+|++ |.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+
T Consensus         7 ~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~   86 (347)
T 2ifg_A            7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (347)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             cccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence            388888888764           14589999996 999997778899999999999999999998888999999999999


Q ss_pred             CCCCcCccCcChhccCCCCCcEEEeecccCcc
Q 035702          134 LPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEG  165 (202)
Q Consensus       134 ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g  165 (202)
                      |++|.+++..+..+..++ |+.|++.+|.+..
T Consensus        87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           87 LSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            999999954344455554 9999999999973

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.37  E-value=9.8e-14  Score=113.93  Aligned_cols=91  Identities=22%  Similarity=0.355  Sum_probs=40.1

Q ss_pred             ccCCCCCcEEEccCCcCc--c---cCchhccCCCCCCeEeCCCCcCc----cCcChhccCCCCCcEEEeecccCccc---
Q 035702           99 VGNLSFLRYINLADNGFH--G---EIPQEIGNLLRLEKLALPNNSFS----GTIPTNLSRCSNLIYFHVGNNKLEGQ---  166 (202)
Q Consensus        99 l~~l~~L~~L~l~~n~l~--~---~~p~~~~~l~~L~~L~ls~n~l~----~~~p~~l~~l~~L~~L~l~~n~~~g~---  166 (202)
                      +..+++|++|++++|.++  |   ..+..+..+++|++|++++|.++    +.+|..+..+++|++|++++|.+++.   
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            334444444555444444  1   12223444444555555555443    23444444444555555555544432   


Q ss_pred             -CChhcc--CCCCCceeecccccccc
Q 035702          167 -IPKEIG--SLLKLQTLALYYNYLTR  189 (202)
Q Consensus       167 -~p~~~~--~l~~L~~L~l~~N~l~g  189 (202)
                       +|..+.  ++++|++|++++|.+++
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCH
Confidence             233331  24445555555555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.35  E-value=2.6e-12  Score=104.29  Aligned_cols=101  Identities=18%  Similarity=0.219  Sum_probs=81.5

Q ss_pred             CCccccceeCCCC---------CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCch-hccCCCCCCe-EeC
Q 035702           66 LCLWTGVTCGHRH---------QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQ-EIGNLLRLEK-LAL  134 (202)
Q Consensus        66 ~c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~-L~l  134 (202)
                      .|.+..|.|....         ..+++|++++|+++...+..|.++++|++|++++|.+.+.+|. .|.++++++. +.+
T Consensus         8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X            8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            4788888886421         4689999999999985556789999999999999998766664 5778888775 566


Q ss_pred             CCCcCccCcChhccCCCCCcEEEeecccCccc
Q 035702          135 PNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQ  166 (202)
Q Consensus       135 s~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~  166 (202)
                      ..|+++...|..+..+++|++|++++|++++.
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~  119 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHL  119 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred             cCCcccccCchhhhhccccccccccccccccC
Confidence            77899866677889999999999999988743

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.35  E-value=4.1e-13  Score=116.90  Aligned_cols=120  Identities=20%  Similarity=0.306  Sum_probs=67.0

Q ss_pred             CCCCCCCCCccccce--------eCCCCCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCC
Q 035702           59 SWNNTINLCLWTGVT--------CGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLE  130 (202)
Q Consensus        59 ~W~~~~~~c~w~gv~--------c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~  130 (202)
                      .|....++|.|+|..        |..  ..++.|++++++++. +|..+.  ++|++|++++|.++ .+|.   .+++|+
T Consensus        14 ~W~~~~~~~~~~~r~~~~~~~~~c~~--~~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~   84 (622)
T 3g06_A           14 AWRRAAPAEESRGRAAVVQKMRACLN--NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELR   84 (622)
T ss_dssp             HHHHTCCGGGHHHHHHHHHHHHHHHH--HCCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCC
T ss_pred             HHHhcCCcchhccccccCcccccccC--CCCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC---cCCCCC
Confidence            466666778886542        221  345667777776663 555443  56666666666666 4444   345666


Q ss_pred             eEeCCCCcCccCcChhccCCCCCcEEEeecccCcc-------------------cCChhccCCCCCceeecccccccccc
Q 035702          131 KLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEG-------------------QIPKEIGSLLKLQTLALYYNYLTRQL  191 (202)
Q Consensus       131 ~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g-------------------~~p~~~~~l~~L~~L~l~~N~l~g~i  191 (202)
                      +|++++|.++ .+|.   .+++|++|++++|++++                   .+|..   +++|++|++++|+++ .+
T Consensus        85 ~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~-~l  156 (622)
T 3g06_A           85 TLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA-SL  156 (622)
T ss_dssp             EEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-CC
T ss_pred             EEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCC-Cc
Confidence            6666666665 4444   44555555555555542                   23321   256666666666666 34


Q ss_pred             Chhc
Q 035702          192 PDFI  195 (202)
Q Consensus       192 P~~~  195 (202)
                      |..+
T Consensus       157 ~~~~  160 (622)
T 3g06_A          157 PALP  160 (622)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            4433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.35  E-value=1.1e-13  Score=113.57  Aligned_cols=88  Identities=18%  Similarity=0.262  Sum_probs=43.4

Q ss_pred             CCCcEEEccCCcCc-ccCc---hhccCCCCCCeEeCCCCcCcc-----CcChhccCCCCCcEEEeecccCc----ccCCh
Q 035702          103 SFLRYINLADNGFH-GEIP---QEIGNLLRLEKLALPNNSFSG-----TIPTNLSRCSNLIYFHVGNNKLE----GQIPK  169 (202)
Q Consensus       103 ~~L~~L~l~~n~l~-~~~p---~~~~~l~~L~~L~ls~n~l~~-----~~p~~l~~l~~L~~L~l~~n~~~----g~~p~  169 (202)
                      ++|++|++++|.++ +.++   ..+..+++|++|++++|.++.     ..|..+..+++|++|++++|.++    +.+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            44445555554443 2222   233344555555555555541     12224455555555555555553    34455


Q ss_pred             hccCCCCCceeeccccccccc
Q 035702          170 EIGSLLKLQTLALYYNYLTRQ  190 (202)
Q Consensus       170 ~~~~l~~L~~L~l~~N~l~g~  190 (202)
                      .+..+++|++|++++|.+++.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~  259 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSAR  259 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHH
T ss_pred             HHccCCCcCEEECCCCCCchh
Confidence            555555566666666655543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.34  E-value=5e-12  Score=106.34  Aligned_cols=100  Identities=21%  Similarity=0.229  Sum_probs=46.2

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      ..++.+++++|...+.+  .+..+++|++|++++|.+++ +|  +..+++|+.|++++|.+++.   .++.+++|++|++
T Consensus       148 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~L  219 (457)
T 3bz5_A          148 TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDC  219 (457)
T ss_dssp             TTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEEC
T ss_pred             CcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEEC
Confidence            34455555555333322  24444555555555555543 22  44444455555555544432   2444444444555


Q ss_pred             ecccCcccCChhccCCCCCceeecccccccc
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTR  189 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g  189 (202)
                      ++|++++ +|  +..+++|+.|++++|++++
T Consensus       220 s~N~l~~-ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          220 SSNKLTE-ID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred             cCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence            4444443 33  4444444444444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.32  E-value=2.8e-12  Score=107.81  Aligned_cols=88  Identities=28%  Similarity=0.426  Sum_probs=43.4

Q ss_pred             CCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcc--cCChhccCC------
Q 035702          103 SFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEG--QIPKEIGSL------  174 (202)
Q Consensus       103 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g--~~p~~~~~l------  174 (202)
                      ++|++|++++|.+++ +|..   +++|++|++++|.++ .+|.   .+++|++|++++|++++  .+|..+..+      
T Consensus       317 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~  388 (454)
T 1jl5_A          317 PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHL  388 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--
T ss_pred             CcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccc
Confidence            356666666666663 4432   467777777777777 5665   46778888888888877  677776666      


Q ss_pred             -------CCCceeecccccccc--ccChhccCC
Q 035702          175 -------LKLQTLALYYNYLTR--QLPDFIGNL  198 (202)
Q Consensus       175 -------~~L~~L~l~~N~l~g--~iP~~~~~l  198 (202)
                             ++|++|++++|++++  .+|.++.++
T Consensus       389 ~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L  421 (454)
T 1jl5_A          389 AEVPELPQNLKQLHVETNPLREFPDIPESVEDL  421 (454)
T ss_dssp             ---------------------------------
T ss_pred             cccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence                   678888888888876  777666554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.31  E-value=1.2e-11  Score=103.97  Aligned_cols=109  Identities=28%  Similarity=0.414  Sum_probs=60.4

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.+++ +| .+..+++|++|++++|.+++ +|..   ..+|++|++++|.+++ +| .++++++|++|++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            356666666666665 45 46667777777777776663 4432   2356666666666663 45 4566666666666


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      ++|.+++ +|...   ++|++|++++|.++ .+|. ++++++|
T Consensus       203 ~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L  239 (454)
T 1jl5_A          203 DNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFL  239 (454)
T ss_dssp             CSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTC
T ss_pred             CCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCC
Confidence            6666653 33211   24444444444444 4442 4444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.29  E-value=7.6e-13  Score=107.87  Aligned_cols=116  Identities=21%  Similarity=0.221  Sum_probs=81.0

Q ss_pred             cEEEEEcCCCCCccccCccccCC-----CCCcEEEccCCcCcccCchhc----cCC-CCCCeEeCCCCcCccCcChhc--
Q 035702           80 RVTELNLSSQRIGGILSPYVGNL-----SFLRYINLADNGFHGEIPQEI----GNL-LRLEKLALPNNSFSGTIPTNL--  147 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~p~~~----~~l-~~L~~L~ls~n~l~~~~p~~l--  147 (202)
                      ++++|++++|.+++..+..+..+     ++|++|++++|.+++..+..+    ..+ ++|++|++++|.+++..+..+  
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            68888888888877655555554     788888888888876655543    333 788888888888875544443  


Q ss_pred             --cC-CCCCcEEEeecccCcccC----ChhccCCC-CCceeeccccccccccChhc
Q 035702          148 --SR-CSNLIYFHVGNNKLEGQI----PKEIGSLL-KLQTLALYYNYLTRQLPDFI  195 (202)
Q Consensus       148 --~~-l~~L~~L~l~~n~~~g~~----p~~~~~l~-~L~~L~l~~N~l~g~iP~~~  195 (202)
                        .. .++|++|++++|.+++..    +..+..++ +|++|++++|++++..+..+
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  187 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAEL  187 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHH
Confidence              33 258888888888887533    33445555 88888888888876665443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.28  E-value=7.4e-12  Score=109.02  Aligned_cols=85  Identities=22%  Similarity=0.274  Sum_probs=49.9

Q ss_pred             CCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeec
Q 035702          103 SFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLAL  182 (202)
Q Consensus       103 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l  182 (202)
                      ++|+.|++++|.+++ +|   ..+++|++|++++|.++ .+|.   .+++|++|++++|+++ .+|..+.++++|+.|++
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            345555555555552 33   23455666666666665 4454   4456666666666666 56666666666777777


Q ss_pred             cccccccccChhcc
Q 035702          183 YYNYLTRQLPDFIG  196 (202)
Q Consensus       183 ~~N~l~g~iP~~~~  196 (202)
                      ++|.+++.+|..+.
T Consensus       292 ~~N~l~~~~~~~l~  305 (622)
T 3g06_A          292 EGNPLSERTLQALR  305 (622)
T ss_dssp             CSCCCCHHHHHHHH
T ss_pred             cCCCCCCcCHHHHH
Confidence            77766666655443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.26  E-value=2.2e-12  Score=105.17  Aligned_cols=113  Identities=20%  Similarity=0.215  Sum_probs=92.1

Q ss_pred             CcEEEEEcCCCCCccccC----ccccCCC-CCcEEEccCCcCcccCchhccCC-----CCCCeEeCCCCcCccCcChhc-
Q 035702           79 QRVTELNLSSQRIGGILS----PYVGNLS-FLRYINLADNGFHGEIPQEIGNL-----LRLEKLALPNNSFSGTIPTNL-  147 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~ls~n~l~~~~p~~l-  147 (202)
                      ..++.|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|++|++++|.+++..+..+ 
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            459999999999988655    6678888 89999999999998777777665     999999999999997666544 


