Citrus Sinensis ID: 035738

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
Protein Sequence
MDSIVDGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccHHHHHHHccccccccccHHHHHHHHHHHcccEEEEEccccccccEEccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHccccEEEEcccccccccccccccccEEccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHccccccEEEEEccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccHHHHccHHHHHHHHHcccHHHHHHHHHHHccHHHHHHcccccccEcHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEcccccEEEEEEcHHHccccccEccEccHHHHHHHccHHHHHHHccHHHHHHHcccHHHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHcccccccEEEEEcHHHHcccccccEEccHHHccHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHccccccEEHHHHHHHHHHcccccEEEEEEEccEEEEEEEc
Coil and Loop (DISEMBL)
mdsivdgerdqSFAYANQLARGIVLPMAMQAVYELGIFEIidkagpgaklsaSDIAAQLttknkdapMMLDRILRLLASYSVVECsldasgarrlyslnsvskyyvpnkdgvslgpgiqithDKVFLECWSQLKHAILeggipfnrahgmhtfeyagldpgfnkhFNTVMYNYTSLVMSNILesykgfdnIKQLVDVGGGIGVTLQAIttkypyikginfdlphviehvpphpcmwilhdwndEHCLKLLKNCYKSIPEDGKVIAVELmlpevpntsiesksnsdsDVLMMIqspggkertrhefmtlatgagfsgISCERAIGNLWVMEFYK
Flexible Loop (DISEMBL)
mdsivdgerdqSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLttknkdapMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPevpntsiesksnsdsdVLMMIQSPGGKERTRHEFMTLatgagfsgiscERAIGNLWVMEFYK
Low Complexity Region (SEG)
MDSIVDGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK
Disordered region (IsUnstruct)
************FAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLP********************************EFMTLATGAGFSGISCERAIGNLWVMEFY*
Disordered Region (DISOPRED)
**********QSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK
Disordered Region (DISEMBL)
********RDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK
Disordered Region (DISPRO)
******GERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSIVDGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	333	2.2.26 [Sep-21-2011]
A9X7L0	364	Anthranilate N-methyltran	N/A	no	0.963	0.881	0.497	1e-97
Q9FQY8	359	Caffeic acid 3-O-methyltr	N/A	no	0.975	0.905	0.494	2e-97
Q8W013	363	Caffeic acid 3-O-methyltr	N/A	no	0.978	0.898	0.498	1e-96
Q43046	365	Caffeic acid 3-O-methyltr	N/A	no	0.972	0.887	0.512	9e-96
Q43047	364	Caffeic acid 3-O-methyltr	N/A	no	0.972	0.890	0.518	1e-95
Q00763	365	Caffeic acid 3-O-methyltr	N/A	no	0.972	0.887	0.510	2e-95
Q8LL87	350	Caffeic acid 3-O-methyltr	N/A	no	0.975	0.928	0.488	3e-95
Q43609	365	Caffeic acid 3-O-methyltr	N/A	no	0.972	0.887	0.507	3e-95
Q9XGW0	361	Caffeic acid 3-O-methyltr	N/A	no	0.987	0.911	0.480	6e-95
O81646	359	Caffeic acid 3-O-methyltr	N/A	no	0.975	0.905	0.491	7e-95

>sp|A9X7L0|ANMT_RUTGR Anthranilate N-methyltransferase OS=Ruta graveolens PE=1 SV=1

 Score =  356 bits (914), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 170/342 (49%), Positives = 233/342 (68%), Gaps = 21/342 (6%)

Query: 12  SFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLD 71
           S++ A QL+  IVLPMA Q+  +LG+FEII KA PG +LSAS+IA  L  +N  AP+MLD
Sbjct: 24  SYSRAMQLSMAIVLPMATQSAIQLGVFEIIAKA-PGGRLSASEIATILQAQNPKAPVMLD 82

Query: 72  RILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWS 131
           R+LRLL S+ V++CS+      RLY L SVSKY+VP++DG SLG  + +  DKVF+E W 
Sbjct: 83  RMLRLLVSHRVLDCSVSGPAGERLYGLTSVSKYFVPDQDGASLGNFMALPLDKVFMESWM 142

Query: 132 QLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNI 191
            +K A++EGGIPFNR HGMH FEYA  +  F+  ++  M+N++++ +  ILE YKGF+N+
Sbjct: 143 GVKGAVMEGGIPFNRVHGMHIFEYASSNSKFSDTYHRAMFNHSTIALKRILEHYKGFENV 202

Query: 192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM---------------- 235
            +LVDVGGG+GVTL  I +KYP+I+ INFDLPHV++    +P +                
Sbjct: 203 TKLVDVGGGLGVTLSMIASKYPHIQAINFDLPHVVQDAASYPGVEHVGGNMFESVPEGDA 262

Query: 236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMM 291
               WILH W+DE CL++LKNCYK+ PE+GKVI +  ++PE P  S  ++  S  DVL+M
Sbjct: 263 ILMKWILHCWDDEQCLRILKNCYKATPENGKVIVMNSVVPETPEVSSSARETSLLDVLLM 322

Query: 292 IQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
            +  GG+ERT+ EF  LA GAGF GI+    + NL +MEF+K
Sbjct: 323 TRDGGGRERTQKEFTELAIGAGFKGINFACCVCNLHIMEFFK 364

Involved in the biosynthesis of acridine alkaloids. N-methyltransferase with a strict substrate specificity for anthranilate. No activity with anthranilic acid methyl ester, anthraniloyl CoA, 3- or 4-amino-benzoic acid, salicylic acid, catechol, eugenol, caffeic acid, quercetin, theobromin, theophyllin, putrescine and nicotinic acid among others.
Ruta graveolens (taxid: 37565)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1EC: 1

>sp|Q9FQY8|COMT1_CAPAN Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2

 Score =  355 bits (912), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 172/348 (49%), Positives = 226/348 (64%), Gaps = 23/348 (6%)

Query: 9   RDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPM 68
            D++F +A QLA   VLPM +++  EL + EI+ KAGPGA +S S++AAQL TKN +AP+
Sbjct: 12  EDEAFLFAMQLASASVLPMVLKSALELDLLEIMAKAGPGAAISPSELAAQLPTKNPEAPV 71

Query: 69  MLDRILRLLASYSVVECSLDA---SGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKV 125
           MLDR+LRLLA+YSV+ C+L         RLYSL  V K    N DGVS+ P + +  DKV
Sbjct: 72  MLDRMLRLLATYSVLNCTLRTLPDGRVERLYSLAPVCKLLTKNADGVSVAPLLLMNQDKV 131

Query: 126 FLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESY 185
            +E W  L  A+L+GG+PFN+A+GM  FEY G DP FNK FN  M +++++ M  ILE Y
Sbjct: 132 LMESWYHLTDAVLDGGVPFNKAYGMTAFEYHGTDPRFNKVFNRGMSDHSTMTMKKILEDY 191

Query: 186 KGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM---------- 235
           KGF+ +  +VDVGGG G T+  I +KYP IKGINFDL HVIE  P +P +          
Sbjct: 192 KGFEGLNSIVDVGGGTGATVNMIVSKYPSIKGINFDLSHVIEDAPAYPGVEHVGRDMFVS 251

Query: 236 ----------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSD 285
                     WI HDW+DEHCLK LKNCY+++P +GKV+  E +LPE P+TS  +K+   
Sbjct: 252 VPKADAIFMKWICHDWSDEHCLKFLKNCYEALPANGKVLVAECILPETPDTSAATKNAVH 311

Query: 286 SDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
            D++M+  +PGGKERT  EF  LA GAGF+G          WVMEF+K
Sbjct: 312 VDIVMLAHNPGGKERTEKEFEALAKGAGFTGFRRACCAYQTWVMEFHK 359

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Capsicum annuum (taxid: 4072)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q8W013|COMT1_CATRO Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1

 Score =  353 bits (906), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 174/349 (49%), Positives = 229/349 (65%), Gaps = 23/349 (6%)

Query: 8   ERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAP 67
           E +++   A +LA   VLPM +++  EL + E+I K+GPGA +S S++AAQL T+N DAP
Sbjct: 15  EEEEACLSAMRLASASVLPMVLKSAIELDLLELIKKSGPGAYVSPSELAAQLPTQNPDAP 74

Query: 68  MMLDRILRLLASYSVVECSLDA---SGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDK 124
           +MLDRILRLLASYSV+ C+L      G  RLYSL  V K+   N+DGVS+   + +  DK
Sbjct: 75  VMLDRILRLLASYSVLNCTLKDLPDGGIERLYSLAPVCKFLTKNEDGVSMAALLLMNQDK 134

Query: 125 VFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILES 184
           V +E W  LK A+LEGGIPFN+A+GM  FEY G DP FNK FN  M N+++++M  ILE 
Sbjct: 135 VLMESWYHLKDAVLEGGIPFNKAYGMTAFEYHGKDPRFNKVFNQGMSNHSTIIMKKILEI 194

Query: 185 YKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM--------- 235
           Y+GF  +K +VDVGGG G TL  I +KYP IKGINFDLPHVIE  P +P +         
Sbjct: 195 YQGFQGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDAPSYPGVDHVGGDMFV 254

Query: 236 -----------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNS 284
                      WI HDW+D HCLK LKNC++++PE+GKVI  E +LPE P++++ +++  
Sbjct: 255 SVPKGDAIFMKWICHDWSDAHCLKFLKNCHEALPENGKVILAECLLPEAPDSTLSTQNTV 314

Query: 285 DSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
             DV+M+  +PGGKERT  EF  LA GAGF G        N W+ME  K
Sbjct: 315 HVDVIMLAHNPGGKERTEKEFEALAKGAGFRGFIKVCCAYNSWIMELLK 363

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Catharanthus roseus (taxid: 4058)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43046|COMT1_POPKI Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1

 Score =  350 bits (898), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 178/347 (51%), Positives = 222/347 (63%), Gaps = 23/347 (6%)

Query: 10  DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMM 69
           +++  +A QLA   VLPM ++   EL + EI+ KAGPGA LS S+IA+ L TKN DAP+M
Sbjct: 17  EEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLSTSEIASHLPTKNPDAPVM 76

Query: 70  LDRILRLLASYSVVECSLDA---SGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVF 126
           LDRILRLLASYS++ CSL         RLY L  V K+   N+DGVS+ P   +  DKV 
Sbjct: 77  LDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDKVL 136

Query: 127 LECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYK 186
           +E W  LK AILEGGIPFN+A+GM  FEY G DP FNK FN  M +++++ M  ILE+YK
Sbjct: 137 MESWYYLKDAILEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYK 196

Query: 187 GFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM----------- 235
           GF+ +  LVDVGGG G  +  I +KYP IKGINFDLPHVIE  P +P +           
Sbjct: 197 GFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSV 256

Query: 236 ---------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDS 286
                    WI HDW+D HCLK LKNCY ++PE+GKVI VE +LP  P+TS+ +K     
Sbjct: 257 PNADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKVILVECILPVAPDTSLATKGVVHV 316

Query: 287 DVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
           DV+M+  +PGGKERT  EF  LA GAGF G        N  V+EF K
Sbjct: 317 DVIMLAHNPGGKERTEKEFEGLANGAGFQGFEVMCCAFNTHVIEFRK 363

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus kitakamiensis (taxid: 34292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43047|COMT3_POPKI Caffeic acid 3-O-methyltransferase 3 OS=Populus kitakamiensis GN=HOMT3 PE=3 SV=1

 Score =  350 bits (898), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 180/347 (51%), Positives = 219/347 (63%), Gaps = 23/347 (6%)

Query: 10  DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMM 69
           D+   +A QL    VLPM ++   EL + EI+ KAGPGA LS SDIA+ L TKN DAP+M
Sbjct: 16  DEEANFAMQLISSSVLPMVLKTAIELDLLEIMAKAGPGALLSPSDIASHLPTKNPDAPVM 75

Query: 70  LDRILRLLASYSVVECSLDA---SGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVF 126
           LDRILRLLASYS++ CSL         RLY L SV K+   N+DGVS+ P   +  DKV 
Sbjct: 76  LDRILRLLASYSILICSLRDLPDGKVERLYGLASVCKFLTKNEDGVSVSPLCLMNQDKVL 135

Query: 127 LECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYK 186
           +E W  LK AILEGGIPFN+A+GM  FEY G DP FNK FN  M +++ + M  ILESYK
Sbjct: 136 MESWYHLKDAILEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSKMAMKKILESYK 195

Query: 187 GFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM----------- 235
           GF+ +  LVDVGGG G  +  I +KYP IKGINFDLPHVI   P  P +           
Sbjct: 196 GFEGLASLVDVGGGTGAVVSTIVSKYPSIKGINFDLPHVIADAPAFPGVENVGGDMFVSV 255

Query: 236 ---------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDS 286
                    WI HDW+DEHCL+LLKNCY ++PE+GKVI VE +LP  P+TS+ +K     
Sbjct: 256 PKADAVFMKWICHDWSDEHCLRLLKNCYDALPENGKVILVECILPVAPDTSLATKGVMHV 315

Query: 287 DVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
           D +M+  +PGGKERT  EF  LA GAGF G        N  V+EF K
Sbjct: 316 DAIMLAHNPGGKERTDKEFEGLARGAGFKGFEVMCCAFNTHVIEFRK 362

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus kitakamiensis (taxid: 34292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1

 Score =  348 bits (894), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 177/347 (51%), Positives = 222/347 (63%), Gaps = 23/347 (6%)

Query: 10  DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMM 69
           +++  +A QLA   VLPM ++   EL + EI+ KAGPGA LS S+IA+ L TKN DAP+M
Sbjct: 17  EEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLSTSEIASHLPTKNPDAPVM 76

Query: 70  LDRILRLLASYSVVECSLDA---SGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVF 126
           LDRILRLLASYS++ CSL         RLY L  V K+   N+DGVS+ P   +  DKV 
Sbjct: 77  LDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDKVL 136

Query: 127 LECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYK 186
           +E W  LK AIL+GGIPFN+A+GM  FEY G DP FNK FN  M +++++ M  ILE+YK
Sbjct: 137 MESWYYLKDAILDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYK 196

Query: 187 GFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM----------- 235
           GF+ +  LVDVGGG G  +  I +KYP IKGINFDLPHVIE  P +P +           
Sbjct: 197 GFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSV 256

Query: 236 ---------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDS 286
                    WI HDW+D HCLK LKNCY ++PE+GKVI VE +LP  P+TS+ +K     
Sbjct: 257 PKADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKVILVECILPVAPDTSLATKGVVHV 316

Query: 287 DVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
           DV+M+  +PGGKERT  EF  LA GAGF G        N  V+EF K
Sbjct: 317 DVIMLAHNPGGKERTEKEFEGLAKGAGFQGFEVMCCAFNTHVIEFRK 363

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q8LL87|COMT1_COFCA Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1

 Score =  348 bits (893), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 170/348 (48%), Positives = 227/348 (65%), Gaps = 23/348 (6%)

Query: 9   RDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPM 68
            +++  +A  LA   VLPM +++  EL + E+I KAGPGA +S S++AAQL T N +AP+
Sbjct: 3   EEEACLFAMSLASASVLPMVLKSAIELDLLELIAKAGPGAYVSPSELAAQLPTHNPEAPI 62

Query: 69  MLDRILRLLASYSVVECSLDA---SGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKV 125
           MLDRILRLLA+YSV++C L+     G  RLY L  V K+   N DGVS+ P + +  DKV
Sbjct: 63  MLDRILRLLATYSVLDCKLNNLADGGVERLYGLAPVCKFLTKNADGVSMAPLLLMNQDKV 122

Query: 126 FLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESY 185
            +E W  LK A+L+GGIPFN+A+GM  FEY G DP FNK FN  M N++++ M  ILE Y
Sbjct: 123 LMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILEVY 182

Query: 186 KGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM---------- 235
           +GF+ +K +VDVGGG G TL  I +KYP IKGINF+LPHV+E  P H  +          
Sbjct: 183 RGFEGLKTVVDVGGGTGATLNMIISKYPTIKGINFELPHVVEDAPSHSGVEHVGGDMFVS 242

Query: 236 ----------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSD 285
                     WI HDW+D+HC KLLKNCY+++P++GKVI  E +LPE P+TS+ +++   
Sbjct: 243 VPKGDAIFMKWICHDWSDDHCRKLLKNCYQALPDNGKVILAECVLPEAPDTSLATQNVVH 302

Query: 286 SDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
            DV+M+  +PGGKERT  EF  LA GAGF       +  N W+ME  K
Sbjct: 303 VDVVMLAHNPGGKERTEKEFEALAKGAGFKEFRKVCSAVNTWIMELCK 350

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Coffea canephora (taxid: 49390)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43609|COMT1_PRUDU Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1

 Score =  348 bits (893), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 176/347 (50%), Positives = 227/347 (65%), Gaps = 23/347 (6%)

Query: 10  DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMM 69
           +++  +A QLA   VLPM ++A  EL + EI+ KAGPG  LS +DIA+QL TKN DAP+M
Sbjct: 17  EEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGVFLSPTDIASQLPTKNPDAPVM 76

Query: 70  LDRILRLLASYSVVECSLD--ASG-ARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVF 126
           LDR+LRLLASYS++  SL   A G   RLY L  V K+   N++GVS+ P   +  DKV 
Sbjct: 77  LDRMLRLLASYSILTYSLRTLADGKVERLYGLGPVCKFLTKNEEGVSIAPLCLMNQDKVL 136

Query: 127 LECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYK 186
           LE W  LK A+LEGGIPFN+A+GM  FEY G DP FNK FN  M +++++ M  ILE+YK
Sbjct: 137 LESWYHLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKVFNRGMADHSTITMKKILETYK 196

Query: 187 GFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM----------- 235
           GF+ +  +VDVGGG G  L  I +KYP IKGINFDLPHVIE  P +P +           
Sbjct: 197 GFEGLTSVVDVGGGTGAVLNMIVSKYPSIKGINFDLPHVIEDAPQYPGVEHVGGDMFVSV 256

Query: 236 ---------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDS 286
                    WI HDW+DEHCLK LKNCY ++P++GKVI  E +LP  P++S+ +K     
Sbjct: 257 PKGDAIFMKWICHDWSDEHCLKFLKNCYAALPDNGKVILGECILPVAPDSSLATKGVVHI 316

Query: 287 DVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
           DV+M+  +PGGKERT  EF  LA GAGF G +   +  N +V+EF K
Sbjct: 317 DVIMLAHNPGGKERTEQEFQALAKGAGFQGFNVACSAFNTYVIEFLK 363

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Prunus dulcis (taxid: 3755)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9XGW0|COMT1_OCIBA Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1

 Score =  347 bits (891), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 169/352 (48%), Positives = 224/352 (63%), Gaps = 23/352 (6%)

Query: 5   VDGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNK 64
           ++ + +++F +A QLA   VLPM +++  EL + E+I K+G GA +S  D+AAQL T N 
Sbjct: 10  INSDEEENFLFAMQLASASVLPMVLKSAIELDLLELIKKSGAGAFVSPVDLAAQLPTTNP 69

Query: 65  DAPMMLDRILRLLASYSVVECSLDA---SGARRLYSLNSVSKYYVPNKDGVSLGPGIQIT 121
           DA +MLDRILRLL SY+++EC L      G  RLY L  V K+   N+DGVS+ P   + 
Sbjct: 70  DAHVMLDRILRLLTSYAILECRLKTLPDGGVERLYGLAPVCKFLTKNEDGVSMAPLTLMN 129

Query: 122 HDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNI 181
            DKV +E W  L  A+++GGIPFN+A+GM  FEY G DP FNK FN  M N++++ M  I
Sbjct: 130 QDKVLMESWYHLSDAVVDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKI 189

Query: 182 LESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM------ 235
           LE+Y GFD +K +VDVGGG G TL  I +KYP IKGINFDLPHVIE  P +P +      
Sbjct: 190 LETYTGFDGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGD 249

Query: 236 --------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESK 281
                         WI HDW+DEHC+K LKNCY ++P++GKVI  E +LPE P+T + +K
Sbjct: 250 MFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYDALPQNGKVILAECVLPEAPDTGLATK 309

Query: 282 SNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
           +    DV+M+  +PGGKERT  EF  LA  AGF   +      N W+ME  K
Sbjct: 310 NVVHIDVIMLAHNPGGKERTEKEFQGLAKAAGFKQFNKACCAYNTWIMELLK 361

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|O81646|COMT1_CAPCH Caffeic acid 3-O-methyltransferase OS=Capsicum chinense GN=COMT PE=2 SV=1

 Score =  347 bits (890), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 171/348 (49%), Positives = 224/348 (64%), Gaps = 23/348 (6%)

Query: 9   RDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPM 68
            D++F +A QLA   VLPM ++A  EL + EI+ K+GPGA +S S++AAQL TKN +AP+
Sbjct: 12  EDEAFVFAMQLASASVLPMVLKATVELDLLEIMAKSGPGAFISPSELAAQLPTKNPEAPV 71

Query: 69  MLDRILRLLASYSVVECSLDA---SGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKV 125
           MLDR+ RLLA+YSV+ C+L         RLYSL  V K+   N DGVS+ P + +  DKV
Sbjct: 72  MLDRMFRLLATYSVLNCTLRTLPDGRVERLYSLAPVCKFLTKNGDGVSIAPILLMNQDKV 131

Query: 126 FLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESY 185
            +E W  L  A+L+GG+PFN+A+GM TFEY G DP FNK FN  M ++T+L M  ILE Y
Sbjct: 132 LMESWYHLTDAVLDGGVPFNKAYGMTTFEYHGTDPRFNKVFNCGMSDHTTLSMKKILEDY 191

Query: 186 KGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM---------- 235
            GF+ +  +VDVGGG G T+  I +KYP IKGINFDLPHVI   P +P +          
Sbjct: 192 TGFEGLNSIVDVGGGTGATVNMIVSKYPSIKGINFDLPHVIRDAPSYPGVEQVGGDMFVS 251

Query: 236 ----------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSD 285
                     WI HDW+D+HC+KLLKNCY+++P +GKVI VE +LPE P+TS  +KS   
Sbjct: 252 VPKADAIFMKWICHDWSDDHCIKLLKNCYEALPANGKVIIVECILPEAPDTSAATKSKVH 311

Query: 286 SDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
            D++M+  +PGGKERT  +F  LA    FS         + WVMEF K
Sbjct: 312 GDIIMLAHNPGGKERTEKDFEALANWGWFSRFRKVCCAYHTWVMEFNK 359

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Capsicum chinense (taxid: 80379)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
145695037	353	O-methyltransferase [Citrus sinensis x C	1.0	0.943	0.835	1e-170
224128073	358	catechol o-methyltransferase related [Po	0.981	0.913	0.613	1e-120
224068173	359	catechol o-methyltransferase [Populus tr	0.987	0.916	0.579	1e-113
284437809	377	O-methyltransferase-like protein [Prunus	0.966	0.854	0.566	1e-111
357512657	362	Caffeic acid 3-O-methyltransferase [Medi	0.978	0.900	0.541	1e-107
388494808	362	unknown [Medicago truncatula]	0.978	0.900	0.541	1e-107
255548061	359	o-methyltransferase, putative [Ricinus c	0.981	0.910	0.537	1e-107
224068181	336	catechol o-methyltransferase [Populus tr	0.942	0.934	0.581	1e-106
268528131	356	caffeic acid O-methyltransferase 3 [Goss	1.0	0.935	0.539	1e-106
356520217	372	PREDICTED: anthranilate N-methyltransfer	0.978	0.876	0.524	1e-105

>gi|145695037|gb|ABP94018.1| O-methyltransferase [Citrus sinensis x Citrus reticulata]

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 295/353 (83%), Positives = 306/353 (86%), Gaps = 20/353 (5%)

Query: 1   MDSIVDGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLT 60
           MDSIVDGERDQSFAYANQLA G +LPMA+Q VYELGIFEI+DK GPGAKL ASDIAAQL 
Sbjct: 1   MDSIVDGERDQSFAYANQLAMGTMLPMAIQTVYELGIFEILDKVGPGAKLCASDIAAQLL 60

Query: 61  TKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQI 120
           TKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGV LGP IQI
Sbjct: 61  TKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVLLGPLIQI 120

Query: 121 THDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSN 180
             DKVFL+ WSQLK AILEGGIPFNRAHG+H FEY GLDP FNKHFNT MYNYTSLVMSN
Sbjct: 121 VQDKVFLKSWSQLKDAILEGGIPFNRAHGVHVFEYTGLDPKFNKHFNTAMYNYTSLVMSN 180

Query: 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCMW---- 236
           ILESYKGFDNIKQLVDVGG +G+TLQAITTKYPYIKGINFD PHVI+H PPHP +     
Sbjct: 181 ILESYKGFDNIKQLVDVGGSLGITLQAITTKYPYIKGINFDQPHVIDHAPPHPRIEHVGG 240

Query: 237 ----------------ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIES 280
                           +LHDWNDEHCLKLLKNCYKSIPEDGKVI VE MLPEVPNTSIES
Sbjct: 241 DMFQSVPKGDAIFMKSVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESMLPEVPNTSIES 300

Query: 281 KSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
           KSNS  DVLMMIQSPGGKERTRHEFMTLATGAGF GISCE AIG+LWVMEFYK
Sbjct: 301 KSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFGGISCELAIGSLWVMEFYK 353

Source: Citrus sinensis x Citrus reticulata

Species: Citrus sinensis x Citrus reticulata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128073|ref|XP_002320237.1| catechol o-methyltransferase related [Populus trichocarpa] gi|118481911|gb|ABK92890.1| unknown [Populus trichocarpa] gi|222861010|gb|EEE98552.1| catechol o-methyltransferase related [Populus trichocarpa]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/349 (61%), Positives = 258/349 (73%), Gaps = 22/349 (6%)

Query: 5   VDGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNK 64
           VD  +D++F YA QLA   VLPM M +  +LGIFEII KAGP AKLSASD+AAQL TKN 
Sbjct: 12  VDEAKDENFGYAMQLALSSVLPMTMYSAIQLGIFEIIAKAGPDAKLSASDVAAQLPTKNP 71

Query: 65  DAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDK 124
           DAPMMLDRILRLLAS+ V+ CS+D  G+ RLYSL  VSK+YV NKDGVSLGP + +  D 
Sbjct: 72  DAPMMLDRILRLLASHDVLGCSVD--GSERLYSLAPVSKHYVRNKDGVSLGPFMALIQDN 129

Query: 125 VFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILES 184
           VFL+ WSQLK A+LEGG+ F+R HG H FEY GLDP FN+ FNT MYN T++V+ N+LE+
Sbjct: 130 VFLQSWSQLKDAVLEGGVAFDRVHGAHAFEYPGLDPRFNQVFNTAMYNQTTVVLENMLEA 189

Query: 185 YKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM--------- 235
           Y GF N+KQLV++GGG+G T++AI +KYP IKGINFDLPHVIEH P  P +         
Sbjct: 190 YTGFKNLKQLVEIGGGMGHTIKAIISKYPQIKGINFDLPHVIEHAPSCPGVEHVGGDMFE 249

Query: 236 -----------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNS 284
                      WILHDW+D+HCLKLLKNCYK+IP++GKVI +E +L     TS  +++ S
Sbjct: 250 SVPKGDAIFLKWILHDWSDDHCLKLLKNCYKAIPDNGKVIVMESVLSITAKTSPAARAIS 309

Query: 285 DSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
             DVLMM Q+PGGKERT HEFM LATGAGF GI  E  + N WVMEF+K
Sbjct: 310 QLDVLMMTQNPGGKERTEHEFMALATGAGFRGIKYEAFVCNFWVMEFFK 358

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068173|ref|XP_002302676.1| catechol o-methyltransferase [Populus trichocarpa] gi|222844402|gb|EEE81949.1| catechol o-methyltransferase [Populus trichocarpa]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/352 (57%), Positives = 251/352 (71%), Gaps = 23/352 (6%)

Query: 3   SIVDGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTK 62
           S VD  +D++F YA QLA   VLPM +    +LGIFEII KAGP  KLSA+DIAA+L T 
Sbjct: 10  SQVDEAKDENFGYAMQLALSSVLPMTLHTAIQLGIFEIIAKAGPDVKLSAADIAAKLPTD 69

Query: 63  NKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITH 122
           N D P MLDRILRLLAS+ V+ C +D  G+ R YSL  VS Y+V N++GVSL P + + H
Sbjct: 70  NPDTPKMLDRILRLLASHQVLCCFVD--GSERFYSLAPVSMYFVRNQNGVSLAPFMALIH 127

Query: 123 DKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNIL 182
           + V L+ WSQLK A+LEGG+ F+R HG+H FEY GLDP FN+ FNT MYN T++V  N+L
Sbjct: 128 ENVILQSWSQLKDAVLEGGVAFHRVHGVHAFEYNGLDPRFNQVFNTAMYNQTTVVNGNML 187

Query: 183 ESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM------- 235
           E Y GF N+KQLVD+GGG+G T++A+T+KYP IKGINFDLPHVIEH P +P +       
Sbjct: 188 EKYNGFKNLKQLVDIGGGLGHTMKAVTSKYPQIKGINFDLPHVIEHAPAYPGVEHVGGDM 247

Query: 236 -------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKS 282
                        WILH+W+D+HCLKLLKNCYK+IPEDGKVI +E +LP    TS  +K+
Sbjct: 248 FESVPKGDAIFLKWILHNWSDDHCLKLLKNCYKAIPEDGKVIVMESVLPITAKTSPAAKA 307

Query: 283 NSDSDVLMMI-QSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
            S  DVLMM+ Q+PGGKERT  EFM LAT AGF GI  E  + N WVMEF+K
Sbjct: 308 ISQLDVLMMMSQNPGGKERTEDEFMALATAAGFRGIKFETFVCNFWVMEFFK 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284437809|gb|ADB85561.1| O-methyltransferase-like protein [Prunus mume]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/348 (56%), Positives = 252/348 (72%), Gaps = 26/348 (7%)

Query: 12  SFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLD 71
           SF YA QL     L M++Q+  +LG+F+II + GP AKLS+S IAA++ TKN +APMM+D
Sbjct: 30  SFCYAMQLVGSSALSMSLQSAIKLGVFDIIAREGPDAKLSSSGIAAKIGTKNPEAPMMVD 89

Query: 72  RILRLLASYSVVECSLDASGA----RRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFL 127
           RILRLL S+SV+ CS  A+      +R+YSL  VSKY+V +++G SLGP + +  DKVF+
Sbjct: 90  RILRLLTSHSVLNCSAVAANGGSDFQRVYSLGPVSKYFVSDEEGGSLGPSMTLIQDKVFM 149

Query: 128 ECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKG 187
           E WSQLK A++EGGIPFNR HGMH FEY GLDP FN+ FNT M+N+T++V+  +L  YKG
Sbjct: 150 ESWSQLKDAVVEGGIPFNRVHGMHAFEYPGLDPRFNQVFNTAMFNHTTIVIKKLLHIYKG 209

Query: 188 FD--NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM---------- 235
            +  N+ QLVDVGGG+GVTL  IT++Y +IKGINFDLPHV+ H P +P +          
Sbjct: 210 LEDKNLTQLVDVGGGLGVTLNLITSRYQHIKGINFDLPHVVNHAPSYPGVEHVGGDMFAS 269

Query: 236 ----------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSD 285
                     WILHDW+DEHCLKLLKNCYK+IP++GKVI VE +LP +P TS  +K+ S 
Sbjct: 270 VPSGDAIFMKWILHDWSDEHCLKLLKNCYKAIPDNGKVIVVEALLPAMPETSTATKTTSQ 329

Query: 286 SDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
            DV+MM Q+PGGKER+  EFM LATGAGFSGI  E  + N WVMEF+K
Sbjct: 330 LDVVMMTQNPGGKERSEQEFMALATGAGFSGIRYECFVCNFWVMEFFK 377

Source: Prunus mume

Species: Prunus mume

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512657|ref|XP_003626617.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] gi|87240860|gb|ABD32718.1| O-methyltransferase, family 2; Dimerisation [Medicago truncatula] gi|355501632|gb|AES82835.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/351 (54%), Positives = 249/351 (70%), Gaps = 25/351 (7%)

Query: 8   ERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAP 67
           E ++SF+YA QL+  IVL MA+Q+  ELG+FE++ KAG    LS+ +IA++L+  N DAP
Sbjct: 12  EDEESFSYAVQLSNSIVLSMALQSAIELGVFEVLQKAGRDTPLSSDEIASRLSCTNPDAP 71

Query: 68  MMLDRILRLLASYSVVECSL-----DASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITH 122
            MLDRIL LLAS+SV+ CS+     +     RLY++ SV+K++ PN DGVSLGP I +  
Sbjct: 72  KMLDRILALLASHSVLNCSVHPDQHNLGSFHRLYAMTSVAKFFAPNSDGVSLGPLIALHQ 131

Query: 123 DKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNIL 182
           DK++L+ WSQLK AI EGGIPFNR +G + FEYA +D  FN+ FNT M N+T++VM+ +L
Sbjct: 132 DKIYLQSWSQLKDAIREGGIPFNRVYGTNDFEYASIDSRFNQVFNTAMINHTTIVMNKVL 191

Query: 183 ESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM------- 235
           +SYKGF+++K+LVDVGGG+GV +  IT+K+P+I GINFDLPHVI+H P +P +       
Sbjct: 192 QSYKGFEDVKRLVDVGGGLGVNINLITSKHPHIHGINFDLPHVIQHAPSYPGVEHVGGDM 251

Query: 236 -------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKS 282
                        WILHDW+DE CLKLLKNCY +IP+DGKVI +E +L  +P  +   K 
Sbjct: 252 FETVPKADAIFMKWILHDWSDEQCLKLLKNCYDAIPDDGKVIVLEAVLSIIPENNAAWKF 311

Query: 283 NSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
            + SDVLMM QSPGGKERT  EFM LA GAGFSGI  E  +   WVMEF+K
Sbjct: 312 AAQSDVLMMTQSPGGKERTEQEFMDLANGAGFSGIRYECYVHTFWVMEFFK 362

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494808|gb|AFK35470.1| unknown [Medicago truncatula]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/351 (54%), Positives = 249/351 (70%), Gaps = 25/351 (7%)

Query: 8   ERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAP 67
           E ++SF+YA QL+  IVL MA+Q+  ELG+FE++ KAG    LS+ +IA++L+  N DAP
Sbjct: 12  EDEESFSYAVQLSNSIVLSMALQSAIELGVFEVLQKAGRDTPLSSDEIASRLSCTNPDAP 71

Query: 68  MMLDRILRLLASYSVVECSL-----DASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITH 122
            MLDRIL LLAS+SV+ CS+     +     RLY++ SV+K++ PN DGVSLGP I +  
Sbjct: 72  KMLDRILALLASHSVLNCSVHPDQHNLGSFHRLYAMTSVAKFFAPNSDGVSLGPLIALHQ 131

Query: 123 DKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNIL 182
           DK++L+ WSQLK AI EGGIPFNR +G + FEYA +D  FN+ FNT M N+T++VM+ +L
Sbjct: 132 DKIYLQSWSQLKDAIREGGIPFNRVYGTNDFEYASIDSRFNQVFNTAMINHTTIVMNKVL 191

Query: 183 ESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM------- 235
           +SYKGF+++K+LVDVGGG+GV +  IT+K+P+I GINFDLPHVI+H P +P +       
Sbjct: 192 QSYKGFEDVKRLVDVGGGLGVNVNLITSKHPHIHGINFDLPHVIQHAPSYPGVEHVGGDM 251

Query: 236 -------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKS 282
                        WILHDW+DE CLKLLKNCY +IP+DGKVI +E +L  +P  +   K 
Sbjct: 252 FETVPKADAIFMKWILHDWSDEQCLKLLKNCYDAIPDDGKVIVLEAVLSIIPENNAAWKF 311

Query: 283 NSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
            + SDVLMM QSPGGKERT  EFM LA GAGFSGI  E  +   WVMEF+K
Sbjct: 312 AAQSDVLMMTQSPGGKERTEQEFMDLANGAGFSGIRYECYVHTFWVMEFFK 362

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548061|ref|XP_002515087.1| o-methyltransferase, putative [Ricinus communis] gi|223545567|gb|EEF47071.1| o-methyltransferase, putative [Ricinus communis]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/350 (53%), Positives = 254/350 (72%), Gaps = 23/350 (6%)

Query: 5   VDGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL-TTKN 63
           +D E D++F YA QLA G  LPM++ A  ELG+FEII KAGP +KLSAS+I A++   +N
Sbjct: 12  IDEEHDENFGYAMQLALGSALPMSLHAAIELGVFEIIAKAGPESKLSASEITAEIPDVQN 71

Query: 64  KDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHD 123
            DA + LDR+LRLLAS++V+ CSL+  G  RLYSLN VSKY+VPN+DG+SLGP + +  D
Sbjct: 72  PDAAITLDRVLRLLASHNVLGCSLN--GLERLYSLNPVSKYFVPNQDGISLGPFMALIQD 129

Query: 124 KVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILE 183
           KVFL+ W++LK A+LEGG PFN+ HG H F Y+GLD  FN  FNT M+++T+LV++ ILE
Sbjct: 130 KVFLDSWTKLKDAVLEGGSPFNKFHGTHCFGYSGLDSRFNHVFNTAMFHHTNLVITKILE 189

Query: 184 SYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM-------- 235
           +YKGF  +KQL+DVGGG+G TL+AI +KYP++KGINFDLPHV+++ P  P +        
Sbjct: 190 TYKGFKQLKQLIDVGGGLGHTLKAIISKYPHLKGINFDLPHVVKYAPAIPGVEHVAGDMF 249

Query: 236 ------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSN 283
                       WILHDW+DEHCL+LLKNCY+++P+DGKVI ++ +LP +P T   +K+N
Sbjct: 250 ESVPKGEAIFMKWILHDWSDEHCLRLLKNCYEALPDDGKVIVMDAVLPVMPETGKAAKAN 309

Query: 284 SDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
             +D+++M    GG ERT HEF+ +AT AGF GI       N W+MEF+K
Sbjct: 310 FQTDLVVMTVYEGGTERTEHEFLAMATAAGFRGIRYVCCACNFWIMEFFK 359

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068181|ref|XP_002302677.1| catechol o-methyltransferase [Populus trichocarpa] gi|222844403|gb|EEE81950.1| catechol o-methyltransferase [Populus trichocarpa]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/337 (58%), Positives = 239/337 (70%), Gaps = 23/337 (6%)

Query: 18  QLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLL 77
           QLA   VLPM +    +LGIFEII KAGP  KLSA+DIAA+L T N D P MLDRILRLL
Sbjct: 2   QLALSSVLPMTLHTAIQLGIFEIIAKAGPDVKLSAADIAAKLPTDNPDTPKMLDRILRLL 61

Query: 78  ASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAI 137
           AS+ V+ C +D  G+ R YSL  VS Y+V N++GVSL P + +  + V L+ WSQLK A+
Sbjct: 62  ASHQVLCCFVD--GSERFYSLAPVSMYFVRNQNGVSLAPFMALIQENVVLQSWSQLKDAV 119

Query: 138 LEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDV 197
           LEGG+ F+R HG+H FEY GLDP FN+ FNT MYN T++V   +LE Y GF N+KQLVD+
Sbjct: 120 LEGGVAFHRVHGVHGFEYNGLDPKFNQVFNTAMYNQTTVVNGFMLEKYNGFKNLKQLVDI 179

Query: 198 GGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM--------------------WI 237
           GGG+G T++AIT+KYP+IKGINFDLPHVIEH P +P +                    WI
Sbjct: 180 GGGLGHTMKAITSKYPHIKGINFDLPHVIEHAPAYPGVEHVGGDMFESVPKGDAIFLKWI 239

Query: 238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMI-QSPG 296
           LH+W+D+HCLKLLKNCYK+IP DGKVI +E +LP    TS  +K+ S  DVLMMI Q+PG
Sbjct: 240 LHNWSDDHCLKLLKNCYKAIPGDGKVIVMESVLPITAKTSPAAKAISQLDVLMMITQNPG 299

Query: 297 GKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
           GKERT  EFM LAT AGF GI  E  + N WVMEF+K
Sbjct: 300 GKERTEDEFMALATAAGFRGIKFETFVCNFWVMEFFK 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|268528131|gb|ACZ06242.1| caffeic acid O-methyltransferase 3 [Gossypium hirsutum]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/356 (53%), Positives = 247/356 (69%), Gaps = 23/356 (6%)

Query: 1   MDSIVDGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLT 60
           M + +D   ++SF+YA Q+    VLPM+M A  +L IF I+ K GP AKLSA +IAAQL 
Sbjct: 1   MATQIDCNNEESFSYALQIVTSSVLPMSMHAAVQLDIFGIMAKCGPDAKLSAKEIAAQLA 60

Query: 61  TKNKDAPMMLDRILRLLASYSVVECSL---DASGARRLYSLNSVSKYYVPNKDGVSLGPG 117
           T N +A  MLDRIL LLAS+ +V CS+   +    R+LYSL  VSK++V N+DGVSLGP 
Sbjct: 61  TNNSEAASMLDRILLLLASHGIVGCSVVDEEKGNPRKLYSLTPVSKFFVRNEDGVSLGPL 120

Query: 118 IQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLV 177
           + +  DKVF++ WSQLK AI+EGG+PF+R HG +TFEY G DP FN+ FNT M N+TSLV
Sbjct: 121 MALLQDKVFIDSWSQLKDAIIEGGVPFDRVHGSNTFEYPGKDPRFNQIFNTAMINHTSLV 180

Query: 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM-- 235
           +  IL +YKGF  +  LVDVGGG+G+TL  IT+KYP IKGINFDLPHVI+H P +P +  
Sbjct: 181 LKEILHNYKGFQQLSSLVDVGGGLGITLNLITSKYPSIKGINFDLPHVIQHAPAYPGVQH 240

Query: 236 ------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTS 277
                             WILHDW+ +HCLKLLKNCY +IP+DGKVI VE ++P+VP  +
Sbjct: 241 VGRDMFESVPKGAAIFMKWILHDWSGDHCLKLLKNCYNAIPKDGKVIVVEAVVPDVPEAN 300

Query: 278 IESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
              +S +  D++M+ Q PGGKERT+ EF  LAT AGFSGI  E    + W+MEF+K
Sbjct: 301 AYLRSITQVDMVMLAQDPGGKERTKSEFEALATKAGFSGIRYECFACSYWIMEFFK 356

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520217|ref|XP_003528760.1| PREDICTED: anthranilate N-methyltransferase-like [Glycine max]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/353 (52%), Positives = 240/353 (67%), Gaps = 27/353 (7%)

Query: 8   ERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAP 67
           E      +A  +   +V P  ++   ELGIF+II KAG GAKLSA +I  QL TKN +AP
Sbjct: 20  EEQDGILFAMNMMSTMVYPFVVRTAIELGIFDIIAKAGEGAKLSAEEIIEQLGTKNPEAP 79

Query: 68  MMLDRILRLLASYSVVECSLDA-------SGARRLYSLNSVSKYYVPNKDGVSLGPGIQI 120
            MLDR+LRLLAS+S++  SLD        +  +RLYSL   SKY+V + DGVS G  + +
Sbjct: 80  TMLDRLLRLLASHSMLSSSLDTEDLQHGQNSPKRLYSLTYASKYFVTDADGVSFGATLNL 139

Query: 121 THDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSN 180
             DKVFLE W++LK AILEGG+ FNR H MH+FEY  +DP FN  FN  M+N T++VM  
Sbjct: 140 LLDKVFLESWTELKGAILEGGVAFNRVHSMHSFEYPAVDPRFNDVFNKAMFNLTTIVMKR 199

Query: 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM----- 235
           +LE Y+GF NI +LVDVGGG+G+ L  IT+KYP+++G+NFDLPHVIEH P +P +     
Sbjct: 200 VLEFYEGFKNINRLVDVGGGLGINLNLITSKYPHVQGVNFDLPHVIEHAPTYPGIEHVGG 259

Query: 236 ---------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIES 280
                          WILHDW+DE CLKLLKNC+K+IP DGKVI V+L+LP +P +++ +
Sbjct: 260 DMFESVPNGDAIFMKWILHDWSDEQCLKLLKNCHKAIPSDGKVIVVDLILPILPESTVTA 319

Query: 281 KSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
           KS   +D+LMM Q+ GGKERT+HEFM LA  +GFSGI    ++   WVMEFYK
Sbjct: 320 KSGFQADLLMMTQNSGGKERTQHEFMELALSSGFSGIKIVCSVSGFWVMEFYK 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
TAIR|locus:2153423	363	OMT1 "AT5G54160" [Arabidopsis	0.666	0.611	0.541	9.1e-88
UNIPROTKB|Q84N28	360	OMT1 "Flavone O-methyltransfer	0.669	0.619	0.473	1.6e-75
UNIPROTKB|Q6ZD89	368	ROMT-9 "Flavone 3'-O-methyltra	0.672	0.608	0.444	4.1e-75
TAIR|locus:2199607	373	IGMT1 "indole glucosinolate O-	0.681	0.608	0.420	8.7e-67
TAIR|locus:2199597	373	IGMT3 "indole glucosinolate O-	0.681	0.608	0.415	2.9e-66
TAIR|locus:2199582	373	IGMT4 "indole glucosinolate O-	0.681	0.608	0.407	3.7e-66
TAIR|locus:2199587	373	IGMT2 "indole glucosinolate O-	0.681	0.608	0.415	2e-65
UNIPROTKB|P93324	372	P93324 "Isoliquiritigenin 2'-O	0.666	0.596	0.419	8.8e-63
TAIR|locus:2015223	381	AT1G63140 [Arabidopsis thalian	0.645	0.564	0.4	6.1e-62
TAIR|locus:2030081	367	IGMT5 "indole glucosinolate O-	0.663	0.602	0.404	1.6e-61

TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 9.1e-88, Sum P(2) = 9.1e-88
 Identities = 123/227 (54%), Positives = 158/227 (69%)

Query:    10 DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMM 69
             D++  +A QLA   VLPMA+++  EL + EI+ K G  + +S ++IA++L TKN +AP+M
Sbjct:    17 DEAALFAMQLASASVLPMALKSALELDLLEIMAKNG--SPMSPTEIASKLPTKNPEAPVM 74

Query:    70 LDRILRLLASYSVVECS---LDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVF 126
             LDRILRLL SYSV+ CS   L   G  R+Y L  V KY   N+DGVS+     +  DKV 
Sbjct:    75 LDRILRLLTSYSVLTCSNRKLSGDGVERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVL 134

Query:   127 LECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYK 186
             +E W  LK AIL+GGIPFN+A+GM  FEY G DP FNK FN  M N++++ M  ILE+YK
Sbjct:   135 MESWYHLKDAILDGGIPFNKAYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYK 194

Query:   187 GFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHP 233
             GF+ +  LVDVGGGIG TL+ I +KYP +KGINFDLPHVIE  P HP
Sbjct:   195 GFEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDAPSHP 241

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0030755 "quercetin 3-O-methyltransferase activity" evidence=IDA

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

GO:0047763 "caffeate O-methyltransferase activity" evidence=ISS;IMP

GO:0051555 "flavonol biosynthetic process" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)]

 Score = 532 (192.3 bits), Expect = 1.6e-75, Sum P(2) = 1.6e-75
 Identities = 108/228 (47%), Positives = 148/228 (64%)

Query:    10 DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL-TTKNKDAPM 68
             +++  YA QL    +LPM ++   ELG+ E +  AG G  L+ +++AA+L +T N  A  
Sbjct:    14 EEACMYALQLVSSSILPMTLKNAIELGLLETLVAAG-GKLLTPAEVAAKLPSTANPAAAD 72

Query:    69 MLDRILRLLASYSVVECSLDASGARRL---YSLNSVSKYYVPNKDGVSLGPGIQITHDKV 125
             M+DR+LRLLASY+VV C+++     RL   Y    V K+  PN+DGVS+     +  DKV
Sbjct:    73 MVDRMLRLLASYNVVSCTMEEGKDGRLSRRYRAAPVCKFLTPNEDGVSMAALALMNQDKV 132

Query:   126 FLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESY 185
              +E W  LK A+L+GGIPFN+A+GM  FEY G DP FN+ FN  M N++ ++   +LE Y
Sbjct:   133 LMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLEVY 192

Query:   186 KGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHP 233
             KGF+ +  +VDVGGG+G T+ AIT  YP IKGINFDLPHVI    P P
Sbjct:   193 KGFEGLGTIVDVGGGVGATVGAITAAYPAIKGINFDLPHVISEAQPFP 240

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 507 (183.5 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
 Identities = 104/234 (44%), Positives = 150/234 (64%)

Query:    10 DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKA---GPGAK---LSASDIAAQLTTK- 62
             +++  YA QLA   +LPM ++   ELG+ E +  A   G G K   L+ +++A +L +K 
Sbjct:    14 EEACMYALQLASSSILPMTLKNAIELGLLETLQSAAVAGGGGKAALLTPAEVADKLPSKA 73

Query:    63 NKDAPMMLDRILRLLASYSVVECSLD--ASGA-RRLYSLNSVSKYYVPNKDGVSLGPGIQ 119
             N  A  M+DR+LRLLASY+VV C ++  A G   R Y+   V K+  PN+DGVS+     
Sbjct:    74 NPAAADMVDRMLRLLASYNVVRCEMEEGADGKLSRRYAAAPVCKWLTPNEDGVSMAALAL 133

Query:   120 ITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMS 179
             +  DKV +E W  LK A+L+GGIPFN+A+GM  FEY G D  FN+ FN  M N++ ++  
Sbjct:   134 MNQDKVLMESWYYLKDAVLDGGIPFNKAYGMTAFEYHGTDARFNRVFNEGMKNHSVIITK 193

Query:   180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHP 233
              +L+ Y GFD    +VDVGGG+G T+ A+ +++P+I+GIN+DLPHVI   PP P
Sbjct:   194 KLLDLYTGFDAASTVVDVGGGVGATVAAVVSRHPHIRGINYDLPHVISEAPPFP 247

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2199607 IGMT1 "indole glucosinolate O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
 Identities = 100/238 (42%), Positives = 142/238 (59%)

Query:     4 IVDGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAK--LSASDIAAQLTT 61
             +VD + +     A +LA     PM ++A  ELG+F+ +  A       LS  +IA++L T
Sbjct:    18 VVDDDNELGLM-AVRLANAAAFPMVLKAALELGVFDTLYAAASRTDSFLSPYEIASKLPT 76

Query:    62 --KNKDAPMMLDRILRLLASYSVVECSLDASG-ARRLYSLNSVSKYYVPN--KDGVSLGP 116
               +N +AP++LDR+LRLLASYS+V+C    SG   R+Y    + ++++ +  +D  SL  
Sbjct:    77 TPRNPEAPVLLDRMLRLLASYSMVKCGKALSGKGERVYRAEPICRFFLKDNIQDIGSLAS 136

Query:   117 GIQITHDKVFLECWSQLKHAILEGGIPFNRAHG-MHTFEYAGLDPGFNKHFNTVMYNYTS 175
              + +  D VFL  W+QLK  +LEGG  F RAHG M  F+Y G D  F+K FN     +T 
Sbjct:   137 QVIVNFDSVFLNTWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQT--GFTI 194

Query:   176 LVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHP 233
              V+   LE Y+GF  +K LVDVGGG+G TL  +T+KYP IKGINFDL   +   P +P
Sbjct:   195 AVVKKALEVYEGFKGVKVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPSYP 252

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA;IDA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042343 "indole glucosinolate metabolic process" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2199597 IGMT3 "indole glucosinolate O-methyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 2.9e-66, Sum P(2) = 2.9e-66
 Identities = 99/238 (41%), Positives = 144/238 (60%)

Query:     4 IVDGERDQSFAYANQLARGIVLPMAMQAVYELGIFEII--DKAGPGAKLSASDIAAQLTT 61
             +VD + +     A +LA     PM ++A  ELG+F+ +  + +   + LS S+IA++L T
Sbjct:    18 VVDDDNELGLM-AVRLANAAAFPMVLKASLELGVFDTLYAEASRTDSFLSPSEIASKLPT 76

Query:    62 --KNKDAPMMLDRILRLLASYSVVECSLDASGA-RRLYSLNSVSKYYVPN--KDGVSLGP 116
               +N  AP++LDR+LRLLASYS+V+C   + G  +R+Y    + ++++ N  +D  SL  
Sbjct:    77 TPRNPGAPVLLDRMLRLLASYSMVKCEKVSVGKEQRVYRAEPICRFFLKNNIQDIGSLAS 136

Query:   117 GIQITHDKVFLECWSQLKHAILEGGIPFNRAHG-MHTFEYAGLDPGFNKHFNTVMYNYTS 175
              + +  D VFL  W+QLK  +LEGG  F RAHG M  F+Y G D  F+K FN     +T 
Sbjct:   137 QVIVNFDSVFLNTWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQT--GFTI 194

Query:   176 LVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHP 233
              V+   LE Y+GF  +  LVDVGGG+G TL  +T+KYP IKGINFDL   +   P +P
Sbjct:   195 AVVKKALEVYQGFKGVNVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPTYP 252

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2199582 IGMT4 "indole glucosinolate O-methyltransferase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 3.7e-66, Sum P(2) = 3.7e-66
 Identities = 97/238 (40%), Positives = 143/238 (60%)

Query:     4 IVDGERDQSFAYANQLARGIVLPMAMQAVYELGIFEII--DKAGPGAKLSASDIAAQLTT 61
             ++D + +     A +LA     PM ++A  ELG+F+ +  + +   + LS S+IA++L T
Sbjct:    18 VIDDDNELGLM-AVRLANAAAFPMVLKAALELGVFDTLYAEASRSDSFLSPSEIASKLPT 76

Query:    62 --KNKDAPMMLDRILRLLASYSVVECSLDASG-ARRLYSLNSVSKYYVPN--KDGVSLGP 116
               +N +AP++LDR+LRLLASYSVV+C   + G   R+Y    + ++++ +  +D  SL  
Sbjct:    77 TPRNPEAPVLLDRMLRLLASYSVVKCGKVSEGKGERVYRAEPICRFFLKDNIQDIGSLAS 136

Query:   117 GIQITHDKVFLECWSQLKHAILEGGIPFNRAHG-MHTFEYAGLDPGFNKHFNTVMYNYTS 175
              + +  D VFL  W+QLK  +LEGG  F RAHG M  F+Y G D  F+K FN     +T 
Sbjct:   137 QVIVNFDSVFLNTWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQT--GFTI 194

Query:   176 LVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHP 233
              V+   LE Y+GF  +  LVDVGGG+G TL  + +KYP IKGINFDL   +   P +P
Sbjct:   195 AVVKKALEVYQGFKGVNVLVDVGGGVGNTLGVVASKYPNIKGINFDLTCALAQAPSYP 252

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2199587 IGMT2 "indole glucosinolate O-methyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 2.0e-65, Sum P(2) = 2.0e-65
 Identities = 99/238 (41%), Positives = 143/238 (60%)

Query:     4 IVDGERDQSFAYANQLARGIVLPMAMQAVYELGIFEII--DKAGPGAKLSASDIAAQLTT 61
             +VD + +     A +LA     PM ++A  ELG+F+ +  + +   + LS S+IA++L T
Sbjct:    18 VVDDDNELGLM-AVRLANAAAFPMVLKASLELGVFDTLYAEASRTDSFLSPSEIASKLPT 76

Query:    62 --KNKDAPMMLDRILRLLASYSVVECSLDASG-ARRLYSLNSVSKYYVPN--KDGVSLGP 116
               +N  AP++LDR+LRLLASYS+V+C   + G   R+Y    + ++++ N  +D  SL  
Sbjct:    77 TPRNPGAPVLLDRMLRLLASYSMVKCEKVSVGKGERVYRAEPICRFFLKNNIQDIGSLAS 136

Query:   117 GIQITHDKVFLECWSQLKHAILEGGIPFNRAHG-MHTFEYAGLDPGFNKHFNTVMYNYTS 175
              + +  D VFL  W+QLK  +LEGG  F RAHG M  F+Y G D  F+K FN     +T 
Sbjct:   137 QVIVNFDSVFLNTWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQT--GFTI 194

Query:   176 LVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHP 233
              V+   LE Y+GF  +  LVDVGGG+G TL  +T+KYP IKGINFDL   +   P +P
Sbjct:   195 AVVKKALEVYQGFKGVNVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPSYP 252

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA;IDA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042343 "indole glucosinolate metabolic process" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|P93324 P93324 "Isoliquiritigenin 2'-O-methyltransferase" [Medicago sativa (taxid:3879)]

 Score = 418 (152.2 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
 Identities = 96/229 (41%), Positives = 132/229 (57%)

Query:    10 DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGP-GAKLSASDIAAQL--TTKNKDA 66
             D +   A  L   +V P  + A  +L +FEII KA P GA +S S+IA++L  +T++ D 
Sbjct:    22 DSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDL 81

Query:    67 PMMLDRILRLLASYSVVECS---LDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHD 123
             P  LDR+LRLLASYSV+  +   ++  GA R+Y L+ V KY VP++    L         
Sbjct:    82 PNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCY 141

Query:   124 KVFLECWSQLKHAILEGGIP-FNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNIL 182
                L+ W   K A+++  I  F   HG+  +E+ G D   N+ FN  M +  +  M  +L
Sbjct:   142 PALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRML 201

Query:   183 ESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPP 231
             E Y GF+ I  LVDVGGG G  L+ I +KYP IKGINFDLP VIE+ PP
Sbjct:   202 EIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP 250

GO:0030751 "licodione 2'-O-methyltransferase activity" evidence=IDA

GO:0033802 "isoliquiritigenin 2'-O-methyltransferase activity" evidence=IDA

TAIR|locus:2015223 AT1G63140 [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
 Identities = 90/225 (40%), Positives = 132/225 (58%)

Query:    16 ANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTK--NKDAPMMLDRI 73
             A ++   +  PM ++   ELG+ ++I     G  LS S+IA  L TK  N +AP++LDR+
Sbjct:    33 AERILHAMTFPMVLKTALELGVIDMITSVDDGVWLSPSEIALGLPTKPTNPEAPVLLDRM 92

Query:    74 LRLLASYSVVECSL----DASGAR---RLYSLNSVSKYYVPNKDGV-SLGPGIQITHDKV 125
             L LLAS+S+++       D  G+R   R+Y+   V  +++   DG+ SL     +   +V
Sbjct:    93 LVLLASHSILKYRTVETGDNIGSRKTERVYAAEPVCTFFLNRGDGLGSLATLFMVLQGEV 152

Query:   126 FLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESY 185
              ++ W  LK  ILEG   F  AHGM  FE  G +  F + FN  M   ++L+M  +LE Y
Sbjct:   153 CMKPWEHLKDMILEGKDAFTSAHGMRFFELIGSNEQFAEMFNRAMSEASTLIMKKVLEVY 212

Query:   186 KGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVP 230
             KGF+++  LVDVGGGIG  +  +T+KYP+IKGINFDL  V+ H P
Sbjct:   213 KGFEDVNTLVDVGGGIGTIIGQVTSKYPHIKGINFDLASVLAHAP 257

GO:0005737 "cytoplasm" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2030081 IGMT5 "indole glucosinolate O-methyltransferase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
 Identities = 98/242 (40%), Positives = 140/242 (57%)

Query:     6 DGERDQSFAYANQLARGIVLPMAMQAVYELGIFEII------DKAGPGAKLSASDIAAQL 59
             D E +   A A +LA     PM  +A  ELG+ + +      D  G  + L+ S+IA +L
Sbjct:    10 DEETELGLA-AVRLANCAAFPMVFKAAIELGVIDTLYLAARDDVTGSSSFLTPSEIAIRL 68

Query:    60 TTK--NKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGV----- 112
              TK  N +AP +LDRILRLLASYS+V+C +   G  R+Y    + +Y++  KD V     
Sbjct:    69 PTKPSNPEAPALLDRILRLLASYSMVKCQI-IDG-NRVYKAEPICRYFL--KDNVDEELG 124

Query:   113 SLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHG-MHTFEYAGLDPGFNKHFNTVMY 171
             +L   + +T D VFL  W +LK+ +LEGG+ F RA+G +  F+Y   D   +K FN    
Sbjct:   125 TLASQLIVTLDTVFLNTWGELKNVVLEGGVAFGRANGGLKLFDYISKDERLSKLFNRT-- 182

Query:   172 NYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPP 231
              ++  V+  IL+ Y GF+ +  LVDVGGG+G TL  +T+KYP IKGINFDL   +   P 
Sbjct:   183 GFSVAVLKKILQVYSGFEGVNVLVDVGGGVGDTLGFVTSKYPNIKGINFDLTCALTQAPS 242

Query:   232 HP 233
             +P
Sbjct:   243 YP 244

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q43609	COMT1_PRUDU	2, ., 1, ., 1, ., 6, 8	0.5072	0.9729	0.8876	N/A	no
Q00763	COMT1_POPTM	2, ., 1, ., 1, ., 6, 8	0.5100	0.9729	0.8876	N/A	no
Q6ZD89	OMT1_ORYSJ	2, ., 1, ., 1, ., 7, 6	0.4228	0.9579	0.8668	yes	no
Q43046	COMT1_POPKI	2, ., 1, ., 1, ., 6, 8	0.5129	0.9729	0.8876	N/A	no
Q43047	COMT3_POPKI	2, ., 1, ., 1, ., 6, 8	0.5187	0.9729	0.8901	N/A	no
Q9FK25	OMT1_ARATH	2, ., 1, ., 1, ., 7, 6	0.5135	0.9189	0.8429	yes	no
Q41086	COMT2_POPTM	2, ., 1, ., 1, ., 6, 8	0.5100	0.9729	0.8901	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: COMT4 SubName- Full=Putative uncharacterized protein; (358 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	333
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	2e-85
pfam08100	50	pfam08100, Dimerisation, Dimerisation domain	5e-15
TIGR02716	306	TIGR02716, C20_methyl_CrtF, C-20 methyltransferase	9e-05

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score =  257 bits (658), Expect = 2e-85
 Identities = 101/238 (42%), Positives = 132/238 (55%), Gaps = 22/238 (9%)

Query: 93  RRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHT 152
              Y L   SK  V  +D  SL P + +  D   LE W+ LK A+ EGG PF RA GM  
Sbjct: 4   GEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGGPPFERAFGMPF 63

Query: 153 FEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKY 212
           FEY G DP FN+ FN  M  ++ LVM  ILE+   F  +  LVDVGGG G    AI   Y
Sbjct: 64  FEYLGADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAAIVRAY 123

Query: 213 PYIKGINFDLPHVIEHVPPHPCM--------------------WILHDWNDEHCLKLLKN 252
           P+IKGI FDLPHVI   P    +                    W+LHDW+DE C+K+LK 
Sbjct: 124 PHIKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCVKILKR 183

Query: 253 CYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLAT 310
           CY+++P  GKVI VE++LPE P+  +E++     D+ M++ +  GKERT  E+  L +
Sbjct: 184 CYEALPPGGKVIVVEMVLPEDPDDDLETEVLL-LDLNMLVLNG-GKERTEKEWRKLLS 239

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

>gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain

 Score = 68.0 bits (167), Expect = 5e-15
 Identities = 27/52 (51%), Positives = 37/52 (71%), Gaps = 2/52 (3%)

Query: 27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLA 78
          M ++   ELGI +II K G    LS S++A++L T N +AP+MLDR+LRLLA
Sbjct: 1  MVLKCAIELGIPDIIAKHG--KPLSPSELASKLPTVNPEAPVMLDRLLRLLA 50

This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50

>gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU

 Score = 43.5 bits (102), Expect = 9e-05
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 30/116 (25%)

Query: 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHV-------------------- 229
            +K+++DVGGGIG    A+   +P +     +LP  I+ V                    
Sbjct: 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDI 208

Query: 230 -----PPHPCMW---ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML--PEVPN 275
                P    +    IL+  N++    + K  + ++   G+++ +++++  PE PN
Sbjct: 209 YKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPN 264

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	333
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	100.0
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	100.0
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	100.0
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.6
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.56
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.52
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.52
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.51
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.48
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.48
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.47
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.47
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.46
PLN02490	340	MPBQ/MSBQ methyltransferase	99.39
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.38
PLN02244	340	tocopherol O-methyltransferase	99.37
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.37
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.35
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.34
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.33
PLN02336	475	phosphoethanolamine N-methyltransferase	99.33
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.32
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.31
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.3
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.28
PRK04266	226	fibrillarin; Provisional	99.27
PRK06922	677	hypothetical protein; Provisional	99.26
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.25
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.25
PRK11207	197	tellurite resistance protein TehB; Provisional	99.24
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.24
PRK08317	241	hypothetical protein; Provisional	99.24
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.22
TIGR03438	301	probable methyltransferase. This model represents	99.21
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.2
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.16
PRK06202	232	hypothetical protein; Provisional	99.16
KOG2361	264	consensus Predicted methyltransferase [General fun	99.15
PRK05785	226	hypothetical protein; Provisional	99.15
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.14
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.14
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.08
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.05
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.05
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.04
PRK12335	287	tellurite resistance protein TehB; Provisional	99.03
PLN02336	475	phosphoethanolamine N-methyltransferase	99.03
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.03
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.02
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.02
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.97
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.96
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.94
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.94
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.93
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.92
PF08100	51	Dimerisation: Dimerisation domain; InterPro: IPR01	98.9
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.89
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.89
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.89
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.88
KOG4300	252	consensus Predicted methyltransferase [General fun	98.88
PTZ00146	293	fibrillarin; Provisional	98.87
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.85
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.84
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.84
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.8
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.77
PLN03075	296	nicotianamine synthase; Provisional	98.77
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.76
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.75
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.73
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.73
PRK07402	196	precorrin-6B methylase; Provisional	98.73
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.72
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.69
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.69
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.66
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.65
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.64
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.64
PRK14968	188	putative methyltransferase; Provisional	98.63
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.62
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.61
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.61
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.61
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.56
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.56
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.54
KOG2899	288	consensus Predicted methyltransferase [General fun	98.53
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.52
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.52
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.5
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.5
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.47
PRK04457	262	spermidine synthase; Provisional	98.46
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.46
KOG1271	227	consensus Methyltransferases [General function pre	98.44
COG4123	248	Predicted O-methyltransferase [General function pr	98.42
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.42
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.4
KOG3010	261	consensus Methyltransferase [General function pred	98.37
PRK01581	374	speE spermidine synthase; Validated	98.37
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.36
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.33
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.31
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.31
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.28
PRK14967	223	putative methyltransferase; Provisional	98.28
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.27
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.27
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.25
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.23
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.23
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.23
PRK00811	283	spermidine synthase; Provisional	98.22
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.22
TIGR00438	188	rrmJ cell division protein FtsJ.	98.19
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.18
PRK03612	521	spermidine synthase; Provisional	98.17
PHA03411	279	putative methyltransferase; Provisional	98.15
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.14
PLN02366	308	spermidine synthase	98.13
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.1
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.09
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.09
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.02
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.98
COG2890	280	HemK Methylase of polypeptide chain release factor	97.96
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.95
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.92
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	97.91
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.89
PRK10901	427	16S rRNA methyltransferase B; Provisional	97.88
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	97.86
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.85
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	97.84
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.82
PLN02476	278	O-methyltransferase	97.81
PLN02672	1082	methionine S-methyltransferase	97.78
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.75
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.74
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.72
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.71
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.69
PRK14902	444	16S rRNA methyltransferase B; Provisional	97.69
PRK00536	262	speE spermidine synthase; Provisional	97.68
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.66
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.66
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.65
PLN02823	336	spermine synthase	97.65
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.65
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	97.64
COG4122	219	Predicted O-methyltransferase [General function pr	97.64
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	97.64
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.6
PRK14904	445	16S rRNA methyltransferase B; Provisional	97.56
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.54
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	97.54
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.52
PRK14903	431	16S rRNA methyltransferase B; Provisional	97.46
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.42
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.42
PRK14901	434	16S rRNA methyltransferase B; Provisional	97.39
PF09339	52	HTH_IclR: IclR helix-turn-helix domain; InterPro:	97.33
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.33
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	97.3
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.22
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	97.17
KOG3115	249	consensus Methyltransferase-like protein [General	97.16
PLN02589	247	caffeoyl-CoA O-methyltransferase	97.11
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.1
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.09
smart00550	68	Zalpha Z-DNA-binding domain in adenosine deaminase	97.05
PRK04148	134	hypothetical protein; Provisional	97.05
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.02
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	96.99
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	96.94
KOG1331	293	consensus Predicted methyltransferase [General fun	96.93
COG2521	287	Predicted archaeal methyltransferase [General func	96.91
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	96.88
smart00346	91	HTH_ICLR helix_turn_helix isocitrate lyase regulat	96.88
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	96.86
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	96.85
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	96.83
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	96.83
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	96.8
PF01022	47	HTH_5: Bacterial regulatory protein, arsR family;	96.73
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	96.72
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.69
KOG2940	325	consensus Predicted methyltransferase [General fun	96.65
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	96.64
PF12840	61	HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_	96.62
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	96.61
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	96.6
COG4798	238	Predicted methyltransferase [General function pred	96.55
PF02082	83	Rrf2: Transcriptional regulator; InterPro: IPR0009	96.55
PHA03412	241	putative methyltransferase; Provisional	96.55
COG1414	246	IclR Transcriptional regulator [Transcription]	96.51
KOG2904	328	consensus Predicted methyltransferase [General fun	96.47
KOG2918	335	consensus Carboxymethyl transferase [Posttranslati	96.37
PF13412	48	HTH_24: Winged helix-turn-helix DNA-binding; PDB:	96.35
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	96.28
PF13679	141	Methyltransf_32: Methyltransferase domain	96.28
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	96.26
PRK11569	274	transcriptional repressor IclR; Provisional	96.13
TIGR02431	248	pcaR_pcaU beta-ketoadipate pathway transcriptional	96.13
PF01978	68	TrmB: Sugar-specific transcriptional regulator Trm	96.12
PRK10163	271	DNA-binding transcriptional repressor AllR; Provis	96.12
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	96.08
PRK09834	263	DNA-binding transcriptional activator MhpR; Provis	96.02
PRK15090	257	DNA-binding transcriptional regulator KdgR; Provis	96.02
PRK10141	117	DNA-binding transcriptional repressor ArsR; Provis	96.01
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	95.94
PF04703	62	FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.	95.93
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	95.89
COG4262	508	Predicted spermidine synthase with an N-terminal m	95.85
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	95.82
smart00419	48	HTH_CRP helix_turn_helix, cAMP Regulatory protein.	95.78
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	95.77
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	95.77
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	95.75
PHA00738	108	putative HTH transcription regulator	95.7
cd00092	67	HTH_CRP helix_turn_helix, cAMP Regulatory protein	95.69
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	95.63
PF14947	77	HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_	95.63
COG1959	150	Predicted transcriptional regulator [Transcription	95.53
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	95.5
PRK10857	164	DNA-binding transcriptional regulator IscR; Provis	95.47
COG4301	321	Uncharacterized conserved protein [Function unknow	95.37
PF13463	68	HTH_27: Winged helix DNA-binding domain; PDB: 3GFL	95.36
PF09012	69	FeoC: FeoC like transcriptional regulator; InterPr	95.33
PF13601	80	HTH_34: Winged helix DNA-binding domain; PDB: 1UB9	95.28
PF04967	53	HTH_10: HTH DNA binding domain; InterPro: IPR00705	95.24
COG3355	126	Predicted transcriptional regulator [Transcription	95.2
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	95.17
TIGR02010	135	IscR iron-sulfur cluster assembly transcription fa	95.09
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	95.08
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	95.07
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	94.98
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	94.96
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	94.95
PF12802	62	MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP	94.92
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	94.89
TIGR02337	118	HpaR homoprotocatechuate degradation operon regula	94.86
TIGR00738	132	rrf2_super rrf2 family protein (putative transcrip	94.84
TIGR02702	203	SufR_cyano iron-sulfur cluster biosynthesis transc	94.8
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	94.73
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	94.68
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	94.63
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	94.62
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	94.56
smart00347	101	HTH_MARR helix_turn_helix multiple antibiotic resi	94.55
PRK03902	142	manganese transport transcriptional regulator; Pro	94.44
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	94.44
PF08220	57	HTH_DeoR: DeoR-like helix-turn-helix domain; Inter	94.37
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	94.31
PF07381	90	DUF1495: Winged helix DNA-binding domain (DUF1495)	94.31
COG3315	297	O-Methyltransferase involved in polyketide biosynt	94.22
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	94.21
PF01047	59	MarR: MarR family; InterPro: IPR000835 The MarR-ty	94.2
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	94.19
smart00420	53	HTH_DEOR helix_turn_helix, Deoxyribose operon repr	94.18
PRK11050	152	manganese transport regulator MntR; Provisional	94.17
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	94.12
PRK11512	144	DNA-binding transcriptional repressor MarR; Provis	94.07
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	94.03
PRK11014	141	transcriptional repressor NsrR; Provisional	94.03
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	93.78
PF08461	66	HTH_12: Ribonuclease R winged-helix domain; InterP	93.72
COG4742	260	Predicted transcriptional regulator [Transcription	93.68
TIGR00122	69	birA_repr_reg BirA biotin operon repressor domain.	93.61
PRK06266	178	transcription initiation factor E subunit alpha; V	93.58
COG2345	218	Predicted transcriptional regulator [Transcription	93.54
PRK11920	153	rirA iron-responsive transcriptional regulator; Re	93.43
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	93.43
PF01726	65	LexA_DNA_bind: LexA DNA binding domain; InterPro:	93.42
COG2384	226	Predicted SAM-dependent methyltransferase [General	93.24
TIGR02944	130	suf_reg_Xantho FeS assembly SUF system regulator,	93.23
smart00418	66	HTH_ARSR helix_turn_helix, Arsenical Resistance Op	93.21
TIGR01884	203	cas_HTH CRISPR locus-related DNA-binding protein.	93.15
PRK06474	178	hypothetical protein; Provisional	93.13
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	93.08
COG1321	154	TroR Mn-dependent transcriptional regulator [Trans	93.06
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	93.02
PF01638	90	HxlR: HxlR-like helix-turn-helix; InterPro: IPR002	92.88
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	92.86
smart00344	108	HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto	92.81
PRK15431	78	ferrous iron transport protein FeoC; Provisional	92.66
smart00345	60	HTH_GNTR helix_turn_helix gluconate operon transcr	92.64
cd00090	78	HTH_ARSR Arsenical Resistance Operon Repressor and	92.59
COG4189	308	Predicted transcriptional regulator [Transcription	92.58
PF01325	60	Fe_dep_repress: Iron dependent repressor, N-termin	92.31
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	92.21
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	92.17
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	92.04
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	91.89
COG4190	144	Predicted transcriptional regulator [Transcription	91.83
cd07377	66	WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi	91.72
PF08279	55	HTH_11: HTH domain; InterPro: IPR013196 Winged hel	91.59
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	91.53
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	91.42
PRK03573	144	transcriptional regulator SlyA; Provisional	91.04
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	90.81
COG1041	347	Predicted DNA modification methylase [DNA replicat	90.75
cd07153	116	Fur_like Ferric uptake regulator(Fur) and related	90.64
smart00529	96	HTH_DTXR Helix-turn-helix diphteria tox regulatory	90.53
TIGR01610	95	phage_O_Nterm phage replication protein O, N-termi	90.45
PF00325	32	Crp: Bacterial regulatory proteins, crp family; In	90.43
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	90.38
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	90.24
COG1378	247	Predicted transcriptional regulators [Transcriptio	90.1
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	90.05
PF06163	127	DUF977: Bacterial protein of unknown function (DUF	90.04
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	89.77
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	89.41
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	89.39
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	88.89
PRK14165	217	winged helix-turn-helix domain-containing protein/	88.73
PF14394	171	DUF4423: Domain of unknown function (DUF4423)	88.51
PHA02943	165	hypothetical protein; Provisional	88.43
PRK11179	153	DNA-binding transcriptional regulator AsnC; Provis	88.35
PF02002	105	TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024	88.34
TIGR01889	109	Staph_reg_Sar staphylococcal accessory regulator f	88.01
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	87.86
COG2512	258	Predicted membrane-associated trancriptional regul	87.74
PRK11169	164	leucine-responsive transcriptional regulator; Prov	87.7
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	86.99
COG3432	95	Predicted transcriptional regulator [Transcription	86.93
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	86.73
COG3413	215	Predicted DNA binding protein [General function pr	86.62
PHA01634	156	hypothetical protein	86.33
PF01358	294	PARP_regulatory: Poly A polymerase regulatory subu	86.32
PF10007	92	DUF2250: Uncharacterized protein conserved in arch	86.19
PRK04172	489	pheS phenylalanyl-tRNA synthetase subunit alpha; P	86.01
COG1522	154	Lrp Transcriptional regulators [Transcription]	85.9
PRK10870	176	transcriptional repressor MprA; Provisional	85.89
PF04182	75	B-block_TFIIIC: B-block binding subunit of TFIIIC;	85.79
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	85.75
PRK05638	442	threonine synthase; Validated	85.71
PLN02853	492	Probable phenylalanyl-tRNA synthetase alpha chain	85.69
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	85.64
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	85.53
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	85.25
KOG4058	199	consensus Uncharacterized conserved protein [Funct	84.8
PF00392	64	GntR: Bacterial regulatory proteins, gntR family;	84.66
PF13545	76	HTH_Crp_2: Crp-like helix-turn-helix domain; PDB:	84.46
COG1733	120	Predicted transcriptional regulators [Transcriptio	84.4
PF03444	78	HrcA_DNA-bdg: Winged helix-turn-helix transcriptio	84.22
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	84.04
COG4565	224	CitB Response regulator of citrate/malate metaboli	83.9
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	83.85
PRK04214	412	rbn ribonuclease BN/unknown domain fusion protein;	83.56
PHA03108	300	poly(A) polymerase small subunit; Provisional	83.52
PRK13509	251	transcriptional repressor UlaR; Provisional	83.37
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	83.28
PF12793	115	SgrR_N: Sugar transport-related sRNA regulator N-t	83.0
COG1846	126	MarR Transcriptional regulators [Transcription]	82.75
TIGR00498	199	lexA SOS regulatory protein LexA. LexA acts as a h	82.72
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	82.65
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	82.43
PF13404	42	HTH_AsnC-type: AsnC-type helix-turn-helix domain;	82.37
COG1510	177	Predicted transcriptional regulators [Transcriptio	82.31
PF13730	55	HTH_36: Helix-turn-helix domain	82.29
PRK13777	185	transcriptional regulator Hpr; Provisional	81.86
PF08784	102	RPA_C: Replication protein A C terminal; InterPro:	81.79
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	81.72
COG2265	432	TrmA SAM-dependent methyltransferases related to t	81.26
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	81.24
PTZ00326	494	phenylalanyl-tRNA synthetase alpha chain; Provisio	80.88
PF12324	77	HTH_15: Helix-turn-helix domain of alkylmercury ly	80.83
PF13384	50	HTH_23: Homeodomain-like domain; PDB: 2X48_C.	80.07

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=100.00  E-value=9.4e-43  Score=307.86  Aligned_cols=316  Identities=47%  Similarity=0.791  Sum_probs=280.4

Q ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCC-CCCCCcccHHHHHHHHhcccceeeecc
Q 035738           10 DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTT-KNKDAPMMLDRILRLLASYSVVECSLD   88 (333)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~-~~~~~~~~l~~lL~~L~~~g~l~~~~~   88 (333)
                      .+...++++++.++..++++.+|+|||+||.|++++   +  ..|+|..+-. +||..|..++|+||.|++.+++++...
T Consensus         4 ~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~---~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~   78 (342)
T KOG3178|consen    4 NEASLRAMRLANGFALPMVLKAACELGVFDILANAG---S--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLV   78 (342)
T ss_pred             hHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCC---C--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeee
Confidence            345678999999999999999999999999999963   2  8888888884 677899999999999999999999743


Q ss_pred             CCCccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHHHHH
Q 035738           89 ASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNT  168 (333)
Q Consensus        89 ~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~  168 (333)
                      ++  . .|++++.++.++.+.+..+++.++...+....++.|..|.++++.+..+|..++|...++|...++.....|++
T Consensus        79 ~~--~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~  155 (342)
T KOG3178|consen   79 GG--E-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNG  155 (342)
T ss_pred             cc--e-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHH
Confidence            21  2 79999999988866656789999998888889999999999999999899999997789999888888889999


Q ss_pred             HHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-CCe------------
Q 035738          169 VMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH-PCM------------  235 (333)
Q Consensus       169 ~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~gv------------  235 (333)
                      +|...+....+.+++.+.+++.....||||||.|..+..++..||+++++.+|+|.+++.+..+ +||            
T Consensus       156 sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P  235 (342)
T KOG3178|consen  156 SMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTP  235 (342)
T ss_pred             HHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCC
Confidence            9999999988899998888999999999999999999999999999999999999999999887 764            


Q ss_pred             --------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCC-CCccccccccchhhHHHhhCCCCCcCCHHHHH
Q 035738          236 --------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVP-NTSIESKSNSDSDVLMMIQSPGGKERTRHEFM  306 (333)
Q Consensus       236 --------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~-~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~  306 (333)
                              +|||+|+|++|+++|++|+++|+|+|+|++.|.+.++.. ...........+|+.|+.+..+|++|+..||+
T Consensus       236 ~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q  315 (342)
T KOG3178|consen  236 KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQ  315 (342)
T ss_pred             CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHH
Confidence                    999999999999999999999999999999999888632 22222445567889998877789999999999


Q ss_pred             HHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738          307 TLATGAGFSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       307 ~ll~~aGf~~~~~~~~~~~~~vie~~~  333 (333)
                      .++.++||.+..+.-.+..+++||.+|
T Consensus       316 ~l~~~~gF~~~~~~~~~~~~~~Ie~~k  342 (342)
T KOG3178|consen  316 ALLPEEGFPVCMVALTAYSYSVIEFHK  342 (342)
T ss_pred             hcchhhcCceeEEEeccCccchheeCC
Confidence            999999999999999999999999986

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=100.00  E-value=4.1e-36  Score=273.18  Aligned_cols=267  Identities=18%  Similarity=0.276  Sum_probs=194.9

Q ss_pred             HHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccc
Q 035738           25 LPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKY  104 (333)
Q Consensus        25 ~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~  104 (333)
                      ..++|++|++|||||.|++    ||.|++|||+++|+    +++.++|||++|+++|++++.      ++.|++|+.+..
T Consensus         3 ~~~~l~aa~~Lglfd~L~~----gp~t~~eLA~~~~~----~~~~~~~lL~~L~~lgll~~~------~~~y~~t~~~~~   68 (306)
T TIGR02716         3 EFSCMKAAIELDLFSHMAE----GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE------DGKWSLTEFADY   68 (306)
T ss_pred             hHHHHHHHHHcCcHHHHhc----CCCCHHHHHHHcCC----ChHHHHHHHHHHHhCCCeEec------CCcEecchhHHh
Confidence            4679999999999999987    59999999999999    999999999999999999985      689999999997


Q ss_pred             cccCCCCC---ChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHHHHHHHh-hhhhhhHHH
Q 035738          105 YVPNKDGV---SLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMY-NYTSLVMSN  180 (333)
Q Consensus       105 l~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~-~~~~~~~~~  180 (333)
                      ++.+++..   ++.++..+. .......|.+|.+++|+ .++|+..+     ++....++. ..|...|. .......+.
T Consensus        69 ~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~-~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~  140 (306)
T TIGR02716        69 MFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRG-QKNFKGQV-----PYPPVTRED-NLYFEEIHRSNAKFAIQL  140 (306)
T ss_pred             hccCCccchhhhcCchHHHH-HHHHHHHHHhHHHHhcC-Cccccccc-----CCCCCCHHH-HHhHHHHHHhcchhHHHH
Confidence            77665431   122333332 11223568899999984 44443222     222222222 23444444 333344556


Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC---C---------------------Ce-
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH---P---------------------CM-  235 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---~---------------------gv-  235 (333)
                      +++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++++   .                     ++ 
T Consensus       141 l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v  219 (306)
T TIGR02716       141 LLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAV  219 (306)
T ss_pred             HHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEE
Confidence            677666 888899999999999999999999999999999999888776532   0                     01 


Q ss_pred             ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhH----HHhhCCCCCcCCHHHHHHH
Q 035738          236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVL----MMIQSPGGKERTRHEFMTL  308 (333)
Q Consensus       236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~----m~~~~~~g~~rt~~e~~~l  308 (333)
                         ++||+|+++.+.++|++++++|+|||+++|.|.+.++.... ..   ....+..    |+..  -...++.++|.+|
T Consensus       220 ~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~-~~---~~~~~~~~~~~~~~~--~~~~~~~~e~~~l  293 (306)
T TIGR02716       220 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENP-NF---DYLSHYILGAGMPFS--VLGFKEQARYKEI  293 (306)
T ss_pred             EeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc-hh---hHHHHHHHHcccccc--cccCCCHHHHHHH
Confidence               88999999999999999999999999999999987654321 11   1111111    1111  1123458999999


Q ss_pred             HHhCCCCeeEEe
Q 035738          309 ATGAGFSGISCE  320 (333)
Q Consensus       309 l~~aGf~~~~~~  320 (333)
                      |+++||+.++++
T Consensus       294 l~~aGf~~v~~~  305 (306)
T TIGR02716       294 LESLGYKDVTMV  305 (306)
T ss_pred             HHHcCCCeeEec
Confidence            999999988764

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=100.00  E-value=5.4e-36  Score=263.52  Aligned_cols=217  Identities=32%  Similarity=0.590  Sum_probs=184.0

Q ss_pred             ccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHHHHHHHh
Q 035738           92 ARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMY  171 (333)
Q Consensus        92 ~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~  171 (333)
                      ++++|++|+.|+.|+.+++..++..++.+...+.+++.|.+|.+++++|.++|+..+|.++|+|++++|+....|+.+|.
T Consensus         2 ~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~   81 (241)
T PF00891_consen    2 EGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMA   81 (241)
T ss_dssp             STEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred             CCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence            47899999999999988875578888877667889999999999999999999999998899999999999999999999


Q ss_pred             hhhhhhH-HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCCCC----------------
Q 035738          172 NYTSLVM-SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPC----------------  234 (333)
Q Consensus       172 ~~~~~~~-~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~g----------------  234 (333)
                      ..+.... ..+...++ +++..+|||||||+|.++..++++||+++++++|+|.+++.+++...                
T Consensus        82 ~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D  160 (241)
T PF00891_consen   82 EYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVAD  160 (241)
T ss_dssp             HHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSES
T ss_pred             hhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcccc
Confidence            9998877 77777777 99999999999999999999999999999999999999987654211                


Q ss_pred             e----EEEccCChhHHHHHHHHHHHhCCCC--cEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHH
Q 035738          235 M----WILHDWNDEHCLKLLKNCYKSIPED--GKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTL  308 (333)
Q Consensus       235 v----~vLh~~~~~~~~~lL~~~~~~L~pg--G~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~l  308 (333)
                      +    +|||+|+|++|.+||++++++|+||  |+|+|+|.+.++....+........+|+.|++++ +|++||.+||++|
T Consensus       161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~l  239 (241)
T PF00891_consen  161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEAL  239 (241)
T ss_dssp             EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHHH
T ss_pred             ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHHH
Confidence            1    9999999999999999999999999  9999999999987654322112257899999886 7999999999999


Q ss_pred             HH
Q 035738          309 AT  310 (333)
Q Consensus       309 l~  310 (333)
                      |+
T Consensus       240 l~  241 (241)
T PF00891_consen  240 LK  241 (241)
T ss_dssp             HH
T ss_pred             hC
Confidence            85

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.60  E-value=1e-14  Score=125.73  Aligned_cols=135  Identities=16%  Similarity=0.206  Sum_probs=101.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC---e-----------------------EE
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC---M-----------------------WI  237 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g---v-----------------------~v  237 (333)
                      ..++.+|||||||||..+..+++..+..+++++|+ +.|++.+++.   .+   +                       ..
T Consensus        49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg  128 (238)
T COG2226          49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG  128 (238)
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence            44789999999999999999999999999999999 8999988753   11   1                       88


Q ss_pred             EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhH-HHhhC----------------CCCCcC
Q 035738          238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVL-MMIQS----------------PGGKER  300 (333)
Q Consensus       238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~-m~~~~----------------~~g~~r  300 (333)
                      ||+++|.+  +.|++++|+|||||+++++|...++.....   ....++.+. .+...                +.-+..
T Consensus       129 lrnv~d~~--~aL~E~~RVlKpgG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p  203 (238)
T COG2226         129 LRNVTDID--KALKEMYRVLKPGGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFP  203 (238)
T ss_pred             hhcCCCHH--HHHHHHHHhhcCCeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCC
Confidence            89999777  999999999999999999999887653221   111111111 11110                011345


Q ss_pred             CHHHHHHHHHhCCCCeeEEeecCCcee
Q 035738          301 TRHEFMTLATGAGFSGISCERAIGNLW  327 (333)
Q Consensus       301 t~~e~~~ll~~aGf~~~~~~~~~~~~~  327 (333)
                      +.+++.++++++||+.+.......+..
T Consensus       204 ~~~~l~~~~~~~gf~~i~~~~~~~G~~  230 (238)
T COG2226         204 DQEELKQMIEKAGFEEVRYENLTFGIV  230 (238)
T ss_pred             CHHHHHHHHHhcCceEEeeEeeeeeeE
Confidence            899999999999999998776665554

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.56  E-value=7.7e-14  Score=123.87  Aligned_cols=135  Identities=18%  Similarity=0.172  Sum_probs=95.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC---------CCe---------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH---------PCM---------------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~gv---------------------  235 (333)
                      ..+..+|||||||+|.++..+++.+ |+.+++++|+ +.+++.|++.         .++                     
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~  150 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT  150 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence            5567899999999999999998875 6789999999 8898876421         111                     


Q ss_pred             --EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccc-hhhHH--H-hhCC-----------CCC
Q 035738          236 --WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSD-SDVLM--M-IQSP-----------GGK  298 (333)
Q Consensus       236 --~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~-~d~~m--~-~~~~-----------~g~  298 (333)
                        .++|++++..  ++|++++++|+|||++++.|...++.....   ....+ +...+  . ....           -..
T Consensus       151 ~~~~l~~~~d~~--~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~  225 (261)
T PLN02233        151 MGYGLRNVVDRL--KAMQEMYRVLKPGSRVSILDFNKSTQPFTT---SMQEWMIDNVVVPVATGYGLAKEYEYLKSSINE  225 (261)
T ss_pred             EecccccCCCHH--HHHHHHHHHcCcCcEEEEEECCCCCcHHHH---HHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence              6678888665  899999999999999999999765531110   00000 00000  0 0000           023


Q ss_pred             cCCHHHHHHHHHhCCCCeeEEeecCCcee
Q 035738          299 ERTRHEFMTLATGAGFSGISCERAIGNLW  327 (333)
Q Consensus       299 ~rt~~e~~~ll~~aGf~~~~~~~~~~~~~  327 (333)
                      .++.+++.++++++||+.++.....++..
T Consensus       226 f~s~~el~~ll~~aGF~~~~~~~~~~g~~  254 (261)
T PLN02233        226 YLTGEELEKLALEAGFSSAKHYEISGGLM  254 (261)
T ss_pred             cCCHHHHHHHHHHCCCCEEEEEEcCCCee
Confidence            56899999999999999999888775554

>TIGR00740 methyltransferase, putative

Probab=99.52  E-value=1.7e-14  Score=126.75  Aligned_cols=133  Identities=17%  Similarity=0.143  Sum_probs=95.7

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHH--CCCCeEEEeec-hhHhhhCCCC-------CCe---------------------EE
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTK--YPYIKGINFDL-PHVIEHVPPH-------PCM---------------------WI  237 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~-------~gv---------------------~v  237 (333)
                      .+..+|||||||+|..+..+++.  +|+.+++++|+ +.+++.|++.       ..+                     .+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~  131 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT  131 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence            45679999999999999999987  47899999999 8898877542       011                     66


Q ss_pred             EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHH-----------------hhCCCCCcC
Q 035738          238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMM-----------------IQSPGGKER  300 (333)
Q Consensus       238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~-----------------~~~~~g~~r  300 (333)
                      +|++++++...+|++++++|+|||.+++.|.+.+++....  .   ....+.+.                 .....-...
T Consensus       132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~--~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  206 (239)
T TIGR00740       132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKIN--H---LLIDLHHQFKRANGYSELEISQKRTALENVMRTD  206 (239)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHH--H---HHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence            7888887788999999999999999999998776542211  0   01111100                 000012356


Q ss_pred             CHHHHHHHHHhCCCCeeEEeecCCce
Q 035738          301 TRHEFMTLATGAGFSGISCERAIGNL  326 (333)
Q Consensus       301 t~~e~~~ll~~aGf~~~~~~~~~~~~  326 (333)
                      |.+++.+++++|||+.+++......+
T Consensus       207 s~~~~~~~l~~aGF~~~~~~~~~~~~  232 (239)
T TIGR00740       207 SIETHKARLKNVGFSHVELWFQCFNF  232 (239)
T ss_pred             CHHHHHHHHHHcCCchHHHHHHHHhH
Confidence            89999999999999987765443333

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.52  E-value=1.2e-13  Score=117.08  Aligned_cols=149  Identities=17%  Similarity=0.220  Sum_probs=106.0

Q ss_pred             HHHHHHHHhhhhhhhHHHHH-hhccCCCCCCeEEEEcCCccHHHHHHHHHCCC------CeEEEeec-hhHhhhCCCCC-
Q 035738          163 NKHFNTVMYNYTSLVMSNIL-ESYKGFDNIKQLVDVGGGIGVTLQAITTKYPY------IKGINFDL-PHVIEHVPPHP-  233 (333)
Q Consensus       163 ~~~f~~~m~~~~~~~~~~~~-~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~~~-  233 (333)
                      ....+++|...-+..+++.. +.+. .....++|||+||||..+..+++.-++      .+++++|+ |++++.+++.. 
T Consensus        73 YD~mND~mSlGiHRlWKd~~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~  151 (296)
T KOG1540|consen   73 YDIMNDAMSLGIHRLWKDMFVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAK  151 (296)
T ss_pred             HHHHHHHhhcchhHHHHHHhhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHh
Confidence            34567778777776665543 3343 556799999999999999999998877      78999999 99998876531 


Q ss_pred             ------C--e-----------------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccccc
Q 035738          234 ------C--M-----------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKS  282 (333)
Q Consensus       234 ------g--v-----------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~  282 (333)
                            +  +                       .-+.+|++.+  +.|++++|+|||||++.+.|+..-++..   ...+
T Consensus       152 ~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLKpGGrf~cLeFskv~~~~---l~~f  226 (296)
T KOG1540|consen  152 KRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLKPGGRFSCLEFSKVENEP---LKWF  226 (296)
T ss_pred             hcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHH--HHHHHHHHhcCCCcEEEEEEccccccHH---HHHH
Confidence                  1  1                       5567788776  9999999999999999999986544211   1111


Q ss_pred             cc-----------------chhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeE
Q 035738          283 NS-----------------DSDVLMMIQSPGGKERTRHEFMTLATGAGFSGIS  318 (333)
Q Consensus       283 ~~-----------------~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~  318 (333)
                      ..                 +....++.+. =-+..+.+++..+.++|||+.+.
T Consensus       227 y~~ysf~VlpvlG~~iagd~~sYqYLveS-I~rfp~qe~f~~miedaGF~~~~  278 (296)
T KOG1540|consen  227 YDQYSFDVLPVLGEIIAGDRKSYQYLVES-IRRFPPQEEFASMIEDAGFSSVN  278 (296)
T ss_pred             HHhhhhhhhchhhHhhhhhHhhhhhHHhh-hhcCCCHHHHHHHHHHcCCcccc
Confidence            11                 1111122221 12356899999999999999887

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.51  E-value=2.9e-15  Score=130.25  Aligned_cols=140  Identities=16%  Similarity=0.244  Sum_probs=63.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC------CCe-----------------------E
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH------PCM-----------------------W  236 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~gv-----------------------~  236 (333)
                      ..++.+|||||||||..+..+++.. |+.+++++|+ +.|++.+++.      .++                       +
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f  124 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF  124 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence            5567899999999999999999875 6789999999 8999988642      111                       6


Q ss_pred             EEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchh----------------hHHHhhCCCCCcC
Q 035738          237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSD----------------VLMMIQSPGGKER  300 (333)
Q Consensus       237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d----------------~~m~~~~~~g~~r  300 (333)
                      .||+++|..  +.|++++++|||||+++|+|...|+.+-..  ..+..++.                ..++..+ -....
T Consensus       125 glrn~~d~~--~~l~E~~RVLkPGG~l~ile~~~p~~~~~~--~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~S-i~~f~  199 (233)
T PF01209_consen  125 GLRNFPDRE--RALREMYRVLKPGGRLVILEFSKPRNPLLR--ALYKFYFKYILPLIGRLLSGDREAYRYLPES-IRRFP  199 (233)
T ss_dssp             -GGG-SSHH--HHHHHHHHHEEEEEEEEEEEEEB-SSHHHH--HHHHH--------------------------------
T ss_pred             hHHhhCCHH--HHHHHHHHHcCCCeEEEEeeccCCCCchhh--ceeeeeecccccccccccccccccccccccc-ccccc
Confidence            688888765  899999999999999999999887642100  00000000                0001000 01234


Q ss_pred             CHHHHHHHHHhCCCCeeEEeecCCce-eEEEEe
Q 035738          301 TRHEFMTLATGAGFSGISCERAIGNL-WVMEFY  332 (333)
Q Consensus       301 t~~e~~~ll~~aGf~~~~~~~~~~~~-~vie~~  332 (333)
                      +.+++.++++++||+.++..+...+. .+..++
T Consensus       200 ~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~  232 (233)
T PF01209_consen  200 SPEELKELLEEAGFKNVEYRPLTFGIVTIHVGT  232 (233)
T ss_dssp             ---------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccC
Confidence            78999999999999999998876554 344443

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.48  E-value=4.5e-14  Score=124.53  Aligned_cols=131  Identities=18%  Similarity=0.157  Sum_probs=92.1

Q ss_pred             CCCCeEEEEcCCccHHHHHHHH--HCCCCeEEEeec-hhHhhhCCCC------C-Ce---------------------EE
Q 035738          189 DNIKQLVDVGGGIGVTLQAITT--KYPYIKGINFDL-PHVIEHVPPH------P-CM---------------------WI  237 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~--~~p~~~~~~~D~-~~~~~~a~~~------~-gv---------------------~v  237 (333)
                      .+..+|||||||+|..+..+++  .+|+.+++++|+ +.+++.++++      . .+                     .+
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~  134 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT  134 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence            4667999999999999999988  468999999999 8999887542      0 11                     66


Q ss_pred             EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhH-----------HH--hhCCCCCcCCHHH
Q 035738          238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVL-----------MM--IQSPGGKERTRHE  304 (333)
Q Consensus       238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~-----------m~--~~~~~g~~rt~~e  304 (333)
                      +|.+++++..+++++++++|+|||.+++.|.+..++...... ....+.+..           ..  .....-...+.++
T Consensus       135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~  213 (247)
T PRK15451        135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET  213 (247)
T ss_pred             HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence            788887777899999999999999999999876654322100 000011110           00  0000112348999


Q ss_pred             HHHHHHhCCCCeeEEe
Q 035738          305 FMTLATGAGFSGISCE  320 (333)
Q Consensus       305 ~~~ll~~aGf~~~~~~  320 (333)
                      ..+||++|||+.+.++
T Consensus       214 ~~~~L~~aGF~~v~~~  229 (247)
T PRK15451        214 HKARLHKAGFEHSELW  229 (247)
T ss_pred             HHHHHHHcCchhHHHH
Confidence            9999999999877654

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.48  E-value=2.6e-13  Score=112.36  Aligned_cols=153  Identities=12%  Similarity=0.201  Sum_probs=112.5

Q ss_pred             hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CCe-------------------
Q 035738          177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PCM-------------------  235 (333)
Q Consensus       177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~gv-------------------  235 (333)
                      .+.+++..++ .....+|+|+|||+|..+..|++++|...++|+|. ++|++.|++. |++                   
T Consensus        18 Pa~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dll   96 (257)
T COG4106          18 PARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLL   96 (257)
T ss_pred             cHHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchh
Confidence            3567888888 88999999999999999999999999999999999 8999998764 321                   


Q ss_pred             ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhC---CCCCcCCHHHHHHHH
Q 035738          236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQS---PGGKERTRHEFMTLA  309 (333)
Q Consensus       236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~---~~g~~rt~~e~~~ll  309 (333)
                         -+||.++|..  ++|.++...|.|||.|.+.-+..-+.+++..........-+-.....   ......+.+.|.++|
T Consensus        97 faNAvlqWlpdH~--~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lL  174 (257)
T COG4106          97 FANAVLQWLPDHP--ELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELL  174 (257)
T ss_pred             hhhhhhhhccccH--HHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHh
Confidence               7888888876  89999999999999999998866555443211111100001111000   123456899999999


Q ss_pred             HhCCCCeeEEeecC------CceeEEEEeC
Q 035738          310 TGAGFSGISCERAI------GNLWVMEFYK  333 (333)
Q Consensus       310 ~~aGf~~~~~~~~~------~~~~vie~~~  333 (333)
                      ...+ ..+.++.+.      +...|+||+|
T Consensus       175 a~~~-~rvDiW~T~Y~h~l~~a~aIvdWvk  203 (257)
T COG4106         175 APLA-CRVDIWHTTYYHQLPGADAIVDWVK  203 (257)
T ss_pred             Cccc-ceeeeeeeeccccCCCccchhhhee
Confidence            9888 457776653      5567888876

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.47  E-value=6.3e-13  Score=117.88  Aligned_cols=138  Identities=14%  Similarity=0.132  Sum_probs=93.2

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC------------e---
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC------------M---  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g------------v---  235 (333)
                      ...+++.++ .....+|||||||+|.++..+++++|+.+++++|+ +.+++.+++.      .+            |   
T Consensus        18 ~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~fD~v~~~   96 (255)
T PRK14103         18 FYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWKPKPDTDVVVSN   96 (255)
T ss_pred             HHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCCCCCCceEEEEe
Confidence            346677666 66778999999999999999999999999999999 8898877652      00            1   


Q ss_pred             EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccccc---ccchhhH-HHhhCCCCCcCCHHHHHHHHHh
Q 035738          236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKS---NSDSDVL-MMIQSPGGKERTRHEFMTLATG  311 (333)
Q Consensus       236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~---~~~~d~~-m~~~~~~g~~rt~~e~~~ll~~  311 (333)
                      .+||++++..  ++|++++++|+|||++++..+.....+........   ..|.... ...........+.+++.++|++
T Consensus        97 ~~l~~~~d~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~  174 (255)
T PRK14103         97 AALQWVPEHA--DLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTD  174 (255)
T ss_pred             hhhhhCCCHH--HHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHh
Confidence            7778777654  89999999999999999875422111100000000   0111100 0000012234689999999999


Q ss_pred             CCCCeeE
Q 035738          312 AGFSGIS  318 (333)
Q Consensus       312 aGf~~~~  318 (333)
                      +||++..
T Consensus       175 aGf~v~~  181 (255)
T PRK14103        175 AGCKVDA  181 (255)
T ss_pred             CCCeEEE
Confidence            9997543

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.47  E-value=4e-13  Score=117.34  Aligned_cols=147  Identities=16%  Similarity=0.175  Sum_probs=100.1

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC------CCe-----------------
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH------PCM-----------------  235 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~gv-----------------  235 (333)
                      ++..+. .....+|||+|||+|..+..+++.+ |+.+++++|+ +.+++.+++.      +++                 
T Consensus        37 ~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  115 (231)
T TIGR02752        37 TMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSF  115 (231)
T ss_pred             HHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCc
Confidence            444454 6677899999999999999999886 6789999999 7887665431      111                 


Q ss_pred             ------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhh----------------HHHhh
Q 035738          236 ------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDV----------------LMMIQ  293 (333)
Q Consensus       236 ------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~----------------~m~~~  293 (333)
                            ..+|++++..  ++|+++.+.|+|||++++.+...++...  ........+..                .....
T Consensus       116 D~V~~~~~l~~~~~~~--~~l~~~~~~Lk~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  191 (231)
T TIGR02752       116 DYVTIGFGLRNVPDYM--QVLREMYRVVKPGGKVVCLETSQPTIPG--FKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQE  191 (231)
T ss_pred             cEEEEecccccCCCHH--HHHHHHHHHcCcCeEEEEEECCCCCChH--HHHHHHHHHcChhHHhhHHhcCCHHHHHHHHH
Confidence                  4456666554  8999999999999999999876543211  00000000000                00000


Q ss_pred             CCCCCcCCHHHHHHHHHhCCCCeeEEeecC-CceeEEEEeC
Q 035738          294 SPGGKERTRHEFMTLATGAGFSGISCERAI-GNLWVMEFYK  333 (333)
Q Consensus       294 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~  333 (333)
                       .....++.+++.++|+++||+.+++.... +..+++.++|
T Consensus       192 -~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~  231 (231)
T TIGR02752       192 -STRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK  231 (231)
T ss_pred             -HHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence             01234578999999999999999998887 5566777765

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.46  E-value=1.1e-12  Score=116.60  Aligned_cols=135  Identities=15%  Similarity=0.260  Sum_probs=96.3

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CCe------------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PCM------------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~gv------------------  235 (333)
                      ..+++.+. +.+..+|||||||+|..+..+++.+ ..+++++|+ +.+++.+++.    ..+                  
T Consensus        42 ~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD  119 (263)
T PTZ00098         42 TKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFD  119 (263)
T ss_pred             HHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeE
Confidence            45666665 7788999999999999999998765 579999999 7777665531    011                  


Q ss_pred             -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHH
Q 035738          236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLAT  310 (333)
Q Consensus       236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~  310 (333)
                           .++++++.++..++|++++++|+|||++++.|....+...  +..    ...- +... ......+.++|.++|+
T Consensus       120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~--~~~----~~~~-~~~~-~~~~~~~~~~~~~~l~  191 (263)
T PTZ00098        120 MIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN--WDE----EFKA-YIKK-RKYTLIPIQEYGDLIK  191 (263)
T ss_pred             EEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC--cHH----HHHH-HHHh-cCCCCCCHHHHHHHHH
Confidence                 3345566556679999999999999999999987654211  100    0110 1111 1223468899999999


Q ss_pred             hCCCCeeEEeecC
Q 035738          311 GAGFSGISCERAI  323 (333)
Q Consensus       311 ~aGf~~~~~~~~~  323 (333)
                      ++||+.+++....
T Consensus       192 ~aGF~~v~~~d~~  204 (263)
T PTZ00098        192 SCNFQNVVAKDIS  204 (263)
T ss_pred             HCCCCeeeEEeCc
Confidence            9999999987754

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.39  E-value=5.5e-12  Score=114.94  Aligned_cols=120  Identities=25%  Similarity=0.329  Sum_probs=90.2

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC--------------------e---EEEccC
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC--------------------M---WILHDW  241 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g--------------------v---~vLh~~  241 (333)
                      ....+|||||||+|..+..+++..+..+++++|. +.+++.+++.   .+                    +   .++|++
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~  191 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW  191 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence            3567999999999999999999988889999999 7888776542   11                    0   567788


Q ss_pred             ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEee
Q 035738          242 NDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCER  321 (333)
Q Consensus       242 ~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~  321 (333)
                      ++.+  ++|++++++|+|||++++.+...++..    ..+  ...+..+       ...+.+|+.++|+++||+.+++..
T Consensus       192 ~d~~--~~L~e~~rvLkPGG~LvIi~~~~p~~~----~~r--~~~~~~~-------~~~t~eEl~~lL~~aGF~~V~i~~  256 (340)
T PLN02490        192 PDPQ--RGIKEAYRVLKIGGKACLIGPVHPTFW----LSR--FFADVWM-------LFPKEEEYIEWFTKAGFKDVKLKR  256 (340)
T ss_pred             CCHH--HHHHHHHHhcCCCcEEEEEEecCcchh----HHH--Hhhhhhc-------cCCCHHHHHHHHHHCCCeEEEEEE
Confidence            8765  799999999999999999877544311    000  0111111       135789999999999999999887


Q ss_pred             cC
Q 035738          322 AI  323 (333)
Q Consensus       322 ~~  323 (333)
                      ..
T Consensus       257 i~  258 (340)
T PLN02490        257 IG  258 (340)
T ss_pred             cC
Confidence            64

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.38  E-value=1.2e-11  Score=108.43  Aligned_cols=148  Identities=15%  Similarity=0.178  Sum_probs=100.5

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC-------CCe---------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH-------PCM---------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~gv---------------  235 (333)
                      .++..+. ..+..+|||||||+|.++..+++.+| +.+++++|+ +.+++.+++.       ..+               
T Consensus        42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  120 (239)
T PRK00216         42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN  120 (239)
T ss_pred             HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence            3444444 44568999999999999999999998 789999999 7776655432       001               


Q ss_pred             --------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHH----hhCCC-------
Q 035738          236 --------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMM----IQSPG-------  296 (333)
Q Consensus       236 --------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~----~~~~~-------  296 (333)
                              .++|++++..  .+|+++.+.|+|||++++.+...+.....   .....++...++    ....+       
T Consensus       121 ~~D~I~~~~~l~~~~~~~--~~l~~~~~~L~~gG~li~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (239)
T PRK00216        121 SFDAVTIAFGLRNVPDID--KALREMYRVLKPGGRLVILEFSKPTNPPL---KKAYDFYLFKVLPLIGKLISKNAEAYSY  195 (239)
T ss_pred             CccEEEEecccccCCCHH--HHHHHHHHhccCCcEEEEEEecCCCchHH---HHHHHHHHHhhhHHHHHHHcCCcHHHHH
Confidence                    5567676554  89999999999999999999876543210   000000000000    00001       


Q ss_pred             -----CCcCCHHHHHHHHHhCCCCeeEEeecC-CceeEEEEeC
Q 035738          297 -----GKERTRHEFMTLATGAGFSGISCERAI-GNLWVMEFYK  333 (333)
Q Consensus       297 -----g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~  333 (333)
                           ...++.++|.++|+++||+.+++.... +...++.++|
T Consensus       196 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~  238 (239)
T PRK00216        196 LAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK  238 (239)
T ss_pred             HHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence                 123578899999999999999999875 5567777765

>PLN02244 tocopherol O-methyltransferase

Probab=99.37  E-value=6.1e-12  Score=115.95  Aligned_cols=131  Identities=18%  Similarity=0.171  Sum_probs=88.6

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe-----------------------EE
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM-----------------------WI  237 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv-----------------------~v  237 (333)
                      ....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++.       ..+                       .+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~  195 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES  195 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence            567899999999999999999988 679999999 7777655431       011                       55


Q ss_pred             EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCc-ccc-ccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCC
Q 035738          238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTS-IES-KSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFS  315 (333)
Q Consensus       238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~-~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~  315 (333)
                      +|++++..  +++++++++|+|||+++|.+....+..... ... .....++-...... --...+.++|.++++++||.
T Consensus       196 ~~h~~d~~--~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~~aGf~  272 (340)
T PLN02244        196 GEHMPDKR--KFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAESLGLQ  272 (340)
T ss_pred             hhccCCHH--HHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHCCCC
Confidence            66777654  899999999999999999987654321110 000 00000111010000 11234799999999999999


Q ss_pred             eeEEeecC
Q 035738          316 GISCERAI  323 (333)
Q Consensus       316 ~~~~~~~~  323 (333)
                      .+++....
T Consensus       273 ~v~~~d~s  280 (340)
T PLN02244        273 DIKTEDWS  280 (340)
T ss_pred             eeEeeeCc
Confidence            99887654

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.37  E-value=3.8e-12  Score=111.78  Aligned_cols=138  Identities=19%  Similarity=0.246  Sum_probs=107.3

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C-Ce--------------
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P-CM--------------  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-gv--------------  235 (333)
                      .+.+.+.+. +.++.+|||||||.|.++..++++| +.+++++++ ++..+.+++.      . .+              
T Consensus        61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f  138 (283)
T COG2230          61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF  138 (283)
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence            345667776 9999999999999999999999999 899999999 6777666542      1 11              


Q ss_pred             ------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHH
Q 035738          236 ------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLA  309 (333)
Q Consensus       236 ------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll  309 (333)
                            -+++++..+.-...++++++.|+|||++++.....++....    ....|+.   -..+++|..++.+++.+..
T Consensus       139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~----~~~~~i~---~yiFPgG~lPs~~~i~~~~  211 (283)
T COG2230         139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR----RFPDFID---KYIFPGGELPSISEILELA  211 (283)
T ss_pred             ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc----cchHHHH---HhCCCCCcCCCHHHHHHHH
Confidence                  45556666666789999999999999999999987764321    1122222   2335899999999999999


Q ss_pred             HhCCCCeeEEeecCC
Q 035738          310 TGAGFSGISCERAIG  324 (333)
Q Consensus       310 ~~aGf~~~~~~~~~~  324 (333)
                      +++||++......+.
T Consensus       212 ~~~~~~v~~~~~~~~  226 (283)
T COG2230         212 SEAGFVVLDVESLRP  226 (283)
T ss_pred             HhcCcEEehHhhhcH
Confidence            999999888766553

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.35  E-value=8.3e-13  Score=117.41  Aligned_cols=143  Identities=15%  Similarity=0.196  Sum_probs=94.7

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC----e--------------
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC----M--------------  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g----v--------------  235 (333)
                      ...+++.+. +.++.+|||||||.|.++..+++++ +++++++.+ +.-.+.+++.   .|    +              
T Consensus        51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f  128 (273)
T PF02353_consen   51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF  128 (273)
T ss_dssp             HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred             HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence            345677776 8899999999999999999999999 789999998 5555554321   11    1              


Q ss_pred             ------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHH
Q 035738          236 ------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLA  309 (333)
Q Consensus       236 ------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll  309 (333)
                            .++.++.++....+++++.+.|+|||++++...+..+.....  .. ....++..-..+|+|..++.+++...+
T Consensus       129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~--~~-~~~~~~i~kyiFPgg~lps~~~~~~~~  205 (273)
T PF02353_consen  129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHA--ER-RSSSDFIRKYIFPGGYLPSLSEILRAA  205 (273)
T ss_dssp             SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHH--CT-TCCCHHHHHHTSTTS---BHHHHHHHH
T ss_pred             CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchh--hc-CCCceEEEEeeCCCCCCCCHHHHHHHH
Confidence                  445666767777999999999999999999888776532110  00 001122223335899999999999999


Q ss_pred             HhCCCCeeEEeecCCc
Q 035738          310 TGAGFSGISCERAIGN  325 (333)
Q Consensus       310 ~~aGf~~~~~~~~~~~  325 (333)
                      +++||++..+...+.+
T Consensus       206 ~~~~l~v~~~~~~~~h  221 (273)
T PF02353_consen  206 EDAGLEVEDVENLGRH  221 (273)
T ss_dssp             HHTT-EEEEEEE-HHH
T ss_pred             hcCCEEEEEEEEcCcC
Confidence            9999999888776533

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.34  E-value=1.2e-11  Score=103.48  Aligned_cols=138  Identities=16%  Similarity=0.121  Sum_probs=107.3

Q ss_pred             eEEEEcCCccHHHHHHHHHCCCCeEEEeech-hHhhhCCC------CCC-----------------------------e-
Q 035738          193 QLVDVGGGIGVTLQAITTKYPYIKGINFDLP-HVIEHVPP------HPC-----------------------------M-  235 (333)
Q Consensus       193 ~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~g-----------------------------v-  235 (333)
                      +|||||+|||.++..+++++|+++..--|.+ ......++      .++                             | 
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            6999999999999999999999988666662 22111110      000                             0 


Q ss_pred             --EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCC
Q 035738          236 --WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAG  313 (333)
Q Consensus       236 --~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aG  313 (333)
                        +++|-.+.+.+..+++.+.++|+|||.|++.-++..++.-.   ..-...+|-..-...+....|+.+++.++.+++|
T Consensus       108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~t---s~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G  184 (204)
T PF06080_consen  108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFT---SESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG  184 (204)
T ss_pred             ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeC---CcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence              89999999999999999999999999999999988765321   1233556666654445677899999999999999


Q ss_pred             CCeeEEeecCCceeEEEEeC
Q 035738          314 FSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       314 f~~~~~~~~~~~~~vie~~~  333 (333)
                      |+.++.+.++...-.+.++|
T Consensus       185 L~l~~~~~MPANN~~Lvfrk  204 (204)
T PF06080_consen  185 LELEEDIDMPANNLLLVFRK  204 (204)
T ss_pred             CccCcccccCCCCeEEEEeC
Confidence            99999999998877777665

The function of this family is unknown.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.33  E-value=2.2e-12  Score=105.82  Aligned_cols=121  Identities=17%  Similarity=0.159  Sum_probs=85.4

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------------CC---e----EEEccCChhHHH
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------------PC---M----WILHDWNDEHCL  247 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~g---v----~vLh~~~~~~~~  247 (333)
                      .....+|||||||+|.++..+.+...  +++++|+ +.+++.....            .+   +    .+||++++..  
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~--   95 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPE--   95 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHH--
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhcccHH--
Confidence            45778999999999999999966544  8999999 7777551110            01   1    8889998654  


Q ss_pred             HHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeE
Q 035738          248 KLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGIS  318 (333)
Q Consensus       248 ~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~  318 (333)
                      .+|+++++.|+|||++++.++......    ...+..+ ....... .....++.++|+++++++||++++
T Consensus        96 ~~l~~l~~~LkpgG~l~~~~~~~~~~~----~~~~~~~-~~~~~~~-~~~~~~~~~~~~~ll~~~G~~iv~  160 (161)
T PF13489_consen   96 EFLKELSRLLKPGGYLVISDPNRDDPS----PRSFLKW-RYDRPYG-GHVHFFSPDELRQLLEQAGFEIVE  160 (161)
T ss_dssp             HHHHHHHHCEEEEEEEEEEEEBTTSHH----HHHHHHC-CGTCHHT-TTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred             HHHHHHHHhcCCCCEEEEEEcCCcchh----hhHHHhc-CCcCccC-ceeccCCHHHHHHHHHHCCCEEEE
Confidence            999999999999999999999764310    0001111 1111100 134567999999999999999875

...

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.33  E-value=1.1e-11  Score=119.64  Aligned_cols=133  Identities=16%  Similarity=0.251  Sum_probs=96.4

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CCe----------------
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PCM----------------  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~gv----------------  235 (333)
                      ...+++.+. .++..+|||||||+|..+..+++.+ +.+++++|+ +.+++.|+++     ..+                
T Consensus       255 te~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~  332 (475)
T PLN02336        255 TKEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS  332 (475)
T ss_pred             HHHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence            344566555 6677899999999999999998876 679999999 7888766432     001                


Q ss_pred             -------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHH
Q 035738          236 -------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTL  308 (333)
Q Consensus       236 -------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~l  308 (333)
                             .+++++++..  ++|++++++|+|||++++.+..........      ..... .. . .+...++.+++.++
T Consensus       333 fD~I~s~~~l~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~------~~~~~-~~-~-~g~~~~~~~~~~~~  401 (475)
T PLN02336        333 FDVIYSRDTILHIQDKP--ALFRSFFKWLKPGGKVLISDYCRSPGTPSP------EFAEY-IK-Q-RGYDLHDVQAYGQM  401 (475)
T ss_pred             EEEEEECCcccccCCHH--HHHHHHHHHcCCCeEEEEEEeccCCCCCcH------HHHHH-HH-h-cCCCCCCHHHHHHH
Confidence                   4566676654  899999999999999999998765422111      11111 11 1 24567789999999


Q ss_pred             HHhCCCCeeEEeecC
Q 035738          309 ATGAGFSGISCERAI  323 (333)
Q Consensus       309 l~~aGf~~~~~~~~~  323 (333)
                      ++++||+++++....
T Consensus       402 l~~aGF~~i~~~d~~  416 (475)
T PLN02336        402 LKDAGFDDVIAEDRT  416 (475)
T ss_pred             HHHCCCeeeeeecch
Confidence            999999999776543

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.32  E-value=4.4e-11  Score=103.59  Aligned_cols=144  Identities=16%  Similarity=0.178  Sum_probs=97.5

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC----C----------------C-e--
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH----P----------------C-M--  235 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~----~----------------g-v--  235 (333)
                      ++..+. ..+..+|||+|||+|..+..+++.+|. .+++++|+ +.+++.+++.    .                + +  
T Consensus        31 ~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~  109 (223)
T TIGR01934        31 AVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDA  109 (223)
T ss_pred             HHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEE
Confidence            334333 446789999999999999999999987 78999999 6776654321    0                0 1  


Q ss_pred             ----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCC--C-------------
Q 035738          236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSP--G-------------  296 (333)
Q Consensus       236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~--~-------------  296 (333)
                          .++|+.++.  ..+|+++.+.|+|||++++.+...+....      +....+..+....+  .             
T Consensus       110 i~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (223)
T TIGR01934       110 VTIAFGLRNVTDI--QKALREMYRVLKPGGRLVILEFSKPANAL------LKKFYKFYLKNVLPSIGGLISKNAEAYTYL  181 (223)
T ss_pred             EEEeeeeCCcccH--HHHHHHHHHHcCCCcEEEEEEecCCCchh------hHHHHHHHHHHhhhhhhhhhcCCchhhHHH
Confidence                455666654  48999999999999999999986543210      01111111110000  0             


Q ss_pred             ----CCcCCHHHHHHHHHhCCCCeeEEeecCCce-eEEEEeC
Q 035738          297 ----GKERTRHEFMTLATGAGFSGISCERAIGNL-WVMEFYK  333 (333)
Q Consensus       297 ----g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~-~vie~~~  333 (333)
                          ....+.++|.++|+++||+.+++.+..++. .++.++|
T Consensus       182 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~  223 (223)
T TIGR01934       182 PESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK  223 (223)
T ss_pred             HHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence                123478899999999999999999887764 3555543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR00452 methyltransferase, putative

Probab=99.31  E-value=2.7e-11  Score=109.54  Aligned_cols=134  Identities=13%  Similarity=0.086  Sum_probs=89.3

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC-------CC-------------C----
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP-------PH-------------P----  233 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~-------------~----  233 (333)
                      ..++..+. .....+|||||||+|.++..++...+. +++++|. +.++..++       ..             +    
T Consensus       111 ~~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~  188 (314)
T TIGR00452       111 DRVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA  188 (314)
T ss_pred             HHHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence            34555444 445689999999999999999888764 7899998 65554321       00             0    


Q ss_pred             -C-e---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHH
Q 035738          234 -C-M---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTL  308 (333)
Q Consensus       234 -g-v---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~l  308 (333)
                       + |   .+||+++++.  ..|++++++|+|||.|++.+.+.+.........   ....-.|. .  .-..++.+++.+|
T Consensus       189 FD~V~s~gvL~H~~dp~--~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p---~~ry~k~~-n--v~flpS~~~L~~~  260 (314)
T TIGR00452       189 FDTVFSMGVLYHRKSPL--EHLKQLKHQLVIKGELVLETLVIDGDLNTVLVP---KDRYAKMK-N--VYFIPSVSALKNW  260 (314)
T ss_pred             cCEEEEcchhhccCCHH--HHHHHHHHhcCCCCEEEEEEEEecCccccccCc---hHHHHhcc-c--cccCCCHHHHHHH
Confidence             0 1   6777777664  899999999999999999887765432110000   00000011 0  1124589999999


Q ss_pred             HHhCCCCeeEEeec
Q 035738          309 ATGAGFSGISCERA  322 (333)
Q Consensus       309 l~~aGf~~~~~~~~  322 (333)
                      |+++||+.+++...
T Consensus       261 L~~aGF~~V~i~~~  274 (314)
T TIGR00452       261 LEKVGFENFRILDV  274 (314)
T ss_pred             HHHCCCeEEEEEec
Confidence            99999999988754

Known examples to date are restricted to the proteobacteria.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.30  E-value=1.4e-11  Score=107.08  Aligned_cols=117  Identities=16%  Similarity=0.286  Sum_probs=85.9

Q ss_pred             CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------C---------------C---e----EEEccC
Q 035738          192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------P---------------C---M----WILHDW  241 (333)
Q Consensus       192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~---------------g---v----~vLh~~  241 (333)
                      .+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++.       .               +   +    .++|++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~   80 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI   80 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence            3799999999999999999999999999999 7776655431       0               0   0    445666


Q ss_pred             ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEee
Q 035738          242 NDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCER  321 (333)
Q Consensus       242 ~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~  321 (333)
                      ++.  ..+|+++++.|+|||++++.+...+......  .      +     . ......+.++|.++++++||++++...
T Consensus        81 ~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~------~-----~-~~~~~~s~~~~~~~l~~~Gf~~~~~~~  144 (224)
T smart00828       81 KDK--MDLFSNISRHLKDGGHLVLADFIANLLSAIE--H------E-----E-TTSYLVTREEWAELLARNNLRVVEGVD  144 (224)
T ss_pred             CCH--HHHHHHHHHHcCCCCEEEEEEcccccCcccc--c------c-----c-cccccCCHHHHHHHHHHCCCeEEEeEE
Confidence            554  4899999999999999999988543211000  0      0     0 012245789999999999999999887


Q ss_pred             cCC
Q 035738          322 AIG  324 (333)
Q Consensus       322 ~~~  324 (333)
                      ...
T Consensus       145 ~~~  147 (224)
T smart00828      145 ASL  147 (224)
T ss_pred             CcH
Confidence            653

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.28  E-value=5.2e-11  Score=108.74  Aligned_cols=131  Identities=15%  Similarity=0.107  Sum_probs=87.3

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC-------CCCC------------------
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP-------PHPC------------------  234 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~g------------------  234 (333)
                      +...++ .-.+.+|||||||+|.++..+++..+. +++++|. +.++..++       ...+                  
T Consensus       114 l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD  191 (322)
T PRK15068        114 VLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFD  191 (322)
T ss_pred             HHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcC
Confidence            344444 234579999999999999999998776 5999998 55443211       0001                  


Q ss_pred             e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCC-CCcCCHHHHHHHH
Q 035738          235 M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPG-GKERTRHEFMTLA  309 (333)
Q Consensus       235 v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~-g~~rt~~e~~~ll  309 (333)
                      +    .+||+..+..  .+|+++++.|+|||.+++.+.+.+.........   .. ....+   .+ -..++.+++.+||
T Consensus       192 ~V~s~~vl~H~~dp~--~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p---~~-~y~~~---~~~~~lps~~~l~~~L  262 (322)
T PRK15068        192 TVFSMGVLYHRRSPL--DHLKQLKDQLVPGGELVLETLVIDGDENTVLVP---GD-RYAKM---RNVYFIPSVPALKNWL  262 (322)
T ss_pred             EEEECChhhccCCHH--HHHHHHHHhcCCCcEEEEEEEEecCCCccccCc---hh-HHhcC---ccceeCCCHHHHHHHH
Confidence            1    5677776654  899999999999999988776655432211000   00 00001   11 1246899999999


Q ss_pred             HhCCCCeeEEeec
Q 035738          310 TGAGFSGISCERA  322 (333)
Q Consensus       310 ~~aGf~~~~~~~~  322 (333)
                      +++||+.+++...
T Consensus       263 ~~aGF~~i~~~~~  275 (322)
T PRK15068        263 ERAGFKDVRIVDV  275 (322)
T ss_pred             HHcCCceEEEEeC
Confidence            9999999988765

>PRK04266 fibrillarin; Provisional

Probab=99.27  E-value=9.8e-11  Score=101.35  Aligned_cols=118  Identities=10%  Similarity=0.066  Sum_probs=82.9

Q ss_pred             ccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhh----hCCCCCC--------------------e-EEE
Q 035738          185 YKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIE----HVPPHPC--------------------M-WIL  238 (333)
Q Consensus       185 ~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~g--------------------v-~vL  238 (333)
                      ++ ..+..+|||+|||+|.++..+++..+..+++++|+ +.+++    .+++.++                    + .++
T Consensus        68 l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~  146 (226)
T PRK04266         68 FP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY  146 (226)
T ss_pred             CC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE
Confidence            44 67788999999999999999999888778999999 76655    3332111                    1 667


Q ss_pred             ccCChhH-HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCee
Q 035738          239 HDWNDEH-CLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGI  317 (333)
Q Consensus       239 h~~~~~~-~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~  317 (333)
                      |+.++++ ...+|+++++.|||||+++|.=...+.+              ...     .. .+..++..++++++||+.+
T Consensus       147 ~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d--------------~~~-----~~-~~~~~~~~~~l~~aGF~~i  206 (226)
T PRK04266        147 QDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSID--------------VTK-----DP-KEIFKEEIRKLEEGGFEIL  206 (226)
T ss_pred             ECCCChhHHHHHHHHHHHhcCCCcEEEEEEeccccc--------------CcC-----CH-HHHHHHHHHHHHHcCCeEE
Confidence            8777553 3457899999999999999952211110              000     00 0123455699999999999


Q ss_pred             EEeecC
Q 035738          318 SCERAI  323 (333)
Q Consensus       318 ~~~~~~  323 (333)
                      +.+...
T Consensus       207 ~~~~l~  212 (226)
T PRK04266        207 EVVDLE  212 (226)
T ss_pred             EEEcCC
Confidence            998875

>PRK06922 hypothetical protein; Provisional

Probab=99.26  E-value=2.6e-11  Score=117.31  Aligned_cols=122  Identities=22%  Similarity=0.319  Sum_probs=89.5

Q ss_pred             CChhhhhcCCchhHHHHHHHHhhhhhhh--HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHh
Q 035738          150 MHTFEYAGLDPGFNKHFNTVMYNYTSLV--MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVI  226 (333)
Q Consensus       150 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~--~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~  226 (333)
                      ..+|+++...++..++|...|.......  .......++ +.++.+|||||||+|..+..+++.+|+.+++++|+ +.++
T Consensus       377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML  455 (677)
T PRK06922        377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI  455 (677)
T ss_pred             hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence            3578888888888888877665533321  111122233 55678999999999999999999999999999999 7778


Q ss_pred             hhCCCC------------------C-----C-e------EEEccC-----------ChhHHHHHHHHHHHhCCCCcEEEE
Q 035738          227 EHVPPH------------------P-----C-M------WILHDW-----------NDEHCLKLLKNCYKSIPEDGKVIA  265 (333)
Q Consensus       227 ~~a~~~------------------~-----g-v------~vLh~~-----------~~~~~~~lL~~~~~~L~pgG~l~i  265 (333)
                      +.+++.                  +     + +      .++|+|           ++++..++|++++++|||||+++|
T Consensus       456 e~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII  535 (677)
T PRK06922        456 DTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII  535 (677)
T ss_pred             HHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence            766431                  1     0 0      445654           345678999999999999999999


Q ss_pred             EeeecCC
Q 035738          266 VELMLPE  272 (333)
Q Consensus       266 ~e~~~~~  272 (333)
                      .|.+.++
T Consensus       536 ~D~v~~E  542 (677)
T PRK06922        536 RDGIMTE  542 (677)
T ss_pred             EeCccCC
Confidence            9976654

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.25  E-value=3.6e-11  Score=106.58  Aligned_cols=136  Identities=16%  Similarity=0.137  Sum_probs=88.4

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe----------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM----------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv----------------  235 (333)
                      .+++.++  ....+|||||||+|.++..+++.  ..+++++|+ +.+++.|++.       .++                
T Consensus        36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~  111 (255)
T PRK11036         36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET  111 (255)
T ss_pred             HHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence            4445443  35679999999999999999986  467999999 8888776532       111                


Q ss_pred             --------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhH---HH-----hhCCCCCc
Q 035738          236 --------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVL---MM-----IQSPGGKE  299 (333)
Q Consensus       236 --------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~---m~-----~~~~~g~~  299 (333)
                              .+||+++++.  .+|++++++|+|||+++++...........   .....++..   +.     ...+ ...
T Consensus       112 ~fD~V~~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p-~~~  185 (255)
T PRK11036        112 PVDLILFHAVLEWVADPK--SVLQTLWSVLRPGGALSLMFYNANGLLMHN---MVAGNFDYVQAGMPKRKKRTLSP-DYP  185 (255)
T ss_pred             CCCEEEehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEEEECccHHHHHH---HHccChHHHHhcCccccccCCCC-CCC
Confidence                    5666676664  899999999999999998866432100000   000000000   00     0000 123


Q ss_pred             CCHHHHHHHHHhCCCCeeEEeecCCc
Q 035738          300 RTRHEFMTLATGAGFSGISCERAIGN  325 (333)
Q Consensus       300 rt~~e~~~ll~~aGf~~~~~~~~~~~  325 (333)
                      .+.+++.++|+++||+++++.-...+
T Consensus       186 ~~~~~l~~~l~~aGf~~~~~~gi~~~  211 (255)
T PRK11036        186 LDPEQVYQWLEEAGWQIMGKTGVRVF  211 (255)
T ss_pred             CCHHHHHHHHHHCCCeEeeeeeEEEE
Confidence            57899999999999999877655433

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.25  E-value=9.3e-11  Score=104.15  Aligned_cols=135  Identities=13%  Similarity=0.161  Sum_probs=90.2

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CCe--------------------
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PCM--------------------  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~gv--------------------  235 (333)
                      ...++..++ ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. +++                    
T Consensus        20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~   98 (258)
T PRK01683         20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF   98 (258)
T ss_pred             HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence            446666666 67788999999999999999999999999999999 8888877653 111                    


Q ss_pred             --EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccc------cccchhhHHHhhCCCCCcCCHHHHHH
Q 035738          236 --WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESK------SNSDSDVLMMIQSPGGKERTRHEFMT  307 (333)
Q Consensus       236 --~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~------~~~~~d~~m~~~~~~g~~rt~~e~~~  307 (333)
                        .++|..++..  ++|++++++|+|||++++.-+   +....+....      ...|...............+.+++.+
T Consensus        99 ~~~~l~~~~d~~--~~l~~~~~~LkpgG~~~~~~~---~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  173 (258)
T PRK01683         99 ANASLQWLPDHL--ELFPRLVSLLAPGGVLAVQMP---DNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYD  173 (258)
T ss_pred             EccChhhCCCHH--HHHHHHHHhcCCCcEEEEECC---CCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHH
Confidence              6677776654  899999999999999988632   2111000000      00011110000000123457889999


Q ss_pred             HHHhCCCCeeEE
Q 035738          308 LATGAGFSGISC  319 (333)
Q Consensus       308 ll~~aGf~~~~~  319 (333)
                      ++.++|+. +++
T Consensus       174 ~l~~~g~~-v~~  184 (258)
T PRK01683        174 ALAPAACR-VDI  184 (258)
T ss_pred             HHHhCCCc-eee
Confidence            99999986 444

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.24  E-value=9.1e-11  Score=99.84  Aligned_cols=120  Identities=16%  Similarity=0.117  Sum_probs=86.0

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe----------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM----------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv----------------  235 (333)
                      +.+++.++ .....+|||+|||+|..+..++++  ..+++++|+ +.+++.+++.      .++                
T Consensus        20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f   96 (197)
T PRK11207         20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY   96 (197)
T ss_pred             HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence            44555555 445689999999999999999986  468999999 7787765431      111                


Q ss_pred             ------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHH
Q 035738          236 ------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLA  309 (333)
Q Consensus       236 ------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll  309 (333)
                            .++|++++++...++++++++|+|||++++++....++....      .  .        -....+.+|+.+++
T Consensus        97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~------~--~--------~~~~~~~~el~~~~  160 (197)
T PRK11207         97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT------V--G--------FPFAFKEGELRRYY  160 (197)
T ss_pred             CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC------C--C--------CCCccCHHHHHHHh
Confidence                  567888877788999999999999999888776544321100      0  0        01124688999999


Q ss_pred             HhCCCCeeEE
Q 035738          310 TGAGFSGISC  319 (333)
Q Consensus       310 ~~aGf~~~~~  319 (333)
                      +  ||++++.
T Consensus       161 ~--~~~~~~~  168 (197)
T PRK11207        161 E--GWEMVKY  168 (197)
T ss_pred             C--CCeEEEe
Confidence            7  8987766

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.24  E-value=1e-10  Score=104.74  Aligned_cols=125  Identities=15%  Similarity=0.283  Sum_probs=89.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC------CC-----------------e------E
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH------PC-----------------M------W  236 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~------~g-----------------v------~  236 (333)
                      .....+|||||||+|..+..+++. .+..+++++|+ +.+++.++++      .+                 +      .
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC  154 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence            567889999999999988877765 46678999999 8888877642      11                 1      4


Q ss_pred             EEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCe
Q 035738          237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSG  316 (333)
Q Consensus       237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~  316 (333)
                      ++|.+++..  ++|++++++|+|||++++.+.........      ....+..+... ..+...+.++|.++|+++||..
T Consensus       155 v~~~~~d~~--~~l~~~~r~LkpGG~l~i~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~e~~~~l~~aGf~~  225 (272)
T PRK11873        155 VINLSPDKE--RVFKEAFRVLKPGGRFAISDVVLRGELPE------EIRNDAELYAG-CVAGALQEEEYLAMLAEAGFVD  225 (272)
T ss_pred             cccCCCCHH--HHHHHHHHHcCCCcEEEEEEeeccCCCCH------HHHHhHHHHhc-cccCCCCHHHHHHHHHHCCCCc
Confidence            556666544  79999999999999999999875432110      01112222211 2345668999999999999999


Q ss_pred             eEEee
Q 035738          317 ISCER  321 (333)
Q Consensus       317 ~~~~~  321 (333)
                      +++..
T Consensus       226 v~i~~  230 (272)
T PRK11873        226 ITIQP  230 (272)
T ss_pred             eEEEe
Confidence            87754

>PRK08317 hypothetical protein; Provisional

Probab=99.24  E-value=1.1e-10  Score=102.17  Aligned_cols=137  Identities=15%  Similarity=0.198  Sum_probs=90.3

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC-----CCe------------------
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH-----PCM------------------  235 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----~gv------------------  235 (333)
                      +...+. .....+|||+|||+|.++..+++.+ |..+++++|+ +..++.+++.     +++                  
T Consensus        11 ~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   89 (241)
T PRK08317         11 TFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFD   89 (241)
T ss_pred             HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCce
Confidence            444455 6778899999999999999999988 7889999999 7776655432     111                  


Q ss_pred             -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHH
Q 035738          236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLAT  310 (333)
Q Consensus       236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~  310 (333)
                           .+++++++..  .++++++++|+|||++++.++.............  ....+.-..........+..+|.++|+
T Consensus        90 ~v~~~~~~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~  165 (241)
T PRK08317         90 AVRSDRVLQHLEDPA--RALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRA--LMRKILNFWSDHFADPWLGRRLPGLFR  165 (241)
T ss_pred             EEEEechhhccCCHH--HHHHHHHHHhcCCcEEEEEecCCCceeecCCChH--HHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence                 5566666654  8999999999999999999864321100000000  011111111111223345678999999


Q ss_pred             hCCCCeeEEeec
Q 035738          311 GAGFSGISCERA  322 (333)
Q Consensus       311 ~aGf~~~~~~~~  322 (333)
                      ++||+.+++...
T Consensus       166 ~aGf~~~~~~~~  177 (241)
T PRK08317        166 EAGLTDIEVEPY  177 (241)
T ss_pred             HcCCCceeEEEE
Confidence            999998876543

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.22  E-value=1.6e-11  Score=111.59  Aligned_cols=124  Identities=11%  Similarity=0.093  Sum_probs=85.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----C---Ce-----------------------EEE
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----P---CM-----------------------WIL  238 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~---gv-----------------------~vL  238 (333)
                      ...+|||||||+|.++..+++  ++.+++++|. +.+++.|+.+    +   ++                       .+|
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL  208 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI  208 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence            456999999999999998876  4678999999 8888776531    0   11                       678


Q ss_pred             ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCC-----CCcCCHHHHHHHHHhCC
Q 035738          239 HDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPG-----GKERTRHEFMTLATGAG  313 (333)
Q Consensus       239 h~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~-----g~~rt~~e~~~ll~~aG  313 (333)
                      |+++++.  .+|++++++|+|||.++|.+......   ...... ......+ ...+.     .+.++.+|+.++|+++|
T Consensus       209 eHv~d~~--~~L~~l~r~LkPGG~liist~nr~~~---~~~~~i-~~~eyi~-~~lp~gth~~~~f~tp~eL~~lL~~aG  281 (322)
T PLN02396        209 EHVANPA--EFCKSLSALTIPNGATVLSTINRTMR---AYASTI-VGAEYIL-RWLPKGTHQWSSFVTPEELSMILQRAS  281 (322)
T ss_pred             HhcCCHH--HHHHHHHHHcCCCcEEEEEECCcCHH---HHHHhh-hhHHHHH-hcCCCCCcCccCCCCHHHHHHHHHHcC
Confidence            8888775  89999999999999999987643210   000000 0000011 00111     23578999999999999


Q ss_pred             CCeeEEeec
Q 035738          314 FSGISCERA  322 (333)
Q Consensus       314 f~~~~~~~~  322 (333)
                      |+++++...
T Consensus       282 f~i~~~~G~  290 (322)
T PLN02396        282 VDVKEMAGF  290 (322)
T ss_pred             CeEEEEeee
Confidence            999988543

>TIGR03438 probable methyltransferase

Probab=99.21  E-value=1.3e-10  Score=105.48  Aligned_cols=76  Identities=12%  Similarity=0.254  Sum_probs=63.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC-----CCe---------------------------
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH-----PCM---------------------------  235 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-----~gv---------------------------  235 (333)
                      ...+|||+|||+|..+..++++.+ ..+++++|+ +.+++.+++.     |++                           
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~  142 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF  142 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence            557899999999999999999987 688999999 7787655421     211                           


Q ss_pred             ---EEEccCChhHHHHHHHHHHHhCCCCcEEEE
Q 035738          236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIA  265 (333)
Q Consensus       236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i  265 (333)
                         ..+++++++++.++|++++++|+|||.++|
T Consensus       143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li  175 (301)
T TIGR03438       143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI  175 (301)
T ss_pred             EecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence               457778888899999999999999999986

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.20  E-value=1.7e-10  Score=97.95  Aligned_cols=120  Identities=13%  Similarity=0.060  Sum_probs=84.9

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--------------------C---C-
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--------------------P---C-  234 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------------~---g-  234 (333)
                      .+++.++ ...+.+|||+|||+|..+..++++  ..+++++|+ +.+++.+++.                    +   + 
T Consensus        21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~   97 (195)
T TIGR00477        21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF   97 (195)
T ss_pred             HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence            4555555 445679999999999999999985  468999999 7788755321                    0   0 


Q ss_pred             e---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHh
Q 035738          235 M---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATG  311 (333)
Q Consensus       235 v---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~  311 (333)
                      |   .++|+++++....++++++++|+|||++++++....+.. +.       ..        +-....+.+|+.++|+ 
T Consensus        98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~-~~-------~~--------~~~~~~~~~el~~~f~-  160 (195)
T TIGR00477        98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADY-PC-------HM--------PFSFTFKEDELRQYYA-  160 (195)
T ss_pred             EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCC-CC-------CC--------CcCccCCHHHHHHHhC-
Confidence            1   557888877778999999999999999888876533211 00       00        0112457889999995 


Q ss_pred             CCCCeeEEe
Q 035738          312 AGFSGISCE  320 (333)
Q Consensus       312 aGf~~~~~~  320 (333)
                       +|+++...
T Consensus       161 -~~~~~~~~  168 (195)
T TIGR00477       161 -DWELLKYN  168 (195)
T ss_pred             -CCeEEEee
Confidence             58777665

Part of a tellurite-reducing operon tehA and tehB

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.16  E-value=2.3e-10  Score=106.79  Aligned_cols=135  Identities=8%  Similarity=0.081  Sum_probs=96.9

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CC--e--------------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PC--M--------------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~g--v--------------------  235 (333)
                      .+++.+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. .+  +                    
T Consensus       158 ~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~  235 (383)
T PRK11705        158 LICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSV  235 (383)
T ss_pred             HHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEe
Confidence            4555555 6778899999999999999998876 579999999 7888776542 11  1                    


Q ss_pred             EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCC
Q 035738          236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFS  315 (333)
Q Consensus       236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~  315 (333)
                      .++++.++.....+++++.++|+|||++++.+...+.....     ...+++-..   +++|..++.+++.+.++ .||.
T Consensus       236 ~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~-----~~~~i~~yi---fp~g~lps~~~i~~~~~-~~~~  306 (383)
T PRK11705        236 GMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTN-----VDPWINKYI---FPNGCLPSVRQIAQASE-GLFV  306 (383)
T ss_pred             CchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCC-----CCCCceeee---cCCCcCCCHHHHHHHHH-CCcE
Confidence            34566666666789999999999999999988765532111     012222221   36788889999988866 5898


Q ss_pred             eeEEeecCCc
Q 035738          316 GISCERAIGN  325 (333)
Q Consensus       316 ~~~~~~~~~~  325 (333)
                      +.++...+.+
T Consensus       307 v~d~~~~~~h  316 (383)
T PRK11705        307 MEDWHNFGAD  316 (383)
T ss_pred             EEEEecChhh
Confidence            8887766543

>PRK06202 hypothetical protein; Provisional

Probab=99.16  E-value=6.2e-10  Score=97.29  Aligned_cols=125  Identities=17%  Similarity=0.141  Sum_probs=87.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHH----CCCCeEEEeec-hhHhhhCCCC---CCe-----------------------E
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTK----YPYIKGINFDL-PHVIEHVPPH---PCM-----------------------W  236 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---~gv-----------------------~  236 (333)
                      ..+..+|||||||+|.++..+++.    .|+.+++++|+ +.+++.+++.   +++                       .
T Consensus        58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~  137 (232)
T PRK06202         58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH  137 (232)
T ss_pred             CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence            356789999999999999888764    46679999999 8998877653   111                       7


Q ss_pred             EEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhh------CCC-----CCcCCHHHH
Q 035738          237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQ------SPG-----GKERTRHEF  305 (333)
Q Consensus       237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~------~~~-----g~~rt~~e~  305 (333)
                      +||++++++..++|++++++++  |.+++.|...+...        ...+.......      .++     -+.++.+|+
T Consensus       138 ~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~--------~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el  207 (232)
T PRK06202        138 FLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLA--------YALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAEL  207 (232)
T ss_pred             eeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHH--------HHHHHHHHHHhccCceeeccchHHHHhhcCHHHH
Confidence            8999998887899999999997  66777766543210        00000000000      011     135689999


Q ss_pred             HHHHHhCCCCeeEEeecC
Q 035738          306 MTLATGAGFSGISCERAI  323 (333)
Q Consensus       306 ~~ll~~aGf~~~~~~~~~  323 (333)
                      .+++++ ||++...++..
T Consensus       208 ~~ll~~-Gf~~~~~~~~~  224 (232)
T PRK06202        208 AALAPQ-GWRVERQWPFR  224 (232)
T ss_pred             HHHhhC-CCeEEecccee
Confidence            999999 99988877663

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.15  E-value=1.7e-10  Score=97.52  Aligned_cols=125  Identities=21%  Similarity=0.291  Sum_probs=93.6

Q ss_pred             CeEEEEcCCccHHHHHHHHHCCC--CeEEEeec-hhHhhhCCCCCC--------------------------e------E
Q 035738          192 KQLVDVGGGIGVTLQAITTKYPY--IKGINFDL-PHVIEHVPPHPC--------------------------M------W  236 (333)
Q Consensus       192 ~~vlDVGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~~g--------------------------v------~  236 (333)
                      .+||+||||.|.+...+++.+|+  +++..+|. |.+++..+++++                          +      +
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF  152 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF  152 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence            38999999999999999999988  89999998 889888765410                          0      8


Q ss_pred             EEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCC---cCCHHHHHHHHHhCC
Q 035738          237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGK---ERTRHEFMTLATGAG  313 (333)
Q Consensus       237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~---~rt~~e~~~ll~~aG  313 (333)
                      +|...++++-...++++++.|||||.|++.|....+-...  .......++....+. .+|-   ..+.+++.+|+.+||
T Consensus       153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaql--RF~~~~~i~~nfYVR-gDGT~~YfF~~eeL~~~f~~ag  229 (264)
T KOG2361|consen  153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQL--RFKKGQCISENFYVR-GDGTRAYFFTEEELDELFTKAG  229 (264)
T ss_pred             EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHH--hccCCceeecceEEc-cCCceeeeccHHHHHHHHHhcc
Confidence            8888888888999999999999999999999976542110  000112222222222 1332   358999999999999


Q ss_pred             CCeeEE
Q 035738          314 FSGISC  319 (333)
Q Consensus       314 f~~~~~  319 (333)
                      |..++.
T Consensus       230 f~~~~~  235 (264)
T KOG2361|consen  230 FEEVQL  235 (264)
T ss_pred             cchhcc
Confidence            987764

>PRK05785 hypothetical protein; Provisional

Probab=99.15  E-value=2.9e-10  Score=98.74  Aligned_cols=135  Identities=12%  Similarity=0.022  Sum_probs=90.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCC--------------C----e---EEEccCChhHHH
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHP--------------C----M---WILHDWNDEHCL  247 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~--------------g----v---~vLh~~~~~~~~  247 (333)
                      ...+|||||||||..+..+++.+ +.+++++|+ +.+++.+++..              +    |   ..||++++.+  
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~--  127 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIE--  127 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHH--
Confidence            36799999999999999999887 578999999 89998876431              0    1   6788888765  


Q ss_pred             HHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccc-cchh--hHHHhhCCCC-------------CcCCHHHHHHHHHh
Q 035738          248 KLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSN-SDSD--VLMMIQSPGG-------------KERTRHEFMTLATG  311 (333)
Q Consensus       248 ~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~-~~~d--~~m~~~~~~g-------------~~rt~~e~~~ll~~  311 (333)
                      +.|++++++|+|  .+.++|...|+....   ..+. .+..  +..+....++             ...+.+++.+++++
T Consensus       128 ~~l~e~~RvLkp--~~~ile~~~p~~~~~---~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~  202 (226)
T PRK05785        128 KVIAEFTRVSRK--QVGFIAMGKPDNVIK---RKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEK  202 (226)
T ss_pred             HHHHHHHHHhcC--ceEEEEeCCCCcHHH---HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            899999999999  355677655543210   0010 1111  1111110111             23478999999999


Q ss_pred             CCCCeeEEeecCCcee-EEEEeC
Q 035738          312 AGFSGISCERAIGNLW-VMEFYK  333 (333)
Q Consensus       312 aGf~~~~~~~~~~~~~-vie~~~  333 (333)
                      +| ..++......+.. +..+.|
T Consensus       203 ~~-~~~~~~~~~~G~~~~~~~~k  224 (226)
T PRK05785        203 YA-DIKVYEERGLGLVYFVVGSS  224 (226)
T ss_pred             Hh-CceEEEEccccEEEEEEEee
Confidence            84 7788888876654 454443

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.14  E-value=5.5e-10  Score=94.28  Aligned_cols=110  Identities=15%  Similarity=0.323  Sum_probs=79.9

Q ss_pred             HhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe----------------EEE
Q 035738          182 LESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM----------------WIL  238 (333)
Q Consensus       182 ~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv----------------~vL  238 (333)
                      +..+. ..+..+|||||||+|.++..+++++|+.+++++|+ +.+++.++++      .++                .++
T Consensus        24 ~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~  102 (187)
T PRK08287         24 LSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIF  102 (187)
T ss_pred             HHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEE
Confidence            34444 66778999999999999999999999999999999 8888777542      122                222


Q ss_pred             ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeE
Q 035738          239 HDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGIS  318 (333)
Q Consensus       239 h~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~  318 (333)
                      -.........+++++.+.|+|||++++.....+                             +.+++.+++++.||+.++
T Consensus       103 ~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~-----------------------------~~~~~~~~l~~~g~~~~~  153 (187)
T PRK08287        103 IGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLE-----------------------------NLHSALAHLEKCGVSELD  153 (187)
T ss_pred             ECCCccCHHHHHHHHHHhcCCCeEEEEEEecHh-----------------------------hHHHHHHHHHHCCCCcce
Confidence            121222235789999999999999987543111                             145778899999998777


Q ss_pred             Eee
Q 035738          319 CER  321 (333)
Q Consensus       319 ~~~  321 (333)
                      +..
T Consensus       154 ~~~  156 (187)
T PRK08287        154 CVQ  156 (187)
T ss_pred             EEE
Confidence            543

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.14  E-value=4.4e-11  Score=92.04  Aligned_cols=77  Identities=17%  Similarity=0.274  Sum_probs=62.2

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe-----------------------E-EE
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM-----------------------W-IL  238 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv-----------------------~-vL  238 (333)
                      ..+|||||||+|.++..+++.+|..+++++|+ |.+++.++++       +++                       . .+
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~   81 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL   81 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence            57899999999999999999999999999999 8898877643       111                       2 22


Q ss_pred             ccCC-hhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738          239 HDWN-DEHCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       239 h~~~-~~~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      |.+. .++..++|+++++.|+|||+++|.+
T Consensus        82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   82 HFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            3233 2566789999999999999999875

...