Q ss_pred             ---cCC-CCCcEEEeecccCcccCChhc----cC-CCCCceeecccccccccc
Q 035702          148 ---SRC-SNLIYFHVGNNKLEGQIPKEI----GS-LLKLQTLALYYNYLTRQL  191 (202)
Q Consensus       148 ---~~l-~~L~~L~l~~n~~~g~~p~~~----~~-l~~L~~L~l~~N~l~g~i  191 (202)
                         ..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+++..
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  154 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS  154 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence               444 899999999999986655443    34 359999999999998533

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.23  E-value=2.5e-11  Score=98.44  Aligned_cols=110  Identities=13%  Similarity=0.020  Sum_probs=89.4

Q ss_pred             EEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcCh-hccCCCCCcE-EEeec
Q 035702           83 ELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPT-NLSRCSNLIY-FHVGN  160 (202)
Q Consensus        83 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~L~~-L~l~~  160 (202)
                      .++.++++++. +|..+  .+++++|++++|.++...+..|.++++|++|+|++|.+.+.+|. .+.+++++.. +.+..
T Consensus        13 ~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            57888999886 67655  36899999999999944445789999999999999998767774 5788988775 66777


Q ss_pred             ccCcccCChhccCCCCCceeeccccccccccChhc
Q 035702          161 NKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFI  195 (202)
Q Consensus       161 n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~  195 (202)
                      |+++...|..+..+++|++|++++|++++..+..+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~  124 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK  124 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhh
Confidence            99996667789999999999999999985444433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.22  E-value=7.2e-13  Score=110.74  Aligned_cols=123  Identities=21%  Similarity=0.177  Sum_probs=57.4

Q ss_pred             CcEEEEEcCCCCCccc----cCccccCCCCCcEEEccCCcCcccCchhccC-----CCCCCeEeCCCCcCccC----cCh
Q 035702           79 QRVTELNLSSQRIGGI----LSPYVGNLSFLRYINLADNGFHGEIPQEIGN-----LLRLEKLALPNNSFSGT----IPT  145 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-----l~~L~~L~ls~n~l~~~----~p~  145 (202)
                      .+++.|++++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++.    ++.
T Consensus       256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  335 (461)
T 1z7x_W          256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS  335 (461)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence            3455556665555542    3344444555666666665554332222211     13455555555555432    333


Q ss_pred             hccCCCCCcEEEeecccCcccCChhccC-----CCCCceeecccccccc----ccChhccCCCCC
Q 035702          146 NLSRCSNLIYFHVGNNKLEGQIPKEIGS-----LLKLQTLALYYNYLTR----QLPDFIGNLSAL  201 (202)
Q Consensus       146 ~l~~l~~L~~L~l~~n~~~g~~p~~~~~-----l~~L~~L~l~~N~l~g----~iP~~~~~l~~L  201 (202)
                      .+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++    .+|..+..+++|
T Consensus       336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L  400 (461)
T 1z7x_W          336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL  400 (461)
T ss_dssp             HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred             HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence            4444455555555555554332222221     3455555555555553    444444444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.14  E-value=2.3e-12  Score=107.69  Aligned_cols=112  Identities=16%  Similarity=0.167  Sum_probs=90.4

Q ss_pred             CcEEEEEcCCCCCccccCcccc-----CCCCCcEEEccCCcCccc----CchhccCCCCCCeEeCCCCcCccCcChhccC
Q 035702           79 QRVTELNLSSQRIGGILSPYVG-----NLSFLRYINLADNGFHGE----IPQEIGNLLRLEKLALPNNSFSGTIPTNLSR  149 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~  149 (202)
                      ..++.|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+..
T Consensus       284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  363 (461)
T 1z7x_W          284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ  363 (461)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred             CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH
Confidence            5789999999998764333332     236899999999999865    4566777899999999999998665554432


Q ss_pred             -----CCCCcEEEeecccCcc----cCChhccCCCCCceeeccccccccc
Q 035702          150 -----CSNLIYFHVGNNKLEG----QIPKEIGSLLKLQTLALYYNYLTRQ  190 (202)
Q Consensus       150 -----l~~L~~L~l~~n~~~g----~~p~~~~~l~~L~~L~l~~N~l~g~  190 (202)
                           .++|++|++++|.+++    .+|..+..+++|++|++++|++++.
T Consensus       364 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          364 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             HHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence                 6799999999999986    6788888899999999999999854

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=99.06  E-value=7.5e-12  Score=97.97  Aligned_cols=67  Identities=25%  Similarity=0.363  Sum_probs=52.9

Q ss_pred             cCCCCCCeEeCCCCcCcc--CcChhccCCCCCcEEEeecccCcccCChhccCCC--CCceeeccccccccccC
Q 035702          124 GNLLRLEKLALPNNSFSG--TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLL--KLQTLALYYNYLTRQLP  192 (202)
Q Consensus       124 ~~l~~L~~L~ls~n~l~~--~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~--~L~~L~l~~N~l~g~iP  192 (202)
                      .++++|+.|+|++|.+++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|++|++++|.+++.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            457889999999999986  5566777889999999999999853  3344444  89999999999987776

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.97  E-value=1.3e-10  Score=95.33  Aligned_cols=111  Identities=17%  Similarity=0.279  Sum_probs=64.9

Q ss_pred             cEEEEEcCCCCCccccCccc-----cCCCCCcEEEccCCcCccc----CchhccCCCCCCeEeCCCCcCccC----cChh
Q 035702           80 RVTELNLSSQRIGGILSPYV-----GNLSFLRYINLADNGFHGE----IPQEIGNLLRLEKLALPNNSFSGT----IPTN  146 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~  146 (202)
                      +++.|++++|.++..-...+     ...++|++|++++|.++..    ++..+...++|++|+|++|.+++.    ++..
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~  206 (372)
T 3un9_A          127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ  206 (372)
T ss_dssp             TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred             hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence            35556666665543222222     2345677777777776532    333445566777777777776642    2445


Q ss_pred             ccCCCCCcEEEeecccCccc----CChhccCCCCCceeeccccccccc
Q 035702          147 LSRCSNLIYFHVGNNKLEGQ----IPKEIGSLLKLQTLALYYNYLTRQ  190 (202)
Q Consensus       147 l~~l~~L~~L~l~~n~~~g~----~p~~~~~l~~L~~L~l~~N~l~g~  190 (202)
                      +...++|++|++++|.++..    ++..+...++|++|++++|.++..
T Consensus       207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            55666777777777777632    233344556777777777777644

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.91  E-value=1.3e-10  Score=95.21  Aligned_cols=111  Identities=17%  Similarity=0.205  Sum_probs=84.2

Q ss_pred             CcEEEEEcCCCCCccccCccc-cCCCCCcEEEccCCcCcccCchhc-----cCCCCCCeEeCCCCcCcc----CcChhcc
Q 035702           79 QRVTELNLSSQRIGGILSPYV-GNLSFLRYINLADNGFHGEIPQEI-----GNLLRLEKLALPNNSFSG----TIPTNLS  148 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~ls~n~l~~----~~p~~l~  148 (202)
                      ..+++|++++|.++..-...+ ..+.+|++|++++|.++......+     ...++|++|++++|.++.    .++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            579999999999875433222 245678999999999875444333     346789999999999874    2445567


Q ss_pred             CCCCCcEEEeecccCccc----CChhccCCCCCceeecccccccc
Q 035702          149 RCSNLIYFHVGNNKLEGQ----IPKEIGSLLKLQTLALYYNYLTR  189 (202)
Q Consensus       149 ~l~~L~~L~l~~n~~~g~----~p~~~~~l~~L~~L~l~~N~l~g  189 (202)
                      ..++|++|+|++|.+++.    ++..+...++|++|++++|.++.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            889999999999998742    34566777899999999999974

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.79  E-value=1.3e-09  Score=93.64  Aligned_cols=35  Identities=20%  Similarity=0.280  Sum_probs=20.0

Q ss_pred             CChhccCCCCCceeeccccccccccC-hhccCCCCC
Q 035702          167 IPKEIGSLLKLQTLALYYNYLTRQLP-DFIGNLSAL  201 (202)
Q Consensus       167 ~p~~~~~l~~L~~L~l~~N~l~g~iP-~~~~~l~~L  201 (202)
                      +|..+..+++|++|++++|.+++... ..+..+++|
T Consensus       285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L  320 (592)
T 3ogk_B          285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL  320 (592)
T ss_dssp             GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred             HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence            44445566677777777777654433 234555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.75  E-value=4.3e-10  Score=96.66  Aligned_cols=122  Identities=10%  Similarity=0.113  Sum_probs=73.8

Q ss_pred             CcEEEEEcCCCCCccccCccccC-C-CCCcEEEccCCc-Ccc-cCchhccCCCCCCeEeCCCCcCccC----cChhccCC
Q 035702           79 QRVTELNLSSQRIGGILSPYVGN-L-SFLRYINLADNG-FHG-EIPQEIGNLLRLEKLALPNNSFSGT----IPTNLSRC  150 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~-l-~~L~~L~l~~n~-l~~-~~p~~~~~l~~L~~L~ls~n~l~~~----~p~~l~~l  150 (202)
                      .++++|+++++.+++..+..+.. + .+|++|++++|. ++. .++.....+++|++|++++|.+++.    ++.....+
T Consensus       112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~  191 (592)
T 3ogk_B          112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN  191 (592)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred             CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence            45777888877776554444443 2 237777777665 211 1222233567777777777776654    33344566


Q ss_pred             CCCcEEEeecccCc----ccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702          151 SNLIYFHVGNNKLE----GQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       151 ~~L~~L~l~~n~~~----g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      ++|++|++++|.++    +.++..+.++++|+.|++++|.+.+ +|..+.++++|
T Consensus       192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L  245 (592)
T 3ogk_B          192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANL  245 (592)
T ss_dssp             CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTC
T ss_pred             CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHH
Confidence            77777777777776    2334445567777777777777763 55555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.75  E-value=7.6e-09  Score=80.90  Aligned_cols=80  Identities=20%  Similarity=0.238  Sum_probs=65.9

Q ss_pred             cCCCCCcEEEccCCcCcc--cCchhccCCCCCCeEeCCCCcCccCcChhccCCC--CCcEEEeecccCcccCCh------
Q 035702          100 GNLSFLRYINLADNGFHG--EIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCS--NLIYFHVGNNKLEGQIPK------  169 (202)
Q Consensus       100 ~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~--~L~~L~l~~n~~~g~~p~------  169 (202)
                      ..+++|+.|+|++|.+++  .+|..+..+++|+.|+|++|.+++.  ..+..+.  +|++|+|.+|.+.+.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            357899999999999997  5567777899999999999999954  3344444  999999999999987763      


Q ss_pred             -hccCCCCCceee
Q 035702          170 -EIGSLLKLQTLA  181 (202)
Q Consensus       170 -~~~~l~~L~~L~  181 (202)
                       .+..+|+|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             367889999987

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.69  E-value=4e-09  Score=78.05  Aligned_cols=110  Identities=14%  Similarity=0.192  Sum_probs=86.8

Q ss_pred             CcEEEEEcCCC-CCccc----cCccccCCCCCcEEEccCCcCccc----CchhccCCCCCCeEeCCCCcCccC----cCh
Q 035702           79 QRVTELNLSSQ-RIGGI----LSPYVGNLSFLRYINLADNGFHGE----IPQEIGNLLRLEKLALPNNSFSGT----IPT  145 (202)
Q Consensus        79 ~~v~~L~l~~~-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~  145 (202)
                      ..+++|++++| .+...    +...+...++|++|++++|.+...    +...+...++|++|+|++|.++..    +..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            67899999999 88742    345567778999999999999743    334455668999999999999853    456


Q ss_pred             hccCCCCCcEEEe--ecccCccc----CChhccCCCCCceeeccccccc
Q 035702          146 NLSRCSNLIYFHV--GNNKLEGQ----IPKEIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       146 ~l~~l~~L~~L~l--~~n~~~g~----~p~~~~~l~~L~~L~l~~N~l~  188 (202)
                      .+...++|++|++  ++|.++..    +...+...+.|++|++++|.+.
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            6777889999999  88999743    3345566789999999999885

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.67  E-value=7.7e-08  Score=77.12  Aligned_cols=99  Identities=13%  Similarity=0.080  Sum_probs=82.9

Q ss_pred             CCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCc-EEEeecccCcccCChhccCCCCCcee
Q 035702          102 LSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLI-YFHVGNNKLEGQIPKEIGSLLKLQTL  180 (202)
Q Consensus       102 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~-~L~l~~n~~~g~~p~~~~~l~~L~~L  180 (202)
                      +++|+.+++++|.++..-+..|.++++|+.+++.+| ++..-+..|.++++|+ .+++.+ .++..-+..|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            789999999999999555567999999999999998 7744446789999999 999988 6763445689999999999