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.08  E-value=2.7e-10  Score=96.85  Aligned_cols=123  Identities=18%  Similarity=0.159  Sum_probs=89.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CCe-------------------------EEEcc
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PCM-------------------------WILHD  240 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~gv-------------------------~vLh~  240 (333)
                      ...+|||||||.|.++..+++..  .+++++|+ +..++.|+.+   .++                         .||++
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH  136 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH  136 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence            56799999999999999999987  78999999 8899988854   111                         78888


Q ss_pred             CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchh-hHHHhhCCCC-----CcCCHHHHHHHHHhCCC
Q 035738          241 WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSD-VLMMIQSPGG-----KERTRHEFMTLATGAGF  314 (333)
Q Consensus       241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d-~~m~~~~~~g-----~~rt~~e~~~ll~~aGf  314 (333)
                      +++++  .+++.|.+.+||||.+++........      ..+...+. -..+-.++.|     +...++|+..++.++||
T Consensus       137 v~dp~--~~~~~c~~lvkP~G~lf~STinrt~k------a~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~  208 (243)
T COG2227         137 VPDPE--SFLRACAKLVKPGGILFLSTINRTLK------AYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANL  208 (243)
T ss_pred             cCCHH--HHHHHHHHHcCCCcEEEEeccccCHH------HHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCc
Confidence            99887  79999999999999999888753221      01111111 0011112333     45679999999999999


Q ss_pred             CeeEEeec
Q 035738          315 SGISCERA  322 (333)
Q Consensus       315 ~~~~~~~~  322 (333)
                      .+.....+
T Consensus       209 ~~~~~~g~  216 (243)
T COG2227         209 KIIDRKGL  216 (243)
T ss_pred             eEEeecce
Confidence            88776544

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.05  E-value=6.5e-11  Score=89.15  Aligned_cols=67  Identities=25%  Similarity=0.470  Sum_probs=50.3

Q ss_pred             EEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----C--C----------------------e---EEEccCC
Q 035738          195 VDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----P--C----------------------M---WILHDWN  242 (333)
Q Consensus       195 lDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~--g----------------------v---~vLh~~~  242 (333)
                      ||||||+|.++..+++++|..+++++|+ +.+++.+++.    .  .                      |   ++||+++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~   80 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE   80 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence            7999999999999999999999999999 8999888764    0  0                      0   8888885


Q ss_pred             hhHHHHHHHHHHHhCCCCcEE
Q 035738          243 DEHCLKLLKNCYKSIPEDGKV  263 (333)
Q Consensus       243 ~~~~~~lL~~~~~~L~pgG~l  263 (333)
                      +.  ..+|+++++.|+|||+|
T Consensus        81 ~~--~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   81 DI--EAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -H--HHHHHHHTTT-TSS-EE
T ss_pred             hH--HHHHHHHHHHcCCCCCC
Confidence            44  49999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.05  E-value=2.7e-09  Score=94.35  Aligned_cols=127  Identities=13%  Similarity=0.150  Sum_probs=83.6

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-C--C---------------e---
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-P--C---------------M---  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~--g---------------v---  235 (333)
                      ...+++.++ ..+..+|||+|||+|.++..+.+.  ..+++++|+ +.+++.+++. +  .               .   
T Consensus        31 a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V  107 (251)
T PRK10258         31 ADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA  107 (251)
T ss_pred             HHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence            445556555 446789999999999999888764  468999999 8888876643 0  0               0   


Q ss_pred             ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhC
Q 035738          236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGA  312 (333)
Q Consensus       236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~a  312 (333)
                         ..+|..++.  ..+|++++++|+|||.+++..+....-+.     ....+..+.  ...+.....+.++|.+++...
T Consensus       108 ~s~~~l~~~~d~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~e-----l~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~  178 (251)
T PRK10258        108 WSNLAVQWCGNL--STALRELYRVVRPGGVVAFTTLVQGSLPE-----LHQAWQAVD--ERPHANRFLPPDAIEQALNGW  178 (251)
T ss_pred             EECchhhhcCCH--HHHHHHHHHHcCCCeEEEEEeCCCCchHH-----HHHHHHHhc--cCCccccCCCHHHHHHHHHhC
Confidence               344544544  48999999999999999998775432110     000010000  000123456899999999998


Q ss_pred             CCCe
Q 035738          313 GFSG  316 (333)
Q Consensus       313 Gf~~  316 (333)
                      |+..
T Consensus       179 ~~~~  182 (251)
T PRK10258        179 RYQH  182 (251)
T ss_pred             Ccee
Confidence            8763

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.04  E-value=1.2e-09  Score=94.70  Aligned_cols=125  Identities=10%  Similarity=0.020  Sum_probs=80.9

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe--------------------EEEcc
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM--------------------WILHD  240 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv--------------------~vLh~  240 (333)
                      ....+|||||||+|.++..+++.  ..+++++|+ +.+++.+++.       .++                    .++++
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~  131 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH  131 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence            45789999999999999999875  458999999 8888776542       011                    45667


Q ss_pred             CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHh--hCCCCCcCCHHHHHHHHHhCCCCeeE
Q 035738          241 WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMI--QSPGGKERTRHEFMTLATGAGFSGIS  318 (333)
Q Consensus       241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~--~~~~g~~rt~~e~~~ll~~aGf~~~~  318 (333)
                      ++++...++++++.+.+++++.+.+.    +...   ... ....+.-.+..  ....-..++.+++.++++++||++++
T Consensus       132 ~~~~~~~~~l~~i~~~~~~~~~i~~~----~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~  203 (219)
T TIGR02021       132 YPASDMAKALGHLASLTKERVIFTFA----PKTA---WLA-FLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVR  203 (219)
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEEC----CCch---HHH-HHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeee
Confidence            77777778999999988866444332    1110   000 00000000000  00012245889999999999999998


Q ss_pred             EeecC
Q 035738          319 CERAI  323 (333)
Q Consensus       319 ~~~~~  323 (333)
                      +....
T Consensus       204 ~~~~~  208 (219)
T TIGR02021       204 EGLVS  208 (219)
T ss_pred             eeccc
Confidence            87665

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.03  E-value=2.1e-09  Score=96.99  Aligned_cols=111  Identities=15%  Similarity=0.091  Sum_probs=80.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CC------------------e----EEEccC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PC------------------M----WILHDW  241 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~g------------------v----~vLh~~  241 (333)
                      ...+|||||||+|..+..+++.  ..+++++|. +.+++.+++.     .+                  +    .+||++
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l  197 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL  197 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence            4569999999999999999885  478999999 7777765431     00                  1    578888


Q ss_pred             ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEe
Q 035738          242 NDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCE  320 (333)
Q Consensus       242 ~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~  320 (333)
                      +++....+++++.++|+|||++++++....+....+                .+-...++.+|++++++.  |++++..
T Consensus       198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~----------------~p~~~~~~~~el~~~~~~--~~i~~~~  258 (287)
T PRK12335        198 NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP----------------MPFSFTFKEGELKDYYQD--WEIVKYN  258 (287)
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC----------------CCCCcccCHHHHHHHhCC--CEEEEEe
Confidence            877888999999999999999888776543321100                011223568899999954  8887764

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.03  E-value=1.7e-09  Score=104.60  Aligned_cols=123  Identities=16%  Similarity=0.187  Sum_probs=89.1

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CC-------------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PC-------------------  234 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~g-------------------  234 (333)
                      ..+++.++ ..+..+|||||||+|.++..+++.+.  +++++|+ +.+++.++..    ++                   
T Consensus        27 ~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~  103 (475)
T PLN02336         27 PEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGS  103 (475)
T ss_pred             hHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCC
Confidence            45555555 44567999999999999999998754  7899999 7887654311    11                   


Q ss_pred             --e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHH
Q 035738          235 --M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTL  308 (333)
Q Consensus       235 --v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~l  308 (333)
                        +    .++|++++++..++|+++++.|+|||++++.|.+.......   .   .      .  ......++..+|.++
T Consensus       104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~---~---~------~--~~~~~~~~~~~~~~~  169 (475)
T PLN02336        104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS---K---R------K--NNPTHYREPRFYTKV  169 (475)
T ss_pred             EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc---c---c------c--CCCCeecChHHHHHH
Confidence              0    67788888878899999999999999999999865432110   0   0      0  011223568899999


Q ss_pred             HHhCCCCeeE
Q 035738          309 ATGAGFSGIS  318 (333)
Q Consensus       309 l~~aGf~~~~  318 (333)
                      +.++||....
T Consensus       170 f~~~~~~~~~  179 (475)
T PLN02336        170 FKECHTRDED  179 (475)
T ss_pred             HHHheeccCC
Confidence            9999997663

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.03  E-value=8.2e-11  Score=95.91  Aligned_cols=118  Identities=25%  Similarity=0.317  Sum_probs=78.4

Q ss_pred             CCCeEEEEcCCccHHHHHHH-HHCCCCeEEEeec-hhHhhhCCCC------CCe------------------------EE
Q 035738          190 NIKQLVDVGGGIGVTLQAIT-TKYPYIKGINFDL-PHVIEHVPPH------PCM------------------------WI  237 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~------~gv------------------------~v  237 (333)
                      +..+|||+|||+|.++..++ +.+|+.+++++|+ +.+++.+++.      +++                        .+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~   82 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV   82 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence            56799999999999999999 5688999999999 8899887651      111                        33


Q ss_pred             EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCC
Q 035738          238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAG  313 (333)
Q Consensus       238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aG  313 (333)
                      +|++++..  .+|+++.+.|+|+|.+++.+......-................+  ...+.  +.++|..+|++||
T Consensus        83 l~~~~~~~--~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~ag  152 (152)
T PF13847_consen   83 LHHFPDPE--KVLKNIIRLLKPGGILIISDPNHNDELPEQLEELMNLYSEVWSM--IYIGN--DKEEWKYILEEAG  152 (152)
T ss_dssp             GGGTSHHH--HHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHHHHHH--CC-----CCCGHHHHHHHTT
T ss_pred             hhhccCHH--HHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHHHHHHHHHhhh--hhccc--CHHHHHHHHHhcC
Confidence            45666664  89999999999999999999973221000000000000111111  11122  6789999999998

...

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.02  E-value=3.2e-09  Score=92.84  Aligned_cols=117  Identities=15%  Similarity=0.206  Sum_probs=83.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--CC-------------------e----EEEccCCh
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--PC-------------------M----WILHDWND  243 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~g-------------------v----~vLh~~~~  243 (333)
                      ...+|||||||+|.++..+++.+|..+++++|+ +.+++.+++.  ++                   +    .++|+..+
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~  113 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD  113 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence            457899999999999999999999999999999 7777555432  01                   1    55666655


Q ss_pred             hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEee
Q 035738          244 EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCER  321 (333)
Q Consensus       244 ~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~  321 (333)
                      ..  ++|++++++|+|||.+++.++.....         ..+....  .. ......+.++|.++++++ |..+.+..
T Consensus       114 ~~--~~l~~~~~~L~~~G~l~~~~~~~~~~---------~~~~~~~--~~-~~~~~~~~~~~~~~l~~~-f~~~~~~~  176 (240)
T TIGR02072       114 LS--QALSELARVLKPGGLLAFSTFGPGTL---------HELRQSF--GQ-HGLRYLSLDELKALLKNS-FELLTLEE  176 (240)
T ss_pred             HH--HHHHHHHHHcCCCcEEEEEeCCccCH---------HHHHHHH--HH-hccCCCCHHHHHHHHHHh-cCCcEEEE
Confidence            44  89999999999999999987643221         0011111  10 134566889999999998 88766543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.02  E-value=3.9e-09  Score=93.23  Aligned_cols=111  Identities=18%  Similarity=0.181  Sum_probs=83.2

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CCe--------------EEEccCChhHHHHHH
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PCM--------------WILHDWNDEHCLKLL  250 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~gv--------------~vLh~~~~~~~~~lL  250 (333)
                      .+..+|||||||+|.++..+++..+ .+++++|+ |.+++.++++   .++              .|+.+...+....++
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~~~~~l~  196 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILANPLLELA  196 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcHHHHHHHH
Confidence            4678999999999999887766544 37999999 8888877653   111              344444444556899


Q ss_pred             HHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecCCceeEE
Q 035738          251 KNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVM  329 (333)
Q Consensus       251 ~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi  329 (333)
                      +++.+.|+|||++++......                             ..+++.+.+++.||+++++...+.+..++
T Consensus       197 ~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~  246 (250)
T PRK00517        197 PDLARLLKPGGRLILSGILEE-----------------------------QADEVLEAYEEAGFTLDEVLERGEWVALV  246 (250)
T ss_pred             HHHHHhcCCCcEEEEEECcHh-----------------------------hHHHHHHHHHHCCCEEEEEEEeCCEEEEE
Confidence            999999999999998754211                             25678899999999999988887776654

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.97  E-value=7.3e-09  Score=92.08  Aligned_cols=81  Identities=15%  Similarity=0.197  Sum_probs=65.3

Q ss_pred             CCCCCeEEEEcCCccH----HHHHHHHHCC-----CCeEEEeec-hhHhhhCCCC----------C--------------
Q 035738          188 FDNIKQLVDVGGGIGV----TLQAITTKYP-----YIKGINFDL-PHVIEHVPPH----------P--------------  233 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~----------~--------------  233 (333)
                      .....+|+|+|||||.    +++.+++.++     +.++++.|+ +.+++.|++.          |              
T Consensus        97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~  176 (264)
T smart00138       97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK  176 (264)
T ss_pred             CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence            3456899999999996    5666666655     578999999 8899877651          0              


Q ss_pred             ---------Ce-----------------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          234 ---------CM-----------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       234 ---------gv-----------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                               .|                       ++||+++++...+++++++++|+|||++++-..
T Consensus       177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~  243 (264)
T smart00138      177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS  243 (264)
T ss_pred             EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence                     01                       889999988888999999999999999998654

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.96  E-value=4.1e-09  Score=92.97  Aligned_cols=134  Identities=16%  Similarity=0.174  Sum_probs=90.0

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhC------C--CC-----C-Ce-------
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHV------P--PH-----P-CM-------  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a------~--~~-----~-gv-------  235 (333)
                      +..+...++.+ .+++|||||||+|.++.+++.+.+. .++++|- +....+.      .  ..     | ++       
T Consensus       104 W~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~  181 (315)
T PF08003_consen  104 WDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG  181 (315)
T ss_pred             HHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence            34455555423 5679999999999999999998775 5888886 4332221      1  00     1 11       


Q ss_pred             --------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCC-CCcCCHHHHH
Q 035738          236 --------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPG-GKERTRHEFM  306 (333)
Q Consensus       236 --------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~-g~~rt~~e~~  306 (333)
                              -||++..++-  ..|+++++.|+|||.+++-..+.+.+........    -....|   .| -..+|...+.
T Consensus       182 ~FDtVF~MGVLYHrr~Pl--~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~----~rYa~m---~nv~FiPs~~~L~  252 (315)
T PF08003_consen  182 AFDTVFSMGVLYHRRSPL--DHLKQLKDSLRPGGELVLETLVIDGDENTVLVPE----DRYAKM---RNVWFIPSVAALK  252 (315)
T ss_pred             CcCEEEEeeehhccCCHH--HHHHHHHHhhCCCCEEEEEEeeecCCCceEEccC----CcccCC---CceEEeCCHHHHH
Confidence                    6777777664  8999999999999998887777765432211000    000111   12 2356899999


Q ss_pred             HHHHhCCCCeeEEeec
Q 035738          307 TLATGAGFSGISCERA  322 (333)
Q Consensus       307 ~ll~~aGf~~~~~~~~  322 (333)
                      .||+++||+.+++...
T Consensus       253 ~wl~r~gF~~v~~v~~  268 (315)
T PF08003_consen  253 NWLERAGFKDVRCVDV  268 (315)
T ss_pred             HHHHHcCCceEEEecC
Confidence            9999999999998765

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.94  E-value=7e-09  Score=81.03  Aligned_cols=85  Identities=12%  Similarity=0.224  Sum_probs=63.9

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe------------------
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM------------------  235 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv------------------  235 (333)
                      +++.+. .....+|||+|||+|.++..+++++|..+++++|. +.+++.++++      .++                  
T Consensus        11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (124)
T TIGR02469        11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP   89 (124)
T ss_pred             HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence            444444 55567999999999999999999999999999999 7777765432      111                  


Q ss_pred             -EEEccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 035738          236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAV  266 (333)
Q Consensus       236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~  266 (333)
                       .++.........++++++++.|+|||++++.
T Consensus        90 D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        90 DRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             CEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence             3333333344568999999999999998874

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.94  E-value=2.1e-09  Score=92.19  Aligned_cols=122  Identities=15%  Similarity=0.203  Sum_probs=88.1

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----C----C----e--------------------EE
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----P----C----M--------------------WI  237 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~----g----v--------------------~v  237 (333)
                      +.+|||||||+|.++..|++..  .+++++|+ +.+++.|++.    |    +    +                    .+
T Consensus        90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev  167 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV  167 (282)
T ss_pred             CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence            4789999999999999999987  56899999 8899988764    1    1    0                    67


Q ss_pred             EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccch-hhHHHhhCCCC-----CcCCHHHHHHHHHh
Q 035738          238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDS-DVLMMIQSPGG-----KERTRHEFMTLATG  311 (333)
Q Consensus       238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~-d~~m~~~~~~g-----~~rt~~e~~~ll~~  311 (333)
                      |++..|++  .+++.+.+.|+|+|+++|......-....     ...++ +.... ..|.|     +..++++...+++.
T Consensus       168 leHV~dp~--~~l~~l~~~lkP~G~lfittinrt~lS~~-----~~i~~~E~vl~-ivp~Gth~~ekfi~p~e~~~~l~~  239 (282)
T KOG1270|consen  168 LEHVKDPQ--EFLNCLSALLKPNGRLFITTINRTILSFA-----GTIFLAEIVLR-IVPKGTHTWEKFINPEELTSILNA  239 (282)
T ss_pred             HHHHhCHH--HHHHHHHHHhCCCCceEeeehhhhHHHhh-----ccccHHHHHHH-hcCCCCcCHHHcCCHHHHHHHHHh
Confidence            77777665  89999999999999999988754321100     01111 22222 12333     45689999999999


Q ss_pred             CCCCeeEEeec
Q 035738          312 AGFSGISCERA  322 (333)
Q Consensus       312 aGf~~~~~~~~  322 (333)
                      +++++..+.-.
T Consensus       240 ~~~~v~~v~G~  250 (282)
T KOG1270|consen  240 NGAQVNDVVGE  250 (282)
T ss_pred             cCcchhhhhcc
Confidence            99987776543

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.93  E-value=1.7e-08  Score=84.57  Aligned_cols=113  Identities=15%  Similarity=0.171  Sum_probs=83.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CCe----------------EEEcc-----CC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PCM----------------WILHD-----WN  242 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~gv----------------~vLh~-----~~  242 (333)
                      +..+|||+|||+|.++..+.+..+  +++++|+ |.+++.++++     ..+                .|+.+     .+
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~   96 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE   96 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence            457899999999999999999876  8999999 8888776542     011                22211     11


Q ss_pred             hh-------------------HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHH
Q 035738          243 DE-------------------HCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRH  303 (333)
Q Consensus       243 ~~-------------------~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~  303 (333)
                      ++                   ...++|+++.+.|+|||++++++....                             ...
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------------~~~  147 (179)
T TIGR00537        97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------------------------GEP  147 (179)
T ss_pred             chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------------ChH
Confidence            10                   134789999999999999999875321                             146


Q ss_pred             HHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738          304 EFMTLATGAGFSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       304 e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  333 (333)
                      ++.+++++.||....+...+.++--+.++|
T Consensus       148 ~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~  177 (179)
T TIGR00537       148 DTFDKLDERGFRYEIVAERGLFFEELFAIK  177 (179)
T ss_pred             HHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence            778999999999888888887777666664

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.92  E-value=6.1e-10  Score=82.58  Aligned_cols=68  Identities=18%  Similarity=0.346  Sum_probs=55.0

Q ss_pred             EEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC--------------------e---EEEccCChhHHH
Q 035738          195 VDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC--------------------M---WILHDWNDEHCL  247 (333)
Q Consensus       195 lDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g--------------------v---~vLh~~~~~~~~  247 (333)
                      ||+|||+|..+..+.++ +..+++++|. +.+++.+++.   .+                    |   .++|+++  +..
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~--~~~   77 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE--DPE   77 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS--HHH
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc--CHH
Confidence            79999999999999999 8899999999 7777776542   11                    0   6667774  445


Q ss_pred             HHHHHHHHhCCCCcEEEE
Q 035738          248 KLLKNCYKSIPEDGKVIA  265 (333)
Q Consensus       248 ~lL~~~~~~L~pgG~l~i  265 (333)
                      +++++++++|||||+++|
T Consensus        78 ~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   78 AALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHcCcCeEEeC
Confidence            999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases

Probab=98.90  E-value=1.4e-09  Score=70.23  Aligned_cols=51  Identities=59%  Similarity=0.835  Sum_probs=43.0

Q ss_pred             HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHh
Q 035738           27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLA   78 (333)
Q Consensus        27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~   78 (333)
                      ++|++|++|||||.|+++| +++.|++||+.++..++|.++..++|+||+|+
T Consensus         1 MaLk~aveLgI~dii~~~g-~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~   51 (51)
T PF08100_consen    1 MALKCAVELGIPDIIHNAG-GGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV   51 (51)
T ss_dssp             HHHHHHHHTTHHHHHHHHT-TS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred             CcHHHHHHcCcHHHHHHcC-CCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence            5899999999999999986 46999999999999445557788999999985

It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.89  E-value=1.1e-08  Score=89.14  Aligned_cols=123  Identities=14%  Similarity=0.135  Sum_probs=80.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----C--Ce--------------------EEEc
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----P--CM--------------------WILH  239 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~--gv--------------------~vLh  239 (333)
                      ..+..+|||||||+|.++..+++..+  +++++|+ +.+++.+++.     .  .+                    .++|
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~  138 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLI  138 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhh
Confidence            34567999999999999999988754  5999999 7887766542     0  11                    5567


Q ss_pred             cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHh-----hCCCCCcCCHHHHHHHHHhCCC
Q 035738          240 DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMI-----QSPGGKERTRHEFMTLATGAGF  314 (333)
Q Consensus       240 ~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~-----~~~~g~~rt~~e~~~ll~~aGf  314 (333)
                      +++++....+++++.+.+++++ ++....   ..+.       ..........     ........+.++|.++++++||
T Consensus       139 ~~~~~~~~~~l~~l~~~~~~~~-~i~~~~---~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  207 (230)
T PRK07580        139 HYPQEDAARMLAHLASLTRGSL-IFTFAP---YTPL-------LALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGF  207 (230)
T ss_pred             cCCHHHHHHHHHHHHhhcCCeE-EEEECC---ccHH-------HHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCC
Confidence            7888888899999998765443 333221   1100       0001100000     0012334578999999999999


Q ss_pred             CeeEEeecC
Q 035738          315 SGISCERAI  323 (333)
Q Consensus       315 ~~~~~~~~~  323 (333)
                      ++.++.+..
T Consensus       208 ~~~~~~~~~  216 (230)
T PRK07580        208 KVVRTERIS  216 (230)
T ss_pred             ceEeeeecc
Confidence            999988765

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.89  E-value=1.7e-08  Score=93.47  Aligned_cols=87  Identities=18%  Similarity=0.264  Sum_probs=66.4

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----C----Ce--------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----P----CM--------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~----gv--------------  235 (333)
                      -+++.++ .....+|||+|||+|..+..+++++|..+++++|. +.+++.++++     +    .+              
T Consensus       219 llL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~  297 (378)
T PRK15001        219 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF  297 (378)
T ss_pred             HHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence            4555565 33446999999999999999999999999999999 6787776532     1    11              


Q ss_pred             ---EEEc--------cCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738          236 ---WILH--------DWNDEHCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       236 ---~vLh--------~~~~~~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                         .|+.        ..++..+.++++.+++.|+|||.++++-
T Consensus       298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence               2222        2344556789999999999999999984

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.89  E-value=8.2e-09  Score=88.18  Aligned_cols=83  Identities=17%  Similarity=0.361  Sum_probs=68.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CCe----------------------EEEccCCh
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PCM----------------------WILHDWND  243 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~gv----------------------~vLh~~~~  243 (333)
                      ..+..+|||||||+|..+..+++..|..+++++|+ +.+++.|++. +++                      .+||++++
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p  120 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP  120 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence            34677899999999999999999889999999999 8899988753 211                      67888887


Q ss_pred             hHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738          244 EHCLKLLKNCYKSIPEDGKVIAVELMLPE  272 (333)
Q Consensus       244 ~~~~~lL~~~~~~L~pgG~l~i~e~~~~~  272 (333)
                      +...++++++++++  ++.++|.|...+.
T Consensus       121 ~~~~~~l~el~r~~--~~~v~i~e~~~~~  147 (204)
T TIGR03587       121 DNLPTAYRELYRCS--NRYILIAEYYNPS  147 (204)
T ss_pred             HHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence            77889999999987  5688888886554

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.88  E-value=2.9e-09  Score=89.74  Aligned_cols=119  Identities=19%  Similarity=0.286  Sum_probs=86.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CCe------------------------EEEc
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PCM------------------------WILH  239 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~gv------------------------~vLh  239 (333)
                      +..+.||.|+|.|..+..++...- -++-.+|. +..++.|+++     +.+                        +++-
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg  133 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG  133 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred             CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence            568999999999999998765442 24666676 7788877632     111                        8899


Q ss_pred             cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEE
Q 035738          240 DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISC  319 (333)
Q Consensus       240 ~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~  319 (333)
                      +++|++.++.|++|+++|+|+|.|+|-|.+...+.         ..+|-.     -+.-.|+.+.|+++|++||+++++.
T Consensus       134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~~-----DsSvTRs~~~~~~lF~~AGl~~v~~  199 (218)
T PF05891_consen  134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDEE-----DSSVTRSDEHFRELFKQAGLRLVKE  199 (218)
T ss_dssp             GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEETT-----TTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred             cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCCc-----cCeeecCHHHHHHHHHHcCCEEEEe
Confidence            99999999999999999999999999999876531         112211     2445689999999999999999987


Q ss_pred             eecC
Q 035738          320 ERAI  323 (333)
Q Consensus       320 ~~~~  323 (333)
                      ..-.
T Consensus       200 ~~Q~  203 (218)
T PF05891_consen  200 EKQK  203 (218)
T ss_dssp             EE-T
T ss_pred             cccc
Confidence            6543

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.88  E-value=9.8e-09  Score=84.86  Aligned_cols=156  Identities=20%  Similarity=0.188  Sum_probs=94.4

Q ss_pred             HHHHHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC-
Q 035738          163 NKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC-  234 (333)
Q Consensus       163 ~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g-  234 (333)
                      ...|+..|..+.......+-. +-+.+....||+||||||..-.. ..--|..++|.+|. |.+-+.+.+.      +. 
T Consensus        50 t~~yne~~~~ykrelFs~i~~-~~gk~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~  127 (252)
T KOG4300|consen   50 TSIYNEIADSYKRELFSGIYY-FLGKSGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQV  127 (252)
T ss_pred             HHHHHHHHHHHHHHHHhhhHH-HhcccCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcce
Confidence            445667676665443333322 22244556789999999986441 12235677899998 7776554321      11 


Q ss_pred             -------------e-----------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHH
Q 035738          235 -------------M-----------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLM  290 (333)
Q Consensus       235 -------------v-----------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m  290 (333)
                                   +           .+|+  +-++.++.|+++++.|+|||+++++|....+...-  ...+....+-..
T Consensus       128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLC--Sve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~--n~i~q~v~ep~~  203 (252)
T KOG4300|consen  128 ERFVVADGENLPQLADGSYDTVVCTLVLC--SVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFW--NRILQQVAEPLW  203 (252)
T ss_pred             EEEEeechhcCcccccCCeeeEEEEEEEe--ccCCHHHHHHHHHHhcCCCcEEEEEecccccchHH--HHHHHHHhchhh
Confidence                         0           4555  44455699999999999999999999987654211  011111112111


Q ss_pred             HhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecCCce
Q 035738          291 MIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNL  326 (333)
Q Consensus       291 ~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~  326 (333)
                      .. ...|-..|++.|+ .|++|-|+..+......+.
T Consensus       204 ~~-~~dGC~ltrd~~e-~Leda~f~~~~~kr~~~~t  237 (252)
T KOG4300|consen  204 HL-ESDGCVLTRDTGE-LLEDAEFSIDSCKRFNFGT  237 (252)
T ss_pred             he-eccceEEehhHHH-HhhhcccccchhhcccCCc
Confidence            11 1356666776665 5588999998887766443

>PTZ00146 fibrillarin; Provisional

Probab=98.87  E-value=9.4e-08  Score=84.90  Aligned_cols=116  Identities=11%  Similarity=0.033  Sum_probs=76.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hh----HhhhCCCCCCe---------------------EEEcc
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PH----VIEHVPPHPCM---------------------WILHD  240 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~gv---------------------~vLh~  240 (333)
                      +.+..+|||+|||+|.++..+++.. +.-+++.+|+ +.    +++.++..+++                     .|+++
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D  209 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD  209 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence            5677899999999999999999876 4568999998 53    45555432221                     66666


Q ss_pred             CChhH-HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEE
Q 035738          241 WNDEH-CLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISC  319 (333)
Q Consensus       241 ~~~~~-~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~  319 (333)
                      ..+++ ...++.++.+.|||||+++|.......              +..     +.-.++-.+|. ++|+++||+.+++
T Consensus       210 va~pdq~~il~~na~r~LKpGG~~vI~ika~~i--------------d~g-----~~pe~~f~~ev-~~L~~~GF~~~e~  269 (293)
T PTZ00146        210 VAQPDQARIVALNAQYFLKNGGHFIISIKANCI--------------DST-----AKPEVVFASEV-QKLKKEGLKPKEQ  269 (293)
T ss_pred             CCCcchHHHHHHHHHHhccCCCEEEEEEecccc--------------ccC-----CCHHHHHHHHH-HHHHHcCCceEEE
Confidence            55443 335566899999999999993221110              100     00011112344 8899999999988


Q ss_pred             eecC
Q 035738          320 ERAI  323 (333)
Q Consensus       320 ~~~~  323 (333)
                      +...
T Consensus       270 v~L~  273 (293)
T PTZ00146        270 LTLE  273 (293)
T ss_pred             EecC
Confidence            8765

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.85  E-value=8.4e-09  Score=87.56  Aligned_cols=79  Identities=11%  Similarity=0.176  Sum_probs=61.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe---------------------EEEccC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM---------------------WILHDW  241 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv---------------------~vLh~~  241 (333)
                      ...++||||||+|.++..+++++|+.+++++|+ +.+++.+++.      .++                     .++.++
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            456899999999999999999999999999999 7787766431      111                     444555


Q ss_pred             ChhH-----------HHHHHHHHHHhCCCCcEEEEEee
Q 035738          242 NDEH-----------CLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       242 ~~~~-----------~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      +++.           ...++++++++|+|||.|++...
T Consensus        96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td  133 (194)
T TIGR00091        96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD  133 (194)
T ss_pred             CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence            4431           13699999999999999988654

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.84  E-value=1.4e-08  Score=88.83  Aligned_cols=128  Identities=17%  Similarity=0.113  Sum_probs=79.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------------------C-------Ce----EE
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------------------P-------CM----WI  237 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~-------gv----~v  237 (333)
                      ..+..+|||||||+|.++..+.+.  ..+++++|+ +..++.++++                  +       ++    .+
T Consensus        46 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~  123 (233)
T PRK05134         46 GLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM  123 (233)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence            345779999999999999888875  467899998 6776655421                  0       01    33


Q ss_pred             EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhh-C-CCCCcCCHHHHHHHHHhCCCC
Q 035738          238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQ-S-PGGKERTRHEFMTLATGAGFS  315 (333)
Q Consensus       238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~-~-~~g~~rt~~e~~~ll~~aGf~  315 (333)
                      +++.++..  .+|+.+.+.|+|||++++.......  ............-...... + ......+.++|.++|+++||+
T Consensus       124 l~~~~~~~--~~l~~~~~~L~~gG~l~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  199 (233)
T PRK05134        124 LEHVPDPA--SFVRACAKLVKPGGLVFFSTLNRNL--KSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLE  199 (233)
T ss_pred             hhccCCHH--HHHHHHHHHcCCCcEEEEEecCCCh--HHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCe
Confidence            45555544  7999999999999999887652110  0000000000000000000 0 012345789999999999999


Q ss_pred             eeEEee
Q 035738          316 GISCER  321 (333)
Q Consensus       316 ~~~~~~  321 (333)
                      +++...
T Consensus       200 ~v~~~~  205 (233)
T PRK05134        200 VQDITG  205 (233)
T ss_pred             Eeeeee
Confidence            887754

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.84  E-value=1.3e-09  Score=82.35  Aligned_cols=68  Identities=25%  Similarity=0.483  Sum_probs=54.8

Q ss_pred             EEEEcCCccHHHHHHHHHC---CCCeEEEeec-hhHhhhCCCC-----CCe------------------------EEEcc
Q 035738          194 LVDVGGGIGVTLQAITTKY---PYIKGINFDL-PHVIEHVPPH-----PCM------------------------WILHD  240 (333)
Q Consensus       194 vlDVGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-----~gv------------------------~vLh~  240 (333)
                      |||+|||+|..+..+++.+   |+.+++++|+ +.+++.++++     +.+                        .++|+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~   80 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH   80 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence            7999999999999999987   5689999999 8898877643     111                        23778


Q ss_pred             CChhHHHHHHHHHHHhCCCCc
Q 035738          241 WNDEHCLKLLKNCYKSIPEDG  261 (333)
Q Consensus       241 ~~~~~~~~lL~~~~~~L~pgG  261 (333)
                      +++++..++|+++++.|+|||
T Consensus        81 ~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   81 LSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             SSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999997

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.80  E-value=2.5e-08  Score=83.86  Aligned_cols=102  Identities=16%  Similarity=0.138  Sum_probs=74.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------EEEccCChhH
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------WILHDWNDEH  245 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------~vLh~~~~~~  245 (333)
                      ...+|||||||+|..+..++.+.|+.+++++|. +.+++.++++      .++                 .|+.+. -..
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~-~~~  123 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRA-VAS  123 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEcc-ccC
Confidence            478999999999999999999999999999999 8888777642      112                 222111 122


Q ss_pred             HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738          246 CLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       246 ~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  322 (333)
                      ...+++++++.|+|||++++++...                              ...++.++.+..|+.+.+++..
T Consensus       124 ~~~~l~~~~~~LkpGG~lv~~~~~~------------------------------~~~~l~~~~~~~~~~~~~~~~~  170 (187)
T PRK00107        124 LSDLVELCLPLLKPGGRFLALKGRD------------------------------PEEEIAELPKALGGKVEEVIEL  170 (187)
T ss_pred             HHHHHHHHHHhcCCCeEEEEEeCCC------------------------------hHHHHHHHHHhcCceEeeeEEE
Confidence            3589999999999999999885421                              1334566666678887776544

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.77  E-value=7.8e-08  Score=80.56  Aligned_cols=76  Identities=16%  Similarity=0.138  Sum_probs=56.4

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------EEEccCChhHH
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------WILHDWNDEHC  246 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------~vLh~~~~~~~  246 (333)
                      +.+|||||||+|..+..++..+|+.+++++|. +.+++.+++.      .++                 .|+.+. -...
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~  121 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL  121 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence            67999999999999999999999999999999 7776655421      122                 111111 1123


Q ss_pred             HHHHHHHHHhCCCCcEEEEEe
Q 035738          247 LKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       247 ~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      ..+++.+++.|+|||++++..
T Consensus       122 ~~~~~~~~~~LkpgG~lvi~~  142 (181)
T TIGR00138       122 NVLLELTLNLLKVGGYFLAYK  142 (181)
T ss_pred             HHHHHHHHHhcCCCCEEEEEc
Confidence            468899999999999999763

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PLN03075 nicotianamine synthase; Provisional

Probab=98.77  E-value=2.1e-08  Score=89.29  Aligned_cols=79  Identities=18%  Similarity=0.180  Sum_probs=62.3

Q ss_pred             CCCCeEEEEcCCccHHHH-HH-HHHCCCCeEEEeec-hhHhhhCCCC----CC----e----------------------
Q 035738          189 DNIKQLVDVGGGIGVTLQ-AI-TTKYPYIKGINFDL-PHVIEHVPPH----PC----M----------------------  235 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~-~l-~~~~p~~~~~~~D~-~~~~~~a~~~----~g----v----------------------  235 (333)
                      .++.+|+|||||.|-++. .+ ...+|+.+++++|. +.+++.|++.    ++    +                      
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~  201 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL  201 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence            378999999999774433 33 35689999999999 8888776642    11    1                      


Q ss_pred             EEEccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738          236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      .+||+|+.++-.++|+++++.|+|||.+++--
T Consensus       202 ~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        202 AALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             ecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            88899976666799999999999999988865

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.76  E-value=4.5e-08  Score=80.50  Aligned_cols=88  Identities=16%  Similarity=0.231  Sum_probs=68.5

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe--------EEEccCCh--
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM--------WILHDWND--  243 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv--------~vLh~~~~--  243 (333)
                      .++.+. ..+..+++|||||||..+.+++..+|+.+++.+|. +.+++..+++      +++        ..|.+.++  
T Consensus        26 ~ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d  104 (187)
T COG2242          26 TLSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD  104 (187)
T ss_pred             HHHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence            345565 77888999999999999999999999999999998 7787776654      343        44444431  


Q ss_pred             -------hHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          244 -------EHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       244 -------~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                             .....+|+.+...|+|||++++.-..
T Consensus       105 aiFIGGg~~i~~ile~~~~~l~~ggrlV~nait  137 (187)
T COG2242         105 AIFIGGGGNIEEILEAAWERLKPGGRLVANAIT  137 (187)
T ss_pred             EEEECCCCCHHHHHHHHHHHcCcCCeEEEEeec
Confidence                   22458999999999999998876553

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=2.8e-07  Score=81.58  Aligned_cols=89  Identities=18%  Similarity=0.225  Sum_probs=70.0

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC--e--------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC--M--------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g--v--------------  235 (333)
                      +-+++.++ .+...+|+|+|||.|-.+..+++.+|+.+++.+|. ...++.++++      .+  +              
T Consensus       148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd  226 (300)
T COG2813         148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD  226 (300)
T ss_pred             HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence            45667777 55455999999999999999999999999999999 6788888764      12  1              


Q ss_pred             EEEccCC--------hhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          236 WILHDWN--------DEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 ~vLh~~~--------~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      .|+.+-|        +.-+.++++.+.+.|++||.|.|+=.
T Consensus       227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             EEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            4444433        23345899999999999999988866

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.73  E-value=3.6e-08  Score=84.19  Aligned_cols=79  Identities=14%  Similarity=0.167  Sum_probs=59.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe---------------------EEEccC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM---------------------WILHDW  241 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv---------------------~vLh~~  241 (333)
                      ...+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++.      +++                     .++..+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~  119 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF  119 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence            567999999999999999999999999999999 8888766531      121                     232222


Q ss_pred             Chh-----------HHHHHHHHHHHhCCCCcEEEEEee
Q 035738          242 NDE-----------HCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       242 ~~~-----------~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      +++           ....+|+++.++|+|||.+++...
T Consensus       120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~  157 (202)
T PRK00121        120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD  157 (202)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence            221           124789999999999999998754

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.73  E-value=2.8e-08  Score=90.16  Aligned_cols=119  Identities=12%  Similarity=0.057  Sum_probs=75.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---C------------------------Ce----EE
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---P------------------------CM----WI  237 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~------------------------gv----~v  237 (333)
                      +..+|||||||+|.++..+++.  +.+++++|+ +.+++.++++   .                        ++    .+
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v  221 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV  221 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence            4579999999999999999986  468999999 7887665432   0                        00    56


Q ss_pred             EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCC------CCcCCHHHHHHHHHh
Q 035738          238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPG------GKERTRHEFMTLATG  311 (333)
Q Consensus       238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~------g~~rt~~e~~~ll~~  311 (333)
                      ||+++++....+++.+.+ +.+++. +|..  .+...    .   ...+... ....++      ....+.++++++|++
T Consensus       222 L~H~p~~~~~~ll~~l~~-l~~g~l-iIs~--~p~~~----~---~~~l~~~-g~~~~g~~~~~r~y~~s~eel~~lL~~  289 (315)
T PLN02585        222 LIHYPQDKADGMIAHLAS-LAEKRL-IISF--APKTL----Y---YDILKRI-GELFPGPSKATRAYLHAEADVERALKK  289 (315)
T ss_pred             EEecCHHHHHHHHHHHHh-hcCCEE-EEEe--CCcch----H---HHHHHHH-HhhcCCCCcCceeeeCCHHHHHHHHHH
Confidence            777888777788888875 455444 4422  12110    0   0000000 000111      113378999999999


Q ss_pred             CCCCeeEEeec
Q 035738          312 AGFSGISCERA  322 (333)
Q Consensus       312 aGf~~~~~~~~  322 (333)
                      +||++.+..-.
T Consensus       290 AGf~v~~~~~~  300 (315)
T PLN02585        290 AGWKVARREMT  300 (315)
T ss_pred             CCCEEEEEEEe
Confidence            99998766544

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.73  E-value=4.6e-08  Score=83.16  Aligned_cols=86  Identities=13%  Similarity=0.237  Sum_probs=65.0

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe------------------
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM------------------  235 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv------------------  235 (333)
                      +++.++ .....+|||+|||+|.++..+++..|..+++++|+ |.+++.++++      .++                  
T Consensus        32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~  110 (196)
T PRK07402         32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP  110 (196)
T ss_pred             HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence            344444 56778999999999999999998899999999999 8888776542      122                  


Q ss_pred             -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                       .+.++. ......+++++.+.|+|||++++...
T Consensus       111 d~v~~~~-~~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        111 DRVCIEG-GRPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             CEEEEEC-CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence             111111 12345899999999999999998875

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.72  E-value=2e-07  Score=80.08  Aligned_cols=109  Identities=12%  Similarity=0.058  Sum_probs=77.8

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC------------------CCC---------------
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP------------------HPC---------------  234 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~g---------------  234 (333)
                      ....+|||+|||.|..+..|+++  ..+++++|+ |.+++.+.+                  ..+               
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            45679999999999999999875  567999999 777775310                  000               


Q ss_pred             ------e---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCC--CcCCHH
Q 035738          235 ------M---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGG--KERTRH  303 (333)
Q Consensus       235 ------v---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g--~~rt~~  303 (333)
                            +   .++|.++++...+.++++.++|+|||++++.-...+....                    +|  ...+.+
T Consensus       111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~--------------------~gpp~~~~~~  170 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM--------------------AGPPFSVSPA  170 (213)
T ss_pred             CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC--------------------CCcCCCCCHH
Confidence                  1   4567788888889999999999999998887765432110                    11  135788


Q ss_pred             HHHHHHHhCCCCeeEEe
Q 035738          304 EFMTLATGAGFSGISCE  320 (333)
Q Consensus       304 e~~~ll~~aGf~~~~~~  320 (333)
                      ++.++|.. +|.+..+.
T Consensus       171 eL~~~f~~-~~~i~~~~  186 (213)
T TIGR03840       171 EVEALYGG-HYEIELLE  186 (213)
T ss_pred             HHHHHhcC-CceEEEEe
Confidence            99998864 45555443

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.69  E-value=3.7e-08  Score=85.45  Aligned_cols=122  Identities=16%  Similarity=0.116  Sum_probs=78.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----C-Ce------------------------EEE
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----P-CM------------------------WIL  238 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~-gv------------------------~vL  238 (333)
                      ...+|||+|||+|.++..+++..+  +++++|+ +.+++.+++.     . .+                        .++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l  122 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL  122 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence            467999999999999998887654  5889998 6666554321     0 01                        334


Q ss_pred             ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHH-hhCCC-----CCcCCHHHHHHHHHhC
Q 035738          239 HDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMM-IQSPG-----GKERTRHEFMTLATGA  312 (333)
Q Consensus       239 h~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~-~~~~~-----g~~rt~~e~~~ll~~a  312 (333)
                      |+..+..  .+|+++++.|+|||.+++........   .   .........+. ...+.     ....+.++|.++++++
T Consensus       123 ~~~~~~~--~~l~~~~~~L~~gG~l~i~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  194 (224)
T TIGR01983       123 EHVPDPQ--AFIRACAQLLKPGGILFFSTINRTPK---S---YLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA  194 (224)
T ss_pred             HhCCCHH--HHHHHHHHhcCCCcEEEEEecCCCch---H---HHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence            5555554  79999999999999998876532110   0   00000000000 00011     1244788999999999


Q ss_pred             CCCeeEEee
Q 035738          313 GFSGISCER  321 (333)
Q Consensus       313 Gf~~~~~~~  321 (333)
                      ||+++++..
T Consensus       195 G~~i~~~~~  203 (224)
T TIGR01983       195 GLRVKDVKG  203 (224)
T ss_pred             CCeeeeeee
Confidence            999988754

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.69  E-value=8e-08  Score=88.80  Aligned_cols=88  Identities=18%  Similarity=0.199  Sum_probs=64.7

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------  235 (333)
                      .+++.+. ......+||||||+|.++..+++++|+..++++|+ +.+++.+.+.      .++                 
T Consensus       113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~  191 (390)
T PRK14121        113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN  191 (390)
T ss_pred             HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence            3444444 33456899999999999999999999999999999 7776655431      122                 


Q ss_pred             ---EEEccCChhH---------HHHHHHHHHHhCCCCcEEEEEee
Q 035738          236 ---WILHDWNDEH---------CLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 ---~vLh~~~~~~---------~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                         .|..+++++.         ...+|+.++++|+|||.+.+..-
T Consensus       192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD  236 (390)
T PRK14121        192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD  236 (390)
T ss_pred             ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence               3333455441         14789999999999999888654

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.66  E-value=2.8e-07  Score=78.45  Aligned_cols=82  Identities=13%  Similarity=0.201  Sum_probs=60.5

Q ss_pred             hhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC-------CCe------------------
Q 035738          183 ESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH-------PCM------------------  235 (333)
Q Consensus       183 ~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~gv------------------  235 (333)
                      ..+. .....+|||+|||+|.++..+++.. +..+++++|+ +.+++.++++       .++                  
T Consensus        34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~  112 (198)
T PRK00377         34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF  112 (198)
T ss_pred             HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence            3344 6677899999999999999998764 6689999999 8888866432       111                  


Q ss_pred             -EEEccCChhHHHHHHHHHHHhCCCCcEEEE
Q 035738          236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIA  265 (333)
Q Consensus       236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i  265 (333)
                       .++..........+|+.+.+.|+|||++++
T Consensus       113 D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~  143 (198)
T PRK00377        113 DRIFIGGGSEKLKEIISASWEIIKKGGRIVI  143 (198)
T ss_pred             CEEEECCCcccHHHHHHHHHHHcCCCcEEEE
Confidence             223222333446899999999999999876

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.65  E-value=2.8e-07  Score=77.60  Aligned_cols=141  Identities=13%  Similarity=0.220  Sum_probs=92.8

Q ss_pred             HHHHHHHHhhhhhhhHH----HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCCC---
Q 035738          163 NKHFNTVMYNYTSLVMS----NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHPC---  234 (333)
Q Consensus       163 ~~~f~~~m~~~~~~~~~----~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~g---  234 (333)
                      .+.|.+..-..-.+..+    +.+...+ ...+.++||+|||||.++..+...-..  .+++|+ ..|++.|.+...   
T Consensus        95 Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~--ltGvDiS~nMl~kA~eKg~YD~  171 (287)
T COG4976          95 AERFDHILVDKLGYSVPELLAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADR--LTGVDISENMLAKAHEKGLYDT  171 (287)
T ss_pred             HHHHHHHHHHHhcCccHHHHHHHHHhcc-CCccceeeecccCcCcccHhHHHHHhh--ccCCchhHHHHHHHHhccchHH
Confidence            44555544433333333    3333333 445899999999999999988776644  677899 789998876310   


Q ss_pred             -------------------e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHH
Q 035738          235 -------------------M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMM  291 (333)
Q Consensus       235 -------------------v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~  291 (333)
                                         +    .||-++.+-+  .++--+...|+|||.+.+.-...++...            +...
T Consensus       172 L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le--~~~~~aa~~L~~gGlfaFSvE~l~~~~~------------f~l~  237 (287)
T COG4976         172 LYVAEAVLFLEDLTQERFDLIVAADVLPYLGALE--GLFAGAAGLLAPGGLFAFSVETLPDDGG------------FVLG  237 (287)
T ss_pred             HHHHHHHHHhhhccCCcccchhhhhHHHhhcchh--hHHHHHHHhcCCCceEEEEecccCCCCC------------eecc
Confidence                               0    5555555443  7889999999999999888776665321            1111


Q ss_pred             hhCCCCC-cCCHHHHHHHHHhCCCCeeEEeecC
Q 035738          292 IQSPGGK-ERTRHEFMTLATGAGFSGISCERAI  323 (333)
Q Consensus       292 ~~~~~g~-~rt~~e~~~ll~~aGf~~~~~~~~~  323 (333)
                         +..+ -.+..-.+++++..||.++.+.+++
T Consensus       238 ---ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt  267 (287)
T COG4976         238 ---PSQRYAHSESYVRALLAASGLEVIAIEDTT  267 (287)
T ss_pred             ---hhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence               1111 1235567899999999999987653

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.64  E-value=2.2e-07  Score=83.76  Aligned_cols=78  Identities=21%  Similarity=0.245  Sum_probs=57.8

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC----e----------------EEEccCChhH
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC----M----------------WILHDWNDEH  245 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g----v----------------~vLh~~~~~~  245 (333)
                      +..+|||||||+|.++..+++. +..+++++|+ |.+++.++++   .+    +                .|+.+...+.
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~  237 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEV  237 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHH
Confidence            4589999999999999887764 4458999999 7888877653   11    1                2222233334


Q ss_pred             HHHHHHHHHHhCCCCcEEEEEee
Q 035738          246 CLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       246 ~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      ...+++++.+.|+|||++++...
T Consensus       238 l~~ll~~~~~~LkpgG~li~sgi  260 (288)
T TIGR00406       238 IKELYPQFSRLVKPGGWLILSGI  260 (288)
T ss_pred             HHHHHHHHHHHcCCCcEEEEEeC
Confidence            56899999999999999988765

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.64  E-value=1e-07  Score=87.66  Aligned_cols=87  Identities=20%  Similarity=0.292  Sum_probs=65.0

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C------Ce---------EE-
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P------CM---------WI-  237 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~------gv---------~v-  237 (333)
                      +++.++ .....+|||+|||+|.++..+++++|+.+++++|+ +.+++.++++      .      ++         .| 
T Consensus       188 Ll~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIv  266 (342)
T PRK09489        188 LLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMII  266 (342)
T ss_pred             HHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEE
Confidence            444444 33345899999999999999999999999999999 7788777542      0      10         22 


Q ss_pred             ----EccC---ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          238 ----LHDW---NDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       238 ----Lh~~---~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                          +|+.   +.....++++++.+.|+|||.++|+-.
T Consensus       267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan  304 (342)
T PRK09489        267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (342)
T ss_pred             ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence                3331   234457899999999999999998765

>PRK14968 putative methyltransferase; Provisional

Probab=98.63  E-value=7.9e-07  Score=74.78  Aligned_cols=114  Identities=18%  Similarity=0.266  Sum_probs=76.8

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC--e-----------------EEEccC-
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC--M-----------------WILHDW-  241 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g--v-----------------~vLh~~-  241 (333)
                      .+..+|||+|||+|.++..+++.  ..+++++|+ +.+++.++++      .+  +                 .++.+. 
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p   99 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP   99 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence            45678999999999999999987  578999999 7888766321      11  2                 111110 


Q ss_pred             --C---------------------hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCC
Q 035738          242 --N---------------------DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGK  298 (333)
Q Consensus       242 --~---------------------~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~  298 (333)
                        +                     ......+++++.+.|+|||.++++....                            
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~----------------------------  151 (188)
T PRK14968        100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL----------------------------  151 (188)
T ss_pred             cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------------------
Confidence              0                     1113468999999999999988764310                            


Q ss_pred             cCCHHHHHHHHHhCCCCeeEEeecC---CceeEEEEeC
Q 035738          299 ERTRHEFMTLATGAGFSGISCERAI---GNLWVMEFYK  333 (333)
Q Consensus       299 ~rt~~e~~~ll~~aGf~~~~~~~~~---~~~~vie~~~  333 (333)
                       ...+++.++++++||++..+....   .-..+++.+|
T Consensus       152 -~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  188 (188)
T PRK14968        152 -TGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK  188 (188)
T ss_pred             -CCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence             124578899999999888765543   2233455443

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.62  E-value=4.5e-07  Score=78.20  Aligned_cols=111  Identities=14%  Similarity=0.104  Sum_probs=77.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC-C-----------------CCe-------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP-H-----------------PCM-------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~-----------------~gv-------------  235 (333)
                      .....+|||+|||.|..+..|+++  ..+++++|+ +..++.+.+ .                 ..|             
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~  112 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA  112 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence            345679999999999999999874  568999999 777775410 0                 000             


Q ss_pred             -----------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCC--CcCCH
Q 035738          236 -----------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGG--KERTR  302 (333)
Q Consensus       236 -----------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g--~~rt~  302 (333)
                                 .++|.++++...+.++.+.++|+|||+++++....++...                    +|  ...+.
T Consensus       113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~--------------------~gPp~~~~~  172 (218)
T PRK13255        113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL--------------------AGPPFSVSD  172 (218)
T ss_pred             cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC--------------------CCCCCCCCH
Confidence                       4457888888889999999999999986665554432210                    11  13578


Q ss_pred             HHHHHHHHhCCCCeeEEee
Q 035738          303 HEFMTLATGAGFSGISCER  321 (333)
Q Consensus       303 ~e~~~ll~~aGf~~~~~~~  321 (333)
                      +|+.+++.. +|.+..+..
T Consensus       173 ~el~~~~~~-~~~i~~~~~  190 (218)
T PRK13255        173 EEVEALYAG-CFEIELLER  190 (218)
T ss_pred             HHHHHHhcC-CceEEEeee
Confidence            999999964 265555443

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.61  E-value=2.7e-07  Score=81.40  Aligned_cols=104  Identities=14%  Similarity=0.258  Sum_probs=75.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------EEEcc-----
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------WILHD-----  240 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------~vLh~-----  240 (333)
                      ...+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++++      .++                 .|+.+     
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~  166 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP  166 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence            446899999999999999999999999999999 8888776542      111                 22211     


Q ss_pred             ------CChhH------------------HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCC
Q 035738          241 ------WNDEH------------------CLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPG  296 (333)
Q Consensus       241 ------~~~~~------------------~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~  296 (333)
                            +..+.                  ...+++++.+.|+|||.+++.-.                            
T Consensus       167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~----------------------------  218 (251)
T TIGR03534       167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG----------------------------  218 (251)
T ss_pred             hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------------------------
Confidence                  11111                  13678999999999998876211                            


Q ss_pred             CCcCCHHHHHHHHHhCCCCeeEEeecC
Q 035738          297 GKERTRHEFMTLATGAGFSGISCERAI  323 (333)
Q Consensus       297 g~~rt~~e~~~ll~~aGf~~~~~~~~~  323 (333)
                        ....+++.++|+++||+.+++....
T Consensus       219 --~~~~~~~~~~l~~~gf~~v~~~~d~  243 (251)
T TIGR03534       219 --YDQGEAVRALFEAAGFADVETRKDL  243 (251)
T ss_pred             --ccHHHHHHHHHHhCCCCceEEEeCC
Confidence              0125678999999999988876643

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.61  E-value=1.9e-07  Score=83.76  Aligned_cols=130  Identities=18%  Similarity=0.204  Sum_probs=88.5

Q ss_pred             HHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CCe------
Q 035738          166 FNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PCM------  235 (333)
Q Consensus       166 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~gv------  235 (333)
                      |...-+..+......+-. +  ..++.+|||||||||-+++..++... -+++++|+ |.+++.++++   -++      
T Consensus       140 FGTG~H~TT~lcl~~l~~-~--~~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v  215 (295)
T PF06325_consen  140 FGTGHHPTTRLCLELLEK-Y--VKPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEV  215 (295)
T ss_dssp             S-SSHCHHHHHHHHHHHH-H--SSTTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEE
T ss_pred             ccCCCCHHHHHHHHHHHH-h--ccCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEE
Confidence            444444444444433332 3  33567999999999999999888654 47999999 8888887754   111      


Q ss_pred             ------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHH
Q 035738          236 ------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRH  303 (333)
Q Consensus       236 ------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~  303 (333)
                                  -|+-+.-.+....+...+.+.|+|||++++.=....                             ..+
T Consensus       216 ~~~~~~~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~-----------------------------~~~  266 (295)
T PF06325_consen  216 SLSEDLVEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEE-----------------------------QED  266 (295)
T ss_dssp             SCTSCTCCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGG-----------------------------GHH
T ss_pred             EEecccccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHH-----------------------------HHH
Confidence                        455555556667889999999999999888655321                             145


Q ss_pred             HHHHHHHhCCCCeeEEeecCCceeEE
Q 035738          304 EFMTLATGAGFSGISCERAIGNLWVM  329 (333)
Q Consensus       304 e~~~ll~~aGf~~~~~~~~~~~~~vi  329 (333)
                      ++.+.+++ ||+.++....+++..+.
T Consensus       267 ~v~~a~~~-g~~~~~~~~~~~W~~l~  291 (295)
T PF06325_consen  267 EVIEAYKQ-GFELVEEREEGEWVALV  291 (295)
T ss_dssp             HHHHHHHT-TEEEEEEEEETTEEEEE
T ss_pred             HHHHHHHC-CCEEEEEEEECCEEEEE
Confidence            67778877 99999888877776654

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.61  E-value=2.1e-07  Score=83.30  Aligned_cols=75  Identities=21%  Similarity=0.305  Sum_probs=57.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCC---eEEEeec-hhHhhhCCCC-CCe------------------EEEccCChhHH
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYI---KGINFDL-PHVIEHVPPH-PCM------------------WILHDWNDEHC  246 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~-~gv------------------~vLh~~~~~~~  246 (333)
                      ...+|||||||+|.++..+++..|..   +++++|+ +.+++.|++. +++                  .|+..+.+   
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~---  161 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP---  161 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC---
Confidence            45789999999999999999988753   6899999 8888877543 222                  33333332   


Q ss_pred             HHHHHHHHHhCCCCcEEEEEee
Q 035738          247 LKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       247 ~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                       ..+++++++|+|||+++++.+
T Consensus       162 -~~~~e~~rvLkpgG~li~~~p  182 (272)
T PRK11088        162 -CKAEELARVVKPGGIVITVTP  182 (272)
T ss_pred             -CCHHHHHhhccCCCEEEEEeC
Confidence             357899999999999999865

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.56  E-value=7.5e-07  Score=73.83  Aligned_cols=125  Identities=14%  Similarity=0.150  Sum_probs=80.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CCe-----------------------EEEccCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PCM-----------------------WILHDWN  242 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~gv-----------------------~vLh~~~  242 (333)
                      .++..||||+|||.|.++..|.+. .++++.|+|+ ++-+..+.+. -+|                       .+|....
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~   89 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR   89 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence            446799999999999999888775 6899999999 5545444332 011                       4444444


Q ss_pred             hhHHHHHHHHHHHhCCCCcEEEEEeeecCC---------CCCCcc-ccccccchhhHHHhhCCCCCcCCHHHHHHHHHhC
Q 035738          243 DEHCLKLLKNCYKSIPEDGKVIAVELMLPE---------VPNTSI-ESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGA  312 (333)
Q Consensus       243 ~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~---------~~~~~~-~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~a  312 (333)
                      .++  ++|+++.++   |.+.+|.=+....         ...++. ......|++      ++|-...|..++.+++++.
T Consensus        90 ~P~--~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYd------TPNih~~Ti~DFe~lc~~~  158 (193)
T PF07021_consen   90 RPD--EVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYD------TPNIHLCTIKDFEDLCREL  158 (193)
T ss_pred             HHH--HHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccC------CCCcccccHHHHHHHHHHC
Confidence            444  788888776   4444443331110         000110 011123333      4677788999999999999


Q ss_pred             CCCeeEEeecCC
Q 035738          313 GFSGISCERAIG  324 (333)
Q Consensus       313 Gf~~~~~~~~~~  324 (333)
                      |+++++.....+
T Consensus       159 ~i~I~~~~~~~~  170 (193)
T PF07021_consen  159 GIRIEERVFLDG  170 (193)
T ss_pred             CCEEEEEEEEcC
Confidence            999999887753

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.56  E-value=6.6e-07  Score=79.62  Aligned_cols=110  Identities=17%  Similarity=0.220  Sum_probs=80.2

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC---e---------------EEEccCCh
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC---M---------------WILHDWND  243 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g---v---------------~vLh~~~~  243 (333)
                      .++.+|+|||||+|-++++.++-.. .+++++|+ |..++.++.+      +.   +               -|.++.=-
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA  239 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA  239 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence            4789999999999999998887554 47899999 7778777653      10   0               23333333


Q ss_pred             hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecC
Q 035738          244 EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAI  323 (333)
Q Consensus       244 ~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~  323 (333)
                      +...++...+++.++|||++++.-.+ .+                            ..+...+.+.++||.++++....
T Consensus       240 ~vl~~La~~~~~~lkpgg~lIlSGIl-~~----------------------------q~~~V~~a~~~~gf~v~~~~~~~  290 (300)
T COG2264         240 EVLVELAPDIKRLLKPGGRLILSGIL-ED----------------------------QAESVAEAYEQAGFEVVEVLERE  290 (300)
T ss_pred             HHHHHHHHHHHHHcCCCceEEEEeeh-Hh----------------------------HHHHHHHHHHhCCCeEeEEEecC
Confidence            44568999999999999998876542 11                            14567888899999999988776


Q ss_pred             CceeE
Q 035738          324 GNLWV  328 (333)
Q Consensus       324 ~~~~v  328 (333)
                      .+..+
T Consensus       291 eW~~i  295 (300)
T COG2264         291 EWVAI  295 (300)
T ss_pred             CEEEE
Confidence            55443

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.54  E-value=1.3e-07  Score=79.21  Aligned_cols=120  Identities=15%  Similarity=0.114  Sum_probs=78.1

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC--e-----------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC--M-----------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g--v-----------------  235 (333)
                      ..++..++ .-++.++||+|||.|..+..|+++.  ..++.+|. +..++.+++.   .+  +                 
T Consensus        20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD   96 (192)
T PF03848_consen   20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD   96 (192)
T ss_dssp             HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred             HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence            34555555 4467899999999999999999975  56999999 6666654421   01  1                 


Q ss_pred             -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHH
Q 035738          236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLAT  310 (333)
Q Consensus       236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~  310 (333)
                           .|+++++.+...++++++.+.++|||.+++...+..++. +       .-..        -...+...|+.+.+ 
T Consensus        97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~-p-------~~~~--------~~f~~~~~EL~~~y-  159 (192)
T PF03848_consen   97 FIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDY-P-------CPSP--------FPFLLKPGELREYY-  159 (192)
T ss_dssp             EEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS----------SS----------S--B-TTHHHHHT-
T ss_pred             EEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCC-C-------CCCC--------CCcccCHHHHHHHh-
Confidence                 357888888889999999999999999888766432211 0       0000        11123567888888 


Q ss_pred             hCCCCeeEE
Q 035738          311 GAGFSGISC  319 (333)
Q Consensus       311 ~aGf~~~~~  319 (333)
                       +||++++.
T Consensus       160 -~dW~il~y  167 (192)
T PF03848_consen  160 -ADWEILKY  167 (192)
T ss_dssp             -TTSEEEEE
T ss_pred             -CCCeEEEE
Confidence             47877764

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.53  E-value=3.3e-07  Score=77.78  Aligned_cols=88  Identities=18%  Similarity=0.367  Sum_probs=70.9

Q ss_pred             HHHhhcc-CCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----------C-------------
Q 035738          180 NILESYK-GFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----------P-------------  233 (333)
Q Consensus       180 ~~~~~~~-~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~-------------  233 (333)
                      ..++.+. .+..+..+|||||.+|.++..+++.+....+.++|+ +..|..|+++           +             
T Consensus        47 ~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~  126 (288)
T KOG2899|consen   47 PRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGP  126 (288)
T ss_pred             hhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccc
Confidence            3444443 256788999999999999999999999999999999 6778877653           1             


Q ss_pred             -----------------Ce--------------------------------EEEccCChhHHHHHHHHHHHhCCCCcEEE
Q 035738          234 -----------------CM--------------------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVI  264 (333)
Q Consensus       234 -----------------gv--------------------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~  264 (333)
                                       ++                                +|--+|.|+-..++|+++++.|.|||+++
T Consensus       127 is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv  206 (288)
T KOG2899|consen  127 ISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV  206 (288)
T ss_pred             ccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE
Confidence                             00                                66668999999999999999999999865


Q ss_pred             EEee
Q 035738          265 AVEL  268 (333)
Q Consensus       265 i~e~  268 (333)
                      + |+
T Consensus       207 v-EP  209 (288)
T KOG2899|consen  207 V-EP  209 (288)
T ss_pred             E-cC
Confidence            4 54

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.52  E-value=1.4e-07  Score=78.37  Aligned_cols=79  Identities=19%  Similarity=0.292  Sum_probs=61.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------EEEccCC---
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------WILHDWN---  242 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------~vLh~~~---  242 (333)
                      ...+|||+|||+|..+..+++++|+.+++.+|+ +.+++.++++      .++                 .|+.+.|   
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~  110 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA  110 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence            567899999999999999999999999999999 8888877653      112                 4444432   


Q ss_pred             --h---hHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          243 --D---EHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       243 --~---~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                        +   .-..++++.+.+.|+|||.++++-.
T Consensus       111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~  141 (170)
T PF05175_consen  111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN  141 (170)
T ss_dssp             TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence              1   1356899999999999999987554

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.52  E-value=7e-08  Score=80.10  Aligned_cols=115  Identities=12%  Similarity=0.194  Sum_probs=81.7

Q ss_pred             hccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CCe----------------------E
Q 035738          184 SYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PCM----------------------W  236 (333)
Q Consensus       184 ~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~gv----------------------~  236 (333)
                      .++ -....+++|+|||.|.++..|+.++.  +.+++|+ +..++.|++.    ++|                      .
T Consensus        38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE  114 (201)
T PF05401_consen   38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE  114 (201)
T ss_dssp             HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred             hcC-ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence            355 66778999999999999999999974  6888999 8889888653    222                      8


Q ss_pred             EEccCCh-hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCC
Q 035738          237 ILHDWND-EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFS  315 (333)
Q Consensus       237 vLh~~~~-~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~  315 (333)
                      |+|++++ ++...+++++.++|+|||.+++......                 ...   .-|.....+.+.++|++. |+
T Consensus       115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~-----------------~c~---~wgh~~ga~tv~~~~~~~-~~  173 (201)
T PF05401_consen  115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA-----------------NCR---RWGHAAGAETVLEMLQEH-LT  173 (201)
T ss_dssp             -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH-----------------HHH---HTT-S--HHHHHHHHHHH-SE
T ss_pred             HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC-----------------ccc---ccCcccchHHHHHHHHHH-hh
Confidence            8899986 5677899999999999999999876210                 000   122333577888888876 56


Q ss_pred             eeEEeec
Q 035738          316 GISCERA  322 (333)
Q Consensus       316 ~~~~~~~  322 (333)
                      .++...+
T Consensus       174 ~~~~~~~  180 (201)
T PF05401_consen  174 EVERVEC  180 (201)
T ss_dssp             EEEEEEE
T ss_pred             heeEEEE
Confidence            6666554

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.50  E-value=1.5e-06  Score=76.16  Aligned_cols=136  Identities=17%  Similarity=0.160  Sum_probs=92.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCC--CeEEEeec-hhHhhhCCCC-----------------------------CCe
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPY--IKGINFDL-PHVIEHVPPH-----------------------------PCM  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~-----------------------------~gv  235 (333)
                      -..+.+||||.||+|.+....+..+|.  .++...|. |..++..++.                             |++
T Consensus       133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l  212 (311)
T PF12147_consen  133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL  212 (311)
T ss_pred             cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence            347889999999999999999999997  67888898 7777765532                             111


Q ss_pred             ----EEEccCChhH-HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCC-----CcCCHHHH
Q 035738          236 ----WILHDWNDEH-CLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGG-----KERTRHEF  305 (333)
Q Consensus       236 ----~vLh~~~~~~-~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g-----~~rt~~e~  305 (333)
                          -+.-.++|.+ +.+.|+-+++++.|||.++..-.-.     ++..+    ........+ .+|     +.||..|+
T Consensus       213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPw-----HPQle----~IAr~LtsH-r~g~~WvMRrRsq~Em  282 (311)
T PF12147_consen  213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPW-----HPQLE----MIARVLTSH-RDGKAWVMRRRSQAEM  282 (311)
T ss_pred             EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCC-----CcchH----HHHHHHhcc-cCCCceEEEecCHHHH
Confidence                3333567766 4467999999999999988765422     11111    111122211 122     46899999


Q ss_pred             HHHHHhCCCCeeEEeecC-CceeEEEEeC
Q 035738          306 MTLATGAGFSGISCERAI-GNLWVMEFYK  333 (333)
Q Consensus       306 ~~ll~~aGf~~~~~~~~~-~~~~vie~~~  333 (333)
                      .+|.+.|||+.++..--. +-+.|..++|
T Consensus       283 D~Lv~~aGF~K~~q~ID~~GIFTVSlA~r  311 (311)
T PF12147_consen  283 DQLVEAAGFEKIDQRIDEWGIFTVSLARR  311 (311)
T ss_pred             HHHHHHcCCchhhheeccCCceEEEeecC
Confidence            999999999877654333 4455655543

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.50  E-value=1.8e-06  Score=77.41  Aligned_cols=44  Identities=18%  Similarity=0.342  Sum_probs=38.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ..+..+|||+|||+|..+..++...|+.+++++|+ +.+++.+++
T Consensus       106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~  150 (275)
T PRK09328        106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARR  150 (275)
T ss_pred             ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence            44667999999999999999999999999999999 777776653

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.47  E-value=1.2e-06  Score=73.43  Aligned_cols=139  Identities=17%  Similarity=0.187  Sum_probs=81.7

Q ss_pred             HHHHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhh---C--CCCC-----
Q 035738          164 KHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEH---V--PPHP-----  233 (333)
Q Consensus       164 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~---a--~~~~-----  233 (333)
                      .-|.+.+..|.....+.+++.+...+....|.|.|||.+.++..+...   .++.-+|+-..-+.   |  ...|     
T Consensus        46 ~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~---~~V~SfDLva~n~~Vtacdia~vPL~~~s  122 (219)
T PF05148_consen   46 EGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK---HKVHSFDLVAPNPRVTACDIANVPLEDES  122 (219)
T ss_dssp             HHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-SSTTEEES-TTS-S--TT-
T ss_pred             HHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC---ceEEEeeccCCCCCEEEecCccCcCCCCc
Confidence            345555556666667777777764556789999999999999766432   34555565111110   0  1111     


Q ss_pred             -Ce--EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHH
Q 035738          234 -CM--WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLAT  310 (333)
Q Consensus       234 -gv--~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~  310 (333)
                       +|  ++|.-... +....|+++.|+|||||.+.|.|....          +                 -+.+++.+.++
T Consensus       123 vDv~VfcLSLMGT-n~~~fi~EA~RvLK~~G~L~IAEV~SR----------f-----------------~~~~~F~~~~~  174 (219)
T PF05148_consen  123 VDVAVFCLSLMGT-NWPDFIREANRVLKPGGILKIAEVKSR----------F-----------------ENVKQFIKALK  174 (219)
T ss_dssp             EEEEEEES---SS--HHHHHHHHHHHEEEEEEEEEEEEGGG----------------------------S-HHHHHHHHH
T ss_pred             eeEEEEEhhhhCC-CcHHHHHHHHheeccCcEEEEEEeccc----------C-----------------cCHHHHHHHHH
Confidence             12  55554443 345899999999999999999998321          0                 13667889999


Q ss_pred             hCCCCeeEEeecCCceeEEEEeC
Q 035738          311 GAGFSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       311 ~aGf~~~~~~~~~~~~~vie~~~  333 (333)
                      ..||+.........++.+++..|
T Consensus       175 ~~GF~~~~~d~~n~~F~~f~F~K  197 (219)
T PF05148_consen  175 KLGFKLKSKDESNKHFVLFEFKK  197 (219)
T ss_dssp             CTTEEEEEEE--STTEEEEEEEE
T ss_pred             HCCCeEEecccCCCeEEEEEEEE
Confidence            99999888765566677777654

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK04457 spermidine synthase; Provisional

Probab=98.46  E-value=4.4e-07  Score=80.59  Aligned_cols=79  Identities=22%  Similarity=0.373  Sum_probs=61.4

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe-------------------EEEcc-
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM-------------------WILHD-  240 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv-------------------~vLh~-  240 (333)
                      +++.+|||||||+|.++..+++.+|+.+++++|+ |.+++.++++       +.+                   .|+-+ 
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~  144 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG  144 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence            3567999999999999999999999999999999 8999887653       112                   23322 


Q ss_pred             CChh------HHHHHHHHHHHhCCCCcEEEEEe
Q 035738          241 WNDE------HCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       241 ~~~~------~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      ++..      ...++++++++.|+|||++++.-
T Consensus       145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~  177 (262)
T PRK04457        145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL  177 (262)
T ss_pred             CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence            1111      12589999999999999998853

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.46  E-value=8.7e-07  Score=75.18  Aligned_cols=126  Identities=10%  Similarity=0.033  Sum_probs=73.8

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------------C-------Ce----EEEccCChh
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------------P-------CM----WILHDWNDE  244 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~-------gv----~vLh~~~~~  244 (333)
                      ...+|||||||+|.++..+++. ...+++++|+ +.+++.+++.             +       ++    .+||+.++.
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~   91 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNP   91 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCH
Confidence            5679999999999999888765 3567899998 6776654321             0       11    667777765


Q ss_pred             HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcc-----ccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEE
Q 035738          245 HCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSI-----ESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISC  319 (333)
Q Consensus       245 ~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~-----~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~  319 (333)
                      .  ++|+++.+.+++   +++.-+..........     .......+...... .+.....+.+++.++++++||+++++
T Consensus        92 ~--~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ll~~~Gf~v~~~  165 (194)
T TIGR02081        92 E--EILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYN-TPNIHFCTIADFEDLCGELNLRILDR  165 (194)
T ss_pred             H--HHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccC-CCCcccCcHHHHHHHHHHCCCEEEEE
Confidence            4  788888887553   3332111100000000     00000000000000 01234678999999999999999987


Q ss_pred             eec
Q 035738          320 ERA  322 (333)
Q Consensus       320 ~~~  322 (333)
                      ...
T Consensus       166 ~~~  168 (194)
T TIGR02081       166 AAF  168 (194)
T ss_pred             EEe
Confidence            765

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.44  E-value=8e-07  Score=72.24  Aligned_cols=103  Identities=17%  Similarity=0.129  Sum_probs=71.2

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC-e---------------------------
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC-M---------------------------  235 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g-v---------------------------  235 (333)
                      ..+|||+|||+|.++..|++.--.-+.+++|. +.+++.|+..      ++ +                           
T Consensus        68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D  147 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD  147 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence            34999999999999999998755556788898 7777766532      22 1                           


Q ss_pred             -EEEc-cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCC
Q 035738          236 -WILH-DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAG  313 (333)
Q Consensus       236 -~vLh-~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aG  313 (333)
                       .-|| +-++......+..+.+.|+|||+++|...                              ..|.+|+.+.++.-|
T Consensus       148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC------------------------------N~T~dELv~~f~~~~  197 (227)
T KOG1271|consen  148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC------------------------------NFTKDELVEEFENFN  197 (227)
T ss_pred             eeecCCCCcccceeeehhhHhhccCCCcEEEEEec------------------------------CccHHHHHHHHhcCC
Confidence             1122 11111113456666677777777766543                              236889999999999


Q ss_pred             CCeeEEeecC
Q 035738          314 FSGISCERAI  323 (333)
Q Consensus       314 f~~~~~~~~~  323 (333)
                      |....++|++
T Consensus       198 f~~~~tvp~p  207 (227)
T KOG1271|consen  198 FEYLSTVPTP  207 (227)
T ss_pred             eEEEEeeccc
Confidence            9999998876

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.42  E-value=2e-06  Score=74.60  Aligned_cols=45  Identities=13%  Similarity=0.217  Sum_probs=40.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      .....+|||+|||+|..+..+++++++++++++++ +.+.+.|+++
T Consensus        42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~n   87 (248)
T COG4123          42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRN   87 (248)
T ss_pred             cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHH
Confidence            45589999999999999999999999999999999 7888888753

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.42  E-value=6.2e-07  Score=78.38  Aligned_cols=121  Identities=17%  Similarity=0.285  Sum_probs=71.5

Q ss_pred             CCCeEEEEcCCc--cHHHHHH-HHHCCCCeEEEeec-hhHhhhCCCC----CC--e------------------------
Q 035738          190 NIKQLVDVGGGI--GVTLQAI-TTKYPYIKGINFDL-PHVIEHVPPH----PC--M------------------------  235 (333)
Q Consensus       190 ~~~~vlDVGgG~--G~~~~~l-~~~~p~~~~~~~D~-~~~~~~a~~~----~g--v------------------------  235 (333)
                      +..++||||||-  -...-++ .+..|+.+++.+|. |-++.+++..    ++  .                        
T Consensus        68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD  147 (267)
T PF04672_consen   68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD  147 (267)
T ss_dssp             ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred             CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence            788999999993  3344444 55689999999999 8888887642    21  0                        


Q ss_pred             ----------EEEccCCh-hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHH
Q 035738          236 ----------WILHDWND-EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHE  304 (333)
Q Consensus       236 ----------~vLh~~~~-~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e  304 (333)
                                .+||+.+| ++...+++.++++|.||+.|+|...+.+..+..     .......+-.. ...+..||.+|
T Consensus       148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~-----~~~~~~~~~~~-~~~~~~Rs~~e  221 (267)
T PF04672_consen  148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPER-----AEALEAVYAQA-GSPGRPRSREE  221 (267)
T ss_dssp             TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHH-----HHHHHHHHHHC-CS----B-HHH
T ss_pred             CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHH-----HHHHHHHHHcC-CCCceecCHHH
Confidence                      77899887 677899999999999999999999876532110     11112222222 23567899999


Q ss_pred             HHHHHHhCCCCeeE
Q 035738          305 FMTLATGAGFSGIS  318 (333)
Q Consensus       305 ~~~ll~~aGf~~~~  318 (333)
                      +.++|.  ||+.++
T Consensus       222 i~~~f~--g~elve  233 (267)
T PF04672_consen  222 IAAFFD--GLELVE  233 (267)
T ss_dssp             HHHCCT--TSEE-T
T ss_pred             HHHHcC--CCccCC
Confidence            999995  887653

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.40  E-value=1.1e-06  Score=75.76  Aligned_cols=84  Identities=12%  Similarity=0.141  Sum_probs=61.1

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------CCe---------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------PCM---------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~gv---------------  235 (333)
                      ..+++.+. ..+..+|||||||+|.++..+++..+ +.+++++|+ +.+++.++++      .++               
T Consensus        67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~  145 (215)
T TIGR00080        67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA  145 (215)
T ss_pred             HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence            34455555 66788999999999999999998865 578999998 8888877643      122               


Q ss_pred             ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 035738          236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAV  266 (333)
Q Consensus       236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~  266 (333)
                         .++.+.+   +..+.+.+.+.|+|||++++.
T Consensus       146 ~fD~Ii~~~~---~~~~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       146 PYDRIYVTAA---GPKIPEALIDQLKEGGILVMP  176 (215)
T ss_pred             CCCEEEEcCC---cccccHHHHHhcCcCcEEEEE
Confidence               2222211   235778889999999998875

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.37  E-value=8.2e-07  Score=75.49  Aligned_cols=73  Identities=23%  Similarity=0.380  Sum_probs=57.3

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCCCe------------------------------EEEc
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHPCM------------------------------WILH  239 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~gv------------------------------~vLh  239 (333)
                      ...++|||||+|..++.++..|.+  +|+.|. +.+++.+++.+.+                              .++|
T Consensus        34 h~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H  111 (261)
T KOG3010|consen   34 HRLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH  111 (261)
T ss_pred             cceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHH
Confidence            348999999999888888888765  778899 8999999875221                              7778


Q ss_pred             cCChhHHHHHHHHHHHhCCCCc-EEEEEee
Q 035738          240 DWNDEHCLKLLKNCYKSIPEDG-KVIAVEL  268 (333)
Q Consensus       240 ~~~~~~~~~lL~~~~~~L~pgG-~l~i~e~  268 (333)
                      .++-+   +..+.++++|+|.| .+.|--.
T Consensus       112 WFdle---~fy~~~~rvLRk~Gg~iavW~Y  138 (261)
T KOG3010|consen  112 WFDLE---RFYKEAYRVLRKDGGLIAVWNY  138 (261)
T ss_pred             hhchH---HHHHHHHHHcCCCCCEEEEEEc
Confidence            77755   69999999998876 5555444

>PRK01581 speE spermidine synthase; Validated

Probab=98.37  E-value=1.3e-06  Score=79.92  Aligned_cols=79  Identities=20%  Similarity=0.255  Sum_probs=61.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------------CCe------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------------PCM------------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~gv------------------  235 (333)
                      ..++.+||+||||+|..+..+++..+..+++.+|+ |.+++.|+++             +.+                  
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y  227 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY  227 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence            34678999999999999999988666678999999 8899988852             222                  


Q ss_pred             -EEEccCChhH--------HHHHHHHHHHhCCCCcEEEEE
Q 035738          236 -WILHDWNDEH--------CLKLLKNCYKSIPEDGKVIAV  266 (333)
Q Consensus       236 -~vLh~~~~~~--------~~~lL~~~~~~L~pgG~l~i~  266 (333)
                       .|+-+++++.        ..+.++.+++.|+|||.+++.
T Consensus       228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence             5556665542        246899999999999998886

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.36  E-value=4.8e-06  Score=71.42  Aligned_cols=88  Identities=18%  Similarity=0.122  Sum_probs=57.2

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechhHhhh---------CCC----------C--CCe-EE
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDLPHVIEH---------VPP----------H--PCM-WI  237 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~---------a~~----------~--~gv-~v  237 (333)
                      +.+.+..+.+..+|||||||+|.++..+++.. +..+++++|+..+...         +..          .  ..+ .|
T Consensus        42 ~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V  121 (209)
T PRK11188         42 IQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVV  121 (209)
T ss_pred             HHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEE
Confidence            33334324567799999999999999999986 4578999998432110         000          0  011 33


Q ss_pred             EccC-----Chh---------HHHHHHHHHHHhCCCCcEEEEEee
Q 035738          238 LHDW-----NDE---------HCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       238 Lh~~-----~~~---------~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      +.+.     .++         ....+|+.+++.|+|||.+++...
T Consensus       122 ~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~  166 (209)
T PRK11188        122 MSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF  166 (209)
T ss_pred             ecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            3322     111         124689999999999999999765

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.33  E-value=2.5e-06  Score=72.99  Aligned_cols=84  Identities=10%  Similarity=0.050  Sum_probs=58.7

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------CC-e---------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------PC-M---------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~g-v---------------  235 (333)
                      .+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|+ +.+++.++++      .+ +               
T Consensus        63 ~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~  141 (205)
T PRK13944         63 MMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA  141 (205)
T ss_pred             HHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence            3444444 56678999999999999999988764 568999999 7888766542      11 2               


Q ss_pred             ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738          236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                         .++-...   ...+.+++.+.|+|||++++..
T Consensus       142 ~fD~Ii~~~~---~~~~~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        142 PFDAIIVTAA---ASTIPSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             CccEEEEccC---cchhhHHHHHhcCcCcEEEEEE
Confidence               1111111   1245678889999999998753

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.31  E-value=3.9e-06  Score=72.29  Aligned_cols=99  Identities=12%  Similarity=0.168  Sum_probs=79.1

Q ss_pred             Hhhhhhh----hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHH-HCCCCeEEEeec-hhHhhhCCCC---CC----e-
Q 035738          170 MYNYTSL----VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITT-KYPYIKGINFDL-PHVIEHVPPH---PC----M-  235 (333)
Q Consensus       170 m~~~~~~----~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~---~g----v-  235 (333)
                      |...+..    -+..++.... ..++.+|+|.|.|+|.++..|+. ..|.-+++.+|+ ++..+.|+++   .+    + 
T Consensus        71 ~~R~tQiIyPKD~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~  149 (256)
T COG2519          71 MKRRTQIIYPKDAGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVT  149 (256)
T ss_pred             CcCCCceecCCCHHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceE
Confidence            5544443    2344555555 88999999999999999999996 678899999999 8899988864   11    1 


Q ss_pred             ----------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738          236 ----------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLP  271 (333)
Q Consensus       236 ----------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~  271 (333)
                                      .++-|.+++.  +.+.++.++|+|||.+++.-++.+
T Consensus       150 ~~~~Dv~~~~~~~~vDav~LDmp~PW--~~le~~~~~Lkpgg~~~~y~P~ve  199 (256)
T COG2519         150 LKLGDVREGIDEEDVDAVFLDLPDPW--NVLEHVSDALKPGGVVVVYSPTVE  199 (256)
T ss_pred             EEeccccccccccccCEEEEcCCChH--HHHHHHHHHhCCCcEEEEEcCCHH
Confidence                            6667888887  899999999999999999988654

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.31  E-value=8.7e-07  Score=75.08  Aligned_cols=76  Identities=14%  Similarity=0.224  Sum_probs=55.2

Q ss_pred             eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC------CCCe---------------------EEEccCChh
Q 035738          193 QLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP------HPCM---------------------WILHDWNDE  244 (333)
Q Consensus       193 ~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~gv---------------------~vLh~~~~~  244 (333)
                      .+||||||.|.++..+++.+|+..++|+|+ ...+..+.+      ..++                     .+.-++||+
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP   99 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP   99 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence            899999999999999999999999999999 666554432      1222                     333344544


Q ss_pred             H-----------HHHHHHHHHHhCCCCcEEEEEee
Q 035738          245 H-----------CLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       245 ~-----------~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      .           ....|+.+.+.|+|||.|.+..-
T Consensus       100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD  134 (195)
T PF02390_consen  100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD  134 (195)
T ss_dssp             --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence            3           24689999999999998877654

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.28  E-value=1.3e-05  Score=74.75  Aligned_cols=43  Identities=19%  Similarity=0.256  Sum_probs=38.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      +..+|||+|||+|..+..+++.+|+.+++++|+ +.+++.++++
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreN  294 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKN  294 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence            446899999999999999999999999999999 8899887754

>PRK14967 putative methyltransferase; Provisional

Probab=98.28  E-value=9.6e-06  Score=70.37  Aligned_cols=82  Identities=11%  Similarity=0.095  Sum_probs=56.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC--e-----------------EEEccC---
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC--M-----------------WILHDW---  241 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g--v-----------------~vLh~~---  241 (333)
                      .....+|||+|||+|.++..+++. +..+++++|+ +.+++.++++   .+  +                 .|+.+.   
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~  112 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV  112 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence            455679999999999999988875 3358999999 7777755432   11  1                 222221   


Q ss_pred             Ch---------------------hHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          242 ND---------------------EHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       242 ~~---------------------~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                      +.                     .....+++++.+.|+|||+++++....
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~  162 (223)
T PRK14967        113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL  162 (223)
T ss_pred             CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            00                     013468899999999999999876543

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.27  E-value=1.4e-05  Score=70.64  Aligned_cols=43  Identities=19%  Similarity=0.190  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ...+|||+|||+|.++..+++.+|..+++++|+ +.+++.++++
T Consensus        86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N  129 (251)
T TIGR03704        86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRN  129 (251)
T ss_pred             CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence            345899999999999999999999999999999 8888877653

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.27  E-value=4e-06  Score=72.18  Aligned_cols=85  Identities=12%  Similarity=0.147  Sum_probs=60.6

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC------CCe---------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH------PCM---------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~gv---------------  235 (333)
                      ..++..++ ..+..+|||||||+|..+..+++.. ++.+++++|+ +.+++.++++      .++               
T Consensus        66 ~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~  144 (212)
T PRK13942         66 AIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA  144 (212)
T ss_pred             HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence            34555555 6778899999999999999888875 4578999999 8888877653      122               


Q ss_pred             ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738          236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                         .|+-..   ...++.+.+.+.|+|||++++..
T Consensus       145 ~fD~I~~~~---~~~~~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        145 PYDRIYVTA---AGPDIPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CcCEEEECC---CcccchHHHHHhhCCCcEEEEEE
Confidence               111111   12346677888999999988854

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.25  E-value=5.4e-06  Score=80.42  Aligned_cols=42  Identities=19%  Similarity=0.332  Sum_probs=37.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ...+|||+|||+|..+..++..+|+.+++++|+ +.+++.|++
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~  180 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKS  180 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHH
Confidence            346899999999999999999999999999999 788887765

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.23  E-value=4e-06  Score=75.38  Aligned_cols=42  Identities=19%  Similarity=0.309  Sum_probs=37.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      +..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~  163 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEI  163 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence            457899999999999999999999999999999 888887764

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.23  E-value=1.4e-05  Score=68.65  Aligned_cols=152  Identities=14%  Similarity=0.114  Sum_probs=90.6

Q ss_pred             hhhhcCCchhHHHHHHHHh----hhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHH-------HCCCCeEEEee
Q 035738          153 FEYAGLDPGFNKHFNTVMY----NYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITT-------KYPYIKGINFD  221 (333)
Q Consensus       153 ~~~~~~~~~~~~~f~~~m~----~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~-------~~p~~~~~~~D  221 (333)
                      +..+-++|+....|.....    .|.....+.++..+...+....|.|+|||-+..+...-.       .-++-+++.+|
T Consensus       139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~~~~kV~SfDL~a~~~~V~~cD  218 (325)
T KOG3045|consen  139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASSERHKVHSFDLVAVNERVIACD  218 (325)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhccccceeeeeeecCCCceeecc
Confidence            3445566665555554443    333345566666665455778999999999998861110       01122334444


Q ss_pred             chhHhhhCCCCCCe--EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCc
Q 035738          222 LPHVIEHVPPHPCM--WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKE  299 (333)
Q Consensus       222 ~~~~~~~a~~~~gv--~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~  299 (333)
                      +..+ ......-+|  ++|.-+.. +....+++++++|+|||.++|.|.-..                           .
T Consensus       219 m~~v-Pl~d~svDvaV~CLSLMgt-n~~df~kEa~RiLk~gG~l~IAEv~SR---------------------------f  269 (325)
T KOG3045|consen  219 MRNV-PLEDESVDVAVFCLSLMGT-NLADFIKEANRILKPGGLLYIAEVKSR---------------------------F  269 (325)
T ss_pred             ccCC-cCccCcccEEEeeHhhhcc-cHHHHHHHHHHHhccCceEEEEehhhh---------------------------c
Confidence            3221 000000122  66655443 345799999999999999999997321                           1


Q ss_pred             CCHHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738          300 RTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       300 rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  333 (333)
                      .+...+.+.|...||...++.....++..+|..|
T Consensus       270 ~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK  303 (325)
T KOG3045|consen  270 SDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK  303 (325)
T ss_pred             ccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence            1233478889999998777766666666776654

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.23  E-value=1.1e-06  Score=72.25  Aligned_cols=88  Identities=20%  Similarity=0.191  Sum_probs=56.4

Q ss_pred             EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccc-------------hhhHHHhhCCCCCcCCH
Q 035738          236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSD-------------SDVLMMIQSPGGKERTR  302 (333)
Q Consensus       236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~-------------~d~~m~~~~~~g~~rt~  302 (333)
                      .++|++++..  ++|++++++|||||+++|.|...++..-......+...             .....+..+ -....+.
T Consensus        52 ~~l~~~~d~~--~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~s-i~~f~~~  128 (160)
T PLN02232         52 YGLRNVVDRL--RAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYS-INGYLTG  128 (160)
T ss_pred             chhhcCCCHH--HHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHH-HHHCcCH
Confidence            7788887655  99999999999999999999976543110000000000             000000000 0134589


Q ss_pred             HHHHHHHHhCCCCeeEEeecCCce
Q 035738          303 HEFMTLATGAGFSGISCERAIGNL  326 (333)
Q Consensus       303 ~e~~~ll~~aGf~~~~~~~~~~~~  326 (333)
                      +++.++|+++||+.++......+.
T Consensus       129 ~el~~ll~~aGF~~~~~~~~~~g~  152 (160)
T PLN02232        129 EELETLALEAGFSSACHYEISGGF  152 (160)
T ss_pred             HHHHHHHHHcCCCcceEEECcchH
Confidence            999999999999999888776554

>PRK00811 spermidine synthase; Provisional

Probab=98.22  E-value=4.2e-06  Score=75.24  Aligned_cols=78  Identities=27%  Similarity=0.376  Sum_probs=60.0

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----------CCe-------------------EE
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----------PCM-------------------WI  237 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~gv-------------------~v  237 (333)
                      +++.+||+||||+|..+..+++..+..+++++|+ +.+++.++++           +.+                   .|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            4678999999999999999997655668999999 8898888753           122                   45


Q ss_pred             EccCChhH-------HHHHHHHHHHhCCCCcEEEEE
Q 035738          238 LHDWNDEH-------CLKLLKNCYKSIPEDGKVIAV  266 (333)
Q Consensus       238 Lh~~~~~~-------~~~lL~~~~~~L~pgG~l~i~  266 (333)
                      +.+.+++.       ..++++.+++.|+|||.+++.
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            55543321       247899999999999998864

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.22  E-value=9.4e-06  Score=74.70  Aligned_cols=101  Identities=14%  Similarity=0.006  Sum_probs=69.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe------------------EEEccCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM------------------WILHDWN  242 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv------------------~vLh~~~  242 (333)
                      +.+..+|||+|||+|.++.+++.  ...+++++|+ +.+++.++.+      .++                  .++.+.|
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~--~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP  257 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGL--MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP  257 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHH--hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence            66778999999999999887655  3578999999 7887765532      111                  3333211


Q ss_pred             ------------hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHH
Q 035738          243 ------------DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLAT  310 (333)
Q Consensus       243 ------------~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~  310 (333)
                                  .+...++|+++.+.|+|||++++.-+..                                .+|.++++
T Consensus       258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--------------------------------~~~~~~~~  305 (329)
T TIGR01177       258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--------------------------------IDLESLAE  305 (329)
T ss_pred             CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--------------------------------CCHHHHHh
Confidence                        1223578999999999999988875411                                13456788


Q ss_pred             hCCCCeeEEeecC
Q 035738          311 GAGFSGISCERAI  323 (333)
Q Consensus       311 ~aGf~~~~~~~~~  323 (333)
                      ++|| ++......
T Consensus       306 ~~g~-i~~~~~~~  317 (329)
T TIGR01177       306 DAFR-VVKRFEVR  317 (329)
T ss_pred             hcCc-chheeeee
Confidence            8999 77766543

This family is found exclusively in the Archaea.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.19  E-value=2e-05  Score=66.42  Aligned_cols=87  Identities=14%  Similarity=0.149  Sum_probs=56.2

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechhHhh---------hCCC----------CC--Ce-EE
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDLPHVIE---------HVPP----------HP--CM-WI  237 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~---------~a~~----------~~--gv-~v  237 (333)
                      +...+....+..+|||+|||+|.++..+++++ +..+++++|+.....         .+..          .+  ++ .|
T Consensus        23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V  102 (188)
T TIGR00438        23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVV  102 (188)
T ss_pred             HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEE
Confidence            33444445678899999999999999998887 567899999833210         0000          00  11 22


Q ss_pred             Ecc--------CCh------hHHHHHHHHHHHhCCCCcEEEEEe
Q 035738          238 LHD--------WND------EHCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       238 Lh~--------~~~------~~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      +.+        |+.      +....+|+.+++.|+|||++++.-
T Consensus       103 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438       103 MSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             EcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            211        110      112578999999999999988853

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.18  E-value=5.2e-06  Score=75.44  Aligned_cols=40  Identities=18%  Similarity=0.279  Sum_probs=36.9

Q ss_pred             CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      .+|||+|||+|.++..++..+|+.+++++|+ +.+++.|++
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~  175 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEI  175 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence            6899999999999999999999999999999 888887764

>PRK03612 spermidine synthase; Provisional

Probab=98.17  E-value=1.1e-05  Score=78.77  Aligned_cols=78  Identities=22%  Similarity=0.402  Sum_probs=61.2

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC-------------CCe------------------
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH-------------PCM------------------  235 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------------~gv------------------  235 (333)
                      +++.+|||||||+|..+..+++ +|. .+++++|+ |.+++.++++             |++                  
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f  374 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF  374 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence            4678999999999999999987 565 78999999 8999988762             222                  


Q ss_pred             -EEEccCChhH--------HHHHHHHHHHhCCCCcEEEEEe
Q 035738          236 -WILHDWNDEH--------CLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       236 -~vLh~~~~~~--------~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                       .|+.+++++.        ..++++++++.|+|||.+++.-
T Consensus       375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence             5666666542        1258899999999999988764

>PHA03411 putative methyltransferase; Provisional

Probab=98.15  E-value=1.6e-05  Score=70.16  Aligned_cols=41  Identities=17%  Similarity=0.183  Sum_probs=36.5

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ..+|||+|||+|.++..++++.+..+++++|+ +.+++.+++
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~  106 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKR  106 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence            46899999999999999999888889999999 889887765

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.14  E-value=9e-06  Score=73.22  Aligned_cols=40  Identities=23%  Similarity=0.472  Sum_probs=36.7

Q ss_pred             CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      .+|||+|||+|..+..++..+|+.+++++|+ +.+++.+++
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~  156 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEE  156 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence            6899999999999999999999999999999 888877664

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PLN02366 spermidine synthase

Probab=98.13  E-value=8.9e-06  Score=73.71  Aligned_cols=80  Identities=21%  Similarity=0.236  Sum_probs=59.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe--------------------E
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM--------------------W  236 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv--------------------~  236 (333)
                      .+++.+||+||||.|..+..+++..+..+++++|+ +.+++.++++          +.+                    .
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv  168 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA  168 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence            34678999999999999999986533457899999 7788887663          122                    4


Q ss_pred             EEccCChhH-------HHHHHHHHHHhCCCCcEEEEEe
Q 035738          237 ILHDWNDEH-------CLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       237 vLh~~~~~~-------~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      |+.+.+++.       ...+++.+++.|+|||.+++.-
T Consensus       169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            455554421       2468999999999999987643

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.10  E-value=2.5e-05  Score=68.20  Aligned_cols=81  Identities=14%  Similarity=0.130  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC---CC----e-----------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH---PC----M-----------------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---~g----v-----------------------  235 (333)
                      ..++.+|||||||+|..+..++...| +.+++.+|. +..++.|+++   .|    +                       
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f  145 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF  145 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence            45688999999999999999998765 689999999 7888877653   11    1                       


Q ss_pred             -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                       .++-+-..+.-..++..+.+.|+|||.+++-+.
T Consensus       146 D~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~  179 (234)
T PLN02781        146 DFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNT  179 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence             233233334456889999999999997665443

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.09  E-value=5.7e-06  Score=63.89  Aligned_cols=76  Identities=16%  Similarity=0.237  Sum_probs=56.6

Q ss_pred             CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe--------------------EEEccCC-
Q 035738          192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM--------------------WILHDWN-  242 (333)
Q Consensus       192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv--------------------~vLh~~~-  242 (333)
                      .+|||+|||+|.++..+++.. ..+++++|+ |..++.++.+       ..+                    .|+.+.| 
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            589999999999999999998 889999999 8887776542       111                    3333221 


Q ss_pred             ----------hhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          243 ----------DEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       243 ----------~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                                .+....+++++.+.|+|||.++++-+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence                      11235789999999999999988643

...

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.09  E-value=1.2e-05  Score=69.43  Aligned_cols=77  Identities=14%  Similarity=0.167  Sum_probs=57.2

Q ss_pred             CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC----C--CCe---------------------EEEccCCh
Q 035738          192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP----H--PCM---------------------WILHDWND  243 (333)
Q Consensus       192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~gv---------------------~vLh~~~~  243 (333)
                      ..+||||||.|.+...+++++|+..++|+++ ..++..+-+    .  .++                     .|.-++||
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD  129 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD  129 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence            5799999999999999999999999999998 555443322    1  132                     33334444


Q ss_pred             hH-----------HHHHHHHHHHhCCCCcEEEEEee
Q 035738          244 EH-----------CLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       244 ~~-----------~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      +.           ....|+.+.+.|+|||.|.+..-
T Consensus       130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD  165 (227)
T COG0220         130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD  165 (227)
T ss_pred             CCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence            32           13689999999999999887654

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.02  E-value=2.4e-05  Score=57.88  Aligned_cols=72  Identities=19%  Similarity=0.305  Sum_probs=53.3

Q ss_pred             eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC----CC--CC------------------e------EEEccC
Q 035738          193 QLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP----PH--PC------------------M------WILHDW  241 (333)
Q Consensus       193 ~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~--~g------------------v------~vLh~~  241 (333)
                      +++|+|||+|..+..+++ .+..+++++|. +..++.++    ..  ..                  .      .+++.+
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~   79 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence            589999999999999988 77889999998 66655444    10  00                  0      222221


Q ss_pred             ChhHHHHHHHHHHHhCCCCcEEEEE
Q 035738          242 NDEHCLKLLKNCYKSIPEDGKVIAV  266 (333)
Q Consensus       242 ~~~~~~~lL~~~~~~L~pgG~l~i~  266 (333)
                       .+....+++.+.+.|+|||.+++.
T Consensus        80 -~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          80 -VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence             345678999999999999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.98  E-value=3.5e-05  Score=66.25  Aligned_cols=83  Identities=11%  Similarity=0.134  Sum_probs=57.1

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------  235 (333)
                      .++..+. ..+..+|||||||+|..+..+++...  +++++|. +.+++.++++      .++                 
T Consensus        69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  145 (212)
T PRK00312         69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF  145 (212)
T ss_pred             HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence            3444444 66778999999999999987777653  7899998 7777766542      122                 


Q ss_pred             -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                       .|+-+.   .+..+.+.+.+.|+|||++++.-.
T Consensus       146 D~I~~~~---~~~~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        146 DRILVTA---AAPEIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             CEEEEcc---CchhhhHHHHHhcCCCcEEEEEEc
Confidence             111111   123567888999999999888644

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=97.96  E-value=7.7e-05  Score=66.85  Aligned_cols=40  Identities=23%  Similarity=0.427  Sum_probs=37.5

Q ss_pred             eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          193 QLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       193 ~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      +|||+|||+|..+..++.++|++++++.|+ |.+++.|+++
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~N  153 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAREN  153 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHH
Confidence            899999999999999999999999999999 8899888764

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.95  E-value=2.4e-05  Score=68.39  Aligned_cols=112  Identities=13%  Similarity=0.218  Sum_probs=81.1

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHH-HCCCCeEEEeec-hhHhhhCCCC------C-Ce--------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITT-KYPYIKGINFDL-PHVIEHVPPH------P-CM--------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~------~-gv--------------  235 (333)
                      ..++..++ ..++.+|||.|.|+|.++..|+. -.|.-+++.+|. ++..+.|+++      . .+              
T Consensus        30 ~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~  108 (247)
T PF08704_consen   30 SYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE  108 (247)
T ss_dssp             HHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred             HHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence            34555565 88999999999999999999996 578899999998 7888777653      1 11              


Q ss_pred             -------EEEccCChhHHHHHHHHHHHhC-CCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHH
Q 035738          236 -------WILHDWNDEHCLKLLKNCYKSI-PEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMT  307 (333)
Q Consensus       236 -------~vLh~~~~~~~~~lL~~~~~~L-~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~  307 (333)
                             .|+=|++++.  ..+..+.++| +|||++.+.-++...                             .....+
T Consensus       109 ~~~~~~DavfLDlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ieQ-----------------------------v~~~~~  157 (247)
T PF08704_consen  109 ELESDFDAVFLDLPDPW--EAIPHAKRALKKPGGRICCFSPCIEQ-----------------------------VQKTVE  157 (247)
T ss_dssp             T-TTSEEEEEEESSSGG--GGHHHHHHHE-EEEEEEEEEESSHHH-----------------------------HHHHHH
T ss_pred             cccCcccEEEEeCCCHH--HHHHHHHHHHhcCCceEEEECCCHHH-----------------------------HHHHHH
Confidence                   5666778777  8999999999 899999998875431                             123355


Q ss_pred             HHHhCCCCeeEEeec
Q 035738          308 LATGAGFSGISCERA  322 (333)
Q Consensus       308 ll~~aGf~~~~~~~~  322 (333)
                      .|++.||..+++..+
T Consensus       158 ~L~~~gf~~i~~~Ev  172 (247)
T PF08704_consen  158 ALREHGFTDIETVEV  172 (247)
T ss_dssp             HHHHTTEEEEEEEEE
T ss_pred             HHHHCCCeeeEEEEE
Confidence            667789988877654

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.92  E-value=2.1e-05  Score=67.76  Aligned_cols=111  Identities=18%  Similarity=0.175  Sum_probs=78.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC--CC--------C--------Ce-------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP--PH--------P--------CM-------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--~~--------~--------gv-------------  235 (333)
                      .....+||+.|||.|.-+..|+++  +.+++++|+ +.+++.+.  ..        .        +|             
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~  112 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE  112 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence            556789999999999999999986  358999999 77887751  10        0        11             


Q ss_pred             -----------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCC--cCCH
Q 035738          236 -----------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGK--ERTR  302 (333)
Q Consensus       236 -----------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~--~rt~  302 (333)
                                 .+|+-++++...+..+.+.+.|+|||+++++....+....                    .|.  ..+.
T Consensus       113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~--------------------~GPPf~v~~  172 (218)
T PF05724_consen  113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM--------------------EGPPFSVTE  172 (218)
T ss_dssp             CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS--------------------SSSS----H
T ss_pred             hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC--------------------CCcCCCCCH
Confidence                       4566778888999999999999999996555554332110                    121  2357


Q ss_pred             HHHHHHHHhCCCCeeEEee
Q 035738          303 HEFMTLATGAGFSGISCER  321 (333)
Q Consensus       303 ~e~~~ll~~aGf~~~~~~~  321 (333)
                      +++.+++. .+|++..+..
T Consensus       173 ~ev~~l~~-~~f~i~~l~~  190 (218)
T PF05724_consen  173 EEVRELFG-PGFEIEELEE  190 (218)
T ss_dssp             HHHHHHHT-TTEEEEEEEE
T ss_pred             HHHHHHhc-CCcEEEEEec
Confidence            89999998 8888776654

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>TIGR00417 speE spermidine synthase

Probab=97.91  E-value=2.9e-05  Score=69.37  Aligned_cols=78  Identities=28%  Similarity=0.354  Sum_probs=57.3

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EEE
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WIL  238 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~vL  238 (333)
                      +++.+||+||||+|..+..+++..+..+++++|+ +.+++.++++          +.+                   .|+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            3556999999999999999988766678999999 7887776642          111                   222


Q ss_pred             ccCCh-----hH--HHHHHHHHHHhCCCCcEEEEE
Q 035738          239 HDWND-----EH--CLKLLKNCYKSIPEDGKVIAV  266 (333)
Q Consensus       239 h~~~~-----~~--~~~lL~~~~~~L~pgG~l~i~  266 (333)
                      .+.++     ..  ..+.++.+++.|+|||.+++.
T Consensus       151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            22221     11  347889999999999999886

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.89  E-value=7.7e-05  Score=64.76  Aligned_cols=119  Identities=15%  Similarity=0.192  Sum_probs=75.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------C------Ce----EEEccCChhHHHH
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------P------CM----WILHDWNDEHCLK  248 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~------gv----~vLh~~~~~~~~~  248 (333)
                      +..++||||.|-|..+..++..+.++.+  -+. +.|....++.          .      ++    |+|-...++.  .
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~a--TE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~--~  169 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYA--TEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPL--T  169 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEe--ecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCHH--H
Confidence            4678999999999999999999987444  466 5666555432          0      11    5665545554  8


Q ss_pred             HHHHHHHhCCCCcEEEEEeeecC-----CCC--CCccccccccchhhHHHhhCCCCC--cCCHHHHHHHHHhCCCCeeEE
Q 035738          249 LLKNCYKSIPEDGKVIAVELMLP-----EVP--NTSIESKSNSDSDVLMMIQSPGGK--ERTRHEFMTLATGAGFSGISC  319 (333)
Q Consensus       249 lL~~~~~~L~pgG~l~i~e~~~~-----~~~--~~~~~~~~~~~~d~~m~~~~~~g~--~rt~~e~~~ll~~aGf~~~~~  319 (333)
                      +|+.++++|+|+|++++.=-..-     ...  ..++.+    .++  +     .|.  +-..+.+.+.|+.+||++++.
T Consensus       170 LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e----~l~--~-----~g~~~E~~v~~l~~v~~p~GF~v~~~  238 (265)
T PF05219_consen  170 LLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSE----LLP--V-----KGATFEEQVSSLVNVFEPAGFEVERW  238 (265)
T ss_pred             HHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchh----hcC--C-----CCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence            99999999999998877543221     111  000001    011  0     121  112334458899999999998


Q ss_pred             eecC
Q 035738          320 ERAI  323 (333)
Q Consensus       320 ~~~~  323 (333)
                      ...+
T Consensus       239 tr~P  242 (265)
T PF05219_consen  239 TRLP  242 (265)
T ss_pred             eccC
Confidence            7765

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=97.88  E-value=5.8e-05  Score=71.96  Aligned_cols=87  Identities=16%  Similarity=0.181  Sum_probs=62.5

Q ss_pred             hhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC--e--------------------E
Q 035738          183 ESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC--M--------------------W  236 (333)
Q Consensus       183 ~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g--v--------------------~  236 (333)
                      ..++ ..++.+|||+|||+|..+..+++..++.+++++|+ +.+++.++++   .|  +                    .
T Consensus       238 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~  316 (427)
T PRK10901        238 TLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDR  316 (427)
T ss_pred             HHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCE
Confidence            3444 55678999999999999999999988789999999 7777665432   00  0                    2


Q ss_pred             EEcc------------------CChhH-------HHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          237 ILHD------------------WNDEH-------CLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       237 vLh~------------------~~~~~-------~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                      |+-+                  ..+++       ..++|+++.+.|+|||++++.....
T Consensus       317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  375 (427)
T PRK10901        317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI  375 (427)
T ss_pred             EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            2211                  11111       2379999999999999999877533

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=97.86  E-value=8.6e-05  Score=61.45  Aligned_cols=50  Identities=10%  Similarity=0.298  Sum_probs=39.9

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ..+++.++ ..+..+|||||||+|.++..++++  ..+++++|+ +.+++.+++
T Consensus         3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~   53 (169)
T smart00650        3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLRE   53 (169)
T ss_pred             HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHH
Confidence            34555555 667789999999999999999988  468999999 778776654

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.85  E-value=8.8e-05  Score=67.66  Aligned_cols=87  Identities=14%  Similarity=0.187  Sum_probs=58.5

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC------CCeEEEc-cC----C----
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH------PCMWILH-DW----N----  242 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~gv~vLh-~~----~----  242 (333)
                      .++..++ ..+..+|||||||+|.++..+++..+. .+++++|. +.+++.|++.      .++.+.+ +.    .    
T Consensus        71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~  149 (322)
T PRK13943         71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP  149 (322)
T ss_pred             HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence            3444444 667789999999999999999998864 57899999 7887766542      1221111 10    0    


Q ss_pred             ------hhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738          243 ------DEHCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       243 ------~~~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                            +..+..+...+.+.|+|||++++..
T Consensus       150 fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        150 YDVIFVTVGVDEVPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             ccEEEECCchHHhHHHHHHhcCCCCEEEEEe
Confidence                  0011245667788999999988854

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=97.84  E-value=4.7e-05  Score=72.57  Aligned_cols=90  Identities=12%  Similarity=0.166  Sum_probs=64.5

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CCe---------------------
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PCM---------------------  235 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~gv---------------------  235 (333)
                      +...++ ..++.+|||+|||+|..+..+++..++.+++++|+ +..++.++++   .|+                     
T Consensus       230 ~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~  308 (426)
T TIGR00563       230 VATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE  308 (426)
T ss_pred             HHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccc
Confidence            333444 55678999999999999999999888889999999 7777655422   010                     


Q ss_pred             --------------EEEccCCh-------hH-------HHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738          236 --------------WILHDWND-------EH-------CLKLLKNCYKSIPEDGKVIAVELMLP  271 (333)
Q Consensus       236 --------------~vLh~~~~-------~~-------~~~lL~~~~~~L~pgG~l~i~e~~~~  271 (333)
                                    .+++..++       ++       ..++|+++.+.|+|||+++.......
T Consensus       309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~  372 (426)
T TIGR00563       309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL  372 (426)
T ss_pred             ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence                          12222221       11       24799999999999999999887553

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.82  E-value=2e-05  Score=72.06  Aligned_cols=132  Identities=17%  Similarity=0.116  Sum_probs=80.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------------C-----------------------
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------------P-----------------------  233 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~-----------------------  233 (333)
                      +..+|||+|||.|.=+........ -+++++|+ +..++.|+++            .                       
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            678999999999998888777543 46899999 6777766531            0                       


Q ss_pred             -C-----e----EEEccC--ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC-----------CCC---c----------
Q 035738          234 -C-----M----WILHDW--NDEHCLKLLKNCYKSIPEDGKVIAVELMLPEV-----------PNT---S----------  277 (333)
Q Consensus       234 -g-----v----~vLh~~--~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~-----------~~~---~----------  277 (333)
                       +     +    ..||+.  +++.+..+|+++.+.|+|||+++.+-+....-           ...   +          
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~  220 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSD  220 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCC
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEeccc
Confidence             0     0    556753  56677889999999999999999887732110           000   0          


Q ss_pred             -cccccccchhhHHHhhCCCCC--cCCHHHHHHHHHhCCCCeeEEeec
Q 035738          278 -IESKSNSDSDVLMMIQSPGGK--ERTRHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       278 -~~~~~~~~~d~~m~~~~~~g~--~rt~~e~~~ll~~aGf~~~~~~~~  322 (333)
                       ....+...+.+.+.....+-.  ....+.+.+++++.||+.+.....
T Consensus       221 ~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F  268 (331)
T PF03291_consen  221 DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNF  268 (331)
T ss_dssp             SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEH
T ss_pred             CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCCh
Confidence             001122222222221110111  125789999999999998876554

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PLN02476 O-methyltransferase

Probab=97.81  E-value=0.00041  Score=61.70  Aligned_cols=82  Identities=10%  Similarity=0.106  Sum_probs=62.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC---CCe---------------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH---PCM---------------------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---~gv---------------------------  235 (333)
                      ..++.+|||||+++|..+..++...| +.+++.+|. +...+.|+++   .|+                           
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F  195 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY  195 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence            55789999999999999999998875 668899999 7788877654   221                           


Q ss_pred             -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                       .++-+-+...-...++.+.+.|+|||.|++-+..
T Consensus       196 D~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL  230 (278)
T PLN02476        196 DFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVL  230 (278)
T ss_pred             CEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence             3333444455678899999999999986664443

>PLN02672 methionine S-methyltransferase

Probab=97.78  E-value=0.00012  Score=76.08  Aligned_cols=40  Identities=25%  Similarity=0.297  Sum_probs=36.3

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP  230 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~  230 (333)
                      ..+|||+|||+|..+..+++++|+.+++++|+ |.+++.|+
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~  159 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAW  159 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence            46899999999999999999999999999999 88887763

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.75  E-value=0.00011  Score=66.83  Aligned_cols=42  Identities=14%  Similarity=0.199  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ...++||||||+|.....++.+.++.+++++|+ +.+++.|++
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~  156 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQA  156 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Confidence            467999999999999999988899999999999 888888765

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.74  E-value=3.9e-05  Score=64.89  Aligned_cols=80  Identities=14%  Similarity=0.179  Sum_probs=57.7

Q ss_pred             CCCCeEEEEcCCccH----HHHHHHHH----CC-CCeEEEeec-hhHhhhCCCC----------C------------C--
Q 035738          189 DNIKQLVDVGGGIGV----TLQAITTK----YP-YIKGINFDL-PHVIEHVPPH----------P------------C--  234 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~----~~~~l~~~----~p-~~~~~~~D~-~~~~~~a~~~----------~------------g--  234 (333)
                      .+..+|...||+||.    +++.+.+.    .+ +.++++.|+ +.+++.|++-          |            +  
T Consensus        30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~  109 (196)
T PF01739_consen   30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG  109 (196)
T ss_dssp             -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred             CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence            367899999999996    33333341    22 467899999 8899988741          0            0  


Q ss_pred             --e-------------------------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          235 --M-------------------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       235 --v-------------------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                        |                               +||-+++++...+++++++++|+|||.|++-..
T Consensus       110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s  176 (196)
T PF01739_consen  110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS  176 (196)
T ss_dssp             TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred             eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence              0                               788899999999999999999999999998654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.72  E-value=0.00049  Score=59.62  Aligned_cols=134  Identities=12%  Similarity=0.050  Sum_probs=75.3

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhh-hCCCCCCe------EE-------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIE-HVPPHPCM------WI-------------  237 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~-~a~~~~gv------~v-------------  237 (333)
                      ..+++.++..-...++||+|||+|.++..+++. +..+++++|. +.++. ..++++.+      ++             
T Consensus        64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~  142 (228)
T TIGR00478        64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFA  142 (228)
T ss_pred             HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCce
Confidence            345555541235679999999999999999986 4467999999 54544 34444332      11             


Q ss_pred             EccCChhHHHHHHHHHHHhCCCCcEEE-EEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCe
Q 035738          238 LHDWNDEHCLKLLKNCYKSIPEDGKVI-AVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSG  316 (333)
Q Consensus       238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~-i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~  316 (333)
                      -+|.+=--...+|..+.+.|+| |.++ ++.+-..-.+..  ...-....|-..       ...-.+++..++.+.||++
T Consensus       143 ~~DvsfiS~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~--~~~~giv~~~~~-------~~~~~~~~~~~~~~~~~~~  212 (228)
T TIGR00478       143 TFDVSFISLISILPELDLLLNP-NDLTLLFKPQFEAGREK--KNKKGVVRDKEA-------IALALHKVIDKGESPDFQE  212 (228)
T ss_pred             eeeEEEeehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhh--cCcCCeecCHHH-------HHHHHHHHHHHHHcCCCeE
Confidence            1111101123579999999999 5444 443322221100  000000001000       1112567778888899998


Q ss_pred             eEEeecC
Q 035738          317 ISCERAI  323 (333)
Q Consensus       317 ~~~~~~~  323 (333)
                      ..+.+.+
T Consensus       213 ~~~~~s~  219 (228)
T TIGR00478       213 KKIIFSL  219 (228)
T ss_pred             eeEEECC
Confidence            8887654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.71  E-value=0.00013  Score=65.11  Aligned_cols=78  Identities=28%  Similarity=0.439  Sum_probs=65.2

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EEE
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WIL  238 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~vL  238 (333)
                      +++++||-||||.|.++.++++..+--+++.+|+ |.+++.++++          |.+                   -|+
T Consensus        75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi  154 (282)
T COG0421          75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII  154 (282)
T ss_pred             CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence            3457999999999999999999999889999999 8999999875          111                   666


Q ss_pred             ccCChhH-------HHHHHHHHHHhCCCCcEEEEE
Q 035738          239 HDWNDEH-------CLKLLKNCYKSIPEDGKVIAV  266 (333)
Q Consensus       239 h~~~~~~-------~~~lL~~~~~~L~pgG~l~i~  266 (333)
                      .+.+|+.       -...++.|+++|+++|.++..
T Consensus       155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         155 VDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             EcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            7766651       247999999999999999988

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.69  E-value=0.00035  Score=62.56  Aligned_cols=79  Identities=11%  Similarity=0.123  Sum_probs=59.9

Q ss_pred             CCCeEEEEcCCccH----HHHHHHHHCC----CCeEEEeec-hhHhhhCCCC--C------------------------C
Q 035738          190 NIKQLVDVGGGIGV----TLQAITTKYP----YIKGINFDL-PHVIEHVPPH--P------------------------C  234 (333)
Q Consensus       190 ~~~~vlDVGgG~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~--~------------------------g  234 (333)
                      +..+|...||+||.    .++.+.+..+    ++++++.|+ +.+++.|++-  +                        +
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            34799999999996    3334444432    467899999 7888887641  0                        1


Q ss_pred             ---e--------------------------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          235 ---M--------------------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       235 ---v--------------------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                         |                                ++|.+++++...+++++++++|+|||.|++-..
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s  263 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS  263 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence               1                                788888888889999999999999998776543

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=97.69  E-value=0.00017  Score=69.20  Aligned_cols=44  Identities=14%  Similarity=0.112  Sum_probs=37.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ..+..+|||+|||+|..+..+++.. ++.+++++|+ +..++.+++
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~  293 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEE  293 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence            5567899999999999999999876 6789999999 777766543

>PRK00536 speE spermidine synthase; Provisional

Probab=97.68  E-value=0.00012  Score=64.46  Aligned_cols=77  Identities=12%  Similarity=0.072  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe---------------EEEccC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM---------------WILHDW  241 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv---------------~vLh~~  241 (333)
                      -.++.+||-||||-|..++++++. |. +++.+|+ +.|++.++++          |.+               -|+.+-
T Consensus        70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs  147 (262)
T PRK00536         70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQ  147 (262)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcC
Confidence            357899999999999999999996 54 9999999 7899988874          222               444553


Q ss_pred             ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          242 NDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       242 ~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      +.+  ....+.++++|+|||.++..-.
T Consensus       148 ~~~--~~fy~~~~~~L~~~Gi~v~Qs~  172 (262)
T PRK00536        148 EPD--IHKIDGLKRMLKEDGVFISVAK  172 (262)
T ss_pred             CCC--hHHHHHHHHhcCCCcEEEECCC
Confidence            333  2688999999999999888653

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=9.4e-05  Score=62.43  Aligned_cols=87  Identities=10%  Similarity=0.262  Sum_probs=59.7

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCeEEEc-----cCChh--
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCMWILH-----DWNDE--  244 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv~vLh-----~~~~~--  244 (333)
                      ..++..+. .++..+|||||||+|..+.-+++--.  +++.+++ +...+.|+++      .+|.+.|     -|+..  
T Consensus        62 A~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP  138 (209)
T COG2518          62 ARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP  138 (209)
T ss_pred             HHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence            34556666 88899999999999999999888765  7888898 7888888763      2331111     11110  


Q ss_pred             --------HHHHHHHHHHHhCCCCcEEEEEee
Q 035738          245 --------HCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       245 --------~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                              .+..+=+.+.+-|+|||++++-.-
T Consensus       139 yD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         139 YDRIIVTAAAPEVPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             cCEEEEeeccCCCCHHHHHhcccCCEEEEEEc
Confidence                    011233455578999999999877

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.66  E-value=0.00046  Score=61.06  Aligned_cols=79  Identities=14%  Similarity=0.162  Sum_probs=65.0

Q ss_pred             CCCeEEEEcCCccH----HHHHHHHHCC-----CCeEEEeec-hhHhhhCCCC--C------Ce----------------
Q 035738          190 NIKQLVDVGGGIGV----TLQAITTKYP-----YIKGINFDL-PHVIEHVPPH--P------CM----------------  235 (333)
Q Consensus       190 ~~~~vlDVGgG~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~--~------gv----------------  235 (333)
                      +..+|.-.||+||.    .++.+.+.+|     .+++++.|+ ..+++.|+.-  +      ++                
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            57899999999995    6666777776     478899999 7899988751  1      00                


Q ss_pred             ----------------------------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          236 ----------------------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 ----------------------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                                                        |||-+++.+.-.+++++.+..|+|||.|++=..
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s  242 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS  242 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence                                              888889988888999999999999999998654

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.65  E-value=0.0004  Score=59.98  Aligned_cols=81  Identities=7%  Similarity=0.020  Sum_probs=64.1

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC----------------CC--C--------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP----------------HP--C--------------  234 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~--g--------------  234 (333)
                      ..+..+||+.|||.|.-+..|++..  .+++++|+ +..++.+.+                +.  +              
T Consensus        41 ~~~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~  118 (226)
T PRK13256         41 INDSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI  118 (226)
T ss_pred             CCCCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence            3456799999999999999998864  46999999 777776411                00  0              


Q ss_pred             ------e------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          235 ------M------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       235 ------v------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                            +      .+|+.++++...+..+.+.+.|+|||+++++....
T Consensus       119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~  166 (226)
T PRK13256        119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH  166 (226)
T ss_pred             ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence                  0      66777888889999999999999999999987643

>PLN02823 spermine synthase

Probab=97.65  E-value=0.00017  Score=66.15  Aligned_cols=78  Identities=19%  Similarity=0.253  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EEE
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WIL  238 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~vL  238 (333)
                      .++.+||.||||.|..+..+++..+..+++++|+ |.+++.++++          +.+                   -|+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            3578999999999999999998776778999999 8899988754          122                   556


Q ss_pred             ccCChhH---------HHHHHH-HHHHhCCCCcEEEEE
Q 035738          239 HDWNDEH---------CLKLLK-NCYKSIPEDGKVIAV  266 (333)
Q Consensus       239 h~~~~~~---------~~~lL~-~~~~~L~pgG~l~i~  266 (333)
                      .+.+++.         -.+.++ .+++.|+|||.+++.
T Consensus       182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            6655431         236787 899999999987764

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.65  E-value=9.9e-05  Score=71.73  Aligned_cols=37  Identities=16%  Similarity=0.225  Sum_probs=32.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHh
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVI  226 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~  226 (333)
                      ....+||||||.|.++..+++.+|+..++|+|. ...+
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~  384 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGV  384 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHH
Confidence            456899999999999999999999999999998 4433

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=97.64  E-value=0.00031  Score=67.33  Aligned_cols=52  Identities=12%  Similarity=0.141  Sum_probs=40.9

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ...+++.+. .....+|||+|||+|.++..+++..  .+++++|+ +.+++.|+++
T Consensus       286 ~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n  338 (443)
T PRK13168        286 VARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERAREN  338 (443)
T ss_pred             HHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHH
Confidence            344444444 4566799999999999999999876  57999999 8899888764

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.64  E-value=0.00024  Score=60.79  Aligned_cols=84  Identities=12%  Similarity=0.206  Sum_probs=67.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC---CCe-------------------------EE
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH---PCM-------------------------WI  237 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---~gv-------------------------~v  237 (333)
                      ..++.+||+||.+.|..+..++...| +.+.|.+|. |+.++.|+++   .|+                         .|
T Consensus        57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli  136 (219)
T COG4122          57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV  136 (219)
T ss_pred             hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence            56889999999999999999999999 889999999 8899988875   221                         45


Q ss_pred             EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738          238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLP  271 (333)
Q Consensus       238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~  271 (333)
                      +-+-...+-.+.|..+.+.|+|||.+++-+...+
T Consensus       137 FIDadK~~yp~~le~~~~lLr~GGliv~DNvl~~  170 (219)
T COG4122         137 FIDADKADYPEYLERALPLLRPGGLIVADNVLFG  170 (219)
T ss_pred             EEeCChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence            5555555567899999999999987665554443

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=97.64  E-value=7.3e-05  Score=63.75  Aligned_cols=83  Identities=14%  Similarity=0.266  Sum_probs=64.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC---CC----e-----------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH---PC----M-----------------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---~g----v-----------------------  235 (333)
                      ..++.+||+||+++|..+..+++..| +.+++.+|. |...+.|+++   .|    +                       
T Consensus        43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f  122 (205)
T PF01596_consen   43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF  122 (205)
T ss_dssp             HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred             hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence            34688999999999999999999887 589999999 7788777653   11    1                       


Q ss_pred             -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                       .|+-+-...+-...+..+.+.|+|||.|++-+...
T Consensus       123 D~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~  158 (205)
T PF01596_consen  123 DFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLW  158 (205)
T ss_dssp             EEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred             eEEEEcccccchhhHHHHHhhhccCCeEEEEccccc
Confidence             56666666777889999999999988766655543

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.60  E-value=0.00025  Score=64.50  Aligned_cols=87  Identities=10%  Similarity=0.153  Sum_probs=63.0

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC----CCCeEEEeec-hhHhhhCCC------CCCe------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKY----PYIKGINFDL-PHVIEHVPP------HPCM------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~------~~gv------------  235 (333)
                      .++...++   ...+|+|+|||+|.-...|+++.    ...+++.+|+ .+.++.+.+      +|.+            
T Consensus        68 ~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~  144 (319)
T TIGR03439        68 SDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG  144 (319)
T ss_pred             HHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence            34555443   55689999999999877776655    3467899999 456654422      2221            


Q ss_pred             --------------------EEEccCChhHHHHHHHHHHH-hCCCCcEEEE-Eee
Q 035738          236 --------------------WILHDWNDEHCLKLLKNCYK-SIPEDGKVIA-VEL  268 (333)
Q Consensus       236 --------------------~vLh~~~~~~~~~lL~~~~~-~L~pgG~l~i-~e~  268 (333)
                                          ..+.+++++++..+|+++++ .|+||+.++| +|.
T Consensus       145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~  199 (319)
T TIGR03439       145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDG  199 (319)
T ss_pred             HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence                                56778899999999999999 9999987776 344

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=97.56  E-value=0.00028  Score=67.73  Aligned_cols=84  Identities=15%  Similarity=0.154  Sum_probs=60.4

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------CCe-----------------EEEcc--
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------PCM-----------------WILHD--  240 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~gv-----------------~vLh~--  240 (333)
                      ...+.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++      .++                 .|+-+  
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P  327 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP  327 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence            44668999999999999998888654 468999999 8888766542      111                 23321  


Q ss_pred             ----------------CChhHH-------HHHHHHHHHhCCCCcEEEEEeeecC
Q 035738          241 ----------------WNDEHC-------LKLLKNCYKSIPEDGKVIAVELMLP  271 (333)
Q Consensus       241 ----------------~~~~~~-------~~lL~~~~~~L~pgG~l~i~e~~~~  271 (333)
                                      +++++.       .++|+++.+.|+|||+++.......
T Consensus       328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~  381 (445)
T PRK14904        328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE  381 (445)
T ss_pred             CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence                            222221       3689999999999999999876543

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.54  E-value=7.9e-05  Score=63.72  Aligned_cols=87  Identities=13%  Similarity=0.239  Sum_probs=57.0

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC------CCe--------------
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH------PCM--------------  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~gv--------------  235 (333)
                      ...++..+. +.+..+|||||||+|..+..++... +.-+++.+|. +..++.|+++      .+|              
T Consensus        61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~  139 (209)
T PF01135_consen   61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE  139 (209)
T ss_dssp             HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred             HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence            345666666 8889999999999999999998864 4456889998 8888887753      122              


Q ss_pred             ----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                          .|+-...-+   ++=....+.|++||++++--.
T Consensus       140 apfD~I~v~~a~~---~ip~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  140 APFDRIIVTAAVP---EIPEALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             -SEEEEEESSBBS---S--HHHHHTEEEEEEEEEEES
T ss_pred             CCcCEEEEeeccc---hHHHHHHHhcCCCcEEEEEEc
Confidence                222221111   233456677999999998554

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=97.54  E-value=0.00037  Score=62.06  Aligned_cols=83  Identities=14%  Similarity=0.211  Sum_probs=59.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------CCe------------------EEEcc-
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------PCM------------------WILHD-  240 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~gv------------------~vLh~-  240 (333)
                      ..++.+|||+|||+|..+..+++... ..+++.+|+ +..++.++++      .++                  .||-+ 
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~  148 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA  148 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence            45678999999999999999988765 358999999 7777665432      111                  23322 


Q ss_pred             -----------------CChhHH-------HHHHHHHHHhCCCCcEEEEEeeec
Q 035738          241 -----------------WNDEHC-------LKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       241 -----------------~~~~~~-------~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                                       |+++..       .++|+++.+.|+|||+|+......
T Consensus       149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~  202 (264)
T TIGR00446       149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL  202 (264)
T ss_pred             CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence                             333222       469999999999999987665433

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=97.52  E-value=0.00014  Score=65.03  Aligned_cols=50  Identities=10%  Similarity=0.246  Sum_probs=40.7

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ..+++.++ .....+|||||||+|.++..++++.+  +++++|+ +.+++.+++
T Consensus        32 ~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~   82 (272)
T PRK00274         32 DKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAE   82 (272)
T ss_pred             HHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHH
Confidence            34555555 66778999999999999999999976  7899999 888887754

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=97.46  E-value=0.00058  Score=65.12  Aligned_cols=83  Identities=20%  Similarity=0.260  Sum_probs=59.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC------CCe-------------------EEEcc
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH------PCM-------------------WILHD  240 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~gv-------------------~vLh~  240 (333)
                      ..++.+|||+|||+|..+..++... +..+++.+|+ +..++.++++      .++                   .||-+
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D  314 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD  314 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence            5677899999999999999999876 5678999999 7888766542      111                   22221


Q ss_pred             ------------------CChhH-------HHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          241 ------------------WNDEH-------CLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       241 ------------------~~~~~-------~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                                        ++.++       -.++|.++.+.|+|||+++......
T Consensus       315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence                              11111       1478999999999999977666544

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.42  E-value=0.00023  Score=59.94  Aligned_cols=40  Identities=20%  Similarity=0.385  Sum_probs=33.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ...-|||||||+|..+..+...-  -..+++|+ |.|++.|.+
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~   90 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVE   90 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHH
Confidence            57889999999999988776644  56899999 999998863

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.42  E-value=0.00092  Score=59.15  Aligned_cols=50  Identities=14%  Similarity=0.296  Sum_probs=39.7

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ..+++.++ ..+..+|||||||+|.++..++++++.  ++++|. +.+++.+++
T Consensus        19 ~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~   69 (253)
T TIGR00755        19 QKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRK   69 (253)
T ss_pred             HHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHH
Confidence            45555555 667789999999999999999999864  888898 777766543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=97.39  E-value=0.00046  Score=65.98  Aligned_cols=43  Identities=9%  Similarity=-0.041  Sum_probs=35.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVP  230 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~  230 (333)
                      ..++.+|||+|||+|..+..+++... ..+++++|+ +..++.++
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~  294 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQ  294 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHH
Confidence            55678999999999999999998754 568999999 77776554

>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=97.33  E-value=0.00012  Score=47.75  Aligned_cols=46  Identities=30%  Similarity=0.416  Sum_probs=40.0

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +.|++.|.+.+  ++.|+.|||+++|+    +..-+.|+|+.|+..|++.++
T Consensus         6 l~iL~~l~~~~--~~~t~~eia~~~gl----~~stv~r~L~tL~~~g~v~~d   51 (52)
T PF09339_consen    6 LRILEALAESG--GPLTLSEIARALGL----PKSTVHRLLQTLVEEGYVERD   51 (52)
T ss_dssp             HHHHHCHHCTB--SCEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEC
T ss_pred             HHHHHHHHcCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCcCeecC
Confidence            45788888764  57899999999999    999999999999999999985

One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.33  E-value=0.0036  Score=53.07  Aligned_cols=108  Identities=14%  Similarity=0.150  Sum_probs=75.5

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-------C-------Ce----EEEccCChh-HHHHHHH
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH-------P-------CM----WILHDWNDE-HCLKLLK  251 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~-------gv----~vLh~~~~~-~~~~lL~  251 (333)
                      ..++|||||=+......   .++-+.++-+|+-...+...+.       |       ++    -||.+.|++ +.-++|+
T Consensus        52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~  128 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLR  128 (219)
T ss_pred             cceEEeecccCCCCccc---ccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHH
Confidence            47999999875554433   3556678888983222222211       1       12    788888855 5669999


Q ss_pred             HHHHhCCCCcE-----EEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecC
Q 035738          252 NCYKSIPEDGK-----VIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAI  323 (333)
Q Consensus       252 ~~~~~L~pgG~-----l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~  323 (333)
                      ++.+.|+|+|.     ++|+-+..                      |..|.+..+.+.|.++++..||..++.....
T Consensus       129 r~~~fL~~~g~~~~~~LFlVlP~~----------------------Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~  183 (219)
T PF11968_consen  129 RAHKFLKPPGLSLFPSLFLVLPLP----------------------CVTNSRYMTEERLREIMESLGFTRVKYKKSK  183 (219)
T ss_pred             HHHHHhCCCCccCcceEEEEeCch----------------------HhhcccccCHHHHHHHHHhCCcEEEEEEecC
Confidence            99999999999     66664411                      1237777789999999999999998876553

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=97.30  E-value=0.00047  Score=61.40  Aligned_cols=80  Identities=19%  Similarity=0.210  Sum_probs=59.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeech-hHhhhCCCC-------------C--------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLP-HVIEHVPPH-------------P--------------------  233 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~-------------~--------------------  233 (333)
                      .++...++|+|||-|.-+...-++.- -.++++|++ ..++.|++.             +                    
T Consensus       115 ~~~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~  193 (389)
T KOG1975|consen  115 TKRGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK  193 (389)
T ss_pred             hccccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence            45677899999999988887665442 257999994 557777642             0                    


Q ss_pred             ----Ce----EEEcc-C-ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          234 ----CM----WILHD-W-NDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       234 ----gv----~vLh~-~-~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                          ++    +++|+ | +.+.+..+|+++.+.|+|||.++-+-+
T Consensus       194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP  238 (389)
T KOG1975|consen  194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP  238 (389)
T ss_pred             CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence                01    77885 3 566778899999999999999887655

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.22  E-value=0.0032  Score=50.92  Aligned_cols=91  Identities=14%  Similarity=0.258  Sum_probs=67.4

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC-CCe-------------------
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH-PCM-------------------  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-~gv-------------------  235 (333)
                      ++.+.+.++ +..+.-||++|.|||-++.+++.+ .++-..+.++. ++......+. +++                   
T Consensus        37 A~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~g  115 (194)
T COG3963          37 ARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKG  115 (194)
T ss_pred             HHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCC
Confidence            344555566 888889999999999999999875 45566677777 6666554432 321                   


Q ss_pred             ----EE-----EccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          236 ----WI-----LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       236 ----~v-----Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                          .+     +-+++.....++|+++...|++||.++-+...
T Consensus       116 q~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963         116 QFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             CeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence                22     23456777889999999999999999988875

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=97.17  E-value=0.0024  Score=54.20  Aligned_cols=42  Identities=12%  Similarity=0.128  Sum_probs=33.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ...+|||+|||+|.++..++.+.. .+++++|. +.+++.++++
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~N   95 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKN   95 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHH
Confidence            456999999999999997666553 58999998 7887776653

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.16  E-value=0.00037  Score=57.96  Aligned_cols=80  Identities=20%  Similarity=0.315  Sum_probs=57.7

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC-------CC------CCe---------------------
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP-------PH------PCM---------------------  235 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~------~gv---------------------  235 (333)
                      .-.++|||||.|.++..|...||+.-++|.++ ..|.+..+       ..      +++                     
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs  140 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS  140 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence            35699999999999999999999999999887 56654332       11      111                     


Q ss_pred             EEEccCChhH-----------HHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          236 WILHDWNDEH-----------CLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       236 ~vLh~~~~~~-----------~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                      -.++.++|+.           +..++.+..-+|++||.++.+.-+.
T Consensus       141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~  186 (249)
T KOG3115|consen  141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK  186 (249)
T ss_pred             cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence            3334444432           2358888999999999999887644

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=97.11  E-value=0.002  Score=56.48  Aligned_cols=82  Identities=20%  Similarity=0.205  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC---CCe---------------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH---PCM---------------------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---~gv---------------------------  235 (333)
                      ..+..+||+||+++|..+..++...| +.+++.+|. +...+.|+++   .|+                           
T Consensus        77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~  156 (247)
T PLN02589         77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT  156 (247)
T ss_pred             HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence            44678999999999999999998864 788999999 7777777653   221                           


Q ss_pred             --EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          236 --WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       236 --~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                        .|+-+-....-...++.+.+.|+|||.|++ |.+.
T Consensus       157 fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~-DNvl  192 (247)
T PLN02589        157 FDFIFVDADKDNYINYHKRLIDLVKVGGVIGY-DNTL  192 (247)
T ss_pred             ccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE-cCCC
Confidence              333333444556778888999999988555 5544

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.10  E-value=0.00046  Score=60.71  Aligned_cols=80  Identities=23%  Similarity=0.345  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe--------------------EE
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM--------------------WI  237 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv--------------------~v  237 (333)
                      +++.+||-||+|.|..+..+++..+..+++++|+ |.+++.++++          +.+                    .|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            4789999999999999999998776778999999 8899888753          222                    45


Q ss_pred             EccCChhH-------HHHHHHHHHHhCCCCcEEEEEee
Q 035738          238 LHDWNDEH-------CLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       238 Lh~~~~~~-------~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      +.+.+++.       ....++.+++.|+|||.+++.-.
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~  192 (246)
T PF01564_consen  155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG  192 (246)
T ss_dssp             EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence            55554421       24788999999999998887763

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.09  E-value=0.0026  Score=56.91  Aligned_cols=91  Identities=19%  Similarity=0.325  Sum_probs=66.1

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCC-eEEEeec-hhHhhhCCCC----C-------------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYI-KGINFDL-PHVIEHVPPH----P-------------------  233 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~----~-------------------  233 (333)
                      .++....++ -.+.+|||+|+|.|..+-++...++.+ +++.+|. +.+++.++..    +                   
T Consensus        23 ~El~~r~p~-f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  101 (274)
T PF09243_consen   23 SELRKRLPD-FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP  101 (274)
T ss_pred             HHHHHhCcC-CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC
Confidence            444444442 356799999999999998888888854 4688898 7777755431    0                   


Q ss_pred             --Ce----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738          234 --CM----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPE  272 (333)
Q Consensus       234 --gv----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~  272 (333)
                        ++    ++|-.+++....++++++-+.+.+  .|+|+|+-.+.
T Consensus       102 ~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~  144 (274)
T PF09243_consen  102 PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA  144 (274)
T ss_pred             CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence              11    777777777777888888777766  99999996554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases

Probab=97.05  E-value=0.0013  Score=45.48  Aligned_cols=60  Identities=23%  Similarity=0.289  Sum_probs=48.8

Q ss_pred             HHHhChhhHhhhcCCCC-CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738           32 VYELGIFEIIDKAGPGA-KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS  100 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g-~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~  100 (333)
                      ..+-.|+..|.+.|  + ++|+.|||+++|+    +...++|.|..|...|+|....   ..++.|.++.
T Consensus         6 ~~~~~IL~~L~~~g--~~~~ta~eLa~~lgl----~~~~v~r~L~~L~~~G~V~~~~---~~~~~W~i~~   66 (68)
T smart00550        6 SLEEKILEFLENSG--DETSTALQLAKNLGL----PKKEVNRVLYSLEKKGKVCKQG---GTPPLWKLTD   66 (68)
T ss_pred             HHHHHHHHHHHHCC--CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC---CCCCceEeec
Confidence            45667888999874  2 2999999999999    8999999999999999999862   1247787764

Helix-turn-helix-containing domain. Also known as Zab.