Q ss_pred             eccccccccccChhccCCCCCC
Q 035702          181 ALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       181 ~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++++|.++..-+..|.++++|+
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~  324 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSK  324 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCC
T ss_pred             EeCCCccCccchhhhcCCcchh
Confidence            9999999855556898998875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.62  E-value=3.9e-09  Score=90.65  Aligned_cols=122  Identities=13%  Similarity=0.192  Sum_probs=84.1

Q ss_pred             CcEEEEEcCCCCCccccCcccc-CCCCCcEEEccCC-cCccc-CchhccCCCCCCeEeCCCCcCccCcChhc----cCCC
Q 035702           79 QRVTELNLSSQRIGGILSPYVG-NLSFLRYINLADN-GFHGE-IPQEIGNLLRLEKLALPNNSFSGTIPTNL----SRCS  151 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L~ls~n~l~~~~p~~l----~~l~  151 (202)
                      .++++|+++++.+++..+..+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+    ..++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            5788999999988876665564 6889999999988 55532 34444578899999999998876544433    3667


Q ss_pred             CCcEEEeeccc--Ccc-cCChhccCCCCCceeecccc-ccccccChhccCCCCC
Q 035702          152 NLIYFHVGNNK--LEG-QIPKEIGSLLKLQTLALYYN-YLTRQLPDFIGNLSAL  201 (202)
Q Consensus       152 ~L~~L~l~~n~--~~g-~~p~~~~~l~~L~~L~l~~N-~l~g~iP~~~~~l~~L  201 (202)
                      +|++|++++|.  ++. .++....++++|++|++++| .+. .+|..+.++++|
T Consensus       185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L  237 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQL  237 (594)
T ss_dssp             CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTC
T ss_pred             cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcc
Confidence            89999998886  221 11222345688899998887 343 356555555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.61  E-value=1.3e-07  Score=75.87  Aligned_cols=102  Identities=20%  Similarity=0.199  Sum_probs=86.8

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCC-eEeCCCCcCccCcChhccCCCCCcEEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLE-KLALPNNSFSGTIPTNLSRCSNLIYFH  157 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~-~L~ls~n~l~~~~p~~l~~l~~L~~L~  157 (202)
                      ..++.+++++|+++......|..+.+|+.+++.+| ++..-+..|.++++|+ .+++.+ .++..-+..|.++++|+.++
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence            57899999999999866678999999999999998 7745567899999999 999998 77744458899999999999


Q ss_pred             eecccCcccCChhccCCCCCceeec
Q 035702          158 VGNNKLEGQIPKEIGSLLKLQTLAL  182 (202)
Q Consensus       158 l~~n~~~g~~p~~~~~l~~L~~L~l  182 (202)
                      +.+|.++..-+..|.++++|+.++.
T Consensus       304 l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          304 ATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             eCCCccCccchhhhcCCcchhhhcc
Confidence            9999998444557899999998863

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.51  E-value=6.7e-09  Score=89.19  Aligned_cols=86  Identities=15%  Similarity=0.161  Sum_probs=40.9

Q ss_pred             CCCCcEEEccCCcCcccCchhccC-CCCCCeEeCCCCcCccCcChhc-cCCCCCcEEEeecccCcccCCh-hccCCCCCc
Q 035702          102 LSFLRYINLADNGFHGEIPQEIGN-LLRLEKLALPNNSFSGTIPTNL-SRCSNLIYFHVGNNKLEGQIPK-EIGSLLKLQ  178 (202)
Q Consensus       102 l~~L~~L~l~~n~l~~~~p~~~~~-l~~L~~L~ls~n~l~~~~p~~l-~~l~~L~~L~l~~n~~~g~~p~-~~~~l~~L~  178 (202)
                      +++|++|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+. ....+++|+
T Consensus       431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  509 (594)
T 2p1m_B          431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR  509 (594)
T ss_dssp             CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred             CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence            34444444433 333222223332 4555555555555554333333 4455666666666665432222 223455666


Q ss_pred             eeeccccccc
Q 035702          179 TLALYYNYLT  188 (202)
Q Consensus       179 ~L~l~~N~l~  188 (202)
                      +|++++|+++
T Consensus       510 ~L~l~~~~~~  519 (594)
T 2p1m_B          510 SLWMSSCSVS  519 (594)
T ss_dssp             EEEEESSCCB
T ss_pred             EEeeeCCCCC
Confidence            6666666554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.40  E-value=5e-08  Score=72.06  Aligned_cols=96  Identities=16%  Similarity=0.138  Sum_probs=75.2

Q ss_pred             cCccccCCCCCcEEEccCC-cCccc----CchhccCCCCCCeEeCCCCcCccC----cChhccCCCCCcEEEeecccCcc
Q 035702           95 LSPYVGNLSFLRYINLADN-GFHGE----IPQEIGNLLRLEKLALPNNSFSGT----IPTNLSRCSNLIYFHVGNNKLEG  165 (202)
Q Consensus        95 ~~~~l~~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~g  165 (202)
                      +...+...+.|++|++++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.++.
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            4455677899999999999 88642    344566778999999999999853    34455666899999999999974


Q ss_pred             c----CChhccCCCCCceeec--cccccccc
Q 035702          166 Q----IPKEIGSLLKLQTLAL--YYNYLTRQ  190 (202)
Q Consensus       166 ~----~p~~~~~l~~L~~L~l--~~N~l~g~  190 (202)
                      .    +...+...+.|++|++  ++|.++..
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence            3    3456777889999999  88998743

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.24  E-value=6.3e-07  Score=65.56  Aligned_cols=84  Identities=12%  Similarity=0.167  Sum_probs=53.6

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCc-CcccCchhccCC----CCCCeEeCCCCc-CccCcChhccCCCC
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNG-FHGEIPQEIGNL----LRLEKLALPNNS-FSGTIPTNLSRCSN  152 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~ls~n~-l~~~~p~~l~~l~~  152 (202)
                      -++++|+++++.++..--..+..+++|++|+++++. ++..--..+..+    ++|++|+++++. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            357777777777665444556677777777777773 554433444443    357777777763 66544455666777


Q ss_pred             CcEEEeeccc
Q 035702          153 LIYFHVGNNK  162 (202)
Q Consensus       153 L~~L~l~~n~  162 (202)
                      |++|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777777764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.22  E-value=6e-07  Score=73.19  Aligned_cols=108  Identities=17%  Similarity=0.211  Sum_probs=60.8

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhcc--CCCCCCeEeCCC--CcCccC-----cChhc--
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIG--NLLRLEKLALPN--NSFSGT-----IPTNL--  147 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~L~ls~--n~l~~~-----~p~~l--  147 (202)
                      +++++|+++++.- -.+++ + ..++|++|++..+.++......+.  .+++|+.|+|+.  |...+.     +...+  
T Consensus       172 P~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~  248 (362)
T 2ra8_A          172 PLLNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK  248 (362)
T ss_dssp             TTCCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred             CCCcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence            5678888877621 11232 3 266777777777766543333333  567777777642  211111     11112  


Q ss_pred             cCCCCCcEEEeecccCcccCChhcc---CCCCCceeecccccccc
Q 035702          148 SRCSNLIYFHVGNNKLEGQIPKEIG---SLLKLQTLALYYNYLTR  189 (202)
Q Consensus       148 ~~l~~L~~L~l~~n~~~g~~p~~~~---~l~~L~~L~l~~N~l~g  189 (202)
                      ..+++|++|++.+|.+.+..+..+.   .+++|++|+++.|.+++
T Consensus       249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            2467777777777777643333332   46677777777777764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.19  E-value=2.4e-07  Score=75.59  Aligned_cols=111  Identities=13%  Similarity=0.185  Sum_probs=78.2

Q ss_pred             CcEEEEEcCCCCCccccCcccc--CCCCCcEEEccC--CcCccc-----Cchhc--cCCCCCCeEeCCCCcCccCcChhc
Q 035702           79 QRVTELNLSSQRIGGILSPYVG--NLSFLRYINLAD--NGFHGE-----IPQEI--GNLLRLEKLALPNNSFSGTIPTNL  147 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~--~l~~L~~L~l~~--n~l~~~-----~p~~~--~~l~~L~~L~ls~n~l~~~~p~~l  147 (202)
                      .+++.|++..+.+.......+.  .+++|++|+|+.  |...+.     +...+  ..+++|++|++.+|.+.+..+..+
T Consensus       193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l  272 (362)
T 2ra8_A          193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF  272 (362)
T ss_dssp             TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred             CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence            5788999988877654333343  689999999863  221111     11122  357999999999999886444333


Q ss_pred             ---cCCCCCcEEEeecccCccc----CChhccCCCCCceeecccccccc
Q 035702          148 ---SRCSNLIYFHVGNNKLEGQ----IPKEIGSLLKLQTLALYYNYLTR  189 (202)
Q Consensus       148 ---~~l~~L~~L~l~~n~~~g~----~p~~~~~l~~L~~L~l~~N~l~g  189 (202)
                         ..+++|++|+|+.|.+++.    ++..+.++++|+.|++++|.++.
T Consensus       273 a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence               3578999999999999853    33444567899999999998874

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.17  E-value=1.3e-06  Score=63.82  Aligned_cols=94  Identities=13%  Similarity=0.024  Sum_probs=71.5

Q ss_pred             cCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCc-CccCcChhccCC----CCCcEEEeeccc-CcccCC
Q 035702           95 LSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNS-FSGTIPTNLSRC----SNLIYFHVGNNK-LEGQIP  168 (202)
Q Consensus        95 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~-l~~~~p~~l~~l----~~L~~L~l~~n~-~~g~~p  168 (202)
                      +|.....-..|+.||++++.++..--..+..+++|+.|+|+++. +++.--..++.+    ++|++|++++|. ++..--
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            34333233469999999999986666678899999999999995 776555566664    479999999985 774333


Q ss_pred             hhccCCCCCceeeccccc-cc
Q 035702          169 KEIGSLLKLQTLALYYNY-LT  188 (202)
Q Consensus       169 ~~~~~l~~L~~L~l~~N~-l~  188 (202)
                      ..+.++++|++|+++++. ++
T Consensus       133 ~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          133 IALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HHGGGCTTCCEEEEESCTTCC
T ss_pred             HHHhcCCCCCEEECCCCCCCC
Confidence            457789999999999874 54

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.96  E-value=4e-05  Score=63.16  Aligned_cols=115  Identities=10%  Similarity=0.045  Sum_probs=78.3

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCc-----ccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCc
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFH-----GEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLI  154 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~  154 (202)
                      .++.+.+ .++++..-...|..+++|+.+++.+|.+.     ..-+..|.++++|+.+++.+ .++..-...|.++++|+
T Consensus       249 ~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          249 GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred             CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence            3455555 23444444566788888999888887664     23345678888899998884 46633346778889999


Q ss_pred             EEEeecccCcccCChhccCCCCCceeeccccccccccChhccCC
Q 035702          155 YFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNL  198 (202)
Q Consensus       155 ~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l  198 (202)
                      .+.+..| ++..-+..|.++ +|+.+++.+|.+....+..|..+
T Consensus       327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~  368 (401)
T 4fdw_A          327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF  368 (401)
T ss_dssp             EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred             EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence            9999655 552334567788 89999999988764444555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.85  E-value=0.00013  Score=60.13  Aligned_cols=55  Identities=11%  Similarity=0.080  Sum_probs=26.4

Q ss_pred             hccCCCCCcEEEeecccCc-----ccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702          146 NLSRCSNLIYFHVGNNKLE-----GQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL  201 (202)
Q Consensus       146 ~l~~l~~L~~L~l~~n~~~-----g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L  201 (202)
                      .|.++++|+.+++.+|.+.     ..-+..|..+++|+.+++.. .++..-...|.++++|
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L  325 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV  325 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence            4455555666666555443     11123455556666666652 3442223445555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.24  E-value=0.00073  Score=46.66  Aligned_cols=56  Identities=14%  Similarity=0.109  Sum_probs=38.2

Q ss_pred             EEEcCCCCCc-cccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCc
Q 035702           83 ELNLSSQRIG-GILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS  140 (202)
Q Consensus        83 ~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~  140 (202)
                      .++.++++++ ..+|..+.  ++|++|+|++|.++..-+..|..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5677777776 23554432  45788888888888444455677788888888887664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.20  E-value=0.00076  Score=46.57  Aligned_cols=57  Identities=19%  Similarity=0.341  Sum_probs=44.1