>PRK04148 hypothetical protein; Provisional

Probab=97.05  E-value=0.0068  Score=47.70  Aligned_cols=85  Identities=19%  Similarity=0.206  Sum_probs=53.1

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccH-HHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----------CCe-------EEEc
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGV-TLQAITTKYPYIKGINFDL-PHVIEHVPPH-----------PCM-------WILH  239 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~gv-------~vLh  239 (333)
                      .+.+.++ -.+..+++|||||+|. .+..|.+.  +..++++|+ |..++.+++.           |+.       .+..
T Consensus         7 ~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys   83 (134)
T PRK04148          7 FIAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS   83 (134)
T ss_pred             HHHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE
Confidence            3445554 3355799999999996 77777754  468999999 8888766543           111       3333


Q ss_pred             cCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          240 DWNDEHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       240 ~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                      --++.+...-+-++++..+-  -++|.-..
T Consensus        84 irpp~el~~~~~~la~~~~~--~~~i~~l~  111 (134)
T PRK04148         84 IRPPRDLQPFILELAKKINV--PLIIKPLS  111 (134)
T ss_pred             eCCCHHHHHHHHHHHHHcCC--CEEEEcCC
Confidence            34555555555566665543  35554443

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=97.02  E-value=0.0012  Score=58.59  Aligned_cols=50  Identities=18%  Similarity=0.309  Sum_probs=39.5

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ..+++.+. ..+..+|||||||+|.++..++++.  .+++++|+ +.+++.+++
T Consensus        19 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~   69 (258)
T PRK14896         19 DRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRD   69 (258)
T ss_pred             HHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHH
Confidence            44555554 5667899999999999999999984  47899999 777776654

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=96.99  E-value=0.0011  Score=55.09  Aligned_cols=81  Identities=17%  Similarity=0.202  Sum_probs=51.4

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC---------CCe-----------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH---------PCM-----------------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---------~gv-----------------------  235 (333)
                      ...+.+|||+|||+|..+..+++.++..+++.-|.+.+++..+.+         ..+                       
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~  122 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV  122 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence            446789999999999999999998777889999996676654321         111                       


Q ss_pred             ----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                          .|++  .++....+++.+.+.|+|+|.+++.-...
T Consensus       123 IlasDv~Y--~~~~~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  123 ILASDVLY--DEELFEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             EEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             EEEecccc--hHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence                2222  34455678888888888887766666644

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=96.94  E-value=0.0015  Score=58.73  Aligned_cols=54  Identities=19%  Similarity=0.156  Sum_probs=45.7

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ..++++.+. ..+...+||.+||.|.++..+++..| +.+++++|. |.+++.+++.
T Consensus         8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~   63 (296)
T PRK00050          8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDR   63 (296)
T ss_pred             HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHh
Confidence            456777765 56677999999999999999999986 789999999 8899888653

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=96.93  E-value=0.0019  Score=56.78  Aligned_cols=79  Identities=18%  Similarity=0.184  Sum_probs=59.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-C-C---------------------eEEEccCCh
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-P-C---------------------MWILHDWND  243 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~-g---------------------v~vLh~~~~  243 (333)
                      .+....++|+|||.|.+..    .+|.+..+++|+ ...+..+++. + +                     +.++|+++.
T Consensus        43 ~~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT  118 (293)
T KOG1331|consen   43 QPTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLST  118 (293)
T ss_pred             cCCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence            3457789999999998765    458888999999 5666666543 1 1                     178888764


Q ss_pred             h-HHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          244 E-HCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       244 ~-~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                      . ...++++++.+.++|||..+|.-...
T Consensus       119 ~~RR~~~l~e~~r~lrpgg~~lvyvwa~  146 (293)
T KOG1331|consen  119 RERRERALEELLRVLRPGGNALVYVWAL  146 (293)
T ss_pred             HHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence            4 45689999999999999987776643

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=96.91  E-value=0.015  Score=49.72  Aligned_cols=115  Identities=17%  Similarity=0.187  Sum_probs=81.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCC---C-----e--------------------EEE
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHP---C-----M--------------------WIL  238 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~---g-----v--------------------~vL  238 (333)
                      .+++.+|||.=.|-|.++.+.+++-. ++++-++- |.|++.|.-+|   +     +                    .++
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi  210 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII  210 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence            55789999999999999999988764 36666666 88988887652   1     1                    788


Q ss_pred             ccCC------hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhC
Q 035738          239 HDWN------DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGA  312 (333)
Q Consensus       239 h~~~------~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~a  312 (333)
                      |+-|      +-...++-+++++.|+|||+++=.--...    ..     ....|             -+....+.|+++
T Consensus       211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg----~r-----yrG~d-------------~~~gVa~RLr~v  268 (287)
T COG2521         211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG----KR-----YRGLD-------------LPKGVAERLRRV  268 (287)
T ss_pred             eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC----cc-----cccCC-------------hhHHHHHHHHhc
Confidence            8865      23356789999999999999764433211    10     11111             144678899999


Q ss_pred             CCCeeEEeecCCc
Q 035738          313 GFSGISCERAIGN  325 (333)
Q Consensus       313 Gf~~~~~~~~~~~  325 (333)
                      ||.+++......+
T Consensus       269 GF~~v~~~~~~~g  281 (287)
T COG2521         269 GFEVVKKVREALG  281 (287)
T ss_pred             Cceeeeeehhccc
Confidence            9998888766543

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=96.88  E-value=0.0038  Score=53.22  Aligned_cols=92  Identities=12%  Similarity=0.259  Sum_probs=53.5

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CC-----e--------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PC-----M--------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~g-----v--------  235 (333)
                      .+++.+. +.+...++|+|||.|......+..++--+.+|+++ +...+.|+..          .|     +        
T Consensus        33 ~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl  111 (205)
T PF08123_consen   33 KILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL  111 (205)
T ss_dssp             HHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred             HHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence            4555555 77788999999999999998887776666999998 6666544321          01     0        


Q ss_pred             -------------EEE-cc--CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 035738          236 -------------WIL-HD--WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEV  273 (333)
Q Consensus       236 -------------~vL-h~--~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~  273 (333)
                                   -|+ ++  |+++ ...-|++....||||.+|+...++.+..
T Consensus       112 ~~~~~~~~~s~AdvVf~Nn~~F~~~-l~~~L~~~~~~lk~G~~IIs~~~~~~~~  164 (205)
T PF08123_consen  112 DPDFVKDIWSDADVVFVNNTCFDPD-LNLALAELLLELKPGARIISTKPFCPRR  164 (205)
T ss_dssp             THHHHHHHGHC-SEEEE--TTT-HH-HHHHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred             ccHhHhhhhcCCCEEEEeccccCHH-HHHHHHHHHhcCCCCCEEEECCCcCCCC
Confidence                         222 22  3444 4455577778899999988877776654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation

Probab=96.88  E-value=0.0015  Score=47.92  Aligned_cols=58  Identities=19%  Similarity=0.267  Sum_probs=47.2

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccc
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV  101 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~  101 (333)
                      -+.|++.|.+.+  ++.|+.|||+.+|+    +..-+.|.|+.|...|++.+..    .++.|++++.
T Consensus         7 ~~~Il~~l~~~~--~~~t~~~ia~~l~i----~~~tv~r~l~~L~~~g~l~~~~----~~~~y~l~~~   64 (91)
T smart00346        7 GLAVLRALAEEP--GGLTLAELAERLGL----SKSTAHRLLNTLQELGYVEQDG----QNGRYRLGPK   64 (91)
T ss_pred             HHHHHHHHHhCC--CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeecC----CCCceeecHH
Confidence            356788887752  48999999999999    9999999999999999999852    2456777653

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=96.86  E-value=0.0033  Score=63.79  Aligned_cols=42  Identities=10%  Similarity=0.025  Sum_probs=35.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      +..+|||+|||+|.++..++.. ...+++.+|+ +.+++.++++
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N  580 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERN  580 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHH
Confidence            4679999999999999999985 3347999999 8888887753

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=96.85  E-value=0.0048  Score=51.52  Aligned_cols=47  Identities=23%  Similarity=0.249  Sum_probs=35.6

Q ss_pred             HHHHHhhccCCC--CCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechh
Q 035738          178 MSNILESYKGFD--NIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDLPH  224 (333)
Q Consensus       178 ~~~~~~~~~~~~--~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~~~  224 (333)
                      ..++.+.++-++  +..++||+||++|.++..++++. +..+++++|+..
T Consensus         9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~   58 (181)
T PF01728_consen    9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGP   58 (181)
T ss_dssp             HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSS
T ss_pred             HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccc
Confidence            345566665233  45899999999999999999988 778899999843

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=96.83  E-value=0.0037  Score=57.15  Aligned_cols=41  Identities=12%  Similarity=0.074  Sum_probs=35.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ...+|||+|||+|.++..+++.  ..+++++|+ +.+++.++++
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n  214 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQS  214 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHH
Confidence            3579999999999999999884  368999999 8899888754

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=96.83  E-value=0.0042  Score=58.50  Aligned_cols=43  Identities=7%  Similarity=-0.038  Sum_probs=34.0

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      .+..+|||+|||+|.++...+. ....+++.+|+ +.+++.++++
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N  262 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQN  262 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHH
Confidence            3568999999999999887654 34458999999 8888877654

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.80  E-value=0.0012  Score=54.65  Aligned_cols=42  Identities=19%  Similarity=0.334  Sum_probs=36.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ...+|+|+|||||.++...+-..|. +++++|+ |+.++.++++
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N   87 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARAN   87 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHH
Confidence            5678999999999999988776664 7899999 8999998875

>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities

Probab=96.73  E-value=0.0013  Score=41.86  Aligned_cols=44  Identities=23%  Similarity=0.371  Sum_probs=38.9

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceee
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVEC   85 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~   85 (333)
                      ++.|...|.+    ||.++.||++.+|+    ++..+.+.|+.|...|++++
T Consensus         4 R~~Il~~L~~----~~~~~~el~~~l~~----s~~~vs~hL~~L~~~glV~~   47 (47)
T PF01022_consen    4 RLRILKLLSE----GPLTVSELAEELGL----SQSTVSHHLKKLREAGLVEK   47 (47)
T ss_dssp             HHHHHHHHTT----SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHh----CCCchhhHHHhccc----cchHHHHHHHHHHHCcCeeC
Confidence            5667888888    59999999999999    99999999999999999973

One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=96.72  E-value=0.0037  Score=59.79  Aligned_cols=49  Identities=16%  Similarity=0.318  Sum_probs=39.1

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      +...+. ..+..+|||+|||+|.++..+++..  .+++++|+ +.+++.++++
T Consensus       284 ~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n  333 (431)
T TIGR00479       284 ALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQN  333 (431)
T ss_pred             HHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHH
Confidence            334333 5566799999999999999999875  37899999 8899888764

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.69  E-value=0.0012  Score=62.54  Aligned_cols=82  Identities=15%  Similarity=0.127  Sum_probs=52.7

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEe-ec-hhHhhhCCC--------------C--C-Ce-------EEEccCC
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINF-DL-PHVIEHVPP--------------H--P-CM-------WILHDWN  242 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~-D~-~~~~~~a~~--------------~--~-gv-------~vLh~~~  242 (333)
                      ...+++||||||+|.++..++++.=-+-.+.. |. +..++.|.+              .  | +.       .++..|.
T Consensus       116 g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~  195 (506)
T PF03141_consen  116 GGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWH  195 (506)
T ss_pred             CceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccch
Confidence            45689999999999999999987521111111 22 122222211              1  1 11       6666777


Q ss_pred             hhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738          243 DEHCLKLLKNCYKSIPEDGKVIAVELMLP  271 (333)
Q Consensus       243 ~~~~~~lL~~~~~~L~pgG~l~i~e~~~~  271 (333)
                      +.+ ..+|-++-|+|+|||.+++.-+-..
T Consensus       196 ~~~-g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  196 PND-GFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             hcc-cceeehhhhhhccCceEEecCCccc
Confidence            665 3688899999999999988876443

; GO: 0008168 methyltransferase activity

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=96.65  E-value=0.0035  Score=53.32  Aligned_cols=120  Identities=22%  Similarity=0.222  Sum_probs=76.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--CCe-------------------------EEEccC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--PCM-------------------------WILHDW  241 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~gv-------------------------~vLh~~  241 (333)
                      .+..++|||||-|.....+..+.- -+.|..|. ..|++.++..  |++                         .-||..
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~v-ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~  150 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGV-EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT  150 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcch-hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence            456899999999999999988872 35788888 6888888764  443                         344544


Q ss_pred             ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcC------CHHHHHHHHHhCCCC
Q 035738          242 NDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKER------TRHEFMTLATGAGFS  315 (333)
Q Consensus       242 ~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~r------t~~e~~~ll~~aGf~  315 (333)
                      ++-.  .-+.+|..+|||+|.++-.-..-+.      ...+.....+.-+-- .+|-..      ...++-.+|..|||.
T Consensus       151 NdLP--g~m~~ck~~lKPDg~FiasmlggdT------LyELR~slqLAelER-~GGiSphiSPf~qvrDiG~LL~rAGF~  221 (325)
T KOG2940|consen  151 NDLP--GSMIQCKLALKPDGLFIASMLGGDT------LYELRCSLQLAELER-EGGISPHISPFTQVRDIGNLLTRAGFS  221 (325)
T ss_pred             ccCc--hHHHHHHHhcCCCccchhHHhcccc------HHHHHHHhhHHHHHh-ccCCCCCcChhhhhhhhhhHHhhcCcc
Confidence            4433  6788999999999987654332111      111112222222211 133211      246788999999998


Q ss_pred             eeEE
Q 035738          316 GISC  319 (333)
Q Consensus       316 ~~~~  319 (333)
                      ...+
T Consensus       222 m~tv  225 (325)
T KOG2940|consen  222 MLTV  225 (325)
T ss_pred             ccee
Confidence            7654

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=96.64  E-value=0.01  Score=50.55  Aligned_cols=39  Identities=21%  Similarity=0.262  Sum_probs=34.8

Q ss_pred             EEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          194 LVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       194 vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      |.||||-+|.+...|++.....+++..|+ +..++.|+++
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~   40 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKEN   40 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHH
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH
Confidence            68999999999999999999999999999 8899888753

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B

Probab=96.62  E-value=0.0025  Score=43.06  Aligned_cols=54  Identities=17%  Similarity=0.263  Sum_probs=45.8

Q ss_pred             HHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           26 PMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        26 ~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..+|.--.++.|++.|...   +|.|+.|||+.+|+    ++..+.+-|+.|...|+|+..
T Consensus         4 ~~aL~~p~R~~Il~~L~~~---~~~t~~ela~~l~~----~~~t~s~hL~~L~~aGli~~~   57 (61)
T PF12840_consen    4 FKALSDPTRLRILRLLASN---GPMTVSELAEELGI----SQSTVSYHLKKLEEAGLIEVE   57 (61)
T ss_dssp             HHHHTSHHHHHHHHHHHHC---STBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHhCCHHHHHHHHHHhcC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence            3455566788899999543   59999999999999    999999999999999999986

...

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=96.61  E-value=0.003  Score=56.99  Aligned_cols=49  Identities=16%  Similarity=0.354  Sum_probs=38.6

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP  230 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~  230 (333)
                      ..+++... .....+|||||||+|.++..+++..  .+++++|+ +.+++.++
T Consensus        26 ~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~   75 (294)
T PTZ00338         26 DKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELK   75 (294)
T ss_pred             HHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHH
Confidence            45555555 6677899999999999999999875  46899999 77777654

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.0029  Score=53.08  Aligned_cols=78  Identities=13%  Similarity=0.145  Sum_probs=54.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHH--CCCCeEEEeec-hhHhhhCCCC-------CC---------e-------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTK--YPYIKGINFDL-PHVIEHVPPH-------PC---------M-------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~-------~g---------v-------------  235 (333)
                      +.++.+.||||+|+|.++..+..-  .+.....++|. |++++.++++       +.         +             
T Consensus        80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e  159 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE  159 (237)
T ss_pred             hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence            557889999999999999887743  34444478887 8988877653       11         1             


Q ss_pred             ----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738          236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                          +.+|.=.  .+.++.+++..-|+|||+++|--
T Consensus       160 ~a~YDaIhvGA--aa~~~pq~l~dqL~~gGrllip~  193 (237)
T KOG1661|consen  160 QAPYDAIHVGA--AASELPQELLDQLKPGGRLLIPV  193 (237)
T ss_pred             cCCcceEEEcc--CccccHHHHHHhhccCCeEEEee
Confidence                3333222  23478889999999999988743

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.55  E-value=0.025  Score=47.02  Aligned_cols=117  Identities=12%  Similarity=0.066  Sum_probs=73.7

Q ss_pred             CCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechhH-----------hhhCCC--CCC----------------e-
Q 035738          187 GFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDLPHV-----------IEHVPP--HPC----------------M-  235 (333)
Q Consensus       187 ~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~~~~-----------~~~a~~--~~g----------------v-  235 (333)
                      +++...+|+|+=.|.|.++..+...- |.-.++.+--.+.           -..+++  +.+                + 
T Consensus        45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d  124 (238)
T COG4798          45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD  124 (238)
T ss_pred             ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence            47889999999999999999888753 4333333211111           111111  011                0 


Q ss_pred             --------EEEcc--CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHH
Q 035738          236 --------WILHD--WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEF  305 (333)
Q Consensus       236 --------~vLh~--~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~  305 (333)
                              +.+|.  +....+.++-+.++++|||||.++|.|.......+...      ..         .-..++.+-.
T Consensus       125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~d------t~---------~~~ri~~a~V  189 (238)
T COG4798         125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSD------TI---------TLHRIDPAVV  189 (238)
T ss_pred             ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhh------hh---------hhcccChHHH
Confidence                    44442  33455678999999999999999999997765433210      00         1113356778


Q ss_pred             HHHHHhCCCCeeE
Q 035738          306 MTLATGAGFSGIS  318 (333)
Q Consensus       306 ~~ll~~aGf~~~~  318 (333)
                      ++..+.+||+..-
T Consensus       190 ~a~veaaGFkl~a  202 (238)
T COG4798         190 IAEVEAAGFKLEA  202 (238)
T ss_pred             HHHHHhhcceeee
Confidence            8888999998664

>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp

Probab=96.55  E-value=0.0044  Score=44.68  Aligned_cols=48  Identities=27%  Similarity=0.360  Sum_probs=38.7

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS  102 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~  102 (333)
                      ++.|.++||+.+++    ++..++++++.|...|+++...  | .++.|.++...
T Consensus        24 ~~~s~~eiA~~~~i----~~~~l~kil~~L~~~Gli~s~~--G-~~GGy~L~~~~   71 (83)
T PF02082_consen   24 KPVSSKEIAERLGI----SPSYLRKILQKLKKAGLIESSR--G-RGGGYRLARPP   71 (83)
T ss_dssp             C-BEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEET--S-TTSEEEESS-C
T ss_pred             CCCCHHHHHHHHCc----CHHHHHHHHHHHhhCCeeEecC--C-CCCceeecCCH
Confidence            46999999999999    9999999999999999998763  3 35778877543

(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.

>PHA03412 putative methyltransferase; Provisional

Probab=96.55  E-value=0.0024  Score=55.27  Aligned_cols=42  Identities=17%  Similarity=0.052  Sum_probs=36.2

Q ss_pred             CCeEEEEcCCccHHHHHHHHHC---CCCeEEEeec-hhHhhhCCCC
Q 035738          191 IKQLVDVGGGIGVTLQAITTKY---PYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ..+|||+|||+|.++..++++.   +..+++++|+ +.+++.|+++
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n   95 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI   95 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh
Confidence            5699999999999999998874   4678999999 8888888764

>COG1414 IclR Transcriptional regulator [Transcription]

Probab=96.51  E-value=0.0029  Score=55.67  Aligned_cols=58  Identities=22%  Similarity=0.334  Sum_probs=48.6

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS  102 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~  102 (333)
                      +.|++.|+..+  +++++.|||+++|+    +..-+.|+|..|+..||+.+++    ++++|++++..
T Consensus         7 l~iL~~l~~~~--~~l~l~ela~~~gl----pksT~~RlL~tL~~~G~v~~d~----~~g~Y~Lg~~~   64 (246)
T COG1414           7 LAILDLLAEGP--GGLSLAELAERLGL----PKSTVHRLLQTLVELGYVEQDP----EDGRYRLGPRL   64 (246)
T ss_pred             HHHHHHHHhCC--CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEcC----CCCcEeehHHH
Confidence            56788888743  34679999999999    9999999999999999999982    35689998654

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=96.47  E-value=0.0037  Score=54.63  Aligned_cols=43  Identities=16%  Similarity=0.275  Sum_probs=37.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ....++|+|||+|..+..++...|+.++|.+|. +.++..|.++
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN  191 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKEN  191 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHH
Confidence            455899999999999999999999999999999 6777766543

>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.024  Score=50.56  Aligned_cols=123  Identities=19%  Similarity=0.212  Sum_probs=90.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHC--CCCeEEEeechhHhhhCCCC---C------------Ce---------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKY--PYIKGINFDLPHVIEHVPPH---P------------CM---------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~~~---~------------gv---------------  235 (333)
                      .+...+|+.+|||.-.....+...+  +.++++-+|.|.+++.--..   +            ++               
T Consensus        85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~  164 (335)
T KOG2918|consen   85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL  164 (335)
T ss_pred             cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence            5678899999999999999999987  78889999998776532210   0            00               


Q ss_pred             -------------------------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccccccc
Q 035738          236 -------------------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNS  284 (333)
Q Consensus       236 -------------------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~  284 (333)
                                                     .+|.+.+++.+..+++-+.+.++- +.+++.|.+.+.++          
T Consensus       165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~-a~fv~YEQi~~~D~----------  233 (335)
T KOG2918|consen  165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN-AHFVNYEQINPNDR----------  233 (335)
T ss_pred             eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc-ccEEEEeccCCCCh----------
Confidence                                           788888999999999999887754 67889999886542          


Q ss_pred             chhhHHHhhCC-CC-------CcCCHHHHHHHHHhCCCCeeEEeec
Q 035738          285 DSDVLMMIQSP-GG-------KERTRHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       285 ~~d~~m~~~~~-~g-------~~rt~~e~~~ll~~aGf~~~~~~~~  322 (333)
                       +.-.|..++. .|       ...|.+..++-+.++||+.+.+..+
T Consensus       234 -Fg~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm  278 (335)
T KOG2918|consen  234 -FGKVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM  278 (335)
T ss_pred             -HHHHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence             2223332210 11       1247889999999999999988765

>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A

Probab=96.35  E-value=0.0047  Score=39.37  Aligned_cols=45  Identities=16%  Similarity=0.348  Sum_probs=38.3

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhccccee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVE   84 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~   84 (333)
                      .+..|++.|.+.   +++|..|||+.+|+    +...+.+.++-|...|+++
T Consensus         4 ~~~~Il~~l~~~---~~~t~~ela~~~~i----s~~tv~~~l~~L~~~g~I~   48 (48)
T PF13412_consen    4 TQRKILNYLREN---PRITQKELAEKLGI----SRSTVNRYLKKLEEKGLIE   48 (48)
T ss_dssp             HHHHHHHHHHHC---TTS-HHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCcCcC
Confidence            356788899986   48999999999999    9999999999999999985

...

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=96.28  E-value=0.004  Score=49.71  Aligned_cols=39  Identities=28%  Similarity=0.319  Sum_probs=34.1

Q ss_pred             eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          193 QLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       193 ~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      +++|||||.|.++..+++.+|..+++.+|. |.+.+.+++
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~   40 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEE   40 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHH
Confidence            489999999999999999999999999998 777766553

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.28  E-value=0.0061  Score=48.77  Aligned_cols=43  Identities=21%  Similarity=0.361  Sum_probs=35.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHH----CCCCeEEEeec-hhHhhhCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTK----YPYIKGINFDL-PHVIEHVP  230 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~  230 (333)
                      ..+..+|+|+|||.|.++..++..    .++++++++|. +..++.+.
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~   70 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQ   70 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHH
Confidence            467889999999999999999882    37899999998 66666655

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=96.26  E-value=0.0097  Score=55.76  Aligned_cols=41  Identities=12%  Similarity=0.079  Sum_probs=34.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ...+|||++||+|.++..++..  ..+++++|+ +.+++.++++
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N  274 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQS  274 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHH
Confidence            3468999999999999999854  368999999 8888888764

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK11569 transcriptional repressor IclR; Provisional

Probab=96.13  E-value=0.0063  Score=54.49  Aligned_cols=58  Identities=14%  Similarity=0.198  Sum_probs=48.4

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS  102 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~  102 (333)
                      +.|++.|.+.+  ++.|+.|||+++|+    +..-+.|+|..|+..||+.++.    +.++|++.+..
T Consensus        31 l~IL~~l~~~~--~~~~lseia~~lgl----pksTv~RlL~tL~~~G~l~~~~----~~~~Y~lG~~l   88 (274)
T PRK11569         31 LKLLEWIAESN--GSVALTELAQQAGL----PNSTTHRLLTTMQQQGFVRQVG----ELGHWAIGAHA   88 (274)
T ss_pred             HHHHHHHHhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC----CCCeEecCHHH
Confidence            55677777643  58999999999999    9999999999999999999862    46789987654

>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family

Probab=96.13  E-value=0.0053  Score=54.10  Aligned_cols=56  Identities=21%  Similarity=0.288  Sum_probs=47.3

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS  102 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~  102 (333)
                      +.|++.|...+  .+.|+.|||+++|+    +..-+.|+|..|+..|+|.++      ++.|++.+..
T Consensus        12 l~IL~~l~~~~--~~~~l~eia~~lgl----pksT~~RlL~tL~~~G~l~~~------~~~Y~lG~~~   67 (248)
T TIGR02431        12 LAVIEAFGAER--PRLTLTDVAEATGL----TRAAARRFLLTLVELGYVTSD------GRLFWLTPRV   67 (248)
T ss_pred             HHHHHHHhcCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC------CCEEEecHHH
Confidence            45777777543  58999999999999    999999999999999999975      5789987654

Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.

>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis

Probab=96.12  E-value=0.0041  Score=42.97  Aligned_cols=47  Identities=23%  Similarity=0.265  Sum_probs=41.6

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .+..++..|-..   |+.|+.|||+.+|+    +...+.+.|+-|...|++.+.
T Consensus         9 ~E~~vy~~Ll~~---~~~t~~eIa~~l~i----~~~~v~~~L~~L~~~GlV~~~   55 (68)
T PF01978_consen    9 NEAKVYLALLKN---GPATAEEIAEELGI----SRSTVYRALKSLEEKGLVERE   55 (68)
T ss_dssp             HHHHHHHHHHHH---CHEEHHHHHHHHTS----SHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            456677777654   59999999999999    999999999999999999987

TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.

>PRK10163 DNA-binding transcriptional repressor AllR; Provisional

Probab=96.12  E-value=0.0065  Score=54.31  Aligned_cols=59  Identities=20%  Similarity=0.249  Sum_probs=48.7

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS  102 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~  102 (333)
                      -+.|++.|...+  .+.|+.|||+++|+    +..-+.|+|..|...|+|.++.    +.+.|++....
T Consensus        27 ~l~IL~~~~~~~--~~~tl~eIa~~lgl----pkStv~RlL~tL~~~G~l~~~~----~~~~Y~lG~~l   85 (271)
T PRK10163         27 GIAILQYLEKSG--GSSSVSDISLNLDL----PLSTTFRLLKVLQAADFVYQDS----QLGWWHIGLGV   85 (271)
T ss_pred             HHHHHHHHHhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC----CCCeEEecHHH
Confidence            355777777653  47999999999999    9999999999999999999862    46789887644

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.08  E-value=0.087  Score=43.43  Aligned_cols=39  Identities=21%  Similarity=0.322  Sum_probs=32.2

Q ss_pred             CCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhC
Q 035738          191 IKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHV  229 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a  229 (333)
                      +.-++|||||+|..+..|.+. -|++.....|+ |.+++..
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~T   84 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEAT   84 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHH
Confidence            677999999999999888775 47788888899 8877653

>PRK09834 DNA-binding transcriptional activator MhpR; Provisional

Probab=96.02  E-value=0.0084  Score=53.34  Aligned_cols=61  Identities=13%  Similarity=0.131  Sum_probs=49.8

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccc
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKY  104 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~  104 (333)
                      -+.|++.|...+  ++.|..|||+.+|+    +..-+.|+|+.|...|++.+++    +++.|++++....
T Consensus        13 al~iL~~l~~~~--~~ls~~eia~~lgl----~kstv~RlL~tL~~~g~v~~~~----~~~~Y~Lg~~~~~   73 (263)
T PRK09834         13 GLMVLRALNRLD--GGATVGLLAELTGL----HRTTVRRLLETLQEEGYVRRSA----SDDSFRLTLKVRQ   73 (263)
T ss_pred             HHHHHHHHHhcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEec----CCCcEEEcHHHHH
Confidence            355677777653  46999999999999    9999999999999999999873    3678999865543

>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional

Probab=96.02  E-value=0.0072  Score=53.55  Aligned_cols=57  Identities=14%  Similarity=0.275  Sum_probs=47.4

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS  102 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~  102 (333)
                      +.|++.|...   ++.|+.|||+++|+    +..-+.|+|+.|+..|++.++.    +++.|++.+..
T Consensus        17 l~IL~~l~~~---~~l~l~eia~~lgl----~kstv~Rll~tL~~~G~l~~~~----~~~~Y~lG~~~   73 (257)
T PRK15090         17 FGILQALGEE---REIGITELSQRVMM----SKSTVYRFLQTMKTLGYVAQEG----ESEKYSLTLKL   73 (257)
T ss_pred             HHHHHHhhcC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC----CCCcEEecHHH
Confidence            4566666654   48999999999999    9999999999999999999862    36789988654

>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional

Probab=96.01  E-value=0.01  Score=45.69  Aligned_cols=67  Identities=19%  Similarity=0.256  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738           25 LPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS  100 (333)
Q Consensus        25 ~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~  100 (333)
                      ...+|.--.++.|+..|...   ++.++.||++.+++    .+..+.+.|+.|...|+++...+ | ....|++++
T Consensus         9 ~fkaLadptRl~IL~~L~~~---~~~~v~ela~~l~l----sqstvS~HL~~L~~AGLV~~~r~-G-r~~~Y~l~~   75 (117)
T PRK10141          9 LFKILSDETRLGIVLLLRES---GELCVCDLCTALDQ----SQPKISRHLALLRESGLLLDRKQ-G-KWVHYRLSP   75 (117)
T ss_pred             HHHHhCCHHHHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEE-c-CEEEEEECc
Confidence            34567777899999999864   48999999999999    99999999999999999998732 2 123466654

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=95.94  E-value=0.017  Score=48.37  Aligned_cols=76  Identities=16%  Similarity=0.232  Sum_probs=49.7

Q ss_pred             eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hh---HhhhCCC---CCCeEEEccCChh----------------HHHHH
Q 035738          193 QLVDVGGGIGVTLQAITTKYPYIKGINFDL-PH---VIEHVPP---HPCMWILHDWNDE----------------HCLKL  249 (333)
Q Consensus       193 ~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~---~~~~a~~---~~gv~vLh~~~~~----------------~~~~l  249 (333)
                      +++|||+|.|.-+..++-.+|+.+++.+|. ..   .++.+..   ..++.++|.--++                ....+
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~l~~l  130 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAPLDKL  130 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSSHHHH
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcCHHHH
Confidence            899999999999999999999999999996 32   2332221   1344333321111                12367


Q ss_pred             HHHHHHhCCCCcEEEEEee
Q 035738          250 LKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       250 L~~~~~~L~pgG~l~i~e~  268 (333)
                      +.-+...++|||+++..--
T Consensus       131 ~~~~~~~l~~~G~~l~~KG  149 (184)
T PF02527_consen  131 LELARPLLKPGGRLLAYKG  149 (184)
T ss_dssp             HHHHGGGEEEEEEEEEEES
T ss_pred             HHHHHHhcCCCCEEEEEcC
Confidence            7777777788887776643

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A

Probab=95.93  E-value=0.013  Score=39.47  Aligned_cols=46  Identities=26%  Similarity=0.210  Sum_probs=37.3

Q ss_pred             ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      .|.+.|....  +|.|..|||+++|+    +...++++|..|...|.+.+.+
T Consensus         4 ~Il~~i~~~~--~p~~T~eiA~~~gl----s~~~aR~yL~~Le~eG~V~~~~   49 (62)
T PF04703_consen    4 KILEYIKEQN--GPLKTREIADALGL----SIYQARYYLEKLEKEGKVERSP   49 (62)
T ss_dssp             CHHHHHHHHT--S-EEHHHHHHHHTS-----HHHHHHHHHHHHHCTSEEEES
T ss_pred             HHHHHHHHcC--CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEec
Confidence            4566666621  59999999999999    9999999999999999999863

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.89  E-value=0.24  Score=42.77  Aligned_cols=134  Identities=13%  Similarity=0.108  Sum_probs=81.7

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec--hhHhhhCCCCCCe---------------------E
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL--PHVIEHVPPHPCM---------------------W  236 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~gv---------------------~  236 (333)
                      ..++.++-......+||||..||.++..++++-. .+++++|.  .......|+.+.|                     .
T Consensus        69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~  147 (245)
T COG1189          69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDL  147 (245)
T ss_pred             HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCe
Confidence            4455555234788999999999999999998743 35677775  2333344443322                     4


Q ss_pred             EEccCChhHHHHHHHHHHHhCCCCcEEEEE-eeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCC
Q 035738          237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAV-ELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFS  315 (333)
Q Consensus       237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~-e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~  315 (333)
                      +..+.+=.....+|..+...++|++-++.. -+-..-.+..  ...-....|       +.....-..++.+++.+.||+
T Consensus       148 ~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~--v~kkGvv~d-------~~~~~~v~~~i~~~~~~~g~~  218 (245)
T COG1189         148 IVIDVSFISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQ--VGKKGVVRD-------PKLHAEVLSKIENFAKELGFQ  218 (245)
T ss_pred             EEEEeehhhHHHHHHHHHHhcCCCceEEEEecchhhhhhhh--cCcCceecC-------cchHHHHHHHHHHHHhhcCcE
Confidence            556666555668999999999999765543 3322221110  000000000       112223467889999999999


Q ss_pred             eeEEeecC
Q 035738          316 GISCERAI  323 (333)
Q Consensus       316 ~~~~~~~~  323 (333)
                      +..+...+
T Consensus       219 ~~gl~~Sp  226 (245)
T COG1189         219 VKGLIKSP  226 (245)
T ss_pred             EeeeEccC
Confidence            99887654

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=95.85  E-value=0.046  Score=49.83  Aligned_cols=42  Identities=29%  Similarity=0.516  Sum_probs=36.3

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCC
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~  231 (333)
                      ++..++|-+|||-|..++++++ ||+ -+++.+|+ |.|++.++.
T Consensus       288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~  331 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASH  331 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhh
Confidence            4678999999999999999886 784 56899999 999999884

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=95.82  E-value=0.017  Score=55.31  Aligned_cols=106  Identities=17%  Similarity=0.202  Sum_probs=62.0

Q ss_pred             hhhhhcCCchhHHHHHHHHhhhhhhhHHHHHhhccCC---CCCCeEEEEcCCccHHHHHHHHHC----CCCeEEEeec-h
Q 035738          152 TFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGF---DNIKQLVDVGGGIGVTLQAITTKY----PYIKGINFDL-P  223 (333)
Q Consensus       152 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~---~~~~~vlDVGgG~G~~~~~l~~~~----p~~~~~~~D~-~  223 (333)
                      .|+.+++++.....|.+++..       .+.+.....   .+...|+|||||+|-++...+++.    ...+++.++- |
T Consensus       152 tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~  224 (448)
T PF05185_consen  152 TYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP  224 (448)
T ss_dssp             HHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST
T ss_pred             cHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH
Confidence            477788898888888877632       222322211   135789999999999987766553    4678999987 5


Q ss_pred             hHhhhCC----C--CCC-e---------------------EEEccCC-hhHHHHHHHHHHHhCCCCcEEE
Q 035738          224 HVIEHVP----P--HPC-M---------------------WILHDWN-DEHCLKLLKNCYKSIPEDGKVI  264 (333)
Q Consensus       224 ~~~~~a~----~--~~g-v---------------------~vLh~~~-~~~~~~lL~~~~~~L~pgG~l~  264 (333)
                      .+....+    .  ..+ |                     ..|-.+. .+-..++|....+.|+|||.++
T Consensus       225 ~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  225 NAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             HHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             hHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            4433221    1  111 1                     2222222 2344567888888999998654

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein

Probab=95.78  E-value=0.013  Score=37.06  Aligned_cols=40  Identities=18%  Similarity=0.197  Sum_probs=35.5

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccc
Q 035738           49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSL   98 (333)
Q Consensus        49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~   98 (333)
                      +.|..+||+.+|+    +...+.+.|+.|...|++...      ++.|.+
T Consensus         8 ~~s~~~la~~l~~----s~~tv~~~l~~L~~~g~l~~~------~~~~~i   47 (48)
T smart00419        8 PLTRQEIAELLGL----TRETVSRTLKRLEKEGLISRE------GGRIVI   47 (48)
T ss_pred             ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe------CCEEEE
Confidence            7899999999999    999999999999999999975      455654

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.77  E-value=0.0099  Score=53.72  Aligned_cols=83  Identities=20%  Similarity=0.358  Sum_probs=58.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCe-EEEeec-hhH---hhhCCCC----------CCe-------------------
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIK-GINFDL-PHV---IEHVPPH----------PCM-------------------  235 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~---~~~a~~~----------~gv-------------------  235 (333)
                      .+.+|||||.|.|.-+.++-.-+|+++ +++++. |..   +....++          .+|                   
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~  192 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL  192 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence            356799999999999999888999987 455665 332   2221111          111                   


Q ss_pred             -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738          236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPE  272 (333)
Q Consensus       236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~  272 (333)
                       .+||+=++.+....++++-..+.|||.++|+|...+-
T Consensus       193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~  230 (484)
T COG5459         193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA  230 (484)
T ss_pred             hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence             5555555555556899999999999999999985543

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.77  E-value=0.11  Score=43.93  Aligned_cols=87  Identities=21%  Similarity=0.200  Sum_probs=52.5

Q ss_pred             hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeechhHhhhCCCCCCeEEE-ccCChhHHHHHHHHHH
Q 035738          177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDLPHVIEHVPPHPCMWIL-HDWNDEHCLKLLKNCY  254 (333)
Q Consensus       177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~gv~vL-h~~~~~~~~~lL~~~~  254 (333)
                      -..++.+.+.-+++..+|+|+|+..|.++..+.+... ..+++++|+.++-.    .+||..| -++.+++   .+.++.
T Consensus        32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~~~---~~~~l~  104 (205)
T COG0293          32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITDED---TLEKLL  104 (205)
T ss_pred             HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccCcc---HHHHHH
Confidence            3445666665477889999999999999998888654 56689999833322    1233222 2334332   344444


Q ss_pred             HhCCCCc-EEEEEeeec
Q 035738          255 KSIPEDG-KVIAVELML  270 (333)
Q Consensus       255 ~~L~pgG-~l~i~e~~~  270 (333)
                      ..+.... -+++.|...
T Consensus       105 ~~l~~~~~DvV~sD~ap  121 (205)
T COG0293         105 EALGGAPVDVVLSDMAP  121 (205)
T ss_pred             HHcCCCCcceEEecCCC
Confidence            4444433 455555543

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=95.75  E-value=0.081  Score=44.81  Aligned_cols=85  Identities=15%  Similarity=0.145  Sum_probs=64.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-----CCe--------------------EEEcc-C
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH-----PCM--------------------WILHD-W  241 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-----~gv--------------------~vLh~-~  241 (333)
                      ..++.|||.||-|-|-....+.++.|..+.|+---|.|.++.+..     .+|                    -|+.+ +
T Consensus        99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy  178 (271)
T KOG1709|consen   99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY  178 (271)
T ss_pred             hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence            357889999999999999999999998887766558898887653     222                    33333 2


Q ss_pred             C--hhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738          242 N--DEHCLKLLKNCYKSIPEDGKVIAVELMLPE  272 (333)
Q Consensus       242 ~--~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~  272 (333)
                      +  -++.....+.+.+.|||+|.+-.+.....+
T Consensus       179 ~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~  211 (271)
T KOG1709|consen  179 SELYEDLRHFHQHVVRLLKPEGVFSYFNGLGAD  211 (271)
T ss_pred             hhHHHHHHHHHHHHhhhcCCCceEEEecCcccc
Confidence            1  345668889999999999999888876544

>PHA00738 putative HTH transcription regulator

Probab=95.70  E-value=0.015  Score=43.51  Aligned_cols=62  Identities=23%  Similarity=0.181  Sum_probs=49.6

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS  102 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~  102 (333)
                      -.+..|++.|.++   ++.++.+|++.+++    ....+.+.|+.|...|+|.... .| ....|++++..
T Consensus        12 ptRr~IL~lL~~~---e~~~V~eLae~l~l----SQptVS~HLKvLreAGLV~srK-~G-r~vyY~Ln~~~   73 (108)
T PHA00738         12 ILRRKILELIAEN---YILSASLISHTLLL----SYTTVLRHLKILNEQGYIELYK-EG-RTLYAKIRENS   73 (108)
T ss_pred             HHHHHHHHHHHHc---CCccHHHHHHhhCC----CHHHHHHHHHHHHHCCceEEEE-EC-CEEEEEECCCc
Confidence            3577889999884   37999999999999    9999999999999999999873 22 24456655444

>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family

Probab=95.69  E-value=0.028  Score=38.30  Aligned_cols=44  Identities=23%  Similarity=0.302  Sum_probs=38.2

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS  100 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~  100 (333)
                      ++.|..+||+.+|+    ++..+.+.|+.|...|++...     ..+.|.+++
T Consensus        24 ~~~s~~ela~~~g~----s~~tv~r~l~~L~~~g~i~~~-----~~~~~~l~~   67 (67)
T cd00092          24 LPLTRQEIADYLGL----TRETVSRTLKELEEEGLISRR-----GRGKYRVNP   67 (67)
T ss_pred             CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec-----CCCeEEeCC
Confidence            48999999999999    999999999999999999986     136677653

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=95.63  E-value=0.088  Score=46.99  Aligned_cols=53  Identities=23%  Similarity=0.220  Sum_probs=44.7

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCe-EEEeec-hhHhhhCCC
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIK-GINFDL-PHVIEHVPP  231 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~  231 (333)
                      ..+.++.+. ..+....+|.-=|.|.++..+++++|... .+++|. |.+++.|++
T Consensus        12 l~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~   66 (314)
T COG0275          12 LNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKE   66 (314)
T ss_pred             HHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHH
Confidence            456666666 66678999999999999999999999765 999999 889988765

>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A

Probab=95.63  E-value=0.007  Score=42.97  Aligned_cols=49  Identities=14%  Similarity=0.196  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV  106 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~  106 (333)
                      |+.+..+|+..+++    +...+.+.|+.|...|+++..      ++.|.+|+.+..++
T Consensus        18 ~~~~~t~i~~~~~L----~~~~~~~yL~~L~~~gLI~~~------~~~Y~lTekG~~~l   66 (77)
T PF14947_consen   18 GGAKKTEIMYKANL----NYSTLKKYLKELEEKGLIKKK------DGKYRLTEKGKEFL   66 (77)
T ss_dssp             T-B-HHHHHTTST------HHHHHHHHHHHHHTTSEEEE------TTEEEE-HHHHHHH
T ss_pred             CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCcCeeCC------CCEEEECccHHHHH
Confidence            58999999999999    999999999999999999764      79999999887655

>COG1959 Predicted transcriptional regulator [Transcription]

Probab=95.53  E-value=0.022  Score=46.08  Aligned_cols=55  Identities=22%  Similarity=0.283  Sum_probs=44.1

Q ss_pred             hhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738           41 IDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS  102 (333)
Q Consensus        41 L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~  102 (333)
                      |+..+.+++.|+++||+..|+    ++.+++++|..|...|+|+-..  | .+|.|+|..-.
T Consensus        17 LA~~~~~~~~s~~~IA~~~~i----s~~~L~kil~~L~kaGlV~S~r--G-~~GGy~Lar~~   71 (150)
T COG1959          17 LALLPGGGPVSSAEIAERQGI----SPSYLEKILSKLRKAGLVKSVR--G-KGGGYRLARPP   71 (150)
T ss_pred             HHhCCCCCcccHHHHHHHhCc----CHHHHHHHHHHHHHcCCEEeec--C-CCCCccCCCCh
Confidence            444333348999999999999    9999999999999999999873  3 36788887543

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=95.50  E-value=0.093  Score=46.57  Aligned_cols=124  Identities=15%  Similarity=0.166  Sum_probs=77.6

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeechhHhhhCCCC---------C--------------------Ce---
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDLPHVIEHVPPH---------P--------------------CM---  235 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~---------~--------------------gv---  235 (333)
                      ++...||.+|||-=.....+.  +| +++++-+|.|++++.-++.         .                    |.   
T Consensus        80 ~g~~qvV~LGaGlDTr~~Rl~--~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~  157 (260)
T TIGR00027        80 AGIRQVVILGAGLDTRAYRLP--WPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPT  157 (260)
T ss_pred             cCCcEEEEeCCccccHHHhcC--CCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence            356789999999888777763  33 5778888889887633211         0                    00   


Q ss_pred             --------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCC----CcCCHH
Q 035738          236 --------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGG----KERTRH  303 (333)
Q Consensus       236 --------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g----~~rt~~  303 (333)
                              .++.+++++++.++|+.+.+...||+.|+ +|.+.+-....  ....  ............+    ...+.+
T Consensus       158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~-~d~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~  232 (260)
T TIGR00027       158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLA-FDYVRPLDGEW--RAGM--RAPVYHAARGVDGSGLVFGIDRA  232 (260)
T ss_pred             CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEE-EEeccccchhH--HHHH--HHHHHHhhhcccccccccCCChh
Confidence                    77889999999999999999888877655 56554411100  0000  0000000000001    123578


Q ss_pred             HHHHHHHhCCCCeeEE
Q 035738          304 EFMTLATGAGFSGISC  319 (333)
Q Consensus       304 e~~~ll~~aGf~~~~~  319 (333)
                      ++.++|++.||+....
T Consensus       233 ~~~~~l~~~Gw~~~~~  248 (260)
T TIGR00027       233 DVAEWLAERGWRASEH  248 (260)
T ss_pred             hHHHHHHHCCCeeecC
Confidence            9999999999997765

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PRK10857 DNA-binding transcriptional regulator IscR; Provisional

Probab=95.47  E-value=0.026  Score=46.30  Aligned_cols=46  Identities=15%  Similarity=0.198  Sum_probs=39.3

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS  100 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~  100 (333)
                      ++.|+++||+++++    ++..++++|+.|...|+|....  | .++.|.+..
T Consensus        24 ~~vs~~eIA~~~~i----p~~~l~kIl~~L~~aGLv~s~r--G-~~GGy~Lar   69 (164)
T PRK10857         24 GPVPLADISERQGI----SLSYLEQLFSRLRKNGLVSSVR--G-PGGGYLLGK   69 (164)
T ss_pred             CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC--C-CCCCeeccC
Confidence            48999999999999    9999999999999999999742  3 356788764

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=95.37  E-value=0.051  Score=46.95  Aligned_cols=80  Identities=14%  Similarity=0.265  Sum_probs=61.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCC----CeEEEeec-hhHhhh-----CCCCCCe------------------------
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPY----IKGINFDL-PHVIEH-----VPPHPCM------------------------  235 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~-----a~~~~gv------------------------  235 (333)
                      +.-+++|+|.|+..=+..++.++..    ++++-+|+ ..++..     .+++|++                        
T Consensus        78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~  157 (321)
T COG4301          78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF  157 (321)
T ss_pred             CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence            4678999999999999988888766    78888998 455442     2234432                        


Q ss_pred             ----EEEccCChhHHHHHHHHHHHhCCCCcEEEE-Eeee
Q 035738          236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIA-VELM  269 (333)
Q Consensus       236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i-~e~~  269 (333)
                          ..|-++++++|...|.+++.+|+||-.+++ +|..
T Consensus       158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~  196 (321)
T COG4301         158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLR  196 (321)
T ss_pred             EEecccccCCChHHHHHHHHHHHhcCCCcceEEEecccc
Confidence                566788999999999999999999976665 4443

>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A

Probab=95.36  E-value=0.019  Score=39.39  Aligned_cols=50  Identities=24%  Similarity=0.375  Sum_probs=36.0

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCcccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSV  101 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~  101 (333)
                      ++.+..+|++.+++    +...+.+.++.|...|+|++.... ......|++|+.
T Consensus        17 ~~~t~~~l~~~~~~----~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~   67 (68)
T PF13463_consen   17 GPMTQSDLAERLGI----SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPA   67 (68)
T ss_dssp             S-BEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HH
T ss_pred             CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCC
Confidence            59999999999999    999999999999999999876321 111234777764

>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif

Probab=95.33  E-value=0.019  Score=39.78  Aligned_cols=43  Identities=14%  Similarity=0.291  Sum_probs=36.8

Q ss_pred             hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      |-+.|.+.   +.+|..|||..+++    ++..++.+|+.|...|.+.+.
T Consensus         5 i~~~l~~~---~~~S~~eLa~~~~~----s~~~ve~mL~~l~~kG~I~~~   47 (69)
T PF09012_consen    5 IRDYLRER---GRVSLAELAREFGI----SPEAVEAMLEQLIRKGYIRKV   47 (69)
T ss_dssp             HHHHHHHS----SEEHHHHHHHTT------HHHHHHHHHHHHCCTSCEEE
T ss_pred             HHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence            55677776   59999999999999    999999999999999999987

FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.

>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A

Probab=95.28  E-value=0.012  Score=42.05  Aligned_cols=64  Identities=20%  Similarity=0.274  Sum_probs=47.1

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CC-cccccccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SG-ARRLYSLNSVSK  103 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~~y~~t~~~~  103 (333)
                      ++++|...|...   +.++..+|.+.+|+    +...+.+.|+.|...|++.....- +. ....|++|+.+.
T Consensus         1 vRl~Il~~L~~~---~~~~f~~L~~~l~l----t~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr   66 (80)
T PF13601_consen    1 VRLAILALLYAN---EEATFSELKEELGL----TDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGR   66 (80)
T ss_dssp             HHHHHHHHHHHH---SEEEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHH
T ss_pred             CHHHHHHHHhhc---CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHH
Confidence            467888888875   48999999999999    999999999999999999987421 11 122366676664

>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=95.24  E-value=0.024  Score=36.88  Aligned_cols=43  Identities=23%  Similarity=0.465  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHH
Q 035738           25 LPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLL   77 (333)
Q Consensus        25 ~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L   77 (333)
                      .-.+|.+|++.|-||. +.     ..|..|||+.+|+    .+..+...||-.
T Consensus         5 Q~e~L~~A~~~GYfd~-PR-----~~tl~elA~~lgi----s~st~~~~LRra   47 (53)
T PF04967_consen    5 QREILKAAYELGYFDV-PR-----RITLEELAEELGI----SKSTVSEHLRRA   47 (53)
T ss_pred             HHHHHHHHHHcCCCCC-CC-----cCCHHHHHHHhCC----CHHHHHHHHHHH
Confidence            3468999999999998 43     6899999999999    787777777643

This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.

>COG3355 Predicted transcriptional regulator [Transcription]

Probab=95.20  E-value=0.032  Score=43.19  Aligned_cols=47  Identities=17%  Similarity=0.263  Sum_probs=40.0

Q ss_pred             HhChhhHhh-hcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           34 ELGIFEIID-KAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        34 ~lglfd~L~-~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      +..+|.+|- .+   ||.|+++||+.++.    +..-+++-|+-|...|++.+..
T Consensus        29 Dv~v~~~LL~~~---~~~tvdelae~lnr----~rStv~rsl~~L~~~GlV~Rek   76 (126)
T COG3355          29 DVEVYKALLEEN---GPLTVDELAEILNR----SRSTVYRSLQNLLEAGLVEREK   76 (126)
T ss_pred             HHHHHHHHHhhc---CCcCHHHHHHHHCc----cHHHHHHHHHHHHHcCCeeeee
Confidence            345555555 44   69999999999999    9999999999999999999984

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=95.17  E-value=0.019  Score=52.09  Aligned_cols=41  Identities=17%  Similarity=0.169  Sum_probs=34.8

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPP  231 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~  231 (333)
                      +..+|||||||||-++.-.+++. ..+++++|...+++.|++
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~  100 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARK  100 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHH
Confidence            56899999999999999888877 568999999888777764

>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR

Probab=95.09  E-value=0.035  Score=43.99  Aligned_cols=46  Identities=15%  Similarity=0.220  Sum_probs=38.9

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS  100 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~  100 (333)
                      ++.|+++||+.+++    ++..++++|+.|...|++....  | .++.|.++.
T Consensus        24 ~~~s~~~ia~~~~i----p~~~l~kil~~L~~~glv~s~~--G-~~Ggy~l~~   69 (135)
T TIGR02010        24 GPVTLADISERQGI----SLSYLEQLFAKLRKAGLVKSVR--G-PGGGYQLGR   69 (135)
T ss_pred             CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEe--C-CCCCEeccC
Confidence            48999999999999    9999999999999999998642  2 245677764

This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=95.08  E-value=0.028  Score=47.39  Aligned_cols=42  Identities=12%  Similarity=0.031  Sum_probs=35.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ...++||++||+|.++.+++.+... +++.+|. +.+++.++++
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N   91 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKEN   91 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHH
Confidence            3578999999999999999998764 7899998 7777776653

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.07  E-value=0.025  Score=44.70  Aligned_cols=41  Identities=29%  Similarity=0.465  Sum_probs=33.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCC-eEEEeec-hhHhhhCCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYI-KGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~  232 (333)
                      .+.++.|+|||.|-+.  ++-.+|.. .++|+|+ |..++.++++
T Consensus        48 Egkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rN   90 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRN   90 (185)
T ss_pred             cCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhc
Confidence            5678999999999998  44445544 5799999 9999999876

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=94.98  E-value=0.47  Score=39.44  Aligned_cols=80  Identities=18%  Similarity=0.284  Sum_probs=54.7

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechhHhhhCCCCCCeEEE--ccCChhHHHHHHHHHHHhC
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDLPHVIEHVPPHPCMWIL--HDWNDEHCLKLLKNCYKSI  257 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~gv~vL--h~~~~~~~~~lL~~~~~~L  257 (333)
                      +-+.+.-+++..+|||+||..|.++.-..++. |+-.+.++|+-++..    .+|+.++  .++.|+   ...++++++|
T Consensus        60 indKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp---~~~~ki~e~l  132 (232)
T KOG4589|consen   60 INDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDP---ETYRKIFEAL  132 (232)
T ss_pred             ehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCH---HHHHHHHHhC
Confidence            33444446778999999999999999877765 999999999843321    2344333  356666   5788999999


Q ss_pred             CCCc--EEEEEee
Q 035738          258 PEDG--KVIAVEL  268 (333)
Q Consensus       258 ~pgG--~l~i~e~  268 (333)
                       |+-  -+++.|.
T Consensus       133 -p~r~VdvVlSDM  144 (232)
T KOG4589|consen  133 -PNRPVDVVLSDM  144 (232)
T ss_pred             -CCCcccEEEecc
Confidence             542  3444444

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.96  E-value=1.1  Score=37.77  Aligned_cols=116  Identities=12%  Similarity=0.103  Sum_probs=75.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhH----hhhCCCCCCe---------------------EEEccC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHV----IEHVPPHPCM---------------------WILHDW  241 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~~~gv---------------------~vLh~~  241 (333)
                      ++++.+||-+|..+|.+...+..-.++-.+.+++. |.+    ++.|++.+++                     .+..+.
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV  153 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDV  153 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEec
Confidence            67899999999999999999998888767777776 543    4455544332                     556676


Q ss_pred             Chh-HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEe
Q 035738          242 NDE-HCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCE  320 (333)
Q Consensus       242 ~~~-~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~  320 (333)
                      ..+ ++.=+..++..-|++||.+++.=-...-+...+                   .++ -..+-.+-|++.||++.++.
T Consensus       154 AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~d-------------------p~~-vf~~ev~kL~~~~f~i~e~~  213 (231)
T COG1889         154 AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTAD-------------------PEE-VFKDEVEKLEEGGFEILEVV  213 (231)
T ss_pred             CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCC-------------------HHH-HHHHHHHHHHhcCceeeEEe
Confidence            644 344456677888999987666544322211110                   000 12233455688899999888


Q ss_pred             ecC
Q 035738          321 RAI  323 (333)
Q Consensus       321 ~~~  323 (333)
                      ...
T Consensus       214 ~Le  216 (231)
T COG1889         214 DLE  216 (231)
T ss_pred             ccC
Confidence            764

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.95  E-value=0.15  Score=43.61  Aligned_cols=85  Identities=12%  Similarity=0.192  Sum_probs=61.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC---CCe---------------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH---PCM---------------------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~---~gv---------------------------  235 (333)
                      .-++++++|||.=||..+..++.+-|. -+++.+|+ +...+.+.+.   .|+                           
T Consensus        71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf  150 (237)
T KOG1663|consen   71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF  150 (237)
T ss_pred             HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence            446899999999999999999998875 67888998 5555555321   111                           


Q ss_pred             -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738          236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPE  272 (333)
Q Consensus       236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~  272 (333)
                       +++-+-..........++.+.+++||.|++-....+.
T Consensus       151 DfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G  188 (237)
T KOG1663|consen  151 DFAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPG  188 (237)
T ss_pred             eEEEEccchHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence             5555544445568999999999999987766554443

>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B

Probab=94.92  E-value=0.028  Score=37.74  Aligned_cols=49  Identities=18%  Similarity=0.310  Sum_probs=39.4

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      +..++..|...++ ...|+.|||+.+++    ++..+.+.++.|...|++++..
T Consensus         7 q~~vL~~l~~~~~-~~~t~~~la~~l~~----~~~~vs~~v~~L~~~Glv~r~~   55 (62)
T PF12802_consen    7 QFRVLMALARHPG-EELTQSELAERLGI----SKSTVSRIVKRLEKKGLVERER   55 (62)
T ss_dssp             HHHHHHHHHHSTT-SGEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHCCC-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC
Confidence            4456667776531 12899999999999    9999999999999999999873

...

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=94.89  E-value=0.026  Score=52.48  Aligned_cols=39  Identities=10%  Similarity=0.181  Sum_probs=34.2

Q ss_pred             CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      .+|||++||+|.++..+++...  +++++|. +.+++.++++
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n  238 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYN  238 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHH
Confidence            4699999999999999988874  7999999 8899888765

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR

Probab=94.86  E-value=0.062  Score=41.40  Aligned_cols=69  Identities=17%  Similarity=0.136  Sum_probs=51.0

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCcccccccccccccccc
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYVP  107 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~~  107 (333)
                      ..+..++..|...   ++.|..+||+.+++    +...+.+.++-|...|+|.+.... +...-.+.+|+.+..+..
T Consensus        28 ~~q~~iL~~l~~~---~~~t~~ela~~~~~----~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~   97 (118)
T TIGR02337        28 EQQWRILRILAEQ---GSMEFTQLANQACI----LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYA   97 (118)
T ss_pred             HHHHHHHHHHHHc---CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence            3445577777775   48999999999999    888999999999999999986311 111224777777665543

This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.

>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator)

Probab=94.84  E-value=0.047  Score=42.97  Aligned_cols=47  Identities=26%  Similarity=0.296  Sum_probs=38.9

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV  101 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~  101 (333)
                      ++.|.++||+.+++    ++..++++|+.|...|++....  | .++.|.++..
T Consensus        24 ~~~s~~eia~~~~i----~~~~v~~il~~L~~~gli~~~~--g-~~ggy~l~~~   70 (132)
T TIGR00738        24 GPVSVKEIAERQGI----SRSYLEKILRTLRRAGLVESVR--G-PGGGYRLARP   70 (132)
T ss_pred             CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecc--C-CCCCccCCCC
Confidence            48999999999999    9999999999999999998641  2 2456776543

This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.

>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR

Probab=94.80  E-value=0.042  Score=46.84  Aligned_cols=66  Identities=20%  Similarity=0.277  Sum_probs=49.1

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeecc---CCCcccccccccccccccc
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLD---ASGARRLYSLNSVSKYYVP  107 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~~y~~t~~~~~l~~  107 (333)
                      ..|+..|...   ++.|..+||+.+|+    ++..+++.|+.|...|++.+...   .|.....|.+|+.+.....
T Consensus         4 ~~IL~~L~~~---~~~t~~eLA~~lgi----s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~~   72 (203)
T TIGR02702         4 EDILSYLLKQ---GQATAAALAEALAI----SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQFP   72 (203)
T ss_pred             HHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhcc
Confidence            4567777765   48999999999999    99999999999999999997621   1111223677776664443

All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=94.73  E-value=0.093  Score=49.24  Aligned_cols=75  Identities=13%  Similarity=0.069  Sum_probs=54.9

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe------------------EEEccCChhH
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM------------------WILHDWNDEH  245 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv------------------~vLh~~~~~~  245 (333)
                      ..+|||++||+|..+..++...+..++++.|+ |..++.++++      .++                  .|.-|-+ -.
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~-Gs  136 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF-GS  136 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC-CC
Confidence            45899999999999999998887668999999 8888777653      111                  1111211 11


Q ss_pred             HHHHHHHHHHhCCCCcEEEEE
Q 035738          246 CLKLLKNCYKSIPEDGKVIAV  266 (333)
Q Consensus       246 ~~~lL~~~~~~L~pgG~l~i~  266 (333)
                      ...+|..+.+.+++||.++|.
T Consensus       137 ~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        137 PAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             cHHHHHHHHHHhcCCCEEEEE
Confidence            236788877889999999998

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=94.68  E-value=0.35  Score=44.27  Aligned_cols=78  Identities=10%  Similarity=0.095  Sum_probs=51.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCCCCe------------------EEEccCChhHHHHH
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM------------------WILHDWNDEHCLKL  249 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~gv------------------~vLh~~~~~~~~~l  249 (333)
                      +..+.++||+||++|.++..++++.  .+++.+|...+.......+.|                  +++.|..+.. .++
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~P-~rv  285 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEKP-ARV  285 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccCH-HHH
Confidence            3467899999999999999999984  589999985555544433332                  4555554332 356


Q ss_pred             HHHHHHhCCCC-cEEEEEee
Q 035738          250 LKNCYKSIPED-GKVIAVEL  268 (333)
Q Consensus       250 L~~~~~~L~pg-G~l~i~e~  268 (333)
                      ++-+.+.|..| -+-.|+..
T Consensus       286 a~lm~~Wl~~g~cr~aIfnL  305 (357)
T PRK11760        286 AELMAQWLVNGWCREAIFNL  305 (357)
T ss_pred             HHHHHHHHhcCcccEEEEEE
Confidence            66666777666 33333333

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=94.63  E-value=0.053  Score=40.65  Aligned_cols=43  Identities=19%  Similarity=0.326  Sum_probs=29.5

Q ss_pred             hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec
Q 035738          177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL  222 (333)
Q Consensus       177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~  222 (333)
                      ...-|.+.+. .......+|||||+|.+.--|...-  -++.|+|.
T Consensus        46 Li~LW~~~~~-~~~~~~FVDlGCGNGLLV~IL~~EG--y~G~GiD~   88 (112)
T PF07757_consen   46 LIELWRDMYG-EQKFQGFVDLGCGNGLLVYILNSEG--YPGWGIDA   88 (112)
T ss_pred             HHHHHhcccC-CCCCCceEEccCCchHHHHHHHhCC--CCcccccc
Confidence            3344444443 3467789999999999988887653  23677775

; GO: 0008168 methyltransferase activity

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=94.62  E-value=0.03  Score=47.02  Aligned_cols=124  Identities=19%  Similarity=0.272  Sum_probs=69.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-C-----------Ce--------EEEccCChhHHHH
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-P-----------CM--------WILHDWNDEHCLK  248 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~-----------gv--------~vLh~~~~~~~~~  248 (333)
                      .+.++||+|.|.|..+..+...+..+-.  -++ ..|+.+.+.. -           ++        ++|....++-  +
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~feevyA--TElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~--k  187 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFEEVYA--TELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPF--K  187 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHHHHHH--HHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChH--H
Confidence            4689999999999998887766655322  244 4455555432 1           11        4554334443  8


Q ss_pred             HHHHHHHhCCC-CcEEEEEeeecCCCCCC--ccccccccchhhHHHhhCCCCCcCC--HHHHHHHHHhCCCCeeEEeec
Q 035738          249 LLKNCYKSIPE-DGKVIAVELMLPEVPNT--SIESKSNSDSDVLMMIQSPGGKERT--RHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       249 lL~~~~~~L~p-gG~l~i~e~~~~~~~~~--~~~~~~~~~~d~~m~~~~~~g~~rt--~~e~~~ll~~aGf~~~~~~~~  322 (333)
                      +|+.+..+|.| .|++++. .+.|-.+-.  +..... ..=|- .+-  -+|+.+.  ...+.++|+++||++......
T Consensus       188 LL~Di~~vl~psngrviva-LVLP~~hYVE~N~~g~~-~rPdn-~Le--~~Gr~~ee~v~~~~e~lr~~g~~veawTrl  261 (288)
T KOG3987|consen  188 LLEDIHLVLAPSNGRVIVA-LVLPYMHYVETNTSGLP-LRPDN-LLE--NNGRSFEEEVARFMELLRNCGYRVEAWTRL  261 (288)
T ss_pred             HHHHHHHHhccCCCcEEEE-EEecccceeecCCCCCc-CCchH-HHH--hcCccHHHHHHHHHHHHHhcCchhhhhhcC
Confidence            99999999999 5876654 333311100  000000 00011 111  2454322  234678999999987655544

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=94.56  E-value=0.091  Score=46.11  Aligned_cols=51  Identities=16%  Similarity=0.333  Sum_probs=40.9

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ...+.+..+ ......||+||.|||.++..++++..  +++.+++ |.+++...+
T Consensus        47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~k   98 (315)
T KOG0820|consen   47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEK   98 (315)
T ss_pred             HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHH
Confidence            455666666 78889999999999999999999875  5788888 777776543

>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein

Probab=94.55  E-value=0.043  Score=40.53  Aligned_cols=47  Identities=21%  Similarity=0.353  Sum_probs=41.1

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .++.++..|...   ++.|..+|++.+++    ++..+.+.++-|...|++.+.
T Consensus        11 ~~~~il~~l~~~---~~~~~~~la~~~~~----s~~~i~~~l~~L~~~g~v~~~   57 (101)
T smart00347       11 TQFLVLRILYEE---GPLSVSELAKRLGV----SPSTVTRVLDRLEKKGLIRRL   57 (101)
T ss_pred             HHHHHHHHHHHc---CCcCHHHHHHHHCC----CchhHHHHHHHHHHCCCeEec
Confidence            356677888765   47999999999999    899999999999999999976

>PRK03902 manganese transport transcriptional regulator; Provisional

Probab=94.44  E-value=0.056  Score=43.24  Aligned_cols=49  Identities=20%  Similarity=0.192  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY  105 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l  105 (333)
                      |+.++.+||+.+++    ++..+.+.++.|...|++.+.     ....|.+|+.+..+
T Consensus        21 ~~~~~~ela~~l~v----s~~svs~~l~~L~~~Gli~~~-----~~~~i~LT~~G~~~   69 (142)
T PRK03902         21 GYARVSDIAEALSV----HPSSVTKMVQKLDKDEYLIYE-----KYRGLVLTPKGKKI   69 (142)
T ss_pred             CCcCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEEe-----cCceEEECHHHHHH
Confidence            58899999999999    999999999999999999975     24678888887644

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=94.44  E-value=0.11  Score=49.95  Aligned_cols=42  Identities=7%  Similarity=0.055  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHV  229 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a  229 (333)
                      ...+.+|||+.+|.|.=+..++....+ ..++..|+ +.-++..
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L  154 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVL  154 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHH
Confidence            567789999999999999999887653 57788888 5555444

>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism

Probab=94.37  E-value=0.073  Score=35.28  Aligned_cols=44  Identities=20%  Similarity=0.395  Sum_probs=39.9

Q ss_pred             ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .|.+.|.+.   +..|++|||+.+|+    .+.-++|=|..|...|++.+.
T Consensus         4 ~Il~~l~~~---~~~s~~ela~~~~V----S~~TiRRDl~~L~~~g~i~r~   47 (57)
T PF08220_consen    4 QILELLKEK---GKVSVKELAEEFGV----SEMTIRRDLNKLEKQGLIKRT   47 (57)
T ss_pred             HHHHHHHHc---CCEEHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            366778876   59999999999999    999999999999999999987

This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=94.31  E-value=0.038  Score=51.53  Aligned_cols=39  Identities=10%  Similarity=0.178  Sum_probs=33.9

Q ss_pred             CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      .++||++||+|.++..+++...  +++++|. +.+++.++++
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N  247 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYN  247 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHH
Confidence            5799999999999998888764  7999999 8888888764

>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length

Probab=94.31  E-value=0.067  Score=38.94  Aligned_cols=69  Identities=17%  Similarity=0.133  Sum_probs=52.8

Q ss_pred             HHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHH----------HHHhcccce-eeeccCCCcccccccc
Q 035738           31 AVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRIL----------RLLASYSVV-ECSLDASGARRLYSLN   99 (333)
Q Consensus        31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL----------~~L~~~g~l-~~~~~~~~~~~~y~~t   99 (333)
                      .=++..|+..|.+..| .+.++.|||..+++    ++..+..-|          +.|+.+|++ .+....|  ...|++|
T Consensus         8 S~~R~~vl~~L~~~yp-~~~~~~eIar~v~~----~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g--~k~Y~lT   80 (90)
T PF07381_consen    8 SKVRKKVLEYLCSIYP-EPAYPSEIARSVGS----DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGG--FKYYRLT   80 (90)
T ss_pred             HHHHHHHHHHHHHcCC-CcCCHHHHHHHHCC----CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecCC--eeEEEeC
Confidence            5567788999998744 59999999999999    998888888          468999999 4442223  4478988


Q ss_pred             ccccccc
Q 035738          100 SVSKYYV  106 (333)
Q Consensus       100 ~~~~~l~  106 (333)
                      +.+..+.
T Consensus        81 ~~G~~~~   87 (90)
T PF07381_consen   81 EKGKRIA   87 (90)
T ss_pred             hhhhhHH
Confidence            8776443

The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.22  E-value=0.12  Score=46.75  Aligned_cols=144  Identities=16%  Similarity=0.110  Sum_probs=84.5

Q ss_pred             HhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeechhHhhhCCCC--------C-------
Q 035738          170 MYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDLPHVIEHVPPH--------P-------  233 (333)
Q Consensus       170 m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~--------~-------  233 (333)
                      +...+++.-+.+.+.++  .+..+||-+|||-=.-+-++  .+| .+++.-+|.|++++.-++.        |       
T Consensus        74 ~a~Rtr~fD~~~~~~~~--~g~~qvViLgaGLDTRayRl--~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va  149 (297)
T COG3315          74 LAARTRYFDDFVRAALD--AGIRQVVILGAGLDTRAYRL--DWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVA  149 (297)
T ss_pred             HHHHHHHHHHHHHHHHH--hcccEEEEeccccccceeec--CCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEe
Confidence            44444444333444332  33789999999865544433  344 4777888889998754331        1       


Q ss_pred             ---------------Ce-----------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcc-ccccccch
Q 035738          234 ---------------CM-----------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSI-ESKSNSDS  286 (333)
Q Consensus       234 ---------------gv-----------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~-~~~~~~~~  286 (333)
                                     |.           -+|.+++++.+.++|..+...+.||..++.............. ........
T Consensus       150 ~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (297)
T COG3315         150 VDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMR  229 (297)
T ss_pred             ccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhcc
Confidence                           10           7788999999999999999999999887776542221100000 00000000


Q ss_pred             --hhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEE
Q 035738          287 --DVLMMIQSPGGKERTRHEFMTLATGAGFSGISC  319 (333)
Q Consensus       287 --d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~  319 (333)
                        +.....  ..-......++..++.+.||..+..
T Consensus       230 ~~~~~~~e--~~~~~~~~~e~~~~l~~~g~~~~~~  262 (297)
T COG3315         230 GEDLDRGE--LVYFGDDPAEIETWLAERGWRSTLN  262 (297)
T ss_pred             cccccccc--ceeccCCHHHHHHHHHhcCEEEEec
Confidence              000000  0111235789999999999987766

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=94.21  E-value=0.091  Score=46.70  Aligned_cols=51  Identities=14%  Similarity=0.380  Sum_probs=40.5

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ...+++.++ ......|+|||+|.|.++..|++..  .++++++. +..++..++
T Consensus        19 ~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~   70 (262)
T PF00398_consen   19 ADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKE   70 (262)
T ss_dssp             HHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHH
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHH
Confidence            456666666 7788999999999999999999988  67888888 666655443

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance

Probab=94.20  E-value=0.048  Score=36.23  Aligned_cols=47  Identities=19%  Similarity=0.357  Sum_probs=39.4

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      ++.++..|.+.   ++.|..+||+.+++    ++..+.++++-|...|++.+..
T Consensus         5 q~~iL~~l~~~---~~~~~~~la~~~~~----~~~~~t~~i~~L~~~g~I~r~~   51 (59)
T PF01047_consen    5 QFRILRILYEN---GGITQSELAEKLGI----SRSTVTRIIKRLEKKGLIERER   51 (59)
T ss_dssp             HHHHHHHHHHH---SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecc
Confidence            34455666766   48999999999999    9999999999999999999873

This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=94.19  E-value=0.18  Score=43.18  Aligned_cols=116  Identities=13%  Similarity=0.111  Sum_probs=71.4

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhH----hhhCCCCCCe---------------------EEEcc
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHV----IEHVPPHPCM---------------------WILHD  240 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~----~~~a~~~~gv---------------------~vLh~  240 (333)
                      +.++.+||-+|..+|.+...+..- -|+-.+..++. |.+    +..|++++|+                     .++.+
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D  150 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD  150 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence            678899999999999999998884 45777888887 543    4444444443                     56666


Q ss_pred             CCh-hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEE
Q 035738          241 WND-EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISC  319 (333)
Q Consensus       241 ~~~-~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~  319 (333)
                      ... +++.-+..++..-||+||.+++.=-...-+...+                   . .-...+=.+.|++.||++.+.
T Consensus       151 VaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~-------------------p-~~vf~~e~~~L~~~~~~~~e~  210 (229)
T PF01269_consen  151 VAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTAD-------------------P-EEVFAEEVKKLKEEGFKPLEQ  210 (229)
T ss_dssp             -SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSS-------------------H-HHHHHHHHHHHHCTTCEEEEE
T ss_pred             CCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCC-------------------H-HHHHHHHHHHHHHcCCChheE
Confidence            653 3445566777789999999887643211111000                   0 001223345668889999888


Q ss_pred             eecC
Q 035738          320 ERAI  323 (333)
Q Consensus       320 ~~~~  323 (333)
                      ....
T Consensus       211 i~Le  214 (229)
T PF01269_consen  211 ITLE  214 (229)
T ss_dssp             EE-T
T ss_pred             eccC
Confidence            8764

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor

Probab=94.18  E-value=0.11  Score=33.29  Aligned_cols=43  Identities=23%  Similarity=0.362  Sum_probs=37.6

Q ss_pred             hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +++.|.+.   ++.|+.+|++.+++    .+..+.+.|..|...|++.+.
T Consensus         5 il~~l~~~---~~~s~~~l~~~l~~----s~~tv~~~l~~L~~~g~i~~~   47 (53)
T smart00420        5 ILELLAQQ---GKVSVEELAELLGV----SEMTIRRDLNKLEEQGLLTRV   47 (53)
T ss_pred             HHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence            45566654   47999999999999    999999999999999999986

>PRK11050 manganese transport regulator MntR; Provisional

Probab=94.17  E-value=0.23  Score=40.17  Aligned_cols=79  Identities=20%  Similarity=0.213  Sum_probs=56.0

Q ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC
Q 035738           10 DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA   89 (333)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~   89 (333)
                      .+.|+.+...-.....-..+.     -|...+...   ++.+..+||+.+++    ++..+.++++.|...|++.+.   
T Consensus        20 ~~~~~~~~~~~~~~~~e~~l~-----~I~~~l~~~---~~~t~~eLA~~l~i----s~stVsr~l~~Le~~GlI~r~---   84 (152)
T PRK11050         20 VEGFRQVREAHRRELIEDYVE-----LIADLIAEV---GEARQVDIAARLGV----SQPTVAKMLKRLARDGLVEMR---   84 (152)
T ss_pred             HHHHHHHHHHHhHHHHHHHHH-----HHHHHHHhc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe---
Confidence            345666665555444444443     255566654   48999999999999    999999999999999999975   


Q ss_pred             CCcccccccccccccc
Q 035738           90 SGARRLYSLNSVSKYY  105 (333)
Q Consensus        90 ~~~~~~y~~t~~~~~l  105 (333)
                        ....+.+|+.+..+
T Consensus        85 --~~~~v~LT~~G~~l   98 (152)
T PRK11050         85 --PYRGVFLTPEGEKL   98 (152)
T ss_pred             --cCCceEECchHHHH
Confidence              23456666665443

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=94.12  E-value=0.11  Score=45.79  Aligned_cols=49  Identities=12%  Similarity=0.321  Sum_probs=37.1

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhC
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHV  229 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a  229 (333)
                      ...+++... ..+..+|+|||+|.|.++..|+++...  ++++++ +..++..
T Consensus        19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~--v~aiEiD~~l~~~L   68 (259)
T COG0030          19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAAR--VTAIEIDRRLAEVL   68 (259)
T ss_pred             HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCe--EEEEEeCHHHHHHH
Confidence            456777665 666889999999999999999999876  555666 4444443

>PRK11512 DNA-binding transcriptional repressor MarR; Provisional

Probab=94.07  E-value=0.21  Score=39.91  Aligned_cols=45  Identities=22%  Similarity=0.155  Sum_probs=39.1

Q ss_pred             ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      .++..|...   +++|..+||+.+++    ++..+.++++-|...|+|.+.+
T Consensus        44 ~vL~~l~~~---~~~t~~eLa~~l~i----~~~tvsr~l~~Le~~GlI~R~~   88 (144)
T PRK11512         44 KVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLP   88 (144)
T ss_pred             HHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc
Confidence            446666654   48999999999999    9999999999999999999874

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=94.03  E-value=0.2  Score=41.77  Aligned_cols=45  Identities=18%  Similarity=0.146  Sum_probs=35.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCe---------EEEeec-hhHhhhCCCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIK---------GINFDL-PHVIEHVPPH  232 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~~  232 (333)
                      +++...|+|-=||+|.++.+.+...++..         +++.|+ +.+++.++++
T Consensus        26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N   80 (179)
T PF01170_consen   26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAREN   80 (179)
T ss_dssp             --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHH
T ss_pred             CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHH
Confidence            66778999999999999999887777666         899999 8888877654

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK11014 transcriptional repressor NsrR; Provisional

Probab=94.03  E-value=0.085  Score=42.14  Aligned_cols=60  Identities=13%  Similarity=0.136  Sum_probs=45.2

Q ss_pred             HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccc
Q 035738           27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN   99 (333)
Q Consensus        27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t   99 (333)
                      +++++.+.++.+   .   ++.+.+.++||+.+|+    ++..+++.|+.|...|+++..+  | .++.|.+.
T Consensus         9 YAl~~~i~la~~---~---~g~~~s~~~ia~~~~i----s~~~vrk~l~~L~~~Glv~s~~--G-~~GG~~l~   68 (141)
T PRK11014          9 YGLRALIYMASL---P---EGRMTSISEVTEVYGV----SRNHMVKIINQLSRAGYVTAVR--G-KNGGIRLG   68 (141)
T ss_pred             HHHHHHHHHhcC---C---CCCccCHHHHHHHHCc----CHHHHHHHHHHHHhCCEEEEec--C-CCCCeeec
Confidence            455555554432   1   2247899999999999    9999999999999999999873  2 24567765

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=93.78  E-value=0.51  Score=41.53  Aligned_cols=102  Identities=14%  Similarity=0.181  Sum_probs=65.4

Q ss_pred             HHHHHHhhhhhh----hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC---CC-
Q 035738          165 HFNTVMYNYTSL----VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH---PC-  234 (333)
Q Consensus       165 ~f~~~m~~~~~~----~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~---~g-  234 (333)
                      .|..+|...+..    -...++..++ ..++.+|++-|.|+|.++.+++++ .|.-+.+-+|. ..-.+.+++.   .+ 
T Consensus        77 LWTl~LphRTQI~Yt~Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi  155 (314)
T KOG2915|consen   77 LWTLALPHRTQILYTPDIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI  155 (314)
T ss_pred             HhhhhccCcceEEecccHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC
Confidence            344555544442    2345666666 888999999999999999999986 47778888887 3344444331   11 


Q ss_pred             ---e--------------------EEEccCChhHHHHHHHHHHHhCCCCc-EEEEEeee
Q 035738          235 ---M--------------------WILHDWNDEHCLKLLKNCYKSIPEDG-KVIAVELM  269 (333)
Q Consensus       235 ---v--------------------~vLh~~~~~~~~~lL~~~~~~L~pgG-~l~i~e~~  269 (333)
                         +                    .|+-|++.+.  ..+..++++|+.+| +++.+.++
T Consensus       156 ~~~vt~~hrDVc~~GF~~ks~~aDaVFLDlPaPw--~AiPha~~~lk~~g~r~csFSPC  212 (314)
T KOG2915|consen  156 GDNVTVTHRDVCGSGFLIKSLKADAVFLDLPAPW--EAIPHAAKILKDEGGRLCSFSPC  212 (314)
T ss_pred             CcceEEEEeecccCCccccccccceEEEcCCChh--hhhhhhHHHhhhcCceEEeccHH
Confidence               1                    4555566554  45666666777654 55555554

>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea

Probab=93.72  E-value=0.096  Score=35.88  Aligned_cols=59  Identities=15%  Similarity=0.220  Sum_probs=43.6

Q ss_pred             hhhHhhhcCCCCCCCHHHHHHHhCCCCCCC--cccHHHHHHHHhcccceeeeccCCCcccccccccccc
Q 035738           37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDA--PMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSK  103 (333)
Q Consensus        37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~--~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~  103 (333)
                      |++.|.+.+  +|++..+|++.+... +.+  +..+++.|++|...|++.+.     ..+.+.+|+.+.
T Consensus         3 IL~~L~~~~--~P~g~~~l~~~L~~~-g~~~se~avRrrLr~me~~Glt~~~-----g~~G~~iT~~G~   63 (66)
T PF08461_consen    3 ILRILAESD--KPLGRKQLAEELKLR-GEELSEEAVRRRLRAMERDGLTRKV-----GRQGRIITEKGL   63 (66)
T ss_pred             HHHHHHHcC--CCCCHHHHHHHHHhc-ChhhhHHHHHHHHHHHHHCCCcccc-----CCcccccCHHHH
Confidence            567777764  799999999999762 223  58899999999999987764     234456776543

>COG4742 Predicted transcriptional regulator [Transcription]

Probab=93.68  E-value=0.082  Score=46.35  Aligned_cols=67  Identities=15%  Similarity=0.191  Sum_probs=59.8

Q ss_pred             HHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccccccc
Q 035738           28 AMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVP  107 (333)
Q Consensus        28 ~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~  107 (333)
                      .+....+..|+-.|.+    ||.|.+||-..+++    ++..+..-++-|...|++.++      ++.|++|..+..++.
T Consensus         9 if~SekRk~lLllL~e----gPkti~EI~~~l~v----s~~ai~pqiKkL~~~~LV~~~------~~~Y~LS~~G~iiv~   74 (260)
T COG4742           9 LFLSEKRKDLLLLLKE----GPKTIEEIKNELNV----SSSAILPQIKKLKDKGLVVQE------GDRYSLSSLGKIIVE   74 (260)
T ss_pred             HHccHHHHHHHHHHHh----CCCCHHHHHHHhCC----CcHHHHHHHHHHhhCCCEEec------CCEEEecchHHHHHH
Confidence            5566778899999998    59999999999999    999999999999999999986      899999999987665


Q ss_pred             C
Q 035738          108 N  108 (333)
Q Consensus       108 ~  108 (333)
                      .
T Consensus        75 k   75 (260)
T COG4742          75 K   75 (260)
T ss_pred             H
Confidence            4

>TIGR00122 birA_repr_reg BirA biotin operon repressor domain

Probab=93.61  E-value=0.13  Score=35.53  Aligned_cols=54  Identities=13%  Similarity=0.277  Sum_probs=43.0

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS  100 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~  100 (333)
                      ++.++..|.+    ++.|..+||+++|+    ....+++-++.|...|+....     .+..|.+.+
T Consensus         2 ~~~il~~L~~----~~~~~~eLa~~l~v----S~~tv~~~l~~L~~~g~~i~~-----~~~g~~l~~   55 (69)
T TIGR00122         2 PLRLLALLAD----NPFSGEKLGEALGM----SRTAVNKHIQTLREWGVDVLT-----VGKGYRLPP   55 (69)
T ss_pred             hHHHHHHHHc----CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe-----cCCceEecC
Confidence            3457778887    48899999999999    999999999999999996654     145565543

This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=93.58  E-value=0.17  Score=42.15  Aligned_cols=45  Identities=16%  Similarity=0.217  Sum_probs=40.7

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..|+++|..+   |++|.++||+.+|+    +...+++.|..|...|++...
T Consensus        25 ~~Vl~~L~~~---g~~tdeeLA~~Lgi----~~~~VRk~L~~L~e~gLv~~~   69 (178)
T PRK06266         25 FEVLKALIKK---GEVTDEEIAEQTGI----KLNTVRKILYKLYDARLADYK   69 (178)
T ss_pred             hHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence            3488888886   59999999999999    999999999999999999954

>COG2345 Predicted transcriptional regulator [Transcription]

Probab=93.54  E-value=0.084  Score=45.07  Aligned_cols=63  Identities=27%  Similarity=0.420  Sum_probs=48.2

Q ss_pred             ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCC---Ccccccccccccccc
Q 035738           36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDAS---GARRLYSLNSVSKYY  105 (333)
Q Consensus        36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~---~~~~~y~~t~~~~~l  105 (333)
                      -|...|.++   ||.|+.|||+++|+    ++..+++.|..|.+.|++......+   -..-.|++|..+..-
T Consensus        15 ~il~lL~~~---g~~sa~elA~~Lgi----s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~~   80 (218)
T COG2345          15 RILELLKKS---GPVSADELAEELGI----SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGREQ   80 (218)
T ss_pred             HHHHHHhcc---CCccHHHHHHHhCC----CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchhh
Confidence            355566766   59999999999999    9999999999999999998764211   113348887776643

>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed

Probab=93.43  E-value=0.11  Score=42.16  Aligned_cols=47  Identities=19%  Similarity=0.142  Sum_probs=40.3

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV  101 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~  101 (333)
                      ++.|+++||+..++    ++..++++|..|...|+++-..  | .+|.|.++.-
T Consensus        23 ~~~s~~eIA~~~~i----s~~~L~kIl~~L~~aGlv~S~r--G-~~GGy~La~~   69 (153)
T PRK11920         23 KLSRIPEIARAYGV----SELFLFKILQPLVEAGLVETVR--G-RNGGVRLGRP   69 (153)
T ss_pred             CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec--C-CCCCeeecCC
Confidence            47899999999999    9999999999999999999873  3 3677887643

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=93.43  E-value=0.4  Score=43.41  Aligned_cols=41  Identities=17%  Similarity=0.140  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPP  231 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~  231 (333)
                      ..+-|||||||+|-++.-.+++.. .++..++...|.+.|++
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~MAqyA~~  217 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASEMAQYARK  217 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhHHHHHHHH
Confidence            456799999999999887666553 47888888888888775

>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria

Probab=93.42  E-value=0.13  Score=35.07  Aligned_cols=36  Identities=19%  Similarity=0.212  Sum_probs=30.4

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      =|.|+.|||+.+|++   ++..+.+.|++|...|++++.
T Consensus        24 ~~Pt~rEIa~~~g~~---S~~tv~~~L~~Le~kG~I~r~   59 (65)
T PF01726_consen   24 YPPTVREIAEALGLK---STSTVQRHLKALERKGYIRRD   59 (65)
T ss_dssp             S---HHHHHHHHTSS---SHHHHHHHHHHHHHTTSEEEG
T ss_pred             CCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCcCccCC
Confidence            377999999999993   599999999999999999986

The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=93.24  E-value=0.8  Score=39.09  Aligned_cols=42  Identities=12%  Similarity=0.164  Sum_probs=37.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ...++.||||-+|.+...+++.+|...++..|+ +..++.|.+
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~   58 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIR   58 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHH
Confidence            445599999999999999999999999999998 888877764

>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial

Probab=93.23  E-value=0.12  Score=40.66  Aligned_cols=46  Identities=24%  Similarity=0.277  Sum_probs=38.3

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS  100 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~  100 (333)
                      ++.|+.|||+++|+    ++..+.+.|+.|...|++....  | ..+.|.+..
T Consensus        24 ~~~s~~eia~~l~i----s~~~v~~~l~~L~~~Gli~~~~--g-~~ggy~l~~   69 (130)
T TIGR02944        24 QPYSAAEIAEQTGL----NAPTVSKILKQLSLAGIVTSKR--G-VEGGYTLAR   69 (130)
T ss_pred             CCccHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecC--C-CCCChhhcC
Confidence            58999999999999    9999999999999999998641  2 245677643

The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.

>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor

Probab=93.21  E-value=0.17  Score=33.72  Aligned_cols=42  Identities=19%  Similarity=0.335  Sum_probs=36.2

Q ss_pred             hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      |+..|..    ++.|..+|++.+|+    +...+.+.|+.|...|++...
T Consensus         2 il~~l~~----~~~~~~~i~~~l~i----s~~~v~~~l~~L~~~g~i~~~   43 (66)
T smart00418        2 ILKLLAE----GELCVCELAEILGL----SQSTVSHHLKKLREAGLVESR   43 (66)
T ss_pred             HHHHhhc----CCccHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence            3455553    48999999999999    899999999999999999975

>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein

Probab=93.15  E-value=0.14  Score=43.68  Aligned_cols=59  Identities=27%  Similarity=0.344  Sum_probs=47.2

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV  101 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~  101 (333)
                      .+..++..|.+.   ++.+..+||+.+++    ++.-+.+.|+.|...|++.+..   ..+..|.+|+.
T Consensus       144 ~~~~IL~~l~~~---g~~s~~eia~~l~i----s~stv~r~L~~Le~~GlI~r~~---~r~~~~~lT~~  202 (203)
T TIGR01884       144 EELKVLEVLKAE---GEKSVKNIAKKLGK----SLSTISRHLRELEKKGLVEQKG---RKGKRYSLTKL  202 (203)
T ss_pred             HHHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEc---CCccEEEeCCC
Confidence            345677777775   48999999999999    9999999999999999999872   12455777654

Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.

>PRK06474 hypothetical protein; Provisional

Probab=93.13  E-value=0.16  Score=42.33  Aligned_cols=73  Identities=12%  Similarity=0.205  Sum_probs=55.5

Q ss_pred             HHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeeecc---CCCcccccccccc
Q 035738           26 PMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECSLD---ASGARRLYSLNSV  101 (333)
Q Consensus        26 ~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~~y~~t~~  101 (333)
                      ..+|.-..++.|++.|...+  ++.|+.+|++.+ ++    +..-+.|.|+.|...|+|.....   .|.....|++++.
T Consensus         5 ~~~La~p~R~~Il~~L~~~~--~~~ta~el~~~l~~i----s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~   78 (178)
T PRK06474          5 AEILMHPVRMKICQVLMRNK--EGLTPLELVKILKDV----PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEE   78 (178)
T ss_pred             HHhhCCHHHHHHHHHHHhCC--CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEeccc
Confidence            45677778899999998753  259999999999 57    77889999999999999998742   1112345777765


Q ss_pred             ccc
Q 035738          102 SKY  104 (333)
Q Consensus       102 ~~~  104 (333)
                      .-.
T Consensus        79 ~~~   81 (178)
T PRK06474         79 DAK   81 (178)
T ss_pred             eee
Confidence            543

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=93.08  E-value=0.093  Score=44.53  Aligned_cols=75  Identities=17%  Similarity=0.259  Sum_probs=50.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC-e-----------------EEEccCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC-M-----------------WILHDWN  242 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g-v-----------------~vLh~~~  242 (333)
                      ..+..+|+|.-||.|.++..+++..+..+++..|+ |..++..+++      .+ +                 .++-.++
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp  178 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP  178 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence            44678999999999999999999888888999999 8888766542      11 1                 4444444


Q ss_pred             hhHHHHHHHHHHHhCCCCcEE
Q 035738          243 DEHCLKLLKNCYKSIPEDGKV  263 (333)
Q Consensus       243 ~~~~~~lL~~~~~~L~pgG~l  263 (333)
                      . .+...|..+.+.+++||.+
T Consensus       179 ~-~~~~fl~~~~~~~~~~g~i  198 (200)
T PF02475_consen  179 E-SSLEFLDAALSLLKEGGII  198 (200)
T ss_dssp             S-SGGGGHHHHHHHEEEEEEE
T ss_pred             H-HHHHHHHHHHHHhcCCcEE
Confidence            3 2346777777777777665

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]

Probab=93.06  E-value=0.15  Score=41.38  Aligned_cols=50  Identities=20%  Similarity=0.234  Sum_probs=44.5

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV  106 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~  106 (333)
                      |++...+||+.+++    .|.-+...++-|...|++.+.     ..+.+.+|+.+....
T Consensus        23 ~~~~~~diA~~L~V----sp~sVt~ml~rL~~~GlV~~~-----~y~gi~LT~~G~~~a   72 (154)
T COG1321          23 GFARTKDIAERLKV----SPPSVTEMLKRLERLGLVEYE-----PYGGVTLTEKGREKA   72 (154)
T ss_pred             CcccHHHHHHHhCC----CcHHHHHHHHHHHHCCCeEEe-----cCCCeEEChhhHHHH
Confidence            69999999999999    999999999999999999997     378889998876444

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=93.02  E-value=0.2  Score=45.36  Aligned_cols=53  Identities=19%  Similarity=0.231  Sum_probs=44.9

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ..++++.+. ..++..+||.=+|.|..+..++++.|+.+++++|. |.+++.+++
T Consensus         9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~   62 (305)
T TIGR00006         9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKE   62 (305)
T ss_pred             HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence            456677665 56677999999999999999999988899999999 888887764

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure

Probab=92.88  E-value=0.077  Score=38.80  Aligned_cols=62  Identities=23%  Similarity=0.292  Sum_probs=46.3

Q ss_pred             hhhHhhhcCCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeeeccC-CCccccccccccccccc
Q 035738           37 IFEIIDKAGPGAKLSASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYV  106 (333)
Q Consensus        37 lfd~L~~~~~~g~~t~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~  106 (333)
                      |+..|..    |+....||.+.+ |+    ++..|.+-|+.|...|++.+.... .+..-.|++|+.+..+.
T Consensus        10 IL~~l~~----g~~rf~el~~~l~~i----s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~   73 (90)
T PF01638_consen   10 ILRALFQ----GPMRFSELQRRLPGI----SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL   73 (90)
T ss_dssp             HHHHHTT----SSEEHHHHHHHSTTS-----HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred             HHHHHHh----CCCcHHHHHHhcchh----HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence            4455565    599999999999 89    999999999999999999986421 12234588888886655

The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=92.86  E-value=0.18  Score=43.13  Aligned_cols=32  Identities=22%  Similarity=0.448  Sum_probs=30.2

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL  222 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~  222 (333)
                      ..+++|||.|.|.-+..++-.+|+++++.+|.
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles   99 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLES   99 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEcc
Confidence            68999999999999999999999999998885

>smart00344 HTH_ASNC helix_turn_helix ASNC type

Probab=92.81  E-value=0.15  Score=38.56  Aligned_cols=46  Identities=20%  Similarity=0.344  Sum_probs=41.4

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVEC   85 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~   85 (333)
                      .+..|+..|.+.   ++.|..+||+++|+    ++..+.+.++.|...|++.+
T Consensus         4 ~D~~il~~L~~~---~~~~~~~la~~l~~----s~~tv~~~l~~L~~~g~i~~   49 (108)
T smart00344        4 IDRKILEELQKD---ARISLAELAKKVGL----SPSTVHNRVKRLEEEGVIKG   49 (108)
T ss_pred             HHHHHHHHHHHh---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeec
Confidence            456788888886   48999999999999    99999999999999999994

AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli

>PRK15431 ferrous iron transport protein FeoC; Provisional

Probab=92.66  E-value=0.2  Score=35.20  Aligned_cols=44  Identities=18%  Similarity=0.288  Sum_probs=39.5

Q ss_pred             hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      |=|.|+.+   |..++.+||.++++    +++.++-+|..++.+|-+++.+
T Consensus         7 lRd~l~~~---gr~s~~~Ls~~~~~----p~~~VeaMLe~l~~kGkverv~   50 (78)
T PRK15431          7 VRDLLALR---GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRIQ   50 (78)
T ss_pred             HHHHHHHc---CcccHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeec
Confidence            44678876   59999999999999    9999999999999999999873

>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor

Probab=92.64  E-value=0.21  Score=32.80  Aligned_cols=34  Identities=29%  Similarity=0.336  Sum_probs=31.8

Q ss_pred             CC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           49 KL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        49 ~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .. |..+||+.+|+    +...+++.|+.|...|++...
T Consensus        19 ~l~s~~~la~~~~v----s~~tv~~~l~~L~~~g~i~~~   53 (60)
T smart00345       19 KLPSERELAAQLGV----SRTTVREALSRLEAEGLVQRR   53 (60)
T ss_pred             cCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence            55 89999999999    999999999999999999876

>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors

Probab=92.59  E-value=0.19  Score=34.57  Aligned_cols=45  Identities=24%  Similarity=0.377  Sum_probs=38.3

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +..++..+...    +.+..||++.+|+    +...+.+.|+.|...|++...
T Consensus         9 ~~~il~~l~~~----~~~~~ei~~~~~i----~~~~i~~~l~~L~~~g~i~~~   53 (78)
T cd00090           9 RLRILRLLLEG----PLTVSELAERLGL----SQSTVSRHLKKLEEAGLVESR   53 (78)
T ss_pred             HHHHHHHHHHC----CcCHHHHHHHHCc----CHhHHHHHHHHHHHCCCeEEE
Confidence            34456666663    5899999999999    899999999999999999976

ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.

>COG4189 Predicted transcriptional regulator [Transcription]

Probab=92.58  E-value=0.21  Score=42.57  Aligned_cols=55  Identities=13%  Similarity=0.280  Sum_probs=49.5

Q ss_pred             HHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           26 PMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        26 ~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      -++|...++..|++.|...   ||+.+.|||+++|+    ++.-+.--+..|...|+++...
T Consensus        17 ~kalaS~vRv~Il~lL~~k---~plNvneiAe~lgL----pqst~s~~ik~Le~aGlirT~t   71 (308)
T COG4189          17 LKALASKVRVAILQLLHRK---GPLNVNEIAEALGL----PQSTMSANIKVLEKAGLIRTET   71 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHhCC----chhhhhhhHHHHHhcCceeeee
Confidence            4578889999999999987   59999999999999    8888999999999999998764

>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family

Probab=92.31  E-value=0.22  Score=33.35  Aligned_cols=35  Identities=29%  Similarity=0.439  Sum_probs=32.7

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ++.+..+||+.+|+    .+.-+...++-|...|+++..
T Consensus        21 ~~v~~~~iA~~L~v----s~~tvt~ml~~L~~~GlV~~~   55 (60)
T PF01325_consen   21 GPVRTKDIAERLGV----SPPTVTEMLKRLAEKGLVEYE   55 (60)
T ss_dssp             SSBBHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred             CCccHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEec
Confidence            69999999999999    999999999999999999986

The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=92.21  E-value=5.2  Score=35.61  Aligned_cols=63  Identities=16%  Similarity=0.117  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEee
Q 035738          245 HCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCER  321 (333)
Q Consensus       245 ~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~  321 (333)
                      ...+.|+.+.+.|||||.++=+-+..-...            +..  ......-+.+.+|++++.+..||++++-..
T Consensus       180 Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~------------~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  180 NIIEYIETIEHLLKPGGYWINFGPLLYHFE------------PMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             HHHHHHHHHHHHhccCCEEEecCCccccCC------------CCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence            467899999999999996654444332211            000  000123577899999999999999887654

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=92.17  E-value=1.2  Score=40.25  Aligned_cols=23  Identities=17%  Similarity=0.205  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHhCCCCcEEEEEee
Q 035738          246 CLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       246 ~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      -.++|.++-..++||..++|+|.
T Consensus       221 Tt~FLl~Lt~~~~~GslLLVvDS  243 (315)
T PF11312_consen  221 TTKFLLRLTDICPPGSLLLVVDS  243 (315)
T ss_pred             HHHHHHHHHhhcCCCcEEEEEcC
Confidence            35789999999999999999997

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=92.04  E-value=0.2  Score=40.79  Aligned_cols=45  Identities=9%  Similarity=0.068  Sum_probs=39.8

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..|+++|..+   |.+|-+|||+.+|+    +..-++++|..|...|++.+.
T Consensus        17 v~Vl~aL~~~---~~~tdEeLa~~Lgi----~~~~VRk~L~~L~e~~Lv~~~   61 (158)
T TIGR00373        17 GLVLFSLGIK---GEFTDEEISLELGI----KLNEVRKALYALYDAGLADYK   61 (158)
T ss_pred             HHHHHHHhcc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceee
Confidence            4578888865   58999999999999    999999999999999999654

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=91.89  E-value=0.92  Score=35.47  Aligned_cols=76  Identities=14%  Similarity=0.249  Sum_probs=48.3

Q ss_pred             EEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCCC-----C-e-------------------------EEEcc
Q 035738          194 LVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPHP-----C-M-------------------------WILHD  240 (333)
Q Consensus       194 vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~-----g-v-------------------------~vLh~  240 (333)
                      ++|+|||+|... .+....+. ..++++|. +.++..++...     + +                         ...+.
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  130 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH  130 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence            999999999987 33443333 46777887 55544322110     0 1                         11111


Q ss_pred             CChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738          241 WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPE  272 (333)
Q Consensus       241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~  272 (333)
                      +.+  ....++++.+.++|+|.+++.+.....
T Consensus       131 ~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~  160 (257)
T COG0500         131 LLP--PAKALRELLRVLKPGGRLVLSDLLRDG  160 (257)
T ss_pred             cCC--HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence            111  358999999999999999998886554

>COG4190 Predicted transcriptional regulator [Transcription]

Probab=91.83  E-value=0.28  Score=37.97  Aligned_cols=51  Identities=18%  Similarity=0.238  Sum_probs=44.8

Q ss_pred             HHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           29 MQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        29 l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +.+--.+.|.+.|++.   +|.|+.|+|+.+|-    +...+.|-|+.|...|++...
T Consensus        61 vLsp~nleLl~~Ia~~---~P~Si~ElAe~vgR----dv~nvhr~Ls~l~~~GlI~fe  111 (144)
T COG4190          61 VLSPRNLELLELIAQE---EPASINELAELVGR----DVKNVHRTLSTLADLGLIFFE  111 (144)
T ss_pred             HhChhHHHHHHHHHhc---CcccHHHHHHHhCc----chHHHHHHHHHHHhcCeEEEe
Confidence            3344567788899987   59999999999999    999999999999999999987

>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators

Probab=91.72  E-value=0.4  Score=32.14  Aligned_cols=33  Identities=24%  Similarity=0.278  Sum_probs=30.6

Q ss_pred             CCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           50 LSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        50 ~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .|..+||+.+|+    +...+++.|..|...|+++..
T Consensus        26 ~~~~~la~~~~i----s~~~v~~~l~~L~~~G~i~~~   58 (66)
T cd07377          26 PSERELAEELGV----SRTTVREALRELEAEGLVERR   58 (66)
T ss_pred             CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence            459999999999    999999999999999999875

This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is

>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets

Probab=91.59  E-value=0.3  Score=31.81  Aligned_cols=40  Identities=15%  Similarity=0.333  Sum_probs=32.9

Q ss_pred             ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhccc
Q 035738           36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYS   81 (333)
Q Consensus        36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g   81 (333)
                      .|+..|.+.+  ++.|+++||+.+++    +.+-+++-+..|...|
T Consensus         4 ~il~~L~~~~--~~it~~eLa~~l~v----S~rTi~~~i~~L~~~~   43 (55)
T PF08279_consen    4 QILKLLLESK--EPITAKELAEELGV----SRRTIRRDIKELREWG   43 (55)
T ss_dssp             HHHHHHHHTT--TSBEHHHHHHHCTS-----HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcC--CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCC
Confidence            4566674432  57999999999999    9999999999999999

The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=91.53  E-value=0.27  Score=44.48  Aligned_cols=54  Identities=26%  Similarity=0.260  Sum_probs=41.5

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ..++++.+. ..+...+||.=-|.|.++..+++++|+.+++++|. |.+++.+++.
T Consensus         9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~   63 (310)
T PF01795_consen    9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKER   63 (310)
T ss_dssp             HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCC
T ss_pred             HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHH
Confidence            456777776 67778999999999999999999999999999999 8898777653

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=91.42  E-value=0.59  Score=40.79  Aligned_cols=65  Identities=12%  Similarity=0.185  Sum_probs=48.4

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCCCCeEEEccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~gv~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      ...+.+|+|||||--=++.......|+..+++.|+.                    ...+++++.+...|++.+.+.+.|
T Consensus       103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID--------------------~~~ve~l~~~l~~l~~~~~~~v~D  162 (251)
T PF07091_consen  103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDID--------------------SQLVEFLNAFLAVLGVPHDARVRD  162 (251)
T ss_dssp             S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESB--------------------HHHHHHHHHHHHHTT-CEEEEEE-
T ss_pred             CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCC--------------------HHHHHHHHHHHHhhCCCcceeEee
Confidence            346899999999999999998988899999999973                    234468888889999999999998


Q ss_pred             eecCC
Q 035738          268 LMLPE  272 (333)
Q Consensus       268 ~~~~~  272 (333)
                      .....
T Consensus       163 l~~~~  167 (251)
T PF07091_consen  163 LLSDP  167 (251)
T ss_dssp             TTTSH
T ss_pred             eeccC
Confidence            87653

>PRK03573 transcriptional regulator SlyA; Provisional

Probab=91.04  E-value=0.58  Score=37.28  Aligned_cols=45  Identities=16%  Similarity=0.124  Sum_probs=37.7

Q ss_pred             hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      ++..|...+  ++.|..+||+.+++    ++..+.+.++-|...|+|.+..
T Consensus        36 vL~~l~~~~--~~~t~~eLa~~l~~----~~~tvt~~v~~Le~~GlV~r~~   80 (144)
T PRK03573         36 TLHNIHQLP--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLISRQT   80 (144)
T ss_pred             HHHHHHHcC--CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeec
Confidence            455555432  36899999999999    9999999999999999999974

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=90.81  E-value=0.23  Score=37.19  Aligned_cols=73  Identities=18%  Similarity=0.203  Sum_probs=24.9

Q ss_pred             EEEcCCccHHHHHHHHHCCCC---eEEEeec-h---hHhhhCCCC--C-Ce--------------------EEEccC--C
Q 035738          195 VDVGGGIGVTLQAITTKYPYI---KGINFDL-P---HVIEHVPPH--P-CM--------------------WILHDW--N  242 (333)
Q Consensus       195 lDVGgG~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~~--~-gv--------------------~vLh~~--~  242 (333)
                      ||||+..|..+..+++..+..   +++.+|. +   ...+..++.  . .+                    .++-+-  +
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~   80 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS   80 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence            689999999999988877654   5799998 5   233333321  1 11                    222222  2


Q ss_pred             hhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738          243 DEHCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       243 ~~~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      .+.+..-|+.+.+.|+|||.+++-|
T Consensus        81 ~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   81 YEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            3456677888888888988887765

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=90.75  E-value=4.6  Score=37.11  Aligned_cols=79  Identities=15%  Similarity=0.095  Sum_probs=55.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CCe----------------------EEEccC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PCM----------------------WILHDW  241 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~gv----------------------~vLh~~  241 (333)
                      ..++..|||==||||.++.+..-  -+++++|.|+ ..+++-++.+   -++                      .+..+.
T Consensus       195 v~~G~~vlDPFcGTGgiLiEagl--~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP  272 (347)
T COG1041         195 VKRGELVLDPFCGTGGILIEAGL--MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP  272 (347)
T ss_pred             cccCCEeecCcCCccHHHHhhhh--cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence            55778999999999999997654  3477899999 6788888764   111                      122221


Q ss_pred             C------------hhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          242 N------------DEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       242 ~------------~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      |            ++-..+.|+.+.++|++||++++.-+
T Consensus       273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         273 PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            1            22245678888888888888777655

>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators

Probab=90.64  E-value=0.42  Score=36.52  Aligned_cols=52  Identities=25%  Similarity=0.300  Sum_probs=40.4

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCC-CCcccHHHHHHHHhcccceeeec
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNK-DAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~-~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      +.-|++.|...+  ++.|++||.+++.-+.+ .+..-+.|.|+.|+..|++.+..
T Consensus         3 R~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~   55 (116)
T cd07153           3 RLAILEVLLESD--GHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIE   55 (116)
T ss_pred             HHHHHHHHHhCC--CCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEE
Confidence            445788887643  58999999999942111 17788999999999999999874

Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.

>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element

Probab=90.53  E-value=0.27  Score=36.14  Aligned_cols=46  Identities=24%  Similarity=0.332  Sum_probs=38.0

Q ss_pred             HHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738           52 ASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV  106 (333)
Q Consensus        52 ~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~  106 (333)
                      +.+||+.+|+    ++..+.+.++.|...|++.+.+     +..|.+|+.+..+.
T Consensus         2 ~~ela~~l~i----s~stvs~~l~~L~~~glI~r~~-----~~~~~lT~~g~~~~   47 (96)
T smart00529        2 TSEIAERLNV----SPPTVTQMLKKLEKDGLVEYEP-----YRGITLTEKGRRLA   47 (96)
T ss_pred             HHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEcC-----CCceEechhHHHHH
Confidence            4689999999    9999999999999999999972     34677777665443

iron dependent repressor

>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain

Probab=90.45  E-value=0.85  Score=33.67  Aligned_cols=44  Identities=14%  Similarity=0.116  Sum_probs=37.4

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN   99 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t   99 (333)
                      .++|..|||+.+|+    ++..+.|.|..|...|+|.+..    ..+.|+.+
T Consensus        46 ~~is~~eLa~~~g~----sr~tVsr~L~~Le~~GlI~r~~----~~~~~~~n   89 (95)
T TIGR01610        46 DRVTATVIAELTGL----SRTHVSDAIKSLARRRIIFRQG----MMGIVGVN   89 (95)
T ss_pred             CccCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeec----CCceeecC
Confidence            38999999999999    9999999999999999999861    13566655

This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.

>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=90.43  E-value=0.28  Score=28.24  Aligned_cols=31  Identities=26%  Similarity=0.368  Sum_probs=25.8

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccce
Q 035738           49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVV   83 (333)
Q Consensus        49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l   83 (333)
                      |+|-+|||+.+|+    .+.-+.|.|..|...|++
T Consensus         2 ~mtr~diA~~lG~----t~ETVSR~l~~l~~~glI   32 (32)
T PF00325_consen    2 PMTRQDIADYLGL----TRETVSRILKKLERQGLI   32 (32)
T ss_dssp             E--HHHHHHHHTS-----HHHHHHHHHHHHHTTSE
T ss_pred             CcCHHHHHHHhCC----cHHHHHHHHHHHHHcCCC
Confidence            5789999999999    999999999999988875

These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=90.38  E-value=0.85  Score=42.77  Aligned_cols=44  Identities=27%  Similarity=0.527  Sum_probs=31.2

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHH----HHHHHHHC---CCCeEEEeech
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVT----LQAITTKY---PYIKGINFDLP  223 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~----~~~l~~~~---p~~~~~~~D~~  223 (333)
                      ..+++.+. -....+|+|+|.|.|.-    ...|+.+.   |.+++|+++.|
T Consensus       100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~  150 (374)
T PF03514_consen  100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPP  150 (374)
T ss_pred             HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCC
Confidence            45666665 45678999999999963    33444443   77889999883

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=90.24  E-value=1.1  Score=42.04  Aligned_cols=76  Identities=11%  Similarity=0.179  Sum_probs=55.3

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC------CCe-------------------EE-EccCC
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH------PCM-------------------WI-LHDWN  242 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~gv-------------------~v-Lh~~~  242 (333)
                      ..+|||.-||+|..+.+++.+.++ -+++..|+ |..++.++++      .++                   .| +--+.
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDPfG  124 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDPFG  124 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCCCC
Confidence            368999999999999999998654 46889999 8888776543      111                   11 11122


Q ss_pred             hhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          243 DEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       243 ~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      .  ....+..+.+.+++||.|.|.-+
T Consensus       125 s--~~~fld~al~~~~~~glL~vTaT  148 (374)
T TIGR00308       125 T--PAPFVDSAIQASAERGLLLVTAT  148 (374)
T ss_pred             C--cHHHHHHHHHhcccCCEEEEEec
Confidence            1  13688899999999999999854

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG1378 Predicted transcriptional regulators [Transcription]

Probab=90.10  E-value=0.49  Score=41.56  Aligned_cols=59  Identities=17%  Similarity=0.173  Sum_probs=47.3

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS  100 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~  100 (333)
                      ..|..++-+|-..   |+.|+.|||+.+|+    +...+...|+.|...|++...+  | .+..|+.-+
T Consensus        16 ~yEa~vY~aLl~~---g~~tA~eis~~sgv----P~~kvY~vl~sLe~kG~v~~~~--g-~P~~y~av~   74 (247)
T COG1378          16 EYEAKVYLALLCL---GEATAKEISEASGV----PRPKVYDVLRSLEKKGLVEVIE--G-RPKKYRAVP   74 (247)
T ss_pred             HHHHHHHHHHHHh---CCccHHHHHHHcCC----CchhHHHHHHHHHHCCCEEeeC--C-CCceEEeCC
Confidence            3455666677765   59999999999999    8999999999999999999862  2 466777543

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=90.05  E-value=0.37  Score=44.76  Aligned_cols=80  Identities=16%  Similarity=0.176  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---------C------------------Ce---EEE
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---------P------------------CM---WIL  238 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~------------------gv---~vL  238 (333)
                      +...++|+|||.|.....+.. +...+.+++|. +.-+..+...         .                  ++   .+.
T Consensus       110 ~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~  188 (364)
T KOG1269|consen  110 PGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV  188 (364)
T ss_pred             ccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence            445899999999999887655 55566777777 4333332211         0                  11   444


Q ss_pred             ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738          239 HDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPE  272 (333)
Q Consensus       239 h~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~  272 (333)
                      .+.++..  .++++++++++|||.+++.|.+...
T Consensus       189 ~~~~~~~--~~y~Ei~rv~kpGG~~i~~e~i~~~  220 (364)
T KOG1269|consen  189 CHAPDLE--KVYAEIYRVLKPGGLFIVKEWIKTA  220 (364)
T ss_pred             ccCCcHH--HHHHHHhcccCCCceEEeHHHHHhh
Confidence            5555554  8999999999999999999987654

>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=90.04  E-value=0.64  Score=35.81  Aligned_cols=53  Identities=13%  Similarity=0.177  Sum_probs=47.0

Q ss_pred             HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +-=+..++..|.+.+.++   |..|..+++..+|+    +..-+.++++.|++-|-|...
T Consensus         7 ~eer~eLk~rIvElVRe~---GRiTi~ql~~~TGa----sR~Tvk~~lreLVa~G~l~~~   59 (127)
T PF06163_consen    7 PEEREELKARIVELVREH---GRITIKQLVAKTGA----SRNTVKRYLRELVARGDLYRH   59 (127)
T ss_pred             HHHHHHHHHHHHHHHHHc---CCccHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeC
Confidence            344567788899999998   59999999999999    999999999999999999975

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=89.77  E-value=5.4  Score=36.05  Aligned_cols=65  Identities=18%  Similarity=0.209  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEee
Q 035738          244 EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCER  321 (333)
Q Consensus       244 ~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~  321 (333)
                      ..+...|..+...|+|||.++=+-+..-.-....         +..    -..+-+.+.+++.++.+.-||.+++-..
T Consensus       273 ~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~---------g~~----~~~siEls~edl~~v~~~~GF~~~ke~~  337 (369)
T KOG2798|consen  273 HNILEYIDTIYKILKPGGVWINLGPLLYHFEDTH---------GVE----NEMSIELSLEDLKRVASHRGFEVEKERG  337 (369)
T ss_pred             HHHHHHHHHHHHhccCCcEEEeccceeeeccCCC---------CCc----ccccccccHHHHHHHHHhcCcEEEEeee
Confidence            4567899999999999999887766543211100         000    0124577899999999999999887553

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=89.41  E-value=0.47  Score=43.15  Aligned_cols=42  Identities=17%  Similarity=0.143  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHH-------CCCCeEEEeec-hhHhhhC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTK-------YPYIKGINFDL-PHVIEHV  229 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a  229 (333)
                      .....+|+|-.||+|.++.++.+.       .+..+++|+|+ +.++..+
T Consensus        44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la   93 (311)
T PF02384_consen   44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALA   93 (311)
T ss_dssp             T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHH
T ss_pred             ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHH
Confidence            556779999999999999998874       47888999999 6665544

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=89.39  E-value=0.75  Score=39.06  Aligned_cols=83  Identities=17%  Similarity=0.234  Sum_probs=44.5

Q ss_pred             CCCeEEEEcCCccHHHHH---HHHHC-CCCeEEEeec-hhHh--hhCCCC---CCe------------------------
Q 035738          190 NIKQLVDVGGGIGVTLQA---ITTKY-PYIKGINFDL-PHVI--EHVPPH---PCM------------------------  235 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~---l~~~~-p~~~~~~~D~-~~~~--~~a~~~---~gv------------------------  235 (333)
                      ++.+|+++|--.|..+.-   +++.. ++.+++++|+ ....  +..+.+   +.+                        
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~  111 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH  111 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence            468899999777766654   45555 7889999998 2221  111111   111                        


Q ss_pred             --EEEcc--CChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738          236 --WILHD--WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPE  272 (333)
Q Consensus       236 --~vLh~--~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~  272 (333)
                        .|.-+  .+.+.+.+.|+.....++||++++|.|+....
T Consensus       112 ~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~  152 (206)
T PF04989_consen  112 PVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIED  152 (206)
T ss_dssp             SEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHH
T ss_pred             ceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccc
Confidence              22222  22345678899999999999999999986543

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=88.89  E-value=0.4  Score=42.27  Aligned_cols=64  Identities=13%  Similarity=0.041  Sum_probs=42.4

Q ss_pred             hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEee
Q 035738          244 EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCER  321 (333)
Q Consensus       244 ~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~  321 (333)
                      +.-.+.++++.+.|||||.|++........          ...+-..+    ..-..+.+.+++.|+++||.+.+...
T Consensus       176 ~~y~~al~ni~~lLkpGG~Lil~~~l~~t~----------Y~vG~~~F----~~l~l~ee~v~~al~~aG~~i~~~~~  239 (256)
T PF01234_consen  176 DEYRRALRNISSLLKPGGHLILAGVLGSTY----------YMVGGHKF----PCLPLNEEFVREALEEAGFDIEDLEK  239 (256)
T ss_dssp             HHHHHHHHHHHTTEEEEEEEEEEEESS-SE----------EEETTEEE----E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEEEEcCcee----------EEECCEec----ccccCCHHHHHHHHHHcCCEEEeccc
Confidence            344689999999999999999988743220          00000000    11134689999999999999888774

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional

Probab=88.73  E-value=0.44  Score=40.87  Aligned_cols=53  Identities=19%  Similarity=0.221  Sum_probs=42.0

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV  106 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~  106 (333)
                      ..+|..+||+.+++    ++..+.+.|+.|...|++++...  +....+.+|+.+..++
T Consensus        20 ~~IS~~eLA~~L~i----S~~Tvsr~Lk~LEe~GlI~R~~~--~r~~~v~LTekG~~ll   72 (217)
T PRK14165         20 VKISSSEFANHTGT----SSKTAARILKQLEDEGYITRTIV--PRGQLITITEKGLDVL   72 (217)
T ss_pred             CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEEc--CCceEEEECHHHHHHH
Confidence            36899999999999    99999999999999999998731  1245566666665443

>PF14394 DUF4423: Domain of unknown function (DUF4423)

Probab=88.51  E-value=1  Score=37.26  Aligned_cols=47  Identities=15%  Similarity=0.111  Sum_probs=40.3

Q ss_pred             CCCHHHHHHHh--CCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccc
Q 035738           49 KLSASDIAAQL--TTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKY  104 (333)
Q Consensus        49 ~~t~~ela~~~--g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~  104 (333)
                      ..++++||+++  ++    ...-++.-|+.|..+|+++++     .++.|..|..+-.
T Consensus        39 ~~d~~~iak~l~p~i----s~~ev~~sL~~L~~~gli~k~-----~~g~y~~t~~~l~   87 (171)
T PF14394_consen   39 APDPEWIAKRLRPKI----SAEEVRDSLEFLEKLGLIKKD-----GDGKYVQTDKSLT   87 (171)
T ss_pred             CCCHHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEC-----CCCcEEEecceee
Confidence            34899999999  99    999999999999999999997     3578988875533

>PHA02943 hypothetical protein; Provisional

Probab=88.43  E-value=0.72  Score=36.75  Aligned_cols=43  Identities=21%  Similarity=0.163  Sum_probs=37.9

Q ss_pred             ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .+.+.|..    |..|..|||+++|+    +...++-.|..|...|.+.+.
T Consensus        15 eILE~Lk~----G~~TtseIAkaLGl----S~~qa~~~LyvLErEG~VkrV   57 (165)
T PHA02943         15 KTLRLLAD----GCKTTSRIANKLGV----SHSMARNALYQLAKEGMVLKV   57 (165)
T ss_pred             HHHHHHhc----CCccHHHHHHHHCC----CHHHHHHHHHHHHHcCceEEE
Confidence            45666733    58999999999999    999999999999999999987

>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional

Probab=88.35  E-value=0.64  Score=37.62  Aligned_cols=47  Identities=15%  Similarity=0.264  Sum_probs=42.6

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceee
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVEC   85 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~   85 (333)
                      ..+..|.+.|.+.   |..|..+||+++|+    ++..+++=++-|...|++..
T Consensus         9 ~~D~~Il~~Lq~d---~R~s~~eiA~~lgl----S~~tV~~Ri~rL~~~GvI~~   55 (153)
T PRK11179          9 NLDRGILEALMEN---ARTPYAELAKQFGV----SPGTIHVRVEKMKQAGIITG   55 (153)
T ss_pred             HHHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence            3577889999986   59999999999999    99999999999999999984

>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors

Probab=88.34  E-value=0.39  Score=36.12  Aligned_cols=43  Identities=23%  Similarity=0.351  Sum_probs=33.7

Q ss_pred             hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      |++.|..+   |.++-++||+.+|+    ++.-++++|..|...|++...
T Consensus        18 Il~~L~~~---~~l~de~la~~~~l----~~~~vRkiL~~L~~~~lv~~~   60 (105)
T PF02002_consen   18 ILDALLRK---GELTDEDLAKKLGL----KPKEVRKILYKLYEDGLVSYR   60 (105)
T ss_dssp             HHHHHHHH-----B-HHHHHHTT-S-----HHHHHHHHHHHHHHSS-EEE
T ss_pred             HHHHHHHc---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeEEE
Confidence            67888866   48999999999999    999999999999999999765

Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.

>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family

Probab=88.01  E-value=0.69  Score=35.03  Aligned_cols=51  Identities=18%  Similarity=0.206  Sum_probs=40.4

Q ss_pred             HHHhChhhHhh--hcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           32 VYELGIFEIID--KAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        32 a~~lglfd~L~--~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      ..+..++..|.  .. ++++.|..+||+.+++    ++..+.+.++.|...|++.+..
T Consensus        25 ~~q~~vL~~l~~~~~-~~~~~t~~eL~~~l~~----~~stvs~~i~~Le~kg~I~r~~   77 (109)
T TIGR01889        25 LEELLILYYLGKLEN-NEGKLTLKEIIKEILI----KQSALVKIIKKLSKKGYLSKER   77 (109)
T ss_pred             HHHHHHHHHHHhhhc-cCCcCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeccC
Confidence            34455566665  11 1158999999999999    9999999999999999999863

This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=87.86  E-value=0.35  Score=47.54  Aligned_cols=40  Identities=15%  Similarity=0.187  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCC--------CeEEEeec-hhHhhhC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPY--------IKGINFDL-PHVIEHV  229 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a  229 (333)
                      ...+|+|.+||+|.++..++.+.+.        .+++++|+ +.+++.+
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a   79 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRA   79 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHH
Confidence            4569999999999999999887642        56788998 6666544

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]

Probab=87.74  E-value=0.62  Score=41.12  Aligned_cols=49  Identities=22%  Similarity=0.394  Sum_probs=44.0

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      .+..+.+.|.++|  |.++-+||.+++|+    +..-+.|.|+-|..+|++++..
T Consensus       196 ~e~~il~~i~~~G--Gri~Q~eL~r~lgl----sktTvsR~L~~LEk~GlIe~~K  244 (258)
T COG2512         196 DEKEILDLIRERG--GRITQAELRRALGL----SKTTVSRILRRLEKRGLIEKEK  244 (258)
T ss_pred             HHHHHHHHHHHhC--CEEeHHHHHHhhCC----ChHHHHHHHHHHHhCCceEEEE
Confidence            3566788888876  78999999999999    9999999999999999999974

>PRK11169 leucine-responsive transcriptional regulator; Provisional

Probab=87.70  E-value=0.64  Score=38.08  Aligned_cols=47  Identities=13%  Similarity=0.221  Sum_probs=43.0

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceee
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVEC   85 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~   85 (333)
                      ..+..|++.|.+.   |..|..+||+++|+    .+..+.+=++-|...|+++.
T Consensus        14 ~~D~~IL~~Lq~d---~R~s~~eiA~~lgl----S~~tv~~Ri~rL~~~GvI~~   60 (164)
T PRK11169         14 RIDRNILNELQKD---GRISNVELSKRVGL----SPTPCLERVRRLERQGFIQG   60 (164)
T ss_pred             HHHHHHHHHhccC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence            4688899999986   59999999999999    99999999999999999984

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=86.99  E-value=2.8  Score=42.84  Aligned_cols=55  Identities=22%  Similarity=0.167  Sum_probs=39.4

Q ss_pred             hHHHHHhhccCC-CCCCeEEEEcCCccHHHHHHHHHC------------------------------------------C
Q 035738          177 VMSNILESYKGF-DNIKQLVDVGGGIGVTLQAITTKY------------------------------------------P  213 (333)
Q Consensus       177 ~~~~~~~~~~~~-~~~~~vlDVGgG~G~~~~~l~~~~------------------------------------------p  213 (333)
                      .+..++.... + ++...++|-.||+|.++++.+...                                          .
T Consensus       177 lAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~  255 (702)
T PRK11783        177 LAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL  255 (702)
T ss_pred             HHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence            3444554333 6 557899999999999998876421                                          1


Q ss_pred             CCeEEEeec-hhHhhhCCCC
Q 035738          214 YIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       214 ~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ..+++++|+ +.+++.|+.+
T Consensus       256 ~~~i~G~Did~~av~~A~~N  275 (702)
T PRK11783        256 PSKFYGSDIDPRVIQAARKN  275 (702)
T ss_pred             CceEEEEECCHHHHHHHHHH
Confidence            236899999 8899888764

>COG3432 Predicted transcriptional regulator [Transcription]

Probab=86.93  E-value=0.25  Score=36.23  Aligned_cols=63  Identities=17%  Similarity=0.338  Sum_probs=46.8

Q ss_pred             hhhHhh-hcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccccccc
Q 035738           37 IFEIID-KAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVP  107 (333)
Q Consensus        37 lfd~L~-~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~  107 (333)
                      +||.|. ..+  |+....-|.-.+++    +....+..++.|+..|++... + ++....|.+|+.+..|+.
T Consensus        20 i~dIL~~~~~--~~~~~Tri~y~aNl----ny~~~~~yi~~L~~~Gli~~~-~-~~~~~~y~lT~KG~~fle   83 (95)
T COG3432          20 IFDILKAISE--GGIGITRIIYGANL----NYKRAQKYIEMLVEKGLIIKQ-D-NGRRKVYELTEKGKRFLE   83 (95)
T ss_pred             HHHHHHHhcC--CCCCceeeeeecCc----CHHHHHHHHHHHHhCCCEEec-c-CCccceEEEChhHHHHHH
Confidence            355555 222  58888899999999    999999999999999966664 1 112336999998876653

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=86.73  E-value=0.9  Score=43.58  Aligned_cols=77  Identities=16%  Similarity=0.179  Sum_probs=51.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CCe--EEEccCChhHHHHHHHHHHHhCCCCc
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PCM--WILHDWNDEHCLKLLKNCYKSIPEDG  261 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~gv--~vLh~~~~~~~~~lL~~~~~~L~pgG  261 (333)
                      .+....++||=||||.++.++++..  .+++++++ |+.++.|+.+   .|+  .-+|. .  ++.+++..+..-.-+++
T Consensus       381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~-g--qaE~~~~sl~~~~~~~~  455 (534)
T KOG2187|consen  381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIV-G--QAEDLFPSLLTPCCDSE  455 (534)
T ss_pred             CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeee-c--chhhccchhcccCCCCC
Confidence            6777999999999999999998876  45888888 8888888876   344  22221 1  22344544433332344


Q ss_pred             E-EEEEeee
Q 035738          262 K-VIAVELM  269 (333)
Q Consensus       262 ~-l~i~e~~  269 (333)
                      . +.|+|+-
T Consensus       456 ~~v~iiDPp  464 (534)
T KOG2187|consen  456 TLVAIIDPP  464 (534)
T ss_pred             ceEEEECCC
Confidence            4 7777763

>COG3413 Predicted DNA binding protein [General function prediction only]

Probab=86.62  E-value=0.68  Score=39.78  Aligned_cols=44  Identities=23%  Similarity=0.378  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHH
Q 035738           24 VLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLL   77 (333)
Q Consensus        24 ~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L   77 (333)
                      .+-.+|+.|.+.|-||. +.     ..++.|||+.+|+    .+..+...||-.
T Consensus       159 rQ~~vL~~A~~~GYFd~-PR-----~~~l~dLA~~lGI----Skst~~ehLRrA  202 (215)
T COG3413         159 RQLEVLRLAYKMGYFDY-PR-----RVSLKDLAKELGI----SKSTLSEHLRRA  202 (215)
T ss_pred             HHHHHHHHHHHcCCCCC-Cc-----cCCHHHHHHHhCC----CHHHHHHHHHHH
Confidence            45679999999999998 54     6899999999999    676666666543

>PHA01634 hypothetical protein

Probab=86.33  E-value=1.5  Score=34.13  Aligned_cols=39  Identities=8%  Similarity=0.050  Sum_probs=28.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHV  229 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a  229 (333)
                      ...+|+|||++.|..+..++-+... +++.++. |...+..
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK-~Vva~E~~~kl~k~~   67 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGAS-FVVQYEKEEKLRKKW   67 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCcc-EEEEeccCHHHHHHH
Confidence            4679999999999999998876543 4555655 4444433

>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity

Probab=86.32  E-value=2.2  Score=37.96  Aligned_cols=82  Identities=10%  Similarity=0.137  Sum_probs=48.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCe----EEEeechhHhhhCCCCCCeEEEccCChhHHHHHHHHHHHhCCCCcEE
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIK----GINFDLPHVIEHVPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDGKV  263 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~----~~~~D~~~~~~~a~~~~gv~vLh~~~~~~~~~lL~~~~~~L~pgG~l  263 (333)
                      .++...||=+|.+.|.+...|.+.||+.+    .+.+|-.......++.+.|.+...+-+++   .+++.++...+ ..|
T Consensus        56 ~~~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~l~~l~~v~l~~~fftee---~~~~~~~~~~~-~il  131 (294)
T PF01358_consen   56 LDGPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCISLEELSNVTLIQRFFTEE---YARRLRDKLNL-KIL  131 (294)
T ss_dssp             STT-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GGGTT-TTEEEEES---HH---HHHHHHHHHTT-EEE
T ss_pred             CCCceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhhhcccCcEEeehhhCCHH---HHHHHHhhcCC-CeE
Confidence            34568999999999999999999998855    89999855555556556676666554443   44555566666 778


Q ss_pred             EEEeeecCCC
Q 035738          264 IAVELMLPEV  273 (333)
Q Consensus       264 ~i~e~~~~~~  273 (333)
                      +|.|....++
T Consensus       132 lISDIRS~~~  141 (294)
T PF01358_consen  132 LISDIRSGDP  141 (294)
T ss_dssp             EEE-------
T ss_pred             EEEecccCCC
Confidence            8888755543

The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....

>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function

Probab=86.19  E-value=1.2  Score=32.68  Aligned_cols=47  Identities=23%  Similarity=0.240  Sum_probs=41.9

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..+.|...|...   ||-.+.-+|..+++    +...+...++-|..+|++++.
T Consensus         8 l~~~IL~hl~~~---~~Dy~k~ia~~l~~----~~~~v~~~l~~Le~~GLler~   54 (92)
T PF10007_consen    8 LDLKILQHLKKA---GPDYAKSIARRLKI----PLEEVREALEKLEEMGLLERV   54 (92)
T ss_pred             hHHHHHHHHHHH---CCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence            356678888887   47899999999999    999999999999999999998

>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional

Probab=86.01  E-value=0.56  Score=45.65  Aligned_cols=68  Identities=16%  Similarity=0.239  Sum_probs=54.9

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccccCCC
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKD  110 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~~~~  110 (333)
                      .+..++..|...   ++.|..+||+.+|+    ++..+.+.++.|.+.|++.+...   ....|.+|+.+..++....
T Consensus         7 ~e~~vL~~L~~~---~~~s~~eLA~~l~l----~~~tVt~~i~~Le~kGlV~~~~~---~~~~i~LTeeG~~~~~~g~   74 (489)
T PRK04172          7 NEKKVLKALKEL---KEATLEELAEKLGL----PPEAVMRAAEWLEEKGLVKVEER---VEEVYVLTEEGKKYAEEGL   74 (489)
T ss_pred             HHHHHHHHHHhC---CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEEEee---eEEEEEECHHHHHHHHhcC
Confidence            455667777765   48999999999999    99999999999999999998621   2456899999987766543

>COG1522 Lrp Transcriptional regulators [Transcription]

Probab=85.90  E-value=1.1  Score=36.00  Aligned_cols=48  Identities=17%  Similarity=0.315  Sum_probs=43.0

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..+..|.+.|.+.   ++.+..+||+++|+    ++..+.+-++-|...|++...
T Consensus         8 ~~D~~IL~~L~~d---~r~~~~eia~~lgl----S~~~v~~Ri~~L~~~GiI~~~   55 (154)
T COG1522           8 DIDRRILRLLQED---ARISNAELAERVGL----SPSTVLRRIKRLEEEGVIKGY   55 (154)
T ss_pred             HHHHHHHHHHHHh---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCceeeE
Confidence            3566788899986   58999999999999    999999999999999999976

>PRK10870 transcriptional repressor MprA; Provisional

Probab=85.89  E-value=0.86  Score=37.84  Aligned_cols=47  Identities=13%  Similarity=0.128  Sum_probs=38.0

Q ss_pred             ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      .++..|...+ ++++|..|||+.+++    +...+.+++.-|...|+|.+.+
T Consensus        59 ~iL~~L~~~~-~~~it~~eLa~~l~l----~~~tvsr~v~rLe~kGlV~R~~  105 (176)
T PRK10870         59 MALITLESQE-NHSIQPSELSCALGS----SRTNATRIADELEKRGWIERRE  105 (176)
T ss_pred             HHHHHHhcCC-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC
Confidence            3445554321 247899999999999    9999999999999999999973

>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks

Probab=85.79  E-value=1.1  Score=31.41  Aligned_cols=49  Identities=16%  Similarity=0.192  Sum_probs=41.7

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .+..+++.++.+.. .+.+..+|+..+|.    +++.+-..++.|...|++.+.
T Consensus         3 ~~~~~Le~I~rsR~-~Gi~q~~L~~~~~~----D~r~i~~~~k~L~~~gLI~k~   51 (75)
T PF04182_consen    3 IQYCLLERIARSRY-NGITQSDLSKLLGI----DPRSIFYRLKKLEKKGLIVKQ   51 (75)
T ss_pred             hHHHHHHHHHhcCC-CCEehhHHHHHhCC----CchHHHHHHHHHHHCCCEEEE
Confidence            45567777886544 37888999999999    999999999999999999986

This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=85.75  E-value=0.89  Score=40.57  Aligned_cols=82  Identities=22%  Similarity=0.283  Sum_probs=57.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCe-EEEeec-hhHhhhCCCC-C---------Ce--------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIK-GINFDL-PHVIEHVPPH-P---------CM--------------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~-~---------gv--------------------  235 (333)
                      ..++.+++-||+|-|.+.+...++ +.+. +..+|+ ..+++..+++ |         .|                    
T Consensus       119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d  197 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD  197 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence            457899999999999999998887 6654 677788 5677766654 1         12                    


Q ss_pred             EEEccCChhH--H-----HHHHHHHHHhCCCCcEEEEEeeec
Q 035738          236 WILHDWNDEH--C-----LKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       236 ~vLh~~~~~~--~-----~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                      -++-+-+|+.  +     ....+-+.++||+||.+++.....
T Consensus       198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~  239 (337)
T KOG1562|consen  198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECM  239 (337)
T ss_pred             EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEeccee
Confidence            3333444332  2     245667889999999999887644

>PRK05638 threonine synthase; Validated

Probab=85.71  E-value=0.88  Score=43.71  Aligned_cols=63  Identities=16%  Similarity=0.241  Sum_probs=48.5

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhC--CCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccccc
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLT--TKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY  105 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g--~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l  105 (333)
                      ++.|+..|.+    ++.+..||++.++  +    .+..+.+.|+.|...|+++...+.| ....|++|+.+..+
T Consensus       373 r~~IL~~L~~----~~~~~~el~~~l~~~~----s~~~v~~hL~~Le~~GLV~~~~~~g-~~~~Y~Lt~~g~~~  437 (442)
T PRK05638        373 KLEILKILSE----REMYGYEIWKALGKPL----KYQAVYQHIKELEELGLIEEAYRKG-RRVYYKLTEKGRRL  437 (442)
T ss_pred             HHHHHHHHhh----CCccHHHHHHHHcccC----CcchHHHHHHHHHHCCCEEEeecCC-CcEEEEECcHHHHH
Confidence            5567777776    4899999999998  7    8889999999999999998642223 23458888776543

>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain

Probab=85.69  E-value=0.62  Score=44.76  Aligned_cols=71  Identities=14%  Similarity=0.174  Sum_probs=58.4

Q ss_pred             HHHHhChhhHhhhcCCCCC-CCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccccCC
Q 035738           31 AVYELGIFEIIDKAGPGAK-LSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNK  109 (333)
Q Consensus        31 ~a~~lglfd~L~~~~~~g~-~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~~~  109 (333)
                      ++.+..|+..|...   ++ .+.++||+.+|+    ++..+.+.+..|.+.|+++....   ....|.+|+.+..++.++
T Consensus         2 ~~~e~~iL~~l~~~---~~~~~~~~la~~~g~----~~~~v~~~~~~L~~kg~v~~~~~---~~~~~~LT~eG~~~l~~G   71 (492)
T PLN02853          2 AMAEEALLGALSNN---EEISDSGQFAASHGL----DHNEVVGVIKSLHGFRYVDAQDI---KRETWVLTEEGKKYAAEG   71 (492)
T ss_pred             chHHHHHHHHHHhc---CCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEE---EEEEEEECHHHHHHHHcC
Confidence            34577788888875   34 799999999999    99999999999999999987642   467899999998777765


Q ss_pred             CC
Q 035738          110 DG  111 (333)
Q Consensus       110 ~~  111 (333)
                      .+
T Consensus        72 ~P   73 (492)
T PLN02853         72 SP   73 (492)
T ss_pred             CH
Confidence            43

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=85.64  E-value=0.63  Score=38.07  Aligned_cols=39  Identities=18%  Similarity=0.340  Sum_probs=32.2

Q ss_pred             CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ..|+|+-||.|..+..+++.+.  +++.+|+ |..++.++.+
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hN   40 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHN   40 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHH
T ss_pred             CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHH
Confidence            3699999999999999999975  4888999 7888888765

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=85.53  E-value=5.4  Score=37.41  Aligned_cols=42  Identities=17%  Similarity=0.105  Sum_probs=31.2

Q ss_pred             CCCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hhHhhhC
Q 035738          188 FDNIKQLVDVGGGI-GVTLQAITTKYPYIKGINFDL-PHVIEHV  229 (333)
Q Consensus       188 ~~~~~~vlDVGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a  229 (333)
                      .....+||.+|||. |..+..++++....+++++|. +...+.+
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~  225 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMA  225 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence            55678999999988 888889999886545777765 5554443

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=85.25  E-value=0.86  Score=38.11  Aligned_cols=42  Identities=10%  Similarity=0.056  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ...++||+=||||.++.+.+.+.-. +++.+|. +..+...+++
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA~-~v~fVE~~~~a~~~i~~N   84 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGAK-SVVFVEKNRKAIKIIKKN   84 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT-S-EEEEEES-HHHHHHHHHH
T ss_pred             CCCeEEEcCCccCccHHHHHhcCCC-eEEEEECCHHHHHHHHHH
Confidence            5689999999999999998887743 6888898 6777666543

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.80  E-value=3.1  Score=33.27  Aligned_cols=91  Identities=20%  Similarity=0.261  Sum_probs=57.1

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---C-----------Ce---------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---P-----------CM---------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~-----------gv---------  235 (333)
                      .+++.++ -++..+.+|+|.|.|......++.. -...+++++ |..+..++-.   .           ++         
T Consensus        63 nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~  140 (199)
T KOG4058|consen   63 NVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYR  140 (199)
T ss_pred             HHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccc
Confidence            4455554 4556899999999999888777655 345678888 7666544311   1           11         


Q ss_pred             EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738          236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPE  272 (333)
Q Consensus       236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~  272 (333)
                      ++.-.-.+.-...+-.|++.-|+.+.+++-+-+-.|+
T Consensus       141 ~vviFgaes~m~dLe~KL~~E~p~nt~vvacRFPLP~  177 (199)
T KOG4058|consen  141 NVVIFGAESVMPDLEDKLRTELPANTRVVACRFPLPT  177 (199)
T ss_pred             eEEEeehHHHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence            2222222233334566777778889999888875554

>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities

Probab=84.66  E-value=1.4  Score=29.74  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=31.1

Q ss_pred             CCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           48 AKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        48 g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..+ |..+||+.+|+    +..-+++-|+.|.+.|++...
T Consensus        22 ~~lps~~~la~~~~v----sr~tvr~al~~L~~~g~i~~~   57 (64)
T PF00392_consen   22 DRLPSERELAERYGV----SRTTVREALRRLEAEGLIERR   57 (64)
T ss_dssp             SBE--HHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred             CEeCCHHHHHHHhcc----CCcHHHHHHHHHHHCCcEEEE
Confidence            477 99999999999    999999999999999999987

The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....

>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A

Probab=84.46  E-value=1.2  Score=30.95  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=32.5

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +.|-++||..+|+    ....+.+.|+.|...|++...
T Consensus        28 ~lt~~~iA~~~g~----sr~tv~r~l~~l~~~g~I~~~   61 (76)
T PF13545_consen   28 PLTQEEIADMLGV----SRETVSRILKRLKDEGIIEVK   61 (76)
T ss_dssp             ESSHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEc
Confidence            7899999999999    999999999999999999975

...

>COG1733 Predicted transcriptional regulators [Transcription]

Probab=84.40  E-value=2.1  Score=33.06  Aligned_cols=79  Identities=16%  Similarity=0.223  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhC-CCCCCCcccHHHHHHHHhcccceeeecc-
Q 035738           11 QSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLT-TKNKDAPMMLDRILRLLASYSVVECSLD-   88 (333)
Q Consensus        11 ~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g-~~~~~~~~~l~~lL~~L~~~g~l~~~~~-   88 (333)
                      -+++...+++.+-|..-+++...+             |+.-..||-..++ +    .+..|.+-|+.|...|++.+..- 
T Consensus        11 c~~~~~l~~ig~kW~~lIl~~L~~-------------g~~RF~eL~r~i~~I----s~k~Ls~~Lk~Le~~Glv~R~~~~   73 (120)
T COG1733          11 CPVEEALEVIGGKWTLLILRDLFD-------------GPKRFNELRRSIGGI----SPKMLSRRLKELEEDGLVERVVYP   73 (120)
T ss_pred             CCHHHHHHHHcCccHHHHHHHHhc-------------CCCcHHHHHHHcccc----CHHHHHHHHHHHHHCCCEEeeecC
Confidence            356777888888888777665433             3788899999998 8    89999999999999999999741 


Q ss_pred             CCCccccccccccccccc
Q 035738           89 ASGARRLYSLNSVSKYYV  106 (333)
Q Consensus        89 ~~~~~~~y~~t~~~~~l~  106 (333)
                      .-+..-.|++|+.+..+.
T Consensus        74 ~~PprveY~LT~~G~~L~   91 (120)
T COG1733          74 EEPPRVEYRLTEKGRDLL   91 (120)
T ss_pred             CCCceeEEEEhhhHHHHH
Confidence            112244588887775544

>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress

Probab=84.22  E-value=1.7  Score=30.64  Aligned_cols=48  Identities=15%  Similarity=0.139  Sum_probs=38.5

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS  102 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~  102 (333)
                      .|+...+||+.++.    ++.-++--|..|.++|||+..+  + ..+.|..|..+
T Consensus        22 ~PVgSk~ia~~l~~----s~aTIRN~M~~Le~lGlve~~p--~-~s~GriPT~~a   69 (78)
T PF03444_consen   22 EPVGSKTIAEELGR----SPATIRNEMADLEELGLVESQP--H-PSGGRIPTDKA   69 (78)
T ss_pred             CCcCHHHHHHHHCC----ChHHHHHHHHHHHHCCCccCCC--C-CCCCCCcCHHH
Confidence            59999999999999    9999999999999999998531  1 23556665544

Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=84.04  E-value=4.2  Score=39.10  Aligned_cols=79  Identities=19%  Similarity=0.295  Sum_probs=48.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEe---echhHhhhCCCC--CCe---------------EEEcc------C
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINF---DLPHVIEHVPPH--PCM---------------WILHD------W  241 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~---D~~~~~~~a~~~--~gv---------------~vLh~------~  241 (333)
                      .+..+.|+|...|.|.++.+|.+. | +-+..+   +-+..+...-.+  -|+               .+||-      +
T Consensus       363 ~~~iRNVMDMnAg~GGFAAAL~~~-~-VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~  440 (506)
T PF03141_consen  363 WGRIRNVMDMNAGYGGFAAALIDD-P-VWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLY  440 (506)
T ss_pred             ccceeeeeeecccccHHHHHhccC-C-ceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhh
Confidence            567889999999999999999753 2 222111   112222211111  111               33332      2


Q ss_pred             Ch-hHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          242 ND-EHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       242 ~~-~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      .+ -+...||-++-|.|+|||.++|-|.
T Consensus       441 ~~rC~~~~illEmDRILRP~G~~iiRD~  468 (506)
T PF03141_consen  441 KDRCEMEDILLEMDRILRPGGWVIIRDT  468 (506)
T ss_pred             cccccHHHHHHHhHhhcCCCceEEEecc
Confidence            21 1235789999999999999999876

; GO: 0008168 methyltransferase activity

>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]

Probab=83.90  E-value=1.1  Score=38.09  Aligned_cols=44  Identities=25%  Similarity=0.428  Sum_probs=36.5

Q ss_pred             hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      |.+.|..  ++.+.|++|+|+++|+    +..-.+|.|.+|++.|++..+
T Consensus       163 i~~~~~~--~~~~~Taeela~~~gi----SRvTaRRYLeyl~~~~~l~a~  206 (224)
T COG4565         163 VREALKE--PDQELTAEELAQALGI----SRVTARRYLEYLVSNGILEAE  206 (224)
T ss_pred             HHHHHhC--cCCccCHHHHHHHhCc----cHHHHHHHHHHHHhcCeeeEE
Confidence            3444542  2359999999999999    899999999999999999865

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=83.85  E-value=4.6  Score=36.69  Aligned_cols=84  Identities=15%  Similarity=0.150  Sum_probs=59.6

Q ss_pred             CCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCCCe----EEEccCChhHH---------------
Q 035738          188 FDNIKQLVDVGGG-IGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHPCM----WILHDWNDEHC---------------  246 (333)
Q Consensus       188 ~~~~~~vlDVGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~gv----~vLh~~~~~~~---------------  246 (333)
                      +....+||-+|+| .|..+...++++.-.++++.|+ +.-++.|++. |.    ++-|.-+.++.               
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~-Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~  245 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF-GATVTDPSSHKSSPQELAELVEKALGKKQPDV  245 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh-CCeEEeeccccccHHHHHHHHHhhccccCCCe
Confidence            6678999999999 5777778889999999999999 8889998874 21    11111111111               


Q ss_pred             -------HHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738          247 -------LKLLKNCYKSIPEDGKVIAVELMLPE  272 (333)
Q Consensus       247 -------~~lL~~~~~~L~pgG~l~i~e~~~~~  272 (333)
                             ...++.+..++++||.+++.....+.
T Consensus       246 ~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~~  278 (354)
T KOG0024|consen  246 TFDCSGAEVTIRAAIKATRSGGTVVLVGMGAEE  278 (354)
T ss_pred             EEEccCchHHHHHHHHHhccCCEEEEeccCCCc
Confidence                   23455566699999998888875443

>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed

Probab=83.56  E-value=1.3  Score=42.09  Aligned_cols=43  Identities=19%  Similarity=0.162  Sum_probs=36.9

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN   99 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t   99 (333)
                      .|.|.++|++++++    +++.++++|+.|...|++.+.     +++.|.+.
T Consensus       309 ~~~t~~~La~~l~~----~~~~v~~iL~~L~~agLI~~~-----~~g~~~l~  351 (412)
T PRK04214        309 KALDVDEIRRLEPM----GYDELGELLCELARIGLLRRG-----ERGQWVLA  351 (412)
T ss_pred             CCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCeEec-----CCCceEec
Confidence            58999999999999    999999999999999999975     23456544

>PHA03108 poly(A) polymerase small subunit; Provisional

Probab=83.52  E-value=6.1  Score=35.00  Aligned_cols=79  Identities=13%  Similarity=0.125  Sum_probs=60.0

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCC----CeEEEeechhHhhhCCCCCCeEEEccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPY----IKGINFDLPHVIEHVPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAV  266 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~----~~~~~~D~~~~~~~a~~~~gv~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~  266 (333)
                      +..||=+|.+.|.+...|.+.|++    ++.+.+|-.......+..++|.+...+-+++   -+++.++.+.+.-.++|.
T Consensus        61 g~~VVYiGSApG~HI~~L~~lf~~lg~~ikw~LiDp~~h~~~Le~l~nV~Li~~f~de~---~i~~~r~~~~~~~illIS  137 (300)
T PHA03108         61 GSTIVYIGSAPGTHIRYLRDHFYSLGVVIKWMLIDGRKHDPILNGLRDVTLVTRFVDEA---YLRRLKKQLHPSKIILIS  137 (300)
T ss_pred             CceEEEecCCCCccHHHHHHHHHhcCCCeEEEEECCCcccHhhcCCCcEEeeHhhcCHH---HHHHHHHhccCCCEEEEE
Confidence            349999999999999999998887    6889999744444445456777777777775   455666777788888999


Q ss_pred             eeecCC
Q 035738          267 ELMLPE  272 (333)
Q Consensus       267 e~~~~~  272 (333)
                      |....+
T Consensus       138 DIRS~~  143 (300)
T PHA03108        138 DIRSKR  143 (300)
T ss_pred             eecccC
Confidence            886644

>PRK13509 transcriptional repressor UlaR; Provisional

Probab=83.37  E-value=1.5  Score=38.59  Aligned_cols=45  Identities=11%  Similarity=0.172  Sum_probs=40.5

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..|.+.|.+.   +..++.|||+.+|+    .+.-++|-|+.|.+.|++.+.
T Consensus         8 ~~Il~~l~~~---~~~~~~ela~~l~v----S~~TirRdL~~Le~~g~i~r~   52 (251)
T PRK13509          8 QILLELLAQL---GFVTVEKVIERLGI----SPATARRDINKLDESGKLKKV   52 (251)
T ss_pred             HHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence            3477888876   59999999999999    999999999999999999986

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=83.28  E-value=0.4  Score=36.21  Aligned_cols=75  Identities=15%  Similarity=0.204  Sum_probs=37.1

Q ss_pred             cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC-CCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHh--CCCCe
Q 035738          240 DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPE-VPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATG--AGFSG  316 (333)
Q Consensus       240 ~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~-~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~--aGf~~  316 (333)
                      +|.|+-...+++++++.|+|||.+++ |+-.-. -...   ........-.+     ..-...++++.++|.+  .||..
T Consensus        17 n~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w~sY~~~---~~~~~~~~~n~-----~~i~lrP~~F~~~L~~~evGF~~   87 (110)
T PF06859_consen   17 NWGDEGLKRFFRRIYSLLRPGGILIL-EPQPWKSYKKA---KRLSEEIRENY-----KSIKLRPDQFEDYLLEPEVGFSS   87 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHEEEEEEEEE-E---HHHHHTT---TTS-HHHHHHH-----HH----GGGHHHHHTSTTT---E
T ss_pred             cCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCcHHHHHH---hhhhHHHHhHH-----hceEEChHHHHHHHHhcccceEE
Confidence            56788889999999999999988654 552110 0000   00000111111     1112346678888887  69998


Q ss_pred             eEEeecC
Q 035738          317 ISCERAI  323 (333)
Q Consensus       317 ~~~~~~~  323 (333)
                      ++.....
T Consensus        88 ~e~~~~~   94 (110)
T PF06859_consen   88 VEELGVP   94 (110)
T ss_dssp             EEEE---
T ss_pred             EEEcccC
Confidence            8765543

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term

Probab=83.00  E-value=1.6  Score=33.54  Aligned_cols=36  Identities=8%  Similarity=0.107  Sum_probs=33.9

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      .+.|++|||+.+.+    .++.++.+|+.|...|+++..+
T Consensus        18 ~~vtl~elA~~l~c----S~Rn~r~lLkkm~~~gWi~W~p   53 (115)
T PF12793_consen   18 VEVTLDELAELLFC----SRRNARTLLKKMQEEGWITWQP   53 (115)
T ss_pred             cceeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeeeC
Confidence            47899999999999    9999999999999999999974

>COG1846 MarR Transcriptional regulators [Transcription]

Probab=82.75  E-value=1.5  Score=33.33  Aligned_cols=51  Identities=16%  Similarity=0.239  Sum_probs=41.5

Q ss_pred             HHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           30 QAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        30 ~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      ....+..++..|...+   +.+..+||+.+++    ++..+.++++-|...|++.+..
T Consensus        20 lt~~q~~~L~~l~~~~---~~~~~~la~~l~i----~~~~vt~~l~~Le~~glv~r~~   70 (126)
T COG1846          20 LTPPQYQVLLALYEAG---GITVKELAERLGL----DRSTVTRLLKRLEDKGLIERLR   70 (126)
T ss_pred             CCHHHHHHHHHHHHhC---CCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecC
Confidence            3455666777777753   4444999999999    9999999999999999999974

>TIGR00498 lexA SOS regulatory protein LexA

Probab=82.72  E-value=1.6  Score=36.97  Aligned_cols=47  Identities=19%  Similarity=0.287  Sum_probs=37.6

Q ss_pred             HhChhhHhhh----cCCCCCCCHHHHHHHhCCCCCCC-cccHHHHHHHHhcccceeee
Q 035738           34 ELGIFEIIDK----AGPGAKLSASDIAAQLTTKNKDA-PMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        34 ~lglfd~L~~----~~~~g~~t~~ela~~~g~~~~~~-~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +..|++.|.+    .+  -+.|..|||+.+|+    + +.-+.+.|+.|...|++.+.
T Consensus         8 q~~iL~~l~~~~~~~~--~~~~~~ela~~~~~----~s~~tv~~~l~~L~~~g~i~~~   59 (199)
T TIGR00498         8 QQEVLDLIRAHIESTG--YPPSIREIARAVGL----RSPSAAEEHLKALERKGYIERD   59 (199)
T ss_pred             HHHHHHHHHHHHHhcC--CCCcHHHHHHHhCC----CChHHHHHHHHHHHHCCCEecC
Confidence            4445555553    12  36889999999999    7 89999999999999999986

LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=82.65  E-value=0.88  Score=42.28  Aligned_cols=52  Identities=17%  Similarity=0.270  Sum_probs=38.7

Q ss_pred             hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      +...+++.++ ..+. +|||+=||.|.++..+++...  +++++|. +.+++.|+++
T Consensus       185 l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~N  237 (352)
T PF05958_consen  185 LYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDAREN  237 (352)
T ss_dssp             HHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHH
T ss_pred             HHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHH
Confidence            3445555554 4333 799999999999999998875  5888898 8888888764

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=82.43  E-value=1.1  Score=39.85  Aligned_cols=77  Identities=16%  Similarity=0.141  Sum_probs=43.4

Q ss_pred             CCCeEEEEcCCcc-HHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC----CCe---------------------E--EEc
Q 035738          190 NIKQLVDVGGGIG-VTLQAITTKY-PYIKGINFDL-PHVIEHVPPH----PCM---------------------W--ILH  239 (333)
Q Consensus       190 ~~~~vlDVGgG~G-~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~----~gv---------------------~--vLh  239 (333)
                      .+.+|+=||||.= ..+..+++.+ ++..++++|+ |.+++.+++.    .++                     .  ++-
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA  199 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA  199 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence            4679999999954 5666666654 6788999999 8888777542    111                     0  111


Q ss_pred             -cC--ChhHHHHHHHHHHHhCCCCcEEEEE
Q 035738          240 -DW--NDEHCLKLLKNCYKSIPEDGKVIAV  266 (333)
Q Consensus       240 -~~--~~~~~~~lL~~~~~~L~pgG~l~i~  266 (333)
                       -.  +.++-.++|.++.+.|+||+++++-
T Consensus       200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  200 ALVGMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             hhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence             11  2223358999999999999987776

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B

Probab=82.37  E-value=1.8  Score=26.61  Aligned_cols=37  Identities=16%  Similarity=0.310  Sum_probs=26.2

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHH
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRL   76 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~   76 (333)
                      ++..|.+.|...   +..+..+||+.+|+    ++..+.+=++.
T Consensus         4 ~D~~Il~~Lq~d---~r~s~~~la~~lgl----S~~~v~~Ri~r   40 (42)
T PF13404_consen    4 LDRKILRLLQED---GRRSYAELAEELGL----SESTVRRRIRR   40 (42)
T ss_dssp             HHHHHHHHHHH----TTS-HHHHHHHHTS-----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCccHHHHHHHHCc----CHHHHHHHHHH
Confidence            456788888876   59999999999999    77666554443

...

>COG1510 Predicted transcriptional regulators [Transcription]

Probab=82.31  E-value=1.7  Score=35.53  Aligned_cols=36  Identities=19%  Similarity=0.247  Sum_probs=33.6

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      .|+|++||+++||+    +...+..-|+-|...|++.+.-
T Consensus        40 ~Pmtl~Ei~E~lg~----Sks~vS~~lkkL~~~~lV~~~~   75 (177)
T COG1510          40 KPLTLDEIAEALGM----SKSNVSMGLKKLQDWNLVKKVF   75 (177)
T ss_pred             CCccHHHHHHHHCC----CcchHHHHHHHHHhcchHHhhh
Confidence            69999999999999    8889999999999999999863

>PF13730 HTH_36: Helix-turn-helix domain

Probab=82.29  E-value=1.3  Score=28.65  Aligned_cols=29  Identities=17%  Similarity=0.294  Sum_probs=27.6

Q ss_pred             CHHHHHHHhCCCCCCCcccHHHHHHHHhcccce
Q 035738           51 SASDIAAQLTTKNKDAPMMLDRILRLLASYSVV   83 (333)
Q Consensus        51 t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l   83 (333)
                      |.+.||+.+|+    ..+-+.+.++.|...|++
T Consensus        27 S~~~la~~~g~----s~~Tv~~~i~~L~~~G~I   55 (55)
T PF13730_consen   27 SQETLAKDLGV----SRRTVQRAIKELEEKGLI   55 (55)
T ss_pred             CHHHHHHHHCc----CHHHHHHHHHHHHHCcCC
Confidence            89999999999    999999999999999985

>PRK13777 transcriptional regulator Hpr; Provisional

Probab=81.86  E-value=1.9  Score=36.05  Aligned_cols=45  Identities=18%  Similarity=-0.040  Sum_probs=38.7

Q ss_pred             ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      .+...|...   +++|..+||+.+++    +..-+.++++-|...|++.+..
T Consensus        49 ~iL~~L~~~---~~itq~eLa~~l~l----~~sTvtr~l~rLE~kGlI~R~~   93 (185)
T PRK13777         49 HILWIAYHL---KGASISEIAKFGVM----HVSTAFNFSKKLEERGYLTFSK   93 (185)
T ss_pred             HHHHHHHhC---CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecC
Confidence            456666665   48999999999999    8888999999999999999863

>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A)

Probab=81.79  E-value=1.4  Score=32.89  Aligned_cols=51  Identities=14%  Similarity=0.213  Sum_probs=39.3

Q ss_pred             HHHhChhhHhhh-cCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           32 VYELGIFEIIDK-AGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        32 a~~lglfd~L~~-~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ...-.|++.|.. .....++++++|++++++    ++.-++..++.|...|++-..
T Consensus        47 ~~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~----~~~~v~~al~~L~~eG~IYsT   98 (102)
T PF08784_consen   47 PLQDKVLNFIKQQPNSEEGVHVDEIAQQLGM----SENEVRKALDFLSNEGHIYST   98 (102)
T ss_dssp             HHHHHHHHHHHC----TTTEEHHHHHHHSTS-----HHHHHHHHHHHHHTTSEEES
T ss_pred             HHHHHHHHHHHhcCCCCCcccHHHHHHHhCc----CHHHHHHHHHHHHhCCeEecc
Confidence            345566777766 222357999999999999    999999999999999999754

RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=81.72  E-value=7.6  Score=36.15  Aligned_cols=83  Identities=11%  Similarity=0.112  Sum_probs=57.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCC--CeEEEeec-hhHhhhCCCC------CC--------------------e---
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPY--IKGINFDL-PHVIEHVPPH------PC--------------------M---  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~------~g--------------------v---  235 (333)
                      ..++.+|||.-.+.|.=+..+++.-++  ..++.+|. +.-++..+++      .+                    .   
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i  233 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI  233 (355)
T ss_pred             CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence            667899999999999988888887765  55688898 5444433321      00                    0   


Q ss_pred             ----------------EEEccCChhHH-------HHHHHHHHHhCCCCcEEEEEeeec
Q 035738          236 ----------------WILHDWNDEHC-------LKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       236 ----------------~vLh~~~~~~~-------~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                                      .+...++..+.       .+||..+.+.|||||.|+-..-..
T Consensus       234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~  291 (355)
T COG0144         234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL  291 (355)
T ss_pred             EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence                            33344444432       468999999999999987766543

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=81.26  E-value=3.7  Score=39.29  Aligned_cols=133  Identities=10%  Similarity=0.086  Sum_probs=72.1

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCC---Ce-EEEccCChhHHHHHHHH
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHP---CM-WILHDWNDEHCLKLLKN  252 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~---gv-~vLh~~~~~~~~~lL~~  252 (333)
                      .....+.+. ..+..+++|.=||.|.++..++++.  .+++++++ +.+++.|+++.   ++ ++-..-.  .+.++..+
T Consensus       282 ~~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~--~ae~~~~~  356 (432)
T COG2265         282 YETALEWLE-LAGGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAANGIDNVEFIAG--DAEEFTPA  356 (432)
T ss_pred             HHHHHHHHh-hcCCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeC--CHHHHhhh
Confidence            344445444 5567899999999999999999555  46888999 88998887652   22 3222212  22245444


Q ss_pred             HHHhCCCCcEEEEEeeecCCCCCCccc-cccccch--hhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecC
Q 035738          253 CYKSIPEDGKVIAVELMLPEVPNTSIE-SKSNSDS--DVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAI  323 (333)
Q Consensus       253 ~~~~L~pgG~l~i~e~~~~~~~~~~~~-~~~~~~~--d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~  323 (333)
                      ....-+|+  .+|+|+-..  ...+.. .......  -+.+.+|  |  .-|...=.+.|.+.|+++.++.+.+
T Consensus       357 ~~~~~~~d--~VvvDPPR~--G~~~~~lk~l~~~~p~~IvYVSC--N--P~TlaRDl~~L~~~gy~i~~v~~~D  422 (432)
T COG2265         357 WWEGYKPD--VVVVDPPRA--GADREVLKQLAKLKPKRIVYVSC--N--PATLARDLAILASTGYEIERVQPFD  422 (432)
T ss_pred             ccccCCCC--EEEECCCCC--CCCHHHHHHHHhcCCCcEEEEeC--C--HHHHHHHHHHHHhCCeEEEEEEEec
Confidence            43222343  566676221  111000 0000000  0011111  1  1134444567788898888887765

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=81.24  E-value=2.8  Score=36.94  Aligned_cols=36  Identities=17%  Similarity=0.310  Sum_probs=26.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCC--------CCeEEEeec-hhH
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYP--------YIKGINFDL-PHV  225 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p--------~~~~~~~D~-~~~  225 (333)
                      .+.+|+|+|+|+|.++..+++...        .++++.++. |..
T Consensus        18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L   62 (252)
T PF02636_consen   18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYL   62 (252)
T ss_dssp             S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCC
T ss_pred             cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHH
Confidence            457999999999999999887533        357888887 444

; PDB: 4F3N_A 1ZKD_B.

>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional

Probab=80.88  E-value=1.4  Score=42.51  Aligned_cols=71  Identities=13%  Similarity=0.190  Sum_probs=57.6

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccccCCCC
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDG  111 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~~~~~  111 (333)
                      ..+..|+..|.+.+  +..+.++||+.+|+    ++..+.+.+..|.+.|+++....   ....|.+|+.+..++.++.+
T Consensus         6 ~~e~~iL~~l~~~~--~~~~~~~la~~~~~----~~~~v~~~~~~L~~kg~v~~~~~---~~~~~~LT~eG~~~~~~G~P   76 (494)
T PTZ00326          6 LEENTILSKLESEN--EIVNSLALAESLNI----DHQKVVGAIKSLESANYITTEMK---KSNTWTLTEEGEDYLKNGSP   76 (494)
T ss_pred             HHHHHHHHHHHhcC--CCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEE---EEEEEEECHHHHHHHHcCCH
Confidence            45566777887621  47899999999999    99999999999999999988642   46789999999987777543

>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4

Probab=80.83  E-value=1.5  Score=30.75  Aligned_cols=35  Identities=14%  Similarity=0.236  Sum_probs=23.5

Q ss_pred             hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHh
Q 035738           37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLA   78 (333)
Q Consensus        37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~   78 (333)
                      ++..|+++   .|.|+++||.++|.    +..-++..|..+-
T Consensus        29 LLr~LA~G---~PVt~~~LA~a~g~----~~e~v~~~L~~~p   63 (77)
T PF12324_consen   29 LLRLLAKG---QPVTVEQLAAALGW----PVEEVRAALAAMP   63 (77)
T ss_dssp             HHHHHTTT---S-B-HHHHHHHHT------HHHHHHHHHH-T
T ss_pred             HHHHHHcC---CCcCHHHHHHHHCC----CHHHHHHHHHhCC
Confidence            78889985   69999999999999    6666666555543

99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.

>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C

Probab=80.07  E-value=1.5  Score=27.78  Aligned_cols=41  Identities=15%  Similarity=0.191  Sum_probs=23.6

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSV   82 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~   82 (333)
                      .++.+...+.+     +.|..+||+.+|+    ++.-+.+|++.-...|+
T Consensus         6 ~R~~ii~l~~~-----G~s~~~ia~~lgv----s~~Tv~~w~kr~~~~G~   46 (50)
T PF13384_consen    6 RRAQIIRLLRE-----GWSIREIAKRLGV----SRSTVYRWIKRYREEGL   46 (50)
T ss_dssp             ----HHHHHHH-----T--HHHHHHHHTS-----HHHHHHHHT-------
T ss_pred             HHHHHHHHHHC-----CCCHHHHHHHHCc----CHHHHHHHHHHcccccc
Confidence            34556666666     6899999999999    99999999987666553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	333
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		9e-96
3reo_A	368	Monolignol O-Methyltransferase (Momt) Length = 368		5e-86
3p9c_A	364	Crystal Structure Of Perennial Ryegrass Lpomt1 Boun		8e-83
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		2e-64
1fpq_A	372	Crystal Structure Analysis Of Selenomethionine Subs		7e-56
1fp2_A	352	Crystal Structure Analysis Of Isoflavone O-Methyltr		4e-20
2qyo_A	357	Crystal Structure Of Isoflavone O-Methyltransferase		4e-19
1fpx_A	352	Crystal Structure Analysis Of Selenomethionine Subs		4e-18
1zgj_A	354	Crystal Structure Of Isoflavanone 4'-O-Methyltransf		2e-15
1zga_A	357	Crystal Structure Of Isoflavanone 4'-o-methyltransf		2e-15
1zg3_A	358	Crystal Structure Of The Isoflavanone 4'-O-Methyltr		2e-15
3gwz_A	369	Structure Of The Mitomycin 7-O-Methyltransferase Mm		2e-12
4a6d_A	353	Crystal Structure Of Human N-Acetylserotonin Methyl		3e-11
1qzz_A	374	Crystal Structure Of Aclacinomycin-10-Hydroxylase (		8e-11
3lst_A	348	Crystal Structure Of Calo1, Methyltransferase In Ca		2e-10
2ip2_A	334	Structure Of The Pyocyanin Biosynthetic Protein Phz		2e-07
1xds_A	374	Crystal Structure Of Aclacinomycin-10-Hydroxylase (		9e-06

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score =  346 bits (888), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 170/347 (48%), Positives = 227/347 (65%), Gaps = 23/347 (6%)
Query: 10  DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMM 69
           +++  +A QLA   VLPM +++  EL + EII KAGPGA++S  +IA+QL T N DAP+M
Sbjct: 17  EEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVM 76
Query: 70  LDRILRLLASYSVVECSLDAS---GARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVF 126
           LDR+LRLLA Y ++ CS+        +RLY L +V+KY V N+DGVS+     +  DKV 
Sbjct: 77  LDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVL 136
Query: 127 LECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYK 186
           +E W  LK A+L+GGIPFN+A+GM  FEY G DP FNK FN  M +++++ M  ILE+Y 
Sbjct: 137 MESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYT 196
Query: 187 GFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM----------- 235
           GF+ +K LVDVGGG G  +  I +KYP IKGINFDLPHVIE  P +P +           
Sbjct: 197 GFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSI 256
Query: 236 ---------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDS 286
                    WI HDW+DEHCLK LKNCY+++P++GKVI  E +LP  P++S+ +K     
Sbjct: 257 PKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHI 316
Query: 287 DVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
           DV+M+  +PGGKERT+ EF  LA GAGF G        N ++MEF K
Sbjct: 317 DVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLK 363

>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368

Iteration: 1
 Score =  314 bits (804), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 165/348 (47%), Positives = 211/348 (60%), Gaps = 24/348 (6%)
Query: 10  DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKA-GPGAKLSASDIAAQLTTKNKDAPM 68
           +++  +A QLA   VLPMA++A  EL + EI+ K+  P   +S ++IAAQL T N +AP+
Sbjct: 19  EEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPV 78
Query: 69  MLDRILRLLASYSVVECSLD---ASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKV 125
           MLDR+LRLLASYSVV  +L    +    RLY L  V K+   N+DGVSL P + +  DKV
Sbjct: 79  MLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKV 138
Query: 126 FLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESY 185
            LE W  LK AILEGGIPFN+A+GM+ F+Y G D   NK FN  M + +++ M  ILE Y
Sbjct: 139 LLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMY 198
Query: 186 KGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM---------- 235
            GF+ +  +VDVGGG G     I  KYP I  INFDLPHVI+  P    +          
Sbjct: 199 NGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDG 258
Query: 236 ----------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSD 285
                     WI HDW+DEHCLKLLKNCY ++P+ GKVI  E +LP  P+ SI +K    
Sbjct: 259 VPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIH 318
Query: 286 SDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
           +D LM+  +PGGKERT  EF  LA  +GF G        N +VMEF K
Sbjct: 319 TDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366

>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364

Iteration: 1
 Score =  303 bits (776), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 154/343 (44%), Positives = 208/343 (60%), Gaps = 25/343 (7%)
Query: 15  YANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL-TTKNKDAPMMLDRI 73
           +A QLA   VLPM ++   ELG+ EI+  AG G  L+ +++AA+L +  N +AP M+DRI
Sbjct: 23  FALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAANPEAPDMVDRI 81
Query: 74  LRLLASYSVVECSLDASGARRL---YSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECW 130
           LRLLASY+VV C ++     RL   Y    V K+  PN+DGVS+     +  DKV +E W
Sbjct: 82  LRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESW 141
Query: 131 SQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDN 190
             LK A+L+GGIPFN+A+GM  FEY G DP FN+ FN  M N++ ++   +LE Y GF+ 
Sbjct: 142 YYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEG 201
Query: 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM--------------- 235
           +  LVDVGGG+G T+ AI   YP IKG+NFDLPHVI   P  P +               
Sbjct: 202 LGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGD 261
Query: 236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLM 290
                WILHDW+D+HC  LLKNCY ++P  GKV+ V+ +LP  P  +  S+     D++M
Sbjct: 262 TILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIM 321
Query: 291 MIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
           +  +PGG+ER   EF  LA GAGF+G+       N W +EF K
Sbjct: 322 LAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score =  242 bits (617), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 145/354 (40%), Positives = 201/354 (56%), Gaps = 31/354 (8%)
Query: 9   RDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGP-GAKLSASDIAAQL--TTKNKD 65
            D +   A  L   +V P  + A  +L +FEII KA P GA +S S+IA++L  +T++ D
Sbjct: 21  EDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSD 80
Query: 66  APMMLDRILRLLASYSVVECS---LDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITH 122
            P  LDR+LRLLASYSV+  +   ++  GA R+Y L+ V KY VP++    L        
Sbjct: 81  LPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLC 140
Query: 123 DKVFLECWSQLKHAILEGGIP-FNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNI 181
               L+ W   K A+++  I  F   HG+  +E+ G D   N+ FN  M +  +  M  +
Sbjct: 141 YPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRM 200
Query: 182 LESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM------ 235
           LE Y GF+ I  LVDVGGG G  L+ I +KYP IKGINFDLP VIE+ PP   +      
Sbjct: 201 LEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGD 260
Query: 236 --------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESK 281
                          + H+W+DE C++ L NC+K++  +GKVI VE +LPE PNTS ESK
Sbjct: 261 MFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESK 320
Query: 282 SNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSG--ISCERAIGNLWVMEFYK 333
             S  D LM I + GG+ERT  ++  L+  +GFS   ++C RA  +L VMEFYK
Sbjct: 321 LVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFSKFQVAC-RAFNSLGVMEFYK 372

>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372

Iteration: 1
 Score =  214 bits (544), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 141/354 (39%), Positives = 194/354 (54%), Gaps = 31/354 (8%)
Query: 9   RDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGP-GAKLSASDIAAQL--TTKNKD 65
            D +   A  L   +V P  + A  +L +FEII KA P GA  S S+IA++L  +T++ D
Sbjct: 21  EDSACLSAXVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFXSPSEIASKLPASTQHSD 80
Query: 66  APMMLDRILRLLASYSVVECS---LDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITH 122
            P  LDR LRLLASYSV+  +   ++  GA R+Y L+ V KY VP++    L        
Sbjct: 81  LPNRLDRXLRLLASYSVLTSTTRTIEDGGAERVYGLSXVGKYLVPDESRGYLASFTTFLC 140
Query: 123 DKVFLECWSQLKHAILEGGIP-FNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNI 181
               L+ W   K A+++  I  F   HG+  +E+ G D   N+ FN    +  +      
Sbjct: 141 YPALLQVWXNFKEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNKSXVDVCATEXKRX 200
Query: 182 LESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM------ 235
           LE Y GF+ I  LVDVGGG G  L+ I +KYP IKGINFDLP VIE+ PP   +      
Sbjct: 201 LEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGD 260
Query: 236 --------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESK 281
                          + H+W+DE C++ L NC+K++  +GKVI VE +LPE PNTS ESK
Sbjct: 261 XFASVPQGDAXILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESK 320
Query: 282 SNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSG--ISCERAIGNLWVMEFYK 333
             S  D L  I + GG+ERT  ++  L+  +GFS   ++C RA  +L V EFYK
Sbjct: 321 LVSTLDNLXFI-TVGGRERTEKQYEKLSKLSGFSKFQVAC-RAFNSLGVXEFYK 372

>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 147/330 (44%), Gaps = 33/330 (10%)
Query: 27  MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86
           M+++   E+ I  II   G    +S S++ + L   +      + R++R LA     E  
Sbjct: 31  MSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQVPSSKIGN-VRRLMRYLAHNGFFEI- 86
Query: 87  LDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIP-FN 145
              +     Y+L   S+  V   D + L P ++   D      + +LK  I E  +  F 
Sbjct: 87  --ITKEEESYALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFG 143
Query: 146 RAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTL 205
              G   +++   +P +N  FN  M + + L+   + +    FD ++ +VDVGGG G T 
Sbjct: 144 VTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTA 203
Query: 206 QAITTKYPYIKGINFDLPHVIEH-----------------VPPHPCM---WILHDWNDEH 245
           + I   +P +K I FD P V+E+                 +P    +   +ILH+W D+ 
Sbjct: 204 KIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKD 263
Query: 246 CLKLLKNCYKSIPED---GKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTR 302
           CL++LK C +++  D   GKV  +++++ +  + +  ++     DV M   +  GKER  
Sbjct: 264 CLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLN--GKERNE 321
Query: 303 HEFMTLATGAGFSGISCERAIGNLWVMEFY 332
            E+  L   AGF         G L ++E Y
Sbjct: 322 EEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351

>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 150/350 (42%), Gaps = 34/350 (9%)
Query: 9   RDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPM 68
           + Q+  Y N  A   V  M+++   E+ I  II   G    LS      Q+ +   D   
Sbjct: 15  KAQALLYKNMYA--FVDSMSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIPSTKVDN-- 70
Query: 69  MLDRILRLLASYSVVE--CSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVF 126
            + R++R LA     E   + +       Y+L   S+  V   + + L P ++   D   
Sbjct: 71  -VQRLMRYLAHNGFFEIITNQELENEEEAYALTVASELLVKGTE-LCLAPMVECVLDPTL 128
Query: 127 LECWSQLKHAILEGGIP-FNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESY 185
              +  LK  + E  +  F    G   +E+   +P +N  +N  + + + ++   + +  
Sbjct: 129 STSFHNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMINLAMKDCN 188
Query: 186 KGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEH----------------- 228
             F+ ++ +VDVGGG G T + I   +P +  + FD P V+E+                 
Sbjct: 189 LVFEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGSNNLTYVGGDMFIS 248
Query: 229 VPPHPCMW---ILHDWNDEHCLKLLKNCYKSIPED---GKVIAVELMLPEVPNTSIESKS 282
           VP    +    +LHDW D+ C+K+LK C +++  D   GKVI +++++ E  + +  ++ 
Sbjct: 249 VPKADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDENQLTQI 308
Query: 283 NSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFY 332
               +V   I    GKER   E+  L   AGF         G + ++E Y
Sbjct: 309 KLLMNV--TISCVNGKERNEEEWKKLFIEAGFQDYKISPFTGLMSLIEIY 356

>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 122/288 (42%), Gaps = 36/288 (12%)
Query: 72  RILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWS 131
           R+ R LA     E     +     Y+L   S+  V   D + L P ++   D      + 
Sbjct: 73  RLXRYLAHNGFFEI---ITKEEESYALTVASELLVRGSD-LCLAPXVECVLDPTLSGSYH 128
Query: 132 QLKHAILEGGIP-FNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDN 190
           +LK  I E  +  F    G   +++   +P +N  FN    + + L+   + +    FD 
Sbjct: 129 ELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLINLALRDCDFVFDG 188
Query: 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEH-----------------VPPHP 233
           ++ +VDVGGG G T + I   +P +K I FD P V+E+                 +P   
Sbjct: 189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDXFTSIPNAD 248
Query: 234 CM---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLM 290
            +   +ILH+W D+ CL++LK C +++  DGK   V ++     +  I+ K + +    +
Sbjct: 249 AVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTII-----DXVIDKKKDENQVTQI 303
Query: 291 MIQSP------GGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFY 332
            +          GKER   E+  L   AGF         G L ++E Y
Sbjct: 304 KLLXDVNXACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351

>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 151/343 (44%), Gaps = 37/343 (10%)
Query: 22  GIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLA--- 78
             V  MA+++  ELGI + I     G  ++ S++A+ L   +     +L R LRLL    
Sbjct: 16  NFVSSMALKSAMELGIADAIH--NHGKPMTLSELASSLKL-HPSKVNILHRFLRLLTHNG 72
Query: 79  --SYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHA 136
             + ++V+           YSL   SK  +  K    L   ++       L+ WS  K  
Sbjct: 73  FFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWSSSKKW 131
Query: 137 ILEGG--IPFNRAHGMHTFEYAGLDPGFN--KHFNTVMYNYTSLVMSNILESYKGFDNIK 192
             E      F  A G   +++   D   +    F   M + + +    + E+ + F+ ++
Sbjct: 132 FNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLE 191
Query: 193 QLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVI-----------------EHVPPHPCM 235
            LVDVGGG G   + I   +P++K   FD P V+                 + +P    +
Sbjct: 192 SLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAV 251
Query: 236 ---WILHDWNDEHCLKLLKNCYKSIP---EDGKVIAVELMLPEVPNTSIESKSNSDSDVL 289
              W+LHDWNDE  LK+LKN  ++I    +DGKVI +++ + E  +    ++   D D++
Sbjct: 252 LLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLV 311
Query: 290 MMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFY 332
           M+     GKERT+ E+  L   AGFS        G   ++E Y
Sbjct: 312 MLTMFL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 353

>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 149/345 (43%), Gaps = 41/345 (11%)
Query: 22  GIVLPMAMQAVYELGIFEIIDKAGPGAKLS--ASDIAAQLTTKNKDAPMMLDRILRLLA- 78
             V  MA+++  ELGI + I   G    LS  AS +    +  N     +L R LRLL  
Sbjct: 19  NFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVN-----ILHRFLRLLTH 73
Query: 79  ----SYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLK 134
               + ++V+           YSL   SK  +  K    L   ++       L+ WS  K
Sbjct: 74  NGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWSSSK 132
Query: 135 HAILEGG--IPFNRAHGMHTFEYAGLDPGFN--KHFNTVMYNYTSLVMSNILESYKGFDN 190
               E      F  A G   +++   D   +    F   M + + +    + E+ + F+ 
Sbjct: 133 KWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEG 192
Query: 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVI-----------------EHVPPHP 233
           ++ LVDVGGG G   + I   +P++K   FD P V+                 + +P   
Sbjct: 193 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSAD 252
Query: 234 CM---WILHDWNDEHCLKLLKNCYKSIP---EDGKVIAVELMLPEVPNTSIESKSNSDSD 287
            +   W+LHDWNDE  LK+LKN  ++I    +DGKVI +++ + E  +    ++   D D
Sbjct: 253 AVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYD 312
Query: 288 VLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFY 332
           ++M+     GKERT+ E+  L   AGFS        G   ++E Y
Sbjct: 313 LVMLTMFL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 356

>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 151/343 (44%), Gaps = 37/343 (10%)
Query: 22  GIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLA--- 78
             V  MA+++  ELGI + I     G  ++ S++A+ L   +     +L R LRLL    
Sbjct: 20  NFVSSMALKSAMELGIADAIH--NHGKPMTLSELASSLKL-HPSKVNILHRFLRLLTHNG 76
Query: 79  --SYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHA 136
             + ++V+           YSL   SK  +  K    L   ++       L+ WS  K  
Sbjct: 77  FFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWSSSKKW 135
Query: 137 ILEGG--IPFNRAHGMHTFEYAGLDPGFN--KHFNTVMYNYTSLVMSNILESYKGFDNIK 192
             E      F  A G   +++   D   +    F   M + + +    + E+ + F+ ++
Sbjct: 136 FNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLE 195
Query: 193 QLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVI-----------------EHVPPHPCM 235
            LVDVGGG G   + I   +P++K   FD P V+                 + +P    +
Sbjct: 196 SLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAV 255
Query: 236 ---WILHDWNDEHCLKLLKNCYKSIP---EDGKVIAVELMLPEVPNTSIESKSNSDSDVL 289
              W+LHDWNDE  LK+LKN  ++I    +DGKVI +++ + E  +    ++   D D++
Sbjct: 256 LLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLV 315
Query: 290 MMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFY 332
           M+     GKERT+ E+  L   AGFS        G   ++E Y
Sbjct: 316 MLTMFL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 357

>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 104/263 (39%), Gaps = 51/263 (19%)
Query: 95  LYSLNSVSKYYVPNKDGVSLGPGIQITHDKVF------LECWSQLKHAILEGGIPFNRAH 148
           L++ N++S   +P+       P   +  D  F         W QL H++  G   F+ A+
Sbjct: 109 LFAQNALSAVLLPD-------PASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVAN 161
Query: 149 GMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAI 208
           G   ++    DP   + FN    + +      +  +Y  F      VD+GGG G    A+
Sbjct: 162 GTSFWQLTHEDPKARELFNRAXGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLXAAV 220
Query: 209 TTKYPYIKGINFDLPHVIEH------------------------VPPHPCMW----ILHD 240
              +P ++G   + P V E                         +P    ++    +LHD
Sbjct: 221 LDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHD 280
Query: 241 WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKER 300
           W+D+  +++L+    +   D +++ ++ ++ E P  S            +++   GG ER
Sbjct: 281 WDDDDVVRILRRIATAXKPDSRLLVIDNLIDERPAASTLFVDL------LLLVLVGGAER 334
Query: 301 TRHEFMTLATGAGFSGISCERAI 323
           +  EF  L      SG+  ER++
Sbjct: 335 SESEFAALLEK---SGLRVERSL 354

>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 134/341 (39%), Gaps = 56/341 (16%)
Query: 10  DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMM 69
           DQ++   N  A G ++   + A  ELG+F+++ +A PG  L  + +AA +        ++
Sbjct: 6   DQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEA-PGP-LDVAAVAAGVRASAHGTELL 63
Query: 70  LDRI--LRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVF- 126
           LD    L+LL         ++  G +  Y    +S  Y+      ++ P  Q +  K   
Sbjct: 64  LDICVSLKLL--------KVETRGGKAFYRNTELSSDYL-----TTVSPTSQCSMLKYMG 110
Query: 127 ---LECWSQLKHAILEGGIPFNRAHGM---HTFEYAGLDPGFNKHFNTVMYNYTSLVMSN 180
                CW  L  A+ EG   +    G+     F       G    F   +    S+   +
Sbjct: 111 RTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRS 170
Query: 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVI----EHVP------ 230
           +L ++        + D+GGG G   +   + YP  K   FD+P V+    +H        
Sbjct: 171 VLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQ 229
Query: 231 -------------PHPCMWI----LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEV 273
                        P   ++I    LHDW D  C  LL+  Y +    G ++ +E +L E 
Sbjct: 230 IDFQEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDED 289
Query: 274 PNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGF 314
               + ++  S    L M+    G+ERT   +  L + AGF
Sbjct: 290 RRGPLLTQLYS----LNMLVQTEGQERTPTHYHMLLSSAGF 326

>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 135/341 (39%), Gaps = 64/341 (18%)
Query: 23  IVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSV 82
           +V PMA++    L + + +        L+ +D  A L  +    P  L R++R L    V
Sbjct: 27  LVTPMALRVAATLRLVDHL--------LAGADTLAGLADRTDTHPQALSRLVRHLTVVGV 78
Query: 83  VECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHA------ 136
           +E                  +   P + G+ L  G      + +L+    + HA      
Sbjct: 79  LEGG------------EKQGRPLRPTRLGMLLADG-HPAQQRAWLDLNGAVSHADLAFTG 125
Query: 137 ---ILEGGIP-FNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIK 192
              ++  G P +   +G   +E    D      F+ +M     L      ++Y  +  ++
Sbjct: 126 LLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVR 184
Query: 193 QLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHV---------------------PP 231
            ++DVGGG G  L AI  + P+++G   +L    E                        P
Sbjct: 185 HVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKP 244
Query: 232 HPCM-------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNS 284
            P         ++L +W+DE  L +L+ C +++   G+++ ++    +V     +   ++
Sbjct: 245 LPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA--DVEGDGADRFFST 302
Query: 285 DSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGN 325
             D L M+   GG+ RTR E + LA  AG + ++ ER  G+
Sbjct: 303 LLD-LRMLTFMGGRVRTRDEVVDLAGSAGLA-LASERTSGS 341

>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 33/170 (19%)
Query: 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGI-----------NFDLPHV---- 225
           IL     F     + DVGGG G  L  +  ++P ++G+             D P V    
Sbjct: 175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRW 234
Query: 226 ----------IEHVPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPN 275
                     + H   H    ILH+W DE  +++L NC +  P  G+V+ ++ ++PE  N
Sbjct: 235 KVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHGRVLVIDAVVPE-GN 293
Query: 276 TSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGN 325
            + +SK          + +  G+ERT  E   L T A   G+  +R +G 
Sbjct: 294 DAHQSKEXD----FXXLAARTGQERTAAELEPLFTAA---GLRLDRVVGT 336

>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 111/277 (40%), Gaps = 54/277 (19%)
Query: 72  RILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWS 131
           R++RLL ++ + +      G  R    N+ + + + + +G      + + + + F   W+
Sbjct: 60  RLMRLLVAFEIFQ------GDTRDGYANTPTSHLLRDVEGSF--RDMVLFYGEEFHAAWT 111
Query: 132 QLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNI--LESYKGFD 189
               A+L G   F  A G   + Y    P   + F   M   ++L    I  L  ++G  
Sbjct: 112 PACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLDFRG-- 168
Query: 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLP------------------------HV 225
             +  VDVGGG G   +AI    P  +G+  D                           +
Sbjct: 169 --RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDM 226
Query: 226 IEHVPPHPCMWILH----DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESK 281
           ++ VP +  +++L     D ++   L+LL NC +++  DG+V+ +E         +I + 
Sbjct: 227 LQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIE--------RTISAS 278
Query: 282 SNSDSDVLM---MIQSPGGKERTRHEFMTLATGAGFS 315
             S   VL    +  +  G+ RT  E + L    GF+
Sbjct: 279 EPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFA 315

>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adenosyl-L-Methionine (Sam) And 11-Deoxy- Beta-Rhodomycin (Dbra) Length = 374

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 67/331 (20%), Positives = 129/331 (38%), Gaps = 44/331 (13%)
Query: 23  IVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSV 82
           +V P A++    L + + +        L+ +D  A L  +    P  L R++R L    V
Sbjct: 27  LVTPXALRVAATLRLVDHL--------LAGADTLAGLADRTDTHPQALSRLVRHLTVVGV 78
Query: 83  VECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGI 142
           +E         R   L  +     P +    L     ++H  +    ++ L   +  G  
Sbjct: 79  LEGGEKQGRPLRPTRLGXLLADGHPAQQRAWLDLNGAVSHADL---AFTGLLDVVRTGRP 135
Query: 143 PFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIG 202
            +   +G   +E    D      F+ +      L      ++Y  +  ++ ++DVGGG G
Sbjct: 136 AYAGRYGRPFWEDLSADVALADSFDALXSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNG 194
Query: 203 VTLQAITTKYPYIKGINFDLPHVIEHV---------------------PPHPCM------ 235
             L AI  + P+++G   +L    E                        P P        
Sbjct: 195 GXLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLL 254
Query: 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQS 294
            ++L +W+DE  L +L+ C +++   G+++ ++    +V     +   ++  D L  +  
Sbjct: 255 SFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA--DVEGDGADRFFSTLLD-LRXLTF 311
Query: 295 PGGKERTRHEFMTLATGAGFSGISCERAIGN 325
            GG+ RTR E + LA  AG + ++ ER  G+
Sbjct: 312 XGGRVRTRDEVVDLAGSAGLA-LASERTSGS 341

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	333
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	1e-130
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	1e-125
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	1e-122
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	1e-110
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	1e-108
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	1e-107
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	1e-106
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	1e-104
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	1e-101
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	3e-99
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	2e-97
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	1e-84
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	9e-82
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	6e-77
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	2e-74

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score =  374 bits (961), Expect = e-130
 Identities = 165/352 (46%), Positives = 211/352 (59%), Gaps = 24/352 (6%)

Query: 6   DGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAG-PGAKLSASDIAAQLTTKNK 64
               +++  +A QLA   VLPMA++A  EL + EI+ K+  P   +S ++IAAQL T N 
Sbjct: 15  HSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNP 74

Query: 65  DAPMMLDRILRLLASYSVVECSL---DASGARRLYSLNSVSKYYVPNKDGVSLGPGIQIT 121
           +AP+MLDR+LRLLASYSVV  +L    +    RLY L  V K+   N+DGVSL P + + 
Sbjct: 75  EAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLA 134

Query: 122 HDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNI 181
            DKV LE W  LK AILEGGIPFN+A+GM+ F+Y G D   NK FN  M + +++ M  I
Sbjct: 135 TDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKI 194

Query: 182 LESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM------ 235
           LE Y GF+ +  +VDVGGG G     I  KYP I  INFDLPHVI+  P    +      
Sbjct: 195 LEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGD 254

Query: 236 --------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESK 281
                         WI HDW+DEHCLKLLKNCY ++P+ GKVI  E +LP  P+ SI +K
Sbjct: 255 MFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATK 314

Query: 282 SNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
               +D LM+  +PGGKERT  EF  LA  +GF G        N +VMEF K
Sbjct: 315 VVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score =  362 bits (932), Expect = e-125
 Identities = 152/350 (43%), Positives = 208/350 (59%), Gaps = 25/350 (7%)

Query: 8   ERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL-TTKNKDA 66
             + +  +A QLA   VLPM ++   ELG+ EI+  AG  + L+ +++AA+L +  N +A
Sbjct: 16  ADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKS-LTPTEVAAKLPSAANPEA 74

Query: 67  PMMLDRILRLLASYSVVECSL---DASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHD 123
           P M+DRILRLLASY+VV C +         R Y    V K+  PN+DGVS+     +  D
Sbjct: 75  PDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQD 134

Query: 124 KVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILE 183
           KV +E W  LK A+L+GGIPFN+A+GM  FEY G DP FN+ FN  M N++ ++   +LE
Sbjct: 135 KVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLE 194

Query: 184 SYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM-------- 235
            Y GF+ +  LVDVGGG+G T+ AI   YP IKG+NFDLPHVI   P  P +        
Sbjct: 195 LYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMF 254

Query: 236 ------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSN 283
                       WILHDW+D+HC  LLKNCY ++P  GKV+ V+ +LP  P  +  S+  
Sbjct: 255 KEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGV 314

Query: 284 SDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
              D++M+  +PGG+ER   EF  LA GAGF+G+       N W +EF K
Sbjct: 315 FHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score =  354 bits (911), Expect = e-122
 Identities = 145/362 (40%), Positives = 201/362 (55%), Gaps = 31/362 (8%)

Query: 1   MDSIVDGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAG-PGAKLSASDIAAQL 59
           + +  +   D +   A  L   +V P  + A  +L +FEII KA  PGA +S S+IA++L
Sbjct: 13  ISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKL 72

Query: 60  --TTKNKDAPMMLDRILRLLASYSVVECSLDAS---GARRLYSLNSVSKYYVPNKDGVSL 114
             +T++ D P  LDR+LRLLASYSV+  +       GA R+Y L+ V KY VP++    L
Sbjct: 73  PASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYL 132

Query: 115 GPGIQITHDKVFLECWSQLKHAILEGGI-PFNRAHGMHTFEYAGLDPGFNKHFNTVMYNY 173
                       L+ W   K A+++  I  F   HG+  +E+ G D   N+ FN  M + 
Sbjct: 133 ASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDV 192

Query: 174 TSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHP 233
            +  M  +LE Y GF+ I  LVDVGGG G  L+ I +KYP IKGINFDLP VIE+ PP  
Sbjct: 193 CATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLS 252

Query: 234 CM--------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEV 273
            +                     + H+W+DE C++ L NC+K++  +GKVI VE +LPE 
Sbjct: 253 GIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEE 312

Query: 274 PNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSG--ISCERAIGNLWVMEF 331
           PNTS ESK  S  D LM I   GG+ERT  ++  L+  +GFS   ++C RA  +L VMEF
Sbjct: 313 PNTSEESKLVSTLDNLMFIT-VGGRERTEKQYEKLSKLSGFSKFQVAC-RAFNSLGVMEF 370

Query: 332 YK 333
           YK
Sbjct: 371 YK 372

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score =  324 bits (833), Expect = e-110
 Identities = 87/360 (24%), Positives = 153/360 (42%), Gaps = 37/360 (10%)

Query: 1   MDSIVDGERD----QSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIA 56
           M S ++G +     ++ A   +     +  M+++   E+ I  II   G     S S++ 
Sbjct: 1   MASSINGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPI--SLSNLV 58

Query: 57  AQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGP 116
           + L   +      + R++R LA     E     +     Y+L   S+  V   D   L P
Sbjct: 59  SILQVPSSKIGN-VRRLMRYLAHNGFFEII---TKEEESYALTVASELLVRGSDL-CLAP 113

Query: 117 GIQITHDKVFLECWSQLKHAILEGGI-PFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTS 175
            ++   D      + +LK  I E  +  F    G   +++   +P +N  FN  M + + 
Sbjct: 114 MVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSK 173

Query: 176 LVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHP-- 233
           L+   + +    FD ++ +VDVGGG G T + I   +P +K I FD P V+E++      
Sbjct: 174 LINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNL 233

Query: 234 ------------------CMWILHDWNDEHCLKLLKNCYKSIPED---GKVIAVELMLPE 272
                               +ILH+W D+ CL++LK C +++  D   GKV  +++++ +
Sbjct: 234 TYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK 293

Query: 273 VPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFY 332
             + +  ++     DV M      GKER   E+  L   AGF         G L ++E Y
Sbjct: 294 KKDENQVTQIKLLMDVNMAC--LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score =  319 bits (819), Expect = e-108
 Identities = 91/359 (25%), Positives = 151/359 (42%), Gaps = 37/359 (10%)

Query: 6   DGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKD 65
           + E   +  +  +     V  MA+++  ELGI + I   G     + S++A+ L   +  
Sbjct: 4   ESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPM--TLSELASSLKL-HPS 60

Query: 66  APMMLDRILRLLASYSVVECSLDASG-----ARRLYSLNSVSKYYVPNKDGVSLGPGIQI 120
              +L R LRLL        ++             YSL   SK  +  K    L   ++ 
Sbjct: 61  KVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPT-CLSSIVKG 119

Query: 121 THDKVFLECWSQLKHAILEGG--IPFNRAHGMHTFEYAGLDPGFN--KHFNTVMYNYTSL 176
                 L+ WS  K    E      F  A G   +++   D   +    F   M + + +
Sbjct: 120 ALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRM 179

Query: 177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHP--- 233
               + E+ + F+ ++ LVDVGGG G   + I   +P++K   FD P V+ ++  +    
Sbjct: 180 FKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLN 239

Query: 234 -----------------CMWILHDWNDEHCLKLLKNCYKSIP---EDGKVIAVELMLPEV 273
                              W+LHDWNDE  LK+LKN  ++I    +DGKVI +++ + E 
Sbjct: 240 FVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDET 299

Query: 274 PNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFY 332
            +    ++   D D++M+     GKERT+ E+  L   AGFS        G   ++E Y
Sbjct: 300 SDDRGLTELQLDYDLVMLTMF-LGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 357

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score =  316 bits (811), Expect = e-107
 Identities = 74/355 (20%), Positives = 141/355 (39%), Gaps = 49/355 (13%)

Query: 8   ERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAP 67
            R  +    N + +G     A+    ELG+ E++ + GP    +A+ +A           
Sbjct: 34  ARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE-GP---RTATALAEATGAH----E 85

Query: 68  MMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFL 127
             L R+LRLLA+  V +      G   L++ N++S   +P+     +    +        
Sbjct: 86  QTLRRLLRLLATVGVFDDL----GHDDLFAQNALSAVLLPD-PASPVATDARFQAAPWHW 140

Query: 128 ECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKG 187
             W QL H++  G   F+ A+G   ++    DP   + FN  M + +      +  +Y  
Sbjct: 141 RAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD- 199

Query: 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM------------ 235
           F      VD+GGG G  + A+   +P ++G   + P V E                    
Sbjct: 200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPG 259

Query: 236 ----------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIE 279
                            +LHDW+D+  +++L+    ++  D +++ ++ ++ E P     
Sbjct: 260 DFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERP----- 314

Query: 280 SKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCER-AIGNLWVMEFYK 333
           + S    D+L+++   GG ER+  EF  L   +G           G + ++E  +
Sbjct: 315 AASTLFVDLLLLVL-VGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score =  313 bits (803), Expect = e-106
 Identities = 73/352 (20%), Positives = 128/352 (36%), Gaps = 46/352 (13%)

Query: 6   DGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKD 65
           D +R QS     + A G     A++A   +G+ + +   GP    + +++AA   T    
Sbjct: 16  DMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHL-VDGP---RTPAELAAATGTD--- 68

Query: 66  APMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKV 125
               L R+LRLLA   VV  S         ++L         +   V    GI +  D +
Sbjct: 69  -ADALRRVLRLLAVRDVVRES------DGRFALTDKGAALRSD-SPVPARAGILMFTDTM 120

Query: 126 FLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESY 185
           F     ++  A+      F    G     Y   D      +   M   ++     +  + 
Sbjct: 121 FWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAG 180

Query: 186 KGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPC----------- 234
             F     + DVGGG G  L  +  ++P ++G+  D   V+                   
Sbjct: 181 -DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEG 239

Query: 235 --------------MWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIES 280
                           ILH+W DE  +++L NC + +P  G+V+ ++ ++PE      ++
Sbjct: 240 DFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGN----DA 295

Query: 281 KSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFY 332
             + + D +M+     G+ERT  E   L T AG            + +    
Sbjct: 296 HQSKEMDFMMLAA-RTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGV 346

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score =  310 bits (795), Expect = e-104
 Identities = 69/370 (18%), Positives = 130/370 (35%), Gaps = 52/370 (14%)

Query: 1   MDSIVDGER----DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIA 56
           M S   GE     DQ      +    +V PMA++    L + + +  AG     + + +A
Sbjct: 1   MSSSSPGEPLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHL-LAGA---DTLAGLA 56

Query: 57  AQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGP 116
            +  T     P  L R++R L    V+E         R      +               
Sbjct: 57  DRTDT----HPQALSRLVRHLTVVGVLEGGEKQ---GRPLRPTRLGMLLADGHPAQQRAW 109

Query: 117 GIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSL 176
                        ++ L   +  G   +   +G   +E    D      F+ +M     L
Sbjct: 110 LDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDL 169

Query: 177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPC-- 234
                 ++Y  +  ++ ++DVGGG G  L AI  + P+++G   +L    E         
Sbjct: 170 AYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADA 228

Query: 235 --------------------------MWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL 268
                                      ++L +W+DE  L +L+ C +++   G+++ ++ 
Sbjct: 229 GLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288

Query: 269 MLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIG---- 324
              E      +   ++  D+ M+    GG+ RTR E + LA  AG +  S   +      
Sbjct: 289 ADVEGDGA--DRFFSTLLDLRMLTF-MGGRVRTRDEVVDLAGSAGLALASERTSGSTTLP 345

Query: 325 -NLWVMEFYK 333
            +  ++EF  
Sbjct: 346 FDFSILEFTA 355

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score =  299 bits (767), Expect = e-101
 Identities = 72/353 (20%), Positives = 130/353 (36%), Gaps = 53/353 (15%)

Query: 7   GERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDA 66
           G+R        +    +  PMA++    L + + I  AG     +A++IA+         
Sbjct: 2   GKRAAHIGL--RALADLATPMAVRVAATLRVADHI-AAGH---RTAAEIASAAGAH---- 51

Query: 67  PMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVF 126
              LDR+LR L +  +          + +Y L    +    +            +     
Sbjct: 52  ADSLDRLLRHLVAVGLFTRD-----GQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRG 106

Query: 127 LECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYK 186
              + +L H+I  G   +   +G   +E  G DP  +  F+T+M ++  L  + I   Y 
Sbjct: 107 DLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD 166

Query: 187 GFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM----------- 235
            +  +  +VDVGGG G  L A+ T +  + G   DL                        
Sbjct: 167 -WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVV 225

Query: 236 -----------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSI 278
                             +LHDW+D   + +L+ C ++    G V+ +E +         
Sbjct: 226 GSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAG------- 278

Query: 279 ESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEF 331
           +  + +  D+ M+    GGKER+  E   LA  AG +  +    I  + ++E 
Sbjct: 279 DEHAGTGMDLRMLTYF-GGKERSLAELGELAAQAGLAVRAAHP-ISYVSIVEM 329

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score =  296 bits (759), Expect = 3e-99
 Identities = 53/326 (16%), Positives = 115/326 (35%), Gaps = 46/326 (14%)

Query: 18  QLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLL 77
                +  PM ++    L + + I  AG     +   +AA+  T+    P  L R++R L
Sbjct: 25  IRLGSLHTPMVVRTAATLRLVDHIL-AGA---RTVKALAARTDTR----PEALLRLIRHL 76

Query: 78  ASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAI 137
            +  ++E           +    V +    +                     +++L  AI
Sbjct: 77  VAIGLLEEDAP-----GEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAI 131

Query: 138 LEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDV 197
             G   +   +G   +E     P     F++++     +       +Y  + N++ ++DV
Sbjct: 132 RTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAY-DWTNVRHVLDV 190

Query: 198 GGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM---------------------- 235
           GGG G    AI  + P++     ++   ++    +                         
Sbjct: 191 GGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKA 250

Query: 236 ------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVL 289
                 ++L +W D   +++L  C +++   G+++  E       + + +       D+ 
Sbjct: 251 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTE---LDLR 307

Query: 290 MMIQSPGGKERTRHEFMTLATGAGFS 315
           M++   GG  RTR ++  LA  AG  
Sbjct: 308 MLVF-LGGALRTREKWDGLAASAGLV 332

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score =  290 bits (745), Expect = 2e-97
 Identities = 65/344 (18%), Positives = 119/344 (34%), Gaps = 52/344 (15%)

Query: 18  QLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLL 77
           Q+  G      +     LG+ ++I+  G     S   +AA + +        + R++RLL
Sbjct: 14  QVVTGEWKSRCVYVATRLGLADLIES-GI---DSDETLAAAVGSD----AERIHRLMRLL 65

Query: 78  ASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAI 137
            ++ + +        R  Y+    S      +   S    +    ++ F   W+    A+
Sbjct: 66  VAFEIFQGD-----TRDGYANTPTSHLLRDVEG--SFRDMVLFYGEE-FHAAWTPACEAL 117

Query: 138 LEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDV 197
           L G   F  A G   + Y    P   + F   M   ++L    I      F   +  VDV
Sbjct: 118 LSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLL-DFRG-RSFVDV 174

Query: 198 GGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM---------------------- 235
           GGG G   +AI    P  +G+  D    +     +                         
Sbjct: 175 GGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNG 234

Query: 236 ------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVL 289
                  I+ D ++   L+LL NC +++  DG+V+ +E  +         S  +   DV 
Sbjct: 235 DIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASE----PSPMSVLWDVH 290

Query: 290 MMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
           + + +  G+ RT  E + L    GF+            ++   +
Sbjct: 291 LFM-ACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score =  258 bits (660), Expect = 1e-84
 Identities = 58/346 (16%), Positives = 117/346 (33%), Gaps = 52/346 (15%)

Query: 18  QLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLL 77
                     A++A  EL +F  I + G     S+  +A +  T        +  +   L
Sbjct: 12  NTVNAYQRSAAIKAAVELNVFTAISQ-GI---ESSQSLAQKCQTS----ERGMRMLCDYL 63

Query: 78  ASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAI 137
                +            Y L S S  ++  +    +G  I+     +    ++ L  A+
Sbjct: 64  VIIGFMTKQ------AEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAV 117

Query: 138 LEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDV 197
           L+GG   +    +       +   F K  + +M N   L+   + E+    + +K ++D+
Sbjct: 118 LKGGTAISSEGTL--SPEHPVWVQFAKAMSPMMANPAQLIAQLVNEN--KIEPLK-VLDI 172

Query: 198 GGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHP------------------------ 233
               G+   A+    P  +    D   V+E    +                         
Sbjct: 173 SASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGND 232

Query: 234 -----CMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDV 288
                    LH ++   C +LL+    ++  +GKVI  + +      T  ++ +     +
Sbjct: 233 YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAA---FSL 289

Query: 289 LMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLW-VMEFYK 333
           +M+  +P G   T  E+ ++ + AGFS             V+  YK
Sbjct: 290 VMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVAYK 335

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score =  251 bits (643), Expect = 9e-82
 Identities = 57/346 (16%), Positives = 120/346 (34%), Gaps = 53/346 (15%)

Query: 17  NQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRL 76
             + +G++    M+A  EL +F  + + GP      + +AA   +     P  L+ +L  
Sbjct: 36  ELVFKGLIEFSCMKAAIELDLFSHMAE-GP---KDLATLAADTGS----VPPRLEMLLET 87

Query: 77  LASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFL--ECWSQLK 134
           L    V+            +SL   + Y               +     FL  + +  L 
Sbjct: 88  LRQMRVINLE------DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMGLS 141

Query: 135 HAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQL 194
            A + G   F          Y  +    N +F  +  +     +  +LE  K  D +K++
Sbjct: 142 QA-VRGQKNFK-----GQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKM 194

Query: 195 VDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM------------------- 235
           +DVGGGIG    A+   +P +     +LP  I+ V  +                      
Sbjct: 195 IDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESY 254

Query: 236 ---------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDS 286
                     IL+  N++    + K  + ++   G+++ +++++ +  N + +  S+   
Sbjct: 255 PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYIL 314

Query: 287 DVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFY 332
              M         + +  +  +    G+  ++  R   +L V    
Sbjct: 315 GAGMPFS--VLGFKEQARYKEILESLGYKDVTMVRKYDHLLVQAVK 358

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score =  238 bits (610), Expect = 6e-77
 Identities = 47/364 (12%), Positives = 112/364 (30%), Gaps = 61/364 (16%)

Query: 2   DSIVDGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTT 61
           +S  D     S     +L+        +       +F++          + +++AA    
Sbjct: 14  ESTEDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQTG-----RTPAEVAASFGM 68

Query: 62  KNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY-VPNKDGVSLGPGIQI 120
                      +L  LA+  ++            +   ++++ Y         +GP ++ 
Sbjct: 69  ----VEGKAAILLHALAALGLLTKE------GDAFRNTALTERYLTTTSAD-YIGPIVE- 116

Query: 121 THDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSN 180
            H  +  + W +L   +        +            D      FN  M   +  ++  
Sbjct: 117 -HQYLQWDNWPRLGEILRSE-----KPLAFQQESRFAHDTRARDAFNDAMVRLSQPMVDV 170

Query: 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHP------- 233
           + E    F   + ++D+ GG G  L  +  ++P + G  +DLP   +             
Sbjct: 171 VSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGG 229

Query: 234 ------------------------CMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM 269
                                       LH ++     +++ +    +   G ++ + + 
Sbjct: 230 RVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMT 289

Query: 270 LPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVM 329
           + +   T   S    D  + MM+ +  G+         +   AG +    ER+IG   ++
Sbjct: 290 MNDDRVTPALSA---DFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVG--ERSIGRYTLL 344

Query: 330 EFYK 333
              +
Sbjct: 345 IGQR 348

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score =  233 bits (595), Expect = 2e-74
 Identities = 48/348 (13%), Positives = 101/348 (29%), Gaps = 49/348 (14%)

Query: 10  DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMM 69
            ++   A ++A G V+    + + + GIF+++     G   +  +I+ +           
Sbjct: 13  AEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREG--YTLQEISGRTGL----TRYA 66

Query: 70  LDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLEC 129
              +L    +   +            Y L     + + +     +       +  V  + 
Sbjct: 67  AQVLLEASLTIGTILLE------EDRYVLAKAGWFLLND----KMARVNMEFNHDVNYQG 116

Query: 130 WSQLKHAILEGGIPFNRAHGMHTFEYAGL--DPGFNKHFNTVMYNYTSLVMSNILESYKG 187
              L+ A+L G     +  G     Y GL   P   +       ++ S            
Sbjct: 117 LFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEIVF 176

Query: 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM------------ 235
             + K+L+D+GG  G            ++    DLP  +E +                  
Sbjct: 177 SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGA 236

Query: 236 -------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNT 276
                                L  +++E  + +L    +SI +D KV  +E +       
Sbjct: 237 NLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYE 296

Query: 277 SIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIG 324
           +        S     + +   K     + +     AG      +  IG
Sbjct: 297 TASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIG 344

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	333
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	100.0
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	100.0
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	100.0
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	100.0
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	100.0
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	100.0
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	100.0
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	100.0
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	100.0
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	100.0
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	100.0
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	100.0
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	100.0
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	100.0
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	100.0
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	100.0
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.71
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.65
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.54
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.52
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.52
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.51
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.51
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.5
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.49
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.48
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.47
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.47
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.45
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.43
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.43
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.43
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.42
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.42
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.41
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.41
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.41
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.4
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.4
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.4
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.39
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.39
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.38
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.38
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.37
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.37
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.36
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.36
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.35
3ocj_A	305	Putative exported protein; structural genomics, PS	99.35
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.35
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.35
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.34
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.34
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.33
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.33
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.32
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.31
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.3
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.3
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.3
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.29
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.29
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.29
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.28
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.28
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.26
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.26
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.25
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.25
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.23
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.23
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.21
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.2
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.19
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.19
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.19
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.17
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.17
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.16
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.16
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.15
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.15
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.15
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.13
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.12
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.11
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.08
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.07
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.06
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.06
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.05
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.04
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.04
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.02
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.02
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.02
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.01
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.0
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.99
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.99
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.98
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.96
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.95
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.94
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.94
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.93
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.93
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.92
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.91
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.91
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.9
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.89
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.88
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.87
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.87
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.86
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.86
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.86
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.86
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.86
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.86
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.85
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.85
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.82
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.81
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.8
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.8
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.79
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.78
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.78
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.77
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.75
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.75
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.75
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.74
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.74
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.73
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.71
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.7
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.7
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.7
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.7
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.7
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.7
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.68
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.66
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.64
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.63
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.63
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.62
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.62
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.62
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.59
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.57
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.57
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.56
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.55
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.54
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.54
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.53
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.52
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.52
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.51
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.51
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.5
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.48
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.47
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.45
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.44
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.43
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.42
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.4
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.4
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.4
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.39
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.39
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.39
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.39
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.39
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.38
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.37
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.35
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.35
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.35
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.35
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.34
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.34
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.33
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.32
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.32
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.32
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.31
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.31
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.3
2o07_A	304	Spermidine synthase; structural genomics, structur	98.3
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.29
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.28
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.27
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.26
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.26
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.25
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.22
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.22
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.22
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.21
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.21
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.21
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.2
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.2
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.19
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.13
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.13
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.12
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.12
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.12
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.11
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.1
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.1
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.08
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.06
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.03
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.03
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.01
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.98
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	97.98
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.97
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	97.96
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	97.92
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.87
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.84
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	97.83
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.82
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.81
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	97.79
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	97.78
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	97.78
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	97.76
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	97.76
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	97.74
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	97.73
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	97.71
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	97.67
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	97.66
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	97.63
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	97.63
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.62
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.61
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	97.6
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	97.59
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	97.57
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	97.54
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	97.54
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	97.49
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.47
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	97.47
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	97.41
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	97.39
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	97.39
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	97.37
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.34
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	97.34
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	97.33
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.32
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	97.32
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.31
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	97.29
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	97.28
1qbj_A	81	Protein (double-stranded RNA specific adenosine D	97.25
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	97.17
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.15
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.11
2heo_A	67	Z-DNA binding protein 1; protein DLM1-Z-DNA comple	97.09
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	97.08
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	97.08
1qgp_A	77	Protein (double stranded RNA adenosine deaminase);	96.96
3b73_A	111	PHIH1 repressor-like protein; winged-helix-turn-he	96.95
1xmk_A	79	Double-stranded RNA-specific adenosine deaminase;	96.92
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	96.91
1y0u_A	96	Arsenical resistance operon repressor, putative; s	96.89
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	96.7
2htj_A	81	P fimbrial regulatory protein KS71A; winged helix-	96.63
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	96.53
3pqk_A	102	Biofilm growth-associated repressor; helix-turn-he	96.52
3mq0_A	275	Transcriptional repressor of the blcabc operon; he	96.44
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	96.34
3ech_A	142	MEXR, multidrug resistance operon repressor; winge	96.32
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	96.31
2jt1_A	77	PEFI protein; solution structure, winged helix-tur	96.24
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	96.24
3jth_A	98	Transcription activator HLYU; transcription factor	96.23
3cuo_A	99	Uncharacterized HTH-type transcriptional regulato;	96.03
1xn7_A	78	Hypothetical protein YHGG; alpha+beta, GFT structu	95.99
2y75_A	129	HTH-type transcriptional regulator CYMR; DNA bindi	95.98
1oyi_A	82	Double-stranded RNA-binding protein; (alpha+beta)	95.97
1u2w_A	122	CADC repressor, cadmium efflux system accessory pr	95.94
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	95.93
3f6o_A	118	Probable transcriptional regulator, ARSR family pr	95.92
2hzt_A	107	Putative HTH-type transcriptional regulator YTCD;	95.89
2xrn_A	241	HTH-type transcriptional regulator TTGV; DNA-bindi	95.89
2oqg_A	114	Possible transcriptional regulator, ARSR family P;	95.88
2k02_A	87	Ferrous iron transport protein C; FEOC, iron-sulfu	95.87
3r4k_A	260	Transcriptional regulator, ICLR family; DNA/RNA-bi	95.86
1r7j_A	95	Conserved hypothetical protein SSO10A; winged heli	95.81
1mkm_A	249	ICLR transcriptional regulator; structural genomic	95.76
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	95.76
1ub9_A	100	Hypothetical protein PH1061; helix-turn-helix moti	95.74
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	95.69
3ll7_A	410	Putative methyltransferase; methytransferase, stru	95.68
2jsc_A	118	Transcriptional regulator RV1994C/MT2050; cadmium,	95.65
4a5n_A	131	Uncharacterized HTH-type transcriptional regulato;	95.63
1r1u_A	106	CZRA, repressor protein; zinc, DNA binding, transc	95.6
2kko_A	108	Possible transcriptional regulatory protein (possi	95.58
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	95.52
2g7u_A	257	Transcriptional regulator; ICLR family, structural	95.52
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	95.38
3lwf_A	159	LIN1550 protein, putative transcriptional regulato	95.34
2fu4_A	83	Ferric uptake regulation protein; DNA binding doma	95.33
1on2_A	142	Transcriptional regulator MNTR; helix-turn-helix,	95.3
2o0y_A	260	Transcriptional regulator; ICLR-family, structural	95.26
2ia2_A	265	Putative transcriptional regulator; SAD, PSI-2, st	95.26
3df8_A	111	Possible HXLR family transcriptional factor; APC89	95.24
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	95.23
1r1t_A	122	Transcriptional repressor SMTB; zinc, transcriptio	95.22
3t8r_A	143	Staphylococcus aureus CYMR; transcriptional regula	95.21
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	95.2
3f6v_A	151	Possible transcriptional regulator, ARSR family pr	95.2
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	95.14
3kp7_A	151	Transcriptional regulator TCAR; multiple drug resi	95.07
1z7u_A	112	Hypothetical protein EF0647; winged-helix-turn-hel	95.01
3k69_A	162	Putative transcription regulator; putative transcr	94.96
2f2e_A	146	PA1607; transcription factor, helix-TRUN-helix, AP	94.92
3g3z_A	145	NMB1585, transcriptional regulator, MARR family; t	94.87
3bdd_A	142	Regulatory protein MARR; putative multiple antibio	94.83
2wte_A	244	CSA3; antiviral protein, viral resistance, winged	94.77
3r0a_A	123	Putative transcriptional regulator; structural gen	94.72
2fsw_A	107	PG_0823 protein; alpha-beta structure, helix-turn-	94.7
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	94.54
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	94.53
1jgs_A	138	Multiple antibiotic resistance protein MARR; trans	94.52
3k0l_A	162	Repressor protein; helix-turn-helix, structural ge	94.48
3bja_A	139	Transcriptional regulator, MARR family, putative;	94.47
1tbx_A	99	ORF F-93, hypothetical 11.0 kDa protein; sulfolobu	94.44
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	94.37
3bro_A	141	Transcriptional regulator; helix_TURN_helix, multi	94.36
3nrv_A	148	Putative transcriptional regulator (MARR/EMRR FAM;	94.28
2x4h_A	139	Hypothetical protein SSO2273; transcription; 2.30A	94.18
1yyv_A	131	Putative transcriptional regulator; reductive meth	94.17
2hr3_A	147	Probable transcriptional regulator; MCSG, structur	94.12
3oop_A	143	LIN2960 protein; protein structure initiative, PSI	94.11
1sfx_A	109	Conserved hypothetical protein AF2008; structural	94.08
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	94.07
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.04
2zkz_A	99	Transcriptional repressor PAGR; protein-DNA, HTH m	94.01
2nnn_A	140	Probable transcriptional regulator; structural gen	94.01
1ylf_A	149	RRF2 family protein; structural genomics, transcri	93.89
2lnb_A	80	Z-DNA-binding protein 1; structural genomics, nort	93.78
3bpv_A	138	Transcriptional regulator; MARR, DNA binding, tran	93.76
2fbh_A	146	Transcriptional regulator PA3341; MARR, transcript	93.73
2gxg_A	146	146AA long hypothetical transcriptional regulator;	93.72
2bv6_A	142	MGRA, HTH-type transcriptional regulator MGRA; mul	93.72
2fa5_A	162	Transcriptional regulator MARR/EMRR family; multip	93.68
3hsr_A	140	HTH-type transcriptional regulator SARZ; helix-tur	93.61
2eth_A	154	Transcriptional regulator, putative, MAR family; M	93.6
2rdp_A	150	Putative transcriptional regulator MARR; PFAM PF01	93.6
3cdh_A	155	Transcriptional regulator, MARR family; helix-turn	93.57
2h09_A	155	Transcriptional regulator MNTR; transcription regu	93.57
3bj6_A	152	Transcriptional regulator, MARR family; helix-turn	93.53
2pg4_A	95	Uncharacterized protein; structural genomics, join	93.49
2nyx_A	168	Probable transcriptional regulatory protein, RV14;	93.48
2a61_A	145	Transcriptional regulator TM0710; APC4350, MCSG, m	93.46
3fm5_A	150	Transcriptional regulator; MCSG, PF04017, PSI, MAR	93.4
1xd7_A	145	YWNA; structural genomics, protein structure initi	93.38
1lj9_A	144	Transcriptional regulator SLYA; HTH DNA binding pr	93.32
2pex_A	153	Transcriptional regulator OHRR; transcription regu	93.3
3tgn_A	146	ADC operon repressor ADCR; helix-turn-helix, trans	93.3
2qww_A	154	Transcriptional regulator, MARR family; YP_013417.	93.26
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.26
3cjn_A	162	Transcriptional regulator, MARR family; silicibact	93.26
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	93.19
1z91_A	147	Organic hydroperoxide resistance transcriptional;	93.17
3boq_A	160	Transcriptional regulator, MARR family; MARR famil	93.1
3eco_A	139	MEPR; mutlidrug efflux pump regulator winged helix	93.09
4hbl_A	149	Transcriptional regulator, MARR family; HTH, trans	93.08
1s3j_A	155	YUSO protein; structural genomics, MARR transcript	93.07
3s2w_A	159	Transcriptional regulator, MARR family; structural	93.06
3e6m_A	161	MARR family transcriptional regulator; APC88769, s	92.98
2lkp_A	119	Transcriptional regulator, ARSR family; symmetric	92.96
2fbi_A	142	Probable transcriptional regulator; MARR, APC5816,	92.92
3jw4_A	148	Transcriptional regulator, MARR/EMRR family; DNA-b	92.9
3deu_A	166	Transcriptional regulator SLYA; MARR, WING-helix,	92.82
3mag_A	307	VP39; methylated adenine, methyltransferase, RNA C	92.78
2cfx_A	144	HTH-type transcriptional regulator LRPC; transcrip	92.74
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	92.73
3f3x_A	144	Transcriptional regulator, MARR family, putative;	92.67
2w25_A	150	Probable transcriptional regulatory protein; trans	92.67
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	92.65
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	92.62
2obp_A	96	Putative DNA-binding protein; structural genomics,	92.57
2p4w_A	202	Transcriptional regulatory protein ARSR family; ar	92.5
2qvo_A	95	Uncharacterized protein AF_1382; PSI, structural g	92.4
4aik_A	151	Transcriptional regulator SLYA; transcription, tra	92.4
2pn6_A	150	ST1022, 150AA long hypothetical transcriptional re	92.39
3u1d_A	151	Uncharacterized protein; GNTR-superfamily, structu	92.38
2frh_A	127	SARA, staphylococcal accessory regulator A; winged	92.37
2p5v_A	162	Transcriptional regulator, LRP/ASNC family; NMB057	92.33
1q1h_A	110	TFE, transcription factor E, TFE; TFIIE, transcrip	92.29
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	92.01
1bja_A	95	Transcription regulatory protein MOTA; activation	91.92
2esh_A	118	Conserved hypothetical protein TM0937; APC5794, st	91.85
2cg4_A	152	Regulatory protein ASNC; DNA binding, FFRP, LRP fa	91.83
1p6r_A	82	Penicillinase repressor; transcription regulation,	91.82
3hrs_A	214	Metalloregulator SCAR; DTXR/MNTR family member, tr	91.77
2k4b_A	99	Transcriptional regulator; DNA binding protein, wi	91.76
2dbb_A	151	Putative HTH-type transcriptional regulator PH006;	91.71
3nqo_A	189	MARR-family transcriptional regulator; structural	91.62
2cyy_A	151	Putative HTH-type transcriptional regulator PH151;	91.56
1ku9_A	152	Hypothetical protein MJ223; putative transcription	91.48
2d1h_A	109	ST1889, 109AA long hypothetical transcriptional re	91.46
2ia0_A	171	Putative HTH-type transcriptional regulator PF086;	91.44
2o03_A	131	Probable zinc uptake regulation protein FURB; DNA-	91.43
2fbk_A	181	Transcriptional regulator, MARR family; winged-hel	91.38
1uly_A	192	Hypothetical protein PH1932; helix-turn-helix, str	91.36
2e1c_A	171	Putative HTH-type transcriptional regulator PH151;	91.19
3khk_A	544	Type I restriction-modification system methylation	91.18
4fx0_A	148	Probable transcriptional repressor protein; helix-	91.15
2fe3_A	145	Peroxide operon regulator; oxidative stress regula	90.96
1i1g_A	141	Transcriptional regulator LRPA; helix-turn-helix,	90.95
1sfu_A	75	34L protein; protein/Z-DNA complex, DNA binding pr	90.89
3i4p_A	162	Transcriptional regulator, ASNC family; PSI, struc	90.85
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	90.82
2fxa_A	207	Protease production regulatory protein HPR; protea	90.73
3k2z_A	196	LEXA repressor; winged helix-turn-helix, SOS syste	90.55
3elk_A	117	Putative transcriptional regulator TA0346; structu	90.51
2xvc_A	59	ESCRT-III, SSO0910; cell cycle, cell division, cyt	90.51
2vn2_A	128	DNAD, chromosome replication initiation protein; D	90.49
4esf_A	117	PADR-like transcriptional regulator; PADR family,	90.48
3f8b_A	116	Transcriptional regulator, PADR-like family; winge	90.4
2qlz_A	232	Transcription factor PF0095; 2.50A {Pyrococcus fur	90.31
3u2r_A	168	Regulatory protein MARR; structural genomics, PSI-	90.13
3i71_A	68	Ethanolamine utilization protein EUTK; helix-turn-	90.11
1j5y_A	187	Transcriptional regulator, biotin repressor famil;	89.93
4g6q_A	182	Putative uncharacterized protein; structural genom	89.27
3lkd_A	542	Type I restriction-modification system methyltrans	89.13
4b8x_A	147	SCO5413, possible MARR-transcriptional regulator;	89.07
2dk5_A	91	DNA-directed RNA polymerase III 39 kDa polypeptide	88.67
3l7w_A	108	Putative uncharacterized protein SMU.1704; PADR, t	88.47
3mwm_A	139	ZUR, putative metal uptake regulation protein; FUR	88.41
2xig_A	150	Ferric uptake regulation protein; hpfur, transcrip	88.04
1v4r_A	102	Transcriptional repressor; helix-turn-helix, winge	87.97
1okr_A	123	MECI, methicillin resistance regulatory protein ME	87.92
3ufb_A	530	Type I restriction-modification system methyltran	87.53
1vpt_A	348	VP39; RNA CAP, poly(A) polymerase, methyltransfera	87.38
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	87.3
3hhh_A	116	Transcriptional regulator, PADR family; PF03551, s	86.71
3eyi_A	72	Z-DNA-binding protein 1; alternative splicing, DNA	86.54
2b0l_A	102	GTP-sensing transcriptional pleiotropic repressor;	86.36
1xma_A	145	Predicted transcriptional regulator; southea colla	86.31
2v79_A	135	DNA replication protein DNAD; primosome, DNA-bindi	85.81
3cta_A	230	Riboflavin kinase; structural genomics, transferas	85.67
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	85.51
1jhg_A	101	Trp operon repressor; complex (regulatory protein-	85.43
2g9w_A	138	Conserved hypothetical protein; DNA-binding domain	85.38
1sd4_A	126	Penicillinase repressor; BLAI, MECI, methicillin,	85.16
1mzb_A	136	Ferric uptake regulation protein; ferric uptake re	84.74
1fx7_A	230	Iron-dependent repressor IDER; DTXR, iron-dependen	83.97
2pjp_A	121	Selenocysteine-specific elongation factor; SELB, p	83.43
2hoe_A	380	N-acetylglucosamine kinase; TM1224, structural gen	83.41
1p4x_A	250	Staphylococcal accessory regulator A homologue; wi	83.35
3tqn_A	113	Transcriptional regulator, GNTR family; regulatory	83.13
2p8t_A	200	Hypothetical protein PH0730; pyrococcus horikoshii	83.1
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	83.04
1yg2_A	179	Gene activator APHA; virulence factor, winged heli	82.88
2ek5_A	129	Predicted transcriptional regulators; helix-turn-h	82.55
2o0m_A	345	Transcriptional regulator, SORC family; structural	82.33
1bia_A	321	BIRA bifunctional protein; transcription regulatio	82.25
2vxz_A	165	Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Py	82.16
1cf7_A	76	Protein (transcription factor E2F-4); E2F, winged-	80.77
4esb_A	115	Transcriptional regulator, PADR family; DNA bindin	80.24

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=100.00  E-value=6e-54  Score=396.73  Aligned_cols=312  Identities=22%  Similarity=0.382  Sum_probs=276.4

Q ss_pred             hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738            8 ERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus         8 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      ++.+++..|.+++.||+.+++|++|++|||||.|++.+  +|+|++|||+++|+    +++.++||||+|++.|++++..
T Consensus         4 ~e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~--~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~   77 (353)
T 4a6d_A            4 SEDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAP--GPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVET   77 (353)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSS--SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCC--CCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEec
Confidence            45689999999999999999999999999999999854  69999999999999    9999999999999999998763


Q ss_pred             cCCCccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcC---CChhhhhcCCchhHH
Q 035738           88 DASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHG---MHTFEYAGLDPGFNK  164 (333)
Q Consensus        88 ~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g---~~~~~~~~~~~~~~~  164 (333)
                      ++  ..+.|++|+.+..++.+.++.++.+++.+. .+..+..|.+|.++++++++++...+|   .++|+++.++|+...
T Consensus        78 ~~--~~~~y~~t~~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~  154 (353)
T 4a6d_A           78 RG--GKAFYRNTELSSDYLTTVSPTSQCSMLKYM-GRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERL  154 (353)
T ss_dssp             ET--TEEEEEECHHHHHHHSTTSTTCCHHHHHHH-HHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHH
T ss_pred             cC--ccceeeCCHHHHHHhhcCCchHHHHHHHHh-CHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHH
Confidence            22  256899999998777666667888888775 356788999999999999999988887   467999999999999


Q ss_pred             HHHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC------CCe---
Q 035738          165 HFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH------PCM---  235 (333)
Q Consensus       165 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------~gv---  235 (333)
                      .|+++|........+.+++.++ ++...+|||||||+|.++..+++++|+++++++|+|.+++.+++.      .+|   
T Consensus       155 ~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~  233 (353)
T 4a6d_A          155 QFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQ  233 (353)
T ss_dssp             HHHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeee
Confidence            9999999999888889999888 889999999999999999999999999999999999999876532      111   


Q ss_pred             ------------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCC
Q 035738          236 ------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGG  297 (333)
Q Consensus       236 ------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g  297 (333)
                                        +|||+|+|++|.++|++++++|+|||+|+|+|.+.+++...+   .....+|+.|+.++ +|
T Consensus       234 ~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~-~g  309 (353)
T 4a6d_A          234 EGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGP---LLTQLYSLNMLVQT-EG  309 (353)
T ss_dssp             ESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSS-SC
T ss_pred             cCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhC-CC
Confidence                              999999999999999999999999999999999988754432   23456799998875 99


Q ss_pred             CcCCHHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738          298 KERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       298 ~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  333 (333)
                      ++||.+||+++|++|||+.+++++.++.+++|+++|
T Consensus       310 ~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK  345 (353)
T 4a6d_A          310 QERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK  345 (353)
T ss_dssp             CCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred             cCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence            999999999999999999999999999999999987

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=100.00  E-value=1.8e-51  Score=381.59  Aligned_cols=325  Identities=46%  Similarity=0.872  Sum_probs=282.8

Q ss_pred             CchhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCC-CCCCCcc---cHHHHHHHHhcc
Q 035738            5 VDGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTT-KNKDAPM---MLDRILRLLASY   80 (333)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~-~~~~~~~---~l~~lL~~L~~~   80 (333)
                      ...+-++++..+++++.|++.+++|++|++||||+.|++.| ++|+|++|||+++|+ +   +++   .++||||+|++.
T Consensus        13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g-~~~~t~~eLA~~~g~~~---~~~~~~~l~rlLr~L~~~   88 (364)
T 3p9c_A           13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAA---NPEAPDMVDRILRLLASY   88 (364)
T ss_dssp             CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTT-TCCBCHHHHHHTTTCTT---CTTHHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcC-CCCCCHHHHHHhcCCCC---CccchhhHHHHHHHHHhC
Confidence            34567889999999999999999999999999999999853 259999999999995 3   455   999999999999


Q ss_pred             cceeeecc---CCCccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhc
Q 035738           81 SVVECSLD---ASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAG  157 (333)
Q Consensus        81 g~l~~~~~---~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~  157 (333)
                      |+|+++..   +|..++.|++|+.+..|+.+.++.++++++.+...+.+++.|.+|.+++++|.++|+..+|.++|+|+.
T Consensus        89 g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~  168 (364)
T 3p9c_A           89 NVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHG  168 (364)
T ss_dssp             TSEEEEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHT
T ss_pred             CCEEEeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHH
Confidence            99998631   111147899999999888776556899988876667789999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCCCCe--
Q 035738          158 LDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM--  235 (333)
Q Consensus       158 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~gv--  235 (333)
                      ++|+..+.|+++|...+......+++.++++++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+++  
T Consensus       169 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~  248 (364)
T 3p9c_A          169 TDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTH  248 (364)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEE
T ss_pred             hCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEE
Confidence            999999999999999988888888888876788899999999999999999999999999999999999988865322  


Q ss_pred             ------------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCC
Q 035738          236 ------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGG  297 (333)
Q Consensus       236 ------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g  297 (333)
                                        ++||+|+++++.++|++++++|+|||+|+|+|.+.++.............+|+.|+....+|
T Consensus       249 ~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g  328 (364)
T 3p9c_A          249 VGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGG  328 (364)
T ss_dssp             EECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred             EeCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCC
Confidence                              88999999999999999999999999999999998875433222223356788888544589


Q ss_pred             CcCCHHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738          298 KERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       298 ~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  333 (333)
                      ++||.++|.++|++|||+.+++++..+.+++||++|
T Consensus       329 ~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k  364 (364)
T 3p9c_A          329 RERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK  364 (364)
T ss_dssp             CCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             ccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence            999999999999999999999999999999999997

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=100.00  E-value=4.7e-51  Score=379.53  Aligned_cols=328  Identities=50%  Similarity=0.858  Sum_probs=282.2

Q ss_pred             chhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhc-CCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhccccee
Q 035738            6 DGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKA-GPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVE   84 (333)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~-~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~   84 (333)
                      +.+..+.+.++++++.|++.+++|++|++|||||.|++. ||++|.|++|||+++|..++.+++.++||||+|++.|+|+
T Consensus        15 ~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~   94 (368)
T 3reo_A           15 HSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVT   94 (368)
T ss_dssp             --CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeE
Confidence            335688999999999999999999999999999999986 6556899999999998322212349999999999999999


Q ss_pred             eecc---CCCccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCch
Q 035738           85 CSLD---ASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPG  161 (333)
Q Consensus        85 ~~~~---~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~  161 (333)
                      ++..   +|..+++|++|+.++.|+.+.++.++++++.+...+.+++.|.+|.+++++|.++|+..+|.++|+|+.++|+
T Consensus        95 ~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~~  174 (368)
T 3reo_A           95 YTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHR  174 (368)
T ss_dssp             EEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTCHH
T ss_pred             EecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhCHH
Confidence            8621   1111478999999998887766678999888776778899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCCCCe------
Q 035738          162 FNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM------  235 (333)
Q Consensus       162 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~gv------  235 (333)
                      ..+.|+++|...+......+++.++++++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+++      
T Consensus       175 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d  254 (368)
T 3reo_A          175 INKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGD  254 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECC
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecC
Confidence            99999999999988888888888866778899999999999999999999999999999999999988865332      


Q ss_pred             --------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCC
Q 035738          236 --------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERT  301 (333)
Q Consensus       236 --------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt  301 (333)
                                    ++||+|+++++.++|++++++|+|||+|+|+|.+.++.............+|+.|+..+.+|++||
T Consensus       255 ~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt  334 (368)
T 3reo_A          255 MFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERT  334 (368)
T ss_dssp             TTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCC
T ss_pred             CCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCC
Confidence                          889999999999999999999999999999999987654332222234567888886545899999


Q ss_pred             HHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738          302 RHEFMTLATGAGFSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       302 ~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  333 (333)
                      .++|+++|++|||+.+++.+..++.++||++|
T Consensus       335 ~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k  366 (368)
T 3reo_A          335 EKEFQALAMASGFRGFKVASCAFNTYVMEFLK  366 (368)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence            99999999999999999999999999999986

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=100.00  E-value=9e-47  Score=348.40  Aligned_cols=305  Identities=23%  Similarity=0.323  Sum_probs=269.1

Q ss_pred             hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738            8 ERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus         8 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      ..++....|++++.|++.+++|++|+++|||+.|++    ||.|++|||+++|+    +++.++||||+|++.|+|++. 
T Consensus        18 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~~-   88 (348)
T 3lst_A           18 DRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD----GPRTPAELAAATGT----DADALRRVLRLLAVRDVVRES-   88 (348)
T ss_dssp             CHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT----SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEec-
Confidence            456788899999999999999999999999999987    59999999999999    999999999999999999984 


Q ss_pred             cCCCccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHHHH
Q 035738           88 DASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFN  167 (333)
Q Consensus        88 ~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~  167 (333)
                           ++.|++|+.+..|..+.+ .++.+++.+...+.+++.|.+|.+++++|.++|+..+|.++|+|+.++|+....|.
T Consensus        89 -----~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~  162 (348)
T 3lst_A           89 -----DGRFALTDKGAALRSDSP-VPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYY  162 (348)
T ss_dssp             -----TTEEEECTTTGGGSTTSS-SCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHH
T ss_pred             -----CCEEecCHHHHHHhcCCC-ccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHH
Confidence                 689999999998865543 47888887765666789999999999999999999999889999999999999999


Q ss_pred             HHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC---------------
Q 035738          168 TVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH---------------  232 (333)
Q Consensus       168 ~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---------------  232 (333)
                      ++|........+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.++...+..               
T Consensus       163 ~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~  241 (348)
T 3lst_A          163 EGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDF  241 (348)
T ss_dssp             HHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCT
T ss_pred             HHHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCC
Confidence            9999999988889999887 888999999999999999999999999999999998777632211               


Q ss_pred             ----CC--e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCH
Q 035738          233 ----PC--M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTR  302 (333)
Q Consensus       233 ----~g--v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~  302 (333)
                          |+  +    ++||+|+++++.++|++++++|+|||+|+|.|.+.++....    .....+++.|+.. .+++.++.
T Consensus       242 ~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~-~~~~~~t~  316 (348)
T 3lst_A          242 LREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDA----HQSKEMDFMMLAA-RTGQERTA  316 (348)
T ss_dssp             TTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSC----CHHHHHHHHHHHT-TSCCCCBH
T ss_pred             CCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhhhcChhhhhc-CCCcCCCH
Confidence                11  1    88999999999999999999999999999999988765322    2235677888765 58999999


Q ss_pred             HHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738          303 HEFMTLATGAGFSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       303 ~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  333 (333)
                      ++|.++|+++||+++++++..+..++||++|
T Consensus       317 ~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p  347 (348)
T 3lst_A          317 AELEPLFTAAGLRLDRVVGTSSVMSIAVGVP  347 (348)
T ss_dssp             HHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred             HHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence            9999999999999999999878899999985

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=100.00  E-value=9.8e-47  Score=350.72  Aligned_cols=306  Identities=23%  Similarity=0.431  Sum_probs=270.5

Q ss_pred             hhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738            7 GERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus         7 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ........+|++++.|++.+++|++|+++||||.|++    ||.|++|||+++|+    +++.++||||+|++.|+++++
T Consensus        33 ~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~~  104 (369)
T 3gwz_A           33 AARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE----GPRTATALAEATGA----HEQTLRRLLRLLATVGVFDDL  104 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEEC
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEEe
Confidence            3456778899999999999999999999999999996    59999999999999    999999999999999999986


Q ss_pred             ccCCCcccc-ccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHH
Q 035738           87 LDASGARRL-YSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKH  165 (333)
Q Consensus        87 ~~~~~~~~~-y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~  165 (333)
                           +++. |.+|+.++.|..+.. .++.+++.+...+..+..|.+|.++++++.++|...+|.++|+|+.++|+..+.
T Consensus       105 -----~~~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~  178 (369)
T 3gwz_A          105 -----GHDDLFAQNALSAVLLPDPA-SPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKAREL  178 (369)
T ss_dssp             -----SSTTEEECCHHHHTTSCCTT-CHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHH
T ss_pred             -----CCCceEecCHHHHHHhcCCc-hhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHH
Confidence                 3678 999999998765543 478888877655567789999999999999999999998899999999999999


Q ss_pred             HHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-------------
Q 035738          166 FNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH-------------  232 (333)
Q Consensus       166 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------------  232 (333)
                      |.++|........+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.             
T Consensus       179 f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~  257 (369)
T 3gwz_A          179 FNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEIL  257 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred             HHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEe
Confidence            999999998888888988887 888899999999999999999999999999999998888776531             


Q ss_pred             --------C-C--e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCC
Q 035738          233 --------P-C--M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGG  297 (333)
Q Consensus       233 --------~-g--v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g  297 (333)
                              | +  +    ++||+|+++++.++|++++++|+|||+++|+|.+.++....    . ...+|+.|+.. .++
T Consensus       258 ~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~----~-~~~~d~~~~~~-~~g  331 (369)
T 3gwz_A          258 PGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAA----S-TLFVDLLLLVL-VGG  331 (369)
T ss_dssp             ECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCH----H-HHHHHHHHHHH-HSC
T ss_pred             ccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCC----c-hhHhhHHHHhh-cCC
Confidence                    1 1  1    88999999999999999999999999999999988765322    1 35678888766 489


Q ss_pred             CcCCHHHHHHHHHhCCCCeeEEee-cCCceeEEEEeC
Q 035738          298 KERTRHEFMTLATGAGFSGISCER-AIGNLWVMEFYK  333 (333)
Q Consensus       298 ~~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~vie~~~  333 (333)
                      ++||.++|.++|+++||+++++++ ..+..++||++|
T Consensus       332 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~  368 (369)
T 3gwz_A          332 AERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR  368 (369)
T ss_dssp             CCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred             ccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence            999999999999999999999999 678899999986

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=100.00  E-value=1.2e-45  Score=343.85  Aligned_cols=325  Identities=43%  Similarity=0.717  Sum_probs=257.1

Q ss_pred             hhhHHHHHHH--HHHhhhhHHHHHHHHHHhChhhHhhhcC-CCCCCCHHHHHHHhCC--CCCCCcccHHHHHHHHhcccc
Q 035738            8 ERDQSFAYAN--QLARGIVLPMAMQAVYELGIFEIIDKAG-PGAKLSASDIAAQLTT--KNKDAPMMLDRILRLLASYSV   82 (333)
Q Consensus         8 ~~~~~~~~l~--~~~~~~~~~~~l~~a~~lglfd~L~~~~-~~g~~t~~ela~~~g~--~~~~~~~~l~~lL~~L~~~g~   82 (333)
                      +.++....|+  +++.|++.+++|++|+++|||+.|++.| |+++.|++|||+++|+  ++|.+++.++||||+|++.|+
T Consensus        18 ~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gl   97 (372)
T 1fp1_D           18 EQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSV   97 (372)
T ss_dssp             -CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTS
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCc
Confidence            3456677788  9999999999999999999999999753 2223999999999998  233357899999999999999


Q ss_pred             eeeec---cCCCccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcC-CChhhhhcCCChhhhhcC
Q 035738           83 VECSL---DASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEG-GIPFNRAHGMHTFEYAGL  158 (333)
Q Consensus        83 l~~~~---~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g-~~~~~~~~g~~~~~~~~~  158 (333)
                      |+++.   ++|..++.|++|+.+..|..+.+..++++++.+...+.++..|.+|+++++++ .++|+..+|.++|+++.+
T Consensus        98 l~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~~  177 (372)
T 1fp1_D           98 LTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGK  177 (372)
T ss_dssp             EEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSS
T ss_pred             eEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHHh
Confidence            99861   01101368999999997776543247888888766667888999999999998 889998889889999999


Q ss_pred             CchhHHHHHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCCCCe---
Q 035738          159 DPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM---  235 (333)
Q Consensus       159 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~gv---  235 (333)
                      +|+....|+.+|...+......+++.++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+++   
T Consensus       178 ~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~  257 (372)
T 1fp1_D          178 DKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHV  257 (372)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEE
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEE
Confidence            99999999999999888878888888865778899999999999999999999999999999999999988864332   


Q ss_pred             -----------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCC
Q 035738          236 -----------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGK  298 (333)
Q Consensus       236 -----------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~  298 (333)
                                       ++||+|+++++.++|++++++|+|||+++|.|...++....+........+++.|+.. .+++
T Consensus       258 ~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~  336 (372)
T 1fp1_D          258 GGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFIT-VGGR  336 (372)
T ss_dssp             ECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHH-HSCC
T ss_pred             eCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhc-cCCc
Confidence                             8899999999999999999999999999999998876543211111245667777654 4789


Q ss_pred             cCCHHHHHHHHHhCCCCeeEEeecC-CceeEEEEeC
Q 035738          299 ERTRHEFMTLATGAGFSGISCERAI-GNLWVMEFYK  333 (333)
Q Consensus       299 ~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~  333 (333)
                      .|+.++|.++|+++||+++++++.. +..++||++|
T Consensus       337 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~  372 (372)
T 1fp1_D          337 ERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK  372 (372)
T ss_dssp             CEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred             cCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence            9999999999999999999999854 4269999987

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=100.00  E-value=1.6e-45  Score=341.40  Aligned_cols=320  Identities=29%  Similarity=0.441  Sum_probs=270.0

Q ss_pred             hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738            8 ERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus         8 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      +.+++...|++++.+++.+++|++|+++|||+.|++.|  ||.|++|||+++|+ ++.+++.++||||+|++.|+|++..
T Consensus         6 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~   82 (358)
T 1zg3_A            6 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHG--KPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTI   82 (358)
T ss_dssp             CCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHT--SCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcC--CCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEec
Confidence            45566788999999999999999999999999999853  48999999999999 2224779999999999999999861


Q ss_pred             ----c-CCCccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcC--CChhhhhcCCChhhhhcCCc
Q 035738           88 ----D-ASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEG--GIPFNRAHGMHTFEYAGLDP  160 (333)
Q Consensus        88 ----~-~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g--~~~~~~~~g~~~~~~~~~~~  160 (333)
                          + +|..++.|++|+.+..|..+.+ .++++++.+...+.+++.|.+|+++++++  .++|+.++|.++|+|+.++|
T Consensus        83 ~~~~~~~g~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p  161 (358)
T 1zg3_A           83 VKGKEGDEEEEIAYSLTPPSKLLISGKP-TCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDS  161 (358)
T ss_dssp             ECCSSSSCCCEEEEEECHHHHTTCTTST-TCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGG
T ss_pred             ccccccCCCCCCEEeCCHHHHHHhCCCC-ccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcCh
Confidence                0 1111479999999997776554 57888888766667789999999999998  67899889988999999999


Q ss_pred             hhHH--HHHHHHhhhhhhhHHHHHhhcc-CCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCCCCe--
Q 035738          161 GFNK--HFNTVMYNYTSLVMSNILESYK-GFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM--  235 (333)
Q Consensus       161 ~~~~--~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~gv--  235 (333)
                      +..+  .|+.+|...+.... .+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+++  
T Consensus       162 ~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~  240 (358)
T 1zg3_A          162 ESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNF  240 (358)
T ss_dssp             GHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEE
T ss_pred             hhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEE
Confidence            9999  99999998887766 7777772 2677889999999999999999999999999999999999988764322  


Q ss_pred             ------------------EEEccCChhHHHHHHHHHHHhCCC---CcEEEEEeeecCCCCCCccccccccchhhHHHhhC
Q 035738          236 ------------------WILHDWNDEHCLKLLKNCYKSIPE---DGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQS  294 (333)
Q Consensus       236 ------------------~vLh~~~~~~~~~lL~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~  294 (333)
                                        ++||+|+++++.++|++++++|+|   ||+++|+|...++....+........+++.|+.. 
T Consensus       241 ~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-  319 (358)
T 1zg3_A          241 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTM-  319 (358)
T ss_dssp             EECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHH-
T ss_pred             EeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhcc-
Confidence                              889999999999999999999999   9999999998876533210112345677777764 


Q ss_pred             CCCCcCCHHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738          295 PGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       295 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  333 (333)
                      .+|+.|+.++|.++|+++||+.+++++.++..++||++|
T Consensus       320 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  358 (358)
T 1zg3_A          320 FLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP  358 (358)
T ss_dssp             HSCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred             CCCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence            489999999999999999999999999888889999986

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=100.00  E-value=4.1e-46  Score=341.90  Aligned_cols=295  Identities=23%  Similarity=0.334  Sum_probs=258.5

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccc
Q 035738           15 YANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARR   94 (333)
Q Consensus        15 ~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~   94 (333)
                      .|.+++.||+.+++|++|+++||||.|.+    ||.|++|||+++|+    +++.++||||+|++.|++.++     +++
T Consensus         8 ~l~~~~~g~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~~-----~~~   74 (332)
T 3i53_A            8 IGLRALADLATPMAVRVAATLRVADHIAA----GHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTRD-----GQG   74 (332)
T ss_dssp             SCHHHHTCCHHHHHHHHHHHHTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-----TTS
T ss_pred             HHHHHHHhhHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEec-----CCC
Confidence            47889999999999999999999999987    59999999999999    999999999999999999986     368


Q ss_pred             cccccccccccccCCCCCChhhhHhhccChhhH-HhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHHHHHHHhhh
Q 035738           95 LYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFL-ECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNY  173 (333)
Q Consensus        95 ~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~  173 (333)
                      .|.+|+.++.+..+.. .++.+++.+...+..+ ..|.+|.++++++.++|+..+|.++|+++.++|+....|.++|...
T Consensus        75 ~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~  153 (332)
T 3i53_A           75 VYGLTEFGEQLRDDHA-AGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHH  153 (332)
T ss_dssp             BEEECTTGGGGSTTCT-TCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             eEEcCHhHHHHhcCCc-hhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHh
Confidence            9999999998865543 5788888765444455 7899999999999999998999889999999999999999999998


Q ss_pred             hhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC---------------------
Q 035738          174 TSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH---------------------  232 (333)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---------------------  232 (333)
                      .....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.                     
T Consensus       154 ~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  232 (332)
T 3i53_A          154 LELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPL  232 (332)
T ss_dssp             HHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC
T ss_pred             HHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCC
Confidence            8877777777777 778899999999999999999999999999999998888776531                     


Q ss_pred             C-C--e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHH
Q 035738          233 P-C--M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEF  305 (333)
Q Consensus       233 ~-g--v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~  305 (333)
                      | +  +    ++||+|+++++.++|++++++|+|||+++|.|.+.++. .+      ...+++.|+.. .+++.||.++|
T Consensus       233 p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~------~~~~d~~~~~~-~~~~~~t~~e~  304 (332)
T 3i53_A          233 PAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HA------GTGMDLRMLTY-FGGKERSLAEL  304 (332)
T ss_dssp             CCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----C------CHHHHHHHHHH-HSCCCCCHHHH
T ss_pred             CCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-Cc------cHHHHHHHHhh-CCCCCCCHHHH
Confidence            1 1  1    88999999999999999999999999999999988764 11      24678888766 48999999999


Q ss_pred             HHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738          306 MTLATGAGFSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       306 ~~ll~~aGf~~~~~~~~~~~~~vie~~~  333 (333)
                      .++|+++||+.+++++.++ +++||++|
T Consensus       305 ~~ll~~aGf~~~~~~~~~~-~~vie~r~  331 (332)
T 3i53_A          305 GELAAQAGLAVRAAHPISY-VSIVEMTA  331 (332)
T ss_dssp             HHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred             HHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence            9999999999999999988 99999875

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=100.00  E-value=4e-45  Score=337.91  Aligned_cols=318  Identities=27%  Similarity=0.439  Sum_probs=269.8

Q ss_pred             chhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceee
Q 035738            6 DGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVEC   85 (333)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~   85 (333)
                      +.+-++....|++++.+++.+++|++++++|||+.|++.+  ||.|++|||+++|+ .|.+++.++||||+|++.|+|++
T Consensus        10 ~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~   86 (352)
T 1fp2_A           10 PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEI   86 (352)
T ss_dssp             STHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEE
T ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcC--CCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEE
Confidence            3567788899999999999999999999999999999753  48999999999999 12237789999999999999998


Q ss_pred             eccCCCccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHh-cCCChhhhhcCCChhhhhcCCchhHH
Q 035738           86 SLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAIL-EGGIPFNRAHGMHTFEYAGLDPGFNK  164 (333)
Q Consensus        86 ~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~g~~~~~~~~g~~~~~~~~~~~~~~~  164 (333)
                      ++ +  .++.|++|+.+..|..+.+ .++++++.+...+.++..|.+|+++++ +|.++|+..+|.++|+++.++|+..+
T Consensus        87 ~~-~--~~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~  162 (352)
T 1fp2_A           87 IT-K--EEESYALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNT  162 (352)
T ss_dssp             EE-S--SSEEEEECHHHHTTSTTSS-SCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHH
T ss_pred             ec-C--CCCeEeCCHHHHHHhCCCC-ccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHH
Confidence            61 0  1579999999998776544 578888887666677889999999999 88889998899899999999999999


Q ss_pred             HHHHHHhhhhhhhHHHHHhhcc-CCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCCCCe--------
Q 035738          165 HFNTVMYNYTSLVMSNILESYK-GFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM--------  235 (333)
Q Consensus       165 ~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~gv--------  235 (333)
                      .|..+|........+. +..++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+++        
T Consensus       163 ~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~  241 (352)
T 1fp2_A          163 SFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMF  241 (352)
T ss_dssp             HHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTT
T ss_pred             HHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEecccc
Confidence            9999999988876666 67672 2778899999999999999999999999999999999999988864322        


Q ss_pred             ------------EEEccCChhHHHHHHHHHHHhCCC---CcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcC
Q 035738          236 ------------WILHDWNDEHCLKLLKNCYKSIPE---DGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKER  300 (333)
Q Consensus       236 ------------~vLh~~~~~~~~~lL~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~r  300 (333)
                                  ++||+|+++++.++|++++++|+|   ||+++|.|...++....+........+++.|+. . +|+.|
T Consensus       242 ~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~g~~~  319 (352)
T 1fp2_A          242 TSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKER  319 (352)
T ss_dssp             TCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCE
T ss_pred             CCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c-cCCCC
Confidence                        889999999999999999999999   999999999887643221001123456777765 3 58899


Q ss_pred             CHHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738          301 TRHEFMTLATGAGFSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       301 t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  333 (333)
                      +.++|.++|+++||+.+++++.++..++||++|
T Consensus       320 t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  352 (352)
T 1fp2_A          320 NEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP  352 (352)
T ss_dssp             EHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             CHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence            999999999999999999999888889999987

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=100.00  E-value=6.6e-45  Score=334.10  Aligned_cols=299  Identities=21%  Similarity=0.325  Sum_probs=261.9

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCC
Q 035738           11 QSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDAS   90 (333)
Q Consensus        11 ~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~   90 (333)
                      .+...|++++.|++.+++|++++++|||+.|.+    ||.|++|||+++|+    +++.++||||+|++.|+++++    
T Consensus         7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~----~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~~----   74 (334)
T 2ip2_A            7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES----GIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQGD----   74 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEec----
Confidence            677899999999999999999999999999986    59999999999999    999999999999999999987    


Q ss_pred             CccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHHHHHHH
Q 035738           91 GARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVM  170 (333)
Q Consensus        91 ~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m  170 (333)
                       +++.|++|+.+..+. +. +.++++++.+...+.+ ..|.+|.++++++.++|+..+|.++|+++.++|+....|+++|
T Consensus        75 -~~~~y~~t~~s~~l~-~~-~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m  150 (334)
T 2ip2_A           75 -TRDGYANTPTSHLLR-DV-EGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM  150 (334)
T ss_dssp             -TTTEEEECHHHHTTS-SS-TTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH
T ss_pred             -CCCeEecCHHHHHHh-CC-CccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH
Confidence             357999999998877 43 3478888877655444 8999999999999999998889889999999999999999999


Q ss_pred             hhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC------------------
Q 035738          171 YNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH------------------  232 (333)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------------------  232 (333)
                       ..+....+.+++.++ +++ .+|||||||+|..+..+++++|+.+++++|+|.+++.+++.                  
T Consensus       151 -~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  227 (334)
T 2ip2_A          151 -KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDML  227 (334)
T ss_dssp             -GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTT
T ss_pred             -HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCC
Confidence             888877888888887 777 99999999999999999999999999999998787765431                  


Q ss_pred             ---C---Ce----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCH
Q 035738          233 ---P---CM----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTR  302 (333)
Q Consensus       233 ---~---gv----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~  302 (333)
                         +   ++    ++||+|+++++.++|++++++|+|||+++|.|...++....    .....+++.|+... +|+.|+.
T Consensus       228 ~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~t~  302 (334)
T 2ip2_A          228 QEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPS----PMSVLWDVHLFMAC-AGRHRTT  302 (334)
T ss_dssp             TCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCC----HHHHHHHHHHHHHH-SCCCCBH
T ss_pred             CCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhHHhhhHhHhhC-CCcCCCH
Confidence               1   11    88999999999999999999999999999999987764321    23456677777654 7899999


Q ss_pred             HHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738          303 HEFMTLATGAGFSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       303 ~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  333 (333)
                      ++|.++|+++||+.+++++.++..++||++|
T Consensus       303 ~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  333 (334)
T 2ip2_A          303 EEVVDLLGRGGFAVERIVDLPMETRMIVAAR  333 (334)
T ss_dssp             HHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred             HHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence            9999999999999999999988899999986

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=100.00  E-value=1.3e-42  Score=322.18  Aligned_cols=306  Identities=16%  Similarity=0.181  Sum_probs=242.8

Q ss_pred             hhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738            7 GERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus         7 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .+-++...++++++.|++.+++|++++++||||.|++.+  ||.|++|||+++|+    +++.++||||+|++.|+|+++
T Consensus        10 ~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~--~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~~   83 (363)
T 3dp7_A           10 CTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKR--EGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILLE   83 (363)
T ss_dssp             CCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCT--TCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcC--CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEec
Confidence            455678889999999999999999999999999999842  59999999999999    999999999999999999885


Q ss_pred             ccCCCccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcC--CChhhhhcCCchhHH
Q 035738           87 LDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHG--MHTFEYAGLDPGFNK  164 (333)
Q Consensus        87 ~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g--~~~~~~~~~~~~~~~  164 (333)
                            +++|++|+.+..|..++.   ...++.+. .+..++.|.+|++++++|.+++...+|  .++|+++.++|+..+
T Consensus        84 ------~~~y~~t~~s~~L~~~~~---~~~~~~~~-~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~  153 (363)
T 3dp7_A           84 ------EDRYVLAKAGWFLLNDKM---ARVNMEFN-HDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQ  153 (363)
T ss_dssp             ------TTEEEECHHHHHHHHCHH---HHHHHHHH-HHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHH
T ss_pred             ------CCEEecccchHHhhCCCc---ccchheee-cHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHH
Confidence                  689999999987776542   12223332 355788999999999999988888888  689999999998665


Q ss_pred             ----HHHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC--------
Q 035738          165 ----HFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH--------  232 (333)
Q Consensus       165 ----~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--------  232 (333)
                          .|+.+|.....   ..++..+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.++++        
T Consensus       154 ~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~  229 (363)
T 3dp7_A          154 KSWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSE  229 (363)
T ss_dssp             HHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGG
T ss_pred             HHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCccc
Confidence                36666654332   23444443 356789999999999999999999999999999998887765421        


Q ss_pred             ----------------CC---e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccc-cccccchhh
Q 035738          233 ----------------PC---M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIE-SKSNSDSDV  288 (333)
Q Consensus       233 ----------------~g---v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~-~~~~~~~d~  288 (333)
                                      |+   +    ++||+|+++++.++|++++++|+|||+|+|+|.+.++....... .......++
T Consensus       230 ~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~  309 (363)
T 3dp7_A          230 RIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYF  309 (363)
T ss_dssp             GEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHH
T ss_pred             ceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhH
Confidence                            11   1    78999999999999999999999999999999988764321100 000112233


Q ss_pred             HHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecC-CceeEEEEeC
Q 035738          289 LMMIQSPGGKERTRHEFMTLATGAGFSGISCERAI-GNLWVMEFYK  333 (333)
Q Consensus       289 ~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~  333 (333)
                      .|+.. .+++.|+.++|.++|+++||+++++++.. .++++|++.|
T Consensus       310 ~~~~~-~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~  354 (363)
T 3dp7_A          310 TAMAN-GNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL  354 (363)
T ss_dssp             HHSSC-SSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred             HhhhC-CCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence            33332 46789999999999999999999998765 5589999874

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=100.00  E-value=3.6e-42  Score=320.56  Aligned_cols=305  Identities=20%  Similarity=0.336  Sum_probs=258.4

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeecc
Q 035738            9 RDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLD   88 (333)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~   88 (333)
                      ..+.+..|++++.+++.+++|++++++|||+.|.+    ||.|++|||+++|+    +++.++||||+|++.|++++.  
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~~~--   82 (374)
T 1qzz_A           13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGG--   82 (374)
T ss_dssp             CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECC--
T ss_pred             CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEEEe--
Confidence            56788899999999999999999999999999975    59999999999999    999999999999999999985  


Q ss_pred             CCCccc--cccccccccccccCCCCCChhhhHhhccChhhH-HhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHH
Q 035738           89 ASGARR--LYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFL-ECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKH  165 (333)
Q Consensus        89 ~~~~~~--~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~  165 (333)
                         .++  .|.+|+.+..+..+.. .++.+++.+...+..+ ..|.+|.+.++++.++|+..+|.++|+++.++|+....
T Consensus        83 ---~~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~  158 (374)
T 1qzz_A           83 ---EKQGRPLRPTRLGMLLADGHP-AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADS  158 (374)
T ss_dssp             ---CC-CCCCEECTTGGGGSTTCT-TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHH
T ss_pred             ---CCCCeEEEEChHHHhhcCCCc-ccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHH
Confidence               245  8999999987776543 4788888765434456 78999999999999999988898999999999999999


Q ss_pred             HHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-------------
Q 035738          166 FNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH-------------  232 (333)
Q Consensus       166 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------------  232 (333)
                      |..+|........+.+++.++ +.+..+|||||||+|.++..+++++|+++++++|++.+++.+++.             
T Consensus       159 f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~  237 (374)
T 1qzz_A          159 FDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVA  237 (374)
T ss_dssp             HHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred             HHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEE
Confidence            999999888777788888877 788899999999999999999999999999999998888766431             


Q ss_pred             --------CC-e------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee--ecCCCCCCccccccccchhhHHHhhCC
Q 035738          233 --------PC-M------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL--MLPEVPNTSIESKSNSDSDVLMMIQSP  295 (333)
Q Consensus       233 --------~g-v------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~--~~~~~~~~~~~~~~~~~~d~~m~~~~~  295 (333)
                              +. .      ++||+|+++++.++|++++++|+|||+++|.|.  ..++...    ......+++.|+.. .
T Consensus       238 ~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~-~  312 (374)
T 1qzz_A          238 EGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD----RFFSTLLDLRMLTF-M  312 (374)
T ss_dssp             ECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-----------HHHHHHHHHHHHHH-H
T ss_pred             eCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCC----cchhhhcchHHHHh-C
Confidence                    11 1      788999999989999999999999999999999  7655321    12234567777655 3


Q ss_pred             CCCcCCHHHHHHHHHhCCCCeeEEeecCCce-----eEEEEeC
Q 035738          296 GGKERTRHEFMTLATGAGFSGISCERAIGNL-----WVMEFYK  333 (333)
Q Consensus       296 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~-----~vie~~~  333 (333)
                      +++.++.++|.++|+++||+++++++.++..     ++|+++|
T Consensus       313 ~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~  355 (374)
T 1qzz_A          313 GGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA  355 (374)
T ss_dssp             SCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             CCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence            7899999999999999999999999988777     8999874

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=100.00  E-value=2.1e-41  Score=313.94  Aligned_cols=303  Identities=18%  Similarity=0.295  Sum_probs=259.0

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCC
Q 035738           11 QSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDAS   90 (333)
Q Consensus        11 ~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~   90 (333)
                      ...+++++++.+++.+++|+++.++|||+.|.+    ||.|++|||+++|+    +++.++|+|++|++.|+|++.    
T Consensus        18 ~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~~----   85 (360)
T 1tw3_A           18 IDALRTLIRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED----   85 (360)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----
T ss_pred             cchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEec----
Confidence            456888999999999999999999999999975    59999999999999    999999999999999999986    


Q ss_pred             CccccccccccccccccCCCCCChhhhHhhccChh-hHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHHHHHH
Q 035738           91 GARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKV-FLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTV  169 (333)
Q Consensus        91 ~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~  169 (333)
                       .++.|++|+.+..+..+.+ .++.+++.+...+. .+..|.+|.+.+++|.++++..+|.++|+++.++|+....|..+
T Consensus        86 -~~g~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~  163 (360)
T 1tw3_A           86 -APGEFVPTEVGELLADDHP-AAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSL  163 (360)
T ss_dssp             -ETTEEEECTTGGGGSTTST-TCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHH
T ss_pred             -CCCeEEeCHHHHHHhcCCc-hhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHH
Confidence             3678999999887776543 57888777654333 56789999999999998888888988999999999999999999


Q ss_pred             HhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC------C-Ce-------
Q 035738          170 MYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH------P-CM-------  235 (333)
Q Consensus       170 m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------~-gv-------  235 (333)
                      |........+.+++.++ +.+..+|||||||+|.++..+++++|+++++++|++.+++.++++      . ++       
T Consensus       164 ~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~  242 (360)
T 1tw3_A          164 LACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDF  242 (360)
T ss_dssp             HTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             HHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCC
Confidence            99888877788888887 788899999999999999999999999999999998777765431      0 11       


Q ss_pred             --------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeee-cCCCCCCccccccccchhhHHHhhCCCCCcC
Q 035738          236 --------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM-LPEVPNTSIESKSNSDSDVLMMIQSPGGKER  300 (333)
Q Consensus       236 --------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~-~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~r  300 (333)
                                    ++||+|+++++.++|++++++|+|||+++|.|.. .++....    .....+++.|+... +++.+
T Consensus       243 ~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~  317 (360)
T 1tw3_A          243 FEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN----EQFTELDLRMLVFL-GGALR  317 (360)
T ss_dssp             TSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHH-SCCCC
T ss_pred             CCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCc----chhhhccHHHhhhc-CCcCC
Confidence                          7889999999899999999999999999999998 6543221    12345677776553 78999


Q ss_pred             CHHHHHHHHHhCCCCeeEEeecCCc-----eeEEEEeC
Q 035738          301 TRHEFMTLATGAGFSGISCERAIGN-----LWVMEFYK  333 (333)
Q Consensus       301 t~~e~~~ll~~aGf~~~~~~~~~~~-----~~vie~~~  333 (333)
                      +.++|.++|+++||+++++++.++.     .++|+++|
T Consensus       318 t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~  355 (360)
T 1tw3_A          318 TREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP  355 (360)
T ss_dssp             BHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             CHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence            9999999999999999999988765     78999875

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=100.00  E-value=4.3e-41  Score=310.89  Aligned_cols=302  Identities=14%  Similarity=0.211  Sum_probs=249.7

Q ss_pred             CCcCchhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhccc
Q 035738            2 DSIVDGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYS   81 (333)
Q Consensus         2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g   81 (333)
                      .++.|.+++++...+++++.|++.+++|++|+++|||+.|.+     |.|++|||+++|+    +++.++||||+|++.|
T Consensus        14 ~~~~~~~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~-----~~t~~elA~~~~~----~~~~l~rlLr~L~~~g   84 (352)
T 3mcz_A           14 ESTEDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQT-----GRTPAEVAASFGM----VEGKAAILLHALAALG   84 (352)
T ss_dssp             SCCCSCCCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTS-----CBCHHHHHHHHTC----CHHHHHHHHHHHHHTT
T ss_pred             HhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhCC-----CCCHHHHHHHhCc----ChHHHHHHHHHHHHCC
Confidence            357788899999999999999999999999999999999964     8999999999999    9999999999999999


Q ss_pred             ceeeeccCCCccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCCh-hhhhcCCChhhhhcCCc
Q 035738           82 VVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIP-FNRAHGMHTFEYAGLDP  160 (333)
Q Consensus        82 ~l~~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~-~~~~~g~~~~~~~~~~~  160 (333)
                      +++++      ++.|.+|+.+..++.++.+.+++.++.+.  ...++.|.+|.+++++|.+. |+.      ..++.++|
T Consensus        85 ll~~~------~~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~------~~~~~~~~  150 (352)
T 3mcz_A           85 LLTKE------GDAFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQ------ESRFAHDT  150 (352)
T ss_dssp             SEEEE------TTEEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSH------HHHTTTCH
T ss_pred             CeEec------CCeeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCccc------ccccccCH
Confidence            99987      57899999998766555556788777653  34678899999999998653 222      12346788


Q ss_pred             hhHHHHHHHHhhhhhhhHHHHHhhccCCCC-CCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-------
Q 035738          161 GFNKHFNTVMYNYTSLVMSNILESYKGFDN-IKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH-------  232 (333)
Q Consensus       161 ~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~-~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------  232 (333)
                      +....|..+|...... ...+++.++ +.+ ..+|||||||+|.++..+++++|+++++++|+|.+++.+++.       
T Consensus       151 ~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~  228 (352)
T 3mcz_A          151 RARDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLG  228 (352)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCC
Confidence            8899999999884433 346778777 666 899999999999999999999999999999998887655421       


Q ss_pred             -------------C-----Ce------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhh
Q 035738          233 -------------P-----CM------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDV  288 (333)
Q Consensus       233 -------------~-----gv------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~  288 (333)
                                   +     +.      ++||+|+++++.++|++++++|+|||+++|.|.+.++....+   .....+++
T Consensus       229 ~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~  305 (352)
T 3mcz_A          229 GRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTP---ALSADFSL  305 (352)
T ss_dssp             GGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSS---HHHHHHHH
T ss_pred             CceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCC---chHHHhhH
Confidence                         0     01      889999999999999999999999999999999887754322   23456788


Q ss_pred             HHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738          289 LMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       289 ~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  333 (333)
                      .|+..+.+++.++.++|.++|+++||++++..  .+.++++.++|
T Consensus       306 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k  348 (352)
T 3mcz_A          306 HMMVNTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR  348 (352)
T ss_dssp             HHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred             HHHhhCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence            88765568999999999999999999998843  35577777765

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=100.00  E-value=6.9e-41  Score=307.28  Aligned_cols=294  Identities=17%  Similarity=0.198  Sum_probs=250.9

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcc
Q 035738           14 AYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGAR   93 (333)
Q Consensus        14 ~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~   93 (333)
                      +.+++++.|++.+++|++++++|||+.|++    ||.|++|||+++|+    +++.++|||++|++.|+|++.      +
T Consensus         8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~~------~   73 (335)
T 2r3s_A            8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ----GIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTKQ------A   73 (335)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT----SEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEec------C
Confidence            678999999999999999999999999997    49999999999999    999999999999999999875      6


Q ss_pred             cccccccccc-ccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHHHHHHHhh
Q 035738           94 RLYSLNSVSK-YYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYN  172 (333)
Q Consensus        94 ~~y~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~  172 (333)
                      +.|++|+.+. .+..+. +.++++++.+...+..+..|.+|.++++++.++|+     . |+++.++++....|...|..
T Consensus        74 ~~y~~t~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~  146 (335)
T 2r3s_A           74 EGYRLTSDSAMFLDRQS-KFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAMSP  146 (335)
T ss_dssp             TEEEECHHHHHHTCTTS-TTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHSGG
T ss_pred             CEEecCHHHHHHhccCC-cHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHHHH
Confidence            8999999994 555443 35788888876555678899999999999887654     2 78888899999999999998


Q ss_pred             hhhhhHHHHHhhccCC--CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC------------------
Q 035738          173 YTSLVMSNILESYKGF--DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH------------------  232 (333)
Q Consensus       173 ~~~~~~~~~~~~~~~~--~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------------------  232 (333)
                      ........+++.++ +  .+..+|||||||+|.++..+++++|+.+++++|++.+++.+++.                  
T Consensus       147 ~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  225 (335)
T 2r3s_A          147 MMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAF  225 (335)
T ss_dssp             GGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTT
T ss_pred             HHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccc
Confidence            88887788888887 6  78899999999999999999999999999999998777655431                  


Q ss_pred             ----CC-e------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCC
Q 035738          233 ----PC-M------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERT  301 (333)
Q Consensus       233 ----~g-v------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt  301 (333)
                          ++ .      +++|+|+++++.++|++++++|+|||+++|+|...++....+   .....+++.|+....+++.++
T Consensus       226 ~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t  302 (335)
T 2r3s_A          226 EVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDAYT  302 (335)
T ss_dssp             TSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCCCC
T ss_pred             cCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCcCC
Confidence                11 1      788999999999999999999999999999999877643221   233566777776655789999


Q ss_pred             HHHHHHHHHhCCCCeeEEeecCCceeEEEEe
Q 035738          302 RHEFMTLATGAGFSGISCERAIGNLWVMEFY  332 (333)
Q Consensus       302 ~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~  332 (333)
                      .++|.++|+++||+.+++.+..+..++|+++
T Consensus       303 ~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~  333 (335)
T 2r3s_A          303 FAEYESMFSNAGFSHSQLHSLPTTQQQVIVA  333 (335)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred             HHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence            9999999999999999999988888877765

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=100.00  E-value=1.7e-40  Score=307.77  Aligned_cols=295  Identities=17%  Similarity=0.281  Sum_probs=246.0

Q ss_pred             chhhhHHHHHHHHHHh-hhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhccccee
Q 035738            6 DGERDQSFAYANQLAR-GIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVE   84 (333)
Q Consensus         6 ~~~~~~~~~~l~~~~~-~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~   84 (333)
                      +.+.++...++++++. |++.+++|++++++|||+.|++    ||.|++|||+++|+    +++.++||||+|++.|+|+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~----~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~   95 (359)
T 1x19_A           24 NNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE----GPKDLATLAADTGS----VPPRLEMLLETLRQMRVIN   95 (359)
T ss_dssp             CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEE
T ss_pred             ccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC----CCCCHHHHHHHhCc----ChHHHHHHHHHHHhCCCeE
Confidence            3456778888899986 8999999999999999999987    49999999999999    9999999999999999999


Q ss_pred             eeccCCCccccccccccccccccCCCC---CChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCch
Q 035738           85 CSLDASGARRLYSLNSVSKYYVPNKDG---VSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPG  161 (333)
Q Consensus        85 ~~~~~~~~~~~y~~t~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~  161 (333)
                      ++      ++.|++|+.+..++.++++   .++++++.+. ...+++.|.+|+++++++.+          |+++.++|+
T Consensus        96 ~~------~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~~p~  158 (359)
T 1x19_A           96 LE------DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVPYPP  158 (359)
T ss_dssp             EE------TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSCSSC
T ss_pred             ee------CCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------CcccccCch
Confidence            86      5699999976655444433   4788887765 35678899999999998763          566777888


Q ss_pred             ---hHHHHHHHHhhhhh-hhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-----
Q 035738          162 ---FNKHFNTVMYNYTS-LVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH-----  232 (333)
Q Consensus       162 ---~~~~f~~~m~~~~~-~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-----  232 (333)
                         ....|..+|..... ...+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++++     
T Consensus       159 ~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~  237 (359)
T 1x19_A          159 VTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKG  237 (359)
T ss_dssp             CSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcC
Confidence               88999999999888 77888888887 888899999999999999999999999999999998888766531     


Q ss_pred             -C------------------Ce----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhH
Q 035738          233 -P------------------CM----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVL  289 (333)
Q Consensus       233 -~------------------gv----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~  289 (333)
                       +                  ++    ++||+|+++++.++|++++++|+|||+++|+|...++. ..+.   ....+  .
T Consensus       238 ~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~---~~~~~--~  311 (359)
T 1x19_A          238 VADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP-ENPN---FDYLS--H  311 (359)
T ss_dssp             CTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT-TSCC---HHHHH--H
T ss_pred             CCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC-CCch---HHHHH--H
Confidence             1                  11    88999999889999999999999999999999987764 2111   11222  3


Q ss_pred             HHhhCCCCCc----CCHHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738          290 MMIQSPGGKE----RTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       290 m~~~~~~g~~----rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  333 (333)
                      |+....+++.    ++.++|.++|+++||+.+++++.+ ..++|+++|
T Consensus       312 ~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k  358 (359)
T 1x19_A          312 YILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK  358 (359)
T ss_dssp             HGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred             HHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence            3332335777    999999999999999999999987 788999886

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.71  E-value=4.9e-17  Score=143.33  Aligned_cols=144  Identities=17%  Similarity=0.118  Sum_probs=100.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hhHhhhCCCC-------CCe---------------------E
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKY--PYIKGINFDL-PHVIEHVPPH-------PCM---------------------W  236 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~gv---------------------~  236 (333)
                      ..++.+|||||||+|..+..+++++  |+++++++|+ +.+++.|+++       .++                     .
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~  147 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF  147 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence            5578899999999999999999975  6789999999 8899887642       111                     6


Q ss_pred             EEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccccccc-chhhHHH-------------hhCCCCCcCCH
Q 035738          237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNS-DSDVLMM-------------IQSPGGKERTR  302 (333)
Q Consensus       237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~-~~d~~m~-------------~~~~~g~~rt~  302 (333)
                      +||++++++..++|++++++|+|||++++.|...+++....  ..... ..++...             ....--...+.
T Consensus       148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~--~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~  225 (261)
T 4gek_A          148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVG--ELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV  225 (261)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHH--HHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCH
T ss_pred             eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCH
Confidence            78899988888999999999999999999999876542110  00000 0000000             00000134688


Q ss_pred             HHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738          303 HEFMTLATGAGFSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       303 ~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  333 (333)
                      +++.++|++|||+.++++-....+.-+.++|
T Consensus       226 ~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K  256 (261)
T 4gek_A          226 ETHKARLHKAGFEHSELWFQCFNFGSLVALK  256 (261)
T ss_dssp             HHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence            9999999999999999864433333333444

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.65  E-value=1.4e-15  Score=131.54  Aligned_cols=153  Identities=19%  Similarity=0.174  Sum_probs=107.9

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CCe------------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PCM------------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~gv------------------  235 (333)
                      ..+...+....+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++.    +++                  
T Consensus        33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~  112 (234)
T 3dtn_A           33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM  112 (234)
T ss_dssp             HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred             HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence            34444444345678999999999999999999999999999999 8887766432    111                  


Q ss_pred             ----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhh-----------HH-HhhCCCCCc
Q 035738          236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDV-----------LM-MIQSPGGKE  299 (333)
Q Consensus       236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~-----------~m-~~~~~~g~~  299 (333)
                          .++|++++++..++|++++++|+|||++++.+...++....... ....+...           .. .........
T Consensus       113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (234)
T 3dtn_A          113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENL-NKTIWRQYVENSGLTEEEIAAGYERSKLDKD  191 (234)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHH-HHHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhH-HHHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence                77888998887789999999999999999999877653210000 00000000           00 000012345


Q ss_pred             CCHHHHHHHHHhCCCCeeEEeecCCceeEEEEe
Q 035738          300 RTRHEFMTLATGAGFSGISCERAIGNLWVMEFY  332 (333)
Q Consensus       300 rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~  332 (333)
                      ++.++|.++|++|||+.++++.....++++-.+
T Consensus       192 ~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~  224 (234)
T 3dtn_A          192 IEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGR  224 (234)
T ss_dssp             CBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEE
T ss_pred             cCHHHHHHHHHHcCCCceeeeeeecceeEEEEE
Confidence            689999999999999999998887777766544

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.54  E-value=1.5e-14  Score=123.70  Aligned_cols=135  Identities=13%  Similarity=0.135  Sum_probs=103.1

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC------CCe---------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH------PCM---------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~gv---------------  235 (333)
                      ..++..++ .....+|||||||+|.++..+++.. |..+++++|+ +.+++.+++.      +++               
T Consensus        27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~  105 (219)
T 3dh0_A           27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN  105 (219)
T ss_dssp             HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred             HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence            45555555 6778899999999999999999987 8889999999 7887766432      111               


Q ss_pred             --------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHH
Q 035738          236 --------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMT  307 (333)
Q Consensus       236 --------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~  307 (333)
                              .++|++++.  ..+|++++++|+|||++++.+..........                 .....++.++|.+
T Consensus       106 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~  166 (219)
T 3dh0_A          106 TVDFIFMAFTFHELSEP--LKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------PPEEVYSEWEVGL  166 (219)
T ss_dssp             CEEEEEEESCGGGCSSH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------CGGGSCCHHHHHH
T ss_pred             CeeEEEeehhhhhcCCH--HHHHHHHHHHhCCCeEEEEEEecccccccCC-----------------chhcccCHHHHHH
Confidence                    667777655  4899999999999999999998655431110                 0122357999999


Q ss_pred             HHHhCCCCeeEEeecCCceeEEEEeC
Q 035738          308 LATGAGFSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       308 ll~~aGf~~~~~~~~~~~~~vie~~~  333 (333)
                      +++++||+++++.........+.+.|
T Consensus       167 ~l~~~Gf~~~~~~~~~~~~~~~~~~k  192 (219)
T 3dh0_A          167 ILEDAGIRVGRVVEVGKYCFGVYAMI  192 (219)
T ss_dssp             HHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred             HHHHCCCEEEEEEeeCCceEEEEEEe
Confidence            99999999999988877666665553

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.52  E-value=3.7e-14  Score=121.30  Aligned_cols=148  Identities=12%  Similarity=0.123  Sum_probs=97.6

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-C----------------C---e---
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-P----------------C---M---  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~----------------g---v---  235 (333)
                      .+++.+. ..+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++. +                +   +   
T Consensus        36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~  112 (220)
T 3hnr_A           36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS  112 (220)
T ss_dssp             HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred             HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence            3444443 446789999999999999999987  568999999 7777665421 0                1   1   