Q ss_pred             cEEEccCCcCc-ccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCc
Q 035702          106 RYINLADNGFH-GEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLE  164 (202)
Q Consensus       106 ~~L~l~~n~l~-~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~  164 (202)
                      ..++-+++.++ ..+|..+.  ++|++|+|++|.++..-+..+..+++|++|+|.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36788888886 46675443  57999999999999433456788999999999999874

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.05  E-value=0.00025  Score=52.64  Aligned_cols=110  Identities=15%  Similarity=0.178  Sum_probs=77.5

Q ss_pred             CcEEEEEcCCC-CCccc----cCccccCCCCCcEEEccCCcCcccC----chhccCCCCCCeEeCCCCcCccC----cCh
Q 035702           79 QRVTELNLSSQ-RIGGI----LSPYVGNLSFLRYINLADNGFHGEI----PQEIGNLLRLEKLALPNNSFSGT----IPT  145 (202)
Q Consensus        79 ~~v~~L~l~~~-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----p~~~~~l~~L~~L~ls~n~l~~~----~p~  145 (202)
                      ..+++|+|+++ .+...    +-+.+..-+.|+.|+|++|.+...-    ...+..-+.|+.|+|+.|.++..    +-+
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            57899999985 76532    3345666788999999999997432    23344558899999999999853    234


Q ss_pred             hccCCCCCcEEEeecc---cCcc----cCChhccCCCCCceeeccccccc
Q 035702          146 NLSRCSNLIYFHVGNN---KLEG----QIPKEIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       146 ~l~~l~~L~~L~l~~n---~~~g----~~p~~~~~l~~L~~L~l~~N~l~  188 (202)
                      .+..-+.|++|+|++|   .+..    .+.+.+..-+.|+.|+++.|...
T Consensus       121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            4555678999999865   3332    13344556678999999877653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.87  E-value=0.007  Score=48.83  Aligned_cols=85  Identities=15%  Similarity=0.128  Sum_probs=49.2

Q ss_pred             ccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccC-ChhccCCC
Q 035702           97 PYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQI-PKEIGSLL  175 (202)
Q Consensus        97 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~-p~~~~~l~  175 (202)
                      ..+.....|+.+.+..+ +...-...|.++++|+.+.+.++.++..-...|.++.+|+.+.+..+ ++ .+ ...|.++.
T Consensus       257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~  333 (379)
T 4h09_A          257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCK  333 (379)
T ss_dssp             TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCT
T ss_pred             cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCC
Confidence            34455556666666443 33222345666777777777766666323355677777777777544 43 23 23566677


Q ss_pred             CCceeeccc
Q 035702          176 KLQTLALYY  184 (202)
Q Consensus       176 ~L~~L~l~~  184 (202)
                      +|+.+.+..
T Consensus       334 ~L~~i~ip~  342 (379)
T 4h09_A          334 ALSTISYPK  342 (379)
T ss_dssp             TCCCCCCCT
T ss_pred             CCCEEEECC
Confidence            777776644

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.84  E-value=0.0027  Score=51.74  Aligned_cols=100  Identities=14%  Similarity=0.085  Sum_probs=67.8

Q ss_pred             cccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCC
Q 035702           98 YVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKL  177 (202)
Q Consensus        98 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L  177 (202)
                      .+..+.+|+.+.+.++ ++..-...|.++.+|+.+++..+ ++..-...|.++.+|+.+++..+ ++..-...|.++.+|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            3556677777777654 44233456778888999888754 55233467888899999988766 552223568888899


Q ss_pred             ceeeccccccccccChhccCCCCCC
Q 035702          178 QTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       178 ~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      +.+++..+ ++ .+...|.++++|+
T Consensus       369 ~~i~lp~~-~~-~~~~~F~~c~~L~  391 (394)
T 4fs7_A          369 KKVELPKR-LE-QYRYDFEDTTKFK  391 (394)
T ss_dssp             CEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred             CEEEECCC-CE-EhhheecCCCCCc
Confidence            99988765 33 3455677777653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.76  E-value=0.012  Score=47.96  Aligned_cols=86  Identities=12%  Similarity=0.208  Sum_probs=56.1

Q ss_pred             cccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCC-hhccCCCC
Q 035702           98 YVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIP-KEIGSLLK  176 (202)
Q Consensus        98 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p-~~~~~l~~  176 (202)
                      .|..++.|+.+.+.. .++..-...|.++.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++ .+. ..|.++.+
T Consensus       283 aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~  358 (394)
T 4gt6_A          283 AFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTA  358 (394)
T ss_dssp             TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTT
T ss_pred             ccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCC
Confidence            455666777777753 344233446777788888888754 44233456778888888888654 54 343 46778888


Q ss_pred             Cceeecccccc
Q 035702          177 LQTLALYYNYL  187 (202)
Q Consensus       177 L~~L~l~~N~l  187 (202)
                      |+.+++.+|..
T Consensus       359 L~~i~~~~~~~  369 (394)
T 4gt6_A          359 LNNIEYSGSRS  369 (394)
T ss_dssp             CCEEEESSCHH
T ss_pred             CCEEEECCcee
Confidence            88888877654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.73  E-value=0.013  Score=47.22  Aligned_cols=103  Identities=20%  Similarity=0.118  Sum_probs=69.9

Q ss_pred             ccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCC
Q 035702           97 PYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLK  176 (202)
Q Consensus        97 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~  176 (202)
                      ..+.....|+.+.+..+ ++..-...+.+..+|+.+.+..+ ++..-...+.++++|+.+.+.++.++..-...|.++.+
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~  311 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK  311 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred             ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence            34566677777777665 44233456677788888888654 44233356788999999999988887333457888999


Q ss_pred             CceeeccccccccccChhccCCCCCC
Q 035702          177 LQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       177 L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      |+.+.+..+ ++..-...|.++++|+
T Consensus       312 L~~i~lp~~-l~~I~~~aF~~C~~L~  336 (379)
T 4h09_A          312 LSSVTLPTA-LKTIQVYAFKNCKALS  336 (379)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             CCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence            999999754 5522235677777664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.66  E-value=0.0012  Score=49.03  Aligned_cols=88  Identities=15%  Similarity=0.151  Sum_probs=64.8

Q ss_pred             cccCCCCCcEEEccCC-cCccc----CchhccCCCCCCeEeCCCCcCccC----cChhccCCCCCcEEEeecccCccc--
Q 035702           98 YVGNLSFLRYINLADN-GFHGE----IPQEIGNLLRLEKLALPNNSFSGT----IPTNLSRCSNLIYFHVGNNKLEGQ--  166 (202)
Q Consensus        98 ~l~~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~g~--  166 (202)
                      .+..-+.|++|++++| .+...    +-..+..-+.|+.|+|++|.+...    +-+.+..-+.|++|+|+.|.|...  
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3455678999999986 77532    334566678999999999999853    334445568999999999999743  


Q ss_pred             --CChhccCCCCCceeecccc
Q 035702          167 --IPKEIGSLLKLQTLALYYN  185 (202)
Q Consensus       167 --~p~~~~~l~~L~~L~l~~N  185 (202)
                        +-+.+..-..|+.|+|++|
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHhhCCceeEEECCCC
Confidence              2334556667999999865

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.46  E-value=0.02  Score=46.52  Aligned_cols=101  Identities=12%  Similarity=0.191  Sum_probs=73.2

Q ss_pred             ccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCC
Q 035702           97 PYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLK  176 (202)
Q Consensus        97 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~  176 (202)
                      ..|..+..|+.+.+.++..+ .-...|.++++|+.+.+.. .++..-...|.++.+|+.+++..+ ++..-...|.++.+
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            35677788999988776544 4455678889999999974 455233366889999999999765 54222356889999


Q ss_pred             Cceeecccccccccc-ChhccCCCCCC
Q 035702          177 LQTLALYYNYLTRQL-PDFIGNLSALE  202 (202)
Q Consensus       177 L~~L~l~~N~l~g~i-P~~~~~l~~L~  202 (202)
                      |+.+.+..+ ++ .| ...|.++++|+
T Consensus       336 L~~i~ip~s-v~-~I~~~aF~~C~~L~  360 (394)
T 4gt6_A          336 LERIAIPSS-VT-KIPESAFSNCTALN  360 (394)
T ss_dssp             CCEEEECTT-CC-BCCGGGGTTCTTCC
T ss_pred             CCEEEECcc-cC-EEhHhHhhCCCCCC
Confidence            999999654 65 44 46788888875

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.29  E-value=0.03  Score=45.45  Aligned_cols=104  Identities=20%  Similarity=0.165  Sum_probs=61.5

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcC-------------------
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSF-------------------  139 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l-------------------  139 (202)
                      ..++++.+.. .++..-...|..+++|+.+++.++ ++..-...|.++.+|+.+.+..+--                   
T Consensus        71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~  148 (394)
T 4fs7_A           71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPE  148 (394)
T ss_dssp             TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCT
T ss_pred             CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCc
Confidence            4688888864 466544566888899999998765 4423334566666666655543210                   


Q ss_pred             --ccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeecccc
Q 035702          140 --SGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYN  185 (202)
Q Consensus       140 --~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N  185 (202)
                        ...-...+.++++|+.+.+.++..+ .-...+.++.+|+.+++..|
T Consensus       149 ~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          149 GVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             TCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT
T ss_pred             cccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC
Confidence              0011234667777888887655332 22235666777777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-04

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 73.2 bits (178), Expect = 3e-16
 Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 8/173 (4%)

Query: 36  NETDRLALLTIKSQLHDPSGVTSSWNNTINLC--LWTGVTC--GHRHQRVTELNLSSQRI 91
           N  D+ ALL IK  L +P+   SSW  T + C   W GV C    +  RV  L+LS   +
Sbjct: 4   NPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62

Query: 92  GGI--LSPYVGNLSFLRYINLADN-GFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLS 148
                +   + NL +L ++ +       G IP  I  L +L  L + + + SG IP  LS
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122

Query: 149 RCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
           +   L+      N L G +P  I SL  L  +    N ++  +PD  G+ S L
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.7 bits (117), Expect = 4e-08
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 60  WNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEI 119
             +     L   +      + +  L+L + RI G L   +  L FL  +N++ N   GEI
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 120 PQEIGNLLRLEKLALPNNSFSGTIPTNLSRCS 151
           P + GNL R +  A  NN      P  L  C+
Sbjct: 285 P-QGGNLQRFDVSAYANNKCLCGSP--LPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.3 bits (108), Expect = 7e-07
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 103 SFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNK 162
             L  ++L +N  +G +PQ +  L  L  L +  N+  G IP               NNK
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

Query: 163 LEGQIP 168
                P
Sbjct: 303 CLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.8 bits (99), Expect = 1e-05
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 150 CSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
             NL    + NN++ G +P+ +  L  L +L + +N L  ++P   GNL   +
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFD 294

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.4 bits (119), Expect = 3e-08
 Identities = 23/145 (15%), Positives = 40/145 (27%), Gaps = 10/145 (6%)

Query: 67  CLWTGVTCGHRH---------QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHG 117
           C    V C                  L+L + +I  I      NL  L  + L +N    
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 118 EIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKL 177
             P     L++LE+L L  N               L        K+   +   +  ++ +
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 178 QTLALYYNYLTRQLPDFIGNLSALE 202
           + L       +         +  L 
Sbjct: 130 E-LGTNPLKSSGIENGAFQGMKKLS 153

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 4e-08
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)

Query: 101 NLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGN 160
           NL  L Y+ L  N      P  + +L +L++L   NN  S    ++L+  +N+ +   G+
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 161 NKLEGQIPKEIGSLLKLQTLALYYN 185
           N++    P  + +L ++  L L   
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 33/156 (21%), Positives = 59/156 (37%), Gaps = 28/156 (17%)

Query: 67  CLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNL 126
              + +T       + EL+L+  ++  I    + +L+ L  ++LA+N      P  +  L
Sbjct: 207 NQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGL 262

Query: 127 LRLEKLALPNNSFSGTIP--------------------TNLSRCSNLIYFHVGNNKLEGQ 166
            +L +L L  N  S   P                    + +S   NL Y  +  N +   
Sbjct: 263 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 322

Query: 167 IPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
            P  + SL KLQ L    N ++      + NL+ + 
Sbjct: 323 SP--VSSLTKLQRLFFANNKVSD--VSSLANLTNIN 354

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 6e-05
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 9/96 (9%)

Query: 112 DNGFHGEIPQEIGNLLRLEKLALPNNSFSGT----IPTNLSRCSNLIYFHVGNNKLEGQI 167
           D G              L  L L +   S +    +   L    +L    + NN L    
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 168 PKEIGSLLK-----LQTLALYYNYLTRQLPDFIGNL 198
             ++   ++     L+ L LY  Y + ++ D +  L
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 4e-04
 Identities = 11/88 (12%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 105 LRYINLADNGFHGEIPQEIGNLLR-LEKLALPNNSFSG----TIPTNLSRCSNLIYFHVG 159
           ++ +++           E+  LL+  + + L +   +      I + L     L   ++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 160 NNKLEGQIPKEIGSLLKLQTLALYYNYL 187
           +N+L       +   L+  +  +    L
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (82), Expect = 0.002
 Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 9/85 (10%)

Query: 101 NLSFLRYINLADNGFHGEIPQEIGNLLR----LEKLALPNNSFSGTIPTNLSR-----CS 151
             S LR + LAD          +   L     L +L L NN         L         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 152 NLIYFHVGNNKLEGQIPKEIGSLLK 176
            L    + +     ++   + +L K
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEK 451

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 1e-04
 Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 5/118 (4%)

Query: 84  LNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTI 143
           L+L+ + +  +   ++  L  + +++L+ N      P  +  L  LE L   +N+     
Sbjct: 3   LHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 144 PTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
                     +     N   +    + + S  +L  L L  N L  Q       L+ +
Sbjct: 60  GVANLPRLQELLLC-NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 115

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 3e-04
 Identities = 21/128 (16%), Positives = 34/128 (26%), Gaps = 9/128 (7%)

Query: 51  HDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINL 110
            D               L            +             +         L  +N+
Sbjct: 232 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 291

Query: 111 ADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKE 170
           ++N    E+P     L   E+L    N  +  +P       NL   HV  N L  + P  
Sbjct: 292 SNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDI 342

Query: 171 IGSLLKLQ 178
             S+  L+
Sbjct: 343 PESVEDLR 350

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 4e-04
 Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 3/106 (2%)

Query: 82  TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG 141
             L+L+ + +   ++  + +   +       +     +  E  +  R++ + L N+    
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEV 60

Query: 142 -TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNY 186
            T+   LS+CS L    +   +L   I   +     L  L L    
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.68
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.62
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.62
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.6
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.59
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.57
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.56
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.4
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.4
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.38
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.33
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.32
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.3
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.18
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.18
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.11
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.04
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.97
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.95
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.69
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.64
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.41
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.41
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.35
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.24
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.24
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.86
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.54
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.19
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.14

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=1.2e-30  Score=207.56  Aligned_cols=167  Identities=33%  Similarity=0.568  Sum_probs=153.4

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC--ccccceeCCCC--CcEEEEEcCCCCCcc--ccCccccCCCCCcE
Q 035702           34 QTNETDRLALLTIKSQLHDPSGVTSSWNNTINLC--LWTGVTCGHRH--QRVTELNLSSQRIGG--ILSPYVGNLSFLRY  107 (202)
Q Consensus        34 ~~~~~~~~~L~~~~~~~~~~~~~~~~W~~~~~~c--~w~gv~c~~~~--~~v~~L~l~~~~l~~--~~~~~l~~l~~L~~  107 (202)
                      -|.++|++||++||+++.+|. .+++|..++|||  .|+||+|+...  .+|+.|+|+++++.|  .+|+.+.++++|++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~   80 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccc
Confidence            488999999999999998765 688999889999  59999998653  489999999999998  47899999999999


Q ss_pred             EEccC-CcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccc
Q 035702          108 INLAD-NGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNY  186 (202)
Q Consensus       108 L~l~~-n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~  186 (202)
                      |++++ |.++|.+|+.++++++|++|++++|++.+..+..+..+.+|+++++++|.+.+.+|..+.++++++++++++|.
T Consensus        81 L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_          81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccc
Confidence            99997 89999999999999999999999999998888889999999999999999999999999999999999999999


Q ss_pred             cccccChhccCCCCC
Q 035702          187 LTRQLPDFIGNLSAL  201 (202)
Q Consensus       187 l~g~iP~~~~~l~~L  201 (202)
                      ++|.+|..++.+..+
T Consensus       161 l~~~ip~~~~~l~~l  175 (313)
T d1ogqa_         161 ISGAIPDSYGSFSKL  175 (313)
T ss_dssp             CEEECCGGGGCCCTT
T ss_pred             ccccccccccccccc
Confidence            999999988887764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=2.8e-18  Score=126.66  Aligned_cols=126  Identities=23%  Similarity=0.289  Sum_probs=108.6

Q ss_pred             CCCccccceeCCCC---------CcEEEEEcCCCCCcccc-CccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeC
Q 035702           65 NLCLWTGVTCGHRH---------QRVTELNLSSQRIGGIL-SPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLAL  134 (202)
Q Consensus        65 ~~c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  134 (202)
                      ..|.|..|.|....         ..+++|+|++|.+++.+ +..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus         6 C~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_           6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            34678888886432         47899999999998755 456789999999999999999888889999999999999


Q ss_pred             CCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccc
Q 035702          135 PNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQ  190 (202)
Q Consensus       135 s~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~  190 (202)
                      ++|+++...|..|.++++|++|+|++|++++..|..|..+++|+++++++|.+...
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence            99999966667789999999999999999966667788999999999999988743

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=1.5e-16  Score=117.16  Aligned_cols=118  Identities=24%  Similarity=0.318  Sum_probs=103.4

Q ss_pred             EEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccC-chhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeec
Q 035702           82 TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEI-PQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGN  160 (202)
Q Consensus        82 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~  160 (202)
                      +.++.++++++. +|+.+.  +++++|++++|.+++.+ +..|..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus        11 ~~v~Cs~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcCc-cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            468999999986 676654  68999999999998655 55678999999999999999988888999999999999999


Q ss_pred             ccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          161 NKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       161 n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      |++++..|..|.++++|++|+|++|++++..|..|..+++|+
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~  129 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccc
Confidence            999966667899999999999999999977777888888774

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.4e-16  Score=109.54  Aligned_cols=101  Identities=23%  Similarity=0.311  Sum_probs=89.7

Q ss_pred             EEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecc
Q 035702           82 TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNN  161 (202)
Q Consensus        82 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n  161 (202)
                      +.|++++|+++. ++ .+..+++|++|++++|.++ .+|+.++.+++|++|++++|.++ .+| .+..+++|+++++++|
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            368999999986 44 4899999999999999998 78888999999999999999999 565 4899999999999999


Q ss_pred             cCcccCC--hhccCCCCCceeeccccccc
Q 035702          162 KLEGQIP--KEIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       162 ~~~g~~p--~~~~~l~~L~~L~l~~N~l~  188 (202)
                      +++ .+|  ..+..+++|+.+++++|+++
T Consensus        76 ~i~-~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQ-QSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCC-SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccC-CCCCchhhcCCCCCCEEECCCCcCC
Confidence            998 444  46889999999999999997

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5.4e-16  Score=111.33  Aligned_cols=118  Identities=23%  Similarity=0.256  Sum_probs=97.7

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcCh-hccCCCCCcEEE
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPT-NLSRCSNLIYFH  157 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~L~~L~  157 (202)
                      ..+++|+|++|+++. ++..+..+++|+.|++++|.++ .++ .+..+++|++|++++|.++ .+|. .+..+++|++|+
T Consensus        18 ~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          18 VRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEE
T ss_pred             CcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhccccccc-CCCccccccccccccce
Confidence            468999999999988 4665678999999999999998 554 4889999999999999999 4554 456899999999


Q ss_pred             eecccCcccCC--hhccCCCCCceeeccccccccccCh----hccCCCCCC
Q 035702          158 VGNNKLEGQIP--KEIGSLLKLQTLALYYNYLTRQLPD----FIGNLSALE  202 (202)
Q Consensus       158 l~~n~~~g~~p--~~~~~l~~L~~L~l~~N~l~g~iP~----~~~~l~~L~  202 (202)
                      +++|+++ .++  ..+..+++|++|++++|.++ ..|.    .+..+++|+
T Consensus        94 L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~  142 (162)
T d1a9na_          94 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVR  142 (162)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCS
T ss_pred             ecccccc-ccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcC
Confidence            9999998 444  35788999999999999997 5553    466677664

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.62  E-value=2.2e-16  Score=124.33  Aligned_cols=122  Identities=27%  Similarity=0.499  Sum_probs=113.1

Q ss_pred             CcEEEEEcCC-CCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702           79 QRVTELNLSS-QRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH  157 (202)
Q Consensus        79 ~~v~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~  157 (202)
                      ..++.|++++ |.+.|.+|+.+.++++|++|++++|.+.+..+..+..+.+|+++++++|.+.+.+|..+.+++.+++++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~  155 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceee
Confidence            6789999987 899999999999999999999999999999999899999999999999999999999999999999999


Q ss_pred             eecccCcccCChhccCCCCC-ceeeccccccccccChhccCCCC
Q 035702          158 VGNNKLEGQIPKEIGSLLKL-QTLALYYNYLTRQLPDFIGNLSA  200 (202)
Q Consensus       158 l~~n~~~g~~p~~~~~l~~L-~~L~l~~N~l~g~iP~~~~~l~~  200 (202)
                      +++|.++|.+|..+..+.++ +.++++.|+++|..|..+.++..
T Consensus       156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~  199 (313)
T d1ogqa_         156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL  199 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999888876 88999999999999988876653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.6e-15  Score=113.45  Aligned_cols=121  Identities=22%  Similarity=0.197  Sum_probs=76.8

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG  159 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~  159 (202)
                      .++.|++++|.+++ .+..+..+++|++|++++|.+....+..+..+.++++|++++|.++...+..+..+++++.++++
T Consensus        78 ~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~  156 (266)
T d1p9ag_          78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (266)
T ss_dssp             TCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cccccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccc
Confidence            34444444444443 23334444444445544444443333444445555566666666663334455677888889999


Q ss_pred             cccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      +|++++..+..+..+++|++|++++|+++ .+|..+..+++|+
T Consensus       157 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~  198 (266)
T d1p9ag_         157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP  198 (266)
T ss_dssp             TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCS
T ss_pred             cccccccCccccccccccceeecccCCCc-ccChhHCCCCCCC
Confidence            99888666667888899999999999998 8888888777764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.3e-15  Score=116.09  Aligned_cols=124  Identities=23%  Similarity=0.268  Sum_probs=82.7

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.+++++|.+....+..+....+|+.+++++|.+++..+..+..+++|+.|++++|.+++..+..+.++++|+++++
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l  184 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhh
Confidence            45667777777766555555666666777777777776444555666677777777777776544556667777777777


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|++++..|..+..+++|++|++++|++++..|..|+++++|+
T Consensus       185 ~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~  228 (284)
T d1ozna_         185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (284)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             hhccccccChhHhhhhhhcccccccccccccccccccccccccC
Confidence            77777766666677777777777777777755556666666553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.1e-14  Score=112.10  Aligned_cols=121  Identities=23%  Similarity=0.247  Sum_probs=85.2

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      ..++.|+|++|.+++..+..|..+++|++|++++|.++ .+|. ++.+++|++|++++|+++ ..+..+.++++|+.|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-cccccccccccccccccc-ccccccccccccccccc
Confidence            46888889988888865667888888888888888887 4443 467888888888888887 44556666666666666


Q ss_pred             ecccCccc------------------------CChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQ------------------------IPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~------------------------~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|.+.+.                        .+..+..+++++.+++++|++++..+..|..+++|+
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~  175 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD  175 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred             cccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccc
Confidence            66655422                        223344566777777777777765556666666653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.56  E-value=1.8e-14  Score=112.67  Aligned_cols=76  Identities=25%  Similarity=0.332  Sum_probs=57.6

Q ss_pred             CCCccccceeCCC---------CCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCC
Q 035702           65 NLCLWTGVTCGHR---------HQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALP  135 (202)
Q Consensus        65 ~~c~w~gv~c~~~---------~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls  135 (202)
                      ..|.|++|.|...         ...++.|++++|+++...+..|..+++|++|++++|.+....|..|.++++|++|+++
T Consensus         8 c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_           8 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            4478888888642         1568889999998888555568888888888888888886656677777777777777


Q ss_pred             CCcCc
Q 035702          136 NNSFS  140 (202)
Q Consensus       136 ~n~l~  140 (202)
                      +|+++
T Consensus        88 ~n~l~   92 (305)
T d1xkua_          88 KNQLK   92 (305)
T ss_dssp             SSCCS
T ss_pred             CCccC
Confidence            77655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.5e-14  Score=111.01  Aligned_cols=112  Identities=19%  Similarity=0.180  Sum_probs=102.7