Q ss_pred             -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhH--HHhhCCCCCcCCHHHHHHHHHhC
Q 035738          236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVL--MMIQSPGGKERTRHEFMTLATGA  312 (333)
Q Consensus       236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~--m~~~~~~g~~rt~~e~~~ll~~a  312 (333)
                       .++|++++++...+|++++++|+|||++++.++..+................+.  .... .....++.++|.++|+++
T Consensus       113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~a  191 (220)
T 3hnr_A          113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDL-QTEYYTRIPVMQTIFENN  191 (220)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHH-HHSCCCBHHHHHHHHHHT
T ss_pred             CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhc-chhhcCCHHHHHHHHHHC
Confidence             778899988877799999999999999999997654421100000000000000  0000 012345889999999999


Q ss_pred             CCCeeEEeecCCceeEEEEe
Q 035738          313 GFSGISCERAIGNLWVMEFY  332 (333)
Q Consensus       313 Gf~~~~~~~~~~~~~vie~~  332 (333)
                      ||+++.+.. ..+..+++..
T Consensus       192 Gf~v~~~~~-~~~~w~~~~~  210 (220)
T 3hnr_A          192 GFHVTFTRL-NHFVWVMEAT  210 (220)
T ss_dssp             TEEEEEEEC-SSSEEEEEEE
T ss_pred             CCEEEEeec-cceEEEEeeh
Confidence            997665544 4566666654

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.52  E-value=6.9e-14  Score=119.19  Aligned_cols=142  Identities=14%  Similarity=0.084  Sum_probs=95.0

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--CCe--------------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--PCM--------------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~gv--------------------  235 (333)
                      ..++..+.......+|||||||+|.++..+++.  ..+++++|+ +.+++.+++.  +++                    
T Consensus        35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~  112 (218)
T 3ou2_A           35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF  112 (218)
T ss_dssp             HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred             HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence            344454443556679999999999999999998  568999999 8888877642  111                    


Q ss_pred             --EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCC-------CCcCCHHHHH
Q 035738          236 --WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPG-------GKERTRHEFM  306 (333)
Q Consensus       236 --~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~-------g~~rt~~e~~  306 (333)
                        .++|+++++....+|+++++.|+|||++++.+...+..........  ....... .....       ....+.++|.
T Consensus       113 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  189 (218)
T 3ou2_A          113 FAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS--EPEVAVR-RTLQDGRSFRIVKVFRSPAELT  189 (218)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEEE-EECTTSCEEEEECCCCCHHHHH
T ss_pred             EechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhc--cccccee-eecCCcchhhHhhcCCCHHHHH
Confidence              6788999887789999999999999999999987643211100000  0000000 00011       1245899999


Q ss_pred             HHHHhCCCCeeEEeecCCc
Q 035738          307 TLATGAGFSGISCERAIGN  325 (333)
Q Consensus       307 ~ll~~aGf~~~~~~~~~~~  325 (333)
                      ++|+++||++......+.+
T Consensus       190 ~~l~~aGf~v~~~~~~~~~  208 (218)
T 3ou2_A          190 ERLTALGWSCSVDEVHPGF  208 (218)
T ss_dssp             HHHHHTTEEEEEEEEETTE
T ss_pred             HHHHHCCCEEEeeeccccc
Confidence            9999999995544444433

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.51  E-value=7.5e-15  Score=126.10  Aligned_cols=141  Identities=12%  Similarity=0.044  Sum_probs=93.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CC-----------------e------EEEcc
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PC-----------------M------WILHD  240 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~g-----------------v------~vLh~  240 (333)
                      ...+|||||||+|.++..+++..+  +++++|+ +.+++.+++.     ++                 .      .++|.
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~  115 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH  115 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence            478999999999999999999887  8999999 7887765431     11                 1      34445


Q ss_pred             CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccc---ccccchhhHHH--------hhC-CC-------CCcCC
Q 035738          241 WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIES---KSNSDSDVLMM--------IQS-PG-------GKERT  301 (333)
Q Consensus       241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~---~~~~~~d~~m~--------~~~-~~-------g~~rt  301 (333)
                      +..++..++|++++++|+|||++++.++..+.........   ....+....+.        ... .+       ....+
T Consensus       116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  195 (227)
T 1ve3_A          116 FEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWG  195 (227)
T ss_dssp             CCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeehhhhc
Confidence            5666677999999999999999999988533210000000   00000000000        000 00       01112


Q ss_pred             HHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738          302 RHEFMTLATGAGFSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       302 ~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  333 (333)
                       .+|.++|+++||+.+++...+.+..+|+.+|
T Consensus       196 -~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~  226 (227)
T 1ve3_A          196 -KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP  226 (227)
T ss_dssp             -HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred             -hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence             4899999999999999999887778998875

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.51  E-value=4.1e-15  Score=126.77  Aligned_cols=143  Identities=15%  Similarity=0.204  Sum_probs=97.3

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe---------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM---------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv---------------  235 (333)
                      ..++..++ ..+. +|||||||+|.++..+++. |+.+++++|+ +.+++.+++.       +++               
T Consensus        34 ~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  110 (219)
T 3dlc_A           34 ENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDN  110 (219)
T ss_dssp             HHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTT
T ss_pred             HHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcc
Confidence            34445444 4444 9999999999999999998 8889999999 7887766532       111               


Q ss_pred             --------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccc----ccccchhhHHHhhCCCCCcCCHH
Q 035738          236 --------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIES----KSNSDSDVLMMIQSPGGKERTRH  303 (333)
Q Consensus       236 --------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~----~~~~~~d~~m~~~~~~g~~rt~~  303 (333)
                              .++|++++..  ++|++++++|+|||++++.+...+.........    ....+.....    .....++.+
T Consensus       111 ~~D~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  184 (219)
T 3dlc_A          111 YADLIVSRGSVFFWEDVA--TAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNR----KNISQENVE  184 (219)
T ss_dssp             CEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHH----HHSSHHHHH
T ss_pred             cccEEEECchHhhccCHH--HHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhh----hccccCCHH
Confidence                    5677776554  899999999999999999886543310000000    0000111000    123345789


Q ss_pred             HHHHHHHhCCCCeeEEeecCCceeEEE
Q 035738          304 EFMTLATGAGFSGISCERAIGNLWVME  330 (333)
Q Consensus       304 e~~~ll~~aGf~~~~~~~~~~~~~vie  330 (333)
                      +|.++|+++||+.+++.....+..++.
T Consensus       185 ~~~~~l~~aGf~~v~~~~~~~~~~~~~  211 (219)
T 3dlc_A          185 RFQNVLDEIGISSYEIILGDEGFWIII  211 (219)
T ss_dssp             HHHHHHHHHTCSSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHcCCCeEEEEecCCceEEEE
Confidence            999999999999999998877665543

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.50  E-value=2.9e-13  Score=117.48  Aligned_cols=132  Identities=16%  Similarity=0.214  Sum_probs=96.1

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---------------C-C---e---
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---------------P-C---M---  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~-g---v---  235 (333)
                      ..+...++.+.+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++.               + +   +   
T Consensus        30 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i~~  107 (240)
T 3dli_A           30 ARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMI  107 (240)
T ss_dssp             HHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEEEE
T ss_pred             HHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEEEE
Confidence            334444443567789999999999999999987  457899999 7888776542               1 1   1   


Q ss_pred             -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCC
Q 035738          236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGF  314 (333)
Q Consensus       236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf  314 (333)
                       .++|++++++...+|++++++|+|||++++..+.....         ....+.. .. ......++.++|.++++++||
T Consensus       108 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------~~~~~~~-~~-~~~~~~~~~~~l~~~l~~aGf  176 (240)
T 3dli_A          108 SHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL---------YSLINFY-ID-PTHKKPVHPETLKFILEYLGF  176 (240)
T ss_dssp             ESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH---------HHHHHHT-TS-TTCCSCCCHHHHHHHHHHHTC
T ss_pred             CCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh---------HHHHHHh-cC-ccccccCCHHHHHHHHHHCCC
Confidence             77888998877899999999999999999987742210         0111111 11 113456789999999999999


Q ss_pred             CeeEEeecC
Q 035738          315 SGISCERAI  323 (333)
Q Consensus       315 ~~~~~~~~~  323 (333)
                      +++++....
T Consensus       177 ~~~~~~~~~  185 (240)
T 3dli_A          177 RDVKIEFFE  185 (240)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEEec
Confidence            999887654

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.49  E-value=1.2e-13  Score=121.43  Aligned_cols=136  Identities=17%  Similarity=0.263  Sum_probs=101.7

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CCe-----------------
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PCM-----------------  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~gv-----------------  235 (333)
                      ...+++.++ ..+..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++.    +++                 
T Consensus        44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  121 (266)
T 3ujc_A           44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF  121 (266)
T ss_dssp             HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred             HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence            345566665 6778899999999999999999987 679999999 7777765432    111                 


Q ss_pred             ------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHH
Q 035738          236 ------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLA  309 (333)
Q Consensus       236 ------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll  309 (333)
                            .++|++++++...+|++++++|+|||++++.++..+....      ....+.-....  .+...++.++|.+++
T Consensus       122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~l  193 (266)
T 3ujc_A          122 DLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKEN------WDDEFKEYVKQ--RKYTLITVEEYADIL  193 (266)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGG------CCHHHHHHHHH--HTCCCCCHHHHHHHH
T ss_pred             EEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCccc------chHHHHHHHhc--CCCCCCCHHHHHHHH
Confidence                  6788887777789999999999999999999987665111      11111111111  134567899999999


Q ss_pred             HhCCCCeeEEeecC
Q 035738          310 TGAGFSGISCERAI  323 (333)
Q Consensus       310 ~~aGf~~~~~~~~~  323 (333)
                      +++||+++++....
T Consensus       194 ~~~Gf~~~~~~~~~  207 (266)
T 3ujc_A          194 TACNFKNVVSKDLS  207 (266)
T ss_dssp             HHTTCEEEEEEECH
T ss_pred             HHcCCeEEEEEeCC
Confidence            99999999887654

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.48  E-value=1.4e-13  Score=123.74  Aligned_cols=145  Identities=19%  Similarity=0.294  Sum_probs=104.8

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C-Ce---------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P-CM---------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-gv---------------  235 (333)
                      ..++..++ ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++.      + ++               
T Consensus        62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD  139 (302)
T 3hem_A           62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVD  139 (302)
T ss_dssp             HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCS
T ss_pred             HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCcc
Confidence            45566665 67788999999999999999999987 79999999 8888776542      1 11               


Q ss_pred             -----EEEccCCh-------hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccc-----ccccchhhHHHhhCCCCC
Q 035738          236 -----WILHDWND-------EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIES-----KSNSDSDVLMMIQSPGGK  298 (333)
Q Consensus       236 -----~vLh~~~~-------~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~-----~~~~~~d~~m~~~~~~g~  298 (333)
                           .++|++++       +....+|++++++|+|||++++.+...++........     ....+.++.....++++.
T Consensus       140 ~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  219 (302)
T 3hem_A          140 RIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGR  219 (302)
T ss_dssp             EEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCC
T ss_pred             EEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCC
Confidence                 56777744       4567999999999999999999998766431100000     000011222222346778


Q ss_pred             cCCHHHHHHHHHhCCCCeeEEeecCCc
Q 035738          299 ERTRHEFMTLATGAGFSGISCERAIGN  325 (333)
Q Consensus       299 ~rt~~e~~~ll~~aGf~~~~~~~~~~~  325 (333)
                      .++.+++.++++++||+++++...+.+
T Consensus       220 ~~s~~~~~~~l~~aGf~~~~~~~~~~~  246 (302)
T 3hem_A          220 LPRISQVDYYSSNAGWKVERYHRIGAN  246 (302)
T ss_dssp             CCCHHHHHHHHHHHTCEEEEEEECGGG
T ss_pred             CCCHHHHHHHHHhCCcEEEEEEeCchh
Confidence            899999999999999999998876543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.47  E-value=3.4e-13  Score=120.18  Aligned_cols=143  Identities=16%  Similarity=0.184  Sum_probs=101.5

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe---------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM---------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv---------------  235 (333)
                      ..+++.++ ..+..+|||||||+|.++..+++.++. +++++|+ +.+++.+++.       +++               
T Consensus        54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD  131 (287)
T 1kpg_A           54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVD  131 (287)
T ss_dssp             HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCS
T ss_pred             HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCee
Confidence            34556555 667889999999999999999977754 9999999 7887766431       111               


Q ss_pred             -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCC-----CccccccccchhhHHHhhCCCCCcCCHHHH
Q 035738          236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPN-----TSIESKSNSDSDVLMMIQSPGGKERTRHEF  305 (333)
Q Consensus       236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~-----~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~  305 (333)
                           .++|++++++...+|++++++|+|||++++.+...+....     .+.........+.......+++..++.++|
T Consensus       132 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  211 (287)
T 1kpg_A          132 RIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMV  211 (287)
T ss_dssp             EEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHH
T ss_pred             EEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHH
Confidence                 6677887666679999999999999999999987654211     000000001111111122356778899999


Q ss_pred             HHHHHhCCCCeeEEeecC
Q 035738          306 MTLATGAGFSGISCERAI  323 (333)
Q Consensus       306 ~~ll~~aGf~~~~~~~~~  323 (333)
                      .++++++||+++++...+
T Consensus       212 ~~~l~~aGf~~~~~~~~~  229 (287)
T 1kpg_A          212 QECASANGFTVTRVQSLQ  229 (287)
T ss_dssp             HHHHHTTTCEEEEEEECH
T ss_pred             HHHHHhCCcEEEEEEeCc
Confidence            999999999999987653

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.47  E-value=8.4e-14  Score=122.32  Aligned_cols=135  Identities=13%  Similarity=0.231  Sum_probs=97.8

Q ss_pred             hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe--------------
Q 035738          177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM--------------  235 (333)
Q Consensus       177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv--------------  235 (333)
                      ....+++.++ .....+|||||||+|.++..+++..+  +++++|+ +.+++.+++.      +++              
T Consensus        25 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~  101 (260)
T 1vl5_A           25 DLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD  101 (260)
T ss_dssp             CHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred             HHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC
Confidence            3445666665 66788999999999999999999875  8999999 7887765431      111              


Q ss_pred             ---------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHH-HhhCCCCCcCCHHHH
Q 035738          236 ---------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLM-MIQSPGGKERTRHEF  305 (333)
Q Consensus       236 ---------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m-~~~~~~g~~rt~~e~  305 (333)
                               .++|++++..  .+|++++++|+|||++++.+...+..+.      ...+..... .........++.++|
T Consensus       102 ~~fD~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  173 (260)
T 1vl5_A          102 ERFHIVTCRIAAHHFPNPA--SFVSEAYRVLKKGGQLLLVDNSAPENDA------FDVFYNYVEKERDYSHHRAWKKSDW  173 (260)
T ss_dssp             TCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEBCSSHH------HHHHHHHHHHHHCTTCCCCCBHHHH
T ss_pred             CCEEEEEEhhhhHhcCCHH--HHHHHHHHHcCCCCEEEEEEcCCCCCHH------HHHHHHHHHHhcCccccCCCCHHHH
Confidence                     5788888765  8999999999999999999987664311      111111111 111113456789999


Q ss_pred             HHHHHhCCCCeeEEeec
Q 035738          306 MTLATGAGFSGISCERA  322 (333)
Q Consensus       306 ~~ll~~aGf~~~~~~~~  322 (333)
                      .++|+++||+++++...
T Consensus       174 ~~~l~~aGf~~~~~~~~  190 (260)
T 1vl5_A          174 LKMLEEAGFELEELHCF  190 (260)
T ss_dssp             HHHHHHHTCEEEEEEEE
T ss_pred             HHHHHHCCCeEEEEEEe
Confidence            99999999998877654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.45  E-value=9.3e-14  Score=121.37  Aligned_cols=129  Identities=19%  Similarity=0.256  Sum_probs=96.5

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CCe------------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PCM------------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~gv------------------  235 (333)
                      ..++..++ ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++.    +++                  
T Consensus        83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD  160 (254)
T 1xtp_A           83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD  160 (254)
T ss_dssp             HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred             HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence            44555554 5678899999999999999999886 557999998 7887766431    111                  


Q ss_pred             -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHH
Q 035738          236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLAT  310 (333)
Q Consensus       236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~  310 (333)
                           .+||++++++..++|++++++|+|||++++.+.......         ...+.     ......++.++|.++|+
T Consensus       161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~~~~~-----~~~~~~~~~~~~~~~l~  226 (254)
T 1xtp_A          161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR---------FLVDK-----EDSSLTRSDIHYKRLFN  226 (254)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC---------EEEET-----TTTEEEBCHHHHHHHHH
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc---------ceecc-----cCCcccCCHHHHHHHHH
Confidence                 778888887788999999999999999999997544321         01110     01233568999999999


Q ss_pred             hCCCCeeEEeecC
Q 035738          311 GAGFSGISCERAI  323 (333)
Q Consensus       311 ~aGf~~~~~~~~~  323 (333)
                      ++||+++++....
T Consensus       227 ~aGf~~~~~~~~~  239 (254)
T 1xtp_A          227 ESGVRVVKEAFQE  239 (254)
T ss_dssp             HHTCCEEEEEECT
T ss_pred             HCCCEEEEeeecC
Confidence            9999999987654

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.43  E-value=4.5e-13  Score=118.37  Aligned_cols=137  Identities=13%  Similarity=0.122  Sum_probs=99.3

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C-Ce--------------
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P-CM--------------  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-gv--------------  235 (333)
                      ...+++.++ .....+|||||||+|.++..+++.+ ..+++++|+ +.+++.+++.      + ++              
T Consensus        50 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  127 (273)
T 3bus_A           50 TDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED  127 (273)
T ss_dssp             HHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence            345666665 6778899999999999999999987 679999999 7777665421      0 01              


Q ss_pred             ---------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHH
Q 035738          236 ---------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFM  306 (333)
Q Consensus       236 ---------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~  306 (333)
                               .++|++++.  .++|++++++|+|||++++.+..........    .....+..... .+.+..++.++|.
T Consensus       128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~  200 (273)
T 3bus_A          128 ASFDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVEGA----KKEAVDAFRAG-GGVLSLGGIDEYE  200 (273)
T ss_dssp             TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCCHH----HHHHHHHHHHH-HTCCCCCCHHHHH
T ss_pred             CCccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCChh----HHHHHHHHHhh-cCccCCCCHHHHH
Confidence                     556777665  4899999999999999999998765432110    00111111111 1356778999999


Q ss_pred             HHHHhCCCCeeEEeecC
Q 035738          307 TLATGAGFSGISCERAI  323 (333)
Q Consensus       307 ~ll~~aGf~~~~~~~~~  323 (333)
                      ++++++||+++++...+
T Consensus       201 ~~l~~aGf~~~~~~~~~  217 (273)
T 3bus_A          201 SDVRQAELVVTSTVDIS  217 (273)
T ss_dssp             HHHHHTTCEEEEEEECH
T ss_pred             HHHHHcCCeEEEEEECc
Confidence            99999999999887654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.43  E-value=9.3e-13  Score=119.16  Aligned_cols=144  Identities=15%  Similarity=0.235  Sum_probs=102.3

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe--------------
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM--------------  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv--------------  235 (333)
                      ...+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++.       ..+              
T Consensus        79 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f  156 (318)
T 2fk8_A           79 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV  156 (318)
T ss_dssp             HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred             HHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCc
Confidence            345566565 6678899999999999999999987 569999999 7887766532       111              


Q ss_pred             ------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccc-c----cccchhhHHHhhCCCCCcCCHHH
Q 035738          236 ------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIES-K----SNSDSDVLMMIQSPGGKERTRHE  304 (333)
Q Consensus       236 ------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~-~----~~~~~d~~m~~~~~~g~~rt~~e  304 (333)
                            .++|++++++..++|+++.++|+|||++++.++..+......... .    .....+.......+++..++.++
T Consensus       157 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  236 (318)
T 2fk8_A          157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEM  236 (318)
T ss_dssp             SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred             CEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHH
Confidence                  667778767778999999999999999999999765421000000 0    00011111112235677889999


Q ss_pred             HHHHHHhCCCCeeEEeecC
Q 035738          305 FMTLATGAGFSGISCERAI  323 (333)
Q Consensus       305 ~~~ll~~aGf~~~~~~~~~  323 (333)
                      |.++++++||+++++...+
T Consensus       237 ~~~~l~~aGf~~~~~~~~~  255 (318)
T 2fk8_A          237 MVEHGEKAGFTVPEPLSLR  255 (318)
T ss_dssp             HHHHHHHTTCBCCCCEECH
T ss_pred             HHHHHHhCCCEEEEEEecc
Confidence            9999999999999877653

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.43  E-value=3.4e-12  Score=118.15  Aligned_cols=198  Identities=11%  Similarity=0.013  Sum_probs=121.0

Q ss_pred             ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccccCCCCCChh
Q 035738           36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLG  115 (333)
Q Consensus        36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~  115 (333)
                      ++|..| .    +|.|+.|||+++|+    +++.+++||++|.+.|+++..      ++ |++|+.+..++...+..+..
T Consensus        47 ~ll~~L-~----~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~~------~~-~~lt~~~~~~l~~~~~~~~~  110 (373)
T 2qm3_A           47 NVLSAV-L----ASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTFE------DG-VKLTEKGEELVAEYGIGKRY  110 (373)
T ss_dssp             HHHHHH-H----HCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECS------SS-SEECHHHHHHHHHHTCCCCC
T ss_pred             HHHHHh-c----CCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEEC------CC-EEECHHHHHHHHhcCccccc
Confidence            779999 5    38999999999999    999999999999999999874      34 99998876554332111111


Q ss_pred             hhHh-hcc-----ChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHHHHHHHhhhhhhhHHHHHhhccCCC
Q 035738          116 PGIQ-ITH-----DKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFD  189 (333)
Q Consensus       116 ~~~~-~~~-----~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~  189 (333)
                      +.+. ...     ...+...|..+.+.++....+. .     .++.....++.  ......         .... .. ..
T Consensus       111 ~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~-~-----~~~~~~~~~~~--~~~~~l---------~~~~-~~-~~  171 (373)
T 2qm3_A          111 DFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEPL-H-----EFDQAYVTPET--TVARVI---------LMHT-RG-DL  171 (373)
T ss_dssp             C------------CGGGHHHHHHHHHHHTTCCCCC-G-----GGTCCCBCHHH--HHHHHH---------HHHH-TT-CS
T ss_pred             cccchhhcCCCcchhhhHHHHHHHHHHHhcCCccc-h-----hcCCeecCHHH--HHHHHH---------HHhh-cC-CC
Confidence            1110 000     0111223445555555432110 0     11100001111  111100         0011 11 22


Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe--------------------EEEcc--
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM--------------------WILHD--  240 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv--------------------~vLh~--  240 (333)
                      .+.+||||| |+|.++..++...|+.+++++|+ +.+++.++++      .++                    .|+.+  
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p  250 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP  250 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence            468999999 99999999999998889999999 8888876543      012                    22222  


Q ss_pred             CChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          241 WNDEHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                      +.......+|+++.++|+|||++++++..
T Consensus       251 ~~~~~~~~~l~~~~~~LkpgG~~~~~~~~  279 (373)
T 2qm3_A          251 ETLEAIRAFVGRGIATLKGPRCAGYFGIT  279 (373)
T ss_dssp             SSHHHHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred             CchHHHHHHHHHHHHHcccCCeEEEEEEe
Confidence            11123468999999999999987777764

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.42  E-value=2e-13  Score=120.17  Aligned_cols=143  Identities=15%  Similarity=0.179  Sum_probs=94.9

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CC------------------e----E-EEccCCh
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PC------------------M----W-ILHDWND  243 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~g------------------v----~-vLh~~~~  243 (333)
                      .+..+|||||||+|.++..+++..+  +++++|+ +.+++.+++. ++                  +    . ++|++++
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~  126 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG  126 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence            3568999999999999999998854  7999999 8888776542 11                  1    2 6677754


Q ss_pred             -hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccc------------c--------cccchhhHHHhhCCC------
Q 035738          244 -EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIES------------K--------SNSDSDVLMMIQSPG------  296 (333)
Q Consensus       244 -~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~------------~--------~~~~~d~~m~~~~~~------  296 (333)
                       ++..++|++++++|+|||+++|.+...++.-......            .        ....+++.+.....+      
T Consensus       127 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (263)
T 3pfg_A          127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHH  206 (263)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEE
Confidence             5667999999999999999999765444321110000            0        000111111110011      


Q ss_pred             -----CCcCCHHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738          297 -----GKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       297 -----g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  333 (333)
                           .+.++.++|.++|+++||+++++........++.++|
T Consensus       207 ~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K  248 (263)
T 3pfg_A          207 EESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP  248 (263)
T ss_dssp             EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred             EEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence                 2346899999999999999999877666666665553

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.42  E-value=3.7e-13  Score=116.79  Aligned_cols=133  Identities=16%  Similarity=0.292  Sum_probs=96.2

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe----------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM----------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv----------------  235 (333)
                      ..+++.+. ..+..+|||||||+|.++..+++..+  +++++|+ +.+++.+++.      +++                
T Consensus        11 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~   87 (239)
T 1xxl_A           11 GLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS   87 (239)
T ss_dssp             HHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred             chHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence            44555565 77889999999999999999998875  7999999 7787765421      111                


Q ss_pred             -------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhH-HHhhCCCCCcCCHHHHHH
Q 035738          236 -------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVL-MMIQSPGGKERTRHEFMT  307 (333)
Q Consensus       236 -------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~-m~~~~~~g~~rt~~e~~~  307 (333)
                             .++|++++..  .+|++++++|+|||++++.+...+...   .   ...+.... ..........++.++|.+
T Consensus        88 fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (239)
T 1xxl_A           88 FDIITCRYAAHHFSDVR--KAVREVARVLKQDGRFLLVDHYAPEDP---V---LDEFVNHLNRLRDPSHVRESSLSEWQA  159 (239)
T ss_dssp             EEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECBCSSH---H---HHHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred             EEEEEECCchhhccCHH--HHHHHHHHHcCCCcEEEEEEcCCCCCh---h---HHHHHHHHHHhccccccCCCCHHHHHH
Confidence                   5778888654  899999999999999999998765431   1   11111111 111111345678999999


Q ss_pred             HHHhCCCCeeEEeec
Q 035738          308 LATGAGFSGISCERA  322 (333)
Q Consensus       308 ll~~aGf~~~~~~~~  322 (333)
                      +|+++||+++++...
T Consensus       160 ll~~aGf~~~~~~~~  174 (239)
T 1xxl_A          160 MFSANQLAYQDIQKW  174 (239)
T ss_dssp             HHHHTTEEEEEEEEE
T ss_pred             HHHHCCCcEEEEEee
Confidence            999999998887654

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.41  E-value=8.6e-13  Score=118.13  Aligned_cols=134  Identities=15%  Similarity=0.155  Sum_probs=96.3

Q ss_pred             HHHHhhc---cCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--------------------C-
Q 035738          179 SNILESY---KGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--------------------P-  233 (333)
Q Consensus       179 ~~~~~~~---~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------------~-  233 (333)
                      ..+++.+   ....+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++.                    + 
T Consensus        68 ~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  146 (297)
T 2o57_A           68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC  146 (297)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred             HHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC
Confidence            4455555   126778899999999999999999986 469999999 7777655421                    0 


Q ss_pred             --C----e---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHH
Q 035738          234 --C----M---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHE  304 (333)
Q Consensus       234 --g----v---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e  304 (333)
                        +    |   .++|++++.  ..+|++++++|+|||++++.++..++.....      ....+....  ......+.++
T Consensus       147 ~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~~~~~  216 (297)
T 2o57_A          147 EDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDKS------SIQPILDRI--KLHDMGSLGL  216 (297)
T ss_dssp             CTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTCCGG------GGHHHHHHH--TCSSCCCHHH
T ss_pred             CCCCEeEEEecchhhhcCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCchH------HHHHHHHHh--cCCCCCCHHH
Confidence              1    1   567888774  5999999999999999999999876532211      111111111  1233568999


Q ss_pred             HHHHHHhCCCCeeEEeecC
Q 035738          305 FMTLATGAGFSGISCERAI  323 (333)
Q Consensus       305 ~~~ll~~aGf~~~~~~~~~  323 (333)
                      |.++|+++||+++++....
T Consensus       217 ~~~~l~~aGf~~~~~~~~~  235 (297)
T 2o57_A          217 YRSLAKECGLVTLRTFSRP  235 (297)
T ss_dssp             HHHHHHHTTEEEEEEEECH
T ss_pred             HHHHHHHCCCeEEEEEECc
Confidence            9999999999999887643

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.41  E-value=1.4e-12  Score=117.81  Aligned_cols=143  Identities=8%  Similarity=0.017  Sum_probs=101.8

Q ss_pred             HhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe------
Q 035738          170 MYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM------  235 (333)
Q Consensus       170 m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv------  235 (333)
                      +..........+++.++...+..+|||||||+|.++..+++++ ..+++++|+ +.+++.++++       .++      
T Consensus        97 ~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  175 (312)
T 3vc1_A           97 LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN  175 (312)
T ss_dssp             HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence            4444444455666666546678899999999999999999986 578999999 8888766531       011      


Q ss_pred             -----------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCC
Q 035738          236 -----------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGK  298 (333)
Q Consensus       236 -----------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~  298 (333)
                                       .++|+++   ..++|++++++|+|||++++.+....+.....     ...........  ...
T Consensus       176 ~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~  245 (312)
T 3vc1_A          176 MLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQP-----SKWVSQINAHF--ECN  245 (312)
T ss_dssp             TTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSC-----CHHHHHHHHHH--TCC
T ss_pred             hhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccch-----hHHHHHHHhhh--cCC
Confidence                             5567774   45899999999999999999998776532111     11222221111  123


Q ss_pred             cCCHHHHHHHHHhCCCCeeEEeecC
Q 035738          299 ERTRHEFMTLATGAGFSGISCERAI  323 (333)
Q Consensus       299 ~rt~~e~~~ll~~aGf~~~~~~~~~  323 (333)
                      .++.++|.++|+++||+++++...+
T Consensus       246 ~~s~~~~~~~l~~aGf~~~~~~~~~  270 (312)
T 3vc1_A          246 IHSRREYLRAMADNRLVPHTIVDLT  270 (312)
T ss_dssp             CCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred             CCCHHHHHHHHHHCCCEEEEEEeCC
Confidence            6789999999999999999887653

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.41  E-value=2e-13  Score=120.99  Aligned_cols=133  Identities=17%  Similarity=0.244  Sum_probs=94.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------------EE
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------------WI  237 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------------~v  237 (333)
                      +.+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++.      +++                       .+
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  114 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV  114 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence            56788999999999999999999999999999999 7887766431      111                       66


Q ss_pred             EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHH-HhhCCCCCcCCHHHHHHHHHhCCCCe
Q 035738          238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLM-MIQSPGGKERTRHEFMTLATGAGFSG  316 (333)
Q Consensus       238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m-~~~~~~g~~rt~~e~~~ll~~aGf~~  316 (333)
                      +|++++..  .+|++++++|+|||++++.+.........+............. .....++..++..+|.++|+++||++
T Consensus       115 l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~  192 (276)
T 3mgg_A          115 LEHLQSPE--EALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEK  192 (276)
T ss_dssp             GGGCSCHH--HHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEE
T ss_pred             hhhcCCHH--HHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCe
Confidence            77887765  8999999999999999999975422100000000111111111 11113566677889999999999999


Q ss_pred             eEEeec
Q 035738          317 ISCERA  322 (333)
Q Consensus       317 ~~~~~~  322 (333)
                      +++...
T Consensus       193 v~~~~~  198 (276)
T 3mgg_A          193 IRVEPR  198 (276)
T ss_dssp             EEEEEE
T ss_pred             EEEeeE
Confidence            988754

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.40  E-value=1.9e-13  Score=112.08  Aligned_cols=126  Identities=14%  Similarity=0.157  Sum_probs=94.7

Q ss_pred             hhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CC----------------e----EEEcc
Q 035738          183 ESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PC----------------M----WILHD  240 (333)
Q Consensus       183 ~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~g----------------v----~vLh~  240 (333)
                      +.++ ..+..+|||||||+|.++..+++...  +++++|+ +.+++.+++. ++                +    .++|+
T Consensus        11 ~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d~~~~~~~~D~v~~~~~l~~   87 (170)
T 3i9f_A           11 PNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDPKEIPDNSVDFILFANSFHD   87 (170)
T ss_dssp             HHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSGGGSCTTCEEEEEEESCSTT
T ss_pred             HhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCCCCCCCCceEEEEEccchhc
Confidence            3344 66778999999999999999999884  8999999 7787766432 11                1    66777


Q ss_pred             CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEe
Q 035738          241 WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCE  320 (333)
Q Consensus       241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~  320 (333)
                      +++..  .+|+++++.|+|||++++.+.........+                 +....++.++|.++|+  ||+++++.
T Consensus        88 ~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~--Gf~~~~~~  146 (170)
T 3i9f_A           88 MDDKQ--HVISEVKRILKDDGRVIIIDWRKENTGIGP-----------------PLSIRMDEKDYMGWFS--NFVVEKRF  146 (170)
T ss_dssp             CSCHH--HHHHHHHHHEEEEEEEEEEEECSSCCSSSS-----------------CGGGCCCHHHHHHHTT--TEEEEEEE
T ss_pred             ccCHH--HHHHHHHHhcCCCCEEEEEEcCccccccCc-----------------hHhhhcCHHHHHHHHh--CcEEEEcc
Confidence            76554  899999999999999999998655432110                 0112358999999999  99999999


Q ss_pred             ecCCceeEEEEe
Q 035738          321 RAIGNLWVMEFY  332 (333)
Q Consensus       321 ~~~~~~~vie~~  332 (333)
                      ....+...+.+.
T Consensus       147 ~~~~~~~~l~~~  158 (170)
T 3i9f_A          147 NPTPYHFGLVLK  158 (170)
T ss_dssp             CSSTTEEEEEEE
T ss_pred             CCCCceEEEEEe
Confidence            988665555443

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.40  E-value=2.1e-12  Score=113.56  Aligned_cols=131  Identities=11%  Similarity=0.084  Sum_probs=93.7

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCCCe----------------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHPCM----------------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~gv----------------------  235 (333)
                      ..+.+.++ ..+..+|||||||+|.++..+++  |..+++++|+ +.+++.+++.+++                      
T Consensus        24 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~  100 (261)
T 3ege_A           24 NAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVIS  100 (261)
T ss_dssp             HHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEE
T ss_pred             HHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEE
Confidence            34555555 66788999999999999999997  7789999999 8899887764221                      


Q ss_pred             -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCC
Q 035738          236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGF  314 (333)
Q Consensus       236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf  314 (333)
                       .++|++++..  ++|++++++|+ ||++++.+...+.... .+..   ..+..... . .....++.+++. +|+++||
T Consensus       101 ~~~l~~~~~~~--~~l~~~~~~Lk-gG~~~~~~~~~~~~~~-~~~~---~~~~~~~~-~-~~~~~~~~~~~~-~l~~aGF  170 (261)
T 3ege_A          101 ILAIHHFSHLE--KSFQEMQRIIR-DGTIVLLTFDIRLAQR-IWLY---DYFPFLWE-D-ALRFLPLDEQIN-LLQENTK  170 (261)
T ss_dssp             ESCGGGCSSHH--HHHHHHHHHBC-SSCEEEEEECGGGCCC-CGGG---GTCHHHHH-H-HHTSCCHHHHHH-HHHHHHC
T ss_pred             cchHhhccCHH--HHHHHHHHHhC-CcEEEEEEcCCchhHH-HHHH---HHHHHHhh-h-hhhhCCCHHHHH-HHHHcCC
Confidence             6677886654  89999999999 9999999985543211 1110   11111111 1 123455678899 9999999


Q ss_pred             CeeEEeec
Q 035738          315 SGISCERA  322 (333)
Q Consensus       315 ~~~~~~~~  322 (333)
                      +.+++...
T Consensus       171 ~~v~~~~~  178 (261)
T 3ege_A          171 RRVEAIPF  178 (261)
T ss_dssp             SEEEEEEC
T ss_pred             CceeEEEe
Confidence            99988765

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.40  E-value=5.6e-13  Score=116.57  Aligned_cols=132  Identities=13%  Similarity=0.078  Sum_probs=94.6

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe---------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM---------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv---------------  235 (333)
                      ..++..+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++.       .++               
T Consensus        26 ~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  103 (256)
T 1nkv_A           26 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK  103 (256)
T ss_dssp             HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred             HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCC
Confidence            34555555 6778899999999999999999988 678999999 8887766431       011               


Q ss_pred             -------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHH
Q 035738          236 -------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTL  308 (333)
Q Consensus       236 -------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~l  308 (333)
                             .++|++++.  .++|++++++|+|||++++.++.........      ........  ......++.++|.++
T Consensus       104 fD~V~~~~~~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~~~~~~~~~~  173 (256)
T 1nkv_A          104 CDVAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPATE------EIAQACGV--SSTSDFLTLPGLVGA  173 (256)
T ss_dssp             EEEEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSSH------HHHHTTTC--SCGGGSCCHHHHHHH
T ss_pred             CCEEEECCChHhcCCH--HHHHHHHHHHcCCCeEEEEecCcccCCCChH------HHHHHHhc--ccccccCCHHHHHHH
Confidence                   456677654  4899999999999999999998765432211      00000000  012245789999999


Q ss_pred             HHhCCCCeeEEeec
Q 035738          309 ATGAGFSGISCERA  322 (333)
Q Consensus       309 l~~aGf~~~~~~~~  322 (333)
                      |+++||+.+++...
T Consensus       174 l~~aGf~~~~~~~~  187 (256)
T 1nkv_A          174 FDDLGYDVVEMVLA  187 (256)
T ss_dssp             HHTTTBCCCEEEEC
T ss_pred             HHHCCCeeEEEEeC
Confidence            99999999887543

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.39  E-value=7.4e-13  Score=112.46  Aligned_cols=118  Identities=12%  Similarity=0.070  Sum_probs=89.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------------C--C---e----EEEccCChh
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------------P--C---M----WILHDWNDE  244 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~--g---v----~vLh~~~~~  244 (333)
                      +.+..+|||||||+|.++..+++.  ..+++++|+ +.+++.+++.             +  +   +    .+||+++++
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~  118 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD  118 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence            446789999999999999999987  568999999 7787766542             1  1   1    678888877


Q ss_pred             HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCC-CCeeEEeec
Q 035738          245 HCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAG-FSGISCERA  322 (333)
Q Consensus       245 ~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aG-f~~~~~~~~  322 (333)
                      +...+|++++++|+|||++++.........    ..    ...       .....++.++|.++|+++| |+++++...
T Consensus       119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~----~~----~~~-------~~~~~~~~~~~~~~l~~aG~f~~~~~~~~  182 (211)
T 3e23_A          119 ELADVLKLIWRALKPGGLFYASYKSGEGEG----RD----KLA-------RYYNYPSEEWLRARYAEAGTWASVAVESS  182 (211)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEECCSSCE----EC----TTS-------CEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEEcCCCccc----cc----ccc-------hhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence            888999999999999999999865433210    00    000       0123468999999999999 999988754

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.39  E-value=2.2e-13  Score=117.84  Aligned_cols=143  Identities=17%  Similarity=0.192  Sum_probs=95.4

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CC----------------e-------EEEccCC-
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PC----------------M-------WILHDWN-  242 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~g----------------v-------~vLh~~~-  242 (333)
                      .+..+|||||||+|.++..+++.++  +++++|+ +.+++.+++. ++                .       .++|+++ 
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~  116 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT  116 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence            4568999999999999999999876  7999999 8888766532 11                1       2455554 


Q ss_pred             hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccc--------------------cccchhhHHHhhCCCC-----
Q 035738          243 DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESK--------------------SNSDSDVLMMIQSPGG-----  297 (333)
Q Consensus       243 ~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~--------------------~~~~~d~~m~~~~~~g-----  297 (333)
                      +++..++|++++++|+|||++++.+...++.........                    ......+.++....++     
T Consensus       117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (239)
T 3bxo_A          117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF  196 (239)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence            356779999999999999999998766554321100000                    0000111111100111     


Q ss_pred             ------CcCCHHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738          298 ------KERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       298 ------~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  333 (333)
                            +.++.++|.++|+++||+++.+....+...++.++|
T Consensus       197 ~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K  238 (239)
T 3bxo_A          197 SDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP  238 (239)
T ss_dssp             EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred             EEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence                  346899999999999997777666556677777764

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.38  E-value=4.9e-13  Score=112.84  Aligned_cols=123  Identities=13%  Similarity=0.065  Sum_probs=92.2

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CCe-----------------------EEEccCChhH
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PCM-----------------------WILHDWNDEH  245 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~gv-----------------------~vLh~~~~~~  245 (333)
                      ..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++. +++                       .++|++++++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~  119 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE  119 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence            679999999999999999987  458999999 7888776542 111                       6778888677


Q ss_pred             HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecC-C
Q 035738          246 CLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAI-G  324 (333)
Q Consensus       246 ~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~  324 (333)
                      ..++|++++++|+|||++++.+...+...      .    +.-.    ......++.++|.++|+++||+++++...+ .
T Consensus       120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~------~----~~~~----~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  185 (203)
T 3h2b_A          120 LPDALVALRMAVEDGGGLLMSFFSGPSLE------P----MYHP----VATAYRWPLPELAQALETAGFQVTSSHWDPRF  185 (203)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEEECCSSCE------E----ECCS----SSCEEECCHHHHHHHHHHTTEEEEEEEECTTS
T ss_pred             HHHHHHHHHHHcCCCcEEEEEEccCCchh------h----hhch----hhhhccCCHHHHHHHHHHCCCcEEEEEecCCC
Confidence            78999999999999999999987544310      0    0000    012345689999999999999999988765 3


Q ss_pred             ceeEE
Q 035738          325 NLWVM  329 (333)
Q Consensus       325 ~~~vi  329 (333)
                      ++..+
T Consensus       186 p~~~l  190 (203)
T 3h2b_A          186 PHAYL  190 (203)
T ss_dssp             SEEEE
T ss_pred             cchhh
Confidence            34443

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.38  E-value=1.2e-12  Score=114.63  Aligned_cols=131  Identities=12%  Similarity=0.062  Sum_probs=94.5

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC-e----------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC-M----------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g-v----------------  235 (333)
                      .++..+....+..+|||||||+|..+..+++.++. +++++|+ +.+++.+++.      ++ +                
T Consensus        36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  114 (257)
T 3f4k_A           36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEE  114 (257)
T ss_dssp             HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTC
T ss_pred             HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCC
Confidence            34454543667789999999999999999999986 9999999 7787765431      00 1                


Q ss_pred             -------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHH
Q 035738          236 -------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTL  308 (333)
Q Consensus       236 -------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~l  308 (333)
                             .++|+++   ..++|++++++|+|||++++.++.........      .........   ....++.++|.++
T Consensus       115 fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~  182 (257)
T 3f4k_A          115 LDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPA------EIEDFWMDA---YPEISVIPTCIDK  182 (257)
T ss_dssp             EEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCCBHHHHHHH
T ss_pred             EEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChH------HHHHHHHHh---CCCCCCHHHHHHH
Confidence                   4466663   34799999999999999999998654432111      111222211   2336689999999


Q ss_pred             HHhCCCCeeEEeecC
Q 035738          309 ATGAGFSGISCERAI  323 (333)
Q Consensus       309 l~~aGf~~~~~~~~~  323 (333)
                      |+++||+++++...+
T Consensus       183 l~~aGf~~v~~~~~~  197 (257)
T 3f4k_A          183 MERAGYTPTAHFILP  197 (257)
T ss_dssp             HHHTTEEEEEEEECC
T ss_pred             HHHCCCeEEEEEECC
Confidence            999999999987664

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.37  E-value=4.3e-13  Score=120.35  Aligned_cols=152  Identities=9%  Similarity=0.064  Sum_probs=98.5

Q ss_pred             hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---------CCe-----------
Q 035738          177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---------PCM-----------  235 (333)
Q Consensus       177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~gv-----------  235 (333)
                      ....+++.++ . ...+|||||||+|.++..+++.  ..+++++|+ +.+++.+++.         .++           
T Consensus        71 ~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  146 (299)
T 3g2m_A           71 EAREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA  146 (299)
T ss_dssp             HHHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred             HHHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence            3445555554 3 3349999999999999999987  468999999 8888776531         011           


Q ss_pred             ------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccc--cccc-----------------c
Q 035738          236 ------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIE--SKSN-----------------S  284 (333)
Q Consensus       236 ------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~--~~~~-----------------~  284 (333)
                                  .++|.+++++..++|++++++|+|||+|++..+..+........  ..+.                 .
T Consensus       147 ~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  226 (299)
T 3g2m_A          147 LDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEE  226 (299)
T ss_dssp             CSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEE
T ss_pred             cCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecccc
Confidence                        33566777778899999999999999999988755421000000  0000                 0


Q ss_pred             chhhHHHh----------hCCCCCcCCHHHHHHHHHhCCCCeeEEeecC------CceeEEEEe
Q 035738          285 DSDVLMMI----------QSPGGKERTRHEFMTLATGAGFSGISCERAI------GNLWVMEFY  332 (333)
Q Consensus       285 ~~d~~m~~----------~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~------~~~~vie~~  332 (333)
                      ...+.+..          .....+.++.++|.++|+++||+++++.+..      ....++|+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~  290 (299)
T 3g2m_A          227 IQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV  290 (299)
T ss_dssp             EEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred             EEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence            00000000          0001124699999999999999999998875      224567664

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.37  E-value=4.9e-13  Score=116.11  Aligned_cols=118  Identities=19%  Similarity=0.259  Sum_probs=91.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---------------------C-C-e------EEEc
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---------------------P-C-M------WILH  239 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~-g-v------~vLh  239 (333)
                      +..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++.                     + + .      .++|
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  157 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  157 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence            57899999999999999998877 568999999 7887765432                     0 0 0      6688


Q ss_pred             cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEE
Q 035738          240 DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISC  319 (333)
Q Consensus       240 ~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~  319 (333)
                      +++++...++|++++++|+|||++++.++..+..   .       .++.     ......++.++|.++|+++||+++++
T Consensus       158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~-------~~~~-----~~~~~~~~~~~~~~~l~~aGf~~~~~  222 (241)
T 2ex4_A          158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG---V-------ILDD-----VDSSVCRDLDVVRRIICSAGLSLLAE  222 (241)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS---E-------EEET-----TTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred             hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc---c-------eecc-----cCCcccCCHHHHHHHHHHcCCeEEEe
Confidence            8888877899999999999999999999876541   0       0110     01233458999999999999999998


Q ss_pred             eecC
Q 035738          320 ERAI  323 (333)
Q Consensus       320 ~~~~  323 (333)
                      ....
T Consensus       223 ~~~~  226 (241)
T 2ex4_A          223 ERQE  226 (241)
T ss_dssp             EECC
T ss_pred             eecC
Confidence            7654

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.36  E-value=1.3e-12  Score=111.76  Aligned_cols=133  Identities=17%  Similarity=0.157  Sum_probs=89.6

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCCC---------------------e--
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHPC---------------------M--  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~g---------------------v--  235 (333)
                      .++..+. .....+|||||||+|.++..+++.  ..+++++|+ +.+++.+++...                     .  
T Consensus        43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  119 (227)
T 3e8s_A           43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL  119 (227)
T ss_dssp             HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred             HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence            3444444 445689999999999999999988  568999999 788877654311                     1  


Q ss_pred             ----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhC-----CCCCcCCHHHHH
Q 035738          236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQS-----PGGKERTRHEFM  306 (333)
Q Consensus       236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~-----~~g~~rt~~e~~  306 (333)
                          .++| ..+.  ..+|++++++|+|||++++.++...........   ..+.........     .....++.++|.
T Consensus       120 v~~~~~l~-~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (227)
T 3e8s_A          120 ICANFALL-HQDI--IELLSAMRTLLVPGGALVIQTLHPWSVADGDYQ---DGWREESFAGFAGDWQPMPWYFRTLASWL  193 (227)
T ss_dssp             EEEESCCC-SSCC--HHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCS---CEEEEECCTTSSSCCCCEEEEECCHHHHH
T ss_pred             EEECchhh-hhhH--HHHHHHHHHHhCCCeEEEEEecCccccCccccc---cccchhhhhccccCcccceEEEecHHHHH
Confidence                4555 4444  489999999999999999998865443221100   011110000000     011346899999


Q ss_pred             HHHHhCCCCeeEEee
Q 035738          307 TLATGAGFSGISCER  321 (333)
Q Consensus       307 ~ll~~aGf~~~~~~~  321 (333)
                      ++|+++||+++++..
T Consensus       194 ~~l~~aGf~~~~~~~  208 (227)
T 3e8s_A          194 NALDMAGLRLVSLQE  208 (227)
T ss_dssp             HHHHHTTEEEEEEEC
T ss_pred             HHHHHcCCeEEEEec
Confidence            999999999999875

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.36  E-value=3.3e-12  Score=110.58  Aligned_cols=139  Identities=12%  Similarity=0.070  Sum_probs=89.8

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CCe--------------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PCM--------------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~gv--------------------  235 (333)
                      .+...++ ..+..+|||||||+|.++..+++... .+++++|+ +.+++.+++.   .++                    
T Consensus        34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v  111 (243)
T 3bkw_A           34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA  111 (243)
T ss_dssp             HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred             HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence            4445454 55678999999999999999988733 38999999 7887766532   111                    


Q ss_pred             ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC--CCCCcccc--------ccccch-----hhHHHhhCCCC
Q 035738          236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPE--VPNTSIES--------KSNSDS-----DVLMMIQSPGG  297 (333)
Q Consensus       236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~--~~~~~~~~--------~~~~~~-----d~~m~~~~~~g  297 (333)
                         .++|++++.  .++|++++++|+|||++++.++....  .....+..        .....+     ...........
T Consensus       112 ~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (243)
T 3bkw_A          112 YSSLALHYVEDV--ARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVK  189 (243)
T ss_dssp             EEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCE
T ss_pred             EEeccccccchH--HHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEE
Confidence               566777654  48999999999999999998753210  00000000        000000     00001100122


Q ss_pred             CcCCHHHHHHHHHhCCCCeeEEeec
Q 035738          298 KERTRHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       298 ~~rt~~e~~~ll~~aGf~~~~~~~~  322 (333)
                      ..++.++|.++|+++||+++++...
T Consensus       190 ~~~t~~~~~~~l~~aGF~~~~~~~~  214 (243)
T 3bkw_A          190 HHRTVGTTLNALIRSGFAIEHVEEF  214 (243)
T ss_dssp             EECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred             EeccHHHHHHHHHHcCCEeeeeccC
Confidence            3468999999999999999988754

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.35  E-value=1.3e-12  Score=115.27  Aligned_cols=131  Identities=12%  Similarity=0.040  Sum_probs=94.7

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe----------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM----------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv----------------  235 (333)
                      .++..+....+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++.       +.+                
T Consensus        36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  114 (267)
T 3kkz_A           36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE  114 (267)
T ss_dssp             HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred             HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence            34444443567889999999999999999998 8889999999 7877765432       111                


Q ss_pred             -------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHH
Q 035738          236 -------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTL  308 (333)
Q Consensus       236 -------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~l  308 (333)
                             .++|+++ .  .++|++++++|+|||++++.+..........      .........   ....++.+++.++
T Consensus       115 fD~i~~~~~~~~~~-~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~  182 (267)
T 3kkz_A          115 LDLIWSEGAIYNIG-F--ERGLNEWRKYLKKGGYLAVSECSWFTDERPA------EINDFWMDA---YPEIDTIPNQVAK  182 (267)
T ss_dssp             EEEEEESSCGGGTC-H--HHHHHHHGGGEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCEEHHHHHHH
T ss_pred             EEEEEEcCCceecC-H--HHHHHHHHHHcCCCCEEEEEEeeecCCCChH------HHHHHHHHh---CCCCCCHHHHHHH
Confidence                   4566663 3  4799999999999999999998755432211      111221111   2346689999999


Q ss_pred             HHhCCCCeeEEeecC
Q 035738          309 ATGAGFSGISCERAI  323 (333)
Q Consensus       309 l~~aGf~~~~~~~~~  323 (333)
                      ++++||+++++...+
T Consensus       183 l~~aGf~~v~~~~~~  197 (267)
T 3kkz_A          183 IHKAGYLPVATFILP  197 (267)
T ss_dssp             HHHTTEEEEEEEECC
T ss_pred             HHHCCCEEEEEEECC
Confidence            999999999987765

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.35  E-value=1.4e-12  Score=117.39  Aligned_cols=146  Identities=13%  Similarity=0.144  Sum_probs=97.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHH-HHCCCCeEEEeec-hhHhhhCCCC------CC-e----------------------E
Q 035738          188 FDNIKQLVDVGGGIGVTLQAIT-TKYPYIKGINFDL-PHVIEHVPPH------PC-M----------------------W  236 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~------~g-v----------------------~  236 (333)
                      ..+..+|||||||+|.++..++ ..+|+.+++++|+ +.+++.++++      .+ +                      .
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  195 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG  195 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence            5577899999999999999996 6789999999999 8888766532      00 1                      5


Q ss_pred             EEccCChh-HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcc--cc-cccc---c-hhhHHHhhCCC--CCcCCHHHHH
Q 035738          237 ILHDWNDE-HCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSI--ES-KSNS---D-SDVLMMIQSPG--GKERTRHEFM  306 (333)
Q Consensus       237 vLh~~~~~-~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~--~~-~~~~---~-~d~~m~~~~~~--g~~rt~~e~~  306 (333)
                      ++|+++++ ...++|++++++|+|||++++.+...+.......  .. ....   . ....+......  ...++.++|.
T Consensus       196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (305)
T 3ocj_A          196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR  275 (305)
T ss_dssp             SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence            56777544 4457999999999999999998876554322110  00 0000   0 00001111111  1347899999


Q ss_pred             HHHHhCCCCeeEEeecCCc-eeEEEEeC
Q 035738          307 TLATGAGFSGISCERAIGN-LWVMEFYK  333 (333)
Q Consensus       307 ~ll~~aGf~~~~~~~~~~~-~~vie~~~  333 (333)
                      ++|+++||+++++.....+ ...+.++|
T Consensus       276 ~~l~~aGF~~v~~~~~~~~~~~~v~a~K  303 (305)
T 3ocj_A          276 AQLEEAGFTDLRFEDDRARLFPTVIARK  303 (305)
T ss_dssp             HHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred             HHHHHCCCEEEEEEcccCceeeEEEEec
Confidence            9999999999999865433 33444443

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.35  E-value=1e-12  Score=117.13  Aligned_cols=140  Identities=16%  Similarity=0.156  Sum_probs=93.9

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC----C-Ce-----------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH----P-CM-----------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~----~-gv-----------------  235 (333)
                      .+++.+....+..+|||||||+|.++..+++.+|+ .+++++|+ +.+++.+++.    + ++                 
T Consensus        12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD   91 (284)
T 3gu3_A           12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD   91 (284)
T ss_dssp             HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred             HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCee
Confidence            34444433567889999999999999999999995 89999999 7787655431    0 11                 


Q ss_pred             -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec-----C---CCCCCccccccccchhhHHHh-hCCCCCcCC
Q 035738          236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML-----P---EVPNTSIESKSNSDSDVLMMI-QSPGGKERT  301 (333)
Q Consensus       236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~-----~---~~~~~~~~~~~~~~~d~~m~~-~~~~g~~rt  301 (333)
                           .++|++++..  ++|+++++.|+|||++++.++..     .   ++...+.......+..+.... ...+....+
T Consensus        92 ~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (284)
T 3gu3_A           92 IAICHAFLLHMTTPE--TMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNI  169 (284)
T ss_dssp             EEEEESCGGGCSSHH--HHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTG
T ss_pred             EEEECChhhcCCCHH--HHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccH
Confidence                 5677777665  89999999999999999999861     1   111000000011122222111 012344556


Q ss_pred             HHHHHHHHHhCCCCeeEEee
Q 035738          302 RHEFMTLATGAGFSGISCER  321 (333)
Q Consensus       302 ~~e~~~ll~~aGf~~~~~~~  321 (333)
                      .+++.++|++|||+.+++..
T Consensus       170 ~~~l~~~l~~aGF~~v~~~~  189 (284)
T 3gu3_A          170 GMKIPIYLSELGVKNIECRV  189 (284)
T ss_dssp             GGTHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHHHcCCCeEEEEE
Confidence            77899999999999887744

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.35  E-value=2.1e-12  Score=112.09  Aligned_cols=128  Identities=13%  Similarity=0.087  Sum_probs=88.0

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-C-Ce----------------------EEEccCCh
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-P-CM----------------------WILHDWND  243 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~-gv----------------------~vLh~~~~  243 (333)
                      .+..+|||||||+|.++..+++..+  +++++|+ +.+++.+++. + ++                      .+||++++
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~  118 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD  118 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence            3567899999999999999999876  6899999 7777665431 0 11                      77788877


Q ss_pred             hHHHHHHHHHH-HhCCCCcEEEEEeeecCCCCCCcc--ccccccc---hhhHHHhhCCCCCcCCHHHHHHHHHhCCCCee
Q 035738          244 EHCLKLLKNCY-KSIPEDGKVIAVELMLPEVPNTSI--ESKSNSD---SDVLMMIQSPGGKERTRHEFMTLATGAGFSGI  317 (333)
Q Consensus       244 ~~~~~lL~~~~-~~L~pgG~l~i~e~~~~~~~~~~~--~~~~~~~---~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~  317 (333)
                      ..  ++|++++ ++|+|||++++.++..........  .......   .+.. .. ......++.++|.++|+++||+++
T Consensus       119 ~~--~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~Gf~~~  194 (250)
T 2p7i_A          119 PV--ALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAE-FA-HGHRCTYALDTLERDASRAGLQVT  194 (250)
T ss_dssp             HH--HHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHH-HH-TTCCCCCCHHHHHHHHHHTTCEEE
T ss_pred             HH--HHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhccccc-cc-ccccccCCHHHHHHHHHHCCCeEE
Confidence            64  8999999 999999999998874332100000  0000000   0000 01 123456799999999999999999


Q ss_pred             EEeec
Q 035738          318 SCERA  322 (333)
Q Consensus       318 ~~~~~  322 (333)
                      ++...
T Consensus       195 ~~~~~  199 (250)
T 2p7i_A          195 YRSGI  199 (250)
T ss_dssp             EEEEE
T ss_pred             EEeee
Confidence            88653

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.34  E-value=4.7e-12  Score=109.63  Aligned_cols=122  Identities=17%  Similarity=0.162  Sum_probs=88.7

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CCe-----------------------EEEccC
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PCM-----------------------WILHDW  241 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~gv-----------------------~vLh~~  241 (333)
                      .+..+|||||||+|.++..+++.  ..+++++|+ +.+++.+++.   +++                       .++|++
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  129 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT  129 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence            46779999999999999999987  568999999 8888877653   111                       667777


Q ss_pred             ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEee
Q 035738          242 NDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCER  321 (333)
Q Consensus       242 ~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~  321 (333)
                      ++..  ++|++++++|+|||++++.+.........   .   .+... ... ......++.+++.++++++||+++++..
T Consensus       130 ~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---~---~~~~~-~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  199 (242)
T 3l8d_A          130 EEPL--RALNEIKRVLKSDGYACIAILGPTAKPRE---N---SYPRL-YGK-DVVCNTMMPWEFEQLVKEQGFKVVDGIG  199 (242)
T ss_dssp             SCHH--HHHHHHHHHEEEEEEEEEEEECTTCGGGG---G---GGGGG-GTC-CCSSCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             cCHH--HHHHHHHHHhCCCeEEEEEEcCCcchhhh---h---hhhhh-ccc-cccccCCCHHHHHHHHHHcCCEEEEeec
Confidence            6654  89999999999999999998654332110   0   11111 110 1123457899999999999999998875


Q ss_pred             c
Q 035738          322 A  322 (333)
Q Consensus       322 ~  322 (333)
                      .
T Consensus       200 ~  200 (242)
T 3l8d_A          200 V  200 (242)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.34  E-value=2.8e-12  Score=113.61  Aligned_cols=120  Identities=17%  Similarity=0.222  Sum_probs=90.1

Q ss_pred             CCCeEEEEcCCc---cHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----C----------------------------
Q 035738          190 NIKQLVDVGGGI---GVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----P----------------------------  233 (333)
Q Consensus       190 ~~~~vlDVGgG~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~----------------------------  233 (333)
                      +..+|||||||+   |.++..+.+.+|+.+++++|+ |.+++.+++.    .                            
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~  156 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS  156 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence            457999999999   999888888999999999999 8888766531    0                            


Q ss_pred             --C-e---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHH
Q 035738          234 --C-M---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMT  307 (333)
Q Consensus       234 --g-v---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~  307 (333)
                        . +   .+||++++++..++|++++++|+|||+|++.+...+.   ...   .....+.+.... .....++.++|.+
T Consensus       157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~---~~~---~~~~~~~~~~~~-~~~~~~s~~ei~~  229 (274)
T 2qe6_A          157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG---LPA---QQKLARITRENL-GEGWARTPEEIER  229 (274)
T ss_dssp             SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS---CHH---HHHHHHHHHHHH-SCCCCBCHHHHHH
T ss_pred             CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc---hHH---HHHHHHHHHhcC-CCCccCCHHHHHH
Confidence              1 1   6789999877789999999999999999999986532   111   111222222221 2456789999999


Q ss_pred             HHHhCCCCeeE
Q 035738          308 LATGAGFSGIS  318 (333)
Q Consensus       308 ll~~aGf~~~~  318 (333)
                      +|  .||++++
T Consensus       230 ~l--~G~~l~~  238 (274)
T 2qe6_A          230 QF--GDFELVE  238 (274)
T ss_dssp             TT--TTCEECT
T ss_pred             Hh--CCCeEcc
Confidence            99  6997765

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.33  E-value=3e-12  Score=108.32  Aligned_cols=121  Identities=7%  Similarity=-0.003  Sum_probs=86.6

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------------------CCe------
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------------------PCM------  235 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~gv------  235 (333)
                      +++.+. .....+|||||||+|..+..++++  ..+++++|+ +.+++.|++.                  +++      
T Consensus        14 ~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d   90 (203)
T 1pjz_A           14 YWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD   90 (203)
T ss_dssp             HHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred             HHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECc
Confidence            334444 557789999999999999999987  458999999 8888766421                  111      


Q ss_pred             ------------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCC
Q 035738          236 ------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGG  297 (333)
Q Consensus       236 ------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g  297 (333)
                                        .++|++++++..+++++++++|+|||+++++....+... .                 ....
T Consensus        91 ~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~-~-----------------~~~~  152 (203)
T 1pjz_A           91 FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL-L-----------------EGPP  152 (203)
T ss_dssp             CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS-S-----------------SSCC
T ss_pred             cccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc-c-----------------CCCC
Confidence                              367888877777899999999999999655554332110 0                 0001


Q ss_pred             CcCCHHHHHHHHHhCCCCeeEEeecC
Q 035738          298 KERTRHEFMTLATGAGFSGISCERAI  323 (333)
Q Consensus       298 ~~rt~~e~~~ll~~aGf~~~~~~~~~  323 (333)
                      ...+.+++.+++++ ||+++.+....
T Consensus       153 ~~~~~~el~~~~~~-gf~i~~~~~~~  177 (203)
T 1pjz_A          153 FSVPQTWLHRVMSG-NWEVTKVGGQD  177 (203)
T ss_dssp             CCCCHHHHHHTSCS-SEEEEEEEESS
T ss_pred             CCCCHHHHHHHhcC-CcEEEEecccc
Confidence            12478999999998 99988776543

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.33  E-value=3.1e-12  Score=118.86  Aligned_cols=124  Identities=15%  Similarity=0.165  Sum_probs=90.7

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC--------------CCe-----------------
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH--------------PCM-----------------  235 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------------~gv-----------------  235 (333)
                      .+..+|||||||+|..+..+++.+ |+.+++++|+ +.+++.++++              +++                 
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            467899999999999999999987 7899999999 7777665421              111                 


Q ss_pred             ------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHH
Q 035738          236 ------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRH  303 (333)
Q Consensus       236 ------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~  303 (333)
                                  .++|++++..  ++|++++++|+|||++++.+...+......      .......... ..+..++.+
T Consensus       162 ~~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~  232 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLSTNKL--ALFKEIHRVLRDGGELYFSDVYADRRLSEA------AQQDPILYGE-CLGGALYLE  232 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEESSCCCHH------HHHCHHHHHT-TCTTCCBHH
T ss_pred             CCCCCEEEEEEccchhcCCCHH--HHHHHHHHHcCCCCEEEEEEeccccccCHh------HhhhHHHhhc-ccccCCCHH
Confidence                        5666676654  899999999999999999998765421110      0111111211 245567899


Q ss_pred             HHHHHHHhCCCCeeEEee
Q 035738          304 EFMTLATGAGFSGISCER  321 (333)
Q Consensus       304 e~~~ll~~aGf~~~~~~~  321 (333)
                      +|.++|+++||+.+++..
T Consensus       233 ~~~~ll~~aGF~~v~~~~  250 (383)
T 4fsd_A          233 DFRRLVAEAGFRDVRLVS  250 (383)
T ss_dssp             HHHHHHHHTTCCCEEEEE
T ss_pred             HHHHHHHHCCCceEEEEe
Confidence            999999999999887654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.32  E-value=1.7e-12  Score=121.91  Aligned_cols=132  Identities=14%  Similarity=0.154  Sum_probs=96.5

Q ss_pred             hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--C------------------C-
Q 035738          177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--P------------------C-  234 (333)
Q Consensus       177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~------------------g-  234 (333)
                      ....+++.+. ..+..+|||||||+|.++..++++.  .+++++|+ +.+++.+++.  +                  + 
T Consensus        95 ~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  171 (416)
T 4e2x_A           95 LARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGP  171 (416)
T ss_dssp             HHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCC
Confidence            3456666665 6678899999999999999999864  48999999 7888877653  1                  0 


Q ss_pred             --e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHH
Q 035738          235 --M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTL  308 (333)
Q Consensus       235 --v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~l  308 (333)
                        +    ++||++++..  .+|++++++|+|||++++..+.....     .. ...+..+.   . .....++.++|.++
T Consensus       172 fD~I~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~-----~~-~~~~~~~~---~-~~~~~~s~~~l~~l  239 (416)
T 4e2x_A          172 ANVIYAANTLCHIPYVQ--SVLEGVDALLAPDGVFVFEDPYLGDI-----VA-KTSFDQIF---D-EHFFLFSATSVQGM  239 (416)
T ss_dssp             EEEEEEESCGGGCTTHH--HHHHHHHHHEEEEEEEEEEEECHHHH-----HH-HTCGGGCS---T-TCCEECCHHHHHHH
T ss_pred             EEEEEECChHHhcCCHH--HHHHHHHHHcCCCeEEEEEeCChHHh-----hh-hcchhhhh---h-hhhhcCCHHHHHHH
Confidence              0    7888888654  89999999999999999976643210     00 00011110   0 23445789999999


Q ss_pred             HHhCCCCeeEEeecC
Q 035738          309 ATGAGFSGISCERAI  323 (333)
Q Consensus       309 l~~aGf~~~~~~~~~  323 (333)
                      ++++||+++++...+
T Consensus       240 l~~aGf~~~~~~~~~  254 (416)
T 4e2x_A          240 AQRCGFELVDVQRLP  254 (416)
T ss_dssp             HHHTTEEEEEEEEEC
T ss_pred             HHHcCCEEEEEEEcc
Confidence            999999999998765

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.31  E-value=2.6e-12  Score=114.29  Aligned_cols=135  Identities=15%  Similarity=0.122  Sum_probs=91.7

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe----------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM----------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv----------------  235 (333)
                      .++..++ . ...+|||||||+|.++..+++.  ..+++++|+ +.+++.+++.       +++                
T Consensus        60 ~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  135 (285)
T 4htf_A           60 RVLAEMG-P-QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLET  135 (285)
T ss_dssp             HHHHHTC-S-SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSS
T ss_pred             HHHHhcC-C-CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCC
Confidence            4444443 2 3679999999999999999988  568999999 7887766531       111                


Q ss_pred             --------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhh-------CCCCCcC
Q 035738          236 --------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQ-------SPGGKER  300 (333)
Q Consensus       236 --------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~-------~~~g~~r  300 (333)
                              .++|++++..  ++|++++++|+|||++++.++........   ......+.......       ......+
T Consensus       136 ~fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (285)
T 4htf_A          136 PVDLILFHAVLEWVADPR--SVLQTLWSVLRPGGVLSLMFYNAHGLLMH---NMVAGNFDYVQAGMPKKKKRTLSPDYPR  210 (285)
T ss_dssp             CEEEEEEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEEEBHHHHHHH---HHHTTCHHHHHTTCCCC----CCCSCCB
T ss_pred             CceEEEECchhhcccCHH--HHHHHHHHHcCCCeEEEEEEeCCchHHHH---HHHhcCHHHHhhhccccccccCCCCCCC
Confidence                    6677787664  89999999999999999998754321000   00000001110000       0123456


Q ss_pred             CHHHHHHHHHhCCCCeeEEeecC
Q 035738          301 TRHEFMTLATGAGFSGISCERAI  323 (333)
Q Consensus       301 t~~e~~~ll~~aGf~~~~~~~~~  323 (333)
                      +.++|.++|+++||+++++....
T Consensus       211 ~~~~l~~~l~~aGf~v~~~~~~~  233 (285)
T 4htf_A          211 DPTQVYLWLEEAGWQIMGKTGVR  233 (285)
T ss_dssp             CHHHHHHHHHHTTCEEEEEEEES
T ss_pred             CHHHHHHHHHHCCCceeeeeeEE
Confidence            89999999999999999887764

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.30  E-value=6.8e-12  Score=107.11  Aligned_cols=123  Identities=16%  Similarity=0.161  Sum_probs=84.5

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C-----Ce---------------------
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P-----CM---------------------  235 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-----gv---------------------  235 (333)
                      .+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++.      +     ++                     
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~  107 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT  107 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence            4567999999999999999999999899999999 7888766431      0     11                     


Q ss_pred             --EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHH----HHH
Q 035738          236 --WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFM----TLA  309 (333)
Q Consensus       236 --~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~----~ll  309 (333)
                        .++|++++++..++|++++++|+|||.+++.... +....      +.......+... ......+.+++.    +++
T Consensus       108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~-~~~~~------~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~l~  179 (219)
T 3jwg_A          108 VIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNK-EYNFH------YGNLFEGNLRHR-DHRFEWTRKEFQTWAVKVA  179 (219)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBG-GGGGC------CCCT-----GGG-CCTTSBCHHHHHHHHHHHH
T ss_pred             EHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccch-hhhhh------hcccCccccccc-CceeeecHHHHHHHHHHHH
Confidence              7788899887789999999999999965554442 21100      000000011111 123346888888    788


Q ss_pred             HhCCCCeeEEe
Q 035738          310 TGAGFSGISCE  320 (333)
Q Consensus       310 ~~aGf~~~~~~  320 (333)
                      +++||++ ++.
T Consensus       180 ~~~Gf~v-~~~  189 (219)
T 3jwg_A          180 EKYGYSV-RFL  189 (219)
T ss_dssp             HHHTEEE-EEE
T ss_pred             HHCCcEE-EEE
Confidence            8999964 444

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.30  E-value=3.5e-12  Score=110.18  Aligned_cols=111  Identities=15%  Similarity=0.187  Sum_probs=86.3

Q ss_pred             CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-C------Ce----------------------EEEccC
Q 035738          192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-P------CM----------------------WILHDW  241 (333)
Q Consensus       192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~------gv----------------------~vLh~~  241 (333)
                      .+|||||||+|.++..+++  +..+++++|+ +.+++.+++. .      .+                      .++|++
T Consensus        68 ~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~  145 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAI  145 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTS
T ss_pred             CCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcC
Confidence            5999999999999998876  5678999999 7887766432 0      01                      567888


Q ss_pred             ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEee
Q 035738          242 NDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCER  321 (333)
Q Consensus       242 ~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~  321 (333)
                      ++++..++|++++++|+|||++++.+.........                   ....++.++|.++|+++||+++++..
T Consensus       146 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~~~~~  206 (235)
T 3lcc_A          146 EPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG-------------------PPYKVDVSTFEEVLVPIGFKAVSVEE  206 (235)
T ss_dssp             CGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC-------------------SSCCCCHHHHHHHHGGGTEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC-------------------CCccCCHHHHHHHHHHcCCeEEEEEe
Confidence            87778899999999999999999988754432110                   01125789999999999999999876


Q ss_pred             cC
Q 035738          322 AI  323 (333)
Q Consensus       322 ~~  323 (333)
                      .+
T Consensus       207 ~~  208 (235)
T 3lcc_A          207 NP  208 (235)
T ss_dssp             CT
T ss_pred             cC
Confidence            64

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.30  E-value=3.3e-12  Score=113.35  Aligned_cols=133  Identities=14%  Similarity=0.126  Sum_probs=91.1

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-C---------------C---e----
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-P---------------C---M----  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~---------------g---v----  235 (333)
                      .+++.+. ..+..+|||||||+|.++..+++  +..+++++|+ +.+++.+++. +               +   +    
T Consensus        48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~  124 (279)
T 3ccf_A           48 DLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSN  124 (279)
T ss_dssp             HHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEE
T ss_pred             HHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEc
Confidence            4455555 56778999999999999999998  7789999999 7887766531 1               1   1    


Q ss_pred             EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHh------hCCCCCcCCHHHHHHHH
Q 035738          236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMI------QSPGGKERTRHEFMTLA  309 (333)
Q Consensus       236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~------~~~~g~~rt~~e~~~ll  309 (333)
                      .++|++++..  ++|++++++|+|||++++..+.....  ...   ...+.......      .......++.++|.++|
T Consensus       125 ~~l~~~~d~~--~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  197 (279)
T 3ccf_A          125 AMLHWVKEPE--AAIASIHQALKSGGRFVAEFGGKGNI--KYI---LEALYNALETLGIHNPQALNPWYFPSIGEYVNIL  197 (279)
T ss_dssp             SCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECTTTT--HHH---HHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHH
T ss_pred             chhhhCcCHH--HHHHHHHHhcCCCcEEEEEecCCcch--HHH---HHHHHHHHHhcCCccccCcCceeCCCHHHHHHHH
Confidence            6677777655  89999999999999999987643221  000   00011110000      00012356899999999


Q ss_pred             HhCCCCeeEEeec
Q 035738          310 TGAGFSGISCERA  322 (333)
Q Consensus       310 ~~aGf~~~~~~~~  322 (333)
                      +++||+++++...
T Consensus       198 ~~aGf~~~~~~~~  210 (279)
T 3ccf_A          198 EKQGFDVTYAALF  210 (279)
T ss_dssp             HHHTEEEEEEEEE
T ss_pred             HHcCCEEEEEEEe
Confidence            9999999887654

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.29  E-value=6.1e-12  Score=108.18  Aligned_cols=130  Identities=14%  Similarity=0.113  Sum_probs=88.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----C------Ce--------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----P------CM--------------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~------gv--------------------  235 (333)
                      +.+..+|||||||+|.++..+++.  ..+++++|+ +.+++.+++.     .      .+                    
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v  105 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA  105 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence            346789999999999999999988  568999999 7777665431     0      00                    


Q ss_pred             ---EEEccCCh-hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhC--------------CCC
Q 035738          236 ---WILHDWND-EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQS--------------PGG  297 (333)
Q Consensus       236 ---~vLh~~~~-~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~--------------~~g  297 (333)
                         .++|++++ +...++|++++++|+|||++++.+........  .. .......+......              ...
T Consensus       106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (235)
T 3sm3_A          106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLK--LY-RKRYLHDFPITKEEGSFLARDPETGETEFIA  182 (235)
T ss_dssp             EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSH--HH-HHHHHHHHHHHCSTTEEEEECTTTCCEEEEE
T ss_pred             EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHH--HH-HHHhhhhccchhhhcceEecccccCCcceee
Confidence               66777765 44668999999999999999999986543210  00 00000011010000              001


Q ss_pred             CcCCHHHHHHHHHhCCCCeeEEeec
Q 035738          298 KERTRHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       298 ~~rt~~e~~~ll~~aGf~~~~~~~~  322 (333)
                      ..++.++|.++|+++||+++++...
T Consensus       183 ~~~~~~~l~~ll~~aGf~~~~~~~~  207 (235)
T 3sm3_A          183 HHFTEKELVFLLTDCRFEIDYFRVK  207 (235)
T ss_dssp             ECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred             EeCCHHHHHHHHHHcCCEEEEEEec
Confidence            3578999999999999999988643

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.29  E-value=3.8e-12  Score=108.56  Aligned_cols=122  Identities=12%  Similarity=0.116  Sum_probs=84.1

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C-----Ce--------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P-----CM--------------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-----gv--------------------  235 (333)
                      ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++.      +     ++                    
T Consensus        27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  106 (217)
T 3jwh_A           27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA  106 (217)
T ss_dssp             HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred             hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence            34567999999999999999999999899999999 7887766431      0     11                    


Q ss_pred             ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHH----HH
Q 035738          236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFM----TL  308 (333)
Q Consensus       236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~----~l  308 (333)
                         .++|++++++..++|++++++|+|||.+++........       .+.......+... .....++.+++.    ++
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~  178 (217)
T 3jwh_A          107 TVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNV-------KFANLPAGKLRHK-DHRFEWTRSQFQNWANKI  178 (217)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHH-------HTC------------CCSCBCHHHHHHHHHHH
T ss_pred             eeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccch-------hhccccccccccc-ccccccCHHHHHHHHHHH
Confidence               77888888877899999999999999766665421100       0000000000000 123346888888    88


Q ss_pred             HHhCCCCee
Q 035738          309 ATGAGFSGI  317 (333)
Q Consensus       309 l~~aGf~~~  317 (333)
                      ++++||+++
T Consensus       179 ~~~~Gf~v~  187 (217)
T 3jwh_A          179 TERFAYNVQ  187 (217)
T ss_dssp             HHHSSEEEE
T ss_pred             HHHcCceEE
Confidence            999999754

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.29  E-value=2.9e-12  Score=111.87  Aligned_cols=140  Identities=15%  Similarity=0.112  Sum_probs=90.4

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CCe-------------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PCM-------------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~gv-------------------  235 (333)
                      ..+...++ .....+|||||||+|.++..+++..+. +++++|+ +.+++.+++.   .++                   
T Consensus        34 ~~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~  111 (253)
T 3g5l_A           34 HELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV  111 (253)
T ss_dssp             HHHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred             HHHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence            34455444 446789999999999999999998765 8999999 7887766432   111                   


Q ss_pred             ----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC-----------CCCCccccccccchh-----hHHHhhCC
Q 035738          236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPE-----------VPNTSIESKSNSDSD-----VLMMIQSP  295 (333)
Q Consensus       236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~-----------~~~~~~~~~~~~~~d-----~~m~~~~~  295 (333)
                          .++|++++.  .++|++++++|+|||++++.......           .............++     ........
T Consensus       112 v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (253)
T 3g5l_A          112 VLSSLALHYIASF--DDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDV  189 (253)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEE
T ss_pred             EEEchhhhhhhhH--HHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccC
Confidence                667777654  49999999999999999997553210           000000000000000     00000000


Q ss_pred             CCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738          296 GGKERTRHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       296 ~g~~rt~~e~~~ll~~aGf~~~~~~~~  322 (333)
                      ....++.++|.++|+++||+++++...
T Consensus       190 ~~~~~t~~~~~~~l~~aGF~~~~~~e~  216 (253)
T 3g5l_A          190 QKYHRTVTTYIQTLLKNGFQINSVIEP  216 (253)
T ss_dssp             EEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred             ccEecCHHHHHHHHHHcCCeeeeeecC
Confidence            112348999999999999999998754

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.28  E-value=1.9e-12  Score=113.34  Aligned_cols=134  Identities=11%  Similarity=0.097  Sum_probs=89.3

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CC------------------e----
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PC------------------M----  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~g------------------v----  235 (333)
                      .++..++ .....+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. ++                  +    
T Consensus        24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~  102 (259)
T 2p35_A           24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYAN  102 (259)
T ss_dssp             HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEEE
T ss_pred             HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEEe
Confidence            4556555 66778999999999999999999999999999999 7888766431 11                  1    


Q ss_pred             EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccc---cchhhHHHhhCCCCCcCCHHHHHHHHHhC
Q 035738          236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSN---SDSDVLMMIQSPGGKERTRHEFMTLATGA  312 (333)
Q Consensus       236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~---~~~d~~m~~~~~~g~~rt~~e~~~ll~~a  312 (333)
                      .++|++++..  ++|++++++|+|||++++.++...............   .+..............++.++|.++|+++
T Consensus       103 ~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  180 (259)
T 2p35_A          103 AVFQWVPDHL--AVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPK  180 (259)
T ss_dssp             SCGGGSTTHH--HHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHHGGG
T ss_pred             CchhhCCCHH--HHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHHHhc
Confidence            6677776554  899999999999999999986432210000000000   00000000000123457899999999999


Q ss_pred             CCCe
Q 035738          313 GFSG  316 (333)
Q Consensus       313 Gf~~  316 (333)
                      ||++
T Consensus       181 Gf~v  184 (259)
T 2p35_A          181 SSRV  184 (259)
T ss_dssp             EEEE
T ss_pred             CCce
Confidence            9964

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.28  E-value=2e-12  Score=110.77  Aligned_cols=137  Identities=16%  Similarity=0.185  Sum_probs=92.0

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------------C-C---e-
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------------P-C---M-  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------~-g---v-  235 (333)
                      ...+++.++  .+..+|||||||+|.++..+++. + .+++++|+ +.+++.+++.                + +   + 
T Consensus        22 ~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v   97 (230)
T 3cc8_A           22 NPNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCV   97 (230)
T ss_dssp             CHHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEE
T ss_pred             HHHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEE
Confidence            345555443  46789999999999999999988 4 89999999 7777766532                0 1   1 


Q ss_pred             ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccccc-ccch--hhHHHhhCCCCCcCCHHHHHHHH
Q 035738          236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKS-NSDS--DVLMMIQSPGGKERTRHEFMTLA  309 (333)
Q Consensus       236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~-~~~~--d~~m~~~~~~g~~rt~~e~~~ll  309 (333)
                         .++|++++..  .+|+++++.|+|||++++..+.......  ..... ..+.  ....... .....++.++|.++|
T Consensus        98 ~~~~~l~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l  172 (230)
T 3cc8_A           98 IFGDVLEHLFDPW--AVIEKVKPYIKQNGVILASIPNVSHISV--LAPLLAGNWTYTEYGLLDK-THIRFFTFNEMLRMF  172 (230)
T ss_dssp             EEESCGGGSSCHH--HHHHHTGGGEEEEEEEEEEEECTTSHHH--HHHHHTTCCCCBSSSTTBT-TCCCCCCHHHHHHHH
T ss_pred             EECChhhhcCCHH--HHHHHHHHHcCCCCEEEEEeCCcchHHH--HHHHhcCCceeccCCCCCc-ceEEEecHHHHHHHH
Confidence               6677777664  8999999999999999998864322100  00000 0000  0000000 122457899999999


Q ss_pred             HhCCCCeeEEeecC
Q 035738          310 TGAGFSGISCERAI  323 (333)
Q Consensus       310 ~~aGf~~~~~~~~~  323 (333)
                      +++||+++++....
T Consensus       173 ~~~Gf~~~~~~~~~  186 (230)
T 3cc8_A          173 LKAGYSISKVDRVY  186 (230)
T ss_dssp             HHTTEEEEEEEEEE
T ss_pred             HHcCCeEEEEEecc
Confidence            99999999887653

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.26  E-value=1.6e-11  Score=109.79  Aligned_cols=120  Identities=13%  Similarity=0.078  Sum_probs=81.5

Q ss_pred             CCCCeEEEEcCCccHHHH----HHHHHCCCCeE--EEeec-hhHhhhCCCC----------------------C------
Q 035738          189 DNIKQLVDVGGGIGVTLQ----AITTKYPYIKG--INFDL-PHVIEHVPPH----------------------P------  233 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~~----------------------~------  233 (333)
                      .+..+|||||||+|.++.    .+..++|+.++  +++|. +.+++.+++.                      +      
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            356799999999997654    44566788854  99998 7777643210                      0      


Q ss_pred             ---C----e---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCC---CCCcC
Q 035738          234 ---C----M---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSP---GGKER  300 (333)
Q Consensus       234 ---g----v---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~---~g~~r  300 (333)
                         +    |   ++||+++|..  +.|++++++|||||++++.+...+.    .+    ...+.-.. ....   ....+
T Consensus       131 ~~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~----~~----~~~~~~~~-~~~~~~~~~~~~  199 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGTNAKMLIIVVSGSS----GW----DKLWKKYG-SRFPQDDLCQYI  199 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEEECTTS----HH----HHHHHHHG-GGSCCCTTCCCC
T ss_pred             cCCCceeEEEEeeeeeecCCHH--HHHHHHHHHcCCCcEEEEEEecCCc----cH----HHHHHHHH-HhccCCCcccCC
Confidence               1    1   6888998776  8999999999999999999753211    10    00111000 0011   12457


Q ss_pred             CHHHHHHHHHhCCCCeeEE
Q 035738          301 TRHEFMTLATGAGFSGISC  319 (333)
Q Consensus       301 t~~e~~~ll~~aGf~~~~~  319 (333)
                      +.++|.++|+++||+.++.
T Consensus       200 ~~~~~~~~l~~aGf~~~~~  218 (292)
T 2aot_A          200 TSDDLTQMLDNLGLKYECY  218 (292)
T ss_dssp             CHHHHHHHHHHHTCCEEEE
T ss_pred             CHHHHHHHHHHCCCceEEE
Confidence            8999999999999998764

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.26  E-value=1.9e-11  Score=108.02  Aligned_cols=139  Identities=10%  Similarity=0.048  Sum_probs=92.2

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hh------HhhhCCCC-------------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PH------VIEHVPPH-------------------  232 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~~-------------------  232 (333)
                      .+++.++ ..+..+|||||||+|.++..+++++ |+.+++++|+ +.      +++.++++                   
T Consensus        34 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  112 (275)
T 3bkx_A           34 AIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS  112 (275)
T ss_dssp             HHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred             HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence            4555555 6678899999999999999999996 7789999999 53      44332210                   


Q ss_pred             ------C-C---e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccccc-ccchhhHHHhhC---
Q 035738          233 ------P-C---M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKS-NSDSDVLMMIQS---  294 (333)
Q Consensus       233 ------~-g---v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~-~~~~d~~m~~~~---  294 (333)
                            + +   +    .++|++++..  .+++.++..++|||++++.+...+...... .... .......+....   
T Consensus       113 ~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  189 (275)
T 3bkx_A          113 DDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQ-IGHLQAAMIQGLLYAIAPSD  189 (275)
T ss_dssp             TCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGG-HHHHHHHHHHHHHHHHSCCT
T ss_pred             hccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhh-hhHHHHHHHHHHHhhccccc
Confidence                  0 1   1    6677777765  478888888888999999998776532110 0000 000000010000   


Q ss_pred             -CC-CCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738          295 -PG-GKERTRHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       295 -~~-g~~rt~~e~~~ll~~aGf~~~~~~~~  322 (333)
                       .+ ...++.++|.++++++||+++++...
T Consensus       190 ~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~  219 (275)
T 3bkx_A          190 VANIRTLITPDTLAQIAHDNTWTYTAGTIV  219 (275)
T ss_dssp             TCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred             cccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence             01 13578999999999999999887765

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.25  E-value=1.9e-11  Score=101.80  Aligned_cols=112  Identities=13%  Similarity=0.155  Sum_probs=85.3

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------------C-C-e-----
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------------P-C-M-----  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------~-g-v-----  235 (333)
                      .++..+  ..+..+|||||||+|.++..+++.  ..+++++|+ +.+++.+++.                + + .     
T Consensus        38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~  113 (195)
T 3cgg_A           38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS  113 (195)
T ss_dssp             HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred             HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence            344444  446789999999999999999987  568999999 7777665431                0 1 1     


Q ss_pred             --EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCC
Q 035738          236 --WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAG  313 (333)
Q Consensus       236 --~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aG  313 (333)
                        .++|+++++....+|+++.+.|+|||++++.....                           ..++.++|.++++++|
T Consensus       114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~---------------------------~~~~~~~~~~~l~~~G  166 (195)
T 3cgg_A          114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG---------------------------RGWVFGDFLEVAERVG  166 (195)
T ss_dssp             CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT---------------------------SSCCHHHHHHHHHHHT
T ss_pred             CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC---------------------------CCcCHHHHHHHHHHcC
Confidence              35666777777899999999999999999865421                           1246889999999999


Q ss_pred             CCeeEEeec
Q 035738          314 FSGISCERA  322 (333)
Q Consensus       314 f~~~~~~~~  322 (333)
                      |+++++...
T Consensus       167 f~~~~~~~~  175 (195)
T 3cgg_A          167 LELENAFES  175 (195)
T ss_dssp             EEEEEEESS
T ss_pred             CEEeeeecc
Confidence            999887644

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.25  E-value=6.6e-12  Score=109.08  Aligned_cols=129  Identities=15%  Similarity=0.079  Sum_probs=88.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC------------------------e----
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC------------------------M----  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g------------------------v----  235 (333)
                      .....+|||||||+|.++..+++..+  +++++|+ +.+++.+++.   .+                        +    
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~  131 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR  131 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence            45678999999999999999999988  7999999 7888776432   11                        1    


Q ss_pred             EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccc----cccccchhhHHHhhCCCCCcCCHHHHHHHHHh
Q 035738          236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIE----SKSNSDSDVLMMIQSPGGKERTRHEFMTLATG  311 (333)
Q Consensus       236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~----~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~  311 (333)
                      .++|++++++..++|++++++|+|||+++|.+...++.......    ........-.+.. ......++.+++.++|  
T Consensus       132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--  208 (245)
T 3ggd_A          132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEH-GIRPGIFTAEDIELYF--  208 (245)
T ss_dssp             SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTT-TCCCCCCCHHHHHHHC--
T ss_pred             chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhcccc-CCCCCccCHHHHHHHh--
Confidence            57788887777899999999999999999999865431000000    0000000001100 0112246899999999  


Q ss_pred             CCCCeeEEee
Q 035738          312 AGFSGISCER  321 (333)
Q Consensus       312 aGf~~~~~~~  321 (333)
                      +||++++...
T Consensus       209 aGf~~~~~~~  218 (245)
T 3ggd_A          209 PDFEILSQGE  218 (245)
T ss_dssp             TTEEEEEEEC
T ss_pred             CCCEEEeccc
Confidence            9999887643

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.23  E-value=3e-11  Score=101.13  Aligned_cols=122  Identities=15%  Similarity=0.085  Sum_probs=89.4

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------  235 (333)
                      .+++.++ ..+..+|||||||+|.++..+++.  ..+++++|+ +.+++.+++.      +++                 
T Consensus        23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D   99 (199)
T 2xvm_A           23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD   99 (199)
T ss_dssp             HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred             HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence            3444444 445679999999999999999987  568999999 7787765431      111                 


Q ss_pred             -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHH
Q 035738          236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLAT  310 (333)
Q Consensus       236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~  310 (333)
                           .++|++++++..++|++++++|+|||++++++....+.....                ......++.+++.++|+
T Consensus       100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~  163 (199)
T 2xvm_A          100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGELRRYYE  163 (199)
T ss_dssp             EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC----------------SCCSCCBCTTHHHHHTT
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC----------------CCCCCccCHHHHHHHhc
Confidence                 567888877778999999999999999999988655431100                01223457889999998


Q ss_pred             hCCCCeeEEeec
Q 035738          311 GAGFSGISCERA  322 (333)
Q Consensus       311 ~aGf~~~~~~~~  322 (333)
                      +  |++++....
T Consensus       164 ~--f~~~~~~~~  173 (199)
T 2xvm_A          164 G--WERVKYNED  173 (199)
T ss_dssp             T--SEEEEEECC
T ss_pred             C--CeEEEeccc
Confidence            6  988877543

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.23  E-value=4.6e-11  Score=101.59  Aligned_cols=120  Identities=16%  Similarity=0.142  Sum_probs=83.4

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhh----CCCC--C-C---e----EEEccCCh
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEH----VPPH--P-C---M----WILHDWND  243 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~~--~-g---v----~vLh~~~~  243 (333)
                      ..+++.+....+..+|||||||+|.++..+.     .+++++|+ +..+..    +...  + +   +    .++| +. 
T Consensus        56 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~~-  128 (215)
T 2zfu_A           56 DRIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLM-GT-  128 (215)
T ss_dssp             HHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCSSTTEEESCTTSCSCCTTCEEEEEEESCCC-SS-
T ss_pred             HHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCCCceEEEeccccCCCCCCCEeEEEEehhcc-cc-
Confidence            3445544434567899999999999998772     57899998 331111    1111  1 1   1    5556 33 


Q ss_pred             hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecC
Q 035738          244 EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAI  323 (333)
Q Consensus       244 ~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~  323 (333)
                       +...+|++++++|+|||++++.+....                           ..+.++|.++++++||+++++....
T Consensus       129 -~~~~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~~~~l~~~Gf~~~~~~~~~  180 (215)
T 2zfu_A          129 -NIRDFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTFLRAVTKLGFKIVSKDLTN  180 (215)
T ss_dssp             -CHHHHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHHHHHHHHTTEEEEEEECCS
T ss_pred             -CHHHHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHHHHHHHHCCCEEEEEecCC
Confidence             345899999999999999999975311                           1168999999999999998877666


Q ss_pred             CceeEEEEeC
Q 035738          324 GNLWVMEFYK  333 (333)
Q Consensus       324 ~~~~vie~~~  333 (333)
                      +...++.+.|
T Consensus       181 ~~~~~~~~~k  190 (215)
T 2zfu_A          181 SHFFLFDFQK  190 (215)
T ss_dssp             TTCEEEEEEE
T ss_pred             CeEEEEEEEe
Confidence            6666666653

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.21  E-value=2.9e-11  Score=104.57  Aligned_cols=75  Identities=15%  Similarity=0.264  Sum_probs=58.6

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CCe----------------------E-EEc
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PCM----------------------W-ILH  239 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~gv----------------------~-vLh  239 (333)
                      ....+|||||||+|.++..+++.   .+++++|+ +.+++.+++.     .++                      . ++|
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  108 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLN  108 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence            34589999999999999999887   68999999 7887766531     110                      1 455


Q ss_pred             cC-ChhHHHHHHHHHHHhCCCCcEEEEE
Q 035738          240 DW-NDEHCLKLLKNCYKSIPEDGKVIAV  266 (333)
Q Consensus       240 ~~-~~~~~~~lL~~~~~~L~pgG~l~i~  266 (333)
                      ++ ++++..++|++++++|+|||++++.
T Consensus       109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A          109 YLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             GCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            55 4566779999999999999999874

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.20  E-value=5.2e-12  Score=112.98  Aligned_cols=41  Identities=17%  Similarity=0.346  Sum_probs=37.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP  230 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~  230 (333)
                      ...+|||||||+|.++..+++.++..+++++|+ +.+++.|+
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~   87 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSAR   87 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHH
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            578999999999999999999999999999999 77777654

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.19  E-value=1.7e-11  Score=107.38  Aligned_cols=127  Identities=13%  Similarity=0.092  Sum_probs=83.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CCe-----------------------EEE
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PCM-----------------------WIL  238 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~gv-----------------------~vL  238 (333)
                      ..+..+|||||||+|.++..+++.  ..+++++|+ +.+++.+++.     +++                       .++
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  114 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW  114 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence            567789999999999999999987  468999999 7787765321     111                       667


Q ss_pred             ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCC---CCCcCCHHHHHHHHHhCCCC
Q 035738          239 HDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSP---GGKERTRHEFMTLATGAGFS  315 (333)
Q Consensus       239 h~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~---~g~~rt~~e~~~ll~~aGf~  315 (333)
                      |++++..  ++|++++++|+|||++++. ...++. . ........+..+......+   .....+.++|.++|+++||+
T Consensus       115 ~~~~~~~--~~l~~~~~~L~pgG~l~~~-~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  189 (263)
T 2yqz_A          115 HLVPDWP--KVLAEAIRVLKPGGALLEG-WDQAEA-S-PEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK  189 (263)
T ss_dssp             GGCTTHH--HHHHHHHHHEEEEEEEEEE-EEEECC-C-HHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             hhcCCHH--HHHHHHHHHCCCCcEEEEE-ecCCCc-c-HHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence            7777554  8999999999999999988 222210 1 1000000011111110000   11245788999999999999


Q ss_pred             eeEEee
Q 035738          316 GISCER  321 (333)
Q Consensus       316 ~~~~~~  321 (333)
                      ++.+..
T Consensus       190 ~~~~~~  195 (263)
T 2yqz_A          190 PRTREV  195 (263)
T ss_dssp             CEEEEE
T ss_pred             cceEEE
Confidence            776543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.19  E-value=1.1e-10  Score=100.41  Aligned_cols=125  Identities=11%  Similarity=0.071  Sum_probs=86.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC----CCCC--------------------e-EEEccC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP----PHPC--------------------M-WILHDW  241 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~g--------------------v-~vLh~~  241 (333)
                      ..+..+|||||||+|.++..+++.++..+++++|+ +.+++.++    ..++                    . .|+|++
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~  151 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV  151 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEECC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEec
Confidence            56778999999999999999999998889999999 77775432    2111                    1 556776


Q ss_pred             Chh-HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEe
Q 035738          242 NDE-HCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCE  320 (333)
Q Consensus       242 ~~~-~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~  320 (333)
                      +++ ....+|+++.+.|+|||++++. ..........       ...  .         ...+++. +|+++||+.+++.
T Consensus       152 ~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~-------~~~--~---------~~~~~l~-~l~~~Gf~~~~~~  211 (230)
T 1fbn_A          152 AQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTK-------DPK--E---------IFKEQKE-ILEAGGFKIVDEV  211 (230)
T ss_dssp             CSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSS-------CHH--H---------HHHHHHH-HHHHHTEEEEEEE
T ss_pred             CChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCC-------CHH--H---------hhHHHHH-HHHHCCCEEEEEE
Confidence            655 3346799999999999999997 3211110000       000  0         1146777 9999999999988


Q ss_pred             ecCCc---eeEEEEe
Q 035738          321 RAIGN---LWVMEFY  332 (333)
Q Consensus       321 ~~~~~---~~vie~~  332 (333)
                      +...+   +.++.+.
T Consensus       212 ~~~~~~~~~~~v~~~  226 (230)
T 1fbn_A          212 DIEPFEKDHVMFVGI  226 (230)
T ss_dssp             ECTTTSTTEEEEEEE
T ss_pred             ccCCCccceEEEEEE
Confidence            77543   5555544

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.19  E-value=2.6e-11  Score=103.63  Aligned_cols=117  Identities=16%  Similarity=0.181  Sum_probs=81.2

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--------------C-C---e----EEEccCChhHHH
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--------------P-C---M----WILHDWNDEHCL  247 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~-g---v----~vLh~~~~~~~~  247 (333)
                      ..+|||||||+|.++..+++.      +++|+ +.+++.+++.              + +   +    .+||++++..  
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~--  119 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPE--  119 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHH--
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcchHhhccCHH--
Confidence            779999999999999988765      88998 7777765432              1 1   1    6677776654  


Q ss_pred             HHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHH-HhhCCCCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738          248 KLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLM-MIQSPGGKERTRHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       248 ~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m-~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  322 (333)
                      ++|++++++|+|||++++.++.....    . ...  ...... .........++.++|.++|+++||+++++...
T Consensus       120 ~~l~~~~~~L~pgG~l~i~~~~~~~~----~-~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~  188 (219)
T 1vlm_A          120 RALKEAYRILKKGGYLIVGIVDRESF----L-GRE--YEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT  188 (219)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEECSSSH----H-HHH--HHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             HHHHHHHHHcCCCcEEEEEEeCCccH----H-HHH--HHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence            89999999999999999988743211    0 000  000000 00001234578999999999999999988755

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.17  E-value=2.2e-10  Score=96.64  Aligned_cols=109  Identities=9%  Similarity=0.181  Sum_probs=82.8

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------  235 (333)
                      .++..+. ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.++++      .++                 
T Consensus        31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  109 (204)
T 3e05_A           31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP  109 (204)
T ss_dssp             HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred             HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence            3455555 66788999999999999999999999999999999 8888777542      111                 


Q ss_pred             -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCC
Q 035738          236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGF  314 (333)
Q Consensus       236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf  314 (333)
                       .++.........++++++.+.|+|||++++......                             +.+++.++++++||
T Consensus       110 D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------------------------~~~~~~~~l~~~g~  160 (204)
T 3e05_A          110 DRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVTLD-----------------------------TLTKAVEFLEDHGY  160 (204)
T ss_dssp             SEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECBHH-----------------------------HHHHHHHHHHHTTC
T ss_pred             CEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecccc-----------------------------cHHHHHHHHHHCCC
Confidence             444444333556899999999999999998665211                             25678899999998


Q ss_pred             CeeEE
Q 035738          315 SGISC  319 (333)
Q Consensus       315 ~~~~~  319 (333)
                       .+++
T Consensus       161 -~~~~  164 (204)
T 3e05_A          161 -MVEV  164 (204)
T ss_dssp             -EEEE
T ss_pred             -ceeE
Confidence             4443

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.17  E-value=9e-11  Score=99.06  Aligned_cols=115  Identities=17%  Similarity=0.070  Sum_probs=90.0

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe----------------EEEccCChhH
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM----------------WILHDWNDEH  245 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv----------------~vLh~~~~~~  245 (333)
                      .+..+|||||||+|.++..+++ .+..+++++|+ +.+++.++++      .++                .|+.+..-+.
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~  137 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI  137 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred             cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence            4568999999999999999776 57779999999 8888777542      112                4444445555


Q ss_pred             HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecCCc
Q 035738          246 CLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGN  325 (333)
Q Consensus       246 ~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~  325 (333)
                      ..++++++.+.|+|||++++.+....                             +.+++.++++++||+.+++.....+
T Consensus       138 ~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~~~~~Gf~~~~~~~~~~w  188 (205)
T 3grz_A          138 LLDLIPQLDSHLNEDGQVIFSGIDYL-----------------------------QLPKIEQALAENSFQIDLKMRAGRW  188 (205)
T ss_dssp             HHHHGGGSGGGEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTEEEEEEEEETTE
T ss_pred             HHHHHHHHHHhcCCCCEEEEEecCcc-----------------------------cHHHHHHHHHHcCCceEEeeccCCE
Confidence            67899999999999999999766321                             2668899999999999999988888


Q ss_pred             eeEEEEeC
Q 035738          326 LWVMEFYK  333 (333)
Q Consensus       326 ~~vie~~~  333 (333)
                      .+++.-.|
T Consensus       189 ~~~~~~~~  196 (205)
T 3grz_A          189 IGLAISRK  196 (205)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEecc
Confidence            88876543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.16  E-value=7.2e-11  Score=101.37  Aligned_cols=116  Identities=10%  Similarity=0.070  Sum_probs=82.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCC----CCCCe---------------------EEEcc
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVP----PHPCM---------------------WILHD  240 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~----~~~gv---------------------~vLh~  240 (333)
                      +.++.+|||+|||+|.++..+++. .|+-+++++|+ |.+++.++    +.+++                     .++++
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d  154 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD  154 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence            778999999999999999999986 58999999999 88876553    22332                     45666


Q ss_pred             CCh-hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEE
Q 035738          241 WND-EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISC  319 (333)
Q Consensus       241 ~~~-~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~  319 (333)
                      ++. ++...+++++++.|||||+++|.......+              ...     .. ....++-.+.|+++||+.+++
T Consensus       155 ~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d--------------~~~-----p~-~~~~~~ev~~L~~~GF~l~e~  214 (233)
T 4df3_A          155 VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSID--------------VTT-----EP-SEVYKREIKTLMDGGLEIKDV  214 (233)
T ss_dssp             CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHH--------------HHT-----CC-CHHHHHHHHHHHHTTCCEEEE
T ss_pred             ccCChhHHHHHHHHHHhccCCCEEEEEEecccCC--------------CCC-----Ch-HHHHHHHHHHHHHCCCEEEEE
Confidence            542 344578999999999999999875422111              000     00 001234456789999999998


Q ss_pred             eecC
Q 035738          320 ERAI  323 (333)
Q Consensus       320 ~~~~  323 (333)
                      ....
T Consensus       215 i~L~  218 (233)
T 4df3_A          215 VHLD  218 (233)
T ss_dssp             EECT
T ss_pred             EccC
Confidence            8764

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.16  E-value=5.6e-11  Score=102.84  Aligned_cols=130  Identities=10%  Similarity=0.099  Sum_probs=84.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--------------------CC---e----E-EEcc
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--------------------PC---M----W-ILHD  240 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------------~g---v----~-vLh~  240 (333)
                      +..+|||||||+|.++..+++..  .+++++|+ +.+++.+++.                    ++   +    . +||+
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~  114 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY  114 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCC--CcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence            56799999999999999999874  57999999 7887766431                    01   1    3 6777


Q ss_pred             CC-hhHHHHHHHHHHHhCCCCcEEEEEeeecCCC----CCCccc---cccc-cc----------hhhHHHhhCCC-----
Q 035738          241 WN-DEHCLKLLKNCYKSIPEDGKVIAVELMLPEV----PNTSIE---SKSN-SD----------SDVLMMIQSPG-----  296 (333)
Q Consensus       241 ~~-~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~----~~~~~~---~~~~-~~----------~d~~m~~~~~~-----  296 (333)
                      ++ +++..++|++++++|+|||++++..+.....    ......   .... .+          ..+.++.. .+     
T Consensus       115 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  193 (246)
T 1y8c_A          115 IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVR-DGEFYKR  193 (246)
T ss_dssp             CCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEE-CSSSEEE
T ss_pred             cCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEe-cCCcccc
Confidence            74 3567799999999999999998744321100    000000   0000 00          00001100 01     


Q ss_pred             ------CCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738          297 ------GKERTRHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       297 ------g~~rt~~e~~~ll~~aGf~~~~~~~~  322 (333)
                            .+.++.++|.++|+++||+++++...
T Consensus       194 ~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~  225 (246)
T 1y8c_A          194 FDEEHEERAYKEEDIEKYLKHGQLNILDKVDC  225 (246)
T ss_dssp             EEEEEEEECCCHHHHHHHHHHTTEEEEEEEES
T ss_pred             cEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcc
Confidence                  23569999999999999999998754

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.15  E-value=1.3e-10  Score=99.94  Aligned_cols=126  Identities=11%  Similarity=0.074  Sum_probs=77.0

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeech-h-HhhhC---CCC------CCe---------------------E
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLP-H-VIEHV---PPH------PCM---------------------W  236 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~-~-~~~~a---~~~------~gv---------------------~  236 (333)
                      .+..+|||||||+|.++..+++++|+.+++++|+. . +++.|   ++.      +++                     .
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~  102 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS  102 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence            45679999999999999999999999999999993 4 44444   442      222                     1


Q ss_pred             EEccCChhH------HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHH
Q 035738          237 ILHDWNDEH------CLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLAT  310 (333)
Q Consensus       237 vLh~~~~~~------~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~  310 (333)
                      +...|+...      ...+|++++++|||||++++........ ..  ...  .......    ........+++.++++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~-~~--~~~--~~~~~~~----~~~~~~~~~el~~~l~  173 (225)
T 3p2e_A          103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSY-EE--AEI--KKRGLPL----LSKAYFLSEQYKAELS  173 (225)
T ss_dssp             EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-----------------------CCHHHHHSHHHHHHHH
T ss_pred             EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccc-hh--chh--hhcCCCC----CChhhcchHHHHHHHH
Confidence            212222110      1368999999999999999955433321 00  000  0000000    0000111235999999


Q ss_pred             hCCCCeeEEeecC
Q 035738          311 GAGFSGISCERAI  323 (333)
Q Consensus       311 ~aGf~~~~~~~~~  323 (333)
                      ++||++.++...+
T Consensus       174 ~aGf~v~~~~~~~  186 (225)
T 3p2e_A          174 NSGFRIDDVKELD  186 (225)
T ss_dssp             HHTCEEEEEEEEC
T ss_pred             HcCCCeeeeeecC
Confidence            9999988877654

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.15  E-value=3.1e-10  Score=96.65  Aligned_cols=123  Identities=12%  Similarity=0.118  Sum_probs=79.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhh----CCCC------CCe-------------------EE
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEH----VPPH------PCM-------------------WI  237 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~~------~gv-------------------~v  237 (333)
                      ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.    +++.      +++                   .+
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~  104 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV  104 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence            55678999999999999999999999999999999 776664    2221      222                   11


Q ss_pred             Ec--------cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHH
Q 035738          238 LH--------DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLA  309 (333)
Q Consensus       238 Lh--------~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll  309 (333)
                      ..        +.+++  .++|++++++|+|||++++...........      ....+..     .-......+++.+++
T Consensus       105 ~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~l~~~l  171 (218)
T 3mq2_A          105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRPGASFLVALNLHAWRPSV------PEVGEHP-----EPTPDSADEWLAPRY  171 (218)
T ss_dssp             ESCCHHHHHHHHTSS--SHHHHHHHHTEEEEEEEEEEEEGGGBTTBC------GGGTTCC-----CCCHHHHHHHHHHHH
T ss_pred             EccchhhhhhhhccH--HHHHHHHHHHcCCCcEEEEEeccccccccc------cccccCC-----ccchHHHHHHHHHHH
Confidence            11        11112  479999999999999999944322111000      0000000     001112245688899


Q ss_pred             HhCCCCeeEEeecC
Q 035738          310 TGAGFSGISCERAI  323 (333)
Q Consensus       310 ~~aGf~~~~~~~~~  323 (333)
                      +++||++.++....
T Consensus       172 ~~aGf~i~~~~~~~  185 (218)
T 3mq2_A          172 AEAGWKLADCRYLE  185 (218)
T ss_dssp             HHTTEEEEEEEEEC
T ss_pred             HHcCCCceeeeccc
Confidence            99999998876553

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.15  E-value=3.8e-11  Score=105.27  Aligned_cols=77  Identities=16%  Similarity=0.169  Sum_probs=64.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCCCe-----------------------EEEccCChhH
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHPCM-----------------------WILHDWNDEH  245 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~gv-----------------------~vLh~~~~~~  245 (333)
                      ...+|||||||+|.++..+++.+  .+++++|+ +.+++.|++.+++                       .++|.++.+ 
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~-  115 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD-  115 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH-
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH-
Confidence            45789999999999999999877  47899999 8999999876543                       667777543 


Q ss_pred             HHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738          246 CLKLLKNCYKSIPEDGKVIAVELMLP  271 (333)
Q Consensus       246 ~~~lL~~~~~~L~pgG~l~i~e~~~~  271 (333)
                        +.+++++++|||||+|++.....+
T Consensus       116 --~~~~e~~rvLkpgG~l~~~~~~~~  139 (257)
T 4hg2_A          116 --RFWAELRRVARPGAVFAAVTYGLT  139 (257)
T ss_dssp             --HHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             --HHHHHHHHHcCCCCEEEEEECCCC
Confidence              689999999999999999887543

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.13  E-value=1.8e-10  Score=100.85  Aligned_cols=121  Identities=17%  Similarity=0.183  Sum_probs=85.0

Q ss_pred             CCCeEEEEcCCc---cHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----C--C-------------------------
Q 035738          190 NIKQLVDVGGGI---GVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----P--C-------------------------  234 (333)
Q Consensus       190 ~~~~vlDVGgG~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~--g-------------------------  234 (333)
                      +..+|||||||+   |.....+.+.+|+.+++++|. |.|++.+++.    +  +                         
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D  157 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD  157 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence            568999999997   344444455789999999999 8999888642    0  0                         


Q ss_pred             ------e---EEEccCChhH-HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHH
Q 035738          235 ------M---WILHDWNDEH-CLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHE  304 (333)
Q Consensus       235 ------v---~vLh~~~~~~-~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e  304 (333)
                            |   .+||++++++ ...+|++++++|+|||+|++.+...+..+.     ......+.+... ......||.+|
T Consensus       158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~-----~~~~~~~~~~~~-g~p~~~rs~~e  231 (277)
T 3giw_A          158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQ-----EVGRVAREYAAR-NMPMRLRTHAE  231 (277)
T ss_dssp             TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHH-----HHHHHHHHHHHT-TCCCCCCCHHH
T ss_pred             cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHH-----HHHHHHHHHHhc-CCCCccCCHHH
Confidence                  1   5689998875 468999999999999999999987553211     011112222111 11245689999


Q ss_pred             HHHHHHhCCCCeeE
Q 035738          305 FMTLATGAGFSGIS  318 (333)
Q Consensus       305 ~~~ll~~aGf~~~~  318 (333)
                      +.++|.  ||+.++
T Consensus       232 i~~~f~--Glelve  243 (277)
T 3giw_A          232 AEEFFE--GLELVE  243 (277)
T ss_dssp             HHHTTT--TSEECT
T ss_pred             HHHHhC--CCcccC
Confidence            999994  998654

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.12  E-value=2e-11  Score=103.16  Aligned_cols=131  Identities=9%  Similarity=-0.062  Sum_probs=85.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----C----------------C-e------EEE
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----P----------------C-M------WIL  238 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~----------------g-v------~vL  238 (333)
                      ..+..+|||||||+|..+..++.. ++.+++++|+ +.+++.+++.     +                + .      .++
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   99 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI   99 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence            445789999999999985555543 5679999999 7777765421     0                1 0      467


Q ss_pred             ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeE
Q 035738          239 HDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGIS  318 (333)
Q Consensus       239 h~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~  318 (333)
                      |+++.++..++|++++++|+|||++++.+...++.............+..........+..++.+++.++|.++||...+
T Consensus       100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~  179 (209)
T 2p8j_A          100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE  179 (209)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred             HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeee
Confidence            88877778899999999999999999999876553211100000000000000000012456899999999999987665


Q ss_pred             E
Q 035738          319 C  319 (333)
Q Consensus       319 ~  319 (333)
                      .
T Consensus       180 ~  180 (209)
T 2p8j_A          180 D  180 (209)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.11  E-value=1.5e-11  Score=106.44  Aligned_cols=115  Identities=11%  Similarity=0.075  Sum_probs=76.2

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CCe--------------------EEEc---
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PCM--------------------WILH---  239 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~gv--------------------~vLh---  239 (333)
                      .++.+|||||||+|..+..+++..|. +++++|+ |.+++.|++.     .++                    .++.   
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~  137 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence            46789999999999999999887774 7899999 8999888652     111                    2221   


Q ss_pred             -----cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCC
Q 035738          240 -----DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGF  314 (333)
Q Consensus       240 -----~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf  314 (333)
                           ...-.+...++++++++|||||++++++........       ...++.        -.....+.+...|.++||
T Consensus       138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~-------~~~~~~--------~~~~~~~~~~~~L~eaGF  202 (236)
T 3orh_A          138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELM-------KSKYSD--------ITIMFEETQVPALLEAGF  202 (236)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHT-------TTTCSC--------HHHHHHHHTHHHHHHHTC
T ss_pred             ecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhh-------hhhhhh--------hhhhhHHHHHHHHHHcCC
Confidence                 122234458999999999999999887643221100       000110        001124567788899999


Q ss_pred             CeeEE
Q 035738          315 SGISC  319 (333)
Q Consensus       315 ~~~~~  319 (333)
                      +.+.+
T Consensus       203 ~~~~i  207 (236)
T 3orh_A          203 RRENI  207 (236)
T ss_dssp             CGGGE
T ss_pred             eEEEE
Confidence            87654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.08  E-value=5.3e-11  Score=104.72  Aligned_cols=120  Identities=12%  Similarity=-0.035  Sum_probs=79.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC-----------------------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP-----------------------------------  231 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------------------  231 (333)
                      ..+..+|||||||+|.++..++.... .+++++|+ +.+++.+++                                   
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            44668999999999987765544332 26899999 776663321                                   


Q ss_pred             ---------------CC-------Ce------EEEccC-C-hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccc
Q 035738          232 ---------------HP-------CM------WILHDW-N-DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESK  281 (333)
Q Consensus       232 ---------------~~-------gv------~vLh~~-~-~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~  281 (333)
                                     .+       ..      .+||+. + .++..++|++++++|||||++++.+....+.     .  
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-----~--  204 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-----Y--  204 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-----E--
T ss_pred             HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc-----c--
Confidence                           00       11      556653 2 2455689999999999999999997643210     0  


Q ss_pred             cccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738          282 SNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       282 ~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  322 (333)
                        ...+- .    ......+.++|.++|+++||+++++...
T Consensus       205 --~~g~~-~----~~~~~~~~~~l~~~l~~aGF~i~~~~~~  238 (263)
T 2a14_A          205 --MVGKR-E----FSCVALEKGEVEQAVLDAGFDIEQLLHS  238 (263)
T ss_dssp             --EETTE-E----EECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             --eeCCe-E----eeccccCHHHHHHHHHHCCCEEEEEeec
Confidence              00000 0    0122458999999999999999988754

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.07  E-value=4.1e-11  Score=106.85  Aligned_cols=80  Identities=14%  Similarity=0.102  Sum_probs=63.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----------------------C------C---
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----------------------P------C---  234 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------------------~------g---  234 (333)
                      ..+..+|||||||+|.++..+++..  .+++++|+ +.+++.+++.                       +      +   
T Consensus        55 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD  132 (293)
T 3thr_A           55 QHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD  132 (293)
T ss_dssp             HTTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeE
Confidence            3456899999999999999999884  48999999 7888766320                       1      1   


Q ss_pred             -e----EEEccCCh-----hHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          235 -M----WILHDWND-----EHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       235 -v----~vLh~~~~-----~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                       |    +++|++++     ++..++|++++++|+|||++++..+.
T Consensus       133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence             1    35677776     66779999999999999999988763

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.06  E-value=3.9e-10  Score=94.74  Aligned_cols=113  Identities=7%  Similarity=-0.009  Sum_probs=81.1

Q ss_pred             eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CC-------------------e--EEEccCChhH
Q 035738          193 QLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PC-------------------M--WILHDWNDEH  245 (333)
Q Consensus       193 ~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~g-------------------v--~vLh~~~~~~  245 (333)
                      +|||||||+|.++..+++.  ..+++++|+ +.+++.+++.     .+                   +  ..+.+++.++
T Consensus        32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~  109 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSL  109 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECCCCCHHH
T ss_pred             CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhhcCCHHH
Confidence            9999999999999999886  468999999 7777765431     01                   1  3334456667


Q ss_pred             HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738          246 CLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       246 ~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  322 (333)
                      ..++|++++++|+|||++++.+.......         ......    ......++.+++.++|+  ||+++++...
T Consensus       110 ~~~~l~~~~~~L~pgG~l~~~~~~~~~~~---------~~~~~~----~~~~~~~~~~~l~~~l~--Gf~v~~~~~~  171 (202)
T 2kw5_A          110 RQQLYPKVYQGLKPGGVFILEGFAPEQLQ---------YNTGGP----KDLDLLPKLETLQSELP--SLNWLIANNL  171 (202)
T ss_dssp             HHHHHHHHHTTCCSSEEEEEEEECTTTGG---------GTSCCS----SSGGGCCCHHHHHHHCS--SSCEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCcEEEEEEecccccc---------CCCCCC----CcceeecCHHHHHHHhc--CceEEEEEEE
Confidence            78999999999999999999988543310         000000    00123578999999998  9999987654

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.06  E-value=8.3e-10  Score=96.58  Aligned_cols=110  Identities=15%  Similarity=0.202  Sum_probs=84.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC--e-----------------EEEccCChh
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC--M-----------------WILHDWNDE  244 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g--v-----------------~vLh~~~~~  244 (333)
                      ..+..+|||+|||+|.++..+++..+  +++++|+ |.+++.++++   .+  +                 .|+.+...+
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~  195 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE  195 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence            34568999999999999999888765  8999999 8888776542   11  1                 334444445


Q ss_pred             HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecCC
Q 035738          245 HCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIG  324 (333)
Q Consensus       245 ~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~  324 (333)
                      ....+++++.+.|+|||++++.+....                             +.+++.++++++||+++++...++
T Consensus       196 ~~~~~l~~~~~~LkpgG~lils~~~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~~~~~  246 (254)
T 2nxc_A          196 LHAALAPRYREALVPGGRALLTGILKD-----------------------------RAPLVREAMAGAGFRPLEEAAEGE  246 (254)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTCEEEEEEEETT
T ss_pred             HHHHHHHHHHHHcCCCCEEEEEeeccC-----------------------------CHHHHHHHHHHCCCEEEEEeccCC
Confidence            567899999999999999999765321                             267889999999999999888776


Q ss_pred             ceeE
Q 035738          325 NLWV  328 (333)
Q Consensus       325 ~~~v  328 (333)
                      +..+
T Consensus       247 W~~l  250 (254)
T 2nxc_A          247 WVLL  250 (254)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            6554

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.05  E-value=2.6e-10  Score=99.59  Aligned_cols=112  Identities=8%  Similarity=-0.073  Sum_probs=82.0

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC-----------------------CCCe---------
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP-----------------------HPCM---------  235 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~gv---------  235 (333)
                      ....+|||||||+|..+..|++.  ..+++++|+ +.+++.|++                       .+++         
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            46689999999999999999987  458999999 888876531                       0111         


Q ss_pred             ---------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcC
Q 035738          236 ---------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKER  300 (333)
Q Consensus       236 ---------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~r  300 (333)
                                     .+||.+++++..+++++++++|+|||+++++....+... .                 .......
T Consensus       145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~-~-----------------~g~~~~~  206 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK-H-----------------AGPPFYV  206 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS-C-----------------CCSSCCC
T ss_pred             CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc-C-----------------CCCCCCC
Confidence                           356777877778899999999999999987765533210 0                 0001125


Q ss_pred             CHHHHHHHHHhCCCCeeEEee
Q 035738          301 TRHEFMTLATGAGFSGISCER  321 (333)
Q Consensus       301 t~~e~~~ll~~aGf~~~~~~~  321 (333)
                      +.+++.++|++ +|+++.+..
T Consensus       207 ~~~el~~~l~~-~f~v~~~~~  226 (252)
T 2gb4_A          207 PSAELKRLFGT-KCSMQCLEE  226 (252)
T ss_dssp             CHHHHHHHHTT-TEEEEEEEE
T ss_pred             CHHHHHHHhhC-CeEEEEEec
Confidence            78999999987 598877654

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.04  E-value=6.9e-11  Score=105.43  Aligned_cols=135  Identities=12%  Similarity=0.004  Sum_probs=87.4

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--------------------C----C-e------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--------------------P----C-M------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------------~----g-v------  235 (333)
                      ..+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++.                    +    + .      
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  140 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ  140 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence            456789999999999999998776 5568999999 7777655421                    0    0 0      


Q ss_pred             EEEcc--CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC--------CCCcc----------ccc-cccchhhHHHhhC
Q 035738          236 WILHD--WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEV--------PNTSI----------ESK-SNSDSDVLMMIQS  294 (333)
Q Consensus       236 ~vLh~--~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~--------~~~~~----------~~~-~~~~~d~~m~~~~  294 (333)
                      .++|+  .+.++..++|++++++|+|||++++..+....-        .....          ... ....+.+.+....
T Consensus       141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~  220 (298)
T 1ri5_A          141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSV  220 (298)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSC
T ss_pred             chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhh
Confidence            44565  456667799999999999999999988653210        00000          000 0000000000000


Q ss_pred             --CCCCcCCHHHHHHHHHhCCCCeeEEeecC
Q 035738          295 --PGGKERTRHEFMTLATGAGFSGISCERAI  323 (333)
Q Consensus       295 --~~g~~rt~~e~~~ll~~aGf~~~~~~~~~  323 (333)
                        .....++.++|.++|+++||+++++....
T Consensus       221 ~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~  251 (298)
T 1ri5_A          221 NNCIEYFVDFTRMVDGFKRLGLSLVERKGFI  251 (298)
T ss_dssp             SSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred             cCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence              01235689999999999999999987654

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.04  E-value=2.8e-10  Score=98.12  Aligned_cols=131  Identities=17%  Similarity=0.145  Sum_probs=79.0

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-C--------Ce--------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-P--------CM--------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~--------gv--------------  235 (333)
                      ..++.+.......+|||||||+|.++..+++. ...+++++|+ +.+++.+++. +        ++              
T Consensus        27 ~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  105 (232)
T 3opn_A           27 KALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPS  105 (232)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCS
T ss_pred             HHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCC
Confidence            44444542235679999999999999999987 3348999999 7787664321 1        11              


Q ss_pred             EEEcc--CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC-CCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhC
Q 035738          236 WILHD--WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEV-PNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGA  312 (333)
Q Consensus       236 ~vLh~--~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~-~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~a  312 (333)
                      .+..+  +..  ...+|++++++|+|||++++..  .+.. .............+-..       ...+.+++.++++++
T Consensus       106 ~~~~D~v~~~--l~~~l~~i~rvLkpgG~lv~~~--~p~~e~~~~~~~~~G~~~d~~~-------~~~~~~~l~~~l~~a  174 (232)
T 3opn_A          106 FTSIDVSFIS--LDLILPPLYEILEKNGEVAALI--KPQFEAGREQVGKNGIIRDPKV-------HQMTIEKVLKTATQL  174 (232)
T ss_dssp             EEEECCSSSC--GGGTHHHHHHHSCTTCEEEEEE--CHHHHSCHHHHC-CCCCCCHHH-------HHHHHHHHHHHHHHH
T ss_pred             EEEEEEEhhh--HHHHHHHHHHhccCCCEEEEEE--CcccccCHHHhCcCCeecCcch-------hHHHHHHHHHHHHHC
Confidence            00011  111  1479999999999999999853  1110 00000000000001000       112578999999999


Q ss_pred             CCCeeEEeec
Q 035738          313 GFSGISCERA  322 (333)
Q Consensus       313 Gf~~~~~~~~  322 (333)
                      ||++..+...
T Consensus       175 Gf~v~~~~~~  184 (232)
T 3opn_A          175 GFSVKGLTFS  184 (232)
T ss_dssp             TEEEEEEEEC
T ss_pred             CCEEEEEEEc
Confidence            9998888654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.02  E-value=1.7e-09  Score=94.13  Aligned_cols=86  Identities=13%  Similarity=0.232  Sum_probs=63.8

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CCe-----------------E
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PCM-----------------W  236 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~gv-----------------~  236 (333)
                      .++.... ..+..+|||||||+|.++..+++.  ..+++++|+ +.+++.+++.     .++                 .
T Consensus        32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~  108 (252)
T 1wzn_A           32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA  108 (252)
T ss_dssp             HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred             HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccE
Confidence            3444333 456689999999999999999986  568999999 8888776531     011                 1


Q ss_pred             ------EEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          237 ------ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       237 ------vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                            .++.+++++..++|++++++|+|||.+++.-+
T Consensus       109 v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~  146 (252)
T 1wzn_A          109 VTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (252)
T ss_dssp             EEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence                  23455667778999999999999999886443

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.02  E-value=9.1e-10  Score=93.02  Aligned_cols=116  Identities=12%  Similarity=0.086  Sum_probs=73.3

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCC-----Ce------------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHP-----CM------------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-----gv------------------  235 (333)
                      .+++.+....+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++++.     ++                  
T Consensus        20 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   99 (215)
T 4dzr_A           20 EAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERG   99 (215)
T ss_dssp             HHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhcc
Confidence            4444444236778999999999999999999999999999999 88888887541     11                  


Q ss_pred             ----EEEc-----------cCChhHH------------------HHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccccc
Q 035738          236 ----WILH-----------DWNDEHC------------------LKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKS  282 (333)
Q Consensus       236 ----~vLh-----------~~~~~~~------------------~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~  282 (333)
                          .|+.           .++++..                  .++++++++.|+|||++++++...            
T Consensus       100 ~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------  167 (215)
T 4dzr_A          100 RPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH------------  167 (215)
T ss_dssp             CCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT------------
T ss_pred             CcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC------------
Confidence                2222           1111111                  578888889999999966665410            


Q ss_pred             ccchhhHHHhhCCCCCcCCHHHHHHHHH--hCCCCeeEEeecCC
Q 035738          283 NSDSDVLMMIQSPGGKERTRHEFMTLAT--GAGFSGISCERAIG  324 (333)
Q Consensus       283 ~~~~d~~m~~~~~~g~~rt~~e~~~ll~--~aGf~~~~~~~~~~  324 (333)
                                       ...+++.++++  ++||..+++.....
T Consensus       168 -----------------~~~~~~~~~l~~~~~gf~~~~~~~~~~  194 (215)
T 4dzr_A          168 -----------------NQADEVARLFAPWRERGFRVRKVKDLR  194 (215)
T ss_dssp             -----------------SCHHHHHHHTGGGGGGTEECCEEECTT
T ss_pred             -----------------ccHHHHHHHHHHhhcCCceEEEEEecC
Confidence                             12567788888  89998888876643

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.02  E-value=7.3e-11  Score=105.19  Aligned_cols=118  Identities=11%  Similarity=0.098  Sum_probs=78.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC-------------------------------------
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP-------------------------------------  231 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------------------------------  231 (333)
                      ...+|||||||+|.+ ..++...+..+++++|+ +.+++.+++                                     
T Consensus        71 ~~~~vLDiGcG~G~~-~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           71 SGRTLIDIGSGPTVY-QLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             CCSEEEEETCTTCCG-GGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChH-HHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            567999999999994 34444445569999999 777753211                                     


Q ss_pred             -------------CC--------C-e------EEEccCCh--hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccc
Q 035738          232 -------------HP--------C-M------WILHDWND--EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESK  281 (333)
Q Consensus       232 -------------~~--------g-v------~vLh~~~~--~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~  281 (333)
                                   .+        + .      .+||+.++  ++..++|++++++|+|||+|++.+.....     ..  
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~-----~~--  222 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES-----WY--  222 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC-----EE--
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcc-----eE--
Confidence                         11        1 2      55565332  25568999999999999999998754221     00  


Q ss_pred             cccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738          282 SNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       282 ~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  322 (333)
                        ...+.     ......++.++|.++|+++||+++++...
T Consensus       223 --~~~~~-----~~~~~~~~~~~l~~~l~~aGf~~~~~~~~  256 (289)
T 2g72_A          223 --LAGEA-----RLTVVPVSEEEVREALVRSGYKVRDLRTY  256 (289)
T ss_dssp             --EETTE-----EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             --EcCCe-----eeeeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence              00000     00123468999999999999999887654

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.01  E-value=5.7e-10  Score=99.85  Aligned_cols=122  Identities=19%  Similarity=0.218  Sum_probs=80.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC------------------------C------C-
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH------------------------P------C-  234 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------------------------~------g-  234 (333)
                      ..+..+|||||||+|..+..+++.+ +..+++++|+ +.+++.+++.                        .      + 
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  113 (299)
T 3g5t_A           34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK  113 (299)
T ss_dssp             CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence            3467899999999999999999987 8899999999 7787765321                        1      1 


Q ss_pred             e------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhh-CCCC--CcCCHHHH
Q 035738          235 M------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQ-SPGG--KERTRHEF  305 (333)
Q Consensus       235 v------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~-~~~g--~~rt~~e~  305 (333)
                      +      .++|++ +.  .++|++++++|+|||.+++.+...+.....+   .....+.-..... ..+.  .....+.+
T Consensus       114 fD~V~~~~~l~~~-~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~w~~p~~~~~  187 (299)
T 3g5t_A          114 IDMITAVECAHWF-DF--EKFQRSAYANLRKDGTIAIWGYADPIFPDYP---EFDDLMIEVPYGKQGLGPYWEQPGRSRL  187 (299)
T ss_dssp             EEEEEEESCGGGS-CH--HHHHHHHHHHEEEEEEEEEEEEEEEECTTCG---GGTTHHHHHHHCTTTTGGGSCTTHHHHH
T ss_pred             eeEEeHhhHHHHh-CH--HHHHHHHHHhcCCCcEEEEEecCCccccCcH---HHHHHHHHhccCcccccchhhchhhHHH
Confidence            1      556777 33  4899999999999999999665433211111   1111111111100 0011  11346678


Q ss_pred             HHHHHhCCCC
Q 035738          306 MTLATGAGFS  315 (333)
Q Consensus       306 ~~ll~~aGf~  315 (333)
                      .++++++||.
T Consensus       188 ~~~l~~~gfp  197 (299)
T 3g5t_A          188 RNMLKDSHLD  197 (299)
T ss_dssp             HTTTTTCCCC
T ss_pred             HHhhhccCCC
Confidence            9999999994

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.00  E-value=4.4e-10  Score=98.12  Aligned_cols=112  Identities=10%  Similarity=0.076  Sum_probs=86.5

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC------CC-e--------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH------PC-M--------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~------~g-v--------------  235 (333)
                      ..++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.++++      ++ +              
T Consensus        83 ~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  161 (255)
T 3mb5_A           83 ALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE  161 (255)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred             HHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence            34555555 677889999999999999999999 88999999999 7888777542      12 2              


Q ss_pred             ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhC
Q 035738          236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGA  312 (333)
Q Consensus       236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~a  312 (333)
                         .|+.+.++..  .+|+++.++|+|||++++..+...                             ..+++.+++++.
T Consensus       162 ~~D~v~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~l~~~  210 (255)
T 3mb5_A          162 NVDHVILDLPQPE--RVVEHAAKALKPGGFFVAYTPCSN-----------------------------QVMRLHEKLREF  210 (255)
T ss_dssp             SEEEEEECSSCGG--GGHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHHHHHHHT
T ss_pred             CcCEEEECCCCHH--HHHHHHHHHcCCCCEEEEEECCHH-----------------------------HHHHHHHHHHHc
Confidence               5566666654  799999999999999999764211                             145678888999


Q ss_pred             C--CCeeEEeec
Q 035738          313 G--FSGISCERA  322 (333)
Q Consensus       313 G--f~~~~~~~~  322 (333)
                      |  |..+++...
T Consensus       211 g~~f~~~~~~e~  222 (255)
T 3mb5_A          211 KDYFMKPRTINV  222 (255)
T ss_dssp             GGGBSCCEEECC
T ss_pred             CCCccccEEEEE
Confidence            9  988877644

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.99  E-value=2.5e-10  Score=99.97  Aligned_cols=121  Identities=12%  Similarity=-0.033  Sum_probs=83.1

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC-----------------------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP-----------------------------------  231 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------------------  231 (333)
                      ..+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++                                   
T Consensus        54 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           54 AVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             SCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             ccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            34668999999999999998888766 57999999 777665411                                   


Q ss_pred             ------C------------C---C-e------EEEccCC--hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccc
Q 035738          232 ------H------------P---C-M------WILHDWN--DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESK  281 (333)
Q Consensus       232 ------~------------~---g-v------~vLh~~~--~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~  281 (333)
                            .            +   + .      .+||..+  .++..++|++++++|+|||++++.+....+     ..  
T Consensus       133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-----~~--  205 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS-----YY--  205 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC-----EE--
T ss_pred             hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc-----eE--
Confidence                  0            1   1 1      4445322  225568999999999999999999854321     00  


Q ss_pred             cccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecC
Q 035738          282 SNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAI  323 (333)
Q Consensus       282 ~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~  323 (333)
                        ...+..     ......+.++|.++|+++||+++++....
T Consensus       206 --~~~~~~-----~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  240 (265)
T 2i62_A          206 --MIGEQK-----FSSLPLGWETVRDAVEEAGYTIEQFEVIS  240 (265)
T ss_dssp             --EETTEE-----EECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             --EcCCcc-----ccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence              000000     01234578999999999999999887653

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.99  E-value=5.5e-10  Score=99.22  Aligned_cols=120  Identities=13%  Similarity=0.123  Sum_probs=86.6

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---C--Ce------------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---P--CM------------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--gv------------------  235 (333)
                      .+++.++ .....+|||||||+|.++..+++.  ..+++++|+ +.+++.+++.   .  ++                  
T Consensus       111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~  187 (286)
T 3m70_A          111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDF  187 (286)
T ss_dssp             HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEE
T ss_pred             HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccE
Confidence            3444444 346789999999999999999988  458999999 7888766532   0  11                  


Q ss_pred             ----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHh
Q 035738          236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATG  311 (333)
Q Consensus       236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~  311 (333)
                          .++|+++++....+|+++++.|+|||.++++.....+....+                ......++.+++.++++.
T Consensus       188 i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~  251 (286)
T 3m70_A          188 IVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------LPFSFTFAENELKEYYKD  251 (286)
T ss_dssp             EEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------SCCSCCBCTTHHHHHTTT
T ss_pred             EEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------CCccccCCHHHHHHHhcC
Confidence                677888888888999999999999999888777554321110                011234567889999855


Q ss_pred             CCCCeeEEe
Q 035738          312 AGFSGISCE  320 (333)
Q Consensus       312 aGf~~~~~~  320 (333)
                        |++++..
T Consensus       252 --~~~~~~~  258 (286)
T 3m70_A          252 --WEFLEYN  258 (286)
T ss_dssp             --SEEEEEE
T ss_pred             --CEEEEEE
Confidence              8877764

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.98  E-value=2.7e-09  Score=94.54  Aligned_cols=133  Identities=14%  Similarity=0.092  Sum_probs=80.5

Q ss_pred             HHHhhccCCC-CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhC-CCCCC---------------------e
Q 035738          180 NILESYKGFD-NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHV-PPHPC---------------------M  235 (333)
Q Consensus       180 ~~~~~~~~~~-~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~~~~g---------------------v  235 (333)
                      .+++.+. .+ ...+|||||||||.++..+++. +..+++++|+ +.+++.+ ++.+.                     +
T Consensus        75 ~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~f  152 (291)
T 3hp7_A           75 KALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLP  152 (291)
T ss_dssp             HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCC
T ss_pred             HHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCC
Confidence            4455554 43 5679999999999999988886 5568999999 7777652 21111                     1


Q ss_pred             -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC-CCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCC
Q 035738          236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEV-PNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAG  313 (333)
Q Consensus       236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~-~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aG  313 (333)
                       .+..+.+-.....+|++++++|+|||+++++-  .|.- .............|-.       ...+..+++.++++++|
T Consensus       153 D~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~lv--kPqfe~~~~~~~~~G~vrd~~-------~~~~~~~~v~~~~~~~G  223 (291)
T 3hp7_A          153 SFASIDVSFISLNLILPALAKILVDGGQVVALV--KPQFEAGREQIGKNGIVRESS-------IHEKVLETVTAFAVDYG  223 (291)
T ss_dssp             SEEEECCSSSCGGGTHHHHHHHSCTTCEEEEEE--CGGGTSCGGGCC-CCCCCCHH-------HHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEEE--CcccccChhhcCCCCccCCHH-------HHHHHHHHHHHHHHHCC
Confidence             12222211112479999999999999999872  1210 0000000000000000       01225788999999999


Q ss_pred             CCeeEEeecC
Q 035738          314 FSGISCERAI  323 (333)
Q Consensus       314 f~~~~~~~~~  323 (333)
                      |++..+...+
T Consensus       224 f~v~~~~~sp  233 (291)
T 3hp7_A          224 FSVKGLDFSP  233 (291)
T ss_dssp             EEEEEEEECS
T ss_pred             CEEEEEEECC
Confidence            9988877643

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.96  E-value=1.1e-10  Score=99.27  Aligned_cols=80  Identities=13%  Similarity=0.175  Sum_probs=64.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CCe----------------------EEEcc
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PCM----------------------WILHD  240 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~gv----------------------~vLh~  240 (333)
                      ..+..+|||||||+|.++..+++..  .+++++|+ +.+++.+++.    +++                      .++|+
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  126 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY  126 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence            5567899999999999999999886  47999999 7887766432    111                      66778


Q ss_pred             CCh-hHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          241 WND-EHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       241 ~~~-~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                      +++ +...++|+++++.|+|||++++..+.
T Consensus       127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  156 (216)
T 3ofk_A          127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSAR  156 (216)
T ss_dssp             SSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            876 45568999999999999999998773

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.95  E-value=2.8e-09  Score=88.41  Aligned_cols=121  Identities=15%  Similarity=0.210  Sum_probs=87.1

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC--e---------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC--M---------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g--v---------------  235 (333)
                      .+++.+. ..+..+|||||||+|.++..+++.  ..+++++|+ +.+++.++++      .+  +               
T Consensus        43 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  119 (194)
T 1dus_A           43 ILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK  119 (194)
T ss_dssp             HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred             HHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCC
Confidence            4455555 557789999999999999999988  678999999 7777665432      11  2               


Q ss_pred             --EEEcc----CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHH
Q 035738          236 --WILHD----WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLA  309 (333)
Q Consensus       236 --~vLh~----~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll  309 (333)
                        .|+.+    +..+....+++++.+.|+|||++++.......                             ..++.+++
T Consensus       120 ~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~-----------------------------~~~~~~~l  170 (194)
T 1dus_A          120 YNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQG-----------------------------AKSLAKYM  170 (194)
T ss_dssp             EEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHH-----------------------------HHHHHHHH
T ss_pred             ceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCC-----------------------------hHHHHHHH
Confidence              22222    12455678999999999999999999873210                             23567777


Q ss_pred             HhCCCCeeEEeecCCceeEEEEeC
Q 035738          310 TGAGFSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       310 ~~aGf~~~~~~~~~~~~~vie~~~  333 (333)
                      ++. |..+++.....++.++.+.|
T Consensus       171 ~~~-~~~~~~~~~~~~~~~~~~~k  193 (194)
T 1dus_A          171 KDV-FGNVETVTIKGGYRVLKSKK  193 (194)
T ss_dssp             HHH-HSCCEEEEEETTEEEEEEEC
T ss_pred             HHH-hcceEEEecCCcEEEEEEee
Confidence            777 67778877777777777665

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.94  E-value=3.9e-10  Score=99.80  Aligned_cols=110  Identities=8%  Similarity=0.007  Sum_probs=79.6

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC-------CCe---------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH-------PCM---------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~gv---------------  235 (333)
                      .++..++ ..+..+|||+|||+|..+..+++. +|..+++++|+ +.+++.++++       .++               
T Consensus       101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~  179 (275)
T 1yb2_A          101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM  179 (275)
T ss_dssp             -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred             HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence            4445454 667889999999999999999998 78899999999 7777655321       111               


Q ss_pred             --EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCC
Q 035738          236 --WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAG  313 (333)
Q Consensus       236 --~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aG  313 (333)
                        .|+.++++..  ++|+++.+.|+|||++++..+...                             ..+++.++++++|
T Consensus       180 fD~Vi~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~-----------------------------~~~~~~~~l~~~G  228 (275)
T 1yb2_A          180 YDAVIADIPDPW--NHVQKIASMMKPGSVATFYLPNFD-----------------------------QSEKTVLSLSASG  228 (275)
T ss_dssp             EEEEEECCSCGG--GSHHHHHHTEEEEEEEEEEESSHH-----------------------------HHHHHHHHSGGGT
T ss_pred             ccEEEEcCcCHH--HHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHHHHHHCC
Confidence              4445566554  899999999999999999875210                             1346677778889


Q ss_pred             CCeeEEee
Q 035738          314 FSGISCER  321 (333)
Q Consensus       314 f~~~~~~~  321 (333)
                      |+.+++..
T Consensus       229 f~~~~~~~  236 (275)
T 1yb2_A          229 MHHLETVE  236 (275)
T ss_dssp             EEEEEEEE
T ss_pred             CeEEEEEE
Confidence            88877765

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.94  E-value=5.1e-09  Score=88.85  Aligned_cols=80  Identities=15%  Similarity=0.133  Sum_probs=58.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHh----hhCCCCCC--------------------e-EEEccC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVI----EHVPPHPC--------------------M-WILHDW  241 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~----~~a~~~~g--------------------v-~vLh~~  241 (333)
                      ..+..+|||||||+|..+..+++..++.+++++|+ +.++    +.+++..+                    . .|+.+.
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~  134 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI  134 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec
Confidence            55678999999999999999999988779999999 6543    33321111                    1 334444


Q ss_pred             Chh-HHHHHHHHHHHhCCCCcEEEEEe
Q 035738          242 NDE-HCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       242 ~~~-~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      .++ +...+|+++++.|||||++++.-
T Consensus       135 ~~~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          135 AQKNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence            333 33456999999999999999984

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.93  E-value=7.5e-09  Score=88.62  Aligned_cols=124  Identities=14%  Similarity=0.052  Sum_probs=81.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhC----CCCCCe---------------------EEEcc
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHV----PPHPCM---------------------WILHD  240 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a----~~~~gv---------------------~vLh~  240 (333)
                      ..+..+|||+|||+|.++..+++.. |..+++++|. +.+++.+    +..+++                     .|+++
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~  150 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED  150 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence            5567899999999999999999885 6689999999 7554433    222111                     45555


Q ss_pred             CChhHH-HHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEE
Q 035738          241 WNDEHC-LKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISC  319 (333)
Q Consensus       241 ~~~~~~-~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~  319 (333)
                      .+.++. ..+++++++.|+|||++++. .........         ....         ....+++.++ +++ |+.++.
T Consensus       151 ~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~---------~~~~---------~~~~~~l~~l-~~~-f~~~~~  209 (227)
T 1g8a_A          151 VAQPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVT---------KEPE---------QVFREVEREL-SEY-FEVIER  209 (227)
T ss_dssp             CCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTT---------SCHH---------HHHHHHHHHH-HTT-SEEEEE
T ss_pred             CCCHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCC---------CChh---------hhhHHHHHHH-Hhh-ceeeeE
Confidence            543333 34599999999999999998 322111000         0000         1125677777 777 999998


Q ss_pred             eecCCc---eeEEEEe
Q 035738          320 ERAIGN---LWVMEFY  332 (333)
Q Consensus       320 ~~~~~~---~~vie~~  332 (333)
                      .....+   +..+.++
T Consensus       210 ~~~~~~~~~~~~~~~~  225 (227)
T 1g8a_A          210 LNLEPYEKDHALFVVR  225 (227)
T ss_dssp             EECTTTSSSEEEEEEE
T ss_pred             eccCcccCCCEEEEEE
Confidence            877544   5555444

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.93  E-value=8.7e-09  Score=84.31  Aligned_cols=101  Identities=12%  Similarity=0.158  Sum_probs=73.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CC---------e-EE-----EccCChh-----
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PC---------M-WI-----LHDWNDE-----  244 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~g---------v-~v-----Lh~~~~~-----  244 (333)
                      +..+|||||||+|.++..+++..   +++++|+ +.+++.....    .+         . .|     +|..++.     
T Consensus        23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~~~~   99 (170)
T 3q87_B           23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALESHRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPIIGG   99 (170)
T ss_dssp             CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHTCSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTTTBC
T ss_pred             CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhcccCCeEEECChhhhcccCCCCEEEECCCCccCCccccccC
Confidence            45699999999999999999987   8999999 7888762211    00         0 22     2222222     


Q ss_pred             --HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738          245 --HCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       245 --~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  322 (333)
                        +...+++++.+.+ |||++++.+...                             .+.+++.++++++||+.+++...
T Consensus       100 ~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l~~~l~~~gf~~~~~~~~  149 (170)
T 3q87_B          100 GYLGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEVLARLEERGYGTRILKVR  149 (170)
T ss_dssp             CGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CcchHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHHHHHHHHCCCcEEEEEee
Confidence              3357889999999 999999988521                             13678899999999999888765


Q ss_pred             C
Q 035738          323 I  323 (333)
Q Consensus       323 ~  323 (333)
                      .
T Consensus       150 ~  150 (170)
T 3q87_B          150 K  150 (170)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.92  E-value=2.5e-09  Score=90.81  Aligned_cols=78  Identities=21%  Similarity=0.375  Sum_probs=60.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe--------------------EEEccCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM--------------------WILHDWN  242 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv--------------------~vLh~~~  242 (333)
                      ...+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++      .++                    .|+.+++
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~  120 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  120 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence            457899999999999999999999999999999 7887766531      111                    3333444


Q ss_pred             hh-----------HHHHHHHHHHHhCCCCcEEEEEe
Q 035738          243 DE-----------HCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       243 ~~-----------~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      ++           ....+|+++.++|+|||.+++..
T Consensus       121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  156 (214)
T 1yzh_A          121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  156 (214)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence            32           11479999999999999988854

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.91  E-value=1e-09  Score=94.59  Aligned_cols=116  Identities=9%  Similarity=0.060  Sum_probs=75.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhH----hhhCCCCCCe---------------------EEEcc
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHV----IEHVPPHPCM---------------------WILHD  240 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~~gv---------------------~vLh~  240 (333)
                      +....+|||+|||+|.++..+++.+ |..+++++|+ +.+    ++.++.++++                     .|+.+
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~  154 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD  154 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence            5677899999999999999999986 7789999999 553    3333221111                     34444


Q ss_pred             CC-hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEE
Q 035738          241 WN-DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISC  319 (333)
Q Consensus       241 ~~-~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~  319 (333)
                      .+ .+....+++++.+.|+|||++++. .........       .  .....         -..+ .++|+++||+++++
T Consensus       155 ~~~~~~~~~~~~~~~~~LkpgG~l~i~-~~~~~~~~~-------~--~~~~~---------~~~~-~~~l~~~Gf~~~~~  214 (233)
T 2ipx_A          155 VAQPDQTRIVALNAHTFLRNGGHFVIS-IKANCIDST-------A--SAEAV---------FASE-VKKMQQENMKPQEQ  214 (233)
T ss_dssp             CCCTTHHHHHHHHHHHHEEEEEEEEEE-EEHHHHCSS-------S--CHHHH---------HHHH-HHTTGGGTEEEEEE
T ss_pred             CCCccHHHHHHHHHHHHcCCCeEEEEE-EcccccccC-------C--CHHHH---------HHHH-HHHHHHCCCceEEE
Confidence            43 334456799999999999999993 321100000       0  00000         0123 58899999999997


Q ss_pred             eecC
Q 035738          320 ERAI  323 (333)
Q Consensus       320 ~~~~  323 (333)
                      ....
T Consensus       215 ~~~~  218 (233)
T 2ipx_A          215 LTLE  218 (233)
T ss_dssp             EECT
T ss_pred             EecC
Confidence            7664

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.91  E-value=1.3e-08  Score=90.02  Aligned_cols=121  Identities=14%  Similarity=0.150  Sum_probs=85.8

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------  235 (333)
                      .+++.++  .+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.++++      +++                 
T Consensus       101 ~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD  178 (276)
T 2b3t_A          101 QALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFA  178 (276)
T ss_dssp             HHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEE
T ss_pred             HHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCcc
Confidence            4444432  3567999999999999999999999999999999 7888766542      112                 


Q ss_pred             EEEcc------------------CCh----------hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchh
Q 035738          236 WILHD------------------WND----------EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSD  287 (333)
Q Consensus       236 ~vLh~------------------~~~----------~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d  287 (333)
                      .|+.+                  .+.          ....++++++.+.|+|||++++...                   
T Consensus       179 ~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~-------------------  239 (276)
T 2b3t_A          179 MIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG-------------------  239 (276)
T ss_dssp             EEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-------------------
T ss_pred             EEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-------------------
Confidence            22222                  110          2346899999999999999887521                   


Q ss_pred             hHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeec-CCceeEEEEe
Q 035738          288 VLMMIQSPGGKERTRHEFMTLATGAGFSGISCERA-IGNLWVMEFY  332 (333)
Q Consensus       288 ~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~vie~~  332 (333)
                                 ..+.+++.++++++||+.+++..- .+..-++.++
T Consensus       240 -----------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~  274 (276)
T 2b3t_A          240 -----------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR  274 (276)
T ss_dssp             -----------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred             -----------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEE
Confidence                       113678999999999998888764 3444455444

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.90  E-value=6.9e-09  Score=89.14  Aligned_cols=116  Identities=15%  Similarity=0.125  Sum_probs=75.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHh----hhCCCCCC--------------------e-EEEcc
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVI----EHVPPHPC--------------------M-WILHD  240 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~----~~a~~~~g--------------------v-~vLh~  240 (333)
                      +.+..+|||+|||+|.++..+++. .|+.+++++|+ +.++    +.+++.++                    + .|+.+
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d  153 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD  153 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence            667899999999999999999886 56889999999 7653    22321111                    1 66677


Q ss_pred             CChhHHHHHH-HHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEE
Q 035738          241 WNDEHCLKLL-KNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISC  319 (333)
Q Consensus       241 ~~~~~~~~lL-~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~  319 (333)
                      .+.++..++| +.+.+.|+|||++++.......              |..     .+-.+ ..++..+.|+++||++.++
T Consensus       154 ~a~~~~~~il~~~~~~~LkpGG~lvisik~~~~--------------d~t-----~~~~e-~~~~~~~~L~~~gf~~~~~  213 (232)
T 3id6_C          154 IAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSI--------------DVT-----KDPKE-IYKTEVEKLENSNFETIQI  213 (232)
T ss_dssp             CCCTTHHHHHHHHHHHHEEEEEEEEEEEC--------------------------CCSSS-STTHHHHHHHHTTEEEEEE
T ss_pred             CCChhHHHHHHHHHHHhCCCCeEEEEEEccCCc--------------ccC-----CCHHH-HHHHHHHHHHHCCCEEEEE
Confidence            6654444554 5566699999999998432111              100     01111 1234456778899999998


Q ss_pred             eecC
Q 035738          320 ERAI  323 (333)
Q Consensus       320 ~~~~  323 (333)
                      ....
T Consensus       214 ~~l~  217 (232)
T 3id6_C          214 INLD  217 (232)
T ss_dssp             EECT
T ss_pred             eccC
Confidence            8774

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.89  E-value=5.2e-10  Score=96.60  Aligned_cols=80  Identities=10%  Similarity=0.164  Sum_probs=59.1

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CCe--------------------EE-----
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PCM--------------------WI-----  237 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~gv--------------------~v-----  237 (333)
                      ....+|||||||+|.++..+++..+ .+++++|+ +.+++.+++.     .++                    .|     
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~  137 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence            4567999999999999999966444 38999999 8888776542     111                    22     


Q ss_pred             ---EccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          238 ---LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       238 ---Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                         .+++.......+|++++++|||||++++++..
T Consensus       138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence               22333334457899999999999999998764

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.88  E-value=2.6e-09  Score=90.31  Aligned_cols=112  Identities=13%  Similarity=0.081  Sum_probs=75.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCC-eEEEeec-hhHhhhCCCC--------------C---C---e----EEEccCCh
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYI-KGINFDL-PHVIEHVPPH--------------P---C---M----WILHDWND  243 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~--------------~---g---v----~vLh~~~~  243 (333)
                      +..+|||||||+|.++..+     .. +++++|+ +.+++.+++.              +   +   +    .++|++++
T Consensus        36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  110 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED  110 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred             CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence            6789999999999999887     45 8999999 7777765431              0   0   1    56677775


Q ss_pred             hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhH-HHh--hCCCCCcCCHHHHHHHHHhCCCCeeEEe
Q 035738          244 EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVL-MMI--QSPGGKERTRHEFMTLATGAGFSGISCE  320 (333)
Q Consensus       244 ~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~-m~~--~~~~g~~rt~~e~~~ll~~aGf~~~~~~  320 (333)
                      ..  ++|++++++|+|||++++.++.....    +.    ...... ...  .......++.++++++|+  |  .+++.
T Consensus       111 ~~--~~l~~~~~~L~pgG~l~i~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G--~~~~~  176 (211)
T 2gs9_A          111 VE--RVLLEARRVLRPGGALVVGVLEALSP----WA----ALYRRLGEKGVLPWAQARFLAREDLKALLG--P--PEAEG  176 (211)
T ss_dssp             HH--HHHHHHHHHEEEEEEEEEEEECTTSH----HH----HHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S--CSEEE
T ss_pred             HH--HHHHHHHHHcCCCCEEEEEecCCcCc----HH----HHHHHHhhccCccccccccCCHHHHHHHhc--C--cceeE
Confidence            54  89999999999999999998743221    00    000000 000  001234579999999998  7  44443

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.87  E-value=6.4e-09  Score=95.70  Aligned_cols=96  Identities=14%  Similarity=0.251  Sum_probs=71.6

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC---------------CCCe------
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP---------------HPCM------  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~gv------  235 (333)
                      ...+++.+. .....+|||||||+|..+..++..++..+++++|+ +.+++.|++               ...+      
T Consensus       162 i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD  240 (438)
T 3uwp_A          162 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  240 (438)
T ss_dssp             HHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence            345666665 77889999999999999999999888777999999 666655532               0111      


Q ss_pred             --------------EEEc---cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCC
Q 035738          236 --------------WILH---DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPN  275 (333)
Q Consensus       236 --------------~vLh---~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~  275 (333)
                                    .|+.   .+ .++..+.|+++++.|+|||+|++.|.+.+++..
T Consensus       241 ~~~lp~~d~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~~  296 (438)
T 3uwp_A          241 FLSEEWRERIANTSVIFVNNFAF-GPEVDHQLKERFANMKEGGRIVSSKPFAPLNFR  296 (438)
T ss_dssp             TTSHHHHHHHHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTTCEEEESSCSSCTTCC
T ss_pred             ccCCccccccCCccEEEEccccc-CchHHHHHHHHHHcCCCCcEEEEeecccCCCCC
Confidence                          2221   12 244567889999999999999999999887643

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.87  E-value=3.2e-09  Score=92.83  Aligned_cols=87  Identities=9%  Similarity=0.091  Sum_probs=69.2

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--------------C----------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--------------P----------  233 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~----------  233 (333)
                      ..+++.++ ..+..+|||||||+|.++..++++.  .+++++|+ +.+++.++++              .          
T Consensus        35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~g--~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~f  111 (261)
T 3iv6_A           35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALERG--ASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHF  111 (261)
T ss_dssp             HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCC
T ss_pred             HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCc
Confidence            45555555 6778899999999999999999874  58999999 8888766431              1          


Q ss_pred             Ce----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          234 CM----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       234 gv----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                      ++    .++|+++.++...+|++++++| |||++++....
T Consensus       112 D~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          112 DFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             cEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence            01    5678888888889999999999 99999987653

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.86  E-value=4.7e-09  Score=86.05  Aligned_cols=86  Identities=16%  Similarity=0.269  Sum_probs=63.7

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C-Ce-----------------
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P-CM-----------------  235 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-gv-----------------  235 (333)
                      ++..+. ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.++++      + ++                 
T Consensus        17 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   95 (178)
T 3hm2_A           17 AISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNP   95 (178)
T ss_dssp             HHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCC
T ss_pred             HHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCC
Confidence            444444 66778999999999999999999999999999999 7788776532      1 22                 


Q ss_pred             -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                       .|+....-.. ..+++++.+.|+|||++++.+.
T Consensus        96 D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A           96 DVIFIGGGLTA-PGVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             SEEEECC-TTC-TTHHHHHHHTCCTTCEEEEEEC
T ss_pred             CEEEECCcccH-HHHHHHHHHhcCCCCEEEEEee
Confidence             1111111111 4699999999999999998775

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.86  E-value=6.9e-09  Score=90.31  Aligned_cols=84  Identities=11%  Similarity=0.130  Sum_probs=66.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------C-Ce---------------------EE
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------P-CM---------------------WI  237 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~-gv---------------------~v  237 (333)
                      ..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.++++      . ++                     .|
T Consensus        61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V  140 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI  140 (248)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred             hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence            44678999999999999999999998 899999999 8888776542      1 12                     44


Q ss_pred             EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738          238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLP  271 (333)
Q Consensus       238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~  271 (333)
                      +.+.+......+|+++.+.|+|||+|++.+....
T Consensus       141 ~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~  174 (248)
T 3tfw_A          141 FIDADKPNNPHYLRWALRYSRPGTLIIGDNVVRD  174 (248)
T ss_dssp             EECSCGGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred             EECCchHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence            4455555667899999999999999888766443

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.86  E-value=1e-08  Score=86.55  Aligned_cols=106  Identities=15%  Similarity=0.164  Sum_probs=76.9

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C-Ce-----------------
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P-CM-----------------  235 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-gv-----------------  235 (333)
                      ++..+. .....+|||||||+|.++..+++.  ..+++++|+ +.+++.++++      + ++                 
T Consensus        47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~  123 (204)
T 3njr_A           47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP  123 (204)
T ss_dssp             HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred             HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence            344444 667789999999999999999988  778999999 8888776542      2 22                 


Q ss_pred             -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCC
Q 035738          236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGF  314 (333)
Q Consensus       236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf  314 (333)
                       .++.....+ .. +++++.+.|+|||++++......                             +.+++.+++++.||
T Consensus       124 D~v~~~~~~~-~~-~l~~~~~~LkpgG~lv~~~~~~~-----------------------------~~~~~~~~l~~~g~  172 (204)
T 3njr_A          124 EAVFIGGGGS-QA-LYDRLWEWLAPGTRIVANAVTLE-----------------------------SETLLTQLHARHGG  172 (204)
T ss_dssp             SEEEECSCCC-HH-HHHHHHHHSCTTCEEEEEECSHH-----------------------------HHHHHHHHHHHHCS
T ss_pred             CEEEECCccc-HH-HHHHHHHhcCCCcEEEEEecCcc-----------------------------cHHHHHHHHHhCCC
Confidence             333222222 23 99999999999999988665211                             25577888899998


Q ss_pred             CeeEEe
Q 035738          315 SGISCE  320 (333)
Q Consensus       315 ~~~~~~  320 (333)
                      ++.++.
T Consensus       173 ~i~~i~  178 (204)
T 3njr_A          173 QLLRID  178 (204)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            877654

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.86  E-value=8.7e-09  Score=87.90  Aligned_cols=84  Identities=7%  Similarity=0.081  Sum_probs=65.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------CC-e-----------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------PC-M-----------------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~g-v-----------------------  235 (333)
                      ..+..+|||||||+|..+..+++++| +.+++++|+ +.+++.++++      .+ +                       
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD  135 (223)
T 3duw_A           56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD  135 (223)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred             hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence            34678999999999999999999998 789999999 8888776532      11 2                       


Q ss_pred             EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738          236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLP  271 (333)
Q Consensus       236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~  271 (333)
                      .|+.+.+.+....+++++.+.|+|||.+++.+...+
T Consensus       136 ~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  171 (223)
T 3duw_A          136 FIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVRE  171 (223)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred             EEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence            444444555667899999999999998887766543

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.86  E-value=2.6e-09  Score=88.41  Aligned_cols=113  Identities=12%  Similarity=0.094  Sum_probs=74.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-------------------EE---E
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-------------------WI---L  238 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-------------------~v---L  238 (333)
                      ..+..+|||||||+|.++..++++  ..+++++|+ +.+++.++++      .++                   .|   +
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~   97 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL   97 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence            456789999999999999999987  788999999 8888877542      111                   11   2


Q ss_pred             ccCC---------hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHH
Q 035738          239 HDWN---------DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLA  309 (333)
Q Consensus       239 h~~~---------~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll  309 (333)
                      +.++         .+...++|+++.+.|+|||++++...........                     ......+|.+.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---------------------~~~~~~~~~~~l  156 (185)
T 3mti_A           98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDM---------------------EKDAVLEYVIGL  156 (185)
T ss_dssp             C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CH---------------------HHHHHHHHHHHS
T ss_pred             CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHH---------------------HHHHHHHHHHhC
Confidence            2222         2455688999999999999999987632221000                     001134555666


Q ss_pred             HhCCCCeeEEeecC
Q 035738          310 TGAGFSGISCERAI  323 (333)
Q Consensus       310 ~~aGf~~~~~~~~~  323 (333)
                      ...+|.+.+.....
T Consensus       157 ~~~~~~~~~~~~~~  170 (185)
T 3mti_A          157 DQRVFTAMLYQPLN  170 (185)
T ss_dssp             CTTTEEEEEEEESS
T ss_pred             CCceEEEEEehhhc
Confidence            66778877776553

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.86  E-value=1.8e-09  Score=96.87  Aligned_cols=132  Identities=13%  Similarity=0.108  Sum_probs=81.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----------------------------------C
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----------------------------------P  233 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------------------------------~  233 (333)
                      ...+|||||||+|..+..++.. ...+++++|+ +.+++.|++.                                   +
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            4679999999999877766653 3468999999 7888766421                                   0


Q ss_pred             -C----e---EEEcc-CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCC----------c-c-ccccccc----hhh
Q 035738          234 -C----M---WILHD-WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNT----------S-I-ESKSNSD----SDV  288 (333)
Q Consensus       234 -g----v---~vLh~-~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~----------~-~-~~~~~~~----~d~  288 (333)
                       +    |   .++|+ +++++..++|++++++|+|||++++..+....-...          . . .+.+...    .+.
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  206 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR  206 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence             1    1   45565 344455799999999999999999887732210000          0 0 0000000    000


Q ss_pred             --HHHhh--CCCC--CcCCHHHHHHHHHhCCCCeeEEeec
Q 035738          289 --LMMIQ--SPGG--KERTRHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       289 --~m~~~--~~~g--~~rt~~e~~~ll~~aGf~~~~~~~~  322 (333)
                        .+...  +..-  ...+.+++.++++++||+++.....
T Consensus       207 ~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f  246 (302)
T 2vdw_A          207 IVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF  246 (302)
T ss_dssp             EEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred             cceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence              00000  0010  2457899999999999999888654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.85  E-value=3.9e-09  Score=92.05  Aligned_cols=111  Identities=13%  Similarity=0.096  Sum_probs=82.6

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC-------CCe--------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH-------PCM--------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~gv--------------  235 (333)
                      ..++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.++++       .++              
T Consensus        86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~  164 (258)
T 2pwy_A           86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE  164 (258)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred             HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence            34556555 778889999999999999999998 77899999998 7777655421       111              


Q ss_pred             ----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHh
Q 035738          236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATG  311 (333)
Q Consensus       236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~  311 (333)
                          .|+.++++..  ++|+++.++|+|||++++.++...                             ...++.+.+++
T Consensus       165 ~~~D~v~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~l~~  213 (258)
T 2pwy_A          165 AAYDGVALDLMEPW--KVLEKAALALKPDRFLVAYLPNIT-----------------------------QVLELVRAAEA  213 (258)
T ss_dssp             TCEEEEEEESSCGG--GGHHHHHHHEEEEEEEEEEESCHH-----------------------------HHHHHHHHHTT
T ss_pred             CCcCEEEECCcCHH--HHHHHHHHhCCCCCEEEEEeCCHH-----------------------------HHHHHHHHHHH
Confidence                4444555554  799999999999999999875210                             13466677788


Q ss_pred             CCCCeeEEee
Q 035738          312 AGFSGISCER  321 (333)
Q Consensus       312 aGf~~~~~~~  321 (333)
                      +||..+++..
T Consensus       214 ~gf~~~~~~~  223 (258)
T 2pwy_A          214 HPFRLERVLE  223 (258)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCCceEEEEE
Confidence            9998877654

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.85  E-value=4.3e-09  Score=89.49  Aligned_cols=78  Identities=18%  Similarity=0.278  Sum_probs=60.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe--------------------EEEccCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM--------------------WILHDWN  242 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv--------------------~vLh~~~  242 (333)
                      ...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++      +++                    .|+.+++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence            456899999999999999999999999999999 7888776532      222                    3333333


Q ss_pred             hhH-----------HHHHHHHHHHhCCCCcEEEEEe
Q 035738          243 DEH-----------CLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       243 ~~~-----------~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      ++.           ...+|+++.+.|+|||.+++..
T Consensus       118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t  153 (213)
T 2fca_A          118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  153 (213)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence            220           2478999999999999998864

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.82  E-value=1.7e-08  Score=83.39  Aligned_cols=104  Identities=18%  Similarity=0.223  Sum_probs=75.4

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe-----------------
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM-----------------  235 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv-----------------  235 (333)
                      ++..+. ..+..+|||+|||+|.++..+++..  .+++++|+ +.+++.++++       .++                 
T Consensus        25 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  101 (192)
T 1l3i_A           25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI  101 (192)
T ss_dssp             HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred             HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCC
Confidence            344444 6677899999999999999999887  78999999 7777766531       111                 


Q ss_pred             -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCC
Q 035738          236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGF  314 (333)
Q Consensus       236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf  314 (333)
                       .|+.....+....+++++.+.|+|||++++......                             +..++.+++++.||
T Consensus       102 D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~~~-----------------------------~~~~~~~~l~~~g~  152 (192)
T 1l3i_A          102 DIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLE-----------------------------TKFEAMECLRDLGF  152 (192)
T ss_dssp             EEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBHH-----------------------------HHHHHHHHHHHTTC
T ss_pred             CEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecCcc-----------------------------hHHHHHHHHHHCCC
Confidence             233332323456899999999999999998765210                             14578889999999


Q ss_pred             Ce
Q 035738          315 SG  316 (333)
Q Consensus       315 ~~  316 (333)
                      .+
T Consensus       153 ~~  154 (192)
T 1l3i_A          153 DV  154 (192)
T ss_dssp             CC
T ss_pred             ce
Confidence            43

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.81  E-value=6.6e-09  Score=91.91  Aligned_cols=111  Identities=14%  Similarity=0.160  Sum_probs=82.2

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC-------CCe--------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH-------PCM--------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~gv--------------  235 (333)
                      ..++..++ ..+..+|||+|||+|.++..++++ .|..+++++|+ +.+++.++++       .++              
T Consensus       102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  180 (277)
T 1o54_A          102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK  180 (277)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred             HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence            34555555 677889999999999999999999 68899999999 7787766532       111              


Q ss_pred             ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhC
Q 035738          236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGA  312 (333)
Q Consensus       236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~a  312 (333)
                         .|+.+.++..  .+|+++.++|+|||++++.++...                             ..+++.+.|+++
T Consensus       181 ~~D~V~~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~-----------------------------~~~~~~~~l~~~  229 (277)
T 1o54_A          181 DVDALFLDVPDPW--NYIDKCWEALKGGGRFATVCPTTN-----------------------------QVQETLKKLQEL  229 (277)
T ss_dssp             SEEEEEECCSCGG--GTHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHHHHHHHS
T ss_pred             ccCEEEECCcCHH--HHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHHHHHHC
Confidence               4445555554  799999999999999999875211                             134556677788


Q ss_pred             CCCeeEEee
Q 035738          313 GFSGISCER  321 (333)
Q Consensus       313 Gf~~~~~~~  321 (333)
                      ||+.+++..
T Consensus       230 gf~~~~~~~  238 (277)
T 1o54_A          230 PFIRIEVWE  238 (277)
T ss_dssp             SEEEEEEEC
T ss_pred             CCceeEEEE
Confidence            888776654

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.80  E-value=3.4e-09  Score=87.31  Aligned_cols=115  Identities=10%  Similarity=0.038  Sum_probs=81.4

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C-Ce--------------------EEEcc
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P-CM--------------------WILHD  240 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-gv--------------------~vLh~  240 (333)
                      ....+|||+|||+|-++..++...|+.+++++|+ +.+++.++++      . ++                    ++||.
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~~~~DvVLa~k~LHl  127 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLPV  127 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEEEETCHHH
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCCCCcChhhHhhHHHh
Confidence            4678999999999999999999999999999999 8899887753      1 11                    78888


Q ss_pred             CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEe
Q 035738          241 WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCE  320 (333)
Q Consensus       241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~  320 (333)
                      + ++. ...+.++.++|+|||.++-.+.-.-.++.                   ++-...-.+.|.+.. ...+.+++..
T Consensus       128 L-~~~-~~al~~v~~~L~pggvfISfptksl~Gr~-------------------~gm~~~Y~~~~~~~~-~~~~~~~~~~  185 (200)
T 3fzg_A          128 L-KQQ-DVNILDFLQLFHTQNFVISFPIKSLSGKE-------------------KGMEENYQLWFESFT-KGWIKILDSK  185 (200)
T ss_dssp             H-HHT-TCCHHHHHHTCEEEEEEEEEECCCCC--C-------------------TTCCCCHHHHHHHHT-TTTSCEEEEE
T ss_pred             h-hhh-HHHHHHHHHHhCCCCEEEEeChHHhcCCC-------------------cchhhhHHHHHHHhc-cCcceeeeee
Confidence            8 332 35666999999999999988842211111                   111222355667766 5555666666


Q ss_pred             ecCCc
Q 035738          321 RAIGN  325 (333)
Q Consensus       321 ~~~~~  325 (333)
                      ..++-
T Consensus       186 ~~~nE  190 (200)
T 3fzg_A          186 VIGNE  190 (200)
T ss_dssp             EETTE
T ss_pred             eeCce
Confidence            66543

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.80  E-value=7e-09  Score=89.56  Aligned_cols=80  Identities=18%  Similarity=0.246  Sum_probs=59.1

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC------------CCCCe--------------------
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP------------PHPCM--------------------  235 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~gv--------------------  235 (333)
                      ....+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+            ...++                    
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            4567899999999999999999999999999999 77776442            11222                    


Q ss_pred             -EEEccCChhHH-----------HHHHHHHHHhCCCCcEEEEEee
Q 035738          236 -WILHDWNDEHC-----------LKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 -~vLh~~~~~~~-----------~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                       .|..+++++..           ..+|++++++|+|||.|++...
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td  169 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD  169 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence             33333443321           3699999999999999988643

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.79  E-value=3.9e-09  Score=90.13  Aligned_cols=79  Identities=10%  Similarity=0.167  Sum_probs=59.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe---------------------EEEcc-
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM---------------------WILHD-  240 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv---------------------~vLh~-  240 (333)
                      ...+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++      .++                     .|..+ 
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            457899999999999999999999999999999 7887766432      122                     22222 


Q ss_pred             ---CChhHH-------HHHHHHHHHhCCCCcEEEEEee
Q 035738          241 ---WNDEHC-------LKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       241 ---~~~~~~-------~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                         |+....       ..++++++++|+|||++++...
T Consensus       114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td  151 (218)
T 3dxy_A          114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD  151 (218)
T ss_dssp             CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence               222111       1499999999999999888654

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.78  E-value=4.7e-09  Score=94.48  Aligned_cols=133  Identities=14%  Similarity=0.067  Sum_probs=82.7

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC--------------------------CC--------
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP--------------------------HP--------  233 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------------------~~--------  233 (333)
                      ....+|||||||+|..+..+++ .+..+++++|+ +.+++.+++                          .+        
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  111 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP  111 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred             CCCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence            3678999999999999999887 46779999999 777654321                          01        


Q ss_pred             --Ce------EEEccC--ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC------C-CCcc--------------cccc
Q 035738          234 --CM------WILHDW--NDEHCLKLLKNCYKSIPEDGKVIAVELMLPEV------P-NTSI--------------ESKS  282 (333)
Q Consensus       234 --gv------~vLh~~--~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~------~-~~~~--------------~~~~  282 (333)
                        ..      .++|+.  +.++...+|++++++|+|||.+++..+..+.-      . ....              ...+
T Consensus       112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  191 (313)
T 3bgv_A          112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLF  191 (313)
T ss_dssp             TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSS
T ss_pred             CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCc
Confidence              11      455655  33556799999999999999999987743110      0 0000              0000


Q ss_pred             ccchhhHH-HhhCCCCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738          283 NSDSDVLM-MIQSPGGKERTRHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       283 ~~~~d~~m-~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  322 (333)
                      .....+.+ ..........+.+++.++++++||+++.....
T Consensus       192 ~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f  232 (313)
T 3bgv_A          192 GCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTF  232 (313)
T ss_dssp             CCEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEEH
T ss_pred             cceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecCH
Confidence            00000000 00000012357899999999999999987654

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.78  E-value=1.3e-08  Score=90.13  Aligned_cols=81  Identities=12%  Similarity=0.118  Sum_probs=62.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe----------------EEEccCChh
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM----------------WILHDWNDE  244 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv----------------~vLh~~~~~  244 (333)
                      ..++.+|||||||+|.++..++.+.++.+++++|+ |.+++.|+++      .++                .|+-...-+
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~~~  199 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALAE  199 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTTCS
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCCcc
Confidence            77889999999999988877777788999999999 8999988753      122                222111123


Q ss_pred             HHHHHHHHHHHhCCCCcEEEEEee
Q 035738          245 HCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       245 ~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      +..++++++++.|+|||+|++.+.
T Consensus       200 d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          200 PKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CHHHHHHHHHHHcCCCcEEEEEcC
Confidence            335899999999999999999774

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.77  E-value=2.1e-08  Score=90.02  Aligned_cols=109  Identities=17%  Similarity=0.198  Sum_probs=78.2

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe--------------------EE
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM--------------------WI  237 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv--------------------~v  237 (333)
                      .++.+|||||||+|..+..+++..+..+++++|+ +.+++.++++          +++                    .|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            4568999999999999999998878889999999 7888766532          112                    23


Q ss_pred             EccCChhHH-------HHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHH
Q 035738          238 LHDWNDEHC-------LKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLAT  310 (333)
Q Consensus       238 Lh~~~~~~~-------~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~  310 (333)
                      +.+.++...       .+++++++++|+|||++++.....              +.+           .....++.+.++
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------------~~~-----------~~~~~~~~~~l~  228 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI--------------WLD-----------LELIEKMSRFIR  228 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT--------------TTC-----------HHHHHHHHHHHH
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc--------------ccc-----------hHHHHHHHHHHH
Confidence            333322211       478999999999999999874310              000           113668899999


Q ss_pred             hCCCCeeEEeec
Q 035738          311 GAGFSGISCERA  322 (333)
Q Consensus       311 ~aGf~~~~~~~~  322 (333)
                      ++||..+++...
T Consensus       229 ~~GF~~v~~~~~  240 (304)
T 3bwc_A          229 ETGFASVQYALM  240 (304)
T ss_dssp             HHTCSEEEEEEC
T ss_pred             hCCCCcEEEEEe
Confidence            999998887654

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.75  E-value=1.5e-08  Score=100.15  Aligned_cols=82  Identities=13%  Similarity=0.168  Sum_probs=67.1

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCC------------CCCe------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPP------------HPCM------------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~gv------------------  235 (333)
                      ..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.|++            .+++                  
T Consensus       719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFD  798 (950)
T 3htx_A          719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVD  798 (950)
T ss_dssp             HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCC
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCee
Confidence            3467899999999999999999998 5679999999 888887754            0111                  


Q ss_pred             -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                           .++|+++++....+++++++.|+|| .++|..+..
T Consensus       799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~  837 (950)
T 3htx_A          799 IGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY  837 (950)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred             EEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence                 6889999988888999999999999 777766543

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.75  E-value=3.6e-09  Score=90.65  Aligned_cols=99  Identities=11%  Similarity=0.196  Sum_probs=72.0

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CCe--------------------EEEccCChhHH
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PCM--------------------WILHDWNDEHC  246 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~gv--------------------~vLh~~~~~~~  246 (333)
                      .+..+|||||||+|.++..+++.  ..+++++|+ +.+++.++++ +++                    .|+.. .  +.
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-~--~~  121 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-R--GP  121 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-S--CC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-C--CH
Confidence            45689999999999999999988  568999999 8888776542 222                    12111 1  22


Q ss_pred             HHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738          247 LKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       247 ~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  322 (333)
                      ..+|+++++.|+|||+++  ..                           + ...+.+++.++++++||..+++...
T Consensus       122 ~~~l~~~~~~LkpgG~l~--~~---------------------------~-~~~~~~~~~~~l~~~Gf~~~~~~~~  167 (226)
T 3m33_A          122 TSVILRLPELAAPDAHFL--YV---------------------------G-PRLNVPEVPERLAAVGWDIVAEDHV  167 (226)
T ss_dssp             SGGGGGHHHHEEEEEEEE--EE---------------------------E-SSSCCTHHHHHHHHTTCEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCcEEE--Ee---------------------------C-CcCCHHHHHHHHHHCCCeEEEEEee
Confidence            478999999999999998  00                           0 1123557889999999988776543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.75  E-value=1.7e-08  Score=87.32  Aligned_cols=106  Identities=16%  Similarity=0.165  Sum_probs=77.1

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe---------------------EEE-
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM---------------------WIL-  238 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv---------------------~vL-  238 (333)
                      +....+|||||||+|..+..++...|+.+++++|+ +.+++.++++      +++                     .|+ 
T Consensus        68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~  147 (240)
T 1xdz_A           68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA  147 (240)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence            34678999999999999999999999999999999 7787766532      122                     111 


Q ss_pred             ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeE
Q 035738          239 HDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGIS  318 (333)
Q Consensus       239 h~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~  318 (333)
                      ..+.+  ...+++.+.+.|+|||++++.+.....                           ...+++.+.++++||+.++
T Consensus       148 ~~~~~--~~~~l~~~~~~LkpgG~l~~~~g~~~~---------------------------~~~~~~~~~l~~~g~~~~~  198 (240)
T 1xdz_A          148 RAVAR--LSVLSELCLPLVKKNGLFVALKAASAE---------------------------EELNAGKKAITTLGGELEN  198 (240)
T ss_dssp             ECCSC--HHHHHHHHGGGEEEEEEEEEEECC-CH---------------------------HHHHHHHHHHHHTTEEEEE
T ss_pred             eccCC--HHHHHHHHHHhcCCCCEEEEEeCCCch---------------------------HHHHHHHHHHHHcCCeEeE
Confidence            12332  358999999999999999886321000                           0135678889999999887


Q ss_pred             Eeec
Q 035738          319 CERA  322 (333)
Q Consensus       319 ~~~~  322 (333)
                      +...
T Consensus       199 ~~~~  202 (240)
T 1xdz_A          199 IHSF  202 (240)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7643

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.74  E-value=1.2e-08  Score=88.73  Aligned_cols=80  Identities=18%  Similarity=0.288  Sum_probs=61.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC--------------CCCe-----------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP--------------HPCM-----------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~gv-----------------  235 (333)
                      .....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++              ..++                 
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~  126 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK  126 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence            34667999999999999999999999999999998 777764421              1121                 


Q ss_pred             ----EEEccCChhHH-----------HHHHHHHHHhCCCCcEEEEEe
Q 035738          236 ----WILHDWNDEHC-----------LKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       236 ----~vLh~~~~~~~-----------~~lL~~~~~~L~pgG~l~i~e  267 (333)
                          .|+..++++..           ..+++++.++|+|||.|++..
T Consensus       127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence                44444554421           379999999999999999853

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.74  E-value=2.2e-08  Score=86.83  Aligned_cols=83  Identities=17%  Similarity=0.252  Sum_probs=65.1

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC-------CCe------------------------
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH-------PCM------------------------  235 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~gv------------------------  235 (333)
                      .++.+|||||||+|..+..+++..| +.+++++|+ +.+++.++++       ..+                        
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD  138 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD  138 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence            3567999999999999999999986 789999999 7887776542       112                        


Q ss_pred             EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738          236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLP  271 (333)
Q Consensus       236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~  271 (333)
                      .|+.+.+......+|+++.+.|+|||.|++-+....
T Consensus       139 ~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~  174 (242)
T 3r3h_A          139 FIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWD  174 (242)
T ss_dssp             EEEEESCGGGHHHHHHHHHHHEEEEEEEEEECSSSS
T ss_pred             EEEEcCChHHhHHHHHHHHHhcCCCeEEEEECCccC
Confidence            344444445566899999999999999998776654

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.73  E-value=1.3e-08  Score=88.61  Aligned_cols=106  Identities=11%  Similarity=0.016  Sum_probs=77.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe---------------------EEE-
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM---------------------WIL-  238 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv---------------------~vL-  238 (333)
                      .....+|||||||+|..+..++..+|+.+++++|+ +.+++.++++      .++                     .|+ 
T Consensus        78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s  157 (249)
T 3g89_A           78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA  157 (249)
T ss_dssp             CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence            34678999999999999999999999999999999 7888776642      122                     111 


Q ss_pred             ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeE
Q 035738          239 HDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGIS  318 (333)
Q Consensus       239 h~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~  318 (333)
                      +.+.+  ...+++.+.+.|+|||++++.......                           -..+++.+.++..||+..+
T Consensus       158 ~a~~~--~~~ll~~~~~~LkpgG~l~~~~g~~~~---------------------------~e~~~~~~~l~~~G~~~~~  208 (249)
T 3g89_A          158 RAVAP--LCVLSELLLPFLEVGGAAVAMKGPRVE---------------------------EELAPLPPALERLGGRLGE  208 (249)
T ss_dssp             ESSCC--HHHHHHHHGGGEEEEEEEEEEECSCCH---------------------------HHHTTHHHHHHHHTEEEEE
T ss_pred             CCcCC--HHHHHHHHHHHcCCCeEEEEEeCCCcH---------------------------HHHHHHHHHHHHcCCeEEE
Confidence            22232  247999999999999999986642110                           0033567778889999888


Q ss_pred             Eeec
Q 035738          319 CERA  322 (333)
Q Consensus       319 ~~~~  322 (333)
                      +.+.
T Consensus       209 ~~~~  212 (249)
T 3g89_A          209 VLAL  212 (249)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8765

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.71  E-value=5e-08  Score=83.19  Aligned_cols=114  Identities=10%  Similarity=0.042  Sum_probs=83.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC-e-----EEEccCC------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC-M-----WILHDWN------------  242 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g-v-----~vLh~~~------------  242 (333)
                      ..+..+|+|||||+|..+..+++..|..+++++|+ |.+++.|+++      .+ +     +.+..++            
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG   92 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG   92 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence            34567999999999999999999999999999999 8898888754      11 2     1222222            


Q ss_pred             --hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEe
Q 035738          243 --DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCE  320 (333)
Q Consensus       243 --~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~  320 (333)
                        .+-...+|..+.+.|+|+|++++ .+.  .                            ..+..+++|.+.||.+++-.
T Consensus        93 ~Gg~~i~~Il~~~~~~L~~~~~lVl-q~~--~----------------------------~~~~vr~~L~~~Gf~i~~e~  141 (225)
T 3kr9_A           93 MGGRLIARILEEGLGKLANVERLIL-QPN--N----------------------------REDDLRIWLQDHGFQIVAES  141 (225)
T ss_dssp             ECHHHHHHHHHHTGGGCTTCCEEEE-EES--S----------------------------CHHHHHHHHHHTTEEEEEEE
T ss_pred             CChHHHHHHHHHHHHHhCCCCEEEE-ECC--C----------------------------CHHHHHHHHHHCCCEEEEEE
Confidence              22346889999999999888766 331  0                            25678999999999988754


Q ss_pred             e---cCCceeEEEEe
Q 035738          321 R---AIGNLWVMEFY  332 (333)
Q Consensus       321 ~---~~~~~~vie~~  332 (333)
                      -   .+-+|.+|.+.
T Consensus       142 lv~e~~~~Yeii~~~  156 (225)
T 3kr9_A          142 ILEEAGKFYEILVVE  156 (225)
T ss_dssp             EEEETTEEEEEEEEE
T ss_pred             EEEECCEEEEEEEEE
Confidence            2   23456677664

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.70  E-value=1e-08  Score=85.66  Aligned_cols=82  Identities=13%  Similarity=0.182  Sum_probs=61.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC-------CCe-------------------EEEc
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH-------PCM-------------------WILH  239 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~gv-------------------~vLh  239 (333)
                      ..+..+|||+|||+|..+..+++++ |+.+++++|+ +.+++.++++       .++                   .|+.
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~   99 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF   99 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence            4567899999999999999999986 6789999999 7888776542       111                   2221


Q ss_pred             cC---C---------hhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          240 DW---N---------DEHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       240 ~~---~---------~~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                      +.   +         .+...++++++.+.|+|||++++....
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A          100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence            11   1         223457999999999999999998764

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.70  E-value=1.1e-08  Score=87.39  Aligned_cols=83  Identities=16%  Similarity=0.141  Sum_probs=65.1

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------C-Ce------------------------
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------P-CM------------------------  235 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~-gv------------------------  235 (333)
                      .+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.++++      . .+                        
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD  142 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence            3567999999999999999999988 789999999 7887766542      1 11                        


Q ss_pred             EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738          236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLP  271 (333)
Q Consensus       236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~  271 (333)
                      .|+.+.+......+++++.+.|+|||++++.+...+
T Consensus       143 ~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  178 (225)
T 3tr6_A          143 LIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRR  178 (225)
T ss_dssp             EEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred             EEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence            344344445567899999999999999998777654

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.70  E-value=8.4e-08  Score=78.61  Aligned_cols=105  Identities=14%  Similarity=0.118  Sum_probs=75.6

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------  235 (333)
                      .+++.+. ..+..+|||+|||+|.++..+++  +..+++++|+ +.+++.++++      +++                 
T Consensus        26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D  102 (183)
T 2yxd_A           26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN  102 (183)
T ss_dssp             HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred             HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence            3444444 56678999999999999999998  7889999999 7888776542      222                 


Q ss_pred             EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCC
Q 035738          236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFS  315 (333)
Q Consensus       236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~  315 (333)
                      .|+.... .....+++++++.  |||++++......                             +..++.+++++.||.
T Consensus       103 ~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~~~~~-----------------------------~~~~~~~~l~~~g~~  150 (183)
T 2yxd_A          103 KAFIGGT-KNIEKIIEILDKK--KINHIVANTIVLE-----------------------------NAAKIINEFESRGYN  150 (183)
T ss_dssp             EEEECSC-SCHHHHHHHHHHT--TCCEEEEEESCHH-----------------------------HHHHHHHHHHHTTCE
T ss_pred             EEEECCc-ccHHHHHHHHhhC--CCCEEEEEecccc-----------------------------cHHHHHHHHHHcCCe
Confidence            3333323 4456899999988  9999998875211                             145678899999986


Q ss_pred             eeEE
Q 035738          316 GISC  319 (333)
Q Consensus       316 ~~~~  319 (333)
                      +..+
T Consensus       151 ~~~~  154 (183)
T 2yxd_A          151 VDAV  154 (183)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.70  E-value=5.7e-08  Score=83.02  Aligned_cols=114  Identities=7%  Similarity=-0.024  Sum_probs=83.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC----e-------------------EEEcc
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC----M-------------------WILHD  240 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g----v-------------------~vLh~  240 (333)
                      .++..+|+|||||+|..+..+++..|..+++++|+ |.+++.|+++   .+    +                   -++..
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG   98 (230)
T 3lec_A           19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG   98 (230)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence            34668999999999999999999999889999999 8899888754   11    2                   11122


Q ss_pred             CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEe
Q 035738          241 WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCE  320 (333)
Q Consensus       241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~  320 (333)
                      ..-+-...+|....+.|+++|++++.-.                               ...+++++||.+.||.+++-.
T Consensus        99 mGg~lI~~IL~~~~~~l~~~~~lIlqp~-------------------------------~~~~~lr~~L~~~Gf~i~~E~  147 (230)
T 3lec_A           99 MGGRLIADILNNDIDKLQHVKTLVLQPN-------------------------------NREDDLRKWLAANDFEIVAED  147 (230)
T ss_dssp             ECHHHHHHHHHHTGGGGTTCCEEEEEES-------------------------------SCHHHHHHHHHHTTEEEEEEE
T ss_pred             CchHHHHHHHHHHHHHhCcCCEEEEECC-------------------------------CChHHHHHHHHHCCCEEEEEE
Confidence            2333456788888888888887665532                               026688999999999988765


Q ss_pred             ec---CCceeEEEEe
Q 035738          321 RA---IGNLWVMEFY  332 (333)
Q Consensus       321 ~~---~~~~~vie~~  332 (333)
                      -+   +-+|.+|.+.
T Consensus       148 lv~e~~~~Yeii~~~  162 (230)
T 3lec_A          148 ILTENDKRYEILVVK  162 (230)
T ss_dssp             EEEC--CEEEEEEEE
T ss_pred             EEEECCEEEEEEEEE
Confidence            32   3456777764

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.70  E-value=5e-08  Score=83.49  Aligned_cols=108  Identities=14%  Similarity=0.149  Sum_probs=77.1

Q ss_pred             CCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---C--Ce-------------------EEEccC
Q 035738          188 FDNIKQLVDVGGG-IGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---P--CM-------------------WILHDW  241 (333)
Q Consensus       188 ~~~~~~vlDVGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--gv-------------------~vLh~~  241 (333)
                      ..+..+|||+||| +|.++..+++.. ..+++++|+ +.+++.++++   .  ++                   .|+.+.
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np  131 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP  131 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence            4567899999999 999999999987 778999999 8888776532   0  11                   233221


Q ss_pred             C----------------------hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCc
Q 035738          242 N----------------------DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKE  299 (333)
Q Consensus       242 ~----------------------~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~  299 (333)
                      +                      .+...++++++.+.|+|||++++.-+..+                            
T Consensus       132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------------------  183 (230)
T 3evz_A          132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE----------------------------  183 (230)
T ss_dssp             CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH----------------------------
T ss_pred             CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH----------------------------
Confidence            1                      01125899999999999999998743100                            


Q ss_pred             CCHHHHHHHHHhCCCCeeEEeecCC
Q 035738          300 RTRHEFMTLATGAGFSGISCERAIG  324 (333)
Q Consensus       300 rt~~e~~~ll~~aGf~~~~~~~~~~  324 (333)
                      ...+++.++++++||.+..+....+
T Consensus       184 ~~~~~~~~~l~~~g~~~~~~~~~~g  208 (230)
T 3evz_A          184 KLLNVIKERGIKLGYSVKDIKFKVG  208 (230)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred             hHHHHHHHHHHHcCCceEEEEecCC
Confidence            1256888999999997666654433

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.70  E-value=2.7e-08  Score=88.07  Aligned_cols=105  Identities=13%  Similarity=0.109  Sum_probs=78.8

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC-e-----------------EEEccCCh
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC-M-----------------WILHDWND  243 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g-v-----------------~vLh~~~~  243 (333)
                      .+..+|||+|||+|.++..+++..+. +++++|+ |.+++.++++      .+ +                 .|+.+.+.
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~  202 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV  202 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence            45789999999999999999999877 8999999 8888876542      11 1                 34444442


Q ss_pred             hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeE
Q 035738          244 EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGIS  318 (333)
Q Consensus       244 ~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~  318 (333)
                       ...++++++.+.|+|||++++.+......                       ......+++.+.++++||+...
T Consensus       203 -~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------------------~~~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          203 -RTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             -SGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEEE
T ss_pred             -hHHHHHHHHHHHCCCCeEEEEEEeecccc-----------------------ccccHHHHHHHHHHHcCCeeEE
Confidence             23579999999999999999998853210                       0012367889999999998765

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.68  E-value=8.1e-08  Score=83.99  Aligned_cols=115  Identities=10%  Similarity=0.069  Sum_probs=81.5

Q ss_pred             CC-CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C-Ce--------------------EEE
Q 035738          188 FD-NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P-CM--------------------WIL  238 (333)
Q Consensus       188 ~~-~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-gv--------------------~vL  238 (333)
                      .. +..+|||+|||+|..+..++++.+. +++++|+ +.+++.++++      . .+                    .|+
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii  124 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT  124 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence            56 6789999999999999999998776 9999999 8888776542      1 11                    333


Q ss_pred             ccCC-----------------------hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCC
Q 035738          239 HDWN-----------------------DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSP  295 (333)
Q Consensus       239 h~~~-----------------------~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~  295 (333)
                      .+.+                       ......+++.+.+.|+|||+++++-.   .                       
T Consensus       125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~-----------------------  178 (259)
T 3lpm_A          125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---P-----------------------  178 (259)
T ss_dssp             ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---T-----------------------
T ss_pred             ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---H-----------------------
Confidence            3211                       02235799999999999999998521   1                       


Q ss_pred             CCCcCCHHHHHHHHHhCCCCeeEEeecC------CceeEEEEeC
Q 035738          296 GGKERTRHEFMTLATGAGFSGISCERAI------GNLWVMEFYK  333 (333)
Q Consensus       296 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~------~~~~vie~~~  333 (333)
                          ...+++.+++++.||...++.+..      ....+++++|
T Consensus       179 ----~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k  218 (259)
T 3lpm_A          179 ----ERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIK  218 (259)
T ss_dssp             ----TTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEE
T ss_pred             ----HHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEEe
Confidence                025577888899999888776542      2345666553

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.66  E-value=6.4e-09  Score=94.98  Aligned_cols=89  Identities=19%  Similarity=0.238  Sum_probs=67.3

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC-----------------e--
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC-----------------M--  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g-----------------v--  235 (333)
                      ..+++.++ .....+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++   .+                 .  
T Consensus       186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~  264 (343)
T 2pjd_A          186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM  264 (343)
T ss_dssp             HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred             HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence            34555554 33456999999999999999999999999999999 7777766542   00                 1  


Q ss_pred             ----EEEcc---CChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          236 ----WILHD---WNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 ----~vLh~---~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                          ..+|.   ++.+...++|++++++|+|||+++++..
T Consensus       265 Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  304 (343)
T 2pjd_A          265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (343)
T ss_dssp             EEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             EEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence                22332   1344567999999999999999999876

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.64  E-value=4e-08  Score=90.64  Aligned_cols=88  Identities=17%  Similarity=0.229  Sum_probs=66.5

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C---Ce--------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P---CM--------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~---gv--------------  235 (333)
                      .+++.++ .....+|||+|||+|.++..+++++|..+++++|+ +.+++.++++      .   .+              
T Consensus       213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~  291 (375)
T 4dcm_A          213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF  291 (375)
T ss_dssp             HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred             HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence            3555555 44558999999999999999999999999999999 7888776542      0   11              


Q ss_pred             ---EEEcc--------CChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          236 ---WILHD--------WNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 ---~vLh~--------~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                         .|+.+        .++....++++++.+.|+|||+++++..
T Consensus       292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n  335 (375)
T 4dcm_A          292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN  335 (375)
T ss_dssp             CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence               33322        2344455899999999999999999754

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.63  E-value=1.2e-08  Score=86.02  Aligned_cols=81  Identities=11%  Similarity=0.080  Sum_probs=61.1

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CCe------------------E-----EEcc
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PCM------------------W-----ILHD  240 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~gv------------------~-----vLh~  240 (333)
                      ....+|||||||+|.++..+++..+. +++++|+ +.+++.+++.    +++                  .     ++|.
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~  119 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA  119 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence            46789999999999999999998765 8999999 7777765431    111                  1     2222


Q ss_pred             CC-------------hhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          241 WN-------------DEHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       241 ~~-------------~~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                      +.             .+...++|+++.++|+|||++++.++..
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            22             2345689999999999999999998743

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.63  E-value=9.2e-08  Score=82.40  Aligned_cols=114  Identities=8%  Similarity=-0.022  Sum_probs=82.1

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC----e-----EEE--------------cc
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC----M-----WIL--------------HD  240 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g----v-----~vL--------------h~  240 (333)
                      .++..+|+|||||+|.++..+++..|..+++++|+ |.+++.|+++   .+    +     +.+              -.
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag   98 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG   98 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence            34668999999999999999999999889999999 8899888754   11    2     111              11


Q ss_pred             CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEe
Q 035738          241 WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCE  320 (333)
Q Consensus       241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~  320 (333)
                      ..-+-...+|....+.|++++++++.-..                               ..+.+++||.+.||.+++-.
T Consensus        99 mGg~lI~~IL~~~~~~L~~~~~lIlq~~~-------------------------------~~~~lr~~L~~~Gf~i~~E~  147 (244)
T 3gnl_A           99 MGGTLIRTILEEGAAKLAGVTKLILQPNI-------------------------------AAWQLREWSEQNNWLITSEA  147 (244)
T ss_dssp             ECHHHHHHHHHHTGGGGTTCCEEEEEESS-------------------------------CHHHHHHHHHHHTEEEEEEE
T ss_pred             CchHHHHHHHHHHHHHhCCCCEEEEEcCC-------------------------------ChHHHHHHHHHCCCEEEEEE
Confidence            22233567888888888888777665320                               26688999999999986543


Q ss_pred             ---ecCCceeEEEEe
Q 035738          321 ---RAIGNLWVMEFY  332 (333)
Q Consensus       321 ---~~~~~~~vie~~  332 (333)
                         ..+-+|.+|.+.
T Consensus       148 lv~e~~k~Yeii~~~  162 (244)
T 3gnl_A          148 ILREDNKVYEIMVLA  162 (244)
T ss_dssp             EEEETTEEEEEEEEE
T ss_pred             EEEECCEEEEEEEEE
Confidence               233456677664

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.62  E-value=1.2e-08  Score=92.84  Aligned_cols=89  Identities=13%  Similarity=0.152  Sum_probs=66.0

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC-----------------CCe----
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH-----------------PCM----  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-----------------~gv----  235 (333)
                      ..++..++ ..+..+|||||||+|.++..+++. .|+.+++++|+ +.+++.|+++                 .++    
T Consensus        95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~  173 (336)
T 2b25_A           95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  173 (336)
T ss_dssp             HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence            34555555 667889999999999999999998 58899999999 7777655321                 111    


Q ss_pred             ----------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          236 ----------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       236 ----------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                                      .|+.+.+++.  .+++++.+.|+|||++++.....
T Consensus       174 ~d~~~~~~~~~~~~fD~V~~~~~~~~--~~l~~~~~~LkpgG~lv~~~~~~  222 (336)
T 2b25_A          174 KDISGATEDIKSLTFDAVALDMLNPH--VTLPVFYPHLKHGGVCAVYVVNI  222 (336)
T ss_dssp             SCTTCCC-------EEEEEECSSSTT--TTHHHHGGGEEEEEEEEEEESSH
T ss_pred             CChHHcccccCCCCeeEEEECCCCHH--HHHHHHHHhcCCCcEEEEEeCCH
Confidence                            3333444333  48999999999999999887643

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.62  E-value=8.7e-08  Score=89.52  Aligned_cols=94  Identities=13%  Similarity=0.172  Sum_probs=68.8

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhC-------CCC--------CCeE------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHV-------PPH--------PCMW------  236 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~~--------~gv~------  236 (333)
                      ..++..+. .....+|||||||+|.++..+++.++..+++++|+ +.+++.|       +++        .++.      
T Consensus       232 ~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~  310 (433)
T 1u2z_A          232 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS  310 (433)
T ss_dssp             HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence            34555555 66788999999999999999999988889999999 7766655       221        1221      


Q ss_pred             ----------------EEc--cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 035738          237 ----------------ILH--DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEV  273 (333)
Q Consensus       237 ----------------vLh--~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~  273 (333)
                                      |+.  ..-.++..+.|+++.+.|+|||++++.+.+.+..
T Consensus       311 ~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~f~p~~  365 (433)
T 1u2z_A          311 FVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSLT  365 (433)
T ss_dssp             STTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             cccccccccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence                            111  1112445578899999999999999999877654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.62  E-value=1.7e-08  Score=86.86  Aligned_cols=83  Identities=16%  Similarity=0.253  Sum_probs=64.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe--------------------EEEc
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM--------------------WILH  239 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv--------------------~vLh  239 (333)
                      ..+..+|||||||+|..+..+++.+|..+++++|+ +.+++.++++       .++                    .|+.
T Consensus        69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  148 (232)
T 3ntv_A           69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI  148 (232)
T ss_dssp             HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred             hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence            34678999999999999999999889999999999 8888776542       122                    3333


Q ss_pred             cCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          240 DWNDEHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       240 ~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                      +.+......+++++.+.|+|||+|++-+...
T Consensus       149 ~~~~~~~~~~l~~~~~~LkpgG~lv~d~~~~  179 (232)
T 3ntv_A          149 DAAKAQSKKFFEIYTPLLKHQGLVITDNVLY  179 (232)
T ss_dssp             ETTSSSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred             cCcHHHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence            3444455689999999999999997755543

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.59  E-value=8.9e-08  Score=82.62  Aligned_cols=79  Identities=14%  Similarity=0.095  Sum_probs=59.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHH----CCCCeEEEeec-hhHhhhCCCC-CCe----------------------EEEccC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTK----YPYIKGINFDL-PHVIEHVPPH-PCM----------------------WILHDW  241 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~-~gv----------------------~vLh~~  241 (333)
                      +..+|||||||+|..+..+++.    +|+.+++++|+ +.+++.++.. .++                      .|+-+.
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~  160 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN  160 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence            3579999999999999999987    78899999999 8887766431 111                      122111


Q ss_pred             ChhHHHHHHHHHHH-hCCCCcEEEEEee
Q 035738          242 NDEHCLKLLKNCYK-SIPEDGKVIAVEL  268 (333)
Q Consensus       242 ~~~~~~~lL~~~~~-~L~pgG~l~i~e~  268 (333)
                      ......++|+++.+ .|+|||++++.+.
T Consensus       161 ~~~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          161 AHANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             SCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             chHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            12234679999997 9999999999876

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.57  E-value=7.3e-08  Score=82.32  Aligned_cols=80  Identities=8%  Similarity=0.073  Sum_probs=62.5

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------C--Ce--------------------EEEcc
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------P--CM--------------------WILHD  240 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~--gv--------------------~vLh~  240 (333)
                      ..+|||||||+|..+..++++.| +.+++++|+ +.+++.++++      .  .+                    .|+.+
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d  136 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ  136 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence            34999999999999999999875 789999999 8888776542      1  12                    44445


Q ss_pred             CChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          241 WNDEHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                      ........+++++.+.|+|||.+++.+...
T Consensus       137 ~~~~~~~~~l~~~~~~LkpGG~lv~dn~~~  166 (221)
T 3dr5_A          137 VSPMDLKALVDAAWPLLRRGGALVLADALL  166 (221)
T ss_dssp             CCTTTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred             CcHHHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            444555689999999999999988865543

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.57  E-value=3.2e-08  Score=83.27  Aligned_cols=76  Identities=14%  Similarity=0.212  Sum_probs=59.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------EEEc-cCChh
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------WILH-DWNDE  244 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------~vLh-~~~~~  244 (333)
                      +..+|||||||+|..+..++..+|..+++++|+ +.+++.++++      .++                 .|+. .+.  
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~~--  142 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA--  142 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS--
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEeccC--
Confidence            367999999999999999999999999999999 7887766532      112                 2222 222  


Q ss_pred             HHHHHHHHHHHhCCCCcEEEEEe
Q 035738          245 HCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       245 ~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      ....+++++.+.|+|||++++..
T Consensus       143 ~~~~~l~~~~~~L~~gG~l~~~~  165 (207)
T 1jsx_A          143 SLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHhcCCCcEEEEEe
Confidence            23589999999999999999873

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.56  E-value=1.2e-07  Score=83.68  Aligned_cols=87  Identities=13%  Similarity=0.148  Sum_probs=66.7

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC---------CCe------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH---------PCM------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~---------~gv------------  235 (333)
                      ..++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.++++         .++            
T Consensus        89 ~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~  167 (280)
T 1i9g_A           89 AQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL  167 (280)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred             HHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence            34555555 677889999999999999999986 57889999999 7776655321         111            


Q ss_pred             ------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          236 ------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 ------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                            .|+.+.++..  ++|+++.++|+|||++++..+
T Consensus       168 ~~~~~D~v~~~~~~~~--~~l~~~~~~L~pgG~l~~~~~  204 (280)
T 1i9g_A          168 PDGSVDRAVLDMLAPW--EVLDAVSRLLVAGGVLMVYVA  204 (280)
T ss_dssp             CTTCEEEEEEESSCGG--GGHHHHHHHEEEEEEEEEEES
T ss_pred             CCCceeEEEECCcCHH--HHHHHHHHhCCCCCEEEEEeC
Confidence                  4444555554  799999999999999999876

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.55  E-value=2.2e-08  Score=88.23  Aligned_cols=76  Identities=12%  Similarity=0.134  Sum_probs=60.6

Q ss_pred             CCCeEEEEcCCccH----HHHHHHHHCC----CCeEEEeec-hhHhhhCCCC----------------------------
Q 035738          190 NIKQLVDVGGGIGV----TLQAITTKYP----YIKGINFDL-PHVIEHVPPH----------------------------  232 (333)
Q Consensus       190 ~~~~vlDVGgG~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~----------------------------  232 (333)
                      +..+|+|+|||||.    .++.+++..|    +.++++.|+ +.+++.|++.                            
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35799999999998    5666777655    468999999 8888765421                            


Q ss_pred             ------------------------C--C-e------EEEccCChhHHHHHHHHHHHhCCCCcEEEE
Q 035738          233 ------------------------P--C-M------WILHDWNDEHCLKLLKNCYKSIPEDGKVIA  265 (333)
Q Consensus       233 ------------------------~--g-v------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i  265 (333)
                                              +  + .      ++|++++++...+++++++++|+|||.+++
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l  250 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA  250 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence                                    1  0 0      788889888778999999999999999987

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.54  E-value=4.8e-08  Score=87.48  Aligned_cols=78  Identities=15%  Similarity=0.287  Sum_probs=61.5

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe--------------------EEEccCCh
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM--------------------WILHDWND  243 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv--------------------~vLh~~~~  243 (333)
                      ..+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++      +++                    .|+.+..+
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~  169 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA  169 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence            45999999999999999999999999999999 8899887653      122                    34443321


Q ss_pred             h-----H--HHHHHHHHHHhCCCCcEEEEEee
Q 035738          244 E-----H--CLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       244 ~-----~--~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      .     .  ..+++++++++|+|||.+++.-.
T Consensus       170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            1     1  14799999999999999988765

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.54  E-value=2e-07  Score=77.29  Aligned_cols=82  Identities=9%  Similarity=-0.030  Sum_probs=61.2

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe--------------------EEEcc-
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM--------------------WILHD-  240 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv--------------------~vLh~-  240 (333)
                      ....+|||+|||+|.++..++.. +..+++++|+ +.+++.++++      .++                    .|+.+ 
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~  121 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP  121 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence            35679999999999999987774 5568999999 8888877642      111                    23322 


Q ss_pred             ---CChhHHHHHHHHHHH--hCCCCcEEEEEeeecC
Q 035738          241 ---WNDEHCLKLLKNCYK--SIPEDGKVIAVELMLP  271 (333)
Q Consensus       241 ---~~~~~~~~lL~~~~~--~L~pgG~l~i~e~~~~  271 (333)
                         +..+...++++++.+  .|+|||++++......
T Consensus       122 p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          122 PYNVDSADVDAILAALGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             CTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred             CCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence               223556789999999  9999999999776443

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.53  E-value=1.8e-07  Score=76.64  Aligned_cols=82  Identities=10%  Similarity=0.050  Sum_probs=59.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe-------------------EEEcc
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM-------------------WILHD  240 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv-------------------~vLh~  240 (333)
                      .....+|||+|||+|.++..+++. +..+++++|+ +.+++.++++       .++                   .|+.+
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~  107 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD  107 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEEC
Confidence            346679999999999999999887 6679999999 8888776542       011                   33333


Q ss_pred             CC--hhHHHHHHHHHH--HhCCCCcEEEEEeeec
Q 035738          241 WN--DEHCLKLLKNCY--KSIPEDGKVIAVELML  270 (333)
Q Consensus       241 ~~--~~~~~~lL~~~~--~~L~pgG~l~i~e~~~  270 (333)
                      .+  .....++++.+.  +.|+|||.+++.....
T Consensus       108 ~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A          108 PPYAKETIVATIEALAAKNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             CSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             CCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence            22  233456777777  8999999999877644

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.52  E-value=5.2e-08  Score=83.71  Aligned_cols=81  Identities=10%  Similarity=0.214  Sum_probs=62.7

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe---------------------EEEc
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM---------------------WILH  239 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv---------------------~vLh  239 (333)
                      .+..+|||||||+|..+..+++.+|..+++++|+ +.+++.++++       ..+                     .|+.
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  132 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI  132 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence            3567999999999999999999999999999999 7887766532       112                     2333


Q ss_pred             cCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          240 DWNDEHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       240 ~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                      +.+.+....+|+++.+.|+|||++++.+..
T Consensus       133 ~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  162 (233)
T 2gpy_A          133 DAAKGQYRRFFDMYSPMVRPGGLILSDNVL  162 (233)
T ss_dssp             EGGGSCHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred             CCCHHHHHHHHHHHHHHcCCCeEEEEEcCC
Confidence            333334468999999999999999887543

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.52  E-value=1.2e-07  Score=82.40  Aligned_cols=82  Identities=20%  Similarity=0.184  Sum_probs=62.8

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC---C----Ce------------------------
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH---P----CM------------------------  235 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---~----gv------------------------  235 (333)
                      .+..+|||||||+|..+..+++..| +.+++++|+ +.+++.++++   .    .+                        
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  157 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  157 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence            3567999999999999999999988 789999999 7888776542   1    11                        


Q ss_pred             -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                       .|+.+.+......+++++.+.|+|||.+++.+...
T Consensus       158 D~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~  193 (247)
T 1sui_A          158 DFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLW  193 (247)
T ss_dssp             SEEEECSCSTTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred             EEEEEcCchHHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence             23333333445689999999999999988766543

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.51  E-value=4.2e-08  Score=82.91  Aligned_cols=81  Identities=15%  Similarity=0.185  Sum_probs=62.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC-------CC-----------------e-EEEccCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH-------PC-----------------M-WILHDWN  242 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~g-----------------v-~vLh~~~  242 (333)
                      +..+|||||||+|..+..+++..| +.+++++|+ +.+++.++++       ..                 . .|+.+.+
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~  135 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCD  135 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEETT
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcCC
Confidence            467999999999999999999988 789999999 8888776542       01                 1 3333333


Q ss_pred             hhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          243 DEHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       243 ~~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                      ......+++++.+.|+|||.+++.+...
T Consensus       136 ~~~~~~~l~~~~~~LkpgG~lv~~~~~~  163 (210)
T 3c3p_A          136 VFNGADVLERMNRCLAKNALLIAVNALR  163 (210)
T ss_dssp             TSCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred             hhhhHHHHHHHHHhcCCCeEEEEECccc
Confidence            4455689999999999999988866543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.50  E-value=8.4e-08  Score=82.02  Aligned_cols=83  Identities=16%  Similarity=0.256  Sum_probs=63.4

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC-------CCe-----------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH-------PCM-----------------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~gv-----------------------  235 (333)
                      ..+..+|||||||+|..+..+++..| ..+++++|+ +.+++.++++       ..+                       
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~  146 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  146 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            34567999999999999999999887 789999999 8887766532       111                       


Q ss_pred             -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                       .|+.+.+......+++++.+.|+|||.+++.+...
T Consensus       147 D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~  182 (229)
T 2avd_A          147 DVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLW  182 (229)
T ss_dssp             EEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred             cEEEECCCHHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence             22333334445689999999999999999877644

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.48  E-value=4.2e-08  Score=85.79  Aligned_cols=77  Identities=18%  Similarity=0.211  Sum_probs=58.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------------C---C----e---EEEccC-Chh
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------------P---C----M---WILHDW-NDE  244 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~---g----v---~vLh~~-~~~  244 (333)
                      +..+|||||||+|.++..+++.  ..+++++|+ +.+++.+++.             +   +    |   .+++++ ++ 
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~-  130 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN-  130 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence            6679999999999999999887  468999999 7787765421             0   1    1   222333 44 


Q ss_pred             HHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          245 HCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       245 ~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                       ..++|++++++|+|||++++..+..
T Consensus       131 -~~~~l~~~~~~LkpgG~l~~~~~~~  155 (260)
T 2avn_A          131 -KDKAFSEIRRVLVPDGLLIATVDNF  155 (260)
T ss_dssp             -HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             -HHHHHHHHHHHcCCCeEEEEEeCCh
Confidence             4689999999999999999987643

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.47  E-value=6.7e-09  Score=90.56  Aligned_cols=125  Identities=7%  Similarity=0.038  Sum_probs=74.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC-eEEE-----------------------
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC-MWIL-----------------------  238 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g-v~vL-----------------------  238 (333)
                      ...+|||+|||+|.++..++.++|+.+++++|+ +.+++.|+++      .+ +.+.                       
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            567999999999999999999988899999999 8887766532      11 2111                       


Q ss_pred             -cc---CC-h--------------hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCc
Q 035738          239 -HD---WN-D--------------EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKE  299 (333)
Q Consensus       239 -h~---~~-~--------------~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~  299 (333)
                       .+   +. .              +....++.+++++|+|||.+.+++.+.....      .......+  ... ..+..
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~------~~l~~~g~--~~~-~~~~~  215 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSL------QLKKRLRW--YSC-MLGKK  215 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHH------HHGGGBSC--EEE-EESST
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHH------hcccceEE--EEE-CCCCh
Confidence             11   00 0              0112456677777778777776665332100      00000000  000 12334


Q ss_pred             CCHHHHHHHHHhCCCCeeEEeecC
Q 035738          300 RTRHEFMTLATGAGFSGISCERAI  323 (333)
Q Consensus       300 rt~~e~~~ll~~aGf~~~~~~~~~  323 (333)
                      .+.+++.++++++||+.+++....
T Consensus       216 ~~~~~~~~~l~~~Gf~~v~~~~~~  239 (254)
T 2h00_A          216 CSLAPLKEELRIQGVPKVTYTEFC  239 (254)
T ss_dssp             TSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred             hHHHHHHHHHHHcCCCceEEEEEe
Confidence            456899999999999999887664

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.45  E-value=3.7e-07  Score=78.71  Aligned_cols=83  Identities=14%  Similarity=0.167  Sum_probs=63.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC---C---C-e-----------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH---P---C-M-----------------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---~---g-v-----------------------  235 (333)
                      ..+..+|||||||+|..+..+++..| ..+++++|+ +.+++.++++   .   + +                       
T Consensus        58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~  137 (239)
T 2hnk_A           58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW  137 (239)
T ss_dssp             HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred             hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence            34567999999999999999999988 689999999 7777666532   0   1 1                       


Q ss_pred             ------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          236 ------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       236 ------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                                  .|+.+...+....+|+++.+.|+|||++++.+...
T Consensus       138 ~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~  184 (239)
T 2hnk_A          138 ASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLW  184 (239)
T ss_dssp             GTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred             cccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence                        22333344556689999999999999999876544

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.44  E-value=2.3e-07  Score=80.03  Aligned_cols=81  Identities=20%  Similarity=0.160  Sum_probs=62.7

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC---CC----e------------------------
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH---PC----M------------------------  235 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---~g----v------------------------  235 (333)
                      .+..+|||||||+|..+..+++..| +.+++++|+ +.+++.++++   .+    +                        
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            3567999999999999999999987 789999999 7887766542   11    1                        


Q ss_pred             -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                       .|+.+.+......+++++.+.|+|||.+++.+..
T Consensus       149 D~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~~~  183 (237)
T 3c3y_A          149 DFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTL  183 (237)
T ss_dssp             EEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred             CEEEECCchHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence             3333444455678999999999999998775543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.43  E-value=3.7e-08  Score=84.94  Aligned_cols=113  Identities=10%  Similarity=-0.030  Sum_probs=81.7

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC--------------------e----EEEcc
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC--------------------M----WILHD  240 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g--------------------v----~vLh~  240 (333)
                      ..+.+|||||||+|-++..+...+|..+++++|+ +.+++.++++   .|                    +    .++|+
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~  210 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC  210 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence            4588999999999999999999999999999999 8888877653   11                    1    55567


Q ss_pred             CChhHHHHHHHHHHHhCCCCcEEEEEee--ecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeE
Q 035738          241 WNDEHCLKLLKNCYKSIPEDGKVIAVEL--MLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGIS  318 (333)
Q Consensus       241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~--~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~  318 (333)
                      +.++.....+ ++.++|+|+|.++-.+.  +....+          .++           ..-.+.|.+.+.+.|+. ++
T Consensus       211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~----------gm~-----------~~Y~~~~e~~~~~~g~~-~~  267 (281)
T 3lcv_B          211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSK----------GMF-----------QNYSQSFESQARERSCR-IQ  267 (281)
T ss_dssp             HHHHSTTHHH-HHHHHSSCSEEEEEEECC-----------------CHH-----------HHHHHHHHHHHHHHTCC-EE
T ss_pred             hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCc----------chh-----------hHHHHHHHHHHHhcCCc-ee
Confidence            7766655677 99999999999988887  322211          111           11266889999999984 44


Q ss_pred             EeecCC
Q 035738          319 CERAIG  324 (333)
Q Consensus       319 ~~~~~~  324 (333)
                      ....++
T Consensus       268 ~~~~~n  273 (281)
T 3lcv_B          268 RLEIGN  273 (281)
T ss_dssp             EEEETT
T ss_pred             eeeecC
Confidence            444433

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.42  E-value=9.1e-08  Score=83.94  Aligned_cols=78  Identities=19%  Similarity=0.254  Sum_probs=60.7

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CCe------------------EEEccCChhHHHH
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PCM------------------WILHDWNDEHCLK  248 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~gv------------------~vLh~~~~~~~~~  248 (333)
                      ....+|||||||+|.++..+++..|..+++++|+ +.+++.+++. +++                  .|+....    ..
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~----~~  159 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA----PC  159 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC----CC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC----hh
Confidence            4567999999999999999999988889999999 7887766532 111                  2332222    24


Q ss_pred             HHHHHHHhCCCCcEEEEEeeec
Q 035738          249 LLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       249 lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                      .++++.++|+|||++++..+..
T Consensus       160 ~l~~~~~~L~pgG~l~~~~~~~  181 (269)
T 1p91_A          160 KAEELARVVKPGGWVITATPGP  181 (269)
T ss_dssp             CHHHHHHHEEEEEEEEEEEECT
T ss_pred             hHHHHHHhcCCCcEEEEEEcCH
Confidence            6899999999999999998754

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.40  E-value=7.4e-07  Score=72.27  Aligned_cols=90  Identities=19%  Similarity=0.096  Sum_probs=60.5

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechhHhhhCCC---------CC-----------C-e-E
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDLPHVIEHVPP---------HP-----------C-M-W  236 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~---------~~-----------g-v-~  236 (333)
                      .++..+....+..+|||+|||+|.++..+++.+ |+.+++++|+..+++..+-         .+           + . .
T Consensus        12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~   91 (180)
T 1ej0_A           12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQV   91 (180)
T ss_dssp             HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccccCcEEEEEcccccchhhhhhhccCCCCceeE
Confidence            444444435567899999999999999999985 7789999998334332110         00           0 1 1


Q ss_pred             E-----EccCChh---H------HHHHHHHHHHhCCCCcEEEEEeee
Q 035738          237 I-----LHDWNDE---H------CLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       237 v-----Lh~~~~~---~------~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                      |     +|.....   .      ..++++++.+.|+|||.+++.+..
T Consensus        92 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  138 (180)
T 1ej0_A           92 VMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ  138 (180)
T ss_dssp             EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             EEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            2     2222222   1      158999999999999999987763

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.40  E-value=7.3e-07  Score=74.05  Aligned_cols=88  Identities=24%  Similarity=0.271  Sum_probs=58.9

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCC---------CeEEEeechhHh--hhC----CCC-------------
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPY---------IKGINFDLPHVI--EHV----PPH-------------  232 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~---------~~~~~~D~~~~~--~~a----~~~-------------  232 (333)
                      +...+..+.+..+|||||||+|.++..++++++.         .+++++|+..+.  +.+    ...             
T Consensus        13 l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (196)
T 2nyu_A           13 VNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEV   92 (196)
T ss_dssp             HHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCTTSHHHHHHHHHH
T ss_pred             HHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccCCCHHHHHHHHHh
Confidence            3344443556789999999999999999999875         799999984322  111    110             


Q ss_pred             -C--Ce-EEEccC---------ChhH-----HHHHHHHHHHhCCCCcEEEEEee
Q 035738          233 -P--CM-WILHDW---------NDEH-----CLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       233 -~--gv-~vLh~~---------~~~~-----~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                       +  .+ .|+.+.         .+..     ...+++++.++|+|||++++...
T Consensus        93 ~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           93 LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence             0  11 333211         1111     14789999999999999998765

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.40  E-value=2.5e-07  Score=77.96  Aligned_cols=79  Identities=8%  Similarity=0.047  Sum_probs=58.9

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------  235 (333)
                      .++..+. ..+..+|||||||+|.++..+++.  ..+++++|+ +.+++.++++      +++                 
T Consensus        68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  144 (210)
T 3lbf_A           68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF  144 (210)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred             HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence            3444454 667889999999999999999998  578999999 8888776542      122                 


Q ss_pred             ------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          236 ------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       236 ------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                            ..+|+++        .++.+.|+|||++++.-..
T Consensus       145 D~i~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          145 DAIIVTAAPPEIP--------TALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             EEEEESSBCSSCC--------THHHHTEEEEEEEEEEECS
T ss_pred             cEEEEccchhhhh--------HHHHHhcccCcEEEEEEcC
Confidence                  2334444        3578999999999997764

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.39  E-value=3.2e-07  Score=78.07  Aligned_cols=80  Identities=10%  Similarity=0.177  Sum_probs=58.0

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------C-Ce------------------------
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------P-CM------------------------  235 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~-gv------------------------  235 (333)
                      .+..+|||||||+|..+..+++..+ +.+++++|+ +.+++.++++      . .+                        
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD  136 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  136 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence            3568999999999999999999875 789999999 8888776642      0 11                        


Q ss_pred             EEEccCChhH---HHHHHHHHHHhCCCCcEEEEEeee
Q 035738          236 WILHDWNDEH---CLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       236 ~vLh~~~~~~---~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                      .|+.+.....   ..++++.+ +.|+|||++++.+..
T Consensus       137 ~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~  172 (221)
T 3u81_A          137 MVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVI  172 (221)
T ss_dssp             EEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred             EEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence            3333332222   22567777 999999998876654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.39  E-value=7.3e-07  Score=76.97  Aligned_cols=85  Identities=15%  Similarity=0.156  Sum_probs=64.2

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe----------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM----------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv----------------  235 (333)
                      .++..++ .....+|||+|||+|.++..+++.  ..+++++|+ +.+++.++++       +++                
T Consensus        82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  158 (248)
T 2yvl_A           82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI  158 (248)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred             HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence            4445454 667789999999999999999998  678999998 7777665431       111                


Q ss_pred             --EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          236 --WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       236 --~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                        .++.+.++..  .+++++.+.|+|||++++..+.
T Consensus       159 ~D~v~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          159 FHAAFVDVREPW--HYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             BSEEEECSSCGG--GGHHHHHHHBCTTCEEEEEESS
T ss_pred             ccEEEECCcCHH--HHHHHHHHHcCCCCEEEEEeCC
Confidence              3444444443  7899999999999999998863

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.39  E-value=7.3e-07  Score=74.24  Aligned_cols=89  Identities=17%  Similarity=0.234  Sum_probs=59.1

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhh--C-------CCCC---------------
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEH--V-------PPHP---------------  233 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~--a-------~~~~---------------  233 (333)
                      ..++.+.+..+.+..+|||+|||+|.++..++++  ..+++++|+..+...  .       ...+               
T Consensus        13 L~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (191)
T 3dou_A           13 LEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIE   90 (191)
T ss_dssp             HHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence            3455666654567889999999999999999887  678999998332110  0       0000               


Q ss_pred             Ce-EEEccCC---------h-----hHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          234 CM-WILHDWN---------D-----EHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       234 gv-~vLh~~~---------~-----~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      .+ .|+.+.+         +     +.+..+|+.+.+.|+|||++++...
T Consensus        91 ~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~  140 (191)
T 3dou_A           91 KVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF  140 (191)
T ss_dssp             SEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence            12 3333321         0     1135788999999999999987665

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.39  E-value=2.1e-07  Score=79.97  Aligned_cols=82  Identities=15%  Similarity=0.163  Sum_probs=63.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC-------C----------------------C-e-E
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH-------P----------------------C-M-W  236 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~----------------------g-v-~  236 (333)
                      +..+|||||||+|..+..+++..| +.+++++|+ +.+++.++++       .                      + . .
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~  151 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL  151 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence            467999999999999999999987 789999999 7777766532       0                      1 1 3


Q ss_pred             EEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738          237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLP  271 (333)
Q Consensus       237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~  271 (333)
                      |+.+.+......+++++.+.|+|||.+++.+....
T Consensus       152 V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  186 (232)
T 3cbg_A          152 IFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWH  186 (232)
T ss_dssp             EEECSCGGGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred             EEECCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence            33344445567899999999999999988776543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.39  E-value=9.1e-07  Score=73.84  Aligned_cols=45  Identities=22%  Similarity=0.140  Sum_probs=36.6

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCC--CCeEEEeechh
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYP--YIKGINFDLPH  224 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p--~~~~~~~D~~~  224 (333)
                      .+.+.+..+.+..+|||||||+|.++..+++++|  ..+++++|+..
T Consensus        12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~   58 (201)
T 2plw_A           12 ELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI   58 (201)
T ss_dssp             HHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred             HHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence            3444554346678999999999999999999998  68999999943

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.38  E-value=2.6e-07  Score=78.12  Aligned_cols=80  Identities=10%  Similarity=0.092  Sum_probs=59.7

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC------CCe----------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH------PCM----------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~gv----------------  235 (333)
                      .++..+. ..+..+|||||||+|.++..+++.. |+.+++++|+ +.+++.+++.      .++                
T Consensus        68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  146 (215)
T 2yxe_A           68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP  146 (215)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred             HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence            3444444 6677899999999999999999987 6689999999 7787766532      111                


Q ss_pred             -------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          236 -------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 -------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                             .++|+++        +++.+.|+|||++++...
T Consensus       147 fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~  178 (215)
T 2yxe_A          147 YDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVG  178 (215)
T ss_dssp             EEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred             eeEEEECCchHHHH--------HHHHHHcCCCcEEEEEEC
Confidence                   2333333        578899999999999865

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.37  E-value=1.7e-07  Score=83.60  Aligned_cols=77  Identities=30%  Similarity=0.403  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EEEc
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WILH  239 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~vLh  239 (333)
                      .+.+|||||||+|..+..+++..|..+++++|+ +.+++.++++          +++                   .|+.
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            457999999999999999999888889999999 7887765432          122                   4444


Q ss_pred             cCChh--------HHHHHHHHHHHhCCCCcEEEEE
Q 035738          240 DWNDE--------HCLKLLKNCYKSIPEDGKVIAV  266 (333)
Q Consensus       240 ~~~~~--------~~~~lL~~~~~~L~pgG~l~i~  266 (333)
                      +.+++        ...++++++++.|+|||.+++.
T Consensus       170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  204 (296)
T 1inl_A          170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  204 (296)
T ss_dssp             EC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            44433        1258999999999999999886

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.35  E-value=2.7e-06  Score=69.47  Aligned_cols=105  Identities=9%  Similarity=0.000  Sum_probs=68.7

Q ss_pred             CCCCCeEEEEcCCccH------HHHHHHHHCC-CCeEEEeechhHhhh--CCCCCCe----EEEccC-ChhHHHHHHHHH
Q 035738          188 FDNIKQLVDVGGGIGV------TLQAITTKYP-YIKGINFDLPHVIEH--VPPHPCM----WILHDW-NDEHCLKLLKNC  253 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~------~~~~l~~~~p-~~~~~~~D~~~~~~~--a~~~~gv----~vLh~~-~~~~~~~lL~~~  253 (333)
                      ...+.+|||||||...      +.....++.+ ++++...|....-..  ....-++    .+||++ ++.  .++|+++
T Consensus        10 ~~~g~~vL~~~~g~v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~--~~~l~~~   87 (176)
T 2ld4_A           10 ISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHS--AEILAEI   87 (176)
T ss_dssp             CCTTSEEEEEECTTSCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCC--HHHHHHH
T ss_pred             CCCCCEEEEecCCceeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhcccCH--HHHHHHH
Confidence            5678999999999753      1122233343 477777777433221  1111122    677887 555  4899999


Q ss_pred             HHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCC
Q 035738          254 YKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGF  314 (333)
Q Consensus       254 ~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf  314 (333)
                      +++|||||++++.++......                    .....++.++|.++|+++||
T Consensus        88 ~r~LkpgG~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           88 ARILRPGGCLFLKEPVETAVD--------------------NNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             HHHEEEEEEEEEEEEEESSSC--------------------SSSSSCCHHHHHHHHHHTTC
T ss_pred             HHHCCCCEEEEEEcccccccc--------------------cccccCCHHHHHHHHHHCCC
Confidence            999999999999766433210                    01223578999999999999

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.35  E-value=4.3e-07  Score=74.76  Aligned_cols=82  Identities=10%  Similarity=0.060  Sum_probs=57.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe----------------------EE
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM----------------------WI  237 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv----------------------~v  237 (333)
                      .....+|||+|||+|.++..+++ .+..+++++|+ +.+++.++++       +++                      .|
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i  120 (187)
T 2fhp_A           42 YFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV  120 (187)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEE
Confidence            34667999999999999999887 56679999999 8888776542       111                      23


Q ss_pred             EccCC--hhHHHHHHHHH--HHhCCCCcEEEEEeeec
Q 035738          238 LHDWN--DEHCLKLLKNC--YKSIPEDGKVIAVELML  270 (333)
Q Consensus       238 Lh~~~--~~~~~~lL~~~--~~~L~pgG~l~i~e~~~  270 (333)
                      +.+.+  ......+++.+  .+.|+|||.+++.....
T Consensus       121 ~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          121 LLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             EECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             EECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence            33222  12223566666  78899999998876543

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.35  E-value=7.1e-07  Score=81.21  Aligned_cols=82  Identities=17%  Similarity=0.161  Sum_probs=57.4

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-------CCe------------------
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH-------PCM------------------  235 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~gv------------------  235 (333)
                      +...+. ..+..+|||||||+|.++..++++ +..+++++|+..+++.+++.       .++                  
T Consensus        56 i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D  133 (340)
T 2fyt_A           56 IYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVD  133 (340)
T ss_dssp             HHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEE
T ss_pred             HHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEE
Confidence            334333 556789999999999999998887 45689999995477665431       111                  


Q ss_pred             EEEcc-----C-ChhHHHHHHHHHHHhCCCCcEEE
Q 035738          236 WILHD-----W-NDEHCLKLLKNCYKSIPEDGKVI  264 (333)
Q Consensus       236 ~vLh~-----~-~~~~~~~lL~~~~~~L~pgG~l~  264 (333)
                      .|+..     + .......+|+++.+.|+|||+++
T Consensus       134 ~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          134 VIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             EEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            22211     1 23344589999999999999987

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.35  E-value=1.1e-06  Score=80.52  Aligned_cols=90  Identities=17%  Similarity=0.155  Sum_probs=66.9

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC---CC---e--------------
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH---PC---M--------------  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---~g---v--------------  235 (333)
                      +..++.... +.+..+|||+|||+|.++..++... |+.+++++|+ +.+++.|+++   .+   +              
T Consensus       192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~  270 (354)
T 3tma_A          192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF  270 (354)
T ss_dssp             HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred             HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence            344445444 7778899999999999999999988 8999999999 8888877643   11   1              


Q ss_pred             ----EEEccCC-------hhH----HHHHHHHHHHhCCCCcEEEEEee
Q 035738          236 ----WILHDWN-------DEH----CLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 ----~vLh~~~-------~~~----~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                          .|+.+.|       ...    ..++++++.+.|+|||+++++..
T Consensus       271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~  318 (354)
T 3tma_A          271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL  318 (354)
T ss_dssp             CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred             CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence                3333322       111    25789999999999999998754

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.34  E-value=1.2e-06  Score=78.91  Aligned_cols=82  Identities=12%  Similarity=0.073  Sum_probs=61.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------CCe------------------EEEcc-
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------PCM------------------WILHD-  240 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~gv------------------~vLh~-  240 (333)
                      ..+..+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++      .++                  .|+.+ 
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~  195 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA  195 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence            66778999999999999999999875 589999999 7777765532      111                  33332 


Q ss_pred             -----------------CChhH-------HHHHHHHHHHhCCCCcEEEEEeee
Q 035738          241 -----------------WNDEH-------CLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       241 -----------------~~~~~-------~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                                       |+.++       ..++|+++.+.|+|||++++....
T Consensus       196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs  248 (315)
T 1ixk_A          196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS  248 (315)
T ss_dssp             CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence                             22221       148999999999999999887653

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.34  E-value=2.8e-07  Score=82.94  Aligned_cols=80  Identities=20%  Similarity=0.276  Sum_probs=60.7

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----------CCe-------------------EE
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----------PCM-------------------WI  237 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~gv-------------------~v  237 (333)
                      .++.+|||||||+|..+..+++..|..+++++|+ +.+++.++++           +.+                   .|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            3568999999999999999999888889999999 7887765431           122                   33


Q ss_pred             EccCChhH----------HHHHHHHHHHhCCCCcEEEEEee
Q 035738          238 LHDWNDEH----------CLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       238 Lh~~~~~~----------~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      +.+.+++.          ..+++++++++|+|||.+++...
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  196 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence            33332221          35899999999999999998753

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.33  E-value=6.5e-07  Score=77.68  Aligned_cols=50  Identities=22%  Similarity=0.147  Sum_probs=38.5

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHH--CCCCeEEEeec-hhHhhhCC
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTK--YPYIKGINFDL-PHVIEHVP  230 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~  230 (333)
                      .+++.+. .....+|||+|||+|.++..+++.  ++..+++++|+ +.+++.|+
T Consensus        42 ~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~   94 (250)
T 1o9g_A           42 RALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAA   94 (250)
T ss_dssp             HHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHH
T ss_pred             HHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHH
Confidence            3344333 335679999999999999999998  78889999999 77765443

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.32  E-value=1.9e-07  Score=85.27  Aligned_cols=86  Identities=16%  Similarity=0.072  Sum_probs=61.5

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-------CCe-----------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH-------PCM-----------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~gv-----------------  235 (333)
                      .+...+. ..+..+|||||||+|.++..++++ +..+++++|+..+++.+++.       ..+                 
T Consensus        41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D  118 (348)
T 2y1w_A           41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD  118 (348)
T ss_dssp             HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred             HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCcee
Confidence            3445444 456789999999999999988875 56799999995566554321       111                 


Q ss_pred             -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738          236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                           .+++++..+.....+.++++.|+|||++++.-
T Consensus       119 ~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          119 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             EEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             EEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence                 24455555666788889999999999998543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.32  E-value=3.3e-07  Score=87.17  Aligned_cols=86  Identities=16%  Similarity=0.083  Sum_probs=61.7

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-------CCe---------------
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH-------PCM---------------  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~gv---------------  235 (333)
                      ...+++.+. ..+..+|||||||+|.++..+++ .+..+++++|++.+++.|++.       ..+               
T Consensus       147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~  224 (480)
T 3b3j_A          147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ  224 (480)
T ss_dssp             HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred             HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence            344555554 45678999999999999998877 677899999995576655431       111               


Q ss_pred             --E-----EEccCChhHHHHHHHHHHHhCCCCcEEEE
Q 035738          236 --W-----ILHDWNDEHCLKLLKNCYKSIPEDGKVIA  265 (333)
Q Consensus       236 --~-----vLh~~~~~~~~~lL~~~~~~L~pgG~l~i  265 (333)
                        .     +++.+.++.....+.++++.|+|||++++
T Consensus       225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence              2     22334446667788899999999999885

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.32  E-value=2.8e-07  Score=81.35  Aligned_cols=78  Identities=26%  Similarity=0.307  Sum_probs=60.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EEEc
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WILH  239 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~vLh  239 (333)
                      ++.+|||||||+|..+..+++..+..+++++|+ |.+++.++++          +.+                   .|+.
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            568999999999999999998878889999999 8888876532          222                   3444


Q ss_pred             cCChhH-------HHHHHHHHHHhCCCCcEEEEEe
Q 035738          240 DWNDEH-------CLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       240 ~~~~~~-------~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      +.+++.       ..+++++++++|+|||.+++..
T Consensus       155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            443321       1479999999999999988863

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.31  E-value=7.9e-07  Score=77.84  Aligned_cols=75  Identities=12%  Similarity=0.073  Sum_probs=60.8

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe---------------EEEccCC
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM---------------WILHDWN  242 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv---------------~vLh~~~  242 (333)
                      .++.+|||||||+|..+..+++. + .+++++|+ +.+++.|+++          +.+               .|+.+.+
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d~~  148 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQE  148 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEESSC
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEECCC
Confidence            35689999999999999999988 7 89999999 8999988764          122               3444555


Q ss_pred             hhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738          243 DEHCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       243 ~~~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      ++.  ..++++++.|+|||.+++..
T Consensus       149 dp~--~~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          149 PDI--HRIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             CCH--HHHHHHHTTEEEEEEEEEEE
T ss_pred             ChH--HHHHHHHHhcCCCcEEEEEc
Confidence            554  58999999999999998863

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.31  E-value=4.8e-07  Score=83.05  Aligned_cols=79  Identities=10%  Similarity=0.116  Sum_probs=56.4

Q ss_pred             CCCCeEEEEcCC------ccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC------------C-------C-e-EE--
Q 035738          189 DNIKQLVDVGGG------IGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH------------P-------C-M-WI--  237 (333)
Q Consensus       189 ~~~~~vlDVGgG------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~------------~-------g-v-~v--  237 (333)
                      .+..+|||||||      +|..+..++++ +|+.+++++|+ +.+.....+.            .       + . .|  
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVis  294 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHVDELRIRTIQGDQNDAEFLDRIARRYGPFDIVID  294 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGGCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEE
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhhcCCCcEEEEecccccchhhhhhcccCCccEEEE
Confidence            356899999999      77777777665 69999999999 6664321110            0       0 0 22  


Q ss_pred             --EccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          238 --LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       238 --Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                        .|.+  ++..+.|+++++.|||||+++|.|..
T Consensus       295 dgsH~~--~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          295 DGSHIN--AHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             CSCCCH--HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             CCcccc--hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence              2333  34468999999999999999999875

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.30  E-value=5.3e-07  Score=81.26  Aligned_cols=81  Identities=14%  Similarity=0.208  Sum_probs=60.2

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------CCe----------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------PCM----------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~gv----------------  235 (333)
                      .++..+. ..+..+|||||||+|.++..+++..+ +.+++++|+ +.+++.++++      +++                
T Consensus        66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~  144 (317)
T 1dl5_A           66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP  144 (317)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCC
Confidence            4444454 66778999999999999999999887 488999999 7888776542      122                


Q ss_pred             -------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          236 -------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       236 -------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                             .++|+++        +++.+.|+|||++++....
T Consensus       145 fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          145 YDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             EEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred             eEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence                   2223322        5778899999999998643

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.30  E-value=4.9e-07  Score=80.93  Aligned_cols=80  Identities=18%  Similarity=0.223  Sum_probs=60.5

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EEE
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WIL  238 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~vL  238 (333)
                      .++.+|||||||+|..+..++++.|..+++++|+ +.+++.++++          +.+                   .|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            4568999999999999999999888899999999 8888766532          122                   344


Q ss_pred             ccCChh-------HHHHHHHHHHHhCCCCcEEEEEee
Q 035738          239 HDWNDE-------HCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       239 h~~~~~-------~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      .+.++.       ...+++++++++|+|||.+++...
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  210 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE  210 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence            344432       124689999999999999988664

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.29  E-value=4.4e-07  Score=77.99  Aligned_cols=86  Identities=16%  Similarity=0.184  Sum_probs=61.0

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe---------------
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM---------------  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv---------------  235 (333)
                      ...+++.++ ..+..+|||||||+|.++..+++..+ .+++++|+ +.+++.++++      .++               
T Consensus        80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (235)
T 1jg1_A           80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA  157 (235)
T ss_dssp             HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence            344555555 66778999999999999999999988 88999998 7887776542      122               


Q ss_pred             ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                         .|+....-   ..+.+++.+.|+|||++++.-.
T Consensus       158 ~fD~Ii~~~~~---~~~~~~~~~~L~pgG~lvi~~~  190 (235)
T 1jg1_A          158 PYDVIIVTAGA---PKIPEPLIEQLKIGGKLIIPVG  190 (235)
T ss_dssp             CEEEEEECSBB---SSCCHHHHHTEEEEEEEEEEEC
T ss_pred             CccEEEECCcH---HHHHHHHHHhcCCCcEEEEEEe
Confidence               11111110   1234578899999999998765

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.28  E-value=7.5e-07  Score=76.11  Aligned_cols=80  Identities=14%  Similarity=0.164  Sum_probs=59.1

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CCe------------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PCM------------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~gv------------------  235 (333)
                      ..+++.+. ..+..+|||||||+|.++..+++..  .+++++|+ +.+++.+++.    .++                  
T Consensus        60 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD  136 (231)
T 1vbf_A           60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD  136 (231)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence            34555554 6677899999999999999999987  68999999 7777766432    011                  


Q ss_pred             -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                           .++|+++        .++.+.|+|||++++....
T Consensus       137 ~v~~~~~~~~~~--------~~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          137 RVVVWATAPTLL--------CKPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             EEEESSBBSSCC--------HHHHHTEEEEEEEEEEECS
T ss_pred             EEEECCcHHHHH--------HHHHHHcCCCcEEEEEEcC
Confidence                 3334333        4688999999999998753

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.27  E-value=4.4e-07  Score=82.29  Aligned_cols=79  Identities=16%  Similarity=0.246  Sum_probs=60.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe--------------------E
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM--------------------W  236 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv--------------------~  236 (333)
                      ..++.+|||||||+|..+..+++..|..+++++|+ +.+++.|+++          +.+                    .
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl  197 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  197 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence            34668999999999999999999888899999999 8888766532          112                    3


Q ss_pred             EEccCCh----hH---HHHHHHHHHHhCCCCcEEEEE
Q 035738          237 ILHDWND----EH---CLKLLKNCYKSIPEDGKVIAV  266 (333)
Q Consensus       237 vLh~~~~----~~---~~~lL~~~~~~L~pgG~l~i~  266 (333)
                      |+.+.++    ..   ..+++++++++|+|||++++.
T Consensus       198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            3333321    11   358999999999999999886

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.26  E-value=7.5e-07  Score=77.92  Aligned_cols=43  Identities=16%  Similarity=0.251  Sum_probs=37.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP  230 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~  230 (333)
                      ..+..+|||+|||+|..+..+++++|..+++++|+ +.+++.++
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~   77 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFAR   77 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHH
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence            55678999999999999999999999999999999 77776543

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.26  E-value=1.9e-06  Score=76.39  Aligned_cols=41  Identities=20%  Similarity=0.246  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ...+|||+|||+|..+..+++. |+.+++++|+ +.+++.+++
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~  164 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARK  164 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence            4568999999999999999999 9999999999 888887764

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.25  E-value=4.5e-07  Score=79.89  Aligned_cols=83  Identities=12%  Similarity=0.133  Sum_probs=65.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------EEEccCCh
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------WILHDWND  243 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------~vLh~~~~  243 (333)
                      +.+..+|||+|||+|.++..+++..+..+++++|+ |.+++.++++      .++                 .|+.+.+.
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~  196 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH  196 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence            55678999999999999999999998889999999 8888877642      122                 33333332


Q ss_pred             hHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738          244 EHCLKLLKNCYKSIPEDGKVIAVELMLP  271 (333)
Q Consensus       244 ~~~~~lL~~~~~~L~pgG~l~i~e~~~~  271 (333)
                       ...++++++.+.|+|||++++.+....
T Consensus       197 -~~~~~l~~~~~~LkpgG~l~~s~~~~~  223 (272)
T 3a27_A          197 -KTHKFLDKTFEFLKDRGVIHYHETVAE  223 (272)
T ss_dssp             -SGGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred             -cHHHHHHHHHHHcCCCCEEEEEEcCcc
Confidence             345789999999999999998887543

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.22  E-value=7.6e-07  Score=80.03  Aligned_cols=78  Identities=21%  Similarity=0.267  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EEEc
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WILH  239 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~vLh  239 (333)
                      ++.+|||||||+|..+..+++..|..+++++|+ +.+++.|+++          +.+                   .|+.
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  187 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  187 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence            567999999999999999999888899999999 8888766532          112                   3443


Q ss_pred             cCChh----HH---HHHHHHHHHhCCCCcEEEEEe
Q 035738          240 DWNDE----HC---LKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       240 ~~~~~----~~---~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      +.+++    ..   .+++++++++|+|||.+++..
T Consensus       188 d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          188 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             CCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             cCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            43321    11   589999999999999998865

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.22  E-value=6.7e-07  Score=79.24  Aligned_cols=79  Identities=19%  Similarity=0.212  Sum_probs=59.8

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EEE
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WIL  238 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~vL  238 (333)
                      .++.+|||||||+|..+..+++..|..+++++|+ +.+++.++++          +++                   .|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            4568999999999999999998888889999999 8888766532          122                   333


Q ss_pred             ccCCh----hHH---HHHHHHHHHhCCCCcEEEEEe
Q 035738          239 HDWND----EHC---LKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       239 h~~~~----~~~---~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      .+.++    ...   .+++++++++|+|||.+++..
T Consensus       157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            33221    111   589999999999999998763

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.22  E-value=1.2e-06  Score=77.42  Aligned_cols=77  Identities=19%  Similarity=0.283  Sum_probs=57.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC----------------CCCe-----------------
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP----------------HPCM-----------------  235 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~gv-----------------  235 (333)
                      .+.+|||||||+|..+..+++. |..+++++|+ |.+++.+++                .+++                 
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f  153 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  153 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence            5689999999999999999998 8889999999 788776542                1222                 


Q ss_pred             -EEEccCCh-----hH--HHHHHHHHHHhCCCCcEEEEEe
Q 035738          236 -WILHDWND-----EH--CLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       236 -~vLh~~~~-----~~--~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                       .|+.+.++     ..  ..++++++++.|+|||.+++..
T Consensus       154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence             33334332     11  2578999999999999998864

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.21  E-value=9.5e-07  Score=81.51  Aligned_cols=81  Identities=12%  Similarity=0.015  Sum_probs=58.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC------CC-e-----------------EE-----E
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH------PC-M-----------------WI-----L  238 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------~g-v-----------------~v-----L  238 (333)
                      ..+..+|||||||+|.++..++++. ..+++++|+..+++.++++      .+ +                 .|     .
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~  139 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG  139 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence            5567899999999999999999873 3489999997766665432      11 1                 11     2


Q ss_pred             ccCC-hhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          239 HDWN-DEHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       239 h~~~-~~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                      |... +.....+++++.+.|+|||.+++.+..
T Consensus       140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~  171 (376)
T 3r0q_C          140 YFLLRESMFDSVISARDRWLKPTGVMYPSHAR  171 (376)
T ss_dssp             TTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred             hcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence            3332 233557999999999999999876654

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.21  E-value=6.4e-07  Score=82.69  Aligned_cols=77  Identities=12%  Similarity=0.087  Sum_probs=59.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---C--Ce------------------EE-----Ecc
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---P--CM------------------WI-----LHD  240 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--gv------------------~v-----Lh~  240 (333)
                      ...+|||+|||+|.++..+++.  +.+++++|+ +.+++.++++   .  .+                  .|     +|.
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~  310 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV  310 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence            5679999999999999999987  468999999 7888776542   0  01                  22     232


Q ss_pred             ---CChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          241 ---WNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       241 ---~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                         ...+...++++++.+.|+|||+++|+..
T Consensus       311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n  341 (381)
T 3dmg_A          311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSN  341 (381)
T ss_dssp             TCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence               2245567899999999999999999754

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.21  E-value=7.3e-07  Score=72.17  Aligned_cols=78  Identities=8%  Similarity=0.026  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---C--C---------------------e-EEEcc-
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---P--C---------------------M-WILHD-  240 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--g---------------------v-~vLh~-  240 (333)
                      ...+|||+|||+|.++..+++..++  ++++|+ +.+++.++++   .  +                     . .|+.+ 
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            5679999999999999999998776  999999 7888776531   0  1                     1 22322 


Q ss_pred             -CChhHHHHHHHHHH--HhCCCCcEEEEEeeec
Q 035738          241 -WNDEHCLKLLKNCY--KSIPEDGKVIAVELML  270 (333)
Q Consensus       241 -~~~~~~~~lL~~~~--~~L~pgG~l~i~e~~~  270 (333)
                       +. ....++++.+.  +.|+|||++++.....
T Consensus       119 ~~~-~~~~~~~~~~~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          119 PYA-MDLAALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             CTT-SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             CCc-hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence             21 11225566666  9999999998876643

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.20  E-value=6.8e-07  Score=80.67  Aligned_cols=78  Identities=21%  Similarity=0.220  Sum_probs=59.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EEEc
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WILH  239 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~vLh  239 (333)
                      ++.+|||||||+|..+..+++..|..+++++|+ +.+++.++++          +.+                   .|+.
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~  195 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  195 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence            568999999999999999998878899999999 8888766432          122                   3333


Q ss_pred             cCCh-----hH--HHHHHHHHHHhCCCCcEEEEEe
Q 035738          240 DWND-----EH--CLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       240 ~~~~-----~~--~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      +.++     ..  ..++++++++.|+|||.+++..
T Consensus       196 d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          196 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             ECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            3321     11  1589999999999999998864

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.20  E-value=6.6e-07  Score=81.73  Aligned_cols=76  Identities=17%  Similarity=0.139  Sum_probs=55.3

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC------CC-e------------------EEE-----
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH------PC-M------------------WIL-----  238 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------~g-v------------------~vL-----  238 (333)
                      .+..+|||||||+|.++..++++ +..+++++|+..+++.|+++      .+ +                  .|+     
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~  143 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  143 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence            35689999999999999999987 66799999996577665531      11 1                  222     


Q ss_pred             ccC-ChhHHHHHHHHHHHhCCCCcEEEE
Q 035738          239 HDW-NDEHCLKLLKNCYKSIPEDGKVIA  265 (333)
Q Consensus       239 h~~-~~~~~~~lL~~~~~~L~pgG~l~i  265 (333)
                      +.+ ..+....+|+.+.+.|+|||+++.
T Consensus       144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          144 YCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            212 223445899999999999999873

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.19  E-value=1.5e-06  Score=72.89  Aligned_cols=80  Identities=9%  Similarity=0.007  Sum_probs=56.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-------------------EEEccCC-
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-------------------WILHDWN-  242 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-------------------~vLh~~~-  242 (333)
                      ...+|||+|||+|.++..++.+.. .+++++|+ +.+++.++++      .++                   .|+.+.+ 
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~  132 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF  132 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence            357999999999999998887653 38999999 8888877542      121                   3333322 


Q ss_pred             -hhHHHHHHHHHHH--hCCCCcEEEEEeeec
Q 035738          243 -DEHCLKLLKNCYK--SIPEDGKVIAVELML  270 (333)
Q Consensus       243 -~~~~~~lL~~~~~--~L~pgG~l~i~e~~~  270 (333)
                       ......+++.+.+  .|+|||++++.....
T Consensus       133 ~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          133 RRGLLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             STTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             CCCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence             2234467888876  499999998776643

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.13  E-value=5.2e-06  Score=73.15  Aligned_cols=87  Identities=15%  Similarity=0.041  Sum_probs=56.6

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC--C------Ce---------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH--P------CM---------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------gv---------------  235 (333)
                      .++.+. ..+.+..+|||||||+|.++..++++   .+++++|+..++..+++.  +      ++               
T Consensus        72 ~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~  147 (276)
T 2wa2_A           72 AWIDER-GGVELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPF  147 (276)
T ss_dssp             HHHHHT-TSCCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCC
T ss_pred             HHHHHc-CCCCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCC
Confidence            344444 22557789999999999999999887   579999994453322111  1      11               


Q ss_pred             ---EEEccCC----h----hH-HHHHHHHHHHhCCCCc--EEEEEeee
Q 035738          236 ---WILHDWN----D----EH-CLKLLKNCYKSIPEDG--KVIAVELM  269 (333)
Q Consensus       236 ---~vLh~~~----~----~~-~~~lL~~~~~~L~pgG--~l~i~e~~  269 (333)
                         .|+.++.    .    .. ..++|+.+.++|+|||  .+++....
T Consensus       148 ~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          148 QADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence               3333322    1    11 1248999999999999  88885443

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.13  E-value=2.7e-06  Score=74.96  Aligned_cols=83  Identities=10%  Similarity=0.057  Sum_probs=61.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC------CCe----------------------EE
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH------PCM----------------------WI  237 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~gv----------------------~v  237 (333)
                      .....+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++      .++                      .|
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  160 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI  160 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence            556789999999999999999998876 89999999 7777765432      121                      23


Q ss_pred             Ecc--------------CCh-------hHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          238 LHD--------------WND-------EHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       238 Lh~--------------~~~-------~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                      +.+              |+.       ....++|+++.+.|+|||++++.....
T Consensus       161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence            322              111       112589999999999999998876543

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.12  E-value=1.8e-06  Score=72.31  Aligned_cols=80  Identities=9%  Similarity=-0.043  Sum_probs=55.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--------CC--------------------e-EEEc
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--------PC--------------------M-WILH  239 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~g--------------------v-~vLh  239 (333)
                      ...+|||+|||+|.++..++.+.. .+++++|+ +.+++.++++        .+                    . .|+.
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  131 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  131 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence            357899999999999998777643 58999999 7888766431        11                    1 1222


Q ss_pred             cCC--hhHHHHHHHHH--HHhCCCCcEEEEEeeec
Q 035738          240 DWN--DEHCLKLLKNC--YKSIPEDGKVIAVELML  270 (333)
Q Consensus       240 ~~~--~~~~~~lL~~~--~~~L~pgG~l~i~e~~~  270 (333)
                      +.+  .....++++.+  .+.|+|||.+++.....
T Consensus       132 ~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          132 DPPFHFNLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             CCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             CCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            222  23445788888  56799999998877643

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.12  E-value=5.8e-06  Score=72.40  Aligned_cols=79  Identities=14%  Similarity=0.032  Sum_probs=53.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC--C------Ce------------------EEEccC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH--P------CM------------------WILHDW  241 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------gv------------------~vLh~~  241 (333)
                      +.+..+|||||||+|.++..+++.   .+++++|+..++..+++.  +      ++                  .|+.++
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~  148 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV  148 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence            567789999999999999999887   579999994453222110  1      11                  333332


Q ss_pred             C----hh----H-HHHHHHHHHHhCCCCc--EEEEEeee
Q 035738          242 N----DE----H-CLKLLKNCYKSIPEDG--KVIAVELM  269 (333)
Q Consensus       242 ~----~~----~-~~~lL~~~~~~L~pgG--~l~i~e~~  269 (333)
                      .    ..    . ...+|+.+.++|+|||  .+++-...
T Consensus       149 ~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          149 GESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             CCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             cccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            2    11    1 1248999999999999  88885544

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.12  E-value=1.4e-06  Score=78.77  Aligned_cols=76  Identities=18%  Similarity=0.149  Sum_probs=53.8

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC------C-Ce------------------EEE-----
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH------P-CM------------------WIL-----  238 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------~-gv------------------~vL-----  238 (333)
                      .+..+|||||||+|.++..++++ +..+++++|+..+++.+++.      . .+                  .|+     
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  115 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence            35679999999999999988876 55689999996566655431      0 11                  222     


Q ss_pred             ccC-ChhHHHHHHHHHHHhCCCCcEEEE
Q 035738          239 HDW-NDEHCLKLLKNCYKSIPEDGKVIA  265 (333)
Q Consensus       239 h~~-~~~~~~~lL~~~~~~L~pgG~l~i  265 (333)
                      +.+ .+.....+|+.+.+.|+|||+++.
T Consensus       116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          116 YFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            222 223345899999999999999873

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.11  E-value=2.1e-06  Score=73.02  Aligned_cols=78  Identities=14%  Similarity=0.106  Sum_probs=57.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC-----------CCe------------------E
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH-----------PCM------------------W  236 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----------~gv------------------~  236 (333)
                      ..+..+|||||||+|..+..+++.. |..+++++|+ +.+++.++++           .++                  .
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            4567899999999999999999885 6679999999 7777766431           122                  2


Q ss_pred             EEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      |+....   +..+++++.+.|+|||++++...
T Consensus       155 i~~~~~---~~~~~~~~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          155 IHVGAA---APVVPQALIDQLKPGGRLILPVG  183 (226)
T ss_dssp             EEECSB---BSSCCHHHHHTEEEEEEEEEEES
T ss_pred             EEECCc---hHHHHHHHHHhcCCCcEEEEEEe
Confidence            221111   12567899999999999999765

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.10  E-value=1.1e-05  Score=72.00  Aligned_cols=77  Identities=16%  Similarity=0.094  Sum_probs=51.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-----hhHhhhCC--CC--CCe-----------------EEEccC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-----PHVIEHVP--PH--PCM-----------------WILHDW  241 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~--~~--~gv-----------------~vLh~~  241 (333)
                      +.+..+|||||||+|.++..++++   .+++++|+     +..++..+  ..  +++                 .|+.++
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~  156 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI  156 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence            556789999999999999999987   36888887     43322211  10  111                 444443


Q ss_pred             C--------hhH-HHHHHHHHHHhCCCCcEEEEEe
Q 035738          242 N--------DEH-CLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       242 ~--------~~~-~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      .        +.. ...+|+.++++|+|||.+++..
T Consensus       157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv  191 (305)
T 2p41_A          157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV  191 (305)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            3        111 2258999999999999888743

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.10  E-value=5.1e-06  Score=73.09  Aligned_cols=105  Identities=13%  Similarity=0.105  Sum_probs=76.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC-e-----------------EEEccCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC-M-----------------WILHDWN  242 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g-v-----------------~vLh~~~  242 (333)
                      ..++.+|||+|||+|.++..++++. ..+++++|+ |.+++.++++      .+ +                 .|+.+.+
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p  201 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV  201 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence            4467899999999999999998764 468999999 8888877653      11 1                 4555544


Q ss_pred             hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCee
Q 035738          243 DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGI  317 (333)
Q Consensus       243 ~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~  317 (333)
                      . .+...|..+.+.|+|||.|.+.+....+..                       .....+.++++.++.|+++.
T Consensus       202 ~-~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~-----------------------~~~~~e~i~~~~~~~g~~v~  252 (278)
T 3k6r_A          202 V-RTHEFIPKALSIAKDGAIIHYHNTVPEKLM-----------------------PREPFETFKRITKEYGYDVE  252 (278)
T ss_dssp             S-SGGGGHHHHHHHEEEEEEEEEEEEEEGGGT-----------------------TTTTHHHHHHHHHHTTCEEE
T ss_pred             C-cHHHHHHHHHHHcCCCCEEEEEeeeccccc-----------------------chhHHHHHHHHHHHcCCcEE
Confidence            2 234789999999999999998887643210                       01235677888899998653

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.08  E-value=3.6e-06  Score=74.41  Aligned_cols=76  Identities=12%  Similarity=0.116  Sum_probs=53.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec--hhHhhhCCCCC----------------Ce--------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL--PHVIEHVPPHP----------------CM--------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~----------------gv--------------  235 (333)
                      .....+|||||||+|.++..+++.. ..+++++|+  +.+++.++++.                ++              
T Consensus        77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  155 (281)
T 3bzb_A           77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL  155 (281)
T ss_dssp             GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred             hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence            3456799999999999999888753 358999999  45654332110                11              


Q ss_pred             ---------------EEEccCChhHHHHHHHHHHHhCC---C--CcEEEEE
Q 035738          236 ---------------WILHDWNDEHCLKLLKNCYKSIP---E--DGKVIAV  266 (333)
Q Consensus       236 ---------------~vLh~~~~~~~~~lL~~~~~~L~---p--gG~l~i~  266 (333)
                                     .++++  .+....+++.+.+.|+   |  ||+++++
T Consensus       156 ~~~~~~~~fD~Ii~~dvl~~--~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~  204 (281)
T 3bzb_A          156 QRCTGLQRFQVVLLADLLSF--HQAHDALLRSVKMLLALPANDPTAVALVT  204 (281)
T ss_dssp             HHHHSCSSBSEEEEESCCSC--GGGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred             HhhccCCCCCEEEEeCcccC--hHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence                           22232  3344589999999999   9  9987774

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.06  E-value=1.7e-06  Score=73.86  Aligned_cols=76  Identities=9%  Similarity=0.082  Sum_probs=60.0

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----C------------------Ce----EEEcc
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----P------------------CM----WILHD  240 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~------------------gv----~vLh~  240 (333)
                      ..+.+|||||||+|-++..+.   |..+++++|+ +.+++.++++     +                  ++    .++|.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~  180 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL  180 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence            568899999999999999888   8999999999 8888877653     0                  01    33477


Q ss_pred             CChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          241 WNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      +.+++....+ ++.++|++++.++-.+.
T Consensus       181 LE~q~~~~~~-~ll~aL~~~~vvVsfPt  207 (253)
T 3frh_A          181 LEREQAGSAM-ALLQSLNTPRMAVSFPT  207 (253)
T ss_dssp             HHHHSTTHHH-HHHHHCBCSEEEEEEEC
T ss_pred             hhhhchhhHH-HHHHHhcCCCEEEEcCh
Confidence            7766655566 88899999988887773

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.03  E-value=2.2e-05  Score=72.23  Aligned_cols=45  Identities=11%  Similarity=-0.043  Sum_probs=39.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      +.+..+|||+|||+|.++..++...+..+++++|+ +.+++.|+++
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n  260 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMN  260 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHH
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Confidence            55678999999999999999999988778999999 8899888754

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.03  E-value=3.2e-06  Score=72.00  Aligned_cols=82  Identities=17%  Similarity=0.191  Sum_probs=58.1

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHC-----CCCeEEEeec-hhHhhhCCCC-----------CCeEEEc-cCCh------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKY-----PYIKGINFDL-PHVIEHVPPH-----------PCMWILH-DWND------  243 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~~-----------~gv~vLh-~~~~------  243 (333)
                      ..+..+|||||||+|.++..+++..     |+.+++++|+ +.+++.++++           .++.+.+ +..+      
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            5567899999999999999999986     5789999999 7777766532           1221110 1000      


Q ss_pred             ------------hHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          244 ------------EHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       244 ------------~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                                  .....+++++.+.|+|||++++.-..
T Consensus       158 ~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          158 KELGLFDAIHVGASASELPEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             HHHCCEEEEEECSBBSSCCHHHHHHEEEEEEEEEEEEE
T ss_pred             ccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEcc
Confidence                        00114678999999999999988664

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.01  E-value=1.3e-05  Score=72.46  Aligned_cols=78  Identities=14%  Similarity=0.116  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C--Ce----------------------EEE
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P--CM----------------------WIL  238 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--gv----------------------~vL  238 (333)
                      +..+|||+|||+|.++..+++...  +++++|+ +.+++.++++      .  .+                      .|+
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            457999999999999999998644  8999999 7888776542      1  12                      232


Q ss_pred             ccCC-------------hhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          239 HDWN-------------DEHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       239 h~~~-------------~~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                      .+.|             .+...++++++.+.|+|||.+++....
T Consensus       231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~  274 (332)
T 2igt_A          231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  274 (332)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence            2222             123458999999999999997776653

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.98  E-value=2.2e-06  Score=73.15  Aligned_cols=78  Identities=10%  Similarity=0.105  Sum_probs=55.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCC------CCeEEEeec-hhHhhhCCCC-----------CCe--------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYP------YIKGINFDL-PHVIEHVPPH-----------PCM--------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~~-----------~gv--------------  235 (333)
                      ..+..+|||||||+|.++..+++..+      ..+++++|+ +.+++.++++           .++              
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  161 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN  161 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence            45678999999999999999998765      368999998 7777765431           112              


Q ss_pred             ----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                          .|+....-   ..+++++.+.|+|||++++.-.
T Consensus       162 ~~fD~I~~~~~~---~~~~~~~~~~LkpgG~lvi~~~  195 (227)
T 1r18_A          162 APYNAIHVGAAA---PDTPTELINQLASGGRLIVPVG  195 (227)
T ss_dssp             CSEEEEEECSCB---SSCCHHHHHTEEEEEEEEEEES
T ss_pred             CCccEEEECCch---HHHHHHHHHHhcCCCEEEEEEe
Confidence                11111111   1356889999999999988754

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=97.98  E-value=3.5e-06  Score=82.02  Aligned_cols=81  Identities=15%  Similarity=0.220  Sum_probs=60.6

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----C--Ce-------------------------E
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----P--CM-------------------------W  236 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~--gv-------------------------~  236 (333)
                      .++.+|||||||+|.++..+++.  +.+++|+|+ +.+++.|+.+    .  ++                         .
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e  142 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS  142 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred             CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence            35689999999999999999987  468999999 8888876532    1  11                         5


Q ss_pred             EEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738          237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLP  271 (333)
Q Consensus       237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~  271 (333)
                      +||+++++....-+.++.+.|+++++-++...+..
T Consensus       143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~  177 (569)
T 4azs_A          143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVK  177 (569)
T ss_dssp             CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCT
T ss_pred             chhcCCCHHHHHHHHHHHHHhccccceeeEEeccc
Confidence            67777777645555667778888887777766543

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.97  E-value=2.4e-07  Score=79.79  Aligned_cols=40  Identities=20%  Similarity=0.222  Sum_probs=35.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ...+|||+|||+|.++..+++..  .+++++|+ +.+++.+++
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~  118 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARN  118 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHH
Confidence            56899999999999999999875  78999999 888887764

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=97.96  E-value=2.3e-05  Score=73.09  Aligned_cols=87  Identities=13%  Similarity=0.154  Sum_probs=61.1

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC-----------C--Ce-EEEcc----
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH-----------P--CM-WILHD----  240 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----------~--gv-~vLh~----  240 (333)
                      +++.+. .....+|||+|||+|.++..+++++ +..+++++|+ +.+++.|...           +  .. .|+.+    
T Consensus        31 ~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~~~~~fD~Ii~NPPy~  109 (421)
T 2ih2_A           31 MVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEPGEAFDLILGNPPYG  109 (421)
T ss_dssp             HHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCCSSCEEEEEECCCCC
T ss_pred             HHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeCChhhcCccCCCCEEEECcCcc
Confidence            334443 3345699999999999999999987 6789999999 7887766321           0  11 22221    


Q ss_pred             -----------CChhHH-----------------HHHHHHHHHhCCCCcEEEEEee
Q 035738          241 -----------WNDEHC-----------------LKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       241 -----------~~~~~~-----------------~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                                 .+++..                 ..+++++.+.|+|||+++++-+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p  165 (421)
T 2ih2_A          110 IVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP  165 (421)
T ss_dssp             CBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence                       222221                 1568999999999999998876

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=97.92  E-value=3.3e-06  Score=74.85  Aligned_cols=49  Identities=18%  Similarity=0.358  Sum_probs=39.4

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP  230 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~  230 (333)
                      ..+++.++ ..+..+|||||||+|.++..+++..  .+++++|+ +.+++.++
T Consensus        18 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~   67 (285)
T 1zq9_A           18 NSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELH   67 (285)
T ss_dssp             HHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHH
T ss_pred             HHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHH
Confidence            45555555 6677899999999999999999985  47999999 77776554

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.87  E-value=2.2e-05  Score=69.45  Aligned_cols=101  Identities=11%  Similarity=0.072  Sum_probs=66.3

Q ss_pred             CCCCCeEEEEcCC------ccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCC-C---------CC-e-EEEccCC-----
Q 035738          188 FDNIKQLVDVGGG------IGVTLQAITTKYP-YIKGINFDL-PHVIEHVPP-H---------PC-M-WILHDWN-----  242 (333)
Q Consensus       188 ~~~~~~vlDVGgG------~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-~---------~g-v-~vLh~~~-----  242 (333)
                      +.+..+|||+|||      +|.  ..+++..| +.+++++|+ +. ++.+.- .         ++ + .|+.+..     
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v~~v~~~i~gD~~~~~~~~~fD~Vvsn~~~~~~g  137 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-VSDADSTLIGDCATVHTANKWDLIISDMYDPRTK  137 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-BCSSSEEEESCGGGCCCSSCEEEEEECCCCCC--
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-CCCCEEEEECccccCCccCcccEEEEcCCccccc
Confidence            5678899999994      466  44566666 689999999 54 332221 1         11 1 3333321     


Q ss_pred             ---------hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCC
Q 035738          243 ---------DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAG  313 (333)
Q Consensus       243 ---------~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aG  313 (333)
                               .+...++|+.+++.|+|||++++......                             ..+++.+++++.|
T Consensus       138 ~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-----------------------------~~~~l~~~l~~~G  188 (290)
T 2xyq_A          138 HVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-----------------------------WNADLYKLMGHFS  188 (290)
T ss_dssp             -CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-----------------------------CCHHHHHHHTTEE
T ss_pred             cccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-----------------------------CHHHHHHHHHHcC
Confidence                     12245899999999999999998654211                             1236777888888


Q ss_pred             CCeeEEe
Q 035738          314 FSGISCE  320 (333)
Q Consensus       314 f~~~~~~  320 (333)
                      |..+++.
T Consensus       189 F~~v~~~  195 (290)
T 2xyq_A          189 WWTAFVT  195 (290)
T ss_dssp             EEEEEEE
T ss_pred             CcEEEEE
Confidence            8777665

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.84  E-value=2.3e-05  Score=72.56  Aligned_cols=78  Identities=14%  Similarity=0.145  Sum_probs=58.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC-e-----------------EEEccCCh-
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC-M-----------------WILHDWND-  243 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g-v-----------------~vLh~~~~-  243 (333)
                      ++.+|||+|||+|.++..+++...  +++++|+ +.+++.++++      .. +                 .|+.+.|. 
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f  291 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL  291 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred             CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence            478999999999999999998743  4999999 8888877653      10 1                 33333321 


Q ss_pred             -----------hHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          244 -----------EHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       244 -----------~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                                 ..-.++++.+.+.|+|||+++++...
T Consensus       292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s  328 (393)
T 4dmg_A          292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS  328 (393)
T ss_dssp             CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence                       12347899999999999999877763

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=97.83  E-value=1.3e-05  Score=74.14  Aligned_cols=77  Identities=10%  Similarity=0.059  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe----------------------EEEcc
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM----------------------WILHD  240 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv----------------------~vLh~  240 (333)
                      +..+|||+|||+|.++..+++.  ..+++++|+ +.+++.++++      .++                      .|+.+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d  286 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  286 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence            6679999999999999999988  568999999 8888877643      112                      33333


Q ss_pred             CCh------------hHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          241 WND------------EHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       241 ~~~------------~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      .|.            ....++++++.+.|+|||.+++...
T Consensus       287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  326 (382)
T 1wxx_A          287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  326 (382)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            321            3345789999999999999888775

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.82  E-value=6.8e-05  Score=68.63  Aligned_cols=75  Identities=11%  Similarity=0.022  Sum_probs=43.6

Q ss_pred             HHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhh----HH-HhhC----------CC--CCcCCHHHHHHHHH
Q 035738          248 KLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDV----LM-MIQS----------PG--GKERTRHEFMTLAT  310 (333)
Q Consensus       248 ~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~----~m-~~~~----------~~--g~~rt~~e~~~ll~  310 (333)
                      .+|+..++.|+|||++++.-...++............+.+.    .. +...          .+  -..++.+|++++++
T Consensus       206 ~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~  285 (374)
T 3b5i_A          206 EFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVD  285 (374)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHH
Confidence            46999999999999999988876553111000000000011    00 1000          01  12468999999998


Q ss_pred             -hCCCCeeEEeec
Q 035738          311 -GAGFSGISCERA  322 (333)
Q Consensus       311 -~aGf~~~~~~~~  322 (333)
                       +.||++.++...
T Consensus       286 ~~~~F~I~~le~~  298 (374)
T 3b5i_A          286 ANGSFAIDKLVVY  298 (374)
T ss_dssp             HHCSEEEEEEEEE
T ss_pred             hcCCcEEEEEEEE
Confidence             599998876543

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.81  E-value=1.4e-05  Score=75.39  Aligned_cols=83  Identities=13%  Similarity=0.159  Sum_probs=60.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC------CCe--------------------EEEc
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH------PCM--------------------WILH  239 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~gv--------------------~vLh  239 (333)
                      ...+.+|||+|||+|..+..+++..++ .+++++|+ +..++.++++      .++                    .|+.
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~  336 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL  336 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence            567789999999999999999999887 89999999 7766544321      111                    3332


Q ss_pred             c-----------CCh-------hHH-------HHHHHHHHHhCCCCcEEEEEeeec
Q 035738          240 D-----------WND-------EHC-------LKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       240 ~-----------~~~-------~~~-------~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                      +           .++       ++.       .++|+++.+.|+|||++++.+...
T Consensus       337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI  392 (450)
T ss_dssp             ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            1           111       111       578999999999999999887644

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=97.79  E-value=2e-05  Score=73.18  Aligned_cols=78  Identities=14%  Similarity=0.073  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C-Ce----------------------EEEc
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P-CM----------------------WILH  239 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-gv----------------------~vLh  239 (333)
                      +..+|||+|||+|.++..+++. +..+++++|+ +.+++.++++      . ++                      .|+.
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence            6689999999999999999986 4458999999 8888776542      1 22                      3333


Q ss_pred             cCCh------------hHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          240 DWND------------EHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       240 ~~~~------------~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      +.|.            .....+++++.+.|+|||.+++...
T Consensus       296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  336 (396)
T 2as0_A          296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  336 (396)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            3322            3456789999999999999888775

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=97.78  E-value=1.5e-05  Score=66.38  Aligned_cols=43  Identities=21%  Similarity=0.211  Sum_probs=35.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      .....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~   92 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKR   92 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHH
Confidence            445679999999999999999887 5557999999 888877654

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=97.78  E-value=1.5e-05  Score=75.09  Aligned_cols=81  Identities=10%  Similarity=0.095  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC---CC--e-------------------EEEcc-
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH---PC--M-------------------WILHD-  240 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~---~g--v-------------------~vLh~-  240 (333)
                      ...+.+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++   .|  +                   .|+-+ 
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~  178 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDA  178 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECC
Confidence            556789999999999999999998875 78999999 7787766542   00  1                   44422 


Q ss_pred             -----------------CChhHH-------HHHHHHHHHhCCCCcEEEEEee
Q 035738          241 -----------------WNDEHC-------LKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       241 -----------------~~~~~~-------~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                                       |+++..       .++|+++.+.|+|||+|+....
T Consensus       179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC  230 (464)
T 3m6w_A          179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC  230 (464)
T ss_dssp             CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred             CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence                             222222       5799999999999999987654

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=97.76  E-value=0.00011  Score=63.36  Aligned_cols=50  Identities=8%  Similarity=0.262  Sum_probs=40.4

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP  230 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~  230 (333)
                      ...+++.++ .....+|||||||+|.++..++++.  .+++++|+ +.+++.++
T Consensus        19 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~   69 (244)
T 1qam_A           19 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTE   69 (244)
T ss_dssp             HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHH
T ss_pred             HHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHH
Confidence            345566555 6677899999999999999999987  68999999 77877654

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=97.76  E-value=2.9e-05  Score=72.83  Aligned_cols=83  Identities=16%  Similarity=0.190  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---C--------------------C-e-EEEccC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---P--------------------C-M-WILHDW  241 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--------------------g-v-~vLh~~  241 (333)
                      ..+..+|||+|||+|..+..+++..++.+++++|+ +..++.++++   .                    + . .|+-+.
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~  323 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA  323 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence            55678999999999999999999999889999999 7766654321   0                    1 1 333221


Q ss_pred             -----------C-------hhHH-------HHHHHHHHHhCCCCcEEEEEeeec
Q 035738          242 -----------N-------DEHC-------LKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       242 -----------~-------~~~~-------~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                                 +       .++.       .++|+++.+.|+|||++++.+...
T Consensus       324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~  377 (429)
T 1sqg_A          324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  377 (429)
T ss_dssp             CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence                       1       1111       478999999999999999987543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=97.74  E-value=5.6e-05  Score=63.11  Aligned_cols=43  Identities=16%  Similarity=0.099  Sum_probs=35.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      .....+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~   90 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIE   90 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHH
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHH
Confidence            34567999999999999999988743 47999999 888887764

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=97.71  E-value=3.8e-05  Score=72.24  Aligned_cols=81  Identities=12%  Similarity=0.133  Sum_probs=60.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC------CCe-------------------EEEcc
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH------PCM-------------------WILHD  240 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~gv-------------------~vLh~  240 (333)
                      ...+.+|||+|||+|..+..+++..++ .+++++|+ +..++.++++      .++                   .||.+
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D  182 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD  182 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence            556789999999999999999988654 78999999 7777766542      122                   44443


Q ss_pred             CC------------------hhH-------HHHHHHHHHHhCCCCcEEEEEee
Q 035738          241 WN------------------DEH-------CLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       241 ~~------------------~~~-------~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      -|                  .+.       ..++|+++.+.|+|||+|+....
T Consensus       183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC  235 (456)
T 3m4x_A          183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC  235 (456)
T ss_dssp             CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred             CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            32                  111       13789999999999999887654

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=97.67  E-value=8.8e-05  Score=67.02  Aligned_cols=122  Identities=12%  Similarity=0.162  Sum_probs=85.9

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCC------------------------------C------
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPP------------------------------H------  232 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------------------------~------  232 (333)
                      .+...||.+|||.......+...+++++++-+|.|.+++..++                              +      
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            3568999999999999999999888988999999888653211                              1      


Q ss_pred             ----------------CC---e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccch--h
Q 035738          233 ----------------PC---M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDS--D  287 (333)
Q Consensus       233 ----------------~g---v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~--d  287 (333)
                                      ++   +    .+|++++++.+.++|+.+.+.+ |+|.+++.|.+.+..+..    .+...+  .
T Consensus       176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~----~fg~~m~~~  250 (334)
T 1rjd_A          176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPND----RFGAIMQSN  250 (334)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTC----CHHHHHHHH
T ss_pred             CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcc----hHHHHHHHH
Confidence                            00   0    7888999999999999999987 788888999987733211    111111  0


Q ss_pred             hHH-Hhh-CCC-CCcCCHHHHHHHHHhCCCC
Q 035738          288 VLM-MIQ-SPG-GKERTRHEFMTLATGAGFS  315 (333)
Q Consensus       288 ~~m-~~~-~~~-g~~rt~~e~~~ll~~aGf~  315 (333)
                      +.- ..+ ..+ ....+.++..++|.++||+
T Consensus       251 l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~  281 (334)
T 1rjd_A          251 LKESRNLEMPTLMTYNSKEKYASRWSAAPNV  281 (334)
T ss_dssp             HHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred             hhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence            000 100 011 2345889999999999997

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=97.66  E-value=1.3e-05  Score=72.94  Aligned_cols=81  Identities=10%  Similarity=0.165  Sum_probs=58.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCC-----CeEEEeec-hhHhhhCCCC---CC------------------e-EEEc
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPY-----IKGINFDL-PHVIEHVPPH---PC------------------M-WILH  239 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~---~g------------------v-~vLh  239 (333)
                      .....+|||+|||+|.++..+++..+.     .+++++|+ +.+++.|+.+   .+                  . .|+.
T Consensus       128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~  207 (344)
T 2f8l_A          128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS  207 (344)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred             CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEE
Confidence            345679999999999999999988764     68999999 7887766532   00                  0 2332


Q ss_pred             c-----CChhH----------------HHHHHHHHHHhCCCCcEEEEEee
Q 035738          240 D-----WNDEH----------------CLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       240 ~-----~~~~~----------------~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      +     ++.++                ...+++++.+.|+|||+++++.+
T Consensus       208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p  257 (344)
T 2f8l_A          208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP  257 (344)
T ss_dssp             ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence            2     22221                12589999999999999988876

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=97.63  E-value=2.2e-05  Score=72.08  Aligned_cols=75  Identities=16%  Similarity=0.225  Sum_probs=50.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC------CC-e-----------------EEEccC----
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH------PC-M-----------------WILHDW----  241 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------~g-v-----------------~vLh~~----  241 (333)
                      +..+|||||||+|.++...+++. ..+++++|...+++.|++.      .+ |                 -|+..|    
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~  161 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG  161 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred             CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence            45789999999999887666544 3589999986566666531      11 1                 222211    


Q ss_pred             --ChhHHHHHHHHHHHhCCCCcEEEE
Q 035738          242 --NDEHCLKLLKNCYKSIPEDGKVIA  265 (333)
Q Consensus       242 --~~~~~~~lL~~~~~~L~pgG~l~i  265 (333)
                        .+.....++....+.|+|||+++-
T Consensus       162 l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          162 LLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             ccccchhhhHHHHHHhhCCCCceECC
Confidence              223455788888899999998763

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=97.63  E-value=5.1e-05  Score=70.34  Aligned_cols=79  Identities=9%  Similarity=-0.013  Sum_probs=56.4

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------C-Ce----------------------EE
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------P-CM----------------------WI  237 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~-gv----------------------~v  237 (333)
                      .+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++       . ++                      .|
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I  297 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence            356799999999999999999864 458999999 7887766532       1 22                      23


Q ss_pred             EccCCh------------hHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          238 LHDWND------------EHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       238 Lh~~~~------------~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      +.+.|.            ....+++.++.+.|+|||.+++...
T Consensus       298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  340 (396)
T 3c0k_A          298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC  340 (396)
T ss_dssp             EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            333221            3445788888888888888777654

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.62  E-value=5.7e-05  Score=69.24  Aligned_cols=72  Identities=13%  Similarity=0.064  Sum_probs=41.7

Q ss_pred             HHHHHHhCCCCcEEEEEeeecCCCC-CCccc-cccccchhhHHHhh-------CCC--CCcCCHHHHHHHHHhCC-CCee
Q 035738          250 LKNCYKSIPEDGKVIAVELMLPEVP-NTSIE-SKSNSDSDVLMMIQ-------SPG--GKERTRHEFMTLATGAG-FSGI  317 (333)
Q Consensus       250 L~~~~~~L~pgG~l~i~e~~~~~~~-~~~~~-~~~~~~~d~~m~~~-------~~~--g~~rt~~e~~~ll~~aG-f~~~  317 (333)
                      |+..++.|+|||++++.-...++.. .+... .....+.++.....       ..+  -..++.+|++++++++| |++.
T Consensus       208 L~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~  287 (384)
T 2efj_A          208 LRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEIL  287 (384)
T ss_dssp             HHHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEE
T ss_pred             HHHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEE
Confidence            8888999999999999888665530 11000 00111222111100       001  12468999999999985 7777


Q ss_pred             EEee
Q 035738          318 SCER  321 (333)
Q Consensus       318 ~~~~  321 (333)
                      ++..
T Consensus       288 ~le~  291 (384)
T 2efj_A          288 YLET  291 (384)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6643

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.61  E-value=3e-05  Score=68.42  Aligned_cols=82  Identities=18%  Similarity=0.299  Sum_probs=64.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----------CCe-------------------E
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----------PCM-------------------W  236 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~gv-------------------~  236 (333)
                      -+++.+||-||+|.|..+.++++..+..+++++|+ |.|++.++++           |.+                   -
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv  160 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV  160 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence            34678999999999999999999878789999999 8899887653           222                   5


Q ss_pred             EEccCChhH-------HHHHHHHHHHhCCCCcEEEEEeee
Q 035738          237 ILHDWNDEH-------CLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       237 vLh~~~~~~-------~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                      |+.+.+|+.       ....++.++++|+|||.++..-..
T Consensus       161 Ii~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~s  200 (294)
T 3o4f_A          161 IISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGV  200 (294)
T ss_dssp             EEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCC
Confidence            555555432       136899999999999999887543

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=97.60  E-value=5.6e-05  Score=67.28  Aligned_cols=54  Identities=22%  Similarity=0.284  Sum_probs=45.0

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ...+++.+. ..+..+|||+|||+|.++..+++++|+.+++++|. +.+++.|+++
T Consensus        15 l~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~   69 (301)
T 1m6y_A           15 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEK   69 (301)
T ss_dssp             HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence            344555555 66778999999999999999999999899999999 8899887653

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=97.59  E-value=4e-05  Score=68.26  Aligned_cols=49  Identities=20%  Similarity=0.306  Sum_probs=38.8

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP  230 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~  230 (333)
                      ..+++.+. .....+|||||||+|.++..++++  ..+++++|+ +.+++.++
T Consensus        32 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~   81 (299)
T 2h1r_A           32 DKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVK   81 (299)
T ss_dssp             HHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHH
T ss_pred             HHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHH
Confidence            34555555 667789999999999999999887  358999999 77776654

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=97.57  E-value=0.00011  Score=69.59  Aligned_cols=81  Identities=15%  Similarity=0.273  Sum_probs=59.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------CCe-------------------EEEcc--
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------PCM-------------------WILHD--  240 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~gv-------------------~vLh~--  240 (333)
                      ...+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++      .++                   .||.+  
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P  196 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP  196 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence            678999999999999999999875 578999999 7777665432      111                   33332  


Q ss_pred             ----------------CChhH-------HHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          241 ----------------WNDEH-------CLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       241 ----------------~~~~~-------~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                                      |++++       ..++|+++.+.|+|||+|++.....
T Consensus       197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence                            22222       2478999999999999998876543

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=97.54  E-value=7.1e-05  Score=64.79  Aligned_cols=52  Identities=23%  Similarity=0.403  Sum_probs=42.1

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ..+++.++ .....+|||||||+|.++..++++ +..+++++|+ +.+++.+++.
T Consensus        21 ~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~   73 (249)
T 3ftd_A           21 KKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI   73 (249)
T ss_dssp             HHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS
T ss_pred             HHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc
Confidence            45556555 667789999999999999999987 4578999999 7888877654

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=97.54  E-value=4.5e-05  Score=69.09  Aligned_cols=77  Identities=18%  Similarity=0.224  Sum_probs=58.6

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe---------------EEEccCChhH
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM---------------WILHDWNDEH  245 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv---------------~vLh~~~~~~  245 (333)
                      ....+|||+|||+|.++.. ++  ...+++++|+ +.+++.++++       .++               .|+.+.+ ..
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP-~~  269 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLP-KF  269 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCT-TT
T ss_pred             CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCc-Hh
Confidence            4678999999999999999 76  5678999999 8888877643       122               2333322 23


Q ss_pred             HHHHHHHHHHhCCCCcEEEEEeee
Q 035738          246 CLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       246 ~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                      ..++++.+.+.|+|||.+++.+..
T Consensus       270 ~~~~l~~~~~~L~~gG~l~~~~~~  293 (336)
T 2yx1_A          270 AHKFIDKALDIVEEGGVIHYYTIG  293 (336)
T ss_dssp             GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCCEEEEEEee
Confidence            348999999999999999998874

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=97.49  E-value=0.00011  Score=67.87  Aligned_cols=42  Identities=10%  Similarity=-0.099  Sum_probs=34.7

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      .+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~  253 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLA  253 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHH
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHH
Confidence            456799999999999999998853 247999999 888887654

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.47  E-value=0.00044  Score=62.83  Aligned_cols=73  Identities=10%  Similarity=-0.077  Sum_probs=42.0

Q ss_pred             HHHHHHHHhCCCCcEEEEEeeecCCCCCCcc-----cc-ccccchhhHHHhhCC-------C--CCcCCHHHHHHHHHhC
Q 035738          248 KLLKNCYKSIPEDGKVIAVELMLPEVPNTSI-----ES-KSNSDSDVLMMIQSP-------G--GKERTRHEFMTLATGA  312 (333)
Q Consensus       248 ~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~-----~~-~~~~~~d~~m~~~~~-------~--g~~rt~~e~~~ll~~a  312 (333)
                      .+|+..++.|+|||++++.-...++......     .+ ...++.++.......       +  -..++.+|+++++++.
T Consensus       190 ~FL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~  269 (359)
T 1m6e_X          190 LFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKE  269 (359)
T ss_dssp             HHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCceEEEEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHc
Confidence            4599999999999999998887665321000     00 001111111110000       1  1246899999999999


Q ss_pred             CC-CeeEEe
Q 035738          313 GF-SGISCE  320 (333)
Q Consensus       313 Gf-~~~~~~  320 (333)
                      |+ ++.++.
T Consensus       270 G~F~i~~~e  278 (359)
T 1m6e_X          270 GSFLIDHIE  278 (359)
T ss_dssp             TTBCCEEEE
T ss_pred             CCceEEEEE
Confidence            64 666543