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      ..++.+++++|.+++..+..+..+++|+.|++++|.+++..+..+.++++|+++++++|.+++..|..+.++++|++|++
T Consensus       129 ~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l  208 (284)
T d1ozna_         129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL  208 (284)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccc
Confidence            56889999999999866677889999999999999999777888999999999999999999888999999999999999


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccccc
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQ  190 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~  190 (202)
                      ++|.+++..|..+..+++|++|++++|.+.+.
T Consensus       209 ~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         209 FANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             CSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             cccccccccccccccccccCEEEecCCCCCCC
Confidence            99999977777899999999999999988754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=5e-14  Score=96.46  Aligned_cols=91  Identities=25%  Similarity=0.357  Sum_probs=79.3

Q ss_pred             cEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeecccc
Q 035702          106 RYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYN  185 (202)
Q Consensus       106 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N  185 (202)
                      ++|++++|.++ .++ .+..+++|++|++++|.++ .+|+.++.+++|++|++++|.++ .+| .+.++++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            57999999998 555 4889999999999999999 78988999999999999999999 565 5899999999999999


Q ss_pred             ccccccC--hhccCCCCCC
Q 035702          186 YLTRQLP--DFIGNLSALE  202 (202)
Q Consensus       186 ~l~g~iP--~~~~~l~~L~  202 (202)
                      +++ .+|  ..+..+++|+
T Consensus        76 ~i~-~~~~~~~l~~~~~L~   93 (124)
T d1dcea3          76 RLQ-QSAAIQPLVSCPRLV   93 (124)
T ss_dssp             CCC-SSSTTGGGGGCTTCC
T ss_pred             ccC-CCCCchhhcCCCCCC
Confidence            998 444  4677777764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.2e-13  Score=98.18  Aligned_cols=103  Identities=17%  Similarity=0.112  Sum_probs=71.5

Q ss_pred             EEcCCCCCccccCccccCCCCCcEEEccCC-cCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeeccc
Q 035702           84 LNLSSQRIGGILSPYVGNLSFLRYINLADN-GFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNK  162 (202)
Q Consensus        84 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~  162 (202)
                      ++.+++++.. .|..+..+++|++|++++| .++...+..|.++++|+.|++++|+++..-|..|..+++|++|+|++|+
T Consensus        13 l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          13 LRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             EECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            3334444444 4556777778888888655 4664445567778888888888888875556667788888888888888


Q ss_pred             CcccCChhccCCCCCceeeccccccc
Q 035702          163 LEGQIPKEIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       163 ~~g~~p~~~~~l~~L~~L~l~~N~l~  188 (202)
                      ++ .+|.......+|+.|++++|.+.
T Consensus        92 l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          92 LE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             Cc-ccChhhhccccccccccCCCccc
Confidence            87 56665555556888888888764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.6e-13  Score=98.22  Aligned_cols=101  Identities=20%  Similarity=0.154  Sum_probs=83.7

Q ss_pred             cccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCC
Q 035702           98 YVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKL  177 (202)
Q Consensus        98 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L  177 (202)
                      .+.+...+++|++++|.++ .++..+..+++|+.|++++|.++ .++ .+..+++|++|++++|+++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence            4667788999999999999 66766678999999999999999 664 58899999999999999995434446689999


Q ss_pred             ceeeccccccccccC--hhccCCCCCC
Q 035702          178 QTLALYYNYLTRQLP--DFIGNLSALE  202 (202)
Q Consensus       178 ~~L~l~~N~l~g~iP--~~~~~l~~L~  202 (202)
                      ++|++++|+++ .++  ..+..+++|+
T Consensus        90 ~~L~L~~N~i~-~~~~l~~l~~l~~L~  115 (162)
T d1a9na_          90 TELILTNNSLV-ELGDLDPLASLKSLT  115 (162)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCC
T ss_pred             ccceecccccc-ccccccccccccccc
Confidence            99999999998 444  3567777764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=1e-12  Score=96.73  Aligned_cols=115  Identities=26%  Similarity=0.458  Sum_probs=76.4

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCc---------------------hhccCCCCCCeEeCCCC
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIP---------------------QEIGNLLRLEKLALPNN  137 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p---------------------~~~~~l~~L~~L~ls~n  137 (202)
                      .+++.|++++|.+++. ++ +..+++|++|++++|.+. .++                     +.+..+++|+.+++++|
T Consensus        62 ~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n  138 (199)
T d2omxa2          62 NNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN  138 (199)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             CCcCcCccccccccCc-cc-ccCCcccccccccccccc-cccccccccccccccccccccccccccchhhhhHHhhhhhh
Confidence            4567777777776663 22 566666666666666554 222                     12455666777777777


Q ss_pred             cCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          138 SFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       138 ~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      .+. .++ .+..+++|+.|++.+|+++ .++ .+.++++|++|++++|+++ .+| .++++++|+
T Consensus       139 ~l~-~~~-~l~~~~~L~~L~l~~n~l~-~l~-~l~~l~~L~~L~ls~N~i~-~i~-~l~~L~~L~  197 (199)
T d2omxa2         139 TIS-DIS-ALSGLTSLQQLNFSSNQVT-DLK-PLANLTTLERLDISSNKVS-DIS-VLAKLTNLE  197 (199)
T ss_dssp             CCC-CCG-GGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCS
T ss_pred             hhc-ccc-ccccccccccccccccccc-CCc-cccCCCCCCEEECCCCCCC-CCc-cccCCCCCC
Confidence            665 333 4667778888888888777 343 4788889999999999887 455 477777775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.5e-13  Score=94.72  Aligned_cols=132  Identities=15%  Similarity=0.149  Sum_probs=94.4

Q ss_pred             ccccceeCCC-----------CCcEEEEEcCCCC-CccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCC
Q 035702           68 LWTGVTCGHR-----------HQRVTELNLSSQR-IGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALP  135 (202)
Q Consensus        68 ~w~gv~c~~~-----------~~~v~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls  135 (202)
                      .+++++|...           ..++++|++.+++ ++..-+..|..+++|+.|++++|.++...+..|..+++|++|+|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            4566777532           1578999998764 887666779999999999999999997778889999999999999


Q ss_pred             CCcCccCcChhccCCCCCcEEEeecccCccc-CChhccCCCCCceeeccccccccccChhccCCCC
Q 035702          136 NNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQ-IPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSA  200 (202)
Q Consensus       136 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~-~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~  200 (202)
                      +|+++ .+|.......+|++|++++|.+.=. --..+..+.......+..+.++..-|..+..++.
T Consensus        89 ~N~l~-~l~~~~~~~~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~p~  153 (156)
T d2ifga3          89 FNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPN  153 (156)
T ss_dssp             SSCCS-CCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCCC
T ss_pred             CCCCc-ccChhhhccccccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHCcCCc
Confidence            99999 7776655566899999999998511 0111222222233334445666556665665553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.40  E-value=1.1e-12  Score=102.43  Aligned_cols=108  Identities=20%  Similarity=0.243  Sum_probs=85.4

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.+++++|...+..+..+..++.++.|++++|.+++..+..+..+++|++|++++|.++ .+|..+.++++|++|++
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~L  249 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL  249 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred             CccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEEC
Confidence            56778888888888777777888888888888888888777777888888888888888888 77888888888888888


Q ss_pred             ecccCcccCCh-------hccCCCCCceeeccccccc
Q 035702          159 GNNKLEGQIPK-------EIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       159 ~~n~~~g~~p~-------~~~~l~~L~~L~l~~N~l~  188 (202)
                      ++|+++ .++.       ....+++|+.|++++|.+.
T Consensus       250 s~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         250 HNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCCccC-ccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            888887 4433       2235667888888888774

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.38  E-value=3.2e-12  Score=94.87  Aligned_cols=116  Identities=28%  Similarity=0.398  Sum_probs=79.6

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccC----------------
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGT----------------  142 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~----------------  142 (202)
                      .++++|++++|.+++ ++ .+..+++|++|++++|.++ .+| .+..+++|+.+++++|.+...                
T Consensus        68 ~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~  143 (210)
T d1h6ta2          68 PNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGN  143 (210)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred             CCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-ccccccccccccccccccccccccccccccccccccc
Confidence            457777777777766 33 2566777777777777766 333 355566666666666554410                


Q ss_pred             ----cChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          143 ----IPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       143 ----~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                          .+..+..+++|+++++++|++++ ++ .+.++++|+.|++++|+++ .+| .+.++++|+
T Consensus       144 n~l~~~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~  203 (210)
T d1h6ta2         144 NKITDITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLD  203 (210)
T ss_dssp             SCCCCCGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCS
T ss_pred             ccccccccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCC
Confidence                12235567888999999998884 44 4888999999999999998 566 478888775

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.33  E-value=5.2e-12  Score=100.77  Aligned_cols=116  Identities=23%  Similarity=0.325  Sum_probs=84.2

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccC--------------------chhccCCCCCCeEeCCCCc
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEI--------------------PQEIGNLLRLEKLALPNNS  138 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--------------------p~~~~~l~~L~~L~ls~n~  138 (202)
                      ..++.+++++|.+++..  .+..+++|++++++++.+++..                    ...+..+++++.+++++|+
T Consensus       241 ~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~  318 (384)
T d2omza2         241 TNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN  318 (384)
T ss_dssp             TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC
T ss_pred             cccchhccccCccCCCC--cccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCC
Confidence            45666666666666532  2555666666666666554321                    1235667889999999999


Q ss_pred             CccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          139 FSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       139 l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      +++. + .+..+++|++|++++|+++ .++ .+.++++|++|++++|++++..|  +.++++|+
T Consensus       319 l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~  376 (384)
T d2omza2         319 ISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP--LANLTRIT  376 (384)
T ss_dssp             CSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCS
T ss_pred             CCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCC
Confidence            9854 3 3788999999999999998 455 68899999999999999996554  77787764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=7.4e-12  Score=92.04  Aligned_cols=102  Identities=26%  Similarity=0.343  Sum_probs=71.3

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++++++. + +.+..+++|++|++++|.+++. ++ ++++++|++|++++|.+. .++ .+.++++|+.+++
T Consensus        40 ~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCc-cc-ccCCcccccccccccccc-ccc-ccccccccccccc
Confidence            568899999999886 3 3478899999999999999854 43 889999999999999887 444 2556666666666


Q ss_pred             ecccCcccCChhccCCCCCceeeccccccc
Q 035702          159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~  188 (202)
                      ++|.+.. + ..+..+++|+.|++++|.+.
T Consensus       114 ~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~  141 (199)
T d2omxa2         114 FNNQITD-I-DPLKNLTNLNRLELSSNTIS  141 (199)
T ss_dssp             CSSCCCC-C-GGGTTCTTCSEEECCSSCCC
T ss_pred             ccccccc-c-cccchhhhhHHhhhhhhhhc
Confidence            5555542 1 22444445555555554443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.32  E-value=8.5e-15  Score=108.32  Aligned_cols=108  Identities=24%  Similarity=0.284  Sum_probs=90.7

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      .+++.|++++|.++. ++ .+..+++|+.|++++|.++ .+|.....+++|++|++++|.++ .++ .+..+++|++|++
T Consensus        48 ~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~L  122 (198)
T d1m9la_          48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             TTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHSSEEEE
T ss_pred             cccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc-ccccccccccccc
Confidence            678999999999986 44 5889999999999999998 66665556678999999999998 454 4778999999999


Q ss_pred             ecccCcccCC--hhccCCCCCceeeccccccccccC
Q 035702          159 GNNKLEGQIP--KEIGSLLKLQTLALYYNYLTRQLP  192 (202)
Q Consensus       159 ~~n~~~g~~p--~~~~~l~~L~~L~l~~N~l~g~iP  192 (202)
                      ++|+++ .++  ..+..+++|+.|++++|.++...+
T Consensus       123 ~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         123 SNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             SEEECC-CHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             ccchhc-cccccccccCCCccceeecCCCccccCcc
Confidence            999998 444  468899999999999999875544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.30  E-value=1.1e-11  Score=91.92  Aligned_cols=115  Identities=21%  Similarity=0.291  Sum_probs=87.1

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV  158 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l  158 (202)
                      ..++.++++++.++.. + .+..+++|++|++++|.+++ ++ .++.+++|++|++++|+++ .+| .+.++++|+.+++
T Consensus        46 ~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-ccccccccccccc
Confidence            4578999999998873 3 37889999999999999995 44 3688999999999999998 566 4788889999988