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=97.47  E-value=6.5e-05  Score=66.16  Aligned_cols=51  Identities=14%  Similarity=0.287  Sum_probs=41.1

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCC--CeEEEeec-hhHhhhCCC
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPY--IKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~  231 (333)
                      .+++.+. .....+|||||||+|.++..++++.+.  .+++++|+ +.+++.+++
T Consensus        33 ~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~   86 (279)
T 3uzu_A           33 AIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQ   86 (279)
T ss_dssp             HHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHH
T ss_pred             HHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHH
Confidence            4555555 667789999999999999999998754  56999999 788887754

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=97.41  E-value=0.00025  Score=65.56  Aligned_cols=90  Identities=11%  Similarity=0.042  Sum_probs=62.1

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPY--------------------------------------IKGIN  219 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~--------------------------------------~~~~~  219 (333)
                      +..++.... +.+..+|||.+||+|.++.+++....+                                      .++++
T Consensus       190 Aa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  268 (393)
T 3k0b_A          190 AAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG  268 (393)
T ss_dssp             HHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred             HHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence            344555444 778889999999999999988765443                                      56999


Q ss_pred             eec-hhHhhhCCCC---CC----e-----------------EEEccCC-------hhHHHHHHHHHHHhCCC--CcEEEE
Q 035738          220 FDL-PHVIEHVPPH---PC----M-----------------WILHDWN-------DEHCLKLLKNCYKSIPE--DGKVIA  265 (333)
Q Consensus       220 ~D~-~~~~~~a~~~---~g----v-----------------~vLh~~~-------~~~~~~lL~~~~~~L~p--gG~l~i  265 (333)
                      +|+ +.+++.|+++   .|    +                 .|+.+.|       +++...+.+.+.+.|++  |++++|
T Consensus       269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i  348 (393)
T 3k0b_A          269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYV  348 (393)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEE
Confidence            999 8898887653   11    1                 4555533       13445566666666655  888888


Q ss_pred             Eee
Q 035738          266 VEL  268 (333)
Q Consensus       266 ~e~  268 (333)
                      +..
T Consensus       349 it~  351 (393)
T 3k0b_A          349 LTS  351 (393)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            765

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=97.39  E-value=0.00021  Score=65.86  Aligned_cols=90  Identities=13%  Similarity=0.115  Sum_probs=62.3

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPY--------------------------------------IKGIN  219 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~--------------------------------------~~~~~  219 (333)
                      +..++.... +.+..+|||.+||+|.++.+++....+                                      .++++
T Consensus       184 Aa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  262 (385)
T 3ldu_A          184 AAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG  262 (385)
T ss_dssp             HHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred             HHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence            344555444 778899999999999999988765322                                      57999


Q ss_pred             eec-hhHhhhCCCC---CC----e-----------------EEEccCC-------hhHHHHHHHHHHHhCCC--CcEEEE
Q 035738          220 FDL-PHVIEHVPPH---PC----M-----------------WILHDWN-------DEHCLKLLKNCYKSIPE--DGKVIA  265 (333)
Q Consensus       220 ~D~-~~~~~~a~~~---~g----v-----------------~vLh~~~-------~~~~~~lL~~~~~~L~p--gG~l~i  265 (333)
                      +|+ +.+++.|+++   .|    +                 .|+.+.|       .++..++.+++.+.|++  |+.++|
T Consensus       263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i  342 (385)
T 3ldu_A          263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYL  342 (385)
T ss_dssp             EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence            999 8899888753   11    1                 4444433       23445677777777765  788777


Q ss_pred             Eee
Q 035738          266 VEL  268 (333)
Q Consensus       266 ~e~  268 (333)
                      +..
T Consensus       343 it~  345 (385)
T 3ldu_A          343 ITS  345 (385)
T ss_dssp             EES
T ss_pred             EEC
Confidence            765

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=97.39  E-value=0.0011  Score=59.65  Aligned_cols=121  Identities=17%  Similarity=0.118  Sum_probs=85.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeechhHhhhCC--------------------------------CC----
Q 035738          190 NIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDLPHVIEHVP--------------------------------PH----  232 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~--------------------------------~~----  232 (333)
                      +...||-+|||.=.....+... .++++++=+|.|++++.-+                                .+    
T Consensus        90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~  169 (334)
T 3iei_A           90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG  169 (334)
T ss_dssp             TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred             CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence            4679999999999999888775 3678888889998865311                                10    


Q ss_pred             ---------------CCe-----------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccch
Q 035738          233 ---------------PCM-----------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDS  286 (333)
Q Consensus       233 ---------------~gv-----------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~  286 (333)
                                     .|+           .+|.+++++++.++|+.+.+..+ +|.+++.|.+.++++       +    
T Consensus       170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d~-------f----  237 (334)
T 3iei_A          170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGDR-------F----  237 (334)
T ss_dssp             CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTSH-------H----
T ss_pred             cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCCH-------H----
Confidence                           011           77889999999999999999875 467778899865431       1    


Q ss_pred             hhHHHhhC--CC------CCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738          287 DVLMMIQS--PG------GKERTRHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       287 d~~m~~~~--~~------g~~rt~~e~~~ll~~aGf~~~~~~~~  322 (333)
                      .-.|...+  .|      ....+.++..++|.++||+.+++...
T Consensus       238 g~~M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~  281 (334)
T 3iei_A          238 GQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM  281 (334)
T ss_dssp             HHHHHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred             HHHHHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence            11111110  01      12357788999999999998887665

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=97.37  E-value=0.00039  Score=63.99  Aligned_cols=90  Identities=12%  Similarity=0.033  Sum_probs=62.3

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPY--------------------------------------IKGIN  219 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~--------------------------------------~~~~~  219 (333)
                      +..++.... +.+..+++|.+||+|.++.+.+....+                                      .++++
T Consensus       183 Aaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G  261 (384)
T 3ldg_A          183 AAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG  261 (384)
T ss_dssp             HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred             HHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence            344555444 778899999999999999988765443                                      56999


Q ss_pred             eec-hhHhhhCCCC---CC----e-----------------EEEccCC-------hhHHHHHHHHHHHhCCC--CcEEEE
Q 035738          220 FDL-PHVIEHVPPH---PC----M-----------------WILHDWN-------DEHCLKLLKNCYKSIPE--DGKVIA  265 (333)
Q Consensus       220 ~D~-~~~~~~a~~~---~g----v-----------------~vLh~~~-------~~~~~~lL~~~~~~L~p--gG~l~i  265 (333)
                      +|+ +.+++.|+++   .|    +                 .|+.+.|       +++...+.+.+.+.|++  |++++|
T Consensus       262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i  341 (384)
T 3ldg_A          262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFI  341 (384)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence            999 8899888753   12    1                 3444432       24455677767777765  777777


Q ss_pred             Eee
Q 035738          266 VEL  268 (333)
Q Consensus       266 ~e~  268 (333)
                      +..
T Consensus       342 it~  344 (384)
T 3ldg_A          342 LTN  344 (384)
T ss_dssp             EES
T ss_pred             EEC
Confidence            765

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.34  E-value=0.00016  Score=62.68  Aligned_cols=52  Identities=12%  Similarity=0.204  Sum_probs=39.7

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ...+++.+. .....+|||||||+|.++. + .+.+..+++++|+ +.+++.+++.
T Consensus        10 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l-~~~~~~~v~avEid~~~~~~a~~~   62 (252)
T 1qyr_A           10 IDSIVSAIN-PQKGQAMVEIGPGLAALTE-P-VGERLDQLTVIELDRDLAARLQTH   62 (252)
T ss_dssp             HHHHHHHHC-CCTTCCEEEECCTTTTTHH-H-HHTTCSCEEEECCCHHHHHHHHTC
T ss_pred             HHHHHHhcC-CCCcCEEEEECCCCcHHHH-h-hhCCCCeEEEEECCHHHHHHHHHH
Confidence            345555555 6677899999999999999 5 4555445999999 8898887764

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=97.34  E-value=9.5e-05  Score=63.75  Aligned_cols=51  Identities=12%  Similarity=0.285  Sum_probs=42.0

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ..+++.++ .....+|||||||+|.++..+++..  .+++++|+ +.+++.++++
T Consensus        19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~   70 (245)
T 1yub_A           19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEK   70 (245)
T ss_dssp             HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCT
T ss_pred             HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHH
Confidence            45555555 6677899999999999999999986  78999999 7888887764

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=97.33  E-value=0.00019  Score=62.90  Aligned_cols=49  Identities=14%  Similarity=0.137  Sum_probs=39.0

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ..+++.+. .... +|||||||+|.++..++++.  .+++++|+ +.+++.+++
T Consensus        37 ~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~   86 (271)
T 3fut_A           37 RRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEE   86 (271)
T ss_dssp             HHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHH
T ss_pred             HHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHH
Confidence            34555555 5566 99999999999999999986  57999999 788876643

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.32  E-value=0.00071  Score=58.62  Aligned_cols=90  Identities=13%  Similarity=0.045  Sum_probs=55.7

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeech-hHhhhCCC-------------------CCC--e-
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLP-HVIEHVPP-------------------HPC--M-  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------------------~~g--v-  235 (333)
                      .++.+... +....+|||+|||+|.++..+++..+...++++|+. +.......                   .++  + 
T Consensus        64 ~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~D  142 (277)
T 3evf_A           64 RWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCD  142 (277)
T ss_dssp             HHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCS
T ss_pred             HHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCcc
Confidence            34555533 667789999999999999998887655445444441 11000000                   011  1 


Q ss_pred             EEEccCChh---------HHHHHHHHHHHhCCCC-cEEEEEeeec
Q 035738          236 WILHDWNDE---------HCLKLLKNCYKSIPED-GKVIAVELML  270 (333)
Q Consensus       236 ~vLh~~~~~---------~~~~lL~~~~~~L~pg-G~l~i~e~~~  270 (333)
                      .|+++..+.         ....+|+.+.+.|+|| |.+++ ..+.
T Consensus       143 lVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~-KVf~  186 (277)
T 3evf_A          143 TLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV-KVLA  186 (277)
T ss_dssp             EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE-EESC
T ss_pred             EEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE-EecC
Confidence            666666322         1235789999999999 99888 4443

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.32  E-value=0.00012  Score=63.49  Aligned_cols=50  Identities=14%  Similarity=0.238  Sum_probs=40.5

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ..+++.+. .....+|||||||+|.++..++++.  .+++++|+ +.+++.+++
T Consensus        19 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~   69 (255)
T 3tqs_A           19 QKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQK   69 (255)
T ss_dssp             HHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHH
T ss_pred             HHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHH
Confidence            34555555 6677899999999999999999875  68999999 788877653

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.31  E-value=0.00026  Score=70.37  Aligned_cols=78  Identities=13%  Similarity=0.105  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C--Ce-------------------EEEccC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P--CM-------------------WILHDW  241 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--gv-------------------~vLh~~  241 (333)
                      ++.+|||+|||+|.++..++.... .+++++|+ +.+++.++++      .  .+                   .|+.+.
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP  617 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP  617 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence            457999999999999999887443 46999999 8888877643      1  12                   344433


Q ss_pred             C--------------hhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          242 N--------------DEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       242 ~--------------~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      |              .....++++++.+.|+|||.|++...
T Consensus       618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~  658 (703)
T 3v97_A          618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN  658 (703)
T ss_dssp             CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            2              12345789999999999999985544

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=97.29  E-value=0.00033  Score=65.68  Aligned_cols=50  Identities=16%  Similarity=0.214  Sum_probs=40.0

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      .+++.+. ..+..+|||+|||+|.++..+++.  ..+++++|+ +.+++.|+++
T Consensus       277 ~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n  327 (433)
T 1uwv_A          277 RALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQN  327 (433)
T ss_dssp             HHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHH
T ss_pred             HHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHH
Confidence            4444444 556779999999999999999987  578999999 8888887653

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=97.28  E-value=0.0003  Score=62.39  Aligned_cols=50  Identities=12%  Similarity=0.187  Sum_probs=40.4

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ..+++.+. .....+|||||||+|.++..++++  ..+++++|+ +.+++.+++
T Consensus        40 ~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~   90 (295)
T 3gru_A           40 NKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANK   90 (295)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHH
T ss_pred             HHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHH
Confidence            45556555 667789999999999999999998  468999999 778777653

>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A

Probab=97.25  E-value=0.00035  Score=49.10  Aligned_cols=66  Identities=21%  Similarity=0.388  Sum_probs=50.2

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY  105 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l  105 (333)
                      .+..|++.|.+.+|+.++|+.+||+++|+    +...+++.|..|...|++...   |..++.|.+.+....+
T Consensus        11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~---g~~~~~W~i~~~~~~~   76 (81)
T 1qbj_A           11 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKE---AGTPPLWKIAVSTQAW   76 (81)
T ss_dssp             HHHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---SSSSCEEEEC------
T ss_pred             HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec---CCCCCeeEEeCcHHhc
Confidence            45668888888765568999999999999    899999999999999999976   2245778777655433

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=97.17  E-value=0.00027  Score=66.56  Aligned_cols=89  Identities=15%  Similarity=0.094  Sum_probs=60.6

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-------------CCCeEEEeec-hhHhhhCCCC----------CC
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-------------PYIKGINFDL-PHVIEHVPPH----------PC  234 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~~----------~g  234 (333)
                      ..+++.+. .....+|+|.|||+|.++..+.+..             +..+++|+|+ |.+++.|+.+          ..
T Consensus       161 ~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~  239 (445)
T 2okc_A          161 QAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP  239 (445)
T ss_dssp             HHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred             HHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence            34444444 4556799999999999999888763             4567999999 7777655421          11


Q ss_pred             e---------------EEEccCC------h--------------hHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          235 M---------------WILHDWN------D--------------EHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       235 v---------------~vLh~~~------~--------------~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      +               .|+.+.|      .              ..-...++++.+.|+|||++.++-+
T Consensus       240 i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          240 IVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             EEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence            1               3332211      0              0124789999999999999998876

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.15  E-value=0.00037  Score=60.49  Aligned_cols=34  Identities=21%  Similarity=0.383  Sum_probs=27.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHH-------CCC-----CeEEEeec-h
Q 035738          190 NIKQLVDVGGGIGVTLQAITTK-------YPY-----IKGINFDL-P  223 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~-------~p~-----~~~~~~D~-~  223 (333)
                      +..+|||||+|+|..+..+++.       .|+     ++++.++. |
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p  106 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFP  106 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCc
Confidence            4579999999999999887664       674     68899987 5

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.11  E-value=0.00076  Score=58.52  Aligned_cols=91  Identities=18%  Similarity=0.054  Sum_probs=60.4

Q ss_pred             hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC--CC-----------C--------
Q 035738          177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP--HP-----------C--------  234 (333)
Q Consensus       177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~-----------g--------  234 (333)
                      -..++.+.+. +....+|||+|||.|.++..+++..+-..++++|+ ......+..  ..           +        
T Consensus        78 KL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~  156 (282)
T 3gcz_A           78 KLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIP  156 (282)
T ss_dssp             HHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCC
T ss_pred             HHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCC
Confidence            3445666664 77788999999999999999998777666777776 222111111  00           0        


Q ss_pred             e-EEEccCChh---------HHHHHHHHHHHhCCCC--cEEEEEee
Q 035738          235 M-WILHDWNDE---------HCLKLLKNCYKSIPED--GKVIAVEL  268 (333)
Q Consensus       235 v-~vLh~~~~~---------~~~~lL~~~~~~L~pg--G~l~i~e~  268 (333)
                      + -||++..+.         ....+|+-+.+.|+||  |.+++--+
T Consensus       157 ~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF  202 (282)
T 3gcz_A          157 GDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL  202 (282)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             cCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence            1 666765422         2235788889999999  98877443

>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A

Probab=97.09  E-value=0.00034  Score=47.33  Aligned_cols=55  Identities=15%  Similarity=0.298  Sum_probs=45.7

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccc
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN   99 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t   99 (333)
                      +..|++.|.+.+  .++|..|||+.+|+    +...+.+.+..|...|++...     ..+.|+++
T Consensus        12 ~~~IL~~L~~~~--~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~~-----~~G~y~lg   66 (67)
T 2heo_A           12 EQKILQVLSDDG--GPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSSP-----SPKYWSIG   66 (67)
T ss_dssp             HHHHHHHHHHHC--SCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEE-----ETTEEEEC
T ss_pred             HHHHHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEecC-----CCceEeeC
Confidence            556888888653  48999999999999    999999999999999999865     24667653

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=97.08  E-value=0.00027  Score=64.94  Aligned_cols=77  Identities=16%  Similarity=0.099  Sum_probs=57.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---C---------------C---e------------
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---P---------------C---M------------  235 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~---------------g---v------------  235 (333)
                      ...+|||+|||+|..+..++++.+..+++++|+ +..++.++++   -               +   +            
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            467899999999999999999988889999999 7877666532   1               2   2            


Q ss_pred             -------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738          236 -------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       236 -------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                             .|+-+-+ -....+|..+.+.|+|||.+++.-
T Consensus       127 ~~~~~fD~I~lDP~-~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          127 ERHRYFHFIDLDPF-GSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HSTTCEEEEEECCS-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccCCCCEEEeCCC-CCHHHHHHHHHHhcCCCCEEEEEe
Confidence                   2221111 112478999999999999877764

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=97.08  E-value=0.0005  Score=64.19  Aligned_cols=40  Identities=18%  Similarity=0.208  Sum_probs=34.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ...+|||+|||+|.++..+++.  ..+++++|+ +.+++.|++
T Consensus       290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~  330 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARR  330 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHH
Confidence            5679999999999999999886  358999999 888887764

>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19

Probab=96.96  E-value=0.00059  Score=47.50  Aligned_cols=62  Identities=23%  Similarity=0.377  Sum_probs=49.4

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS  100 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~  100 (333)
                      -.+..|++.|.+.+.+.++|+.|||+++|+    +...+.+.|+.|...|++...   |..++.|.+++
T Consensus        14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~---g~~~~~W~i~~   75 (77)
T 1qgp_A           14 DQEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKE---AGTPPLWKIAV   75 (77)
T ss_dssp             HHHHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEE---CSSSCEEEECC
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec---CCCCCceEecC
Confidence            345678888888743348999999999999    899999999999999999886   22356676654

>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}

Probab=96.95  E-value=0.00037  Score=52.14  Aligned_cols=63  Identities=19%  Similarity=0.271  Sum_probs=54.2

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHh--CCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccccC
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQL--TTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPN  108 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~--g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~~  108 (333)
                      +..|++.|.+.   |+.|+.+||+.+  |+    .+..+++-|+.|...|+|+..     ..+.|++|+.+..++..
T Consensus        15 d~~IL~~L~~~---g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~-----~rg~Y~LT~~G~~~l~~   79 (111)
T 3b73_A           15 DDRILEIIHEE---GNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL-----ANGVYVITEEGEAYLNG   79 (111)
T ss_dssp             HHHHHHHHHHH---SCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC-----STTCEEECHHHHHHHTT
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec-----CCceEEECchHHHHHHH
Confidence            46688889875   599999999999  99    999999999999999999986     23489999999866654

>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19

Probab=96.92  E-value=0.00068  Score=47.23  Aligned_cols=62  Identities=11%  Similarity=0.110  Sum_probs=50.7

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcc-cHHHHHHHHhcccceeeeccCCCccccccccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPM-MLDRILRLLASYSVVECSLDASGARRLYSLNSVSKY  104 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~-~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~  104 (333)
                      .+-.|++.|...   ||.|+.+||+.+|+    ... .+++.|..|...|+|.+. ..|  ...|.+|+.+..
T Consensus        12 ~~~~IL~~Lk~~---g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~-~~g--RP~w~LT~~g~~   74 (79)
T 1xmk_A           12 IKEKICDYLFNV---SDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQ-GTT--PPIWHLTDKKRE   74 (79)
T ss_dssp             HHHHHHHHHHHT---CCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEE-CSS--SCEEEECHHHHT
T ss_pred             HHHHHHHHHHHc---CCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEec-CCC--CCCeEeCHhHHh
Confidence            355678888887   59999999999999    888 999999999999999865 122  338898887753

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=96.91  E-value=0.001  Score=60.60  Aligned_cols=41  Identities=22%  Similarity=0.183  Sum_probs=35.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ++.+||-||+|.|..+.++++. |.-+++.+|+ |.|++.+++
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~  246 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKK  246 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHH
T ss_pred             CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHh
Confidence            4689999999999999999974 5578999999 889988765

>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5

Probab=96.89  E-value=0.00086  Score=48.70  Aligned_cols=61  Identities=18%  Similarity=0.221  Sum_probs=50.8

Q ss_pred             HHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccc
Q 035738           28 AMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSK  103 (333)
Q Consensus        28 ~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~  103 (333)
                      ++..-.++.|++.| .    ++.|..|||+.+|+    ++..+.+.|+.|...|++.+.     . +.|.+++.+.
T Consensus        27 ~l~~~~r~~Il~~L-~----~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~-----~-g~y~l~~~g~   87 (96)
T 1y0u_A           27 AVTNPVRRKILRML-D----KGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV-----G-ERWVVTDAGK   87 (96)
T ss_dssp             HHSCHHHHHHHHHH-H----TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----T-TEEEECTTTC
T ss_pred             HhCCHHHHHHHHHH-c----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE-----C-CEEEECCCch
Confidence            44445567788888 5    48999999999999    999999999999999999987     2 4788877654

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=96.70  E-value=0.0072  Score=52.79  Aligned_cols=89  Identities=16%  Similarity=0.103  Sum_probs=57.8

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeech-hHhhhCC-------------------CCCC--e-
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLP-HVIEHVP-------------------PHPC--M-  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~-------------------~~~g--v-  235 (333)
                      .++.+. .-+.+..+|||+||++|.++..+++..+-..++++|+. .......                   ...+  + 
T Consensus        71 ~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~D  149 (300)
T 3eld_A           71 RWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSD  149 (300)
T ss_dssp             HHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCS
T ss_pred             HHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcC
Confidence            344444 33567899999999999999999987665566777762 2111100                   0011  1 


Q ss_pred             EEEccCChh---------HHHHHHHHHHHhCCCC-cEEEEEee
Q 035738          236 WILHDWNDE---------HCLKLLKNCYKSIPED-GKVIAVEL  268 (333)
Q Consensus       236 ~vLh~~~~~---------~~~~lL~~~~~~L~pg-G~l~i~e~  268 (333)
                      .|+++..+.         ....+|+-+.+.|+|| |.+++--+
T Consensus       150 lVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF  192 (300)
T 3eld_A          150 TLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVL  192 (300)
T ss_dssp             EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEES
T ss_pred             EEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence            666665432         1246788899999999 99887543

>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73

Probab=96.63  E-value=0.0021  Score=45.07  Aligned_cols=45  Identities=22%  Similarity=0.244  Sum_probs=39.5

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..|++.|.+.   ++.|..|||+.+|+    ++..+++.|+.|...|++.+.
T Consensus         3 ~~Il~~L~~~---~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~~   47 (81)
T 2htj_A            3 NEILEFLNRH---NGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQRS   47 (81)
T ss_dssp             HHHHHHHHHS---CCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence            3467777765   48999999999999    999999999999999999965

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=96.53  E-value=0.0038  Score=62.05  Aligned_cols=54  Identities=17%  Similarity=0.056  Sum_probs=41.1

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH------------------------------------------CCCC
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTK------------------------------------------YPYI  215 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~------------------------------------------~p~~  215 (333)
                      +..++.... +....+|+|.+||+|.++.+.+..                                          .++.
T Consensus       179 Aa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~  257 (703)
T 3v97_A          179 AAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS  257 (703)
T ss_dssp             HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence            344555444 777889999999999999987754                                          2346


Q ss_pred             eEEEeec-hhHhhhCCCC
Q 035738          216 KGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       216 ~~~~~D~-~~~~~~a~~~  232 (333)
                      +++++|+ +.+++.|+.+
T Consensus       258 ~i~G~Did~~av~~A~~N  275 (703)
T 3v97_A          258 HFYGSDSDARVIQRARTN  275 (703)
T ss_dssp             CEEEEESCHHHHHHHHHH
T ss_pred             cEEEEECCHHHHHHHHHH
Confidence            8999999 8899887753

>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A

Probab=96.52  E-value=0.0031  Score=46.18  Aligned_cols=63  Identities=16%  Similarity=0.230  Sum_probs=48.1

Q ss_pred             HHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738           28 AMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS  100 (333)
Q Consensus        28 ~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~  100 (333)
                      ++.--.++.|+..|.+    |+.|+.|||+.+|+    ++..+.+.|+.|...|++.... .| ....|++|+
T Consensus        19 ~l~~~~r~~Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~-~g-~~~~y~l~~   81 (102)
T 3pqk_A           19 TLSHPVRLMLVCTLVE----GEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETRR-NI-KQIFYRLTE   81 (102)
T ss_dssp             HHCSHHHHHHHHHHHT----CCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEEC-SS-SCCEEEECS
T ss_pred             HcCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE-eC-CEEEEEECc
Confidence            3444456677788866    48999999999999    9999999999999999999863 12 133455553

>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}

Probab=96.44  E-value=0.002  Score=56.53  Aligned_cols=58  Identities=14%  Similarity=0.244  Sum_probs=47.3

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS  102 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~  102 (333)
                      -+.|++.|...+  ++.|+.|||+++|+    +..-+.|+|+.|...|||.++     .++.|++++..
T Consensus        32 al~IL~~l~~~~--~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~-----~~~~Y~LG~~~   89 (275)
T 3mq0_A           32 AVRILDLVAGSP--RDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARS-----ADGTLRIGPHS   89 (275)
T ss_dssp             HHHHHHHHHHCS--SCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEEC-----TTSEEEECTHH
T ss_pred             HHHHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC-----CCCcEEehHHH
Confidence            355888888754  47999999999999    999999999999999999987     24679988654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=96.34  E-value=0.0028  Score=60.98  Aligned_cols=89  Identities=12%  Similarity=0.087  Sum_probs=58.9

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCC------------------CCeEEEeec-hhHhhhCCCC-------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYP------------------YIKGINFDL-PHVIEHVPPH-------  232 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~~-------  232 (333)
                      ..+++.+. .....+|+|.+||+|.++..+.+...                  ..+++|+|+ +.+++.|+.+       
T Consensus       159 ~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~  237 (541)
T 2ar0_A          159 KTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE  237 (541)
T ss_dssp             HHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence            33444444 45567999999999999998876531                  247899999 7777655421       


Q ss_pred             ------CCe-----------------EEEccCC-----------------hhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          233 ------PCM-----------------WILHDWN-----------------DEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       233 ------~gv-----------------~vLh~~~-----------------~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                            .++                 .|+-+.|                 ...-...++++.+.|+|||++.++-+
T Consensus       238 ~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p  313 (541)
T 2ar0_A          238 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP  313 (541)
T ss_dssp             CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence                  111                 3333221                 11123689999999999999988865

>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A

Probab=96.32  E-value=0.0093  Score=46.20  Aligned_cols=78  Identities=15%  Similarity=0.181  Sum_probs=54.9

Q ss_pred             CCcCchhhhHHHHHHHHHHhhhhHHHHHH-----HHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHH
Q 035738            2 DSIVDGERDQSFAYANQLARGIVLPMAMQ-----AVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRL   76 (333)
Q Consensus         2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~-----~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~   76 (333)
                      +.-++.+-...+..+.+.....+....-.     ...+..++..|...   ++.|..+||+.+++    ++..+.+.++.
T Consensus         2 ~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~   74 (142)
T 3ech_A            2 NYPVNPDLMPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQ---RGLNLQDLGRQMCR----DKALITRKIRE   74 (142)
T ss_dssp             CCCCCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT---TTCCHHHHHHHHC-------CHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC---CCcCHHHHHHHhCC----CHHHHHHHHHH
Confidence            33344455555666666655554443333     35677788888876   48999999999999    99999999999


Q ss_pred             Hhcccceeee
Q 035738           77 LASYSVVECS   86 (333)
Q Consensus        77 L~~~g~l~~~   86 (333)
                      |...|++.+.
T Consensus        75 L~~~Glv~r~   84 (142)
T 3ech_A           75 LEGRNLVRRE   84 (142)
T ss_dssp             HHHTTSEEC-
T ss_pred             HHHCCCEeec
Confidence            9999999986

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=96.31  E-value=0.0017  Score=56.29  Aligned_cols=43  Identities=14%  Similarity=0.169  Sum_probs=35.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-h-------hHhhhCCCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-P-------HVIEHVPPH  232 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~~  232 (333)
                      .....+|||+|||+|..+..+++.  ..+++++|+ |       .+++.++++
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n  131 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLN  131 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHS
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhH
Confidence            345578999999999999999986  468999999 8       777777654

>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}

Probab=96.24  E-value=0.0034  Score=43.50  Aligned_cols=45  Identities=24%  Similarity=0.262  Sum_probs=38.5

Q ss_pred             hhhHhhhc-----CCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           37 IFEIIDKA-----GPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        37 lfd~L~~~-----~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      |++.|.+.     |  +|.|+.|||+++|+    .+..+++-|..|...|++.+.+
T Consensus         9 IL~~I~~~i~~~~g--~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~~   58 (77)
T 2jt1_A            9 IISIVQERQNMDDG--APVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKVN   58 (77)
T ss_dssp             HHHHHHHHHHHHTT--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEES
T ss_pred             HHHHHHHHHhhccC--CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEecC
Confidence            45555543     3  59999999999999    8999999999999999999973

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=96.24  E-value=0.004  Score=54.26  Aligned_cols=59  Identities=15%  Similarity=0.133  Sum_probs=46.4

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--CCeEEEc
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--PCMWILH  239 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~gv~vLh  239 (333)
                      ...+++.+. ..+...+||.+||.|.++..++++  +.+++++|. |.+++.+++.  ..+.+.|
T Consensus        11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~   72 (285)
T 1wg8_A           11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQ   72 (285)
T ss_dssp             HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEE
T ss_pred             HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEE
Confidence            456777676 777889999999999999999998  779999999 8888766542  2454444

>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}

Probab=96.23  E-value=0.0026  Score=46.19  Aligned_cols=51  Identities=24%  Similarity=0.303  Sum_probs=44.5

Q ss_pred             HHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           28 AMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        28 ~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ++.--.++.|+..|.+    |+.|+.|||+.+|+    ++..+.+.|+.|...|++.+.
T Consensus        19 ~l~~~~r~~Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~   69 (98)
T 3jth_A           19 AMANERRLQILCMLHN----QELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTR   69 (98)
T ss_dssp             HHCSHHHHHHHHHTTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HcCCHHHHHHHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence            4444567778888887    48999999999999    999999999999999999986

>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}

Probab=96.03  E-value=0.0044  Score=44.84  Aligned_cols=51  Identities=12%  Similarity=0.124  Sum_probs=43.8

Q ss_pred             HHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           29 MQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        29 l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +..-.++.|+..|...   ++.|..|||+.+|+    ++..+.+.|+.|...|++.+.
T Consensus        21 l~~~~~~~il~~l~~~---~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~   71 (99)
T 3cuo_A           21 MSHPKRLLILCMLSGS---PGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQ   71 (99)
T ss_dssp             HCSHHHHHHHHHHTTC---CSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             hCChHHHHHHHHHHhC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            3344567788888764   48999999999999    999999999999999999986

>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62

Probab=95.99  E-value=0.0067  Score=42.11  Aligned_cols=43  Identities=19%  Similarity=0.307  Sum_probs=39.7

Q ss_pred             hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      |.+.|.+.   |.++++|||+.+++    ++.-++|-|+.|...|++.+.
T Consensus         7 Il~~L~~~---g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~   49 (78)
T 1xn7_A            7 VRDLLALR---GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI   49 (78)
T ss_dssp             HHHHHHHS---CSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence            56778876   59999999999999    999999999999999999987

>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}

Probab=95.98  E-value=0.01  Score=45.49  Aligned_cols=46  Identities=22%  Similarity=0.190  Sum_probs=37.6

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS  100 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~  100 (333)
                      ++.|.++||+.+|+    ++..++++|+.|...|++....  | ..+.|.++.
T Consensus        25 ~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~~--g-~~ggy~L~~   70 (129)
T 2y75_A           25 GPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSIR--G-AYGGYVLGS   70 (129)
T ss_dssp             CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC-------CCEEESS
T ss_pred             CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEecC--C-CCCceEeCC
Confidence            58999999999999    9999999999999999998752  1 235677654

>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19

Probab=95.97  E-value=0.0042  Score=43.38  Aligned_cols=60  Identities=13%  Similarity=0.087  Sum_probs=47.3

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSK  103 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~  103 (333)
                      ....|.+.|.+.    +.|+.|||+++|+    ....+++.|..|...|++....   ..+..|+++..+.
T Consensus        18 ~~~~IL~lL~~~----g~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~---~~PP~W~~~~~~~   77 (82)
T 1oyi_A           18 IVCEAIKTIGIE----GATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSD---DIPPRWFMTTEAD   77 (82)
T ss_dssp             HHHHHHHHHSSS----TEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECS---SSSCEEESCC---
T ss_pred             HHHHHHHHHHHc----CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC---CCCCcceeccCcc
Confidence            455677888864    4999999999999    9999999999999999999862   2467788776543

>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A

Probab=95.94  E-value=0.0056  Score=46.53  Aligned_cols=53  Identities=23%  Similarity=0.139  Sum_probs=45.5

Q ss_pred             HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .++.--.++.|+..|...   ++.|+.|||+.+|+    ++..+.+.|+.|...|++...
T Consensus        37 ~al~~~~rl~IL~~L~~~---~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~   89 (122)
T 1u2w_A           37 KAIADENRAKITYALCQD---EELCVCDIANILGV----TIANASHHLRTLYKQGVVNFR   89 (122)
T ss_dssp             HHHHSHHHHHHHHHHHHS---SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred             HHhCCHHHHHHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence            344445677899999854   58999999999999    999999999999999999975

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=95.93  E-value=0.0062  Score=56.02  Aligned_cols=79  Identities=16%  Similarity=0.214  Sum_probs=56.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC------CC--eEE--------Ec-cCC--------
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH------PC--MWI--------LH-DWN--------  242 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~g--v~v--------Lh-~~~--------  242 (333)
                      +..+|||++||+|.++..++.+.++ .+++.+|+ +..++.++++      .+  +.+        +. .+.        
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            4679999999999999999998765 57899999 8888777653      22  311        11 110        


Q ss_pred             hh--HHHHHHHHHHHhCCCCcEEEEEee
Q 035738          243 DE--HCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       243 ~~--~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      |+  ....++..+.+.|+|||.|++.-.
T Consensus       132 DP~g~~~~~l~~a~~~Lk~gGll~~t~t  159 (392)
T 3axs_A          132 DPFGTPVPFIESVALSMKRGGILSLTAT  159 (392)
T ss_dssp             CCSSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCCcCHHHHHHHHHHHhCCCCEEEEEec
Confidence            11  013688999999999997777664

>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}

Probab=95.92  E-value=0.0033  Score=47.46  Aligned_cols=64  Identities=9%  Similarity=0.141  Sum_probs=50.6

Q ss_pred             HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738           27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS  100 (333)
Q Consensus        27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~  100 (333)
                      .+|.--.++.|+..|.+    |+.|+.|||+.+|+    ++..+.+.|+.|...|+|..... | ....|++++
T Consensus        13 ~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~~~-g-r~~~y~l~~   76 (118)
T 3f6o_A           13 QALADPTRRAVLGRLSR----GPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTHKQ-G-RVRTCAIEK   76 (118)
T ss_dssp             HHHTSHHHHHHHHHHHT----CCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEEEE-T-TEEEEEECS
T ss_pred             HHhCCHHHHHHHHHHHh----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEEec-C-CEEEEEECH
Confidence            35555677888888886    58999999999999    99999999999999999987631 1 133466654

>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69

Probab=95.89  E-value=0.0067  Score=44.87  Aligned_cols=76  Identities=14%  Similarity=0.176  Sum_probs=52.5

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeeeccC-C
Q 035738           13 FAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECSLDA-S   90 (333)
Q Consensus        13 ~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~   90 (333)
                      ...+.+++.+.|...+|         ..|..    |+.+..||++.+ |+    ++..+.+.|+.|...|+|++.... +
T Consensus         4 ~~~~l~~l~~~~~~~IL---------~~L~~----~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~~~d   66 (107)
T 2hzt_A            4 VEATLEVIGGKWKXVIL---------XHLTH----GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQV   66 (107)
T ss_dssp             HHHHHHHHCSTTHHHHH---------HHHTT----CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSS
T ss_pred             HHHHHHHHcCccHHHHH---------HHHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecCCC
Confidence            34455555555554443         34443    489999999999 99    999999999999999999987421 1


Q ss_pred             Ccccccccccccccc
Q 035738           91 GARRLYSLNSVSKYY  105 (333)
Q Consensus        91 ~~~~~y~~t~~~~~l  105 (333)
                      +..-.|.+|+.+..+
T Consensus        67 ~r~~~y~LT~~G~~l   81 (107)
T 2hzt_A           67 PPKVEYELSEYGRSL   81 (107)
T ss_dssp             SCEEEEEECTTGGGG
T ss_pred             CCeEEEEECccHHHH
Confidence            112347777766443

>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A

Probab=95.89  E-value=0.0042  Score=53.23  Aligned_cols=59  Identities=19%  Similarity=0.149  Sum_probs=48.1

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccc
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSK  103 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~  103 (333)
                      +.|++.|.+.+  ++.|+.|||+++|+    +..-+.|+|+.|...|++.+++    ++++|++++..-
T Consensus         9 l~iL~~l~~~~--~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~----~~~~Y~lg~~~~   67 (241)
T 2xrn_A            9 ASIMRALGSHP--HGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEALG----PAGGFRLGPALG   67 (241)
T ss_dssp             HHHHHHHHTCT--TCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEECG----GGCEEEECSHHH
T ss_pred             HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC----CCCeEEECHHHH
Confidence            45677777643  47999999999999    9999999999999999999862    247898876543

>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}

Probab=95.88  E-value=0.0046  Score=46.10  Aligned_cols=61  Identities=20%  Similarity=0.198  Sum_probs=46.3

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS  102 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~  102 (333)
                      -.++.|+..|..    ++.|..|||+.+|+    ++..+.+.|+.|...|++.+... | ....|.+|+.+
T Consensus        21 ~~r~~IL~~L~~----~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~~-g-r~~~y~l~~~~   81 (114)
T 2oqg_A           21 ETRWEILTELGR----ADQSASSLATRLPV----SRQAIAKHLNALQACGLVESVKV-G-REIRYRALGAE   81 (114)
T ss_dssp             HHHHHHHHHHHH----SCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEE-T-TEEEEEECSHH
T ss_pred             hHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEec-C-CEEEEEechHH
Confidence            345667778844    48999999999999    99999999999999999997621 1 12236665543

>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}

Probab=95.87  E-value=0.0064  Score=43.07  Aligned_cols=43  Identities=16%  Similarity=0.321  Sum_probs=39.7

Q ss_pred             hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      |.+.|.+.   |.++++|||+.+++    ++.-++|.|+.|...|++.+.
T Consensus         7 Il~~L~~~---g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~   49 (87)
T 2k02_A            7 VRDMLALQ---GRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI   49 (87)
T ss_dssp             HHHHHHHS---CSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred             HHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            66778876   59999999999999    999999999999999999987

>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}

Probab=95.86  E-value=0.0026  Score=55.22  Aligned_cols=58  Identities=17%  Similarity=0.209  Sum_probs=47.9

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS  102 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~  102 (333)
                      +.|++.|.+.+  ++.|+.|||+++|+    +..-+.|+|+.|...|++.+++    +.++|++++..
T Consensus         9 l~IL~~l~~~~--~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~~----~~~~Y~lG~~~   66 (260)
T 3r4k_A            9 LTLLTYFNHGR--LEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQVE----GARSYRLGPQV   66 (260)
T ss_dssp             HHHHTTCBTTB--SEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEECS----SSSEEEECTTH
T ss_pred             HHHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC----CCCcEEcCHHH
Confidence            44677777532  58999999999999    9999999999999999999872    34789987654

>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A

Probab=95.81  E-value=0.0055  Score=44.37  Aligned_cols=48  Identities=10%  Similarity=0.185  Sum_probs=44.0

Q ss_pred             CCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccccccc
Q 035738           50 LSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVP  107 (333)
Q Consensus        50 ~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~  107 (333)
                      .+..+||..+|+    +++.++..++.|...|++.+.      .+.|.+|+.+..++.
T Consensus        21 ~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~~------~~~~~LT~kG~~~l~   68 (95)
T 1r7j_A           21 SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE------GKQYMLTKKGEELLE   68 (95)
T ss_dssp             BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------TTEEEECHHHHHHHH
T ss_pred             CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE------CCeeEEChhHHHHHH
Confidence            899999999999    999999999999999999997      567999999987664

>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2

Probab=95.76  E-value=0.0069  Score=52.14  Aligned_cols=57  Identities=18%  Similarity=0.174  Sum_probs=47.5

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS  102 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~  102 (333)
                      +.|++.|.+.+  ++.|+.|||+++|+    +..-+.|+|+.|...|++.++     .++.|++++..
T Consensus        11 l~iL~~l~~~~--~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~-----~~~~Y~lg~~~   67 (249)
T 1mkm_A           11 FEILDFIVKNP--GDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK-----KDKRYVPGYKL   67 (249)
T ss_dssp             HHHHHHHHHCS--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC-----TTSCEEECTHH
T ss_pred             HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEC-----CCCcEEECHHH
Confidence            45677777643  47999999999999    999999999999999999986     25788887654

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=95.76  E-value=0.015  Score=56.89  Aligned_cols=66  Identities=12%  Similarity=0.039  Sum_probs=41.7

Q ss_pred             hhhhcCCchhHHHHHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH----C---------CCCeEEE
Q 035738          153 FEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTK----Y---------PYIKGIN  219 (333)
Q Consensus       153 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~----~---------p~~~~~~  219 (333)
                      |+.+++++-+...|.+|+...       +.+....-.+...|+|||||+|-++...+++    .         ...++++
T Consensus       379 Ye~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyA  451 (745)
T 3ua3_A          379 YNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYI  451 (745)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred             HHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEE
Confidence            666777887777887777542       2222221124568999999999996543222    2         3458899


Q ss_pred             eec-hhH
Q 035738          220 FDL-PHV  225 (333)
Q Consensus       220 ~D~-~~~  225 (333)
                      +|- |.+
T Consensus       452 VEknp~A  458 (745)
T 3ua3_A          452 VEKNPNA  458 (745)
T ss_dssp             EECCHHH
T ss_pred             EeCChHH
Confidence            988 543

>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28

Probab=95.74  E-value=0.0051  Score=44.55  Aligned_cols=53  Identities=25%  Similarity=0.260  Sum_probs=45.8

Q ss_pred             HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .++..-.++.|+..|...   ++.|..+||+.+|+    ++..+.+.|+.|...|++.+.
T Consensus        11 ~~l~~~~~~~iL~~L~~~---~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~   63 (100)
T 1ub9_A           11 HILGNPVRLGIMIFLLPR---RKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTY   63 (100)
T ss_dssp             HHHHSHHHHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             cccCChHHHHHHHHHHhc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            455566778888888754   48999999999999    999999999999999999965

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=95.69  E-value=0.0046  Score=60.27  Aligned_cols=104  Identities=17%  Similarity=0.194  Sum_probs=61.9

Q ss_pred             hhhhcCCchhHHHHHHHHhhhhhhhHHHHHhhcc---CCCCCCeEEEEcCCccHHHHHHHHH----CCCCeEEEeechhH
Q 035738          153 FEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYK---GFDNIKQLVDVGGGIGVTLQAITTK----YPYIKGINFDLPHV  225 (333)
Q Consensus       153 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~---~~~~~~~vlDVGgG~G~~~~~l~~~----~p~~~~~~~D~~~~  225 (333)
                      |+.+++++-....|.+|+..       .+.+..+   ...+...|+|||||+|-+....+++    ...++++.++-..+
T Consensus       324 YevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~  396 (637)
T 4gqb_A          324 YEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN  396 (637)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH
T ss_pred             hhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence            67778888888888887643       2222221   1234568999999999885443332    33457888988445


Q ss_pred             hhhCCCC------CC-----------------e-EEEccC-----ChhHHHHHHHHHHHhCCCCcEE
Q 035738          226 IEHVPPH------PC-----------------M-WILHDW-----NDEHCLKLLKNCYKSIPEDGKV  263 (333)
Q Consensus       226 ~~~a~~~------~g-----------------v-~vLh~~-----~~~~~~~lL~~~~~~L~pgG~l  263 (333)
                      ...+++.      .+                 | -+...|     ..+-...+|-...+.|||||.+
T Consensus       397 A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGim  463 (637)
T 4gqb_A          397 AVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVS  463 (637)
T ss_dssp             HHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEE
T ss_pred             HHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEE
Confidence            5444431      00                 1 111211     1223346777778899999875

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=95.68  E-value=0.0099  Score=54.92  Aligned_cols=41  Identities=22%  Similarity=0.387  Sum_probs=35.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      .+.+|||+|||+|..+..+++..  .+++++|+ +.+++.++++
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g--~~V~~VD~s~~~l~~Ar~N  134 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKA--SQGIYIERNDETAVAARHN  134 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTC--SEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHh
Confidence            46899999999999999888764  58999999 8888888754

>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A

Probab=95.63  E-value=0.0092  Score=45.93  Aligned_cols=79  Identities=15%  Similarity=0.147  Sum_probs=59.1

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeeecc-C
Q 035738           12 SFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECSLD-A   89 (333)
Q Consensus        12 ~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~~~-~   89 (333)
                      +.....+++.+-|...+|..         |..    |+.+..||++.+ |+    ++..+.+.|+.|...|+|++... +
T Consensus        15 pi~~~l~~lg~kW~l~IL~~---------L~~----g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~~~   77 (131)
T 4a5n_A           15 PVEFTLDVIGGKWKGILFYH---------MID----GKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVYHQ   77 (131)
T ss_dssp             HHHHHHHHHCSSSHHHHHHH---------HTT----SCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECS
T ss_pred             cHHHHHHHHcCcCHHHHHHH---------Hhc----CCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEecCC
Confidence            45666777777776655543         333    589999999999 99    99999999999999999998742 1


Q ss_pred             CCcccccccccccccccc
Q 035738           90 SGARRLYSLNSVSKYYVP  107 (333)
Q Consensus        90 ~~~~~~y~~t~~~~~l~~  107 (333)
                      .+....|++|+.+..+..
T Consensus        78 d~r~v~y~LT~~G~~l~~   95 (131)
T 4a5n_A           78 VPPKVEYSLTEFGRTLEP   95 (131)
T ss_dssp             SSCEEEEEECTTGGGGHH
T ss_pred             CCCeEEEEECHhHHHHHH
Confidence            112345888888876653

>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A

Probab=95.60  E-value=0.0075  Score=44.51  Aligned_cols=48  Identities=23%  Similarity=0.334  Sum_probs=41.6

Q ss_pred             HHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           31 AVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .-.++.|+..|.+    ++.|+.|||+.+|+    ++..+.+.|+.|...|++...
T Consensus        25 ~~~r~~IL~~L~~----~~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~   72 (106)
T 1r1u_A           25 DYNRIRIMELLSV----SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK   72 (106)
T ss_dssp             SHHHHHHHHHHHH----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             CHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence            3455667777875    48999999999999    999999999999999999976

>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A

Probab=95.58  E-value=0.0038  Score=46.33  Aligned_cols=46  Identities=20%  Similarity=0.213  Sum_probs=39.9

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .++.|+..|.+    ++.|+.|||+.+|+    ++..+.+.|+.|...|++...
T Consensus        26 ~r~~IL~~L~~----~~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~   71 (108)
T 2kko_A           26 RRLQILDLLAQ----GERAVEAIATATGM----NLTTASANLQALKSGGLVEAR   71 (108)
T ss_dssp             TTHHHHHHHTT----CCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHc----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence            34556667765    48999999999999    999999999999999999976

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=95.52  E-value=0.028  Score=50.00  Aligned_cols=123  Identities=11%  Similarity=0.032  Sum_probs=77.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeechhHhhhCCCC-----------------------------CCe----
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDLPHVIEHVPPH-----------------------------PCM----  235 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~-----------------------------~gv----  235 (333)
                      +...||++|||-=..+..+.  +| +++++-+|.|.+++..++.                             .++    
T Consensus       102 g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~  179 (310)
T 2uyo_A          102 GIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA  179 (310)
T ss_dssp             TCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred             CCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCC
Confidence            45789999999888766654  34 4788889999887754321                             000    


Q ss_pred             -------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhC-------CCCCc-C
Q 035738          236 -------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQS-------PGGKE-R  300 (333)
Q Consensus       236 -------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~-------~~g~~-r  300 (333)
                             .+||+++++++.++|+.+.+.+.||+.++ +|.+.++..  ...........-.+-...       ..... +
T Consensus       180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~-~d~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~  256 (310)
T 2uyo_A          180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIA-VETSPLHGD--EWREQMQLRFRRVSDALGFEQAVDVQELIYHD  256 (310)
T ss_dssp             CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEE-EECCCTTCS--HHHHHHHHHHHHHHC-----------CCTTCC
T ss_pred             CEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEE-EEecCCCCc--chhHHHHHHHHHHHHHcCCcCCCCccccccCC
Confidence                   78899999999999999999998887754 455544321  000000000000000000       01112 2


Q ss_pred             C-HHHHHHHHHhCCCCee
Q 035738          301 T-RHEFMTLATGAGFSGI  317 (333)
Q Consensus       301 t-~~e~~~ll~~aGf~~~  317 (333)
                      + .++..++|.+.||+.+
T Consensus       257 ~~~~~~~~~f~~~G~~~~  274 (310)
T 2uyo_A          257 ENRAVVADWLNRHGWRAT  274 (310)
T ss_dssp             TTCCCHHHHHTTTTEEEE
T ss_pred             CChHHHHHHHHHCcCccc
Confidence            5 7899999999999887

>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}

Probab=95.52  E-value=0.0062  Score=52.68  Aligned_cols=59  Identities=17%  Similarity=0.165  Sum_probs=48.5

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccccc
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY  105 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l  105 (333)
                      +.|++.|...+  ++.|+.|||+++|+    +..-+.|+|+.|...|++.++      ++.|++++..-.+
T Consensus        17 l~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~------~~~Y~Lg~~~~~l   75 (257)
T 2g7u_A           17 FAVLLAFDAQR--PNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGS------GGRWSLTPRVLSI   75 (257)
T ss_dssp             HHHHHTCSSSC--SSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------TTEEEECGGGHHH
T ss_pred             HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC------CCEEEEcHHHHHH
Confidence            45677776532  48999999999999    999999999999999999986      5789998765433

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=95.38  E-value=0.021  Score=44.49  Aligned_cols=78  Identities=15%  Similarity=0.130  Sum_probs=46.4

Q ss_pred             CCCCeEEEEcCCcc-HHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---C------CeEEEccCC-hhHHHHHHHHHHHh
Q 035738          189 DNIKQLVDVGGGIG-VTLQAITTKYPYIKGINFDL-PHVIEHVPPH---P------CMWILHDWN-DEHCLKLLKNCYKS  256 (333)
Q Consensus       189 ~~~~~vlDVGgG~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~------gv~vLh~~~-~~~~~~lL~~~~~~  256 (333)
                      ....+|||||||+| ..+..|++. .+..+++.|+ |..++..+..   |      +..+.+.+. +.+...-+-++++.
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~~v~dDiF~P~~~~Y~~~DLIYsirPP~El~~~i~~lA~~  112 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGGIVRDDITSPRMEIYRGAALIYSIRPPAEIHSSLMRVADA  112 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTTEECCCSSSCCHHHHTTEEEEEEESCCTTTHHHHHHHHHH
T ss_pred             CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccceEEccCCCCcccccCCcCEEEEcCCCHHHHHHHHHHHHH
Confidence            35679999999999 588877764 4577999998 7666633321   2      225554432 33333334444443


Q ss_pred             CCCCcEEEEEeee
Q 035738          257 IPEDGKVIAVELM  269 (333)
Q Consensus       257 L~pgG~l~i~e~~  269 (333)
                      .  |.-++|.-..
T Consensus       113 v--~adliI~pL~  123 (153)
T 2k4m_A          113 V--GARLIIKPLT  123 (153)
T ss_dssp             H--TCEEEEECBT
T ss_pred             c--CCCEEEEcCC
Confidence            3  4555555443

>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}

Probab=95.34  E-value=0.018  Score=45.84  Aligned_cols=46  Identities=22%  Similarity=0.270  Sum_probs=39.2

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS  100 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~  100 (333)
                      ++.|+++||+.+++    ++..++++|..|...|+|....  | .++.|.++.
T Consensus        43 ~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~r--G-~~GGy~Lar   88 (159)
T 3lwf_A           43 GPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSIR--G-AHGGYVLNG   88 (159)
T ss_dssp             CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC--S-TTCEEEECS
T ss_pred             CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEec--C-CCCceEecC
Confidence            58999999999999    9999999999999999999762  2 246677653

>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}

Probab=95.33  E-value=0.011  Score=41.29  Aligned_cols=50  Identities=20%  Similarity=0.285  Sum_probs=41.6

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQL-----TTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~-----g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      -+..|++.|.+.+ +++.|++||++.+     ++    +..-+.|.|+.|...|+|.+..
T Consensus        18 ~r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~~   72 (83)
T 2fu4_A           18 PRLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRHN   72 (83)
T ss_dssp             HHHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEEe
Confidence            4456888887531 0389999999999     88    8999999999999999999873

>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*

Probab=95.30  E-value=0.011  Score=45.89  Aligned_cols=50  Identities=22%  Similarity=0.172  Sum_probs=43.0

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV  106 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~  106 (333)
                      ++.|..+||+.+|+    ++..+.+.++.|...|+|.+.     ....|.+|+.+..+.
T Consensus        21 ~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~-----~~~~~~LT~~g~~~~   70 (142)
T 1on2_A           21 GYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE-----KYRGLVLTSKGKKIG   70 (142)
T ss_dssp             SSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE-----TTTEEEECHHHHHHH
T ss_pred             CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe-----eCceEEEchhHHHHH
Confidence            48999999999999    999999999999999999986     246788888775443

>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}

Probab=95.26  E-value=0.0083  Score=52.00  Aligned_cols=57  Identities=18%  Similarity=0.255  Sum_probs=46.0

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS  102 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~  102 (333)
                      +.|++.|...+  ++.|+.|||+++|+    +..-+.|+|+.|...|++.+++     .+.|++++..
T Consensus        26 l~iL~~l~~~~--~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~~-----~~~Y~lg~~~   82 (260)
T 2o0y_A           26 IDLLELFDAAH--PTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSRA-----DGSYSLGPEM   82 (260)
T ss_dssp             HHHHTTCBTTB--SSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEECT-----TSCEEECHHH
T ss_pred             HHHHHHHhhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEECC-----CCeEEecHHH
Confidence            44667776422  48999999999999    9999999999999999999872     2389887654

>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}

Probab=95.26  E-value=0.0067  Score=52.76  Aligned_cols=57  Identities=18%  Similarity=0.194  Sum_probs=47.4

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccc
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSK  103 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~  103 (333)
                      +.|++.|...+  ++.|+.|||+++|+    +..-+.|+|+.|...|++.++      ++.|++++..-
T Consensus        24 l~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~~------~~~Y~Lg~~~~   80 (265)
T 2ia2_A           24 LAVIRCFDHRN--QRRTLSDVARATDL----TRATARRFLLTLVELGYVATD------GSAFWLTPRVL   80 (265)
T ss_dssp             HHHHHTCCSSC--SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEES------SSEEEECGGGG
T ss_pred             HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec------CCEEEEcHHHH
Confidence            45677776432  48999999999999    999999999999999999985      57899886543

>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0

Probab=95.24  E-value=0.0076  Score=44.95  Aligned_cols=60  Identities=17%  Similarity=0.204  Sum_probs=46.2

Q ss_pred             ChhhHhhhcCCCCCCC--HHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738           36 GIFEIIDKAGPGAKLS--ASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV  106 (333)
Q Consensus        36 glfd~L~~~~~~g~~t--~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~  106 (333)
                      .|+..|..    |+.+  ..||++.+ |+    .+..+.+.|+.|...|+|++...   ....|++|+.+..+.
T Consensus        31 ~IL~~L~~----g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~---r~~~y~LT~~G~~l~   93 (111)
T 3df8_A           31 LIISVLGN----GSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRSG---QITTYALTEKGMNVR   93 (111)
T ss_dssp             HHHHHHTS----SSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEES---SSEEEEECHHHHHHH
T ss_pred             HHHHHHhc----CCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEeec---CcEEEEECccHHHHH
Confidence            34445554    4777  99999999 99    99999999999999999998631   145677777775444

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=95.23  E-value=0.068  Score=48.42  Aligned_cols=36  Identities=17%  Similarity=0.053  Sum_probs=30.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhH
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHV  225 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~  225 (333)
                      +..+.++||+||++|.++..++++  +.+++++|...+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l  244 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPM  244 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhc
Confidence            457899999999999999999987  478999997433

>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A

Probab=95.22  E-value=0.013  Score=44.56  Aligned_cols=47  Identities=17%  Similarity=0.329  Sum_probs=41.8

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      -.++.|+..|.+    ++.++.+||+.+|+    .+..+.+.|+.|...|++...
T Consensus        46 ~~rl~IL~~L~~----~~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~   92 (122)
T 1r1t_A           46 PNRLRLLSLLAR----SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYR   92 (122)
T ss_dssp             HHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence            356678888876    48999999999999    999999999999999999976

>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A

Probab=95.21  E-value=0.022  Score=44.54  Aligned_cols=46  Identities=17%  Similarity=0.255  Sum_probs=38.9

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS  100 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~  100 (333)
                      ++.|.++||+.+++    ++..++++|..|...|+|....  | .++.|.+..
T Consensus        27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~r--G-~~GGy~Lar   72 (143)
T 3t8r_A           27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSVR--G-AKGGYQLRV   72 (143)
T ss_dssp             CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECS--S-SSSEEEESS
T ss_pred             CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEecC--C-CCCCeeecC
Confidence            48999999999999    9999999999999999998652  2 246677654

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=95.20  E-value=0.02  Score=52.27  Aligned_cols=40  Identities=10%  Similarity=0.125  Sum_probs=33.9

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ..+|||+|||+|.++..+++..  .+++++|+ +.+++.|+++
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n  254 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYN  254 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHH
T ss_pred             CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHH
Confidence            4689999999999999888754  47999999 8898888754

>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}

Probab=95.20  E-value=0.0089  Score=47.28  Aligned_cols=67  Identities=13%  Similarity=0.216  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738           26 PMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS  102 (333)
Q Consensus        26 ~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~  102 (333)
                      ..+|.--.++.|+..|.+    ++.|+.|||+.+|+    .+..+.+.|+.|...|+|.... .| ....|++|+..
T Consensus        52 l~aL~~p~R~~IL~~L~~----~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~~-~G-r~~~y~lt~~~  118 (151)
T 3f6v_A           52 LEVAAEPTRRRLVQLLTS----GEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPRK-DG-RFRYYRLDPQG  118 (151)
T ss_dssp             HHHHTSHHHHHHHHHGGG----CCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEEE-ET-TEEEEEECHHH
T ss_pred             HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEe-cC-CEEEEEEChHH
Confidence            456666778899999985    59999999999999    9999999999999999999762 11 12346666543

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=95.14  E-value=0.017  Score=49.89  Aligned_cols=36  Identities=17%  Similarity=0.210  Sum_probs=30.2

Q ss_pred             CCCC--CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhH
Q 035738          188 FDNI--KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHV  225 (333)
Q Consensus       188 ~~~~--~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~  225 (333)
                      ..+.  .+|||++||+|..+..++.+  ..+++++|. |.+
T Consensus        84 l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~  122 (258)
T 2oyr_A           84 IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVV  122 (258)
T ss_dssp             CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHH
T ss_pred             ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHH
Confidence            4445  79999999999999999998  457999999 654

>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A

Probab=95.07  E-value=0.082  Score=41.13  Aligned_cols=44  Identities=11%  Similarity=0.229  Sum_probs=39.1

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceee
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVEC   85 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~   85 (333)
                      +..++..| ..   ++.|..+||+.+++    ++..+.+.++.|...|++.+
T Consensus        40 q~~iL~~l-~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r   83 (151)
T 3kp7_A           40 QSHVLNML-SI---EALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKL   83 (151)
T ss_dssp             HHHHHHHH-HH---SCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC
T ss_pred             HHHHHHHH-Hc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence            34477888 54   59999999999999    99999999999999999997

>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69

Probab=95.01  E-value=0.013  Score=43.75  Aligned_cols=80  Identities=14%  Similarity=0.049  Sum_probs=55.1

Q ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeeecc
Q 035738           10 DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECSLD   88 (333)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~~~   88 (333)
                      .-+...+.++..+.|...+         +..|.+    |+.+..|||+.+ |+    ++..+.+.|+.|...|+|.+...
T Consensus         9 ~c~~~~~l~~l~~~~~~~I---------L~~L~~----~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~   71 (112)
T 1z7u_A            9 QTSINLALSTINGKWKLSL---------MDELFQ----GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESF   71 (112)
T ss_dssp             HHHHHHHHHTTCSTTHHHH---------HHHHHH----SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEE
T ss_pred             CCCHHHHHHHHcCccHHHH---------HHHHHh----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeec
Confidence            3445555555555555443         344554    389999999999 99    99999999999999999998742


Q ss_pred             C-CCccccccccccccccc
Q 035738           89 A-SGARRLYSLNSVSKYYV  106 (333)
Q Consensus        89 ~-~~~~~~y~~t~~~~~l~  106 (333)
                      . ++..-.|.+|+.+..+.
T Consensus        72 ~~d~r~~~~~LT~~G~~~~   90 (112)
T 1z7u_A           72 NELPPRVEYTLTPEGYALY   90 (112)
T ss_dssp             CCSSCEEEEEECHHHHHHH
T ss_pred             CCCCCeEEEEECHhHHHHH
Confidence            1 11123477777765443

>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0

Probab=94.96  E-value=0.038  Score=44.12  Aligned_cols=47  Identities=21%  Similarity=0.388  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV  101 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~  101 (333)
                      ++.|.++||+.+++    ++..++++|..|...|++....  | .++.|.+...
T Consensus        27 ~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~r--G-~~GGy~Lar~   73 (162)
T 3k69_A           27 SKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGTV--G-KNGGYQLDLA   73 (162)
T ss_dssp             SCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEEC--S-TTCEEECCSC
T ss_pred             CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec--C-CCCCeEecCC
Confidence            48999999999999    9999999999999999998652  2 2567887643

>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69

Probab=94.92  E-value=0.019  Score=44.98  Aligned_cols=54  Identities=17%  Similarity=0.150  Sum_probs=43.2

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeecc-CCCccccccccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLD-ASGARRLYSLNSVSKYYV  106 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~-~~~~~~~y~~t~~~~~l~  106 (333)
                      |+.+..||++.+|+    ++..+.+.|+.|...|++++... ..+ ...|.+|+.+..+.
T Consensus        36 g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y~LT~~G~~l~   90 (146)
T 2f2e_A           36 GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGS-HQEYRLTDKGRALF   90 (146)
T ss_dssp             TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSS-CEEEEECHHHHTTH
T ss_pred             CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEecCCCC-eEEEEECchHHHHH
Confidence            48999999999999    99999999999999999998742 112 34678887765443

>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}

Probab=94.87  E-value=0.041  Score=42.56  Aligned_cols=67  Identities=15%  Similarity=0.234  Sum_probs=49.7

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCcccccccccccccc
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYY  105 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l  105 (333)
                      ..+..++..|...   ++.|..+||+.+++    ++..+.++++.|...|+|.+.... +.....+.+|+.+..+
T Consensus        31 ~~q~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~   98 (145)
T 3g3z_A           31 YNLFAVLYTLATE---GSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAY   98 (145)
T ss_dssp             HHHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHH
T ss_pred             HHHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHH
Confidence            3456678888776   48999999999999    999999999999999999986311 1011235566666544

>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}

Probab=94.83  E-value=0.03  Score=43.02  Aligned_cols=67  Identities=15%  Similarity=0.130  Sum_probs=51.2

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCccccccccccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYV  106 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~  106 (333)
                      .++.++..|...   ++.|..+||+.+++    ++..+.+.++.|...|++.+.... +.....|.+|+.+..+.
T Consensus        32 ~~~~iL~~l~~~---~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~   99 (142)
T 3bdd_A           32 TRYSILQTLLKD---APLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL   99 (142)
T ss_dssp             HHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence            455578888776   48999999999999    999999999999999999987321 11123467777776555

>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}

Probab=94.77  E-value=0.016  Score=49.59  Aligned_cols=63  Identities=13%  Similarity=0.190  Sum_probs=51.7

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV  106 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~  106 (333)
                      .++.++..|.+.   ++.|..|||+.+|+    ++..+.|.|+.|...|++.+..    ....|.+|+.+..+.
T Consensus       153 ~~~~IL~~L~~~---~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~~----r~~~~~LT~~G~~l~  215 (244)
T 2wte_A          153 EEMKLLNVLYET---KGTGITELAKMLDK----SEKTLINKIAELKKFGILTQKG----KDRKVELNELGLNVI  215 (244)
T ss_dssp             HHHHHHHHHHHH---TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET----TTTEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC----CccEEEECHHHHHHH
Confidence            355577777655   48999999999999    9999999999999999999862    356788888886554

>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}

Probab=94.72  E-value=0.02  Score=43.44  Aligned_cols=48  Identities=10%  Similarity=0.212  Sum_probs=41.5

Q ss_pred             HHhChhhHhhhcCCCCC-CCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAK-LSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~-~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .+..|+..|.+.+  +| +|+.|||+.+++    +..-+.|.|+.|...|++.+.
T Consensus        27 ~e~~il~~L~~~~--~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~   75 (123)
T 3r0a_A           27 ADLNVMKSFLNEP--DRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS   75 (123)
T ss_dssp             HHHHHHHHHHHST--TCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHCC--CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence            3556777887653  45 899999999999    999999999999999999985

>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69

Probab=94.70  E-value=0.015  Score=42.97  Aligned_cols=78  Identities=14%  Similarity=0.158  Sum_probs=54.8

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeeeccC-
Q 035738           12 SFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECSLDA-   89 (333)
Q Consensus        12 ~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-   89 (333)
                      +...+.+++.+.|...+|.         .|.+    |+.+..||++.+ |+    ++..+.+.|+.|...|+|.+.... 
T Consensus        14 ~~~~~l~~l~~~~~~~IL~---------~L~~----~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~~~   76 (107)
T 2fsw_A           14 PVRKSMQIFAGKWTLLIIF---------QINR----RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPE   76 (107)
T ss_dssp             HHHHHHHHHTSSSHHHHHH---------HHTT----SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECS
T ss_pred             CHHHHHHHHcCccHHHHHH---------HHHh----CCcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEEeecCC
Confidence            4555566666666554443         4443    489999999999 59    999999999999999999986421 


Q ss_pred             CCccccccccccccccc
Q 035738           90 SGARRLYSLNSVSKYYV  106 (333)
Q Consensus        90 ~~~~~~y~~t~~~~~l~  106 (333)
                      ++....|.+|+.+..+.
T Consensus        77 d~r~~~y~LT~~G~~l~   93 (107)
T 2fsw_A           77 VPPRVEYSLTPLGEKVL   93 (107)
T ss_dssp             SSCEEEEEECHHHHTTH
T ss_pred             CCCeeEEEECccHHHHH
Confidence            11123588888775443

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=94.54  E-value=0.14  Score=45.15  Aligned_cols=22  Identities=14%  Similarity=-0.097  Sum_probs=17.2

Q ss_pred             HHHHHHHHHhCCCCeeEEeecC
Q 035738          302 RHEFMTLATGAGFSGISCERAI  323 (333)
Q Consensus       302 ~~e~~~ll~~aGf~~~~~~~~~  323 (333)
                      ....++-|.+|||++.++-..+
T Consensus       228 ag~VRR~L~~aGF~V~k~~G~g  249 (308)
T 3vyw_A          228 SLSVRKSLLTLGFKVGSSREIG  249 (308)
T ss_dssp             CHHHHHHHHHTTCEEEEEECC-
T ss_pred             cHHHHHHHHHCCCEEEecCCCC
Confidence            5678899999999987776554

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=94.53  E-value=0.0095  Score=67.15  Aligned_cols=122  Identities=16%  Similarity=0.161  Sum_probs=53.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCC-----CeEEEeec-hhHhhhCCCC---------------C--------Ce----E
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPY-----IKGINFDL-PHVIEHVPPH---------------P--------CM----W  236 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~---------------~--------gv----~  236 (333)
                      ...+||+||+|+|..+..+++...+     .+++..|+ +...+.+++.               +        ++    +
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence            4579999999999887776665432     24677777 4444333321               1        22    6


Q ss_pred             EEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCe
Q 035738          237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSG  316 (333)
Q Consensus       237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~  316 (333)
                      +||.-++..  ..|+++++.|+|||++++.|......     ......+++..-   -......+.++|.++|+++||..
T Consensus      1320 vl~~t~~~~--~~l~~~~~lL~p~G~l~~~e~~~~~~-----~g~~~~~~~~~~---r~~~~~~~~~~w~~~l~~~gf~~ 1389 (2512)
T 2vz8_A         1320 ALATLGDPA--VAVGNMAATLKEGGFLLLHTLLAGHP-----LGEMVGFLTSPE---QGGRHLLSQDQWESLFAGASLHL 1389 (2512)
T ss_dssp             C----------------------CCEEEEEEC----------------------------------CTTTTSSTTTTEEE
T ss_pred             cccccccHH--HHHHHHHHhcCCCcEEEEEecccccc-----cccccccccccc---ccCCcccCHHHHHHHHHhCCCce
Confidence            677554443  78999999999999999988643110     000000110000   01123346778999999999988


Q ss_pred             eEEee
Q 035738          317 ISCER  321 (333)
Q Consensus       317 ~~~~~  321 (333)
                      +.+..
T Consensus      1390 ~~~~~ 1394 (2512)
T 2vz8_A         1390 VALKR 1394 (2512)
T ss_dssp             EEEEE
T ss_pred             eeecc
Confidence            76643

>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28

Probab=94.52  E-value=0.048  Score=41.65  Aligned_cols=48  Identities=21%  Similarity=0.155  Sum_probs=41.2

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      .++.++..|...   ++.|..+||+.+++    ++..+.+.++.|...|++.+..
T Consensus        35 ~~~~iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~   82 (138)
T 1jgs_A           35 AQFKVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLP   82 (138)
T ss_dssp             HHHHHHHHHHHH---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHhc---CCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecC
Confidence            345567777765   48999999999999    9999999999999999999863

>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}

Probab=94.48  E-value=0.037  Score=43.86  Aligned_cols=67  Identities=18%  Similarity=0.246  Sum_probs=48.9

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCC-Cccccccccccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYYV  106 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~-~~~~~y~~t~~~~~l~  106 (333)
                      .+..++..|...   ++.|..+||+.+++    ++..+.++++.|...|+|.+..... ...-.+.+|+.+..+.
T Consensus        47 ~q~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~  114 (162)
T 3k0l_A           47 PQFTALSVLAAK---PNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL  114 (162)
T ss_dssp             HHHHHHHHHHHC---TTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence            345577788776   48999999999999    9999999999999999999874111 0111255565554433

>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}

Probab=94.47  E-value=0.028  Score=43.05  Aligned_cols=48  Identities=15%  Similarity=0.338  Sum_probs=41.8

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..++.++..|...   ++.|..+||+.+++    ++..+.+.++.|...|++.+.
T Consensus        33 ~~~~~iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~   80 (139)
T 3bja_A           33 YVQFGVIQVLAKS---GKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTE   80 (139)
T ss_dssp             HHHHHHHHHHHHS---CSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeec
Confidence            3455677778775   48999999999999    999999999999999999986

>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48

Probab=94.44  E-value=0.014  Score=42.30  Aligned_cols=64  Identities=11%  Similarity=0.168  Sum_probs=47.1

Q ss_pred             HhChhhHhhhcCCCCCCCHHHH----HHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738           34 ELGIFEIIDKAGPGAKLSASDI----AAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV  106 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~el----a~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~  106 (333)
                      ++.++..|...   ++.|..+|    |+.+++    ++..+.+.++.|...|++.+....  ....|.+|+.+..+.
T Consensus        10 q~~iL~~l~~~---~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~~~--r~~~~~LT~~G~~~~   77 (99)
T 1tbx_A           10 EAIVLAYLYDN---EGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQER--GEKRLYLTEKGKLFA   77 (99)
T ss_dssp             HHHHHHHHTTC---TTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEEET--TEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHc---CCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEecC--CceEEEECHHHHHHH
Confidence            34566666664   48999999    999999    999999999999999999986311  133455666555443

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=94.37  E-value=0.047  Score=48.74  Aligned_cols=54  Identities=13%  Similarity=0.116  Sum_probs=46.0

Q ss_pred             hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCC
Q 035738          177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ...++++.+. ..++..+||..+|.|..+..++++. |+.+++++|. |.+++.+++
T Consensus        45 Ll~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~r  100 (347)
T 3tka_A           45 LLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT  100 (347)
T ss_dssp             TTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTT
T ss_pred             cHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHh
Confidence            4567777776 7778899999999999999999985 7899999999 888888754

>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28

Probab=94.36  E-value=0.031  Score=42.88  Aligned_cols=49  Identities=6%  Similarity=0.201  Sum_probs=40.9

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      +..++..|...+ +++.|..+||+.+++    ++..+.+.++.|...|++.+..
T Consensus        36 ~~~iL~~l~~~~-~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~   84 (141)
T 3bro_A           36 QMTIIDYLSRNK-NKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKV   84 (141)
T ss_dssp             HHHHHHHHHHTT-TSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHCC-CCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeC
Confidence            445677777652 127999999999999    9999999999999999999863

>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}

Probab=94.28  E-value=0.024  Score=44.07  Aligned_cols=48  Identities=19%  Similarity=0.269  Sum_probs=41.6

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..++.++..|...   ++.|..+||+.+++    ++..+.+.++.|...|+|.+.
T Consensus        40 ~~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~   87 (148)
T 3nrv_A           40 MTEWRIISVLSSA---SDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVN   87 (148)
T ss_dssp             HHHHHHHHHHHHS---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-
T ss_pred             HHHHHHHHHHHcC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEee
Confidence            3456677788776   48999999999999    999999999999999999986

>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}

Probab=94.18  E-value=0.028  Score=43.31  Aligned_cols=48  Identities=15%  Similarity=0.045  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY  105 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l  105 (333)
                      ++.|..+||+.+|+    ++..+.+.++.|...|++.+.      ...|.+|+.+..+
T Consensus        30 ~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~------~~~~~Lt~~g~~~   77 (139)
T 2x4h_A           30 EGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK------EDGVWITNNGTRS   77 (139)
T ss_dssp             SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------TTEEEECHHHHHH
T ss_pred             CCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec------CCeEEEChhHHHH
Confidence            58999999999999    999999999999999999986      3567777766543

>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69

Probab=94.17  E-value=0.024  Score=43.58  Aligned_cols=62  Identities=16%  Similarity=0.151  Sum_probs=46.5

Q ss_pred             hhhHhhhcCCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeeeccC-CCccccccccccccccc
Q 035738           37 IFEIIDKAGPGAKLSASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYV  106 (333)
Q Consensus        37 lfd~L~~~~~~g~~t~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~  106 (333)
                      |+..|..    |+.+..||++.+ |+    ++..+.+.|+.|...|+|.+.... +...-.|.+|+.+..+.
T Consensus        40 IL~~L~~----g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~  103 (131)
T 1yyv_A           40 ILVALRD----GTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVS  103 (131)
T ss_dssp             HHHHGGG----CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred             HHHHHHc----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHH
Confidence            4444554    489999999999 79    999999999999999999986421 11123588887775544

>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=94.12  E-value=0.035  Score=43.01  Aligned_cols=49  Identities=20%  Similarity=0.260  Sum_probs=43.0

Q ss_pred             HHHHhChhhHhhh-cCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           31 AVYELGIFEIIDK-AGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        31 ~a~~lglfd~L~~-~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ...++.++..|.. .   ++.|..+||+.+|+    ++..+.+.++.|...|+|.+.
T Consensus        34 ~~~~~~iL~~l~~~~---~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~   83 (147)
T 2hr3_A           34 QFSQLVVLGAIDRLG---GDVTPSELAAAERM----RSSNLAALLRELERGGLIVRH   83 (147)
T ss_dssp             HHHHHHHHHHHHHTT---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             CHHHHHHHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeC
Confidence            3455677888876 5   58999999999999    999999999999999999986

>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}

Probab=94.11  E-value=0.022  Score=44.04  Aligned_cols=48  Identities=17%  Similarity=0.210  Sum_probs=42.0

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..+..++..|...   ++.|..+||+.+++    ++..+.++++.|...|+|++.
T Consensus        37 ~~~~~iL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~   84 (143)
T 3oop_A           37 PEQWSVLEGIEAN---EPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVRE   84 (143)
T ss_dssp             HHHHHHHHHHHHH---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHHc---CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeecc
Confidence            4455677777765   48999999999999    999999999999999999986

>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50

Probab=94.08  E-value=0.041  Score=40.02  Aligned_cols=47  Identities=17%  Similarity=0.302  Sum_probs=41.0

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .+..|+..|...   ++.|..+||+.+|+    ++..+.+.|+.|...|++.+.
T Consensus        21 ~~~~il~~l~~~---~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~   67 (109)
T 1sfx_A           21 SDVRIYSLLLER---GGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE   67 (109)
T ss_dssp             HHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence            455567777665   48999999999999    999999999999999999986

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=94.07  E-value=0.05  Score=48.32  Aligned_cols=43  Identities=14%  Similarity=0.106  Sum_probs=35.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVP  230 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~  230 (333)
                      ..+..+|||+|||+|..+..+++.. +..+++++|+ +..++.++
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~  144 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA  144 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence            5567899999999999999999874 5689999999 77766544

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.04  E-value=0.047  Score=48.14  Aligned_cols=49  Identities=16%  Similarity=0.181  Sum_probs=37.4

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP  230 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~  230 (333)
                      ...++..+.  .....|||++||+|.++..+++..  .+++++|+ +.+++.++
T Consensus       225 ~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~g--~~~~g~e~~~~~~~~a~  274 (297)
T 2zig_A          225 AERLVRMFS--FVGDVVLDPFAGTGTTLIAAARWG--RRALGVELVPRYAQLAK  274 (297)
T ss_dssp             HHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             HHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHH
Confidence            444555442  356789999999999999988754  57999999 77777665

>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}

Probab=94.01  E-value=0.028  Score=40.78  Aligned_cols=50  Identities=18%  Similarity=0.167  Sum_probs=40.4

Q ss_pred             HHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           29 MQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        29 l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +.--.++.|+..|...   |+.++.|||+.+|+    ++..+.+.|+.|... ++...
T Consensus        24 L~~~~Rl~IL~~l~~~---~~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~   73 (99)
T 2zkz_A           24 MAHPMRLKIVNELYKH---KALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRN   73 (99)
T ss_dssp             HCSHHHHHHHHHHHHH---SCEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEE
T ss_pred             hCCHHHHHHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhhe
Confidence            3344566777555443   48999999999999    999999999999999 99865

>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=94.01  E-value=0.022  Score=43.66  Aligned_cols=47  Identities=4%  Similarity=0.105  Sum_probs=42.0

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .++.++..|...   ++.|..+||+.+++    ++..+.+.++.|...|++.+.
T Consensus        39 ~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~   85 (140)
T 2nnn_A           39 TQWAALVRLGET---GPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRS   85 (140)
T ss_dssp             HHHHHHHHHHHH---SSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEee
Confidence            456688888776   48999999999999    999999999999999999986

>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55

Probab=93.89  E-value=0.041  Score=43.21  Aligned_cols=61  Identities=15%  Similarity=0.127  Sum_probs=44.8

Q ss_pred             HHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccc
Q 035738           26 PMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV  101 (333)
Q Consensus        26 ~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~  101 (333)
                      ..++++...+...   ..    ++.|+++||+.+++    ++..++++|..|...|+|....  |  .+.|.++.-
T Consensus        14 ~yAl~~L~~La~~---~~----~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~r--G--~GGy~L~~~   74 (149)
T 1ylf_A           14 SIAVHILSILKNN---PS----SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR--G--PGGAGLLKD   74 (149)
T ss_dssp             HHHHHHHHHHHHS---CG----GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC-------CCEEESSC
T ss_pred             HHHHHHHHHHHhC---CC----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEcc--C--CCceEeCCC
Confidence            3456665555331   11    48999999999999    9999999999999999998752  2  466776643

>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}

Probab=93.78  E-value=0.056  Score=36.73  Aligned_cols=56  Identities=14%  Similarity=0.267  Sum_probs=47.2

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN   99 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t   99 (333)
                      .+-.|+++|.+.|  .|+++.+||+.+|+    +..-+.+.|..|...|.+..+     ..-.|.++
T Consensus        20 ~eekVLe~LkeaG--~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~SP-----kRCyw~~~   75 (80)
T 2lnb_A           20 LEQRILQVLTEAG--SPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSLT-----SPATWCLG   75 (80)
T ss_dssp             HHHHHHHHHHHHT--SCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE-----ETTEEEES
T ss_pred             HHHHHHHHHHHcC--CCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccCC-----CCceeeCC
Confidence            4567889999876  79999999999999    999999999999999999876     24455554

>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*

Probab=93.76  E-value=0.034  Score=42.46  Aligned_cols=47  Identities=15%  Similarity=0.216  Sum_probs=41.2

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .++.++..|...   ++.|..+||+.+++    ++..+.+.++.|...|++.+.
T Consensus        30 ~~~~iL~~l~~~---~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~   76 (138)
T 3bpv_A           30 AQVACLLRIHRE---PGIKQDELATFFHV----DKGTIARTLRRLEESGFIERE   76 (138)
T ss_dssp             HHHHHHHHHHHS---TTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEee
Confidence            345567777775   48999999999999    999999999999999999986

>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=93.73  E-value=0.042  Score=42.40  Aligned_cols=46  Identities=15%  Similarity=0.127  Sum_probs=39.8

Q ss_pred             HhChhhHh-hhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           34 ELGIFEII-DKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        34 ~lglfd~L-~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +..++..| ...   ++.|..+||+.+++    ++..+.+.++.|...|++.+.
T Consensus        39 ~~~iL~~l~~~~---~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~   85 (146)
T 2fbh_A           39 RWLVLLHLARHR---DSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRL   85 (146)
T ss_dssp             HHHHHHHHHHCS---SCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeec
Confidence            44566777 443   58999999999999    999999999999999999986

>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A

Probab=93.72  E-value=0.04  Score=42.56  Aligned_cols=47  Identities=6%  Similarity=0.046  Sum_probs=40.6

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      .++.++..|. .   ++.|..+||+.+++    ++..+.+.++.|...|++.+..
T Consensus        38 ~~~~iL~~l~-~---~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~   84 (146)
T 2gxg_A           38 LDFLVLRATS-D---GPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVR   84 (146)
T ss_dssp             HHHHHHHHHT-T---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHh-c---CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeec
Confidence            4555667776 4   58999999999999    9999999999999999999863

>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28

Probab=93.72  E-value=0.032  Score=42.94  Aligned_cols=49  Identities=6%  Similarity=0.162  Sum_probs=42.2

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      ..++.++..|...   ++.|..+||+.+++    ++..+.+.++.|...|++.+..
T Consensus        37 ~~~~~iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~   85 (142)
T 2bv6_A           37 YPQFLVLTILWDE---SPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRER   85 (142)
T ss_dssp             HHHHHHHHHHHHS---SEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeec
Confidence            3455677778765   48999999999999    9999999999999999999863

>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}

Probab=93.68  E-value=0.036  Score=43.77  Aligned_cols=47  Identities=15%  Similarity=0.173  Sum_probs=40.6

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .++.++..|...   ++.|..+||+.+++    ++..+.+.++.|...|+|.+.
T Consensus        50 ~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~   96 (162)
T 2fa5_A           50 PEWRVITILALY---PGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRE   96 (162)
T ss_dssp             HHHHHHHHHHHS---TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-
T ss_pred             HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeee
Confidence            345577778765   48999999999999    999999999999999999985

>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A

Probab=93.61  E-value=0.021  Score=44.05  Aligned_cols=67  Identities=15%  Similarity=0.111  Sum_probs=46.7

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCccccccccccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYV  106 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~  106 (333)
                      .+..++..|...   ++.|..+||+.+++    ++..+.++++.|...|+|++.+.. +...-.+.+|+.+..+.
T Consensus        37 ~q~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~  104 (140)
T 3hsr_A           37 TGYIVLMAIEND---EKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK  104 (140)
T ss_dssp             HHHHHHHHSCTT---CEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred             HHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence            334456666654   59999999999999    999999999999999999987311 00112355566554433

>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28

Probab=93.60  E-value=0.045  Score=42.88  Aligned_cols=48  Identities=19%  Similarity=0.138  Sum_probs=42.2

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..++.++..|...   ++.|..+||+.+++    ++..+.+.++.|...|++.+.
T Consensus        44 ~~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~   91 (154)
T 2eth_A           44 TTELYAFLYVALF---GPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVRE   91 (154)
T ss_dssp             HHHHHHHHHHHHH---CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEee
Confidence            3466677888776   48999999999999    999999999999999999986

>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}

Probab=93.60  E-value=0.04  Score=42.84  Aligned_cols=46  Identities=7%  Similarity=0.127  Sum_probs=40.8

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ++.++..|...   ++.|..+||+.+++    ++..+.+.++.|...|++.+.
T Consensus        44 ~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~   89 (150)
T 2rdp_A           44 QFVALQWLLEE---GDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARV   89 (150)
T ss_dssp             HHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeec
Confidence            45567778775   48999999999999    999999999999999999986

>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}

Probab=93.57  E-value=0.034  Score=43.60  Aligned_cols=66  Identities=14%  Similarity=0.115  Sum_probs=47.0

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCcccccccccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYY  105 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l  105 (333)
                      .++.++..|...   ++.|..+||+.+++    ++..+.+.++.|...|++.+.... +.....+.+|+.+..+
T Consensus        44 ~~~~iL~~l~~~---~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~  110 (155)
T 3cdh_A           44 PEWRVLACLVDN---DAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRAL  110 (155)
T ss_dssp             HHHHHHHHHSSC---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHH
T ss_pred             HHHHHHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHH
Confidence            345566777665   58999999999999    999999999999999999986210 0011235566555443

>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}

Probab=93.57  E-value=0.063  Score=42.19  Aligned_cols=54  Identities=20%  Similarity=0.277  Sum_probs=43.5

Q ss_pred             HhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccccc
Q 035738           40 IIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY  105 (333)
Q Consensus        40 ~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l  105 (333)
                      .|...   ++.|..+||+.+|+    ++..+.+.++.|...|+|.+.     .+..+.+|+.+..+
T Consensus        48 ~l~~~---~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~-----~~~~~~lT~~g~~~  101 (155)
T 2h09_A           48 LIREV---GEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMI-----PWRGVFLTAEGEKL  101 (155)
T ss_dssp             HHHHH---SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEE-----TTTEEEECHHHHHH
T ss_pred             HHHhC---CCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEe-----cCCceEEChhHHHH
Confidence            55554   47899999999999    999999999999999999986     24556677666443

>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}

Probab=93.53  E-value=0.04  Score=42.92  Aligned_cols=46  Identities=20%  Similarity=0.269  Sum_probs=40.9

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ++.++..|...   ++.|..+||+.+++    ++..+.+.++.|...|+|.+.
T Consensus        42 ~~~iL~~l~~~---~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~   87 (152)
T 3bj6_A           42 QRAILEGLSLT---PGATAPQLGAALQM----KRQYISRILQEVQRAGLIERR   87 (152)
T ss_dssp             HHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeec
Confidence            45567777765   48999999999999    999999999999999999986

>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48

Probab=93.49  E-value=0.02  Score=41.09  Aligned_cols=62  Identities=13%  Similarity=0.037  Sum_probs=43.9

Q ss_pred             hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCccc-HHHHHHHHhcccceeeeccCCCcccccccccccccc
Q 035738           37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMM-LDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY  105 (333)
Q Consensus        37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~-l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l  105 (333)
                      ++..|...|  .+.|..|||+.+++    ++.. +.+.++.|...|++..++. +.....+.+|+.+..+
T Consensus        20 ~L~~l~~~~--~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~~-drR~~~~~LT~~G~~~   82 (95)
T 2pg4_A           20 TLLEFEKKG--YEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEETL-SYRVKTLKLTEKGRRL   82 (95)
T ss_dssp             HHHHHHHTT--CCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEEE-ETTEEEEEECHHHHHH
T ss_pred             HHHHHHhcC--CCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCCC-CCCeEEEEECHhHHHH
Confidence            445555542  27999999999999    9999 9999999999999995421 1112235566655443

>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}

Probab=93.48  E-value=0.14  Score=40.63  Aligned_cols=67  Identities=15%  Similarity=0.194  Sum_probs=49.0

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCccccccccccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYV  106 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~  106 (333)
                      .++.++..|...   ++.|..+||+.+++    ++..+.+.++.|...|+|.+.... +...-.+.+|+.+..+.
T Consensus        46 ~~~~iL~~L~~~---~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~  113 (168)
T 2nyx_A           46 PQFRTLVILSNH---GPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVV  113 (168)
T ss_dssp             HHHHHHHHHHHH---CSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence            455677788775   48999999999999    999999999999999999986311 10112255666554433

>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28

Probab=93.46  E-value=0.032  Score=43.05  Aligned_cols=68  Identities=9%  Similarity=0.102  Sum_probs=49.2

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCccccccccccccccc
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYV  106 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~  106 (333)
                      ..++.++..|...   ++.|..+||+.+++    ++..+.+.++.|...|++.+.... +.....+.+|+.+..+.
T Consensus        33 ~~~~~iL~~l~~~---~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~  101 (145)
T 2a61_A           33 PAQFDILQKIYFE---GPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI  101 (145)
T ss_dssp             HHHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHH
Confidence            3456677778765   48999999999999    999999999999999999986310 00111355565554433

>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}

Probab=93.40  E-value=0.034  Score=43.34  Aligned_cols=49  Identities=12%  Similarity=0.179  Sum_probs=40.6

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..+..++..|...+  +++|..+||+.+++    ++..+.++++.|...|+|.+.
T Consensus        39 ~~q~~vL~~l~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~   87 (150)
T 3fm5_A           39 VRSYSVLVLACEQA--EGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRT   87 (150)
T ss_dssp             HHHHHHHHHHHHST--TCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-
T ss_pred             HHHHHHHHHHHhCC--CCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEee
Confidence            34555667776543  47899999999999    999999999999999999986

>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55

Probab=93.38  E-value=0.11  Score=40.50  Aligned_cols=44  Identities=23%  Similarity=0.284  Sum_probs=37.4

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccc
Q 035738           49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV  101 (333)
Q Consensus        49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~  101 (333)
                      + |+++||+.+++    ++..++++|..|...|+|....  |  .+.|.+..-
T Consensus        24 ~-s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~r--G--~GGy~Lar~   67 (145)
T 1xd7_A           24 T-SSEIIADSVNT----NPVVVRRMISLLKKADILTSRA--G--VPGASLKKD   67 (145)
T ss_dssp             C-CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCS--S--SSSCEESSC
T ss_pred             C-CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEeec--C--CCCceecCC
Confidence            5 99999999999    9999999999999999998752  2  466776643

>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28

Probab=93.32  E-value=0.042  Score=42.33  Aligned_cols=47  Identities=9%  Similarity=0.041  Sum_probs=40.8

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      +..++..|...   ++.|..+||+.+++    ++..+.+.++.|...|++.+..
T Consensus        31 ~~~iL~~l~~~---~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~   77 (144)
T 1lj9_A           31 QYLYLVRVCEN---PGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQE   77 (144)
T ss_dssp             HHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHC---cCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeec
Confidence            44567777765   48999999999999    9999999999999999999863

>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A

Probab=93.30  E-value=0.044  Score=42.79  Aligned_cols=68  Identities=15%  Similarity=0.167  Sum_probs=49.8

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCcccccccccccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYVP  107 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~~  107 (333)
                      .++.++..|...   ++.|..+||+.+++    ++..+.+.++.|...|+|.+.... +.....+.+|+.+..+..
T Consensus        48 ~~~~iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~  116 (153)
T 2pex_A           48 PQYLVMLVLWET---DERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRS  116 (153)
T ss_dssp             HHHHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGG
T ss_pred             HHHHHHHHHHhC---CCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHH
Confidence            455677778775   48999999999999    999999999999999999986310 001123666777665543

>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}

Probab=93.30  E-value=0.05  Score=42.04  Aligned_cols=47  Identities=17%  Similarity=0.304  Sum_probs=40.2

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..+..++..|...    +.|..+||+.+|+    ++..+.+.++.|...|+|.+.
T Consensus        38 ~~~~~iL~~l~~~----~~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~   84 (146)
T 3tgn_A           38 NTQEHILMLLSEE----SLTNSELARRLNV----SQAAVTKAIKSLVKEGMLETS   84 (146)
T ss_dssp             HHHHHHHHHHTTC----CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-
T ss_pred             HHHHHHHHHHHhC----CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEec
Confidence            3456677777764    4999999999999    999999999999999999986

>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}

Probab=93.26  E-value=0.23  Score=38.57  Aligned_cols=67  Identities=13%  Similarity=0.093  Sum_probs=48.0

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceee--ecc-CCCccccccccccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVEC--SLD-ASGARRLYSLNSVSKYYV  106 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~--~~~-~~~~~~~y~~t~~~~~l~  106 (333)
                      .++.++..|...   ++.|..+||+.+++    ++..+.+.++.|...|+|.+  ... .+...-.+.+|+.+..+.
T Consensus        42 ~~~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~  111 (154)
T 2qww_A           42 QQLAMINVIYST---PGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLS  111 (154)
T ss_dssp             HHHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHH
Confidence            345567777775   48999999999999    99999999999999999998  421 010112355666555443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.26  E-value=0.16  Score=50.30  Aligned_cols=127  Identities=14%  Similarity=0.111  Sum_probs=85.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCC--------CCeEEEeechhHhhhCC-------------------------------
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYP--------YIKGINFDLPHVIEHVP-------------------------------  230 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~-------------------------------  230 (333)
                      +...||-+|||.=....++...+|        +++++=+|.|++++.-+                               
T Consensus       107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~  186 (695)
T 2zwa_A          107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT  186 (695)
T ss_dssp             SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred             CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence            468999999999999999988755        67777788888764211                               


Q ss_pred             --CC------------------------CCe-------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCc
Q 035738          231 --PH------------------------PCM-------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTS  277 (333)
Q Consensus       231 --~~------------------------~gv-------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~  277 (333)
                        .+                        ++.       .+|.+++++.+.++|+.+.+ + |++.+++.|.+.+......
T Consensus       187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d~  264 (695)
T 2zwa_A          187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFEP  264 (695)
T ss_dssp             CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTSH
T ss_pred             CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCCh
Confidence              00                        010       67788899999999999985 5 6889999998877533221


Q ss_pred             cccccccchhhHHHhh---CC-CCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738          278 IESKSNSDSDVLMMIQ---SP-GGKERTRHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       278 ~~~~~~~~~d~~m~~~---~~-~g~~rt~~e~~~ll~~aGf~~~~~~~~  322 (333)
                          +...+--.+...   .. -....+.++..++|.+.||+.+.....
T Consensus       265 ----f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~  309 (695)
T 2zwa_A          265 ----FSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM  309 (695)
T ss_dssp             ----HHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred             ----HHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence                111110001000   00 013447999999999999988776644

>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}

Probab=93.26  E-value=0.04  Score=43.49  Aligned_cols=48  Identities=15%  Similarity=0.151  Sum_probs=42.1

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..++.++..|...   ++.|..+||+.+++    ++..+.+.++.|...|++.+.
T Consensus        52 ~~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~   99 (162)
T 3cjn_A           52 TAKMRALAILSAK---DGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRRE   99 (162)
T ss_dssp             HHHHHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHHC---CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEec
Confidence            3456677888775   48999999999999    999999999999999999986

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=93.19  E-value=0.094  Score=44.25  Aligned_cols=91  Identities=13%  Similarity=0.071  Sum_probs=59.3

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC---CC--------CCe----------
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP---PH--------PCM----------  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~~--------~gv----------  235 (333)
                      ..++.+.+. +....+|||+||++|.++...+....-.+++++|+ +.-.+.-+   .+        .++          
T Consensus        67 L~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~  145 (267)
T 3p8z_A           67 LQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC  145 (267)
T ss_dssp             HHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred             HHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence            455666664 77788999999999999998888776668999998 33222111   11        111          


Q ss_pred             -EEEccCC--------hh-HHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738          236 -WILHDWN--------DE-HCLKLLKNCYKSIPEDGKVIAVELMLP  271 (333)
Q Consensus       236 -~vLh~~~--------~~-~~~~lL~~~~~~L~pgG~l~i~e~~~~  271 (333)
                       -+|+|..        |+ ...++|.-+.+.|++ |.++| -.+.|
T Consensus       146 DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~-KVl~p  189 (267)
T 3p8z_A          146 DTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI-KVLNP  189 (267)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE-EESCC
T ss_pred             cEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE-EEccC
Confidence             6666653        11 123477777899998 66666 43333

>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*

Probab=93.17  E-value=0.038  Score=42.78  Aligned_cols=69  Identities=12%  Similarity=0.079  Sum_probs=51.1

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCcccccccccccccccc
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYVP  107 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~~  107 (333)
                      ..++.++..|...   ++.|..+||+.+++    ++..+.+.++.|...|++.+.... +.....+.+|+.+..+..
T Consensus        40 ~~~~~iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~  109 (147)
T 1z91_A           40 YPQYLALLLLWEH---ETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE  109 (147)
T ss_dssp             HHHHHHHHHHHHH---SEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred             HHHHHHHHHHHHC---CCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence            3456677777765   48999999999999    999999999999999999986311 111223666777665554

>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}

Probab=93.10  E-value=0.19  Score=39.39  Aligned_cols=47  Identities=11%  Similarity=0.124  Sum_probs=40.7

Q ss_pred             HHhChhhHhh-hcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIID-KAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~-~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .++.++..|. ..   ++.|..+||+.+++    ++..+.++++.|...|+|.+.
T Consensus        48 ~~~~iL~~L~~~~---~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~   95 (160)
T 3boq_A           48 AKFDAMAQLARNP---DGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKA   95 (160)
T ss_dssp             HHHHHHHHHHHCT---TCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC
T ss_pred             HHHHHHHHHHHcC---CCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee
Confidence            3556778884 33   58999999999999    999999999999999999986

>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0

Probab=93.09  E-value=0.044  Score=41.97  Aligned_cols=50  Identities=16%  Similarity=0.121  Sum_probs=41.8

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      .+..++..|...| .++.|..+||+.+++    ++..+.+.++.|...|++.+..
T Consensus        32 ~~~~vL~~l~~~~-~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~   81 (139)
T 3eco_A           32 EQGHTLGYLYAHQ-QDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYV   81 (139)
T ss_dssp             HHHHHHHHHHHST-TTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHhcC-CCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecC
Confidence            4555677777652 138999999999999    9999999999999999999873

>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}

Probab=93.08  E-value=0.031  Score=43.58  Aligned_cols=48  Identities=13%  Similarity=0.092  Sum_probs=41.2

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..+..++..|...   ++.|..+||+.+++    ++..+.++++.|...|+|.+.
T Consensus        41 ~~q~~iL~~l~~~---~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~   88 (149)
T 4hbl_A           41 YSQYLVMLTLWEE---NPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRE   88 (149)
T ss_dssp             HHHHHHHHHHHHS---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC-
T ss_pred             HHHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeC
Confidence            3455667777765   48999999999999    999999999999999999986

>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28

Probab=93.07  E-value=0.21  Score=38.83  Aligned_cols=47  Identities=17%  Similarity=0.275  Sum_probs=40.9

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      ++.++..|...   ++.|..+||+.+++    ++..+.+.++.|...|++.+..
T Consensus        39 ~~~iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~   85 (155)
T 1s3j_A           39 QLFVLASLKKH---GSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTH   85 (155)
T ss_dssp             HHHHHHHHHHH---SEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecC
Confidence            34467777765   48999999999999    9999999999999999999863

>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}

Probab=93.06  E-value=0.04  Score=43.47  Aligned_cols=46  Identities=9%  Similarity=0.045  Sum_probs=39.7

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      ..++..|...   ++.|..+||+.+++    ++..+.++++.|...|+|.+..
T Consensus        53 ~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~   98 (159)
T 3s2w_A           53 FPFLMRLYRE---DGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQR   98 (159)
T ss_dssp             HHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec
Confidence            3456666665   48999999999999    9999999999999999999873

>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}

Probab=92.98  E-value=0.037  Score=43.78  Aligned_cols=47  Identities=13%  Similarity=0.130  Sum_probs=41.3

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .++.++..|...   ++.|..+||+.+++    ++..+.++++.|...|+|.+.
T Consensus        54 ~q~~vL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~  100 (161)
T 3e6m_A           54 PKLRLLSSLSAY---GELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARS  100 (161)
T ss_dssp             HHHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred             HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEee
Confidence            345577778776   48999999999999    999999999999999999986

>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}

Probab=92.96  E-value=0.07  Score=39.88  Aligned_cols=47  Identities=19%  Similarity=0.263  Sum_probs=41.3

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      -.++.++..|.+    ++.|..+||+.+|+    ++..+.+.|+.|...|++...
T Consensus        32 ~~~~~il~~L~~----~~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv~~~   78 (119)
T 2lkp_A           32 PSRLMILTQLRN----GPLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLVVGD   78 (119)
T ss_dssp             HHHHHHHHHHHH----CCCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSEEEE
T ss_pred             HHHHHHHHHHHH----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            456677778877    37999999999999    999999999999999999875

>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=92.92  E-value=0.033  Score=42.79  Aligned_cols=48  Identities=13%  Similarity=0.153  Sum_probs=42.0

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..+..++..|...   ++.|..+||+.+++    ++..+.+.++.|...|++.+.
T Consensus        36 ~~~~~iL~~l~~~---~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~   83 (142)
T 2fbi_A           36 EQQWRVIRILRQQ---GEMESYQLANQACI----LRPSMTGVLARLERDGIVRRW   83 (142)
T ss_dssp             HHHHHHHHHHHHH---CSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEee
Confidence            3456677788776   48999999999999    999999999999999999986

>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0

Probab=92.90  E-value=0.048  Score=42.33  Aligned_cols=48  Identities=13%  Similarity=0.105  Sum_probs=34.4

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +..++..|...+ .++.|..+||+.+++    ++..+.+.++.|...|+|.+.
T Consensus        43 q~~vL~~l~~~~-~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~   90 (148)
T 3jw4_A           43 QGRMIGYIYENQ-ESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERR   90 (148)
T ss_dssp             HHHHHHHHHHHT-TTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC
T ss_pred             HHHHHHHHHhCC-CCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEee
Confidence            345666776642 148999999999999    999999999999999999986

>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28

Probab=92.82  E-value=0.056  Score=43.08  Aligned_cols=49  Identities=14%  Similarity=0.072  Sum_probs=41.7

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..++.++..|...+  +++|..+||+.+++    ++..+.++++.|...|+|.+.
T Consensus        53 ~~q~~vL~~L~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~  101 (166)
T 3deu_A           53 QTHWVTLHNIHQLP--PDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQ  101 (166)
T ss_dssp             HHHHHHHHHHHHSC--SSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC
T ss_pred             HHHHHHHHHHHHcC--CCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEee
Confidence            34566777777632  47999999999999    999999999999999999986

>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*

Probab=92.78  E-value=0.31  Score=42.25  Aligned_cols=80  Identities=14%  Similarity=0.154  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCC----CeEEEeechhHhhhCCCCCCeEEEccCChhHHHHHHHHHHHhCCCCcEEEE
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPY----IKGINFDLPHVIEHVPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDGKVIA  265 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~----~~~~~~D~~~~~~~a~~~~gv~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i  265 (333)
                      .+..|+=||||.|.+...|.+.+|+    ++.+.+|-.......+..++|.+...+-++..   +++.++.+....+++|
T Consensus        60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap~~~~l~~~~NV~li~~fvde~d---l~~l~~~~~~~~iLLI  136 (307)
T 3mag_A           60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTRFVDEEY---LRSIKKQLHPSKIILI  136 (307)
T ss_dssp             TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGTTCTTEEEEECCCCHHH---HHHHHHHHTTSCEEEE
T ss_pred             CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCcchhhhcCCCcEEEEeccCCHHH---HHHHHHhccCCCEEEE
Confidence            4569999999999999999988775    69999997332333344466655555445543   4455555566789999


Q ss_pred             EeeecCC
Q 035738          266 VELMLPE  272 (333)
Q Consensus       266 ~e~~~~~  272 (333)
                      .|....+
T Consensus       137 SDIRS~r  143 (307)
T 3mag_A          137 SDVRSKR  143 (307)
T ss_dssp             ECCCC--
T ss_pred             EEecCCC
Confidence            9986654

>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2

Probab=92.74  E-value=0.094  Score=40.74  Aligned_cols=46  Identities=22%  Similarity=0.444  Sum_probs=40.9

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +..|++.|.+.   ++.|..|||+++|+    ++..+.+.++.|...|++.+.
T Consensus         7 d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   52 (144)
T 2cfx_A            7 DLNIIEELKKD---SRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQY   52 (144)
T ss_dssp             HHHHHHHHHHC---SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence            45678888875   58999999999999    999999999999999999864

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=92.73  E-value=0.11  Score=45.50  Aligned_cols=34  Identities=15%  Similarity=-0.099  Sum_probs=27.6

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHC-----CCCeEEEeec
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKY-----PYIKGINFDL  222 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~-----p~~~~~~~D~  222 (333)
                      ..+.+|||+|+.+|..+..++...     ++.+++++|.
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~Dt  143 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADS  143 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEEC
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEEC
Confidence            456899999999999998876653     5778988884

>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}

Probab=92.67  E-value=0.2  Score=38.48  Aligned_cols=64  Identities=11%  Similarity=0.175  Sum_probs=48.3

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccc---cccccccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARR---LYSLNSVSKYYV  106 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~---~y~~t~~~~~l~  106 (333)
                      .++.++..|...|   + |..+||+.+++    ++..+.+.++.|...|++.+....  .+.   .+.+|+.+..+.
T Consensus        38 ~~~~iL~~l~~~~---~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~--~D~R~~~~~LT~~G~~~~  104 (144)
T 3f3x_A           38 LDFSILKATSEEP---R-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIRDS--KDRRIVIVEITPKGRQVL  104 (144)
T ss_dssp             HHHHHHHHHHHSC---E-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET--TEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHCC---C-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeccCC--CCCceEEEEECHHHHHHH
Confidence            4566788888763   5 99999999999    999999999999999999987310  111   366666665443

>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A

Probab=92.67  E-value=0.098  Score=40.90  Aligned_cols=47  Identities=15%  Similarity=0.141  Sum_probs=41.2

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .+..|+..|.+.   ++.|..|||+++|+    ++..+.+.++.|...|++.+.
T Consensus         8 ~~~~iL~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   54 (150)
T 2w25_A            8 IDRILVRELAAD---GRATLSELATRAGL----SVSAVQSRVRRLESRGVVQGY   54 (150)
T ss_dssp             HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            355677888765   58999999999999    999999999999999999764

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=92.65  E-value=0.094  Score=45.71  Aligned_cols=87  Identities=13%  Similarity=0.122  Sum_probs=56.4

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhC---CCC--------CC----------e
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHV---PPH--------PC----------M  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a---~~~--------~g----------v  235 (333)
                      ..++.+.+. +....+|||+||++|.++...+....-.+++++|+ ..-.+.-   +++        .+          +
T Consensus        83 L~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~  161 (321)
T 3lkz_A           83 LRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC  161 (321)
T ss_dssp             HHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence            445556544 67778999999999999998887776667899998 3311100   000        01          1


Q ss_pred             -EEEccCC--------hh-HHHHHHHHHHHhCCCC-cEEEE
Q 035738          236 -WILHDWN--------DE-HCLKLLKNCYKSIPED-GKVIA  265 (333)
Q Consensus       236 -~vLh~~~--------~~-~~~~lL~~~~~~L~pg-G~l~i  265 (333)
                       .++.|..        |+ ...++|.-+.+.|+++ |.++|
T Consensus       162 D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~  202 (321)
T 3lkz_A          162 DTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV  202 (321)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence             5666653        11 1235777778999888 77776

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=92.62  E-value=0.36  Score=41.27  Aligned_cols=33  Identities=24%  Similarity=0.201  Sum_probs=27.0

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTK  211 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~  211 (333)
                      ..++.+.. -+.+..+|||+||+.|.++...++.
T Consensus        62 L~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~   94 (269)
T 2px2_A           62 LRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATM   94 (269)
T ss_dssp             HHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTS
T ss_pred             HHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhh
Confidence            44565654 3788999999999999999998885

>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71

Probab=92.57  E-value=0.085  Score=38.01  Aligned_cols=36  Identities=22%  Similarity=0.277  Sum_probs=34.1

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      ++.+..+||+.+++    +...+.|.|..|...|+|.+..
T Consensus        35 ~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~   70 (96)
T 2obp_A           35 TPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSV   70 (96)
T ss_dssp             CCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeec
Confidence            68999999999999    9999999999999999999864

>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64

Probab=92.50  E-value=0.11  Score=43.04  Aligned_cols=69  Identities=14%  Similarity=0.228  Sum_probs=52.0

Q ss_pred             HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC---CCcccccccccccc
Q 035738           27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA---SGARRLYSLNSVSK  103 (333)
Q Consensus        27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~---~~~~~~y~~t~~~~  103 (333)
                      .+|..-.++.|+..|..    +|.|..+||+.+|+    ++..+.+.|+.|...|+|......   |...-.|++|+...
T Consensus        10 kaL~~~~rl~IL~~L~~----~~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~   81 (202)
T 2p4w_A           10 DVLGNETRRRILFLLTK----RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR   81 (202)
T ss_dssp             HHHHSHHHHHHHHHHHH----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred             HHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence            34445566777777865    59999999999999    999999999999999999986421   12234577766543

>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A

Probab=92.40  E-value=0.051  Score=38.98  Aligned_cols=52  Identities=13%  Similarity=0.209  Sum_probs=39.1

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738           49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV  106 (333)
Q Consensus        49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~  106 (333)
                      +.|..+||+.+++    ++..+.++++.|...|+|..+ .++ ....+.+|+.+..+.
T Consensus        30 ~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~-~d~-R~~~v~LT~~G~~~~   81 (95)
T 2qvo_A           30 DVYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECE-LEG-RTKIIRLTDKGQKIA   81 (95)
T ss_dssp             CEEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEE-EET-TEEEEEECHHHHHHH
T ss_pred             CcCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCC-CCC-CeEEEEEChhHHHHH
Confidence            4899999999999    999999999999999999433 100 112377777665443

>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*

Probab=92.40  E-value=0.13  Score=40.35  Aligned_cols=48  Identities=15%  Similarity=0.086  Sum_probs=39.4

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      +..++..|...+  ++.+..+||+.+++    ++..+.++++.|...|+|.+.+
T Consensus        33 q~~vL~~L~~~~--~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~   80 (151)
T 4aik_A           33 HWVTLYNINRLP--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHT   80 (151)
T ss_dssp             HHHHHHHHHHSC--TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHcC--CCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeec
Confidence            334556666543  36788999999999    9999999999999999999874

>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*

Probab=92.39  E-value=0.083  Score=41.30  Aligned_cols=47  Identities=23%  Similarity=0.316  Sum_probs=41.5

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .+..|++.|.+.   ++.|..|||+++|+    ++..+.+.++.|...|++.+.
T Consensus         4 ~~~~il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   50 (150)
T 2pn6_A            4 IDLRILKILQYN---AKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKGY   50 (150)
T ss_dssp             HHHHHHHHHTTC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEE
Confidence            356678888875   58999999999999    999999999999999999864

>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}

Probab=92.38  E-value=0.1  Score=40.92  Aligned_cols=70  Identities=13%  Similarity=0.083  Sum_probs=52.6

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhC-CCCCCCcccHHHHHHHHhcccceeeeccC------CCcccccccccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLT-TKNKDAPMMLDRILRLLASYSVVECSLDA------SGARRLYSLNSVSKYY  105 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~------~~~~~~y~~t~~~~~l  105 (333)
                      .++-|++.|..++ .+..|+++|++.++ +    ...-+++.|+.|+..|+|.+....      |..-..|.+|+.+..+
T Consensus        30 tR~~IL~~Ll~~p-~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~  104 (151)
T 3u1d_A           30 TRLDVLHQILAQP-DGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIAL  104 (151)
T ss_dssp             HHHHHHHHHHHST-TSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHH
T ss_pred             HHHHHHHHHHcCC-CCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHH
Confidence            5666777776642 24689999999999 8    999999999999999999976321      1112368999888755


Q ss_pred             cc
Q 035738          106 VP  107 (333)
Q Consensus       106 ~~  107 (333)
                      +.
T Consensus       105 l~  106 (151)
T 3u1d_A          105 LR  106 (151)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D

Probab=92.37  E-value=0.041  Score=41.82  Aligned_cols=48  Identities=13%  Similarity=0.205  Sum_probs=40.0

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +..++..|...+ .++.|..+||+.+++    ++..+.++++.|...|++.+.
T Consensus        39 q~~vL~~l~~~~-~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~   86 (127)
T 2frh_A           39 EFAVLTYISENK-EKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKK   86 (127)
T ss_dssp             HHHHHHHHHHTC-CSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCB
T ss_pred             HHHHHHHHHhcc-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence            445666676541 148999999999999    999999999999999999985

>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A

Probab=92.33  E-value=0.11  Score=41.14  Aligned_cols=47  Identities=15%  Similarity=0.332  Sum_probs=41.5

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .+..|++.|.+.   ++.|..|||+++|+    ++..+.+.++.|...|++.+.
T Consensus        11 ~~~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   57 (162)
T 2p5v_A           11 TDIKILQVLQEN---GRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQY   57 (162)
T ss_dssp             HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEeee
Confidence            345678888875   58999999999999    999999999999999999964

>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41

Probab=92.29  E-value=0.077  Score=39.09  Aligned_cols=47  Identities=21%  Similarity=0.330  Sum_probs=39.1

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ++.|+..|...|  .+.|..+||+.+|+    +...+++.|+.|...|++...
T Consensus        20 ~l~Il~~l~~~g--~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~~   66 (110)
T 1q1h_A           20 VIDVLRILLDKG--TEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR   66 (110)
T ss_dssp             THHHHHHHHHHC--SCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            445666664432  37999999999999    999999999999999999875

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=92.01  E-value=0.088  Score=52.46  Aligned_cols=42  Identities=14%  Similarity=0.188  Sum_probs=34.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCC---CCeEEEeec-hhHhhhC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYP---YIKGINFDL-PHVIEHV  229 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a  229 (333)
                      .....+|+|.|||+|.++..++++.+   ..+++++|+ +.+++.|
T Consensus       319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LA  364 (878)
T 3s1s_A          319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELL  364 (878)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHH
T ss_pred             CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHH
Confidence            34578999999999999999998876   457899999 7776655

>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A

Probab=91.92  E-value=0.094  Score=37.62  Aligned_cols=61  Identities=13%  Similarity=0.169  Sum_probs=48.3

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHH-HhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccccccc
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAA-QLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVP  107 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~-~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~  107 (333)
                      +..|+-.|+..   ++.|+.+||+ .+++    +...+.|=++.|...|+++.+     .++ +.+|+.+..++.
T Consensus        18 QfsiL~~L~~~---~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~~-----~~D-l~LT~~G~~~l~   79 (95)
T 1bja_A           18 TATILITIAKK---DFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEKS-----GDG-LIITGEAQDIIS   79 (95)
T ss_dssp             HHHHHHHHHHS---TTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEEE-----TTE-EEECHHHHHHHH
T ss_pred             HHHHHHHHHHC---CCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeecC-----CCC-eeeCHhHHHHHH
Confidence            34556677776   4999999999 9999    999999999999999999933     133 778877765553

>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61

Probab=91.85  E-value=0.25  Score=36.90  Aligned_cols=70  Identities=17%  Similarity=0.241  Sum_probs=52.2

Q ss_pred             HHHHHHhChhhHhhhcCCCCCCCHHHHHHHhC--------CCCCCCc-ccHHHHHHHHhcccceeeecc--CCCcccccc
Q 035738           29 MQAVYELGIFEIIDKAGPGAKLSASDIAAQLT--------TKNKDAP-MMLDRILRLLASYSVVECSLD--ASGARRLYS   97 (333)
Q Consensus        29 l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g--------~~~~~~~-~~l~~lL~~L~~~g~l~~~~~--~~~~~~~y~   97 (333)
                      +.-..++-|+..|.+    +|.+.-+|++.+.        +    ++ ..+.+.|+-|...|+|.....  +|+....|+
T Consensus        10 ~~~~~~~~IL~~L~~----~~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~   81 (118)
T 2esh_A           10 RGWWLASTILLLVAE----KPSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYR   81 (118)
T ss_dssp             HHHHHHHHHHHHHHH----SCBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEE
T ss_pred             ccchHHHHHHHHHHc----CCCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEE
Confidence            344456667777876    4899999999983        6    78 899999999999999988642  222234588


Q ss_pred             ccccccccc
Q 035738           98 LNSVSKYYV  106 (333)
Q Consensus        98 ~t~~~~~l~  106 (333)
                      +|+.+...+
T Consensus        82 LT~~G~~~l   90 (118)
T 2esh_A           82 ITPQGKLYL   90 (118)
T ss_dssp             ECHHHHHHH
T ss_pred             EChHHHHHH
Confidence            888776544

>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2

Probab=91.83  E-value=0.12  Score=40.39  Aligned_cols=46  Identities=15%  Similarity=0.293  Sum_probs=41.0

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +..|++.|.+.   ++.|..|||+++|+    ++..+.+.++.|...|++.+.
T Consensus        10 d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   55 (152)
T 2cg4_A           10 DRGILEALMGN---ARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITGA   55 (152)
T ss_dssp             HHHHHHHHHHC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcceE
Confidence            45678888875   58999999999999    999999999999999999964

>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B

Probab=91.82  E-value=0.085  Score=36.59  Aligned_cols=51  Identities=16%  Similarity=0.291  Sum_probs=40.0

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .+..|++.|.+.   ++.|+.||++.++.+.+.++.-+.++|+.|...|+|.+.
T Consensus        10 ~e~~vL~~L~~~---~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~   60 (82)
T 1p6r_A           10 AELEVMKVIWKH---SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH   60 (82)
T ss_dssp             HHHHHHHHHHTS---SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHcC---CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence            355677777764   589999999999730000688899999999999999987

>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A

Probab=91.77  E-value=0.09  Score=43.96  Aligned_cols=50  Identities=16%  Similarity=0.270  Sum_probs=43.0

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV  106 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~  106 (333)
                      ++.+..+||+.+++    ++..+.+.++.|...|++.+.     ....+.+|+.+..+.
T Consensus        19 ~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~-----~~~~i~LT~~G~~~~   68 (214)
T 3hrs_A           19 NKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKD-----KKAGYLLTDLGLKLV   68 (214)
T ss_dssp             SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTTEEEECHHHHHHH
T ss_pred             CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEe-----cCCCeEECHHHHHHH
Confidence            58999999999999    999999999999999999997     245677787775444

>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}

Probab=91.76  E-value=0.068  Score=38.84  Aligned_cols=50  Identities=16%  Similarity=0.171  Sum_probs=40.0

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +..|.+.|.+.   ++.|+.||++.++.+.+-.+.-+.++|+-|...|+|.+.
T Consensus        37 e~~VL~~L~~~---~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~   86 (99)
T 2k4b_A           37 ELIVMRVIWSL---GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE   86 (99)
T ss_dssp             CSHHHHHHHHH---SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred             HHHHHHHHHhC---CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence            45677788765   489999999999851111467899999999999999987

>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}

Probab=91.71  E-value=0.13  Score=40.20  Aligned_cols=47  Identities=15%  Similarity=0.304  Sum_probs=41.5

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .+..|++.|.+.   ++.|..|||+++|+    ++..+.+.++.|...|++.+.
T Consensus        10 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   56 (151)
T 2dbb_A           10 VDMQLVKILSEN---SRLTYRELADILNT----TRQRIARRIDKLKKLGIIRKF   56 (151)
T ss_dssp             HHHHHHHHHHHC---TTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            355688888875   58999999999999    999999999999999999864

>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}

Probab=91.62  E-value=0.11  Score=42.42  Aligned_cols=72  Identities=11%  Similarity=0.063  Sum_probs=52.6

Q ss_pred             HHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCcccccccccccccccc
Q 035738           31 AVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYVP  107 (333)
Q Consensus        31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~~  107 (333)
                      +..+..++..|...+ .+++|..+||+.+++    ++..+.++++.|...|+|.+.... +...-.+.+|+.+..+..
T Consensus        40 t~~q~~vL~~L~~~~-~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~  112 (189)
T 3nqo_A           40 TSRQYMTILSILHLP-EEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMV  112 (189)
T ss_dssp             CHHHHHHHHHHHHSC-GGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcc-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence            445666777777521 158999999999999    999999999999999999987421 111234677777765543

>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2

Probab=91.56  E-value=0.11  Score=40.66  Aligned_cols=47  Identities=17%  Similarity=0.195  Sum_probs=41.2

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .+..|++.|.+.   ++.|..+||+++|+    ++..+.+.++.|...|++.+.
T Consensus         8 ~~~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   54 (151)
T 2cyy_A            8 IDKKIIKILQND---GKAPLREISKITGL----AESTIHERIRKLRESGVIKKF   54 (151)
T ss_dssp             HHHHHHHHHHHC---TTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence            345678888875   58999999999999    999999999999999999864

>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36

Probab=91.48  E-value=0.16  Score=39.18  Aligned_cols=44  Identities=20%  Similarity=0.254  Sum_probs=37.2

Q ss_pred             hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ++..|....  ++.|..|||+.+|+    ++..+.+.|+.|...|++.+.
T Consensus        31 il~~L~~~~--~~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~   74 (152)
T 1ku9_A           31 VYAILYLSD--KPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV   74 (152)
T ss_dssp             HHHHHHHCS--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            455554211  48999999999999    999999999999999999986

>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50

Probab=91.46  E-value=0.15  Score=36.93  Aligned_cols=35  Identities=11%  Similarity=0.234  Sum_probs=33.5

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ++.|..|||+.+|+    +..-+.+.|+.|...|++.+.
T Consensus        35 ~~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~   69 (109)
T 2d1h_A           35 KPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT   69 (109)
T ss_dssp             SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence            48999999999999    999999999999999999986

>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}

Probab=91.44  E-value=0.16  Score=40.73  Aligned_cols=47  Identities=21%  Similarity=0.350  Sum_probs=41.4

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .+..|++.|.+.   ++.|..|||+++|+    ++..+.+.++.|...|++.+.
T Consensus        18 ~d~~IL~~L~~~---~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~~   64 (171)
T 2ia0_A           18 LDRNILRLLKKD---ARLTISELSEQLKK----PESTIHFRIKKLQERGVIERY   64 (171)
T ss_dssp             HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence            345678888875   58999999999999    999999999999999999864

>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}

Probab=91.43  E-value=0.17  Score=38.58  Aligned_cols=52  Identities=17%  Similarity=0.175  Sum_probs=44.2

Q ss_pred             HHHHHhChhhHhhhcCCCCCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           30 QAVYELGIFEIIDKAGPGAKLSASDIAAQL-----TTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        30 ~~a~~lglfd~L~~~~~~g~~t~~ela~~~-----g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      .+..+.-|++.|...+  ++.|++||.+.+     ++    +..-+.|.|+.|+..|++.+..
T Consensus         9 ~T~qR~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~~   65 (131)
T 2o03_A            9 STRQRAAISTLLETLD--DFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTLH   65 (131)
T ss_dssp             HHHHHHHHHHHHHHCC--SCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEEE
T ss_pred             CCHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEEE
Confidence            3556777889998643  589999999999     67    8889999999999999999874

>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28

Probab=91.38  E-value=0.077  Score=42.85  Aligned_cols=50  Identities=10%  Similarity=0.119  Sum_probs=41.2

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .++.++..|...++.++.|..+||+.+++    ++..+.+.++.|...|+|.+.
T Consensus        70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~  119 (181)
T 2fbk_A           70 AGWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERR  119 (181)
T ss_dssp             HHHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECC
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEec
Confidence            35557788877541113999999999999    999999999999999999986

>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A

Probab=91.36  E-value=0.19  Score=41.28  Aligned_cols=51  Identities=16%  Similarity=0.249  Sum_probs=44.1

Q ss_pred             HHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           28 AMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        28 ~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ++....+..|+..|.+    |+.|..|||+.+|+    ++..+.+.++.|...|++.+.
T Consensus        16 ~l~d~~~~~IL~~L~~----~~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~   66 (192)
T 1uly_A           16 VMLEDTRRKILKLLRN----KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK   66 (192)
T ss_dssp             HHHSHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HhCCHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            3344566778888884    48999999999999    999999999999999999976

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=91.18  E-value=0.087  Score=50.58  Aligned_cols=51  Identities=14%  Similarity=0.034  Sum_probs=35.2

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCC---------------CCeEEEeec-hhHhhhCC
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYP---------------YIKGINFDL-PHVIEHVP  230 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~  230 (333)
                      +..+++.+. .. ..+|+|.+||+|.++..+.+..+               ..+++|+|+ +.++..|+
T Consensus       234 v~lmv~ll~-p~-~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~  300 (544)
T 3khk_A          234 VTLIVEMLE-PY-KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAA  300 (544)
T ss_dssp             HHHHHHHHC-CC-SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHH
T ss_pred             HHHHHHHHh-cC-CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHH
Confidence            344444443 32 34999999999999988765432               567899999 77766554

>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*

Probab=91.15  E-value=0.085  Score=41.20  Aligned_cols=48  Identities=21%  Similarity=0.339  Sum_probs=33.8

Q ss_pred             hChhhHhhhcCC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           35 LGIFEIIDKAGP--GAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        35 lglfd~L~~~~~--~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..++..|...++  ++++|..+||+.+++    ++..+.++++.|...|+|++.
T Consensus        36 ~~vL~~l~~~~~~~~~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~   85 (148)
T 4fx0_A           36 FSTLAVISLSEGSAGIDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVM   85 (148)
T ss_dssp             HHHHHHHHC---------CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC--
T ss_pred             HHHHHHHHHhcCCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee
Confidence            344555654321  257999999999999    999999999999999999654

>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*

Probab=90.96  E-value=0.26  Score=38.31  Aligned_cols=62  Identities=18%  Similarity=0.146  Sum_probs=47.1

Q ss_pred             HHHHhChhhHhhhcCCCCCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccc
Q 035738           31 AVYELGIFEIIDKAGPGAKLSASDIAAQL-----TTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN   99 (333)
Q Consensus        31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~-----g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t   99 (333)
                      +..+.-|++.|...+  ++.|++||.+.+     ++    +..-+.|.|+.|+..|++.+...++ ...+|.++
T Consensus        21 T~qR~~Il~~L~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~-~~~~Y~~~   87 (145)
T 2fe3_A           21 TPQRHAILEYLVNSM--AHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKELTYGD-ASSRFDFV   87 (145)
T ss_dssp             CHHHHHHHHHHHHCS--SCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEECCTT-SCCEEEEC
T ss_pred             CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEEeeCC-CceEEECC
Confidence            445666889997643  589999999999     56    7888999999999999999874221 23456543

>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2

Probab=90.95  E-value=0.14  Score=39.43  Aligned_cols=46  Identities=22%  Similarity=0.341  Sum_probs=39.9

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +..|+..|...   ++.|..|||+++|+    ++..+.+.++.|...|++.+.
T Consensus         6 ~~~il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   51 (141)
T 1i1g_A            6 DKIILEILEKD---ARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEGY   51 (141)
T ss_dssp             HHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEecc
Confidence            44567778765   48999999999999    999999999999999999854

>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19

Probab=90.89  E-value=0.36  Score=32.76  Aligned_cols=52  Identities=12%  Similarity=0.067  Sum_probs=40.5

Q ss_pred             hhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccc
Q 035738           38 FEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN   99 (333)
Q Consensus        38 fd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t   99 (333)
                      ++.|..+   +..|+.+||.++|+    +..-+.|.|.-|...|.|...+   ..+..|..+
T Consensus        21 i~~L~~~---~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~~---~~PP~W~~~   72 (75)
T 1sfu_A           21 VLSLNTN---DYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMVP---SNPPKWFKN   72 (75)
T ss_dssp             HHTSCTT---CEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC---CSSCEEEEC
T ss_pred             HHhCCCC---cchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecCC---CCCCCccCC
Confidence            3355553   35999999999999    8888999999999999999873   135555544

>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}

Probab=90.85  E-value=0.15  Score=40.56  Aligned_cols=47  Identities=15%  Similarity=0.239  Sum_probs=41.8

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .+..|++.|.+.   +++|..+||+++|+    .+..+.+-++.|...|++.+.
T Consensus         4 ~d~~il~~L~~~---~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~~   50 (162)
T 3i4p_A            4 LDRKILRILQED---STLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRRR   50 (162)
T ss_dssp             HHHHHHHHHTTC---SCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHHC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeec
Confidence            356688889876   59999999999999    999999999999999999854

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=90.82  E-value=0.3  Score=44.04  Aligned_cols=39  Identities=13%  Similarity=0.164  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhC
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHV  229 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a  229 (333)
                      ...|||||.|.|.++..|+++...-+++++++ +..++..
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L   98 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFL   98 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHH
Confidence            57899999999999999999754457888887 5554433

>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28

Probab=90.73  E-value=0.086  Score=43.78  Aligned_cols=66  Identities=15%  Similarity=-0.030  Sum_probs=48.7

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCccccccccccccccc
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYV  106 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~  106 (333)
                      +..++..|...   ++.|..+||+.+++    ++..+.++++.|...|+|.+.... +...-.+.+|+.+..+.
T Consensus        50 q~~iL~~L~~~---~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~  116 (207)
T 2fxa_A           50 EHHILWIAYQL---NGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF  116 (207)
T ss_dssp             HHHHHHHHHHH---TSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred             HHHHHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHH
Confidence            45567777765   48999999999999    999999999999999999987311 00111456777776544

>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}

Probab=90.55  E-value=0.22  Score=40.84  Aligned_cols=35  Identities=20%  Similarity=0.077  Sum_probs=32.4

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      -|.|..|||+++|+    +...+.+.|+.|...|++.+.
T Consensus        23 ~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~~   57 (196)
T 3k2z_A           23 YPPSVREIARRFRI----TPRGALLHLIALEKKGYIERK   57 (196)
T ss_dssp             SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC
T ss_pred             CCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEec
Confidence            48999999999999    777899999999999999986

>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}

Probab=90.51  E-value=0.12  Score=38.80  Aligned_cols=75  Identities=9%  Similarity=0.131  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhC------CCCCCCcccHHHHHHHHhcccceeeecc---CCCcccc
Q 035738           25 LPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLT------TKNKDAPMMLDRILRLLASYSVVECSLD---ASGARRL   95 (333)
Q Consensus        25 ~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g------~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~~   95 (333)
                      ..+.+.-..++-|+..|.+    +|.+.-+|++.+.      +    ++..+.+.|+.|...|+++....   +|+....
T Consensus         7 ~~~l~~g~l~~~IL~lL~~----~p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~   78 (117)
T 3elk_A            7 RERILHGLITLYILKELVK----RPMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLTV   78 (117)
T ss_dssp             CCHHHHHHHHHHHHHHHHH----SCEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEE
T ss_pred             HHHHHhhHHHHHHHHHHHc----CCCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCceE
Confidence            3455566667778888887    4899999999886      7    78999999999999999997632   2223346


Q ss_pred             cccccccccccc
Q 035738           96 YSLNSVSKYYVP  107 (333)
Q Consensus        96 y~~t~~~~~l~~  107 (333)
                      |++|+.+...+.
T Consensus        79 Y~lT~~G~~~l~   90 (117)
T 3elk_A           79 YHITDAGKKFLC   90 (117)
T ss_dssp             EEECHHHHHHHH
T ss_pred             EEECHHHHHHHH
Confidence            889988875543

>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}

Probab=90.51  E-value=0.18  Score=32.00  Aligned_cols=47  Identities=13%  Similarity=0.201  Sum_probs=41.3

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +-.|++.+..+|  |-+.++.++++.|+    +..-+..+|+-|...|++.-+
T Consensus        12 e~~lL~yIr~sG--GildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~le   58 (59)
T 2xvc_A           12 ERELLDYIVNNG--GFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAVE   58 (59)
T ss_dssp             HHHHHHHHHHTT--SEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHcC--CEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeecc
Confidence            345778888776  89999999999999    999999999999999999854

>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}

Probab=90.49  E-value=0.11  Score=39.58  Aligned_cols=34  Identities=12%  Similarity=0.183  Sum_probs=32.3

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..|.++||+.+|+    ++.-+.+.++.|...|++.+.
T Consensus        51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~   84 (128)
T 2vn2_A           51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAIE   84 (128)
T ss_dssp             SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred             CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            3799999999999    999999999999999999986

>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}

Probab=90.48  E-value=0.27  Score=36.80  Aligned_cols=72  Identities=21%  Similarity=0.262  Sum_probs=52.9

Q ss_pred             HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHh------CCCCCCCcccHHHHHHHHhcccceeeecc---CCCcccccc
Q 035738           27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL------TTKNKDAPMMLDRILRLLASYSVVECSLD---ASGARRLYS   97 (333)
Q Consensus        27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~------g~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~~y~   97 (333)
                      +.++-.+++=|+..|.+    +|.+.-+|++.+      ++    ++..+...|+-|...|+|+....   +|+....|+
T Consensus         6 ~l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~   77 (117)
T 4esf_A            6 EMLKGSLEGCVLEIISR----RETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYS   77 (117)
T ss_dssp             HHHHHHHHHHHHHHHHH----SCBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEE
T ss_pred             HHHHChHHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEE
Confidence            34445556666677777    489999999998      67    89999999999999999998631   223344588


Q ss_pred             ccccccccc
Q 035738           98 LNSVSKYYV  106 (333)
Q Consensus        98 ~t~~~~~l~  106 (333)
                      +|+.+...+
T Consensus        78 LT~~G~~~l   86 (117)
T 4esf_A           78 LNEAGRQEL   86 (117)
T ss_dssp             ECHHHHHHH
T ss_pred             ECHHHHHHH
Confidence            888886544

>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*

Probab=90.40  E-value=0.25  Score=36.82  Aligned_cols=73  Identities=14%  Similarity=0.233  Sum_probs=54.1

Q ss_pred             HHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHh--------CCCCCCCcccHHHHHHHHhcccceeeecc---CCCccc
Q 035738           26 PMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL--------TTKNKDAPMMLDRILRLLASYSVVECSLD---ASGARR   94 (333)
Q Consensus        26 ~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~--------g~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~   94 (333)
                      .+.++-..++=|...|.+    +|.+.-+|.+.+        ++    ++..+.+.|+-|...|+++....   +|+...
T Consensus         6 ~~~~~g~l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk   77 (116)
T 3f8b_A            6 KEMLRAQTNVILLNVLKQ----GDNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRK   77 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHH----CCBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEE
T ss_pred             HHHHhchHHHHHHHHHHh----CCCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCce
Confidence            445555566667778887    489999999988        56    89999999999999999997631   233344


Q ss_pred             cccccccccccc
Q 035738           95 LYSLNSVSKYYV  106 (333)
Q Consensus        95 ~y~~t~~~~~l~  106 (333)
                      .|++|+.+...+
T Consensus        78 ~Y~LT~~G~~~l   89 (116)
T 3f8b_A           78 YYRLTEIGHENM   89 (116)
T ss_dssp             EEEECHHHHHHH
T ss_pred             EEEECHHHHHHH
Confidence            588888876544

>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A

Probab=90.31  E-value=0.052  Score=46.00  Aligned_cols=69  Identities=6%  Similarity=0.152  Sum_probs=51.9

Q ss_pred             HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCC----Cccccccccccc
Q 035738           27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDAS----GARRLYSLNSVS  102 (333)
Q Consensus        27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~----~~~~~y~~t~~~  102 (333)
                      .+|.--.++.|+..|..    +|.|..+||+.+|+    .+..+.+.|+.|...|++......|    .....|++++.+
T Consensus         7 kaL~~~~R~~IL~~L~~----g~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~   78 (232)
T 2qlz_A            7 YILGNKVRRDLLSHLTC----MECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAK   78 (232)
T ss_dssp             HHHTSHHHHHHHHHHTT----TTTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCE
T ss_pred             HHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccch
Confidence            34455567778888886    59999999999999    9999999999999999999832211    002347777665


Q ss_pred             c
Q 035738          103 K  103 (333)
Q Consensus       103 ~  103 (333)
                      .
T Consensus        79 ~   79 (232)
T 2qlz_A           79 S   79 (232)
T ss_dssp             E
T ss_pred             h
Confidence            4

>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}

Probab=90.13  E-value=0.12  Score=41.10  Aligned_cols=67  Identities=12%  Similarity=0.155  Sum_probs=45.8

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccc---cccccccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARR---LYSLNSVSKYYV  106 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~---~y~~t~~~~~l~  106 (333)
                      .++.++..|...| ++++|..+||+.+++    ++..+.++++.|...|+|.+...  +.+.   .+.+|+.+..+.
T Consensus        47 ~q~~vL~~l~~~~-~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~--~~DrR~~~l~LT~~G~~~~  116 (168)
T 3u2r_A           47 QQYNTLRLLRSVH-PEGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTRK--PENRRVVEVALTDAGLKLL  116 (168)
T ss_dssp             HHHHHHHHHHHHT-TSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEE--TTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHhcC-CCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecCC--CCCCCeeEeEECHHHHHHH
Confidence            4555677777642 148999999999999    99999999999999999998631  1122   355565555443

>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}

Probab=90.11  E-value=0.55  Score=29.76  Aligned_cols=43  Identities=19%  Similarity=0.172  Sum_probs=38.4

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS  100 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~  100 (333)
                      .++|+.|+|+..|.    +....+.-|+.|.+.|-+++.      ..+|++.|
T Consensus        17 QGMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LRKR------sSRYrlkp   59 (68)
T 3i71_A           17 QGMTAGEVAAHFGW----PLEKARNALEQLFSAGTLRKR------SSRYRLKP   59 (68)
T ss_dssp             TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------CCEEEECC
T ss_pred             ccccHHHHHHHhCC----cHHHHHHHHHHHHhcchhhhh------ccccccCc
Confidence            37999999999999    889999999999999999986      67888765

>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1

Probab=89.93  E-value=0.33  Score=39.52  Aligned_cols=58  Identities=17%  Similarity=0.246  Sum_probs=46.2

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccc-eeeeccCCCcccccccccc
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSV-VECSLDASGARRLYSLNSV  101 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~-l~~~~~~~~~~~~y~~t~~  101 (333)
                      --...|.+.|.+.+  ++.|..|||+++|+    ..+-++|-++.|...|+ +...      .+.|.+++.
T Consensus        21 ~R~~~Il~~L~~~~--~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~~------~~Gy~l~~~   79 (187)
T 1j5y_A           21 ERLKSIVRILERSK--EPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVAT------PRGYVLAGG   79 (187)
T ss_dssp             HHHHHHHHHHHHCS--SCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEEE------TTEEECCTT
T ss_pred             HHHHHHHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE------CCEEEECCc
Confidence            44567888887532  47999999999999    99999999999999999 7654      456776643

>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}

Probab=89.27  E-value=0.14  Score=41.54  Aligned_cols=69  Identities=19%  Similarity=0.266  Sum_probs=52.2

Q ss_pred             HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhC-CCCCCCcccHHHHHHHHhcccceeeecc---CCCccccccccccc
Q 035738           27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLT-TKNKDAPMMLDRILRLLASYSVVECSLD---ASGARRLYSLNSVS  102 (333)
Q Consensus        27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g-~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~~y~~t~~~  102 (333)
                      .+|.--.++.|+..|.+    ++.|+.+|++.++ +    +...+.+.|+.|...|+|+...+   .|.....|++++.+
T Consensus        18 ~~La~P~Rl~il~~L~~----~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~   89 (182)
T 4g6q_A           18 DLLHHPLRWRITQLLIG----RSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQA   89 (182)
T ss_dssp             HHTTSHHHHHHHHHTTT----SCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTT
T ss_pred             HHhCCHHHHHHHHHHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEecccc
Confidence            44555678899999987    5999999999996 8    88889999999999999986532   11123457766554


Q ss_pred             c
Q 035738          103 K  103 (333)
Q Consensus       103 ~  103 (333)
                      .
T Consensus        90 ~   90 (182)
T 4g6q_A           90 G   90 (182)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=89.13  E-value=0.25  Score=47.35  Aligned_cols=41  Identities=15%  Similarity=0.007  Sum_probs=33.6

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHC---CCCeEEEeec-hhHhhhCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKY---PYIKGINFDL-PHVIEHVP  230 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~  230 (333)
                      ...+|+|.+||+|.++..+.+..   +..+++|+|+ +.+...|+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~  265 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLAR  265 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHH
Confidence            56799999999999999998874   3678999999 77665553

>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}

Probab=89.07  E-value=0.1  Score=40.59  Aligned_cols=36  Identities=19%  Similarity=0.237  Sum_probs=34.0

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      |++|..+||+.+++    ++..+.++++-|...|+|.+.+
T Consensus        50 ~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~   85 (147)
T 4b8x_A           50 GELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRP   85 (147)
T ss_dssp             GEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEee
Confidence            58999999999999    9999999999999999999874

>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85

Probab=88.67  E-value=0.28  Score=34.93  Aligned_cols=48  Identities=21%  Similarity=0.344  Sum_probs=40.4

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ++.|+..|.+.|. .+++..||++++++    +..-+.+.|+.|...|++.+.
T Consensus        22 q~~Vl~~I~~~g~-~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr~   69 (91)
T 2dk5_A           22 EKLVYQIIEDAGN-KGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV   69 (91)
T ss_dssp             HHHHHHHHHHHCT-TCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHcCC-CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence            4557777776421 27999999999999    999999999999999999965

>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0

Probab=88.47  E-value=0.079  Score=39.08  Aligned_cols=68  Identities=19%  Similarity=0.230  Sum_probs=49.1

Q ss_pred             HHHHhChhhHhhhcCCCCCCCHHHHHHHh----CCCCCCCcccHHHHHHHHhcccceeeecc--CCCccccccccccccc
Q 035738           31 AVYELGIFEIIDKAGPGAKLSASDIAAQL----TTKNKDAPMMLDRILRLLASYSVVECSLD--ASGARRLYSLNSVSKY  104 (333)
Q Consensus        31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~----g~~~~~~~~~l~~lL~~L~~~g~l~~~~~--~~~~~~~y~~t~~~~~  104 (333)
                      -..++-|+..|.+    +|.+.-+|++.+    ++    ++..+.+.|+.|...|+|.....  +|.....|++|+.+..
T Consensus         8 g~l~~~IL~~L~~----~~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~   79 (108)
T 3l7w_A            8 LLIEYLILAIVSK----HDSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEK   79 (108)
T ss_dssp             HHHHHHHHHHHHH----SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHH
T ss_pred             HHHHHHHHHHHHc----CCCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHH
Confidence            3455566777776    488888888875    78    89999999999999999998632  1211234788887765


Q ss_pred             cc
Q 035738          105 YV  106 (333)
Q Consensus       105 l~  106 (333)
                      .+
T Consensus        80 ~l   81 (108)
T 3l7w_A           80 HL   81 (108)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}

Probab=88.41  E-value=0.43  Score=36.76  Aligned_cols=67  Identities=16%  Similarity=0.139  Sum_probs=47.8

Q ss_pred             HHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCC-CcccHHHHHHHHhcccceeeeccCCCcccccccc
Q 035738           30 QAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKD-APMMLDRILRLLASYSVVECSLDASGARRLYSLN   99 (333)
Q Consensus        30 ~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~-~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t   99 (333)
                      .+..+.-|++.|.+.+  ++.|++||.+.+.-+.|. +..-+.|.|+.|+..|++.+...++ ...+|...
T Consensus        12 ~T~qR~~Il~~L~~~~--~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~-g~~~Y~~~   79 (139)
T 3mwm_A           12 ATRQRAAVSAALQEVE--EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAE-GESVYRRC   79 (139)
T ss_dssp             HHHHHHHHHHHHTTCS--SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTT-SCEEEECC
T ss_pred             cCHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCC-CceEEEEC
Confidence            3556777888888653  589999999998321111 7788999999999999999874211 23456553

>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}

Probab=88.04  E-value=0.52  Score=36.83  Aligned_cols=61  Identities=18%  Similarity=0.312  Sum_probs=47.7

Q ss_pred             HHHHhChhhHhhhcCCCCCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccc
Q 035738           31 AVYELGIFEIIDKAGPGAKLSASDIAAQL-----TTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSL   98 (333)
Q Consensus        31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~-----g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~   98 (333)
                      +..+.-|++.|...+  ++.|++||.+.+     ++    +..-+.|.|+.|+..|++.+...++ ...+|..
T Consensus        26 T~qR~~IL~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~-~~~~Y~~   91 (150)
T 2xig_A           26 SKQREEVVSVLYRSG--THLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVLETSK-SGRRYEI   91 (150)
T ss_dssp             HHHHHHHHHHHHHCS--SCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEETT-TEEEEEE
T ss_pred             CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEEEeCC-CceEEEe
Confidence            666777899998753  589999999999     56    8888999999999999999874211 1344654