Q ss_pred             ecccCcccCC---------------------hhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          159 GNNKLEGQIP---------------------KEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       159 ~~n~~~g~~p---------------------~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      .+|.+. .++                     ..+.++++|+++++++|.+++ ++. +.++++|+
T Consensus       120 ~~~~~~-~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~  181 (210)
T d1h6ta2         120 EHNGIS-DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQ  181 (210)
T ss_dssp             TTSCCC-CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCC
T ss_pred             cccccc-ccccccccccccccccccccccccccccccccccccccccccccc-ccc-ccCCCCCC
Confidence            888765 221                     224456677777777777763 432 66666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.18  E-value=1.5e-10  Score=86.45  Aligned_cols=116  Identities=23%  Similarity=0.365  Sum_probs=85.3

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCc--------------------hhccCCCCCCeEeCCCCc
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIP--------------------QEIGNLLRLEKLALPNNS  138 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p--------------------~~~~~l~~L~~L~ls~n~  138 (202)
                      ..++.++++++.++. + +.+..+++|+.++++++...+..+                    ..+...++|+.|++++|.
T Consensus        85 ~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  162 (227)
T d1h6ua2          85 TKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ  162 (227)
T ss_dssp             CSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             ccccccccccccccc-c-ccccccccccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccc
Confidence            456777777776664 2 236667777777777665543211                    234567889999999999


Q ss_pred             CccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          139 FSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       139 l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                      +++. + .++++++|+.|++++|+++ .++ .+.++++|++|++++|+++ .+|. +.++++|+
T Consensus       163 ~~~~-~-~l~~l~~L~~L~Ls~n~l~-~l~-~l~~l~~L~~L~Ls~N~lt-~i~~-l~~l~~L~  220 (227)
T d1h6ua2         163 VSDL-T-PLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQIS-DVSP-LANTSNLF  220 (227)
T ss_dssp             CCCC-G-GGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECTTSCCC-BCGG-GTTCTTCC
T ss_pred             cccc-h-hhcccccceecccCCCccC-CCh-hhcCCCCCCEEECcCCcCC-CCcc-cccCCCCC
Confidence            8743 3 3789999999999999998 454 4889999999999999998 5553 77787774

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.18  E-value=4.5e-11  Score=95.18  Aligned_cols=83  Identities=23%  Similarity=0.424  Sum_probs=71.5

Q ss_pred             cccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCC
Q 035702           98 YVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKL  177 (202)
Q Consensus        98 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L  177 (202)
                      .+..++++++|++++|.+++. + .+..+++|++|++++|+++ .++ .+.++++|++|++++|++++ +++ +.++++|
T Consensus       302 ~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~-l~~-l~~l~~L  375 (384)
T d2omza2         302 PISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISD-LTP-LANLTRI  375 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCB-CGG-GTTCTTC
T ss_pred             ccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCC-Chh-hccCCCC
Confidence            467788999999999999854 3 3788999999999999998 455 68999999999999999995 443 8899999


Q ss_pred             ceeeccccc
Q 035702          178 QTLALYYNY  186 (202)
Q Consensus       178 ~~L~l~~N~  186 (202)
                      +.|++++|.
T Consensus       376 ~~L~L~~Na  384 (384)
T d2omza2         376 TQLGLNDQA  384 (384)
T ss_dssp             SEEECCCEE
T ss_pred             CEeeCCCCc
Confidence            999999883

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.18  E-value=1.3e-13  Score=101.79  Aligned_cols=102  Identities=21%  Similarity=0.293  Sum_probs=85.6

Q ss_pred             cCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCC
Q 035702           95 LSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSL  174 (202)
Q Consensus        95 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l  174 (202)
                      ++..+..+++|++|++++|.++ .++ .+..+++|++|++++|.++ .+|.....+++|++|++++|+++ .+ +.+..+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l-~~~~~l  114 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CH-HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-cc-cccccc
Confidence            5567889999999999999998 555 4888999999999999998 77766666778999999999998 44 457889


Q ss_pred             CCCceeeccccccccccC--hhccCCCCCC
Q 035702          175 LKLQTLALYYNYLTRQLP--DFIGNLSALE  202 (202)
Q Consensus       175 ~~L~~L~l~~N~l~g~iP--~~~~~l~~L~  202 (202)
                      ++|++|++++|+++ .++  ..+..+++|+
T Consensus       115 ~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~  143 (198)
T d1m9la_         115 VNLRVLYMSNNKIT-NWGEIDKLAALDKLE  143 (198)
T ss_dssp             HHSSEEEESEEECC-CHHHHHHHTTTTTCS
T ss_pred             ccccccccccchhc-cccccccccCCCccc
Confidence            99999999999998 444  4577777764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.11  E-value=3.5e-10  Score=84.34  Aligned_cols=116  Identities=22%  Similarity=0.405  Sum_probs=89.9

Q ss_pred             CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcC--------------
Q 035702           79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIP--------------  144 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p--------------  144 (202)
                      .+++.|++++|.+.+..  .+..+++++++++++|.++ .++ .+..+++|++++++++...+..+              
T Consensus        63 ~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~  138 (227)
T d1h6ua2          63 NNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL  138 (227)
T ss_dssp             TTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred             CCCcEeecCCceeeccc--ccccccccccccccccccc-ccc-cccccccccccccccccccccchhccccchhhhhchh
Confidence            67899999999988743  2788899999999999887 444 47788999999998887664211              


Q ss_pred             ------hhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702          145 ------TNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       145 ------~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~  202 (202)
                            ..+.++++|++|++++|.+++ . ..+.++++|+.|++++|+++ .+|. ++++++|+
T Consensus       139 ~~~~~~~~~~~~~~L~~L~l~~n~~~~-~-~~l~~l~~L~~L~Ls~n~l~-~l~~-l~~l~~L~  198 (227)
T d1h6ua2         139 NQITNISPLAGLTNLQYLSIGNAQVSD-L-TPLANLSKLTTLKADDNKIS-DISP-LASLPNLI  198 (227)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCC
T ss_pred             hhhchhhhhcccccccccccccccccc-c-hhhcccccceecccCCCccC-CChh-hcCCCCCC
Confidence                  234566789999999998873 3 34789999999999999998 4554 77777774

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.6e-10  Score=84.77  Aligned_cols=98  Identities=18%  Similarity=0.287  Sum_probs=75.4

Q ss_pred             CccccceeCCCC---------CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCc-hhccCCCCCCeEeCCC
Q 035702           67 CLWTGVTCGHRH---------QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIP-QEIGNLLRLEKLALPN  136 (202)
Q Consensus        67 c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~ls~  136 (202)
                      |..+.|.|....         ..+++|++++|.++...+..|.++++|++|++++|.+...++ ..|..++.++++++..
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            566667775321         468899999999987555678899999999999998875554 4577888888888654


Q ss_pred             -CcCccCcChhccCCCCCcEEEeecccCc
Q 035702          137 -NSFSGTIPTNLSRCSNLIYFHVGNNKLE  164 (202)
Q Consensus       137 -n~l~~~~p~~l~~l~~L~~L~l~~n~~~  164 (202)
                       |.+....+..+.++++|+++++.+|+++
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             cccccccccccccccccccccccchhhhc
Confidence             5677566677888999999999998876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2e-09  Score=80.63  Aligned_cols=104  Identities=13%  Similarity=0.093  Sum_probs=85.2

Q ss_pred             EEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcC-hhccCCCCCcEEEeec
Q 035702           82 TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIP-TNLSRCSNLIYFHVGN  160 (202)
Q Consensus        82 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~L~l~~  160 (202)
                      +.++.++.+++. +|+.+.  +++++|++++|.++...+..|.++++|++|++++|.+...++ ..+.+++.++++.+..
T Consensus        11 ~~i~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTE-IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSS-CCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCC-cCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            367778888875 676553  579999999999985445578999999999999999886554 4678899999999875


Q ss_pred             -ccCcccCChhccCCCCCceeeccccccc
Q 035702          161 -NKLEGQIPKEIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       161 -n~~~g~~p~~~~~l~~L~~L~l~~N~l~  188 (202)
                       |.+....+..+..+++|+++++++|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             cccccccccccccccccccccccchhhhc
Confidence             6677566677899999999999999987

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.95  E-value=1.4e-09  Score=85.15  Aligned_cols=99  Identities=26%  Similarity=0.389  Sum_probs=77.7

Q ss_pred             cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702           80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG  159 (202)
Q Consensus        80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~  159 (202)
                      ++++|++++++++. +|+.   .++|++|++++|.++ .+|..   +.+|+.|++++|.++ .++..   .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence            46789999999886 6653   468999999999998 77764   457889999999888 55532   1469999999


Q ss_pred             cccCcccCChhccCCCCCceeeccccccccccCh
Q 035702          160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPD  193 (202)
Q Consensus       160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~  193 (202)
                      +|.+. .+|. ++.+++|++|++++|.++ ..|.
T Consensus       107 ~n~l~-~lp~-~~~l~~L~~L~l~~~~~~-~~~~  137 (353)
T d1jl5a_         107 NNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPD  137 (353)
T ss_dssp             SSCCS-SCCC-CTTCTTCCEEECCSSCCS-CCCC
T ss_pred             ccccc-cccc-hhhhccceeecccccccc-cccc
Confidence            99988 6764 678899999999998887 3443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.9e-09  Score=83.12  Aligned_cols=54  Identities=24%  Similarity=0.320  Sum_probs=33.3

Q ss_pred             CCCCCcEEEeecc-cCcccCChhccCCCCCceeeccc-cccccccChhccCCCCCC
Q 035702          149 RCSNLIYFHVGNN-KLEGQIPKEIGSLLKLQTLALYY-NYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       149 ~l~~L~~L~l~~n-~~~g~~p~~~~~l~~L~~L~l~~-N~l~g~iP~~~~~l~~L~  202 (202)
                      ++++|++|++++| .+++.....+.++++|++|++++ +.++......++++++|+
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~  228 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK  228 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCC
Confidence            4566777777664 35555555666677777777776 356655555566666553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.5e-09  Score=87.67  Aligned_cols=111  Identities=19%  Similarity=0.270  Sum_probs=85.3

Q ss_pred             CcEEEEEcCCCCCcccc-CccccCCCCCcEEEccCCcCcc----cCchhccCCCCCCeEeCCCCcCccC----cChhcc-
Q 035702           79 QRVTELNLSSQRIGGIL-SPYVGNLSFLRYINLADNGFHG----EIPQEIGNLLRLEKLALPNNSFSGT----IPTNLS-  148 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~ls~n~l~~~----~p~~l~-  148 (202)
                      .+++.|+++++++++.- ..-+..+++++.|+|++|.++.    .+...+...++|++|++++|.++..    +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            36899999999998632 3445667899999999999873    3345567889999999999998732    222332 


Q ss_pred             CCCCCcEEEeecccCccc----CChhccCCCCCceeecccccccc
Q 035702          149 RCSNLIYFHVGNNKLEGQ----IPKEIGSLLKLQTLALYYNYLTR  189 (202)
Q Consensus       149 ~l~~L~~L~l~~n~~~g~----~p~~~~~l~~L~~L~l~~N~l~g  189 (202)
                      ...+|++|++++|++++.    ++..+...++|++|++++|.++.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            235799999999999743    45567788999999999998863

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.64  E-value=5.5e-08  Score=75.72  Aligned_cols=86  Identities=27%  Similarity=0.337  Sum_probs=69.5

Q ss_pred             CCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeec
Q 035702          103 SFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLAL  182 (202)
Q Consensus       103 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l  182 (202)
                      .++++|+++++.++ .+|+.   +++|++|++++|.++ .+|+.   +.+|+.|++.+|+++ .++..   .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence            36889999999998 78863   578999999999999 88875   468999999999998 55531   246999999


Q ss_pred             cccccccccChhccCCCCCC
Q 035702          183 YYNYLTRQLPDFIGNLSALE  202 (202)
Q Consensus       183 ~~N~l~g~iP~~~~~l~~L~  202 (202)
                      ++|.++ .+|. ++++++|+
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~  123 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLK  123 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCC
T ss_pred             cccccc-cccc-hhhhccce
Confidence            999998 7775 56677664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2e-09  Score=76.32  Aligned_cols=82  Identities=18%  Similarity=0.164  Sum_probs=57.8

Q ss_pred             ccCCCCCcEEEccCCcCccc--CchhccCCCCCCeEeCCCCcCccCcCh-hccCCCCCcEEEeecccCcccCCh------
Q 035702           99 VGNLSFLRYINLADNGFHGE--IPQEIGNLLRLEKLALPNNSFSGTIPT-NLSRCSNLIYFHVGNNKLEGQIPK------  169 (202)
Q Consensus        99 l~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~L~~L~l~~n~~~g~~p~------  169 (202)
                      ...+++|++|++++|.++..  ++..+..+++|+.|++++|.++ .+++ ......+|+.+++.+|.+......      
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            34678888888888888743  2344667888888888888888 4443 233445788888888888754432      


Q ss_pred             -hccCCCCCceee
Q 035702          170 -EIGSLLKLQTLA  181 (202)
Q Consensus       170 -~~~~l~~L~~L~  181 (202)
                       .+..+|+|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence             255778888876

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.41  E-value=5.1e-08  Score=76.60  Aligned_cols=110  Identities=18%  Similarity=0.181  Sum_probs=77.8

Q ss_pred             CcEEEEEcCCCCCccc-----cCccccCCCCCcEEEccCCcCccc----CchhccCCCCCCeEeCCCCcCccCcC----h
Q 035702           79 QRVTELNLSSQRIGGI-----LSPYVGNLSFLRYINLADNGFHGE----IPQEIGNLLRLEKLALPNNSFSGTIP----T  145 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~-----~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~~p----~  145 (202)
                      ..++.+++++|.+...     +...+...++|+.|++++|.++..    +...+...++|++|++++|.+++.-.    .
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~  265 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  265 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHH
Confidence            4678888988887642     334567788899999999887632    33456678889999999998875422    2


Q ss_pred             hcc--CCCCCcEEEeecccCccc----CChhcc-CCCCCceeeccccccc
Q 035702          146 NLS--RCSNLIYFHVGNNKLEGQ----IPKEIG-SLLKLQTLALYYNYLT  188 (202)
Q Consensus       146 ~l~--~l~~L~~L~l~~n~~~g~----~p~~~~-~l~~L~~L~l~~N~l~  188 (202)
                      .+.  ..+.|++|++++|+++..    +...+. +.++|++|++++|.+.
T Consensus       266 ~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         266 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            232  236789999999988642    223332 5678999999999886

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=3.3e-08  Score=69.77  Aligned_cols=74  Identities=23%  Similarity=0.224  Sum_probs=53.3

Q ss_pred             cCchhccCCCCCCeEeCCCCcCccC--cChhccCCCCCcEEEeecccCcccCCh-hccCCCCCceeeccccccccccC
Q 035702          118 EIPQEIGNLLRLEKLALPNNSFSGT--IPTNLSRCSNLIYFHVGNNKLEGQIPK-EIGSLLKLQTLALYYNYLTRQLP  192 (202)
Q Consensus       118 ~~p~~~~~l~~L~~L~ls~n~l~~~--~p~~l~~l~~L~~L~l~~n~~~g~~p~-~~~~l~~L~~L~l~~N~l~g~iP  192 (202)
                      .++.....+++|++|++++|+++..  ++..+..+++|+.|++++|.++ .+++ ......+|+.+++++|.++....
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcc
Confidence            3344445688899999999998842  2345667899999999999988 4443 23345578999999998875543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2e-07  Score=71.49  Aligned_cols=107  Identities=17%  Similarity=0.182  Sum_probs=58.0

Q ss_pred             CcEEEEEcCCC-CCccc-cCcccc-CCCCCcEEEccCC--cCccc-CchhccCCCCCCeEeCCCC-cCccCcChhccCCC
Q 035702           79 QRVTELNLSSQ-RIGGI-LSPYVG-NLSFLRYINLADN--GFHGE-IPQEIGNLLRLEKLALPNN-SFSGTIPTNLSRCS  151 (202)
Q Consensus        79 ~~v~~L~l~~~-~l~~~-~~~~l~-~l~~L~~L~l~~n--~l~~~-~p~~~~~l~~L~~L~ls~n-~l~~~~p~~l~~l~  151 (202)
                      .++++|+++++ .++.. +...+. ..++|+.|+++++  .++.. +......+++|++|++++| .+++..+..+.+++
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~  200 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  200 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             HhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC
Confidence            45777777764 33321 111122 2355677776654  23321 2222334566777777664 45555556666667


Q ss_pred             CCcEEEeecc-cCcccCChhccCCCCCceeecccc
Q 035702          152 NLIYFHVGNN-KLEGQIPKEIGSLLKLQTLALYYN  185 (202)
Q Consensus       152 ~L~~L~l~~n-~~~g~~p~~~~~l~~L~~L~l~~N  185 (202)
                      +|++|++++| .+++.....+.++++|+.|+++++
T Consensus       201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            7777777663 455444445566666777766655

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=6e-08  Score=77.94  Aligned_cols=86  Identities=22%  Similarity=0.236  Sum_probs=38.6

Q ss_pred             CCCcEEEccCCcCccc----Cchhcc-CCCCCCeEeCCCCcCccC----cChhccCCCCCcEEEeecccCcccCCh----
Q 035702          103 SFLRYINLADNGFHGE----IPQEIG-NLLRLEKLALPNNSFSGT----IPTNLSRCSNLIYFHVGNNKLEGQIPK----  169 (202)
Q Consensus       103 ~~L~~L~l~~n~l~~~----~p~~~~-~l~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~g~~p~----  169 (202)
                      ++|++|++++|.++..    ++..+. ..+.|++|++++|.++..    +.+.+..+++|++|++++|+++.....    
T Consensus       340 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~  419 (460)
T d1z7xw1         340 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE  419 (460)
T ss_dssp             SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHH
T ss_pred             cchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHH
Confidence            4455555555555421    122222 234455555555555421    223344445555555555555422111    


Q ss_pred             hcc-CCCCCceeeccccccc
Q 035702          170 EIG-SLLKLQTLALYYNYLT  188 (202)
Q Consensus       170 ~~~-~l~~L~~L~l~~N~l~  188 (202)
                      .+. +..+|+.|++.+|.+.
T Consensus       420 ~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         420 SVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHTSTTCCCCEEECTTCCCC
T ss_pred             HHHhCCCccCEEECCCCCCC
Confidence            111 2224555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.24  E-value=1.7e-07  Score=73.55  Aligned_cols=111  Identities=19%  Similarity=0.260  Sum_probs=75.7

Q ss_pred             CcEEEEEcCCCCCccc----cCccccCCCCCcEEEccCCcCccc-----CchhccCCCCCCeEeCCCCcCccC----cCh
Q 035702           79 QRVTELNLSSQRIGGI----LSPYVGNLSFLRYINLADNGFHGE-----IPQEIGNLLRLEKLALPNNSFSGT----IPT  145 (202)
Q Consensus        79 ~~v~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~-----~p~~~~~l~~L~~L~ls~n~l~~~----~p~  145 (202)
                      ..++.+.++++.+...    +...+...+.|+.+++++|.++..     +...+...++|+.|++++|.++..    +..
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~  237 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  237 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence            3466677777666532    223355677889999999887632     233456678899999999988643    345


Q ss_pred             hccCCCCCcEEEeecccCcccCC----hhccC--CCCCceeecccccccc
Q 035702          146 NLSRCSNLIYFHVGNNKLEGQIP----KEIGS--LLKLQTLALYYNYLTR  189 (202)
Q Consensus       146 ~l~~l~~L~~L~l~~n~~~g~~p----~~~~~--l~~L~~L~l~~N~l~g  189 (202)
                      .+..+++|++|++++|.+++.-.    ..+..  .+.|++|++++|+++.
T Consensus       238 ~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            56788899999999998874322    22332  3578999999998863

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.86  E-value=4.1e-06  Score=58.90  Aligned_cols=109  Identities=14%  Similarity=0.160  Sum_probs=78.4

Q ss_pred             CcEEEEEcCCC-CCccc----cCccccCCCCCcEEEccCCcCcccC----chhccCCCCCCeEeCCCCcCccC----cCh
Q 035702           79 QRVTELNLSSQ-RIGGI----LSPYVGNLSFLRYINLADNGFHGEI----PQEIGNLLRLEKLALPNNSFSGT----IPT  145 (202)
Q Consensus        79 ~~v~~L~l~~~-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----p~~~~~l~~L~~L~ls~n~l~~~----~p~  145 (202)
                      +.+++|+|+++ .++..    +-..+...+.|+.|++++|.+....    ...+...+.|+.|++++|.++..    +-.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            57899999874 46532    2345677788999999999987432    23455578899999999999853    224


Q ss_pred             hccCCCCCcEEEeecccCccc-------CChhccCCCCCceeecccccc
Q 035702          146 NLSRCSNLIYFHVGNNKLEGQ-------IPKEIGSLLKLQTLALYYNYL  187 (202)
Q Consensus       146 ~l~~l~~L~~L~l~~n~~~g~-------~p~~~~~l~~L~~L~l~~N~l  187 (202)
                      .+...++|++|++++|.+...       +...+..-+.|+.|+++.+..
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            567778999999999876521       334455678899999877644

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.54  E-value=3e-05  Score=54.31  Aligned_cols=88  Identities=15%  Similarity=0.155  Sum_probs=65.5

Q ss_pred             CCCCCcEEEccCC-cCccc----CchhccCCCCCCeEeCCCCcCccC----cChhccCCCCCcEEEeecccCccc----C
Q 035702          101 NLSFLRYINLADN-GFHGE----IPQEIGNLLRLEKLALPNNSFSGT----IPTNLSRCSNLIYFHVGNNKLEGQ----I  167 (202)
Q Consensus       101 ~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~g~----~  167 (202)
                      .-+.|++|+++++ .++..    +-..+...++|+.|++++|.++..    +...+...+.|++|++++|.++..    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4578999999974 46532    233566778999999999998743    224455678999999999999743    2


Q ss_pred             ChhccCCCCCceeeccccccc
Q 035702          168 PKEIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       168 p~~~~~l~~L~~L~l~~N~l~  188 (202)
                      -..+..-+.|++|++++|.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHhCCcCCEEECCCCcCC
Confidence            234667788999999998654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.19  E-value=3.9e-05  Score=53.51  Aligned_cols=110  Identities=14%  Similarity=0.202  Sum_probs=77.8

Q ss_pred             CcEEEEEcCC-CCCccc----cCccccCCCCCcEEEccCCcCcccC----chhccCCCCCCeEeCCCCcCccC----cCh
Q 035702           79 QRVTELNLSS-QRIGGI----LSPYVGNLSFLRYINLADNGFHGEI----PQEIGNLLRLEKLALPNNSFSGT----IPT  145 (202)
Q Consensus        79 ~~v~~L~l~~-~~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----p~~~~~l~~L~~L~ls~n~l~~~----~p~  145 (202)
                      +.+++|++++ +.++..    +-..+...++|++|++++|.++...    -..+...++++.+++++|.++..    +-.
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            5788999987 456532    3345667889999999999987432    23455678999999999988743    235


Q ss_pred             hccCCCCCcEEEee--cccCcc----cCChhccCCCCCceeeccccccc
Q 035702          146 NLSRCSNLIYFHVG--NNKLEG----QIPKEIGSLLKLQTLALYYNYLT  188 (202)
Q Consensus       146 ~l~~l~~L~~L~l~--~n~~~g----~~p~~~~~l~~L~~L~l~~N~l~  188 (202)
                      .+...++|+.++|.  +|.+..    .+...+...+.|+.|++..+...
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence            56677889876664  566643    23445667889999999877543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.14  E-value=0.0014  Score=45.19  Aligned_cols=90  Identities=16%  Similarity=0.138  Sum_probs=64.2

Q ss_pred             ccCCCCCcEEEccC-CcCccc----CchhccCCCCCCeEeCCCCcCccCcC----hhccCCCCCcEEEeecccCccc---
Q 035702           99 VGNLSFLRYINLAD-NGFHGE----IPQEIGNLLRLEKLALPNNSFSGTIP----TNLSRCSNLIYFHVGNNKLEGQ---  166 (202)
Q Consensus        99 l~~l~~L~~L~l~~-n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~~p----~~l~~l~~L~~L~l~~n~~~g~---  166 (202)
                      ....+.|++|++++ +.++..    +-..+...++|+.|++++|.++...-    ..+...++++.+++.+|.++..   
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            34568899999998 456532    23445678999999999999875322    3456678999999999988633   


Q ss_pred             -CChhccCCCCCceeec--cccccc
Q 035702          167 -IPKEIGSLLKLQTLAL--YYNYLT  188 (202)
Q Consensus       167 -~p~~~~~l~~L~~L~l--~~N~l~  188 (202)
                       +-..+...++|+.+++  ++|.+.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHhCccccEEeeccCCCcCc
Confidence             2245667788887555  566665