>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6

Probab=87.97  E-value=0.35  Score=34.95  Aligned_cols=52  Identities=25%  Similarity=0.273  Sum_probs=40.3

Q ss_pred             HHHHHHHhChhh-HhhhcCCCCCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           28 AMQAVYELGIFE-IIDKAGPGAKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        28 ~l~~a~~lglfd-~L~~~~~~g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .++-.++..|.+ .+..+   ..+ |..+||+.+|+    ...-+++-|+.|...|++...
T Consensus        15 ~l~~~i~~~I~~~~l~~g---~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~~   68 (102)
T 1v4r_A           15 DVATHFRTLIKSGELAPG---DTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSSR   68 (102)
T ss_dssp             HHHHHHHHHTTTTSCCTT---SBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEEE
T ss_pred             HHHHHHHHHHHhCCCCCc---CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence            444445555555 33332   355 99999999999    999999999999999999976

>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A

Probab=87.92  E-value=0.21  Score=37.34  Aligned_cols=46  Identities=17%  Similarity=0.242  Sum_probs=39.0

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhC----CCCCCCcccHHHHHHHHhcccceeee
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLT----TKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g----~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +..++..|...   ++.|..+||+.++    +    .+..+.++|+.|...|+|.+.
T Consensus        12 ~~~vL~~l~~~---~~~t~~ela~~l~~~~~~----s~~tv~~~l~~L~~~Glv~r~   61 (123)
T 1okr_A           12 EWEVMNIIWMK---KYASANNIIEEIQMQKDW----SPKTIRTLITRLYKKGFIDRK   61 (123)
T ss_dssp             HHHHHHHHHHH---SSEEHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHhC---CCcCHHHHHHHHhccCCC----cHhhHHHHHHHHHHCCCeEEE
Confidence            34556666654   4899999999999    6    689999999999999999987

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=87.53  E-value=0.6  Score=44.58  Aligned_cols=52  Identities=12%  Similarity=-0.050  Sum_probs=35.5

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-------------CCCeEEEeec-hhHhhhCC
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-------------PYIKGINFDL-PHVIEHVP  230 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~  230 (333)
                      ...+++.+. .....+|+|-+||+|.++....+..             ....+.|+|+ +.+...|+
T Consensus       206 v~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~  271 (530)
T 3ufb_A          206 VRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQ  271 (530)
T ss_dssp             HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHH
T ss_pred             HHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHH
Confidence            344444444 5566799999999999998776532             2356899998 66655544

>1vpt_A VP39; RNA CAP, poly(A) polymerase, methyltransferase; HET: SAM; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1vp3_A*

Probab=87.38  E-value=1.3  Score=38.89  Aligned_cols=79  Identities=14%  Similarity=0.153  Sum_probs=56.5

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCC----CeEEEeechhHhhhCCCCCCeEEEccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPY----IKGINFDLPHVIEHVPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAV  266 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~----~~~~~~D~~~~~~~a~~~~gv~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~  266 (333)
                      +..||=+|++.|.+...|.+.||+    ++++.+|-.......+..+++.+...+-++++   ++..+..+.....|+|.
T Consensus        76 g~~VVYaGsAPG~HI~fL~~lF~~l~~~lkwvLiDp~~f~~~Le~~~ni~li~~ffde~~---i~~l~~~~~~~~vLfIS  152 (348)
T 1vpt_A           76 GATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTRFVDEEY---LRSIKKQLHPSKIILIS  152 (348)
T ss_dssp             TCEEEEESCSSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGTTCTTEEEEECCCCHHH---HHHHHHHHTTSCEEEEE
T ss_pred             CCeEEEeCcCCcchHHHHHHHhhhcCCceEEEEECCCchhhhhcCCCcEEeehhhcCHHH---HHHHHHHhcCCCEEEEE
Confidence            359999999999999999988775    89999998444455555567766666666653   44444555566888888


Q ss_pred             eeecCC
Q 035738          267 ELMLPE  272 (333)
Q Consensus       267 e~~~~~  272 (333)
                      |....+
T Consensus       153 DIRS~~  158 (348)
T 1vpt_A          153 DVASAA  158 (348)
T ss_dssp             CCCC--
T ss_pred             ecccCC
Confidence            875544

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=87.30  E-value=0.62  Score=39.93  Aligned_cols=50  Identities=14%  Similarity=0.121  Sum_probs=37.6

Q ss_pred             hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC
Q 035738          177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP  230 (333)
Q Consensus       177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~  230 (333)
                      ....++..+  ......|||..||+|.++.+..+..  .+++++|+ |..++.++
T Consensus       201 l~~~~i~~~--~~~~~~vlD~f~GsGtt~~~a~~~g--r~~ig~e~~~~~~~~~~  251 (260)
T 1g60_A          201 LIERIIRAS--SNPNDLVLDCFMGSGTTAIVAKKLG--RNFIGCDMNAEYVNQAN  251 (260)
T ss_dssp             HHHHHHHHH--CCTTCEEEESSCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHh--CCCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHH
Confidence            344555543  3466799999999999999988764  57999999 77776654

>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0

Probab=86.71  E-value=0.43  Score=35.59  Aligned_cols=72  Identities=18%  Similarity=0.176  Sum_probs=52.9

Q ss_pred             HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHh------CCCCCCCcccHHHHHHHHhcccceeeecc---CCCcccccc
Q 035738           27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL------TTKNKDAPMMLDRILRLLASYSVVECSLD---ASGARRLYS   97 (333)
Q Consensus        27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~------g~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~~y~   97 (333)
                      +.++-..++=|+..|.+    +|.+.-+|++.+      ++    ++..+...|+-|...|+++....   +|+....|+
T Consensus         8 ~l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~   79 (116)
T 3hhh_A            8 ELLKGILEGLVLAIIQR----KETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYR   79 (116)
T ss_dssp             HHHTTHHHHHHHHHHHH----SCBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEE
T ss_pred             HHHhhhHHHHHHHHHhc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEE
Confidence            44444455667777777    489999999998      57    89999999999999999997631   222334588


Q ss_pred             ccccccccc
Q 035738           98 LNSVSKYYV  106 (333)
Q Consensus        98 ~t~~~~~l~  106 (333)
                      +|+.+...+
T Consensus        80 lT~~G~~~l   88 (116)
T 3hhh_A           80 LTSSGEAEL   88 (116)
T ss_dssp             ECHHHHHHH
T ss_pred             ECHHHHHHH
Confidence            888886544

>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A

Probab=86.54  E-value=0.78  Score=30.33  Aligned_cols=47  Identities=19%  Similarity=0.224  Sum_probs=39.6

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +-.|++.|..+   ||.++-.||+++|++   ...-+.+-|..|...|+|..+
T Consensus        12 ee~I~~fL~~~---Gp~~AL~IAK~LGlk---tAK~VNp~LY~m~~~~lL~~D   58 (72)
T 3eyi_A           12 EEDIYRFLKDN---GPQRALVIAQALGMR---TAKDVNRDLYRMKSRHLLDMD   58 (72)
T ss_dssp             HHHHHHHHHHH---CSEEHHHHHHHTTCC---SGGGTHHHHHHHHHTTSEEEC
T ss_pred             HHHHHHHHHHc---CCchHHHHHHHhCcc---hhhhcCHHHHHHHHccCcCCC
Confidence            45688899987   599999999999993   333489999999999999775

>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66

Probab=86.36  E-value=0.38  Score=34.94  Aligned_cols=35  Identities=31%  Similarity=0.335  Sum_probs=32.5

Q ss_pred             CCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           48 AKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        48 g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +.+ |..+||+.+|+    ...-+++-|+.|...|++...
T Consensus        41 ~~lps~~eLa~~lgV----Sr~tVr~al~~L~~~GlI~~~   76 (102)
T 2b0l_A           41 EGLLVASKIADRVGI----TRSVIVNALRKLESAGVIESR   76 (102)
T ss_dssp             EEEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             CcCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            355 99999999999    999999999999999999986

>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61

Probab=86.31  E-value=0.3  Score=38.03  Aligned_cols=70  Identities=10%  Similarity=0.152  Sum_probs=50.9

Q ss_pred             HHHHHHhChhhHhhhcCCCCCCCHHHHHHHh--------CCCCCCCcccHHHHHHHHhcccceeeecc---CCCcccccc
Q 035738           29 MQAVYELGIFEIIDKAGPGAKLSASDIAAQL--------TTKNKDAPMMLDRILRLLASYSVVECSLD---ASGARRLYS   97 (333)
Q Consensus        29 l~~a~~lglfd~L~~~~~~g~~t~~ela~~~--------g~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~~y~   97 (333)
                      +.--.++-|+..|.+    +|.+.-||++.+        ++    ++..+.+.|+-|...|+|.....   +++....|+
T Consensus        38 ~~g~~~~~IL~~L~~----~~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~  109 (145)
T 1xma_A           38 IRGYVDTIILSLLIE----GDSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYR  109 (145)
T ss_dssp             GGGTHHHHHHHHHHH----CCEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEE
T ss_pred             hcCcHHHHHHHHHHh----CCCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEE
Confidence            334456667777776    489999998888        57    89999999999999999988632   122234588


Q ss_pred             ccccccccc
Q 035738           98 LNSVSKYYV  106 (333)
Q Consensus        98 ~t~~~~~l~  106 (333)
                      +|+.+..++
T Consensus       110 LT~~G~~~l  118 (145)
T 1xma_A          110 ITPEGIKYY  118 (145)
T ss_dssp             ECHHHHHHH
T ss_pred             ECHHHHHHH
Confidence            888776443

>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}

Probab=85.81  E-value=0.28  Score=37.71  Aligned_cols=34  Identities=6%  Similarity=0.035  Sum_probs=32.4

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..|.++||+++|+    ++.-+.+.|+.|...|++...
T Consensus        51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~   84 (135)
T 2v79_A           51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIE   84 (135)
T ss_dssp             SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred             CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            5799999999999    999999999999999999985

>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2

Probab=85.67  E-value=0.36  Score=40.63  Aligned_cols=53  Identities=15%  Similarity=0.161  Sum_probs=41.9

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV  106 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~  106 (333)
                      ++.|..++|+++++    ++..+.+.++.|...|++.+...  +....+.+|+.+..+.
T Consensus        26 ~~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~~--~R~~~v~LT~~G~~l~   78 (230)
T 3cta_A           26 AYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVT--KRGQILNITEKGLDVL   78 (230)
T ss_dssp             EECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEE--TTEEEEEECHHHHHHH
T ss_pred             CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEEc--CCeEEEEECHHHHHHH
Confidence            36899999999999    99999999999999999998621  0134566776665544

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=85.51  E-value=0.36  Score=43.65  Aligned_cols=39  Identities=18%  Similarity=0.066  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHh
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVI  226 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~  226 (333)
                      ..++.+|||+-+|.|.=+..++...++-.++..|+ +.-+
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~  185 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRI  185 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHH
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHH
Confidence            66788999999999999999988777667888898 4443

>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*

Probab=85.43  E-value=0.78  Score=33.19  Aligned_cols=41  Identities=15%  Similarity=0.156  Sum_probs=34.7

Q ss_pred             HHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhc
Q 035738           31 AVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLAS   79 (333)
Q Consensus        31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~   79 (333)
                      .+.++||+..|..    |+.|..|||+.+|+    ....+.|.-++|..
T Consensus        44 l~~R~~l~~~L~~----ge~TQREIA~~lGi----S~stISRi~r~L~~   84 (101)
T 1jhg_A           44 LGTRVRIIEELLR----GEMSQRELKNELGA----GIATITRGSNSLKA   84 (101)
T ss_dssp             HHHHHHHHHHHHH----CCSCHHHHHHHHCC----CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc----CCcCHHHHHHHHCC----ChhhhhHHHHHHHH
Confidence            4566899999988    47999999999999    89888888777643

>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39

Probab=85.38  E-value=0.54  Score=36.03  Aligned_cols=48  Identities=15%  Similarity=0.111  Sum_probs=40.3

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhC----CCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLT----TKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g----~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .+..|+..|.+..  ++.|..||++.++    +    ++.-+.++|+-|...|+|.+.
T Consensus        10 ~e~~vL~~L~~~~--~~~t~~el~~~l~~~~~~----~~~Tvt~~l~rLe~kGlv~r~   61 (138)
T 2g9w_A           10 LERAVMDHLWSRT--EPQTVRQVHEALSARRDL----AYTTVMAVLQRLAKKNLVLQI   61 (138)
T ss_dssp             HHHHHHHHHHTCS--SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHhcC--CCCCHHHHHHHHhccCCC----CHHHHHHHHHHHHHCCCEEEE
Confidence            4556677777621  4899999999998    6    788999999999999999987

>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A

Probab=85.16  E-value=0.44  Score=35.61  Aligned_cols=51  Identities=14%  Similarity=0.211  Sum_probs=40.7

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .+..+...|.+.   ++.|..|||+.++.+.+-++.-+.++|+-|...|+|.+.
T Consensus        11 ~q~~vL~~L~~~---~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~   61 (126)
T 1sd4_A           11 AEWDVMNIIWDK---KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY   61 (126)
T ss_dssp             HHHHHHHHHHHS---SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHhc---CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence            455667777775   489999999999741111688899999999999999987

>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42

Probab=84.74  E-value=0.89  Score=34.76  Aligned_cols=62  Identities=18%  Similarity=0.258  Sum_probs=45.6

Q ss_pred             HHHHhChhhHhhhcCCCCCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccc
Q 035738           31 AVYELGIFEIIDKAGPGAKLSASDIAAQL-----TTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSL   98 (333)
Q Consensus        31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~-----g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~   98 (333)
                      +..+.-|++.|.+.+ .++.|++||.+.+     ++    +..-+.|.|+.|+..|++.+...++ ...+|.+
T Consensus        17 T~qR~~Il~~L~~~~-~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~-~~~~Y~~   83 (136)
T 1mzb_A           17 TLPRVKILQMLDSAE-QRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRHNFDG-GHAVFEL   83 (136)
T ss_dssp             CHHHHHHHHHHHCC--CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEECSSS-SSCEEEE
T ss_pred             CHHHHHHHHHHHhCC-CCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEEEeCC-CceEEEe
Confidence            344566888887531 0489999999999     56    7888999999999999999874211 1345654

>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A

Probab=83.97  E-value=0.41  Score=40.27  Aligned_cols=47  Identities=11%  Similarity=0.121  Sum_probs=39.0

Q ss_pred             CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738           51 SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV  106 (333)
Q Consensus        51 t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~  106 (333)
                      +..+||+.+++    ++..+.+.|+.|...|++.+.+     +..+.+|+.+..+.
T Consensus        26 ~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~~-----~~~v~LT~~G~~~~   72 (230)
T 1fx7_A           26 LRARIAERLDQ----SGPTVSQTVSRMERDGLLRVAG-----DRHLELTEKGRALA   72 (230)
T ss_dssp             CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT-----TSCEEECHHHHHHH
T ss_pred             cHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC-----CccEEECHHHHHHH
Confidence            44999999999    9999999999999999999972     45677777765443

>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}

Probab=83.43  E-value=0.63  Score=34.86  Aligned_cols=46  Identities=13%  Similarity=0.055  Sum_probs=37.8

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ....|.+.+..    .|.++.+||+.+|+    ++..++.+|+.|+..|.+...
T Consensus         8 l~~~i~~~~~~----~p~~~~~la~~~~~----~~~~~~~~l~~l~~~G~l~~i   53 (121)
T 2pjp_A            8 IWQKAEPLFGD----EPWWVRDLAKETGT----DEQAMRLTLRQAAQQGIITAI   53 (121)
T ss_dssp             HHHHHGGGCSS----SCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHh----CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence            34445555543    27799999999999    999999999999999998886

>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=83.41  E-value=0.67  Score=42.11  Aligned_cols=70  Identities=14%  Similarity=0.184  Sum_probs=49.0

Q ss_pred             HHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeecc----CCCcccccccccc
Q 035738           26 PMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLD----ASGARRLYSLNSV  101 (333)
Q Consensus        26 ~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~----~~~~~~~y~~t~~  101 (333)
                      +++++...+..|++.|. .   +++|..|||+.+|+    .+.-+.++++.|...|++.+...    .|-....|.+++.
T Consensus        14 ~~~~~~~~~~~il~~l~-~---~~~sr~~la~~~gl----s~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~~l~~~~~   85 (380)
T 2hoe_A           14 PKSVRAENISRILKRIM-K---SPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKISPN   85 (380)
T ss_dssp             --------CCCSHHHHH-H---SCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEECCC----CCCEEEEECGG
T ss_pred             chhHHHHHHHHHHHHHH-c---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeecCCCCCCCCCceEEEEccC
Confidence            55677777888999999 7   59999999999999    99999999999999999998632    1112333666665


Q ss_pred             cc
Q 035738          102 SK  103 (333)
Q Consensus       102 ~~  103 (333)
                      ..
T Consensus        86 ~~   87 (380)
T 2hoe_A           86 CA   87 (380)
T ss_dssp             GC
T ss_pred             CC
Confidence            43

>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28

Probab=83.35  E-value=0.5  Score=40.38  Aligned_cols=50  Identities=16%  Similarity=0.081  Sum_probs=41.1

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      .+..++..|...++ ++.|..|||+.+++    ++..+.++++-|...|+|.+..
T Consensus       159 ~q~~vL~~L~~~~~-~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~  208 (250)
T 1p4x_A          159 VEFTILAIITSQNK-NIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKER  208 (250)
T ss_dssp             HHHHHHHHHHTTTT-CCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEE
T ss_pred             HHHHHHHHHHhCCC-CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeC
Confidence            34456677766431 25999999999999    9999999999999999999974

>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}

Probab=83.13  E-value=0.92  Score=33.46  Aligned_cols=35  Identities=17%  Similarity=0.301  Sum_probs=32.3

Q ss_pred             CCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           48 AKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        48 g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..+ |..+||+.+|+    +..-+++-|+.|...|++...
T Consensus        31 ~~lPs~~~La~~~~v----Sr~tvr~al~~L~~~Gli~~~   66 (113)
T 3tqn_A           31 EMIPSIRKISTEYQI----NPLTVSKAYQSLLDDNVIEKR   66 (113)
T ss_dssp             CEECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             CcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence            355 89999999999    999999999999999999986

>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2

Probab=83.10  E-value=0.61  Score=38.28  Aligned_cols=46  Identities=20%  Similarity=0.218  Sum_probs=40.2

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccc
Q 035738           49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKY  104 (333)
Q Consensus        49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~  104 (333)
                      |.+..+||+.+|+    .++-++..++-|...|+++..      .+...+|+.+..
T Consensus        30 ~V~~~~LA~~Lgv----S~~SV~~~lkkL~e~GLV~~~------~~Gv~LTe~G~~   75 (200)
T 2p8t_A           30 PLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK------QRGHFLTLKGKE   75 (200)
T ss_dssp             CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC--------CEEECHHHHH
T ss_pred             CccHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe------CCCeEECHHHHH
Confidence            8999999999999    999999999999999999986      367788887753

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=83.04  E-value=1.7  Score=39.87  Aligned_cols=41  Identities=15%  Similarity=0.228  Sum_probs=33.6

Q ss_pred             CCCCeEEEEcCCccHHHHHHH-HHCCC-CeEEEeec-hhHhhhC
Q 035738          189 DNIKQLVDVGGGIGVTLQAIT-TKYPY-IKGINFDL-PHVIEHV  229 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~a  229 (333)
                      ++...++|||++.|.++..++ +..++ .+++.++. |...+..
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L  268 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTL  268 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence            567899999999999999988 56765 78999998 7665543

>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61

Probab=82.88  E-value=0.98  Score=36.32  Aligned_cols=64  Identities=17%  Similarity=0.351  Sum_probs=48.0

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHh--------CCCCCCCcccHHHHHHHHhcccceeeecc---CCCcccccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQL--------TTKNKDAPMMLDRILRLLASYSVVECSLD---ASGARRLYSLNSV  101 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~--------g~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~~y~~t~~  101 (333)
                      +++-|+..|.+    +|.+.-||++.+        ++    ++..+.+.|+-|...|+|+....   +++....|++|+.
T Consensus         3 l~~~iL~lL~~----~~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~   74 (179)
T 1yg2_A            3 LPHVILTVLST----RDATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQA   74 (179)
T ss_dssp             HHHHHHHHHHH----CCBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC---------CEEECHH
T ss_pred             hHHHHHHHHhc----CCCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChH
Confidence            34556777876    499999999999        57    88999999999999999997532   1223456999998


Q ss_pred             ccc
Q 035738          102 SKY  104 (333)
Q Consensus       102 ~~~  104 (333)
                      +..
T Consensus        75 G~~   77 (179)
T 1yg2_A           75 GRS   77 (179)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            863

>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A

Probab=82.55  E-value=1.3  Score=33.57  Aligned_cols=35  Identities=20%  Similarity=0.222  Sum_probs=32.6

Q ss_pred             CCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           48 AKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        48 g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..+ |..+||+.+|+    +..-+++-|+.|...|++...
T Consensus        26 ~~LPse~~La~~~gv----Sr~tVr~Al~~L~~~Gli~~~   61 (129)
T 2ek5_A           26 QRVPSTNELAAFHRI----NPATARNGLTLLVEAGILYKK   61 (129)
T ss_dssp             SCBCCHHHHHHHTTC----CHHHHHHHHHHHHTTTSEEEE
T ss_pred             CcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence            466 89999999999    999999999999999999987

>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8

Probab=82.33  E-value=0.26  Score=44.32  Aligned_cols=63  Identities=11%  Similarity=0.084  Sum_probs=0.0

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccccC
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPN  108 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~~  108 (333)
                      -+..++..|...   +++|..|||+.+|+    ++.-++|.|+.|...|++++.      .....+|+.+..+...
T Consensus        21 r~~~iL~~l~~~---~~~t~~eLa~~l~v----s~~Tv~r~l~~Le~~Glv~~~------~~gi~LT~~G~~~~~~   83 (345)
T 2o0m_A           21 ERFQILRNIYWM---QPIGRRSLSETMGI----TERVLRTETDVLKQLNLIEPS------KSGMTLTERGLEVYQG   83 (345)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE------ecceEEcHHHHHHHHH
Confidence            345677777765   48999999999999    999999999999999999854      3456778877766543

>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*

Probab=82.25  E-value=1  Score=39.94  Aligned_cols=57  Identities=14%  Similarity=0.253  Sum_probs=45.0

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccc
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV  101 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~  101 (333)
                      +..|++.|.+.   ++.|.++||+++|+    .+..++|-++.|...|++.+..    .+..|++.+.
T Consensus         7 ~~~Il~~L~~~---~~~s~~eLa~~l~v----S~~ti~r~l~~L~~~G~~i~~~----~g~GY~l~~~   63 (321)
T 1bia_A            7 PLKLIALLANG---EFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFTV----PGKGYSLPEP   63 (321)
T ss_dssp             HHHHHHHHTTS---SCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEEE----TTTEEECSSC
T ss_pred             HHHHHHHHHcC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCcEEEe----cCCCcEEeec
Confidence            34467777664   58999999999999    9999999999999999986542    2446777543

>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}

Probab=82.16  E-value=0.98  Score=34.84  Aligned_cols=44  Identities=14%  Similarity=0.088  Sum_probs=39.6

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      -.+.+.|.+    |+.|..+||+++|+    +....+-.|..|...|++.+.
T Consensus        14 ~~ILE~Lk~----G~~~t~~Iak~LGl----Shg~aq~~Ly~LeREG~V~~V   57 (165)
T 2vxz_A           14 RDILALLAD----GCKTTSLIQQRLGL----SHGRAKALIYVLEKEGRVTRV   57 (165)
T ss_dssp             HHHHHHHTT----CCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSCEEE
T ss_pred             HHHHHHHHh----CCccHHHHHHHhCC----cHHHHHHHHHHHHhcCceEEE
Confidence            346777883    69999999999999    999999999999999999987

>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17

Probab=80.77  E-value=1.1  Score=30.50  Aligned_cols=36  Identities=17%  Similarity=0.159  Sum_probs=32.7

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +.+++.++|+.+++.   ..+.+..++++|.++|++++.
T Consensus        29 ~~i~l~~aa~~L~v~---~kRRiYDI~NVLe~igli~K~   64 (76)
T 1cf7_A           29 GVLDLKLAADTLAVR---QKRRIYDITNVLEGIGLIEKK   64 (76)
T ss_dssp             TEEEHHHHHHHTTTC---CTHHHHHHHHHHHHHTSEEEE
T ss_pred             CcCcHHHHHHHhCCc---cceehhhHHHHHhHhcceeec
Confidence            689999999999982   578899999999999999986

>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}

Probab=80.24  E-value=0.68  Score=34.37  Aligned_cols=66  Identities=15%  Similarity=0.220  Sum_probs=48.9

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhC------CCCCCCcccHHHHHHHHhcccceeeecc---CCCcccccccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLT------TKNKDAPMMLDRILRLLASYSVVECSLD---ASGARRLYSLNSVSK  103 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g------~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~~y~~t~~~~  103 (333)
                      .++-|+..|.+    +|.+.-+|++.+.      +    ++..+...|+-|...|+|.....   +|+....|++|+.+.
T Consensus        10 l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~   81 (115)
T 4esb_A           10 LEGCILYIISQ----EEVYGYELSTKLNKHGFTFV----SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGL   81 (115)
T ss_dssp             HHHHHHHHHHH----SCEEHHHHHHHHHHTTCTTC----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHH
T ss_pred             HHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCC----CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHH
Confidence            34446667776    4899999999985      7    89999999999999999997531   222334588888876


Q ss_pred             ccc
Q 035738          104 YYV  106 (333)
Q Consensus       104 ~l~  106 (333)
                      ..+
T Consensus        82 ~~l   84 (115)
T 4esb_A           82 EQL   84 (115)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	333
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	1e-67
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	5e-64
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	6e-58
d1fp1d1	110	a.4.5.29 (D:19-128) Chalcone O-methyltransferase {	2e-34
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	2e-34
d1kyza1	107	a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic	2e-34
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	2e-30
d1fp2a1	101	a.4.5.29 (A:8-108) Isoflavone O-methyltransferase	4e-16
d1qzza1	92	a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R	1e-09
d1tw3a1	85	a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer	3e-08

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  209 bits (534), Expect = 1e-67
 Identities = 98/243 (40%), Positives = 129/243 (53%), Gaps = 23/243 (9%)

Query: 113 SLGPGIQITHDKVFLECWSQLKHAILEGGI-PFNRAHGMHTFEYAGLDPGFNKHFNTVMY 171
            L            L+ W   K A+++  I  F   HG+  +E+ G D   N+ FN  M 
Sbjct: 3   YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMV 62

Query: 172 NYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPP 231
           +  +  M  +LE Y GF+ I  LVDVGGG G  L+ I +KYP IKGINFDLP VIE+ PP
Sbjct: 63  DVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP 122

Query: 232 HP--------------------CMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLP 271
                                    + H+W+DE C++ L NC+K++  +GKVI VE +LP
Sbjct: 123 LSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP 182

Query: 272 EVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCE-RAIGNLWVME 330
           E PNTS ESK  S  D LM I   GG+ERT  ++  L+  +GFS      RA  +L VME
Sbjct: 183 EEPNTSEESKLVSTLDNLMFIT-VGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVME 241

Query: 331 FYK 333
           FYK
Sbjct: 242 FYK 244

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  200 bits (510), Expect = 5e-64
 Identities = 119/242 (49%), Positives = 154/242 (63%), Gaps = 20/242 (8%)

Query: 110 DGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTV 169
           DGVS+     +  DKV +E W  LK A+L+GGIPFN+A+GM  FEY G DP FNK FN  
Sbjct: 1   DGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKG 60

Query: 170 MYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHV 229
           M +++++ M  ILE+Y GF+ +K LVDVGGG G  +  I +KYP IKGINFDLPHVIE  
Sbjct: 61  MSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDA 120

Query: 230 PPHP--------------------CMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM 269
           P +P                      WI HDW+DEHCLK LKNCY+++P++GKVI  E +
Sbjct: 121 PSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI 180

Query: 270 LPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVM 329
           LP  P++S+ +K     DV+M+  +PGGKERT+ EF  LA GAGF G        N ++M
Sbjct: 181 LPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIM 240

Query: 330 EF 331
           EF
Sbjct: 241 EF 242

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  185 bits (470), Expect = 6e-58
 Identities = 63/245 (25%), Positives = 110/245 (44%), Gaps = 26/245 (10%)

Query: 112 VSLGPGIQITHDKVFLECWSQLKHAILEGGI-PFNRAHGMHTFEYAGLDPGFNKHFNTVM 170
           + L P ++   D      + +LK  I E  +  F    G   +++   +P +N  FN  M
Sbjct: 1   LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAM 60

Query: 171 YNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVP 230
            + + L+   + +    FD ++ +VDVGGG G T + I   +P +K I FD P V+E++ 
Sbjct: 61  ASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLS 120

Query: 231 PHP--------------------CMWILHDWNDEHCLKLLKNCYKSIP---EDGKVIAVE 267
                                    +ILH+W D+ CL++LK C +++    + GKV  ++
Sbjct: 121 GSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID 180

Query: 268 LMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLW 327
           +++ +  + +  ++     DV M      GKER   E+  L   AGF         G L 
Sbjct: 181 MVIDKKKDENQVTQIKLLMDVNMACL--NGKERNEEEWKKLFIEAGFQHYKISPLTGFLS 238

Query: 328 VMEFY 332
           ++E Y
Sbjct: 239 LIEIY 243

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  120 bits (302), Expect = 2e-34
 Identities = 46/109 (42%), Positives = 65/109 (59%), Gaps = 6/109 (5%)

Query: 8   ERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAG-PGAKLSASDIAAQL--TTKNK 64
             D +   A  L   +V P  + A  +L +FEII KA  PGA +S S+IA++L  +T++ 
Sbjct: 2   TEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHS 61

Query: 65  DAPMMLDRILRLLASYSVVECSLDAS---GARRLYSLNSVSKYYVPNKD 110
           D P  LDR+LRLLASYSV+  +       GA R+Y L+ V KY VP++ 
Sbjct: 62  DLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDES 110

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score =  124 bits (312), Expect = 2e-34
 Identities = 47/237 (19%), Positives = 90/237 (37%), Gaps = 37/237 (15%)

Query: 129 CWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGF 188
            ++ L   +  G   +   +G   +E    D      F+ +M     L      ++Y  +
Sbjct: 21  AFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-W 79

Query: 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPP----------------- 231
             ++ ++DVGGG G  L AI  + P+++G   +L    E                     
Sbjct: 80  SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGD 139

Query: 232 -----------HPCMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIES 280
                          ++L +W+DE  L +L+ C +++   G+++ ++    E        
Sbjct: 140 FFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFF 199

Query: 281 KSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERA-----IGNLWVMEFY 332
            +  D   L M+   GG+ RTR E + LA  AG +  S   +       +  ++EF 
Sbjct: 200 STLLD---LRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFT 253

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  119 bits (301), Expect = 2e-34
 Identities = 50/105 (47%), Positives = 71/105 (67%), Gaps = 3/105 (2%)

Query: 8   ERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAP 67
             +++  +A QLA   VLPM +++  EL + EII KAGPGA++S  +IA+QL T N DAP
Sbjct: 3   SDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAP 62

Query: 68  MMLDRILRLLASYSVVECSLDAS---GARRLYSLNSVSKYYVPNK 109
           +MLDR+LRLLA Y ++ CS+        +RLY L +V+KY V N+
Sbjct: 63  VMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 107

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score =  113 bits (284), Expect = 2e-30
 Identities = 37/221 (16%), Positives = 84/221 (38%), Gaps = 33/221 (14%)

Query: 129 CWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGF 188
            +++L  AI  G   +   +G   +E     P     F++++     +       +Y  +
Sbjct: 20  SFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-W 78

Query: 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPP----------------- 231
            N++ ++DVGGG G    AI  + P++     ++   ++                     
Sbjct: 79  TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGD 138

Query: 232 -----------HPCMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIES 280
                          ++L +W D   +++L  C +++   G+++  E       +    +
Sbjct: 139 FFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSF---N 195

Query: 281 KSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCER 321
           +  ++ D+ M++   GG  RTR ++  LA  AG       +
Sbjct: 196 EQFTELDLRMLVF-LGGALRTREKWDGLAASAGLVVEEVRQ 235

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 70.7 bits (173), Expect = 4e-16
 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 6/100 (6%)

Query: 11  QSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMML 70
           ++ A   +     +  M+++   E+ I  II   G    +S S++ + L   +     + 
Sbjct: 8   KAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKP--ISLSNLVSILQVPSSKIGNV- 64

Query: 71  DRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKD 110
            R++R LA     E           Y+L   S+  V   D
Sbjct: 65  RRLMRYLAHNGFFEIITKEE---ESYALTVASELLVRGSD 101

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 52.4 bits (126), Expect = 1e-09
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 11/100 (11%)

Query: 8   ERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAP 67
             DQ      +    +V PMA++    L + + +  AG     + + +A +  T     P
Sbjct: 3   PTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHL-LAGA---DTLAGLADRTDTH----P 54

Query: 68  MMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVP 107
             L R++R L    V+E                +      
Sbjct: 55  QALSRLVRHLTVVGVLEGGEKQGRP---LRPTRLGMLLAD 91

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 48.3 bits (115), Expect = 3e-08
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 13/87 (14%)

Query: 22  GIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYS 81
            +  PM ++    L + + I         +   +AA+  T+    P  L R++R L +  
Sbjct: 11  SLHTPMVVRTAATLRLVDHI----LAGARTVKALAARTDTR----PEALLRLIRHLVAIG 62

Query: 82  VVECSLDASGARRLYSLNSVSKYYVPN 108
           ++E       A   +    V +    +
Sbjct: 63  LLEED-----APGEFVPTEVGELLADD 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	333
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	100.0
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	100.0
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	100.0
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	100.0
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	100.0
d1fp2a1	101	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.72
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.7
d1kyza1	107	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.66
d1tw3a1	85	Carminomycin 4-O-methyltransferase {Streptomyces p	99.64
d1fp1d1	110	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.6
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.59
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.59
d1qzza1	92	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.59
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.56
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.54
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.53
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.5
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.49
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.47
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.46
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.43
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.42
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.38
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.3
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.28
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.28
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.27
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.22
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.22
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.21
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.18
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.18
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.17
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.1
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.1
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.08
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.05
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.03
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.02
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.96
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.95
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.94
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.94
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.92
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.91
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.9
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.89
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.87
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	98.86
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.8
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.67
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.54
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.51
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.5
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.3
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.25
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.1
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.05
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.03
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.0
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	97.93
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	97.91
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	97.83
d1mkma1	75	Transcriptional regulator IclR, N-terminal domain	97.8
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.73
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.72
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.72
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.71
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.66
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	97.64
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.52
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.51
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.51
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.5
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.49
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.44
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.41
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.4
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	97.37
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	97.32
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	97.24
d2h00a1	250	Methyltransferase 10 domain containing protein MET	97.23
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	97.13
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	97.01
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	96.99
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	96.94
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	96.94
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	96.86
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	96.83
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	96.83
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	96.65
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	96.63
d1ub9a_	100	Hypothetical protein PH1061 {Archaeon Pyrococcus h	96.49
d1biaa1	63	Biotin repressor, N-terminal domain {Escherichia c	96.4
d1r1ta_	98	SmtB repressor {Cyanobacteria (Synechococcus), pcc	96.29
d1z05a1	71	Transcriptional regulator VC2007 N-terminal domain	96.21
d1lvaa3	64	C-terminal fragment of elongation factor SelB {Moo	96.15
d1r1ua_	94	Metal-sensing transcriptional repressor CzrA {Stap	96.15
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	96.14
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	96.04
d1j5ya1	65	Putative transcriptional regulator TM1602, N-termi	96.03
d1u2wa1	108	Cadmium efflux system accessory protein CadC {Stap	96.03
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	95.95
d2hoea1	62	N-acetylglucosamine kinase {Thermotoga maritima [T	95.89
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	95.56
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	95.54
d1z6ra1	70	Mlc protein N-terminal domain {Escherichia coli [T	95.53
d1xd7a_	127	Hypothetical protein ywnA {Bacillus subtilis [TaxI	95.37
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	95.37
d2p4wa1	194	Transcriptional regulatory protein PF1790 {Pyrococ	95.3
d3ctaa1	85	Ta1064 (RFK), N-terminal domain {Thermoplasma acid	95.17
d1sfxa_	109	Hypothetical protein AF2008 {Archaeoglobus fulgidu	95.05
d1ulya_	190	Hypothetical protein PH1932 {Pyrococcus horikoshii	95.03
d2d1ha1	109	Hypothetical transcriptional regulator ST1889 {Sul	95.02
d2gxba1	59	Z-alpha domain of dsRNA-specific adenosine deamina	95.0
d1r7ja_	90	Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu	94.75
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	94.74
d2a61a1	139	Transcriptional regulator TM0710 {Thermotoga marit	94.39
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	94.3
d1i1ga1	60	LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.2
d1ylfa1	138	Hypothetical protein BC1842 {Bacillus cereus [TaxI	94.19
d2hr3a1	145	Probable transcriptional regulator PA3067 {Pseudom	94.14
d2cyya1	60	Putative transcriptional regulator PH1519 {Archaeo	94.1
d1s3ja_	143	Putative transcriptional regulator YusO {Bacillus	94.06
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	93.89
d1lnwa_	141	MexR repressor {Pseudomonas aeruginosa [TaxId: 287	93.85
d2etha1	140	Putative transcriptional regulator TM0816 {Thermot	93.84
d2cfxa1	63	Transcriptional regulator LrpC {Bacillus subtilis	93.59
d1ku9a_	151	DNA-binding protein Mj223 {Archaeon Methanococcus	93.54
d2cg4a1	63	Regulatory protein AsnC {Escherichia coli [TaxId:	93.53
d2f2ea1	142	Hypothetical protein PA1607 {Pseudomonas aeruginos	93.49
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.47
d2bv6a1	136	Transcriptional regulator MgrA {Staphylococcus aur	93.09
d2ev0a1	61	Manganese transport regulator MntR {Bacillus subti	93.06
d3broa1	135	Transcriptional regulator OEOE1854 {Oenococcus oen	92.98
d1jgsa_	138	Multiple antibiotic resistance repressor, MarR {Es	92.92
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	92.9
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.84
d1xmka1	73	Z-alpha domain of dsRNA-specific adenosine deamina	92.83
d1jhfa1	71	LexA repressor, N-terminal DNA-binding domain {Esc	92.8
d2hzta1	95	Putative transcriptional regulator YtcD {Bacillus	92.74
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	92.72
d1q1ha_	88	Transcription factor E/IIe-alpha, N-terminal domai	92.59
d1j75a_	57	Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}	92.5
d2fbha1	137	Transcriptional regulator PA3341 {Pseudomonas aeru	92.36
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	91.98
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	91.97
d2isya1	63	Iron-dependent regulator IdeR {Mycobacterium tuber	91.94
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	91.22
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	91.2
d1dpua_	69	C-terminal domain of RPA32 {Human (Homo sapiens) [	91.17
d2fswa1	102	Hypothetical protein PG0823 {Porphyromonas gingiva	91.03
d2fbka1	172	Transcriptional regulator DR1159 {Deinococcus radi	90.88
d1z91a1	137	Organic hydroperoxide resistance transcriptional r	90.35
d2frha1	115	Pleiotropic regulator of virulence genes, SarA {St	90.32
d1lj9a_	144	Transcriptional regulator SlyA {Enterococcus faeca	89.91
d3deua1	140	Transcriptional regulator SlyA {Salmonella typhimu	89.79
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	89.58
d1z7ua1	108	Hypothetical protein EF0647 {Enterococcus faecalis	89.52
d1yyva1	114	Putative transcriptional regulator YtfH {Salmonell	89.42
d2fbia1	136	Probable transcriptional regulator PA4135 {Pseudom	88.82
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	88.81
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	88.61
d2fxaa1	162	Protease production regulatory protein Hpr {Bacill	88.07
d1p4xa1	125	Staphylococcal accessory regulator A homolog, SarS	88.0
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	87.52
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	87.16
d1hsja1	115	Staphylococcal accessory regulator A homolog, SarR	87.0
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	86.93
d2hs5a1	69	Putative transcriptional regulator RHA1_ro03477 {R	86.48
d2obpa1	81	Putative DNA-binding protein ReutB4095 {Ralstonia	86.31
d1sfua_	70	34L {Yaba-like disease virus, YLDV [TaxId: 132475]	86.24
d2p8ta1	69	Hypothetical protein PH0730 {Pyrococcus horikoshii	86.2
d1hw1a1	74	Fatty acid responsive transcription factor FadR, N	84.72
d1p4xa2	125	Staphylococcal accessory regulator A homolog, SarS	84.51
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	83.87
d1zyba1	73	Probable transcription regulator BT4300, C-termina	83.84
d2gaua1	81	Transcriptional regulator PG0396, C-terminal domai	83.82
d3bwga1	78	Transcriptional regulator YydK {Bacillus subtilis	83.67
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	83.59
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	83.51
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	83.36
d1i5za1	69	Catabolite gene activator protein (CAP), C-termina	82.95
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	82.58
d2zcwa1	82	Transcriptional regulator TTHA1359, C-terminal dom	82.31
d1vpta_	297	Polymerase regulatory subunit VP39 {Vaccinia virus	82.07
d1cf7a_	67	Cell cycle transcription factor E2F-4 {Human (Homo	81.36
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	81.2
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	80.17

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=5.7e-42  Score=297.06  Aligned_cols=221  Identities=43%  Similarity=0.735  Sum_probs=186.2

Q ss_pred             CChhhhHhhccChhhHHhhhhhHHHHhcCC-ChhhhhcCCChhhhhcCCchhHHHHHHHHhhhhhhhHHHHHhhccCCCC
Q 035738          112 VSLGPGIQITHDKVFLECWSQLKHAILEGG-IPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDN  190 (333)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~  190 (333)
                      +|+++++.+.+.|.++++|.+|.++++++. ++|+.++|.++|+|+.++|+..+.|+++|...+....+.+++.++.+++
T Consensus         2 g~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~   81 (244)
T d1fp1d2           2 GYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEG   81 (244)
T ss_dssp             CCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTT
T ss_pred             ccHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            488999999889999999999999999865 5799999999999999999999999999999999999999999986789


Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCCCCe--------------------EEEccCChhHHHHHH
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM--------------------WILHDWNDEHCLKLL  250 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~gv--------------------~vLh~~~~~~~~~lL  250 (333)
                      ..+|||||||+|.++..+++++|++++|++|+|.+++.+.....+                    +|||+|+|++|.++|
T Consensus        82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL  161 (244)
T d1fp1d2          82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFL  161 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHH
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHHH
Confidence            999999999999999999999999999999999999887654221                    999999999999999


Q ss_pred             HHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeec-CCceeEE
Q 035738          251 KNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERA-IGNLWVM  329 (333)
Q Consensus       251 ~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~vi  329 (333)
                      ++++++|+|||+|+|+|.+.++.+...........+|+.|+..+ +|++||.+||.+||++|||+.+++++. .+.++||
T Consensus       162 ~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~-~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~~vi  240 (244)
T d1fp1d2         162 SNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVM  240 (244)
T ss_dssp             HHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEE
T ss_pred             HHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhC-CCcCCCHHHHHHHHHHcCCCceEEEecCCCCEEEE
Confidence            99999999999999999999876554333334567788888764 899999999999999999999999765 5789999


Q ss_pred             EEeC
Q 035738          330 EFYK  333 (333)
Q Consensus       330 e~~~  333 (333)
                      |++|
T Consensus       241 E~~K  244 (244)
T d1fp1d2         241 EFYK  244 (244)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9998

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=1.2e-41  Score=295.91  Aligned_cols=221  Identities=53%  Similarity=0.985  Sum_probs=198.5

Q ss_pred             CChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHHHHHHHhhhhhhhHHHHHhhccCCCCC
Q 035738          112 VSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNI  191 (333)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~  191 (333)
                      .|+++++.+.+++.+++.|.+|.+++|+|+++|+.++|.++|+|++++|+..+.|+++|...+....+.++..++.+++.
T Consensus         3 ~s~~~~~~~~~~~~~~~~W~~L~~avrtG~~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~~   82 (243)
T d1kyza2           3 VSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGL   82 (243)
T ss_dssp             CCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSC
T ss_pred             CcHHHHHHHhcCHHHHHHHHHHHHHHhhCCCHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccCC
Confidence            47899999888888999999999999999999999999999999999999999999999999988888899988855678


Q ss_pred             CeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCCCCe--------------------EEEccCChhHHHHHHH
Q 035738          192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM--------------------WILHDWNDEHCLKLLK  251 (333)
Q Consensus       192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~gv--------------------~vLh~~~~~~~~~lL~  251 (333)
                      .+|||||||+|.++..++++||+++++++|+|.+++.++..+.+                    ++||+|++++|.++|+
T Consensus        83 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~iL~  162 (243)
T d1kyza2          83 KSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLK  162 (243)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHHHHH
T ss_pred             cEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHHHHH
Confidence            89999999999999999999999999999999999988765321                    9999999999999999


Q ss_pred             HHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecCCceeEEEE
Q 035738          252 NCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEF  331 (333)
Q Consensus       252 ~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~  331 (333)
                      +++++|+|||+++|+|.+.++.............+|+.||.++.+|++||.+||++||++|||+.+++++.....+|||.
T Consensus       163 ~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~~~viE~  242 (243)
T d1kyza2         163 NCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEF  242 (243)
T ss_dssp             HHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETTEEEEEE
T ss_pred             HHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCCCEEEEe
Confidence            99999999999999999988765443222334567888887766899999999999999999999999999999999997


Q ss_pred             e
Q 035738          332 Y  332 (333)
Q Consensus       332 ~  332 (333)
                      +
T Consensus       243 ~  243 (243)
T d1kyza2         243 L  243 (243)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=2.4e-39  Score=280.65  Aligned_cols=219  Identities=29%  Similarity=0.523  Sum_probs=189.6

Q ss_pred             ChhhhHhhccChhhHHhhhhhHHHHhcCC-ChhhhhcCCChhhhhcCCchhHHHHHHHHhhhhhhhHHHHHhhccCCCCC
Q 035738          113 SLGPGIQITHDKVFLECWSQLKHAILEGG-IPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNI  191 (333)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~L~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~  191 (333)
                      ++.+++.+..+|.++..|..|+++++++. ++|+.++|.++|+|++++|+..+.|+++|...+......+......+++.
T Consensus         2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~~~~~   81 (244)
T d1fp2a2           2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGL   81 (244)
T ss_dssp             CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHHHTTC
T ss_pred             ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhcccccCc
Confidence            56778888888999999999999999875 68999999999999999999999999999998887766665533236788


Q ss_pred             CeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCCCC----------------e----EEEccCChhHHHHHHH
Q 035738          192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPC----------------M----WILHDWNDEHCLKLLK  251 (333)
Q Consensus       192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~g----------------v----~vLh~~~~~~~~~lL~  251 (333)
                      .+|||||||+|.++..++++||+++++++|+|.+++.+....+                +    +|||+|+|++|+++|+
T Consensus        82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~iL~  161 (244)
T d1fp2a2          82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILK  161 (244)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHH
T ss_pred             eEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHHHH
Confidence            9999999999999999999999999999999999998865322                1    9999999999999999


Q ss_pred             HHHHhCCCC---cEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecCCceeE
Q 035738          252 NCYKSIPED---GKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWV  328 (333)
Q Consensus       252 ~~~~~L~pg---G~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~v  328 (333)
                      +++++|+||   |+++|+|.+.++.............+|+.|+.  .+|++||.+||++||++|||+.+++++.+++++|
T Consensus       162 ~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~--~~G~ert~~e~~~ll~~AGf~~~~i~~~~~~~sv  239 (244)
T d1fp2a2         162 KCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC--LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSL  239 (244)
T ss_dssp             HHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG--GTCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEE
T ss_pred             HHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh--CCCcCCCHHHHHHHHHHcCCceEEEEECCCCeEE
Confidence            999999998   89999999998765443222233456776664  3899999999999999999999999999999999


Q ss_pred             EEEeC
Q 035738          329 MEFYK  333 (333)
Q Consensus       329 ie~~~  333 (333)
                      ||++|
T Consensus       240 IE~~p  244 (244)
T d1fp2a2         240 IEIYP  244 (244)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99987

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=100.00  E-value=1.2e-36  Score=266.36  Aligned_cols=218  Identities=22%  Similarity=0.372  Sum_probs=183.9

Q ss_pred             CChhhhHhhccChhhH-HhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHHHHHHHhhhhhhhHHHHHhhccCCCC
Q 035738          112 VSLGPGIQITHDKVFL-ECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDN  190 (333)
Q Consensus       112 ~~~~~~~~~~~~~~~~-~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~  190 (333)
                      .++++|+.+....... .+|.+|.+++|+|.++|+..+|.++|+|++++|+..+.|+++|...+....+.+++.++ +++
T Consensus         3 ~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~   81 (256)
T d1qzza2           3 AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSA   81 (256)
T ss_dssp             TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTT
T ss_pred             HHHHHHHhhcCchhhhHhhHHHHHHHHHhCCchhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-Ccc
Confidence            4677787765434443 37999999999999999999999999999999999999999999999988999999998 999


Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC---------------------C-C--e----EEEccCC
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH---------------------P-C--M----WILHDWN  242 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---------------------~-g--v----~vLh~~~  242 (333)
                      ..+|||||||+|.++..+++++|+++++++|+|.+++.+++.                     | +  +    ++||+|+
T Consensus        82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~~~  161 (256)
T d1qzza2          82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWS  161 (256)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSC
T ss_pred             CCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccccccccC
Confidence            999999999999999999999999999999999888766532                     0 1  1    8999999


Q ss_pred             hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738          243 DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       243 ~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  322 (333)
                      ++++.++|++++++|+|||+++|+|.+.+++...  .......+|+.|+... +|++||.+||+++|++|||+++++++.
T Consensus       162 d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~--~~~~~~~~d~~ml~~~-~g~~rt~~e~~~ll~~AGf~~~~~~~~  238 (256)
T d1qzza2         162 DEDALTILRGCVRALEPGGRLLVLDRADVEGDGA--DRFFSTLLDLRMLTFM-GGRVRTRDEVVDLAGSAGLALASERTS  238 (256)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEECCH---------HHHHHHHHHHHHHHH-SCCCCCHHHHHHHHHTTTEEEEEEEEE
T ss_pred             cHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcc--cHHHHHHHHHHHHhhC-CCccCCHHHHHHHHHHCCCceeEEEEe
Confidence            9999999999999999999999999876654322  1234566788888775 899999999999999999999999876


Q ss_pred             C-----CceeEEEEeC
Q 035738          323 I-----GNLWVMEFYK  333 (333)
Q Consensus       323 ~-----~~~~vie~~~  333 (333)
                      +     ..++|+|+.+
T Consensus       239 ~~~~~~~~~~v~E~~~  254 (256)
T d1qzza2         239 GSTTLPFDFSILEFTA  254 (256)
T ss_dssp             CCSSCSSCEEEEEEEE
T ss_pred             CCcCccCceEEEEEEe
Confidence            4     3568999863

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=100.00  E-value=4.1e-34  Score=250.07  Aligned_cols=202  Identities=19%  Similarity=0.344  Sum_probs=173.6

Q ss_pred             HHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHHHHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHH
Q 035738          127 LECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQ  206 (333)
Q Consensus       127 ~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~  206 (333)
                      ..+|.+|.+++|+|+++|+.++|.++|+|+.++|+..+.|..+|...+....+.+++.++ +++..+|||||||+|.++.
T Consensus        18 ~~~~~~L~~~vr~G~~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~~~VLDvGcG~G~~~~   96 (253)
T d1tw3a2          18 DISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAA   96 (253)
T ss_dssp             GGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHH
T ss_pred             cccHHHHHHHHHhCCchhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC-CccCCEEEEeCCCCCHHHH
Confidence            347899999999999999999999999999999999999999999999988899999998 9999999999999999999


Q ss_pred             HHHHHCCCCeEEEeechhHhhhCCCC---C----C-----------------e----EEEccCChhHHHHHHHHHHHhCC
Q 035738          207 AITTKYPYIKGINFDLPHVIEHVPPH---P----C-----------------M----WILHDWNDEHCLKLLKNCYKSIP  258 (333)
Q Consensus       207 ~l~~~~p~~~~~~~D~~~~~~~a~~~---~----g-----------------v----~vLh~~~~~~~~~lL~~~~~~L~  258 (333)
                      .+++++|+++++++|+|.+++.+++.   .    .                 +    ++||+|+++++.++|++++++|+
T Consensus        97 ~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lk  176 (253)
T d1tw3a2          97 AIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALE  176 (253)
T ss_dssp             HHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEE
T ss_pred             HHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHHhcC
Confidence            99999999999999998888766532   0    0                 1    89999999999999999999999


Q ss_pred             CCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecC-----CceeEEEEeC
Q 035738          259 EDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAI-----GNLWVMEFYK  333 (333)
Q Consensus       259 pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-----~~~~vie~~~  333 (333)
                      |||+|+|.|...++....   ......+|+.|+..+ +|++||.+||+++|++|||+++++...+     ....+|+..|
T Consensus       177 PGG~l~i~e~~~~~~~~~---~~~~~~~dl~~~~~~-~g~~rt~~e~~~ll~~AGf~~~~v~~~~~p~~~~~~~li~~~P  252 (253)
T d1tw3a2         177 PGGRILIHERDDLHENSF---NEQFTELDLRMLVFL-GGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP  252 (253)
T ss_dssp             EEEEEEEEECCBCGGGCC---SHHHHHHHHHHHHHH-SCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             CCcEEEEEeccCCCCCcc---hhHHHHhhHHHHhhC-CCcCCCHHHHHHHHHHCCCeEEEEEECCCCCCCccEEEEEEec
Confidence            999999999876543322   123456788888764 8999999999999999999999987653     3456776643

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.72  E-value=7.6e-18  Score=123.48  Aligned_cols=96  Identities=21%  Similarity=0.228  Sum_probs=82.0

Q ss_pred             hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738            8 ERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus         8 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      |.+++...|++++.||+.+++|++|+++||||.|+++|  ||+|++|||+++++ ++.+++.+.|+||+|++.|+|+++.
T Consensus         5 e~~qaq~~l~~~~~gf~~s~aL~~aveLgi~d~l~~~~--~p~t~~eLa~~~~~-~~~~~~~L~RlLR~L~~~gi~~~~~   81 (101)
T d1fp2a1           5 EIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIIT   81 (101)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHcC--CCCCHHHHHHHcCC-CCccchHHHHHHHHHHhCCceeeec
Confidence            55788889999999999999999999999999998765  69999999999998 1113356999999999999998752


Q ss_pred             cCCCccccccccccccccccCC
Q 035738           88 DASGARRLYSLNSVSKYYVPNK  109 (333)
Q Consensus        88 ~~~~~~~~y~~t~~~~~l~~~~  109 (333)
                         +++++|.+|+.|+.|+.+.
T Consensus        82 ---~~~~~Y~lt~~s~~Lv~~~  100 (101)
T d1fp2a1          82 ---KEEESYALTVASELLVRGS  100 (101)
T ss_dssp             ---SSSEEEEECHHHHTTSTTS
T ss_pred             ---CCCCeEecCHHHHHhhcCC
Confidence               2467899999999887654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.70  E-value=3.8e-17  Score=138.86  Aligned_cols=145  Identities=17%  Similarity=0.123  Sum_probs=102.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHH--CCCCeEEEeec-hhHhhhCCCC-----CC-------------------e----E
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTK--YPYIKGINFDL-PHVIEHVPPH-----PC-------------------M----W  236 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~-----~g-------------------v----~  236 (333)
                      ..+..+|||||||+|..+..+++.  .|+.+++++|+ +.|++.|++.     ..                   +    .
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~  116 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF  116 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence            456789999999999999999986  48899999999 8999988642     00                   0    7


Q ss_pred             EEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHh-hC------------CCCCcCCHH
Q 035738          237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMI-QS------------PGGKERTRH  303 (333)
Q Consensus       237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~-~~------------~~g~~rt~~  303 (333)
                      ++|++++++..++|++++++|+|||.+++.|...++.+..... .......+.... ..            ..-...+.+
T Consensus       117 ~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  195 (225)
T d1im8a_         117 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHL-LIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIE  195 (225)
T ss_dssp             CGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHH
T ss_pred             eccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhH-HHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHH
Confidence            8889988888899999999999999999999887664321100 000000110000 00            001346889


Q ss_pred             HHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738          304 EFMTLATGAGFSGISCERAIGNLWVMEFYK  333 (333)
Q Consensus       304 e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  333 (333)
                      ++.++|+++||+.++++-.......+.++|
T Consensus       196 ~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k  225 (225)
T d1im8a_         196 THKVRLKNVGFSQVELWFQCFNFGSMIAVK  225 (225)
T ss_dssp             HHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence            999999999999999875444444455554

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.66  E-value=7.8e-17  Score=118.18  Aligned_cols=100  Identities=50%  Similarity=0.815  Sum_probs=86.5

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeecc
Q 035738            9 RDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLD   88 (333)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~   88 (333)
                      ..+.....++++.+++.+++|++|++|||||+|+++|+++++|..||+.+++.+||..+..++|+||.|++.|+|++..+
T Consensus         4 dee~~l~a~~L~~~~v~pmaLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~~   83 (107)
T d1kyza1           4 DEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVR   83 (107)
T ss_dssp             HHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEeee
Confidence            45667788899999999999999999999999999887789999999999999877667789999999999999987542


Q ss_pred             ---CCCccccccccccccccccC
Q 035738           89 ---ASGARRLYSLNSVSKYYVPN  108 (333)
Q Consensus        89 ---~~~~~~~y~~t~~~~~l~~~  108 (333)
                         +|+....|.+||.|+.|+.+
T Consensus        84 ~~~dg~~~~~Y~LTpvsk~Lv~d  106 (107)
T d1kyza1          84 TQQDGKVQRLYGLATVAKYLVKN  106 (107)
T ss_dssp             ECTTSCEEEEEEECHHHHHHSCC
T ss_pred             cCCCCCeeeEEecchhHHhhcCC
Confidence               23334579999999998876

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.64  E-value=2.6e-16  Score=111.90  Aligned_cols=80  Identities=19%  Similarity=0.227  Sum_probs=72.9

Q ss_pred             HHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccc
Q 035738           17 NQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLY   96 (333)
Q Consensus        17 ~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y   96 (333)
                      .....+++.+++|++|+++||||.|.+    ||.|++|||+++|+    ++..+.|+||+|++.|+++++     +++.|
T Consensus         6 l~~l~~~~~~~aL~~av~L~ifd~l~~----gp~s~~eLA~~~g~----~~~~l~rlLr~l~a~gl~~e~-----~~~~y   72 (85)
T d1tw3a1           6 LIRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED-----APGEF   72 (85)
T ss_dssp             HHHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----ETTEE
T ss_pred             HHHHHchHHHHHHHHHHHcCcHHHhcc----CCCCHHHHHHHhCc----ChhHHHHHHHHHHHCCCeEec-----CCCeE
Confidence            344588899999999999999999987    69999999999999    999999999999999999987     47899


Q ss_pred             cccccccccccCC
Q 035738           97 SLNSVSKYYVPNK  109 (333)
Q Consensus        97 ~~t~~~~~l~~~~  109 (333)
                      .+|+.|+.|.+++
T Consensus        73 ~lt~~s~~L~~Dh   85 (85)
T d1tw3a1          73 VPTEVGELLADDH   85 (85)
T ss_dssp             EECTTGGGGSTTS
T ss_pred             ecCHHHHHhhcCC
Confidence            9999999888764

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.60  E-value=1.2e-15  Score=112.08  Aligned_cols=102  Identities=44%  Similarity=0.698  Sum_probs=84.5

Q ss_pred             hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcC-CCCCCCHHHHHHHhCC--CCCCCcccHHHHHHHHhccccee
Q 035738            8 ERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAG-PGAKLSASDIAAQLTT--KNKDAPMMLDRILRLLASYSVVE   84 (333)
Q Consensus         8 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~-~~g~~t~~ela~~~g~--~~~~~~~~l~~lL~~L~~~g~l~   84 (333)
                      +..+.+...++++.+++.+++|++|++|||+|.|+.+| +++++|++||+.++.+  +||..+..+.|+||.|++.|+|+
T Consensus         2 ~~~~~~l~a~~L~~~~v~pMaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf~   81 (110)
T d1fp1d1           2 TEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLT   81 (110)
T ss_dssp             CHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEE
T ss_pred             chHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCccc
Confidence            55778899999999999999999999999999999875 4567999999999885  33333457999999999999998


Q ss_pred             eecc---CCCccccccccccccccccCC
Q 035738           85 CSLD---ASGARRLYSLNSVSKYYVPNK  109 (333)
Q Consensus        85 ~~~~---~~~~~~~y~~t~~~~~l~~~~  109 (333)
                      +...   +|.....|.+|+.++.|+.++
T Consensus        82 ~~~~~~~~g~~e~~Y~Ltpvsk~Lv~de  109 (110)
T d1fp1d1          82 STTRTIEDGGAERVYGLSMVGKYLVPDE  109 (110)
T ss_dssp             EEEEECTTSCEEEEEEECTTGGGGSTTC
T ss_pred             cccccCCCCCeeeEEecchhhHhhcCCC
Confidence            6542   232345799999999998875

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.59  E-value=1.9e-15  Score=132.60  Aligned_cols=144  Identities=13%  Similarity=0.119  Sum_probs=103.3

Q ss_pred             HHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe---
Q 035738          167 NTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM---  235 (333)
Q Consensus       167 ~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv---  235 (333)
                      ..++..........+....+ +++..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++.       .++   
T Consensus        45 ~~a~~~~~~~~~~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~  122 (282)
T d2o57a1          45 REASLRTDEWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVK  122 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccccccccccc
Confidence            34444444444555666555 8889999999999999999999876 578999999 8887766532       011   


Q ss_pred             --------------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCC
Q 035738          236 --------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSP  295 (333)
Q Consensus       236 --------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~  295 (333)
                                          .++|++++..  ++|++++++|+|||++++.++...+.....   ....+.+   ...  
T Consensus       123 ~~d~~~l~~~~~sfD~V~~~~~l~h~~d~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---~~~~~~~---~~~--  192 (282)
T d2o57a1         123 YGSFLEIPCEDNSYDFIWSQDAFLHSPDKL--KVFQECARVLKPRGVMAITDPMKEDGIDKS---SIQPILD---RIK--  192 (282)
T ss_dssp             ECCTTSCSSCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEECTTCCGG---GGHHHHH---HHT--
T ss_pred             ccccccccccccccchhhccchhhhccCHH--HHHHHHHHhcCCCcEEEEEEeecCCCCchh---HHHHHHH---Hhc--
Confidence                                6778888765  899999999999999999999877643221   1111111   111  


Q ss_pred             CCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738          296 GGKERTRHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       296 ~g~~rt~~e~~~ll~~aGf~~~~~~~~  322 (333)
                      .....+.++|.++++++||+.+++...
T Consensus       193 ~~~~~s~~~~~~~l~~~Gf~~i~~~d~  219 (282)
T d2o57a1         193 LHDMGSLGLYRSLAKECGLVTLRTFSR  219 (282)
T ss_dssp             CSSCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred             cCCCCCHHHHHHHHHHcCCceEEEEEC
Confidence            223457899999999999998888764

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.59  E-value=1e-15  Score=130.06  Aligned_cols=132  Identities=14%  Similarity=0.243  Sum_probs=96.9

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe----------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM----------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv----------------  235 (333)
                      ..+++..+ +.+..+|||||||+|.++..+++..+  +++++|+ +.+++.|++.      +++                
T Consensus         5 ~~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~   81 (231)
T d1vl5a_           5 AKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER   81 (231)
T ss_dssp             HHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred             HHHHHhcC-CCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence            45666666 88899999999999999999998864  6899999 8888876431      221                


Q ss_pred             -------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHh-hCCCCCcCCHHHHHH
Q 035738          236 -------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMI-QSPGGKERTRHEFMT  307 (333)
Q Consensus       236 -------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~-~~~~g~~rt~~e~~~  307 (333)
                             .++|+++|.+  ++|++++++|+|||+++|.++..++...      +....+..... .......++.++|.+
T Consensus        82 fD~v~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (231)
T d1vl5a_          82 FHIVTCRIAAHHFPNPA--SFVSEAYRVLKKGGQLLLVDNSAPENDA------FDVFYNYVEKERDYSHHRAWKKSDWLK  153 (231)
T ss_dssp             EEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEBCSSHH------HHHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred             cccccccccccccCCHH--HHHHHHHHhcCCCcEEEEEeCCCCCCHH------HHHHHHHHHhhcccCcccCCCHHHHHH
Confidence                   7788888766  8999999999999999999987665311      11111111111 112345678999999


Q ss_pred             HHHhCCCCeeEEee
Q 035738          308 LATGAGFSGISCER  321 (333)
Q Consensus       308 ll~~aGf~~~~~~~  321 (333)
                      +|+++||+++++..
T Consensus       154 ~l~~aGf~~~~~~~  167 (231)
T d1vl5a_         154 MLEEAGFELEELHC  167 (231)
T ss_dssp             HHHHHTCEEEEEEE
T ss_pred             HHHHCCCEEEEEEE
Confidence            99999999887654

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.59  E-value=1.1e-15  Score=109.81  Aligned_cols=88  Identities=19%  Similarity=0.232  Sum_probs=77.7

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeecc
Q 035738            9 RDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLD   88 (333)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~   88 (333)
                      ..+.+..+++++.+|+.+++|++|+++||||.|++    ||.|++|||+++|+    +++.+.|+||+|+++|++++..+
T Consensus         4 ~d~~~d~ll~~~~~~~~~~~L~~aveL~ifd~L~~----gp~t~~eLA~~~g~----~~~~l~rLlr~L~a~gll~~~~d   75 (92)
T d1qzza1           4 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGGEK   75 (92)
T ss_dssp             CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECCCC
T ss_pred             cchhHHHHHHHHHchHHHHHHHHHHHcCchHHHhC----CCCCHHHHHHHHCc----CchHHHHHHHHHHHCCCeeeecC
Confidence            35788999999999999999999999999999987    69999999999999    99999999999999999998721


Q ss_pred             CCCcccccccccccccccc
Q 035738           89 ASGARRLYSLNSVSKYYVP  107 (333)
Q Consensus        89 ~~~~~~~y~~t~~~~~l~~  107 (333)
                         +.+.|++|+.+..+.+
T Consensus        76 ---~~~~~~~t~~g~lL~d   91 (92)
T d1qzza1          76 ---QGRPLRPTRLGMLLAD   91 (92)
T ss_dssp             ----CCCCEECTTGGGGST
T ss_pred             ---CCceecccHHHHhccC
Confidence               2456888888877653

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.56  E-value=1.9e-15  Score=130.55  Aligned_cols=128  Identities=18%  Similarity=0.232  Sum_probs=98.7

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CCe------------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PCM------------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~gv------------------  235 (333)
                      ..+++.++ ..+..+|||||||+|..+..++..+.+ +++++|. +.+++.|++.    +.+                  
T Consensus        83 ~~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD  160 (254)
T d1xtpa_          83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD  160 (254)
T ss_dssp             HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred             HHHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccc
Confidence            45666666 667889999999999999998877655 7899999 8898887642    100                  


Q ss_pred             -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHH
Q 035738          236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLAT  310 (333)
Q Consensus       236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~  310 (333)
                           .++|++++++..++|++++++|+|||.++|.|.+......         ..+.     ..+...|+.++|+++|+
T Consensus       161 ~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~---------~~d~-----~d~~~~rs~~~~~~l~~  226 (254)
T d1xtpa_         161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVDK-----EDSSLTRSDIHYKRLFN  226 (254)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEET-----TTTEEEBCHHHHHHHHH
T ss_pred             eEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcc---------eecc-----cCCceeCCHHHHHHHHH
Confidence                 8899999999899999999999999999999987654211         1111     01334678999999999


Q ss_pred             hCCCCeeEEeec
Q 035738          311 GAGFSGISCERA  322 (333)
Q Consensus       311 ~aGf~~~~~~~~  322 (333)
                      ++||++++....
T Consensus       227 ~aGf~ii~~~~q  238 (254)
T d1xtpa_         227 ESGVRVVKEAFQ  238 (254)
T ss_dssp             HHTCCEEEEEEC
T ss_pred             HcCCEEEEEEee
Confidence            999999987653

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.8e-15  Score=126.83  Aligned_cols=119  Identities=18%  Similarity=0.248  Sum_probs=94.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC--------------------e---EE
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC--------------------M---WI  237 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g--------------------v---~v  237 (333)
                      ..+..+|||||||+|..+..+++..+. +++++|+ +.+++.|++.      ++                    |   .+
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~  136 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV  136 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCC-EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            456789999999999999999877764 7999999 8898877542      00                    1   88


Q ss_pred             EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCee
Q 035738          238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGI  317 (333)
Q Consensus       238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~  317 (333)
                      +|++++++..++|+++++.|+|||.+++.+...++...          ++.     ......|+.++|+++|+++||+++
T Consensus       137 l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~----------~~~-----~~~~~~~~~~~~~~l~~~aGf~ii  201 (222)
T d2ex4a1         137 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI----------LDD-----VDSSVCRDLDVVRRIICSAGLSLL  201 (222)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE----------EET-----TTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred             cccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccc----------ccc-----CCceeeCCHHHHHHHHHHcCCEEE
Confidence            89999988889999999999999999999987665310          000     012345689999999999999999


Q ss_pred             EEeec
Q 035738          318 SCERA  322 (333)
Q Consensus       318 ~~~~~  322 (333)
                      +....
T Consensus       202 ~~~~q  206 (222)
T d2ex4a1         202 AEERQ  206 (222)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            88764

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.53  E-value=5.2e-15  Score=129.27  Aligned_cols=144  Identities=15%  Similarity=0.215  Sum_probs=106.4

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC----e--------------
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC----M--------------  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g----v--------------  235 (333)
                      ...+++.+. +.++.+|||||||+|.++..++++++ .+++++|+ +..++.+++.   .+    +              
T Consensus        41 ~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~f  118 (280)
T d2fk8a1          41 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV  118 (280)
T ss_dssp             HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred             HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccch
Confidence            356777776 88999999999999999999888875 59999999 7777766432   11    0              


Q ss_pred             ------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcc-----ccccccchhhHHHhhCCCCCcCCHHH
Q 035738          236 ------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSI-----ESKSNSDSDVLMMIQSPGGKERTRHE  304 (333)
Q Consensus       236 ------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~-----~~~~~~~~d~~m~~~~~~g~~rt~~e  304 (333)
                            .++++++++.-..+|++++++|||||+++|.+.+..+......     ........++..-..+++|..++.++
T Consensus       119 D~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~  198 (280)
T d2fk8a1         119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEM  198 (280)
T ss_dssp             SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred             hhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchHh
Confidence                  5667788776679999999999999999999876554211000     00011122333333468999999999


Q ss_pred             HHHHHHhCCCCeeEEeecC
Q 035738          305 FMTLATGAGFSGISCERAI  323 (333)
Q Consensus       305 ~~~ll~~aGf~~~~~~~~~  323 (333)
                      +.+.++++||++.++...+
T Consensus       199 l~~~~e~aGf~v~~~~~~~  217 (280)
T d2fk8a1         199 MVEHGEKAGFTVPEPLSLR  217 (280)
T ss_dssp             HHHHHHHTTCBCCCCEECH
T ss_pred             hhhhHHhhccccceeeecc
Confidence            9999999999999887654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.8e-14  Score=123.58  Aligned_cols=132  Identities=13%  Similarity=0.081  Sum_probs=96.6

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC-e---------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC-M---------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g-v---------------  235 (333)
                      ..+.+.+. +.++.+|||||||+|..+..++++++ .+++++|+ +.+++.+++.      .+ +               
T Consensus        23 ~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~  100 (245)
T d1nkva_          23 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK  100 (245)
T ss_dssp             HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred             HHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCc
Confidence            34556665 88899999999999999999998876 79999999 8888876542      11 1               


Q ss_pred             -------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHH
Q 035738          236 -------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTL  308 (333)
Q Consensus       236 -------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~l  308 (333)
                             .++|++++..  ++|++++++|+|||++++.++.....+.....      ......  .......+..+|.++
T Consensus       101 fD~v~~~~~~~~~~d~~--~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~  170 (245)
T d1nkva_         101 CDVAACVGATWIAGGFA--GAEELLAQSLKPGGIMLIGEPYWRQLPATEEI------AQACGV--SSTSDFLTLPGLVGA  170 (245)
T ss_dssp             EEEEEEESCGGGTSSSH--HHHHHHTTSEEEEEEEEEEEEEETTCCSSHHH------HHTTTC--SCGGGSCCHHHHHHH
T ss_pred             eeEEEEEehhhccCCHH--HHHHHHHHHcCcCcEEEEEeccccCCCChHHH------HHHhcc--CCCcccCCHHHHHHH
Confidence                   5667777665  89999999999999999999876654322100      000000  112235688999999


Q ss_pred             HHhCCCCeeEEeec
Q 035738          309 ATGAGFSGISCERA  322 (333)
Q Consensus       309 l~~aGf~~~~~~~~  322 (333)
                      ++++||+++.++..
T Consensus       171 ~~~aG~~~v~~~~~  184 (245)
T d1nkva_         171 FDDLGYDVVEMVLA  184 (245)
T ss_dssp             HHTTTBCCCEEEEC
T ss_pred             HHHcCCEEEEEEeC
Confidence            99999998877544

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.49  E-value=1.6e-14  Score=123.01  Aligned_cols=131  Identities=16%  Similarity=0.290  Sum_probs=95.7

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------  235 (333)
                      -+++..+ +++..||||||||+|.++..++++.+  +++++|+ +.+++.|+++      +++                 
T Consensus         7 ~l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~f   83 (234)
T d1xxla_           7 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF   83 (234)
T ss_dssp             HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred             HHHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhccccccccccccccccccccccccc
Confidence            3556666 88999999999999999999999864  6899999 7888877542      111                 


Q ss_pred             ------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHH-HhhCCCCCcCCHHHHHHH
Q 035738          236 ------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLM-MIQSPGGKERTRHEFMTL  308 (333)
Q Consensus       236 ------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m-~~~~~~g~~rt~~e~~~l  308 (333)
                            .++|++++.+  ++|++++++|+|||++++.+...++.+.      +..+++... .......+..+..+|.++
T Consensus        84 D~v~~~~~l~~~~d~~--~~l~~~~r~LkpgG~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (234)
T d1xxla_          84 DIITCRYAAHHFSDVR--KAVREVARVLKQDGRFLLVDHYAPEDPV------LDEFVNHLNRLRDPSHVRESSLSEWQAM  155 (234)
T ss_dssp             EEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECBCSSHH------HHHHHHHHHHHHCTTCCCCCBHHHHHHH
T ss_pred             ceeeeeceeecccCHH--HHHHHHHHeeCCCcEEEEEEcCCCCCHH------HHHHHHHHHhhCCCcccccCCHHHHHHH
Confidence                  6677777665  8999999999999999999987654311      111222111 111123566789999999


Q ss_pred             HHhCCCCeeEEee
Q 035738          309 ATGAGFSGISCER  321 (333)
Q Consensus       309 l~~aGf~~~~~~~  321 (333)
                      ++++||.+.++..
T Consensus       156 ~~~~gf~~~~~~~  168 (234)
T d1xxla_         156 FSANQLAYQDIQK  168 (234)
T ss_dssp             HHHTTEEEEEEEE
T ss_pred             HHHCCCceeEEEE
Confidence            9999998766544

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.47  E-value=7e-14  Score=122.05  Aligned_cols=144  Identities=16%  Similarity=0.196  Sum_probs=102.6

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC----e--------------
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC----M--------------  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g----v--------------  235 (333)
                      ...+++.+. +.++.+|||||||.|..+..+++.++ ++++++++ +.-++.+++.   .|    +              
T Consensus        51 ~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~g-~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~f  128 (285)
T d1kpga_          51 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV  128 (285)
T ss_dssp             HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred             HHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcCC-cceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc
Confidence            346677776 88999999999999999999999985 89999999 6655554431   11    1              


Q ss_pred             ------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCC-----ccccccccchhhHHHhhCCCCCcCCHHH
Q 035738          236 ------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNT-----SIESKSNSDSDVLMMIQSPGGKERTRHE  304 (333)
Q Consensus       236 ------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~-----~~~~~~~~~~d~~m~~~~~~g~~rt~~e  304 (333)
                            .++.++..+.-..++++++++|+|||++++.+.+...+...     +.........++..-..+++|..++.++
T Consensus       129 D~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~  208 (285)
T d1kpga_         129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPM  208 (285)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred             cceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhh
Confidence                  33444554544589999999999999999999875432110     0000011122333333468999999999


Q ss_pred             HHHHHHhCCCCeeEEeecC
Q 035738          305 FMTLATGAGFSGISCERAI  323 (333)
Q Consensus       305 ~~~ll~~aGf~~~~~~~~~  323 (333)
                      +.++++++||+++++...+
T Consensus       209 ~~~~~e~agf~v~~~~~~~  227 (285)
T d1kpga_         209 VQECASANGFTVTRVQSLQ  227 (285)
T ss_dssp             HHHHHHTTTCEEEEEEECH
T ss_pred             HHHHHHHhchhhcccccch
Confidence            9999999999999987764

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.46  E-value=4.4e-14  Score=117.95  Aligned_cols=118  Identities=15%  Similarity=0.164  Sum_probs=83.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--------------C-C---e----EEEccCChhHH
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--------------P-C---M----WILHDWNDEHC  246 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~-g---v----~vLh~~~~~~~  246 (333)
                      +..+|||||||+|.++..+.      +.+++|+ +.+++.+++.              + +   +    .+||++++.. 
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~~-  108 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPE-  108 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHH-
T ss_pred             CCCeEEEECCCCcccccccc------eEEEEeCChhhcccccccccccccccccccccccccccccccccccccccccc-
Confidence            35589999999999988773      3588999 8899887653              0 1   0    8888888765 


Q ss_pred             HHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEee
Q 035738          247 LKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCER  321 (333)
Q Consensus       247 ~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~  321 (333)
                       ++|++++++|+|||++++.++.....     .............. ..+...+|.++|.++|+++||+++++..
T Consensus       109 -~~l~~~~~~L~pgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~s~~~l~~~l~~~Gf~~i~v~~  176 (208)
T d1vlma_         109 -RALKEAYRILKKGGYLIVGIVDRESF-----LGREYEKNKEKSVF-YKNARFFSTEELMDLMRKAGFEEFKVVQ  176 (208)
T ss_dssp             -HHHHHHHHHEEEEEEEEEEEECSSSH-----HHHHHHHTTTC-CC-STTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             -cchhhhhhcCCCCceEEEEecCCcch-----hHHhhhhccccccc-cccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence             89999999999999999998754321     00000000000000 1234567899999999999999998765

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.43  E-value=2.1e-13  Score=119.28  Aligned_cols=147  Identities=18%  Similarity=0.291  Sum_probs=104.2

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC----------------
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC----------------  234 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g----------------  234 (333)
                      ...+++.+. +.++.+|||||||.|.++..++++++ ++++++++ +..++.+++.      .+                
T Consensus        50 ~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~f  127 (291)
T d1kpia_          50 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV  127 (291)
T ss_dssp             HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred             HHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccccc
Confidence            346777776 88999999999999999999999986 69999999 6655554431      11                


Q ss_pred             --e---EEEccCCh-------hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccc-----cccccchhhHHHhhCCCC
Q 035738          235 --M---WILHDWND-------EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIE-----SKSNSDSDVLMMIQSPGG  297 (333)
Q Consensus       235 --v---~vLh~~~~-------~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~-----~~~~~~~d~~m~~~~~~g  297 (333)
                        |   .++.++++       +.-..++++++++|+|||++++...+.++.......     .......++..-..+++|
T Consensus       128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg  207 (291)
T d1kpia_         128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG  207 (291)
T ss_dssp             SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred             ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCC
Confidence              1   33434443       234589999999999999999999887653111000     001112233333346899


Q ss_pred             CcCCHHHHHHHHHhCCCCeeEEeecCCce
Q 035738          298 KERTRHEFMTLATGAGFSGISCERAIGNL  326 (333)
Q Consensus       298 ~~rt~~e~~~ll~~aGf~~~~~~~~~~~~  326 (333)
                      ..++.+++...++++||++..+...+.++
T Consensus       208 ~lps~~~~~~~~e~~gl~v~~~~~~~~hY  236 (291)
T d1kpia_         208 RLPRISQVDYYSSNAGWKVERYHRIGANY  236 (291)
T ss_dssp             CCCCHHHHHHHHHHHTCEEEEEEECGGGH
T ss_pred             CCCCHHHHHhhhcccccccceeeeccccH
Confidence            99999999999999999999888775443

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.42  E-value=1.6e-13  Score=116.16  Aligned_cols=119  Identities=11%  Similarity=0.062  Sum_probs=88.8

Q ss_pred             hccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC----CCCe---------------------EE
Q 035738          184 SYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP----HPCM---------------------WI  237 (333)
Q Consensus       184 ~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~gv---------------------~v  237 (333)
                      .++ +.++.+|||+|||+|.++..+++..|+.+++++|+ |.+++.+++    .+++                     .+
T Consensus        69 ~l~-ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i  147 (230)
T d1g8sa_          69 VMP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVI  147 (230)
T ss_dssp             CCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred             hCC-CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEe
Confidence            344 77899999999999999999999999999999999 888776543    2221                     33


Q ss_pred             EccCC-hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCe
Q 035738          238 LHDWN-DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSG  316 (333)
Q Consensus       238 Lh~~~-~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~  316 (333)
                      .+++. .++...+++++++.|||||++++.+.....+...+                    .....+++.+.|+++||++
T Consensus       148 ~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~--------------------~~~~~~e~~~~L~~aGF~i  207 (230)
T d1g8sa_         148 YEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKD--------------------PKEIFKEQKEILEAGGFKI  207 (230)
T ss_dssp             EECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSC--------------------HHHHHHHHHHHHHHHTEEE
T ss_pred             eccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCC--------------------HHHHHHHHHHHHHHcCCEE
Confidence            34332 23445789999999999999999887554332110                    1112468899999999999


Q ss_pred             eEEeecC
Q 035738          317 ISCERAI  323 (333)
Q Consensus       317 ~~~~~~~  323 (333)
                      ++.....
T Consensus       208 ve~idL~  214 (230)
T d1g8sa_         208 VDEVDIE  214 (230)
T ss_dssp             EEEEECT
T ss_pred             EEEecCC
Confidence            9998764

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.38  E-value=1.8e-13  Score=119.77  Aligned_cols=141  Identities=16%  Similarity=0.157  Sum_probs=92.9

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC----C-Ce-----------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH----P-CM-----------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~----~-gv-----------------  235 (333)
                      .+++.+..+.++.+|||||||+|..+..+++.+|. .+++++|+ +.+++.|+++    + ++                 
T Consensus        17 ~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD   96 (281)
T d2gh1a1          17 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD   96 (281)
T ss_dssp             HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred             HHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCce
Confidence            34444433678899999999999999999998874 78999999 8888877642    0 11                 


Q ss_pred             -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC-------CCC-ccccccccchhhHHHhhCCCCCcCC-
Q 035738          236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEV-------PNT-SIESKSNSDSDVLMMIQSPGGKERT-  301 (333)
Q Consensus       236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~-------~~~-~~~~~~~~~~d~~m~~~~~~g~~rt-  301 (333)
                           .+||+++++.  ++|++++++|||||++++.|+.....       ... ........+...........+.... 
T Consensus        97 ~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  174 (281)
T d2gh1a1          97 IAICHAFLLHMTTPE--TMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNI  174 (281)
T ss_dssp             EEEEESCGGGCSSHH--HHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTTG
T ss_pred             EEEEehhhhcCCCHH--HHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCCH
Confidence                 7888888776  89999999999999999999642111       000 0000111111111111112333222 


Q ss_pred             HHHHHHHHHhCCCCeeEEeec
Q 035738          302 RHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       302 ~~e~~~ll~~aGf~~~~~~~~  322 (333)
                      ..++..+++++||+.+++...
T Consensus       175 ~~~l~~~l~eaGf~~i~~~~~  195 (281)
T d2gh1a1         175 GMKIPIYLSELGVKNIECRVS  195 (281)
T ss_dssp             GGTHHHHHHHTTCEEEEEEEC
T ss_pred             HHHHHHHHHHcCCeEEEEEEe
Confidence            346888999999999876543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.30  E-value=1.1e-12  Score=112.47  Aligned_cols=86  Identities=13%  Similarity=0.233  Sum_probs=67.0

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CCe------------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PCM------------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~gv------------------  235 (333)
                      .++..+. ..+..+|||||||+|..+..++++.  .+++++|+ +.+++.|++.     ..+                  
T Consensus        32 ~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~  108 (251)
T d1wzna1          32 EIFKEDA-KREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA  108 (251)
T ss_dssp             HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred             HHHHHhc-CCCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccccccccchheehhhhhcccccccch
Confidence            3444444 6677899999999999999999865  47999999 8899887642     111                  


Q ss_pred             -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                           .++++++.++..++|+++++.|+|||++++...
T Consensus       109 I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~  146 (251)
T d1wzna1         109 VTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (251)
T ss_dssp             EEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence                 344567777788999999999999999987543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.28  E-value=3.6e-12  Score=107.57  Aligned_cols=127  Identities=16%  Similarity=0.136  Sum_probs=85.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--CCe----------------------EEEccCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--PCM----------------------WILHDWN  242 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~gv----------------------~vLh~~~  242 (333)
                      +..+.+|||||||+|.++..++++..  +++++|+ +.+++.+++.  .++                      .+||+++
T Consensus        18 ~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~   95 (225)
T d2p7ia1          18 FFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID   95 (225)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred             hCCCCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecC
Confidence            33567899999999999999988764  5899999 8888887642  111                      7888888


Q ss_pred             hhHHHHHHHHHH-HhCCCCcEEEEEeeecCCCCCC-----ccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCe
Q 035738          243 DEHCLKLLKNCY-KSIPEDGKVIAVELMLPEVPNT-----SIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSG  316 (333)
Q Consensus       243 ~~~~~~lL~~~~-~~L~pgG~l~i~e~~~~~~~~~-----~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~  316 (333)
                      ++.  .+|++++ ++|+|||.+++.-+........     ...............  ...-..++.++++++++++||++
T Consensus        96 d~~--~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~~l~~~l~~~Gf~i  171 (225)
T d2p7ia1          96 DPV--ALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFA--HGHRCTYALDTLERDASRAGLQV  171 (225)
T ss_dssp             SHH--HHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHH--TTCCCCCCHHHHHHHHHHTTCEE
T ss_pred             CHH--HHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccc--eeeeeccCHHHHHHHHHHCCCEE
Confidence            775  8899998 7899999999986632210000     000000000000111  11334678999999999999998


Q ss_pred             eEEe
Q 035738          317 ISCE  320 (333)
Q Consensus       317 ~~~~  320 (333)
                      ++..
T Consensus       172 ~~~~  175 (225)
T d2p7ia1         172 TYRS  175 (225)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8754

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.28  E-value=5.6e-12  Score=103.57  Aligned_cols=89  Identities=7%  Similarity=0.007  Sum_probs=72.0

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---C---------------C-------
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---P---------------C-------  234 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~---------------g-------  234 (333)
                      +.+.+. ..++.||||||||+|..+..|+++  +.+++++|+ +.+++.|++.   .               .       
T Consensus        12 ~~~~l~-~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   88 (201)
T d1pjza_          12 YWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD   88 (201)
T ss_dssp             HHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred             HHHHcC-CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccc
Confidence            344455 778899999999999999999987  578999999 8899887642   0               0       


Q ss_pred             --------------e---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738          235 --------------M---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPE  272 (333)
Q Consensus       235 --------------v---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~  272 (333)
                                    +   .++|.++++.....++++++.|||||++++.......
T Consensus        89 ~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~  143 (201)
T d1pjza_          89 FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQ  143 (201)
T ss_dssp             CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCS
T ss_pred             ccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccccc
Confidence                          0   5778888888889999999999999999887765443

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.27  E-value=1.2e-11  Score=105.77  Aligned_cols=129  Identities=16%  Similarity=0.202  Sum_probs=92.0

Q ss_pred             HHHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CCe-----
Q 035738          165 HFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PCM-----  235 (333)
Q Consensus       165 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~gv-----  235 (333)
                      .|....+..+......+.+.   ..++.+|||||||+|.++..+++..  .+++++|+ |.+++.|+++   .++     
T Consensus        98 aFGTG~H~TT~l~l~~l~~~---~~~g~~VLDiGcGsG~l~i~aa~~g--~~V~gvDis~~av~~A~~na~~n~~~~~~~  172 (254)
T d2nxca1          98 AFGTGHHETTRLALKALARH---LRPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVRPRFL  172 (254)
T ss_dssp             ----CCSHHHHHHHHHHHHH---CCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHHTTCCCEEE
T ss_pred             ccCccccchhhHHHHHHHhh---cCccCEEEEcccchhHHHHHHHhcC--CEEEEEECChHHHHHHHHHHHHcCCceeEE
Confidence            45555555555545444332   3467899999999999998887654  57999999 8999888753   111     


Q ss_pred             --------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCC
Q 035738          236 --------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERT  301 (333)
Q Consensus       236 --------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt  301 (333)
                                    .|+.++..+...+++++++++|+|||++++.+....                             .
T Consensus       173 ~~d~~~~~~~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilSgil~~-----------------------------~  223 (254)
T d2nxca1         173 EGSLEAALPFGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKD-----------------------------R  223 (254)
T ss_dssp             ESCHHHHGGGCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------G
T ss_pred             eccccccccccccchhhhccccccHHHHHHHHHHhcCCCcEEEEEecchh-----------------------------h
Confidence                          555556666677899999999999999998654211                             1


Q ss_pred             HHHHHHHHHhCCCCeeEEeecCCcee
Q 035738          302 RHEFMTLATGAGFSGISCERAIGNLW  327 (333)
Q Consensus       302 ~~e~~~ll~~aGf~~~~~~~~~~~~~  327 (333)
                      .+++.+.++++||++++....+.+..
T Consensus       224 ~~~v~~~~~~~Gf~~~~~~~~~~Wv~  249 (254)
T d2nxca1         224 APLVREAMAGAGFRPLEEAAEGEWVL  249 (254)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEETTEEE
T ss_pred             HHHHHHHHHHCCCEEEEEEEECCEEE
Confidence            46788899999999999887766543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=8.5e-12  Score=108.68  Aligned_cols=135  Identities=13%  Similarity=0.091  Sum_probs=87.0

Q ss_pred             hhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHH----HCCCC--eEEEeec-hhHhhhCCCC-------CC------
Q 035738          175 SLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITT----KYPYI--KGINFDL-PHVIEHVPPH-------PC------  234 (333)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~----~~p~~--~~~~~D~-~~~~~~a~~~-------~g------  234 (333)
                      ....+.++..+...+...+|||||||+|.++..+++    .+++.  +++++|. +.+++.+++.       ++      
T Consensus        25 ~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~  104 (280)
T d1jqea_          25 DKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWH  104 (280)
T ss_dssp             HHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEE
T ss_pred             HHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccch
Confidence            334455555554244556899999999998776654    46665  4689998 7787765421       10      


Q ss_pred             ----------------------e---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhH
Q 035738          235 ----------------------M---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVL  289 (333)
Q Consensus       235 ----------------------v---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~  289 (333)
                                            |   ++||++++..  ++|+++++.|+|||.++|.....+.    .+ ..  .+..+.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~--~~l~~l~~~LkpgG~l~i~~~~~~~----~~-~~--l~~~~~  175 (280)
T d1jqea_         105 KETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGTNAKMLIIVVSGSS----GW-DK--LWKKYG  175 (280)
T ss_dssp             CSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEEECTTS----HH-HH--HHHHHG
T ss_pred             hhhhhhhcchhcccCCCCceeEEEEccceecCCCHH--HHHHHHHhhCCCCCEEEEEEecCcc----hH-HH--HHHHHH
Confidence                                  0   7888888765  8999999999999999998763211    00 00  000110


Q ss_pred             -HHhhCCCCCcCCHHHHHHHHHhCCCCeeE
Q 035738          290 -MMIQSPGGKERTRHEFMTLATGAGFSGIS  318 (333)
Q Consensus       290 -m~~~~~~g~~rt~~e~~~ll~~aGf~~~~  318 (333)
                       ..........++.++|.++|++.||+.+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~L~~~G~~~~~  205 (280)
T d1jqea_         176 SRFPQDDLCQYITSDDLTQMLDNLGLKYEC  205 (280)
T ss_dssp             GGSCCCTTSCCCCHHHHHHHHHHHTCCEEE
T ss_pred             HhcCCCcccccCCHHHHHHHHHHCCCceEE
Confidence             10001124457889999999999997543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.22  E-value=1.9e-12  Score=108.77  Aligned_cols=81  Identities=12%  Similarity=0.137  Sum_probs=66.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CC-------------------e----EEE
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PC-------------------M----WIL  238 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~g-------------------v----~vL  238 (333)
                      +++..+|||||||+|.++..+++.  +.+++++|+ +.+++.|++.     +.                   +    .++
T Consensus        35 l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l  112 (226)
T d1ve3a1          35 MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSI  112 (226)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCG
T ss_pred             cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecch
Confidence            346679999999999999999875  468999999 8899877542     00                   0    788


Q ss_pred             ccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          239 HDWNDEHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       239 h~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                      |++++++..++|+++.++|+|||+++|.....
T Consensus       113 ~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~~  144 (226)
T d1ve3a1         113 VHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL  144 (226)
T ss_dssp             GGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             hhCChhHHHHHHHHHHHHcCcCcEEEEEEcCc
Confidence            88888788899999999999999999887643

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.21  E-value=1.1e-11  Score=102.33  Aligned_cols=87  Identities=15%  Similarity=0.151  Sum_probs=68.6

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe------------------
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM------------------  235 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv------------------  235 (333)
                      ++.... +-.+.+|||||||+|..+..++++.  .+++++|+ +.+++.+++.      +++                  
T Consensus        22 ~~~~~~-~~~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~   98 (198)
T d2i6ga1          22 VLAAAK-VVAPGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDF   98 (198)
T ss_dssp             HHHHHT-TSCSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEE
T ss_pred             HHHHcc-cCCCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccE
Confidence            333333 4455699999999999999999875  57899999 7788765431      111                  


Q ss_pred             ----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                          .++|++++++..++|++++++|+|||++++.....
T Consensus        99 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  137 (198)
T d2i6ga1          99 ILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD  137 (198)
T ss_dssp             EEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred             EEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence                78888888888899999999999999999987753

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=8.4e-13  Score=113.53  Aligned_cols=120  Identities=12%  Similarity=-0.048  Sum_probs=83.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----C-----------------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----P-----------------------------  233 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-----------------------------  233 (333)
                      ..++.+|||||||+|.++..++.... .+++++|+ +.+++.|++.    +                             
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~~~-~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  127 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHhHHHHhcccc-CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence            44678999999999988776655442 36999999 7888766421    0                             


Q ss_pred             -----------------------C-e------EEEccCC--hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccc
Q 035738          234 -----------------------C-M------WILHDWN--DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESK  281 (333)
Q Consensus       234 -----------------------g-v------~vLh~~~--~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~  281 (333)
                                             + .      .+||+.+  .++...+++++++.|||||++++.+......-       
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~-------  200 (257)
T d2a14a1         128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSY-------  200 (257)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE-------
T ss_pred             hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccc-------
Confidence                                   0 0      5556554  34566899999999999999999887543210       


Q ss_pred             cccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738          282 SNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERA  322 (333)
Q Consensus       282 ~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  322 (333)
                        ...+..     ......+.++|+++|++|||+++++...
T Consensus       201 --~~~~~~-----~~~~~~~~~~~~~~l~~aGf~v~~~~~~  234 (257)
T d2a14a1         201 --MVGKRE-----FSCVALEKGEVEQAVLDAGFDIEQLLHS  234 (257)
T ss_dssp             --EETTEE-----EECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             --eecccc-----ccccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence              000000     0122457999999999999998887543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.18  E-value=1.9e-11  Score=101.74  Aligned_cols=85  Identities=14%  Similarity=0.107  Sum_probs=68.7

Q ss_pred             ccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CCe---------------------EEE
Q 035738          185 YKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PCM---------------------WIL  238 (333)
Q Consensus       185 ~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~gv---------------------~vL  238 (333)
                      ++ +.++.+|||||||+|.++..+++..|+.+++++|+ |.+++.+++.    .++                     .++
T Consensus        52 l~-lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~  130 (209)
T d1nt2a_          52 LK-LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIY  130 (209)
T ss_dssp             CC-CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred             CC-CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEE
Confidence            45 77899999999999999999999999999999999 8898876542    111                     455


Q ss_pred             ccCC-hhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          239 HDWN-DEHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       239 h~~~-~~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                      |++. ..+...+++++++.|||||++++.+...
T Consensus       131 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  163 (209)
T d1nt2a_         131 QDIAQKNQIEILKANAEFFLKEKGEVVIMVKAR  163 (209)
T ss_dssp             ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             ecccChhhHHHHHHHHHHHhccCCeEEEEEEcc
Confidence            6653 3345688999999999999999987643

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.17  E-value=1.7e-11  Score=105.55  Aligned_cols=124  Identities=14%  Similarity=0.122  Sum_probs=93.4

Q ss_pred             HHHHHhhhhhh----hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC---CC--
Q 035738          166 FNTVMYNYTSL----VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH---PC--  234 (333)
Q Consensus       166 f~~~m~~~~~~----~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---~g--  234 (333)
                      |...|...+..    .+..++..++ ..++.+|||+|||+|.++..+++.. |+.+++++|. +.+++.|+++   .+  
T Consensus        76 ~~~~~~r~~qiiypkd~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~  154 (266)
T d1o54a_          76 EIMNMKRRTQIVYPKDSSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI  154 (266)
T ss_dssp             HHHTCCC-CCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG
T ss_pred             HHhhccCCccccchHHHHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc
Confidence            33445444443    2345666666 8899999999999999999999875 8899999999 8999888753   11  


Q ss_pred             ---------e----------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCC
Q 035738          235 ---------M----------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSP  295 (333)
Q Consensus       235 ---------v----------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~  295 (333)
                               +          .++++.+++.  ++|+++.++|||||++++..++..                        
T Consensus       155 ~~v~~~~~d~~~~~~~~~~D~V~~d~p~p~--~~l~~~~~~LKpGG~lv~~~P~~~------------------------  208 (266)
T d1o54a_         155 ERVTIKVRDISEGFDEKDVDALFLDVPDPW--NYIDKCWEALKGGGRFATVCPTTN------------------------  208 (266)
T ss_dssp             GGEEEECCCGGGCCSCCSEEEEEECCSCGG--GTHHHHHHHEEEEEEEEEEESSHH------------------------
T ss_pred             cCcEEEeccccccccccceeeeEecCCCHH--HHHHHHHhhcCCCCEEEEEeCccc------------------------
Confidence                     1          7888888887  899999999999999998765321                        


Q ss_pred             CCCcCCHHHHHHHHHhCCCCeeEEee
Q 035738          296 GGKERTRHEFMTLATGAGFSGISCER  321 (333)
Q Consensus       296 ~g~~rt~~e~~~ll~~aGf~~~~~~~  321 (333)
                           ..++..+.|++.||..+++..
T Consensus       209 -----Qv~~~~~~l~~~gF~~i~~~E  229 (266)
T d1o54a_         209 -----QVQETLKKLQELPFIRIEVWE  229 (266)
T ss_dssp             -----HHHHHHHHHHHSSEEEEEEEC
T ss_pred             -----HHHHHHHHHHHCCceeEEEEE
Confidence                 123556777888998777654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=5.3e-12  Score=106.82  Aligned_cols=116  Identities=11%  Similarity=0.091  Sum_probs=74.4

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CCe--------------------EEE----
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PCM--------------------WIL----  238 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~gv--------------------~vL----  238 (333)
                      ..+.+|||||||+|..+..+++..+ .+++++|+ |.+++.|++.     .++                    .++    
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~  130 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  130 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence            3567999999999999999988665 47899999 8899887642     111                    111    


Q ss_pred             ----ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCC
Q 035738          239 ----HDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGF  314 (333)
Q Consensus       239 ----h~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf  314 (333)
                          +...-.+...++++++++|||||++++.+.......       .....+        .......+.+...|.++||
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~-------~~~~~~--------~~~~~~~~~~~~~l~~agF  195 (229)
T d1zx0a1         131 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGEL-------MKSKYS--------DITIMFEETQVPALLEAGF  195 (229)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHH-------TTTTCS--------CHHHHHHHHTHHHHHHTTC
T ss_pred             ccccccccccCHHHHHHHHHHHcCCCcEEEEEecCCcchh-------hhhhhh--------hcchhhhhHHHHHHHHCCC
Confidence                111122334799999999999999987554221100       000000        1111124566778889999


Q ss_pred             CeeEEe
Q 035738          315 SGISCE  320 (333)
Q Consensus       315 ~~~~~~  320 (333)
                      +..++.
T Consensus       196 ~~~~i~  201 (229)
T d1zx0a1         196 RRENIR  201 (229)
T ss_dssp             CGGGEE
T ss_pred             eeEEEE
Confidence            877654

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.10  E-value=1.7e-10  Score=96.88  Aligned_cols=125  Identities=14%  Similarity=0.060  Sum_probs=87.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCC----CCCe---------------------EEEcc
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPP----HPCM---------------------WILHD  240 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~~gv---------------------~vLh~  240 (333)
                      +.++.+|||+|||+|.++..+++.- |+-+++++|+ |.+++.+++    ..++                     .++++
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d  150 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED  150 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEE
Confidence            7789999999999999999999974 8899999999 888876643    2211                     56677


Q ss_pred             CCh-hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEE
Q 035738          241 WND-EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISC  319 (333)
Q Consensus       241 ~~~-~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~  319 (333)
                      ++. ++...+++++++.|+|||+++|.......+...                    .......+..++ .+.||++++.
T Consensus       151 ~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~--------------------~~~~v~~~v~~l-~~~gf~iie~  209 (227)
T d1g8aa_         151 VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTK--------------------EPEQVFREVERE-LSEYFEVIER  209 (227)
T ss_dssp             CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTS--------------------CHHHHHHHHHHH-HHTTSEEEEE
T ss_pred             ccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCC--------------------CHHHHHHHHHHH-HHcCCEEEEE
Confidence            653 345679999999999999999876533221110                    000012233444 4679999998


Q ss_pred             eecCC---ceeEEEEeC
Q 035738          320 ERAIG---NLWVMEFYK  333 (333)
Q Consensus       320 ~~~~~---~~~vie~~~  333 (333)
                      .....   .+.++.++|
T Consensus       210 i~L~p~~~~H~~vv~rK  226 (227)
T d1g8aa_         210 LNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             EECTTTSSSEEEEEEEC
T ss_pred             EcCCCCCCceEEEEEEe
Confidence            87643   367777765

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.1e-10  Score=98.48  Aligned_cols=109  Identities=8%  Similarity=-0.086  Sum_probs=81.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----------------------CCe--------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----------------------PCM--------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------------------~gv--------  235 (333)
                      .....||||+|||+|..+..|++.  +.+++++|+ +.+++.+++.                       ..+        
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  120 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF  120 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence            567789999999999999999985  468999999 8888765320                       000        


Q ss_pred             ----------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCC-
Q 035738          236 ----------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGK-  298 (333)
Q Consensus       236 ----------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~-  298 (333)
                                      .++|.++++.....++++.++|+|||++++.....+....                    .|. 
T Consensus       121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~--------------------~gpp  180 (229)
T d2bzga1         121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKH--------------------PGPP  180 (229)
T ss_dssp             GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTC--------------------CCSS
T ss_pred             hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCC--------------------CCCC
Confidence                            5668888888889999999999999998888776543211                    111 


Q ss_pred             -cCCHHHHHHHHHhCCCCeeEE
Q 035738          299 -ERTRHEFMTLATGAGFSGISC  319 (333)
Q Consensus       299 -~rt~~e~~~ll~~aGf~~~~~  319 (333)
                       ..+.+++.++|.. +|.+..+
T Consensus       181 ~~~~~~el~~lf~~-~~~i~~l  201 (229)
T d2bzga1         181 FYVPHAEIERLFGK-ICNIRCL  201 (229)
T ss_dssp             CCCCHHHHHHHHTT-TEEEEEE
T ss_pred             CCCCHHHHHHHhcC-CCEEEEE
Confidence             2478899999965 6665443

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=3e-11  Score=104.20  Aligned_cols=118  Identities=10%  Similarity=0.012  Sum_probs=80.4

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------------------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------------------------------  232 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------------------  232 (333)
                      ..++.+|||||||+|.+....+..+.. +++++|. +.+++.+++.                                  
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCCcEEEEeccCCCHHHHHHhcccCC-eEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence            456789999999999776544444433 7999999 8888765420                                  


Q ss_pred             ------------------------CC-e------EEEccCC--hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccc
Q 035738          233 ------------------------PC-M------WILHDWN--DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIE  279 (333)
Q Consensus       233 ------------------------~g-v------~vLh~~~--~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~  279 (333)
                                              ++ .      ++||..+  .++-.++|+++++.|||||.+++.+......      
T Consensus       131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~------  204 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW------  204 (263)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCE------
T ss_pred             hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcc------
Confidence                                    00 0      5666654  2345689999999999999999998864321      


Q ss_pred             cccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEe
Q 035738          280 SKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCE  320 (333)
Q Consensus       280 ~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~  320 (333)
                          ........    ..-..+.++++++|+++||+++++.
T Consensus       205 ----~~~~~~~~----~~~~~t~e~v~~~l~~aGf~v~~~~  237 (263)
T d2g72a1         205 ----YLAGEARL----TVVPVSEEEVREALVRSGYKVRDLR  237 (263)
T ss_dssp             ----EEETTEEE----ECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             ----cccCCccc----ccCCCCHHHHHHHHHHCCCeEEEEE
Confidence                00000000    1123589999999999999987654

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=3.7e-11  Score=102.02  Aligned_cols=77  Identities=19%  Similarity=0.258  Sum_probs=62.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---------------C-C----e----EEEccCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---------------P-C----M----WILHDWN  242 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~-g----v----~vLh~~~  242 (333)
                      .....+|||||||+|.++..+++.  ..+++++|+ +.+++.|++.               + +    |    .++|+++
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~  117 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE  117 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred             cCCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhh
Confidence            446779999999999999999876  468999999 8899887652               0 1    1    4667777


Q ss_pred             hhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          243 DEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       243 ~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      |.+  ++|+++++.|+|||.+++..+
T Consensus       118 d~~--~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         118 NKD--KAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             CHH--HHHHHHHHHEEEEEEEEEEEE
T ss_pred             hHH--HHHHHHHhhcCcCcEEEEEEC
Confidence            776  799999999999999988764

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.02  E-value=9.4e-11  Score=99.69  Aligned_cols=87  Identities=10%  Similarity=-0.007  Sum_probs=67.2

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC-------CCe--------------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH-------PCM--------------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~gv--------------  235 (333)
                      ..++..++ ..++.+|||+|||+|.++..+++. .|+.+++++|. +.+++.|+++       .++              
T Consensus        75 ~~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~  153 (250)
T d1yb2a1          75 SYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ  153 (250)
T ss_dssp             ------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred             HHHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccc
Confidence            34555555 788999999999999999999986 68899999999 7888877642       111              


Q ss_pred             ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                         .|+.+.+++.  .+|++++++|||||++++..+
T Consensus       154 ~fD~V~ld~p~p~--~~l~~~~~~LKpGG~lv~~~P  187 (250)
T d1yb2a1         154 MYDAVIADIPDPW--NHVQKIASMMKPGSVATFYLP  187 (250)
T ss_dssp             CEEEEEECCSCGG--GSHHHHHHTEEEEEEEEEEES
T ss_pred             eeeeeeecCCchH--HHHHHHHHhcCCCceEEEEeC
Confidence               5666777776  789999999999999998655

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=2.6e-10  Score=98.44  Aligned_cols=79  Identities=19%  Similarity=0.238  Sum_probs=63.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CCe------------------EEEccCChhHHH
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PCM------------------WILHDWNDEHCL  247 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~gv------------------~vLh~~~~~~~~  247 (333)
                      ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++. +++                  .|++.+...   
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~---  158 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC---  158 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC---
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHH---
Confidence            34678999999999999999999999999999999 8888877642 221                  455444433   


Q ss_pred             HHHHHHHHhCCCCcEEEEEeeec
Q 035738          248 KLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       248 ~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                       .+++++++|||||++++..+..
T Consensus       159 -~~~e~~rvLkpgG~l~~~~p~~  180 (268)
T d1p91a_         159 -KAEELARVVKPGGWVITATPGP  180 (268)
T ss_dssp             -CHHHHHHHEEEEEEEEEEEECT
T ss_pred             -HHHHHHHHhCCCcEEEEEeeCC
Confidence             2678999999999999998743

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=1.7e-10  Score=100.92  Aligned_cols=78  Identities=15%  Similarity=0.164  Sum_probs=59.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---------------------------C-C----
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---------------------------P-C----  234 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------------~-g----  234 (333)
                      ..+..+|||||||+|..+..|+++  +.+++++|+ +.+++.|++.                           + +    
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd  131 (292)
T d1xvaa_          54 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD  131 (292)
T ss_dssp             HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred             hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCce
Confidence            345679999999999999999987  468999999 8898876531                           0 0    


Q ss_pred             -e----EEEccCCh-----hHHHHHHHHHHHhCCCCcEEEEEe
Q 035738          235 -M----WILHDWND-----EHCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       235 -v----~vLh~~~~-----~~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                       |    .+++++++     ++..++|++++++|+|||++++.-
T Consensus       132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence             1    34555543     456789999999999999988743

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.94  E-value=3e-10  Score=97.13  Aligned_cols=80  Identities=15%  Similarity=0.062  Sum_probs=62.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe------------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM------------------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv------------------------  235 (333)
                      .++..+|||||||+|..+..+++... .+++++|+ +.+++.|++.       .++                        
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~  100 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ  100 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence            45678999999999999999988654 37999999 8888877531       011                        


Q ss_pred             EEEccC--ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          236 WILHDW--NDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 ~vLh~~--~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      .++|++  +.++..++|+++.+.|+|||++++..+
T Consensus       101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~  135 (252)
T d1ri5a_         101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  135 (252)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence            456665  445677899999999999999988654

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=4.5e-10  Score=101.65  Aligned_cols=95  Identities=11%  Similarity=0.173  Sum_probs=73.4

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--------------CC--------
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--------------PC--------  234 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~g--------  234 (333)
                      +..+++.++ +.+..+|||||||+|..+..+++.++..+++|+|+ +.+++.|++.              .+        
T Consensus       205 i~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~  283 (406)
T d1u2za_         205 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  283 (406)
T ss_dssp             HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence            445667676 88889999999999999999999999889999999 8888877531              00        


Q ss_pred             ----------------eEEEc-cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 035738          235 ----------------MWILH-DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEV  273 (333)
Q Consensus       235 ----------------v~vLh-~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~  273 (333)
                                      +...+ ..-+++..+.|+++++.|||||+|++.+.+.+..
T Consensus       284 ~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~~~~~  339 (406)
T d1u2za_         284 SFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSLT  339 (406)
T ss_dssp             CSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             chhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEecccCCCc
Confidence                            01112 2234556689999999999999999988776543

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.92  E-value=9e-10  Score=90.85  Aligned_cols=76  Identities=21%  Similarity=0.385  Sum_probs=58.2

Q ss_pred             CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe--------------------EEEccCChh
Q 035738          192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM--------------------WILHDWNDE  244 (333)
Q Consensus       192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv--------------------~vLh~~~~~  244 (333)
                      -.|||||||+|.++..+++.+|+..++++|+ +.++..+.+.      +++                    .|...++|+
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdP  112 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDP  112 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCC
T ss_pred             CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccccc
Confidence            3699999999999999999999999999998 7766655321      222                    344444433


Q ss_pred             H-----------HHHHHHHHHHhCCCCcEEEEEe
Q 035738          245 H-----------CLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       245 ~-----------~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      .           ...+|+.+.+.|+|||.|++..
T Consensus       113 w~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         113 WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            1           1479999999999999998753

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.91  E-value=1.4e-09  Score=89.16  Aligned_cols=84  Identities=17%  Similarity=0.254  Sum_probs=62.7

Q ss_pred             HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--------CCe----------------
Q 035738          181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--------PCM----------------  235 (333)
Q Consensus       181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~gv----------------  235 (333)
                      +++.++ ..+..+|||||||+|.++..+++.++  +++++|+ +.+++.++++        ..+                
T Consensus        44 Li~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~f  120 (194)
T d1dusa_          44 LVENVV-VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKY  120 (194)
T ss_dssp             HHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCE
T ss_pred             HHHhCC-cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCc
Confidence            455565 66788999999999999999998877  5788898 7888777542        111                


Q ss_pred             -EEEcc----CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738          236 -WILHD----WNDEHCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       236 -~vLh~----~~~~~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                       .|+.+    ...+...++++++.+.|+|||++++..
T Consensus       121 D~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  157 (194)
T d1dusa_         121 NKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI  157 (194)
T ss_dssp             EEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence             33332    334445689999999999999988753

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.90  E-value=6.6e-10  Score=91.68  Aligned_cols=76  Identities=18%  Similarity=0.294  Sum_probs=57.3

Q ss_pred             CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe--------------------EEEccCChh
Q 035738          192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM--------------------WILHDWNDE  244 (333)
Q Consensus       192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv--------------------~vLh~~~~~  244 (333)
                      -.|||||||+|.++..+++.+|+..++++|+ +.++..+.+.      .++                    .++..++++
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P  110 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDP  110 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCC
T ss_pred             ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccccc
Confidence            3699999999999999999999999999998 7777655431      222                    333232222


Q ss_pred             ----H-------HHHHHHHHHHhCCCCcEEEEEe
Q 035738          245 ----H-------CLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       245 ----~-------~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                          .       ...+|+.+.++|||||.|+|..
T Consensus       111 ~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         111 WPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             CCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             cchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence                1       1379999999999999998864

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.89  E-value=7.6e-10  Score=94.61  Aligned_cols=102  Identities=12%  Similarity=0.122  Sum_probs=78.8

Q ss_pred             HHHHHhhhhhh----hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC-------
Q 035738          166 FNTVMYNYTSL----VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH-------  232 (333)
Q Consensus       166 f~~~m~~~~~~----~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------  232 (333)
                      |...|...+..    .+..++..++ ..++.+|||+|||+|.++..|++. .|+.+++.+|+ +++++.|+++       
T Consensus        69 ~~~~~~r~tqiiypkD~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~  147 (264)
T d1i9ga_          69 YVMSMPRGPQVIYPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ  147 (264)
T ss_dssp             HHTTSCSCSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS
T ss_pred             HHhhccCCccccchHHHHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccC
Confidence            33445544443    2445666666 889999999999999999999987 79999999999 8888887642       


Q ss_pred             --CCe------------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          233 --PCM------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       233 --~gv------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                        .++                  .|+-+.+++.  +++.+++++|||||++++..++.
T Consensus       148 ~~~nv~~~~~d~~~~~~~~~~fDaV~ldlp~P~--~~l~~~~~~LkpGG~lv~~~P~i  203 (264)
T d1i9ga_         148 PPDNWRLVVSDLADSELPDGSVDRAVLDMLAPW--EVLDAVSRLLVAGGVLMVYVATV  203 (264)
T ss_dssp             CCTTEEEECSCGGGCCCCTTCEEEEEEESSCGG--GGHHHHHHHEEEEEEEEEEESSH
T ss_pred             CCceEEEEecccccccccCCCcceEEEecCCHH--HHHHHHHhccCCCCEEEEEeCcc
Confidence              111                  5555677776  89999999999999999887743

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.87  E-value=2.5e-10  Score=97.18  Aligned_cols=74  Identities=15%  Similarity=0.190  Sum_probs=58.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---C--Ce-----------------------EEEcc
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---P--CM-----------------------WILHD  240 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--gv-----------------------~vLh~  240 (333)
                      .+.+|||||||+|.++..++++..  +++++|+ +.+++.|++.   .  ++                       .++++
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~  114 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY  114 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeec
Confidence            457899999999999999999865  7899999 8898887642   1  11                       22334


Q ss_pred             C-ChhHHHHHHHHHHHhCCCCcEEEE
Q 035738          241 W-NDEHCLKLLKNCYKSIPEDGKVIA  265 (333)
Q Consensus       241 ~-~~~~~~~lL~~~~~~L~pgG~l~i  265 (333)
                      + +.++..++|+++++.|+|||.+++
T Consensus       115 ~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         115 IIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             CCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            4 566777899999999999999886

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.86  E-value=1e-09  Score=89.37  Aligned_cols=86  Identities=15%  Similarity=0.166  Sum_probs=65.5

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe----------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM----------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv----------------  235 (333)
                      .++..+. ..+..+|||||||+|.++..+++.+  .+++++|+ |.+++.++++       .++                
T Consensus        24 ~il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~  100 (186)
T d1l3ia_          24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD  100 (186)
T ss_dssp             HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred             HHHHhcC-CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCC
Confidence            3445555 7788999999999999999998765  47999999 8999988763       122                


Q ss_pred             --EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          236 --WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 --~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                        .++..........+++.+.+.|+|||++++...
T Consensus       101 ~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~  135 (186)
T d1l3ia_         101 IDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI  135 (186)
T ss_dssp             EEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cCEEEEeCccccchHHHHHHHHHhCcCCEEEEEee
Confidence              343333333446899999999999999987654

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=9.8e-09  Score=90.91  Aligned_cols=94  Identities=12%  Similarity=0.238  Sum_probs=71.4

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---------------CCe-------
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---------------PCM-------  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~gv-------  235 (333)
                      ..+++.+. +.+..+|||||||+|..+..+++.++..+++|+|+ +.+++.|++.               ..+       
T Consensus       141 ~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~  219 (328)
T d1nw3a_         141 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF  219 (328)
T ss_dssp             HHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred             HHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence            45666666 78889999999999999999999999989999999 7787766421               111       


Q ss_pred             --------------EEEccC-ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 035738          236 --------------WILHDW-NDEHCLKLLKNCYKSIPEDGKVIAVELMLPEV  273 (333)
Q Consensus       236 --------------~vLh~~-~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~  273 (333)
                                    -+.+.+ -.++..+.|+++++.|||||++++.+.+.+..
T Consensus       220 ~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~~~~~  272 (328)
T d1nw3a_         220 LSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLN  272 (328)
T ss_dssp             TSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             cccccccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEecccCCCC
Confidence                          111211 12344688999999999999999998776643

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=7.3e-09  Score=91.15  Aligned_cols=102  Identities=14%  Similarity=0.163  Sum_probs=77.2

Q ss_pred             HHHHHhhhhhh----hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC-------
Q 035738          166 FNTVMYNYTSL----VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH-------  232 (333)
Q Consensus       166 f~~~m~~~~~~----~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------  232 (333)
                      |...|...+..    .+..++..++ ..++.+|||+|||+|.++..|++. .|+.+++.+|+ +.+++.|+++       
T Consensus        71 ~~~~~~r~tqiiypkD~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~  149 (324)
T d2b25a1          71 YVVLMKRGTAITFPKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS  149 (324)
T ss_dssp             HHHHSCCSSCCCCHHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             HhhccCCCCcccccccHHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhh
Confidence            44556554443    2445666676 889999999999999999999986 68999999999 8888776531       


Q ss_pred             ----------CCe--------------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          233 ----------PCM--------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       233 ----------~gv--------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                                .++                    .|+-+.+++.  .+|.+++++|||||++++.-++.
T Consensus       150 ~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~LD~p~P~--~~l~~~~~~LKpGG~lv~~~P~i  215 (324)
T d2b25a1         150 WKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPH--VTLPVFYPHLKHGGVCAVYVVNI  215 (324)
T ss_dssp             HTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSSSTT--TTHHHHGGGEEEEEEEEEEESSH
T ss_pred             hhhhhhhccccceeEEecchhhcccccCCCCcceEeecCcCHH--HHHHHHHHhccCCCEEEEEeCCH
Confidence                      011                    4444666655  68999999999999999987644

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=1.9e-07  Score=79.95  Aligned_cols=45  Identities=20%  Similarity=0.333  Sum_probs=40.4

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      .....+|||+|||+|..+..++..+|+++++++|+ +.+++.|+++
T Consensus       106 ~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~N  151 (274)
T d2b3ta1         106 PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRN  151 (274)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHH
T ss_pred             cccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHH
Confidence            34567899999999999999999999999999999 8899888764

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.51  E-value=2.5e-08  Score=82.69  Aligned_cols=84  Identities=14%  Similarity=0.227  Sum_probs=59.7

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC------CCe----------------
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH------PCM----------------  235 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~gv----------------  235 (333)
                      .+++.+. ..++.+|||||||+|..+..+++.. ++.+++.+|+ +.+++.++++      .++                
T Consensus        66 ~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~  144 (213)
T d1dl5a1          66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP  144 (213)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccc
Confidence            4556666 8889999999999999999998865 6789999998 8888887653      111                


Q ss_pred             --EEEccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738          236 --WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       236 --~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                        .|+....-+   .+.+++.+.|+|||++++..
T Consensus       145 fD~I~~~~~~~---~~p~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         145 YDVIFVTVGVD---EVPETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             EEEEEECSBBS---CCCHHHHHHEEEEEEEEEEB
T ss_pred             hhhhhhhccHH---HhHHHHHHhcCCCcEEEEEE
Confidence              222211111   12335567899999998843

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.50  E-value=5.8e-08  Score=78.85  Aligned_cols=94  Identities=20%  Similarity=0.280  Sum_probs=73.1

Q ss_pred             hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CCe---------------
Q 035738          177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PCM---------------  235 (333)
Q Consensus       177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~gv---------------  235 (333)
                      +..++++.+. ..+...+||++||+|.++..+++++|+.+++++|. +.+++.+++.     ..+               
T Consensus        11 ll~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~   89 (192)
T d1m6ya2          11 MVREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK   89 (192)
T ss_dssp             THHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred             HHHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHH
Confidence            3456777776 77788999999999999999999999999999999 8999877642     111               


Q ss_pred             --------EEEccCC--h----------hHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738          236 --------WILHDWN--D----------EHCLKLLKNCYKSIPEDGKVIAVELMLP  271 (333)
Q Consensus       236 --------~vLh~~~--~----------~~~~~lL~~~~~~L~pgG~l~i~e~~~~  271 (333)
                              .||-++.  .          ....+.|..+.+.|+|||+++++.+-..
T Consensus        90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~  145 (192)
T d1m6ya2          90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSL  145 (192)
T ss_dssp             HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHH
T ss_pred             HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccH
Confidence                    5555532  1          1234789999999999999999887543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.3e-07  Score=78.85  Aligned_cols=85  Identities=15%  Similarity=0.104  Sum_probs=58.4

Q ss_pred             HHHhhcc-CCCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC-----------CCe----------
Q 035738          180 NILESYK-GFDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH-----------PCM----------  235 (333)
Q Consensus       180 ~~~~~~~-~~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-----------~gv----------  235 (333)
                      .++..+. ..+++.+|||||||+|..+..+++. .|..+++++|+ +.+++.++++           .++          
T Consensus        65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~  144 (224)
T d1i1na_          65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG  144 (224)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence            3444442 2678899999999999999988875 67889999999 8888877542           011          


Q ss_pred             --------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738          236 --------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       236 --------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                              .|+....-+   .+...+.+.|+|||++++.-
T Consensus       145 ~~~~~~fD~I~~~~~~~---~ip~~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         145 YAEEAPYDAIHVGAAAP---VVPQALIDQLKPGGRLILPV  181 (224)
T ss_dssp             CGGGCCEEEEEECSBBS---SCCHHHHHTEEEEEEEEEEE
T ss_pred             cchhhhhhhhhhhcchh---hcCHHHHhhcCCCcEEEEEE
Confidence                    222211111   23445778999999999843

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.25  E-value=2.2e-07  Score=75.50  Aligned_cols=78  Identities=12%  Similarity=0.098  Sum_probs=59.6

Q ss_pred             CCCCeEEEEcCCccHHH----HHHHHH----CCCCeEEEeec-hhHhhhCCCC----------C----------------
Q 035738          189 DNIKQLVDVGGGIGVTL----QAITTK----YPYIKGINFDL-PHVIEHVPPH----------P----------------  233 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~----~~l~~~----~p~~~~~~~D~-~~~~~~a~~~----------~----------------  233 (333)
                      .+..||+++|||+|.-.    +.+.+.    ..++++++.|+ +.+++.|++-          +                
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            45679999999999843    334433    23457899999 7888877531          0                


Q ss_pred             C-------------------------------e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 035738          234 C-------------------------------M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAV  266 (333)
Q Consensus       234 g-------------------------------v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~  266 (333)
                      +                               +    +||++++++...++|++++++|+|||.|++-
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            0                               0    8899999999999999999999999988765

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=7.6e-07  Score=78.45  Aligned_cols=74  Identities=19%  Similarity=0.135  Sum_probs=50.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-------CCe------------------EE-----Ec
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH-------PCM------------------WI-----LH  239 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~gv------------------~v-----Lh  239 (333)
                      ++.+|||||||+|.++..++++.. .+++++|.+.+++.+++.       ..+                  .|     .+
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~  116 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY  116 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence            467999999999999987777544 489999996565554421       111                  12     22


Q ss_pred             cC-ChhHHHHHHHHHHHhCCCCcEEE
Q 035738          240 DW-NDEHCLKLLKNCYKSIPEDGKVI  264 (333)
Q Consensus       240 ~~-~~~~~~~lL~~~~~~L~pgG~l~  264 (333)
                      .. .+.....++....+.|+|||+++
T Consensus       117 ~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         117 FLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeccchhHHHHHHHHHhccCCCeEEE
Confidence            22 23344578999999999999875

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.05  E-value=1.1e-06  Score=72.71  Aligned_cols=81  Identities=16%  Similarity=0.228  Sum_probs=56.2

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CCe------------------E
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PCM------------------W  236 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~gv------------------~  236 (333)
                      .++..++ +.+..+|||||||+|.++..+++..  .+++.+|. +..++.++++    .++                  .
T Consensus        61 ~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~  137 (224)
T d1vbfa_          61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR  137 (224)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred             HHHHHhh-hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHH
Confidence            4566666 8889999999999999998888775  46888998 7777776542    222                  2


Q ss_pred             EEccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 035738          237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAV  266 (333)
Q Consensus       237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~  266 (333)
                      |+-.-.-   ..+...+.+.|+|||++++.
T Consensus       138 Iiv~~a~---~~ip~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         138 VVVWATA---PTLLCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             EEESSBB---SSCCHHHHHTEEEEEEEEEE
T ss_pred             HHhhcch---hhhhHHHHHhcCCCCEEEEE
Confidence            2211111   12344566889999999884

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.03  E-value=9.5e-07  Score=77.39  Aligned_cols=75  Identities=17%  Similarity=0.195  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCC------CCC-e-----------------------EEEc
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPP------HPC-M-----------------------WILH  239 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~g-v-----------------------~vLh  239 (333)
                      ++.+|||||||+|.++..++++.+ .+++++|.+.....+++      ..+ +                       .+.|
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~  111 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY  111 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence            467899999999999998888654 37999998443333321      111 1                       2223


Q ss_pred             cC-ChhHHHHHHHHHHHhCCCCcEEEE
Q 035738          240 DW-NDEHCLKLLKNCYKSIPEDGKVIA  265 (333)
Q Consensus       240 ~~-~~~~~~~lL~~~~~~L~pgG~l~i  265 (333)
                      .. .+.....++..+.+.|+|||+++-
T Consensus       112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         112 CLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            22 233456899999999999998863

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.00  E-value=4.2e-06  Score=70.94  Aligned_cols=105  Identities=13%  Similarity=0.109  Sum_probs=75.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC-e-----------------EEEccCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC-M-----------------WILHDWN  242 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g-v-----------------~vLh~~~  242 (333)
                      ..++.+|||+|||+|.++..++++ +..+++++|+ |..++.++++      .+ +                 .|+.+.+
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p  183 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV  183 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred             cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence            457889999999999999999886 4568999999 8888877643      11 1                 4554443


Q ss_pred             hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCee
Q 035738          243 DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGI  317 (333)
Q Consensus       243 ~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~  317 (333)
                      . .+...|..+.+.|+|||.+.+.+....+.                       ......+.+.++.+..||.+.
T Consensus       184 ~-~~~~~l~~a~~~l~~gG~lh~~~~~~~~~-----------------------~~~~~~e~~~~~~~~~g~~v~  234 (260)
T d2frna1         184 V-RTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVE  234 (260)
T ss_dssp             S-SGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEE
T ss_pred             C-chHHHHHHHHhhcCCCCEEEEEecccccc-----------------------chhhHHHHHHHHHHHcCCceE
Confidence            2 33478899999999999998877653321                       011235667888889999764

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=4e-06  Score=69.13  Aligned_cols=83  Identities=16%  Similarity=0.248  Sum_probs=66.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC---CCe---------------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH---PCM---------------------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---~gv---------------------------  235 (333)
                      ..++.+|||||||+|..+..+++..| +.+++.+|. |...+.|+++   .|+                           
T Consensus        57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f  136 (219)
T d2avda1          57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  136 (219)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence            45789999999999999999999876 789999998 7887777653   111                           


Q ss_pred             -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                       .|+.+-+.......+..+.+.|+|||.+++-+...
T Consensus       137 D~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~l~  172 (219)
T d2avda1         137 DVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLW  172 (219)
T ss_dssp             EEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred             cEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence             56666666667788999999999999987755543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=5.5e-06  Score=72.16  Aligned_cols=77  Identities=18%  Similarity=0.131  Sum_probs=51.4

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC---CC---CCe-----------------------EE
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP---PH---PCM-----------------------WI  237 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~~---~gv-----------------------~v  237 (333)
                      ..++.+|||||||+|.++..++++.+ .+++++|. +.+....+   ++   ..+                       .+
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~  111 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM  111 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence            44678999999999999998888765 48999999 54432111   11   111                       22


Q ss_pred             EccCChh-HHHHHHHHHHHhCCCCcEEEE
Q 035738          238 LHDWNDE-HCLKLLKNCYKSIPEDGKVIA  265 (333)
Q Consensus       238 Lh~~~~~-~~~~lL~~~~~~L~pgG~l~i  265 (333)
                      .|....+ ....++....+.|+|||+++-
T Consensus       112 ~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         112 GYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             BTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             eeecccccccHHHHHHHHhcCCCCcEEec
Confidence            2333333 345778778899999998873

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.83  E-value=1.7e-05  Score=61.42  Aligned_cols=76  Identities=11%  Similarity=0.057  Sum_probs=53.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC----e-------------------EEEccCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC----M-------------------WILHDWN  242 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g----v-------------------~vLh~~~  242 (333)
                      .+.+|||+|||+|.++.+.+.+... +++.+|. +.+++.++++   .+    +                   -|+-+.|
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP   92 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP   92 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence            5789999999999999998887664 8999999 7888766543   11    1                   3444543


Q ss_pred             --hhHHHHHHHHHHH--hCCCCcEEEEE
Q 035738          243 --DEHCLKLLKNCYK--SIPEDGKVIAV  266 (333)
Q Consensus       243 --~~~~~~lL~~~~~--~L~pgG~l~i~  266 (333)
                        ......+|..+..  .|+|+|.+++-
T Consensus        93 y~~~~~~~~l~~i~~~~~L~~~g~iiiE  120 (152)
T d2esra1          93 YAKETIVATIEALAAKNLLSEQVMVVCE  120 (152)
T ss_dssp             SHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             hccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence              2334566666654  58898887653

>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.80  E-value=7.8e-06  Score=55.23  Aligned_cols=57  Identities=18%  Similarity=0.174  Sum_probs=48.6

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS  102 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~  102 (333)
                      +.|++.++..+  .|.|+.|||+++|+    ++.-+.|+|..|...|++.++     .++.|.+++..
T Consensus         8 l~IL~~~a~~~--~~~s~~eia~~~~~----~~st~~rll~tL~~~g~l~~~-----~~g~y~lG~~l   64 (75)
T d1mkma1           8 FEILDFIVKNP--GDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK-----KDKRYVPGYKL   64 (75)
T ss_dssp             HHHHHHHHHCS--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC-----TTSCEEECTHH
T ss_pred             HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC-----CCCCEeecHHH
Confidence            45778888764  58999999999999    999999999999999999997     35778887543

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.73  E-value=7.7e-06  Score=71.08  Aligned_cols=81  Identities=20%  Similarity=0.276  Sum_probs=62.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----------CCe-------------------E
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----------PCM-------------------W  236 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~gv-------------------~  236 (333)
                      -+++.+||.||+|.|..+..+++..|..+++++|+ |.+++.++++           +.+                   .
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence            34678999999999999999999888889999999 8999877653           222                   5


Q ss_pred             EEccCChh-----H-----HHHHHHHHHHhCCCCcEEEEEee
Q 035738          237 ILHDWNDE-----H-----CLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       237 vLh~~~~~-----~-----~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      |+.+.+|+     .     ..+.++.+++.|+|||.+++.-.
T Consensus       155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~  196 (312)
T d1uira_         155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (312)
T ss_dssp             EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence            55554321     1     24789999999999998887643

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.72  E-value=2.4e-05  Score=68.40  Aligned_cols=80  Identities=13%  Similarity=0.064  Sum_probs=59.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CCe--------------------------EE
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PCM--------------------------WI  237 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~gv--------------------------~v  237 (333)
                      ..+..+|||++||+|.++..++.... .+++.+|+ +.+++.++++   -|+                          .|
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V  221 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV  221 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence            45678999999999999999887754 48999999 8888887653   111                          45


Q ss_pred             EccCCh------------hHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          238 LHDWND------------EHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       238 Lh~~~~------------~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      +.+.|.            ..-.++++.+.+.|+|||+|+.+..
T Consensus       222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~  264 (324)
T d2as0a2         222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  264 (324)
T ss_dssp             EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            554431            1124588888999999999888864

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.72  E-value=1.4e-05  Score=65.91  Aligned_cols=52  Identities=13%  Similarity=0.186  Sum_probs=39.1

Q ss_pred             HHHhhcc-CCCCCCeEEEEcCCccHHHHHHHHH------CCCCeEEEeec-hhHhhhCCC
Q 035738          180 NILESYK-GFDNIKQLVDVGGGIGVTLQAITTK------YPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       180 ~~~~~~~-~~~~~~~vlDVGgG~G~~~~~l~~~------~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      .++..+. +..+..+|||||||+|..+..+++.      ++..+++.+|. +..++.+++
T Consensus        69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~  128 (223)
T d1r18a_          69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKA  128 (223)
T ss_dssp             HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHH
Confidence            3445441 2678899999999999999887764      35668999998 777776654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.71  E-value=6.9e-06  Score=67.44  Aligned_cols=50  Identities=18%  Similarity=0.254  Sum_probs=39.6

Q ss_pred             HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      .++..++ ..+..+|||||||+|..+..+++-.. .+++++|. +.+++.+++
T Consensus        69 ~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~  119 (215)
T d1jg1a_          69 IMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKR  119 (215)
T ss_dssp             HHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHH
T ss_pred             HHHHhhc-cCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHH
Confidence            4555566 88889999999999999998887543 56888888 778877764

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.66  E-value=3.7e-05  Score=63.44  Aligned_cols=82  Identities=20%  Similarity=0.194  Sum_probs=65.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC---CCe---------------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH---PCM---------------------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---~gv---------------------------  235 (333)
                      ..++.+||+||+++|..+..+++..| +.+++.+|. |...+.|+++   .|+                           
T Consensus        57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~  136 (227)
T d1susa1          57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  136 (227)
T ss_dssp             HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred             hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence            34689999999999999999999987 689999998 7777777653   111                           


Q ss_pred             --EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          236 --WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       236 --~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                        .|+-+-........++.+.+.|+|||.+++-+..
T Consensus       137 fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DNvl  172 (227)
T d1susa1         137 YDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTL  172 (227)
T ss_dssp             BSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred             eeEEEeccchhhhHHHHHHHHhhcCCCcEEEEccCC
Confidence              6666666666778999999999999987776554

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.64  E-value=9.6e-06  Score=66.60  Aligned_cols=81  Identities=7%  Similarity=0.054  Sum_probs=56.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC---CC----e-----------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH---PC----M-----------------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---~g----v-----------------------  235 (333)
                      ..++.+|||||||+|..+..++++.+ +.+++.+|. +...+.++++   .|    +                       
T Consensus        54 ~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~  133 (214)
T d2cl5a1          54 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL  133 (214)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred             hhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccc
Confidence            34678999999999999999999875 689999999 7888877643   11    1                       


Q ss_pred             -EEEccCChhH--HHHHHHHHHHhCCCCcEEEEEeee
Q 035738          236 -WILHDWNDEH--CLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       236 -~vLh~~~~~~--~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                       .++-+...+.  ....+.++.+.|+|||.| |+|.+
T Consensus       134 D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvI-v~Ddv  169 (214)
T d2cl5a1         134 DMVFLDHWKDRYLPDTLLLEKCGLLRKGTVL-LADNV  169 (214)
T ss_dssp             EEEEECSCGGGHHHHHHHHHHTTCEEEEEEE-EESCC
T ss_pred             ceeeecccccccccHHHHHHHhCccCCCcEE-EEeCc
Confidence             3443333222  223466777889999865 44543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.52  E-value=3.4e-05  Score=67.18  Aligned_cols=77  Identities=10%  Similarity=0.059  Sum_probs=56.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe----------------------EEEcc
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM----------------------WILHD  240 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv----------------------~vLh~  240 (333)
                      .+.+|||++||+|.++..++..  ..+++.+|+ +.+++.++++      .++                      .|+.+
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D  222 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  222 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence            5789999999999999988764  347899999 8888888753      111                      45544


Q ss_pred             CCh------------hHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          241 WND------------EHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       241 ~~~------------~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      .|.            ..-.++++.+.+.|+|||.|+++..
T Consensus       223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            431            1123688899999999999887655

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.51  E-value=3.3e-05  Score=66.63  Aligned_cols=80  Identities=20%  Similarity=0.238  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EE
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WI  237 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~v  237 (333)
                      -+.+.+||-||+|.|..+..+++..|-.+++++|+ |.|++.++++          |.+                   .|
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI  183 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI  183 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence            34678999999999999999998777778999999 8899888753          222                   56


Q ss_pred             EccCChhH-------HHHHHHHHHHhCCCCcEEEEEe
Q 035738          238 LHDWNDEH-------CLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       238 Lh~~~~~~-------~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      +.+.+++.       ..+.++.+++.|+|||.++..-
T Consensus       184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         184 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             EECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            66665442       2457899999999999988764

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.51  E-value=2.3e-05  Score=66.73  Aligned_cols=80  Identities=25%  Similarity=0.296  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EE
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WI  237 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~v  237 (333)
                      ..++.+||-||+|.|..+..+++..+..+++++|+ |.+++.++++          |.+                   -|
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI  152 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence            34678999999999999999998888889999999 8999888653          222                   55


Q ss_pred             EccCChhH-------HHHHHHHHHHhCCCCcEEEEEe
Q 035738          238 LHDWNDEH-------CLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       238 Lh~~~~~~-------~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      +.+.+++.       -.+.++.+++.|+|||.++..-
T Consensus       153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            55554431       2468899999999999877653

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.50  E-value=3.6e-05  Score=65.97  Aligned_cols=79  Identities=29%  Similarity=0.389  Sum_probs=61.1

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EEE
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WIL  238 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~vL  238 (333)
                      +++.+||-||+|.|..+..+++..|..+++++|+ |.|++.++++          +.+                   .|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            4678999999999999999998888888999999 8999988763          222                   555


Q ss_pred             ccCChhH--------HHHHHHHHHHhCCCCcEEEEEe
Q 035738          239 HDWNDEH--------CLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       239 h~~~~~~--------~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      .+.+++.        -.+.++.+++.|+|||.+++.-
T Consensus       168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence            5554432        1478999999999999987764

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=3.1e-05  Score=66.21  Aligned_cols=81  Identities=17%  Similarity=0.218  Sum_probs=61.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EE
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WI  237 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~v  237 (333)
                      -+.+.+||-||+|.|..+..+++..+..+++++|+ |.|++.++++          +.+                   -|
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence            44678999999999999999998778889999999 8999988753          222                   45


Q ss_pred             EccCChhHH-------HHHHHHHHHhCCCCcEEEEEee
Q 035738          238 LHDWNDEHC-------LKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       238 Lh~~~~~~~-------~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      +.+.+++..       .+.++.+++.|+|||.+++.-.
T Consensus       156 i~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~  193 (285)
T d2o07a1         156 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE  193 (285)
T ss_dssp             EEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence            555543321       2568999999999999877643

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.44  E-value=4.1e-05  Score=65.59  Aligned_cols=81  Identities=16%  Similarity=0.215  Sum_probs=63.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe--------------------E
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM--------------------W  236 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv--------------------~  236 (333)
                      -+++.+||-||+|.|..+..+++..|-.+++++|+ |.|++.++++          +.+                    .
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv  157 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  157 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence            34678999999999999999999777778999999 8899988763          221                    5


Q ss_pred             EEccCChhH-------HHHHHHHHHHhCCCCcEEEEEee
Q 035738          237 ILHDWNDEH-------CLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       237 vLh~~~~~~-------~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      |+.+.+++.       ..+.++.+++.|+|||.+++.-.
T Consensus       158 Ii~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~  196 (290)
T d1xj5a_         158 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE  196 (290)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence            666655432       24689999999999999887653

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.41  E-value=4.6e-05  Score=64.89  Aligned_cols=79  Identities=18%  Similarity=0.220  Sum_probs=59.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------------CCe---------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------------PCM---------------  235 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------~gv---------------  235 (333)
                      ..++.+||.||||.|..+..+++ +|..+++++|+ |.+++.++++                +.+               
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~  148 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR  148 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred             CCCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence            45778999999999999999986 56678999999 8999887642                222               


Q ss_pred             ---EEEccCChhH-------HHHHHHHHHHhCCCCcEEEEEe
Q 035738          236 ---WILHDWNDEH-------CLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       236 ---~vLh~~~~~~-------~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                         .|+.+.+++.       -.+.++.+++.|+|||.+++.-
T Consensus       149 ~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         149 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence               4555544321       1367999999999999887654

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.40  E-value=0.00018  Score=57.05  Aligned_cols=88  Identities=16%  Similarity=0.209  Sum_probs=64.7

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--CCe-------------------
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--PCM-------------------  235 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~gv-------------------  235 (333)
                      ..++++.+. ..++..++|..+|.|.++..++++  +.+++++|. |.+++.++..  .++                   
T Consensus         7 l~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~   83 (182)
T d1wg8a2           7 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGV   83 (182)
T ss_dssp             HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCC
Confidence            456777666 778889999999999999999997  468999999 8888776542  221                   


Q ss_pred             ----EEEccCC--h----------hHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          236 ----WILHDWN--D----------EHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 ----~vLh~~~--~----------~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                          .||-++.  .          ......|....+.|+|||+++++..
T Consensus        84 ~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f  132 (182)
T d1wg8a2          84 ERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF  132 (182)
T ss_dssp             SCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence                4444441  0          0123468888888899998888876

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=97.37  E-value=5.7e-05  Score=59.50  Aligned_cols=43  Identities=9%  Similarity=0.165  Sum_probs=35.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ...+.+|||+|||+|.++.+++.+.  .+++.+|. +.+++.++++
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N   82 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKEN   82 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHH
T ss_pred             ccCCCeEEEeccccchhhhhhhhcc--chhhhcccCHHHHhhhhHH
Confidence            4567899999999999999888765  47888999 8888877653

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.32  E-value=4e-05  Score=61.76  Aligned_cols=42  Identities=21%  Similarity=0.281  Sum_probs=34.8

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      .+.+|||+|||+|.++..++...+ .+++++|+ +.+++.++++
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N   90 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRN   90 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHc
Confidence            367999999999999887777654 37999999 8888888765

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=97.24  E-value=8e-05  Score=63.00  Aligned_cols=42  Identities=21%  Similarity=0.340  Sum_probs=36.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      +..+++|+|||+|..+..++ .+|+.+++++|+ |.+++.|+++
T Consensus       110 ~~~~vld~g~GsG~i~~~la-~~~~~~v~a~Dis~~Al~~A~~N  152 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIARKN  152 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHH-HHSSCEEEEEESCHHHHHHHHHH
T ss_pred             cccEEEEeeeeeehhhhhhh-hcccceeeechhhhhHHHHHHHH
Confidence            45689999999999999987 579999999999 8888887753

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=6.9e-05  Score=62.82  Aligned_cols=44  Identities=7%  Similarity=0.117  Sum_probs=40.1

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ....++||||||+|..+..++.++|+++++++|+ +.+++.|+++
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N  104 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKN  104 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHH
T ss_pred             cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHH
Confidence            3557999999999999999999999999999999 8999988764

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.13  E-value=9.6e-05  Score=59.78  Aligned_cols=42  Identities=17%  Similarity=0.177  Sum_probs=34.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      .+.+|||+|||+|.++..++.+.+ .+++++|+ +.+++.++++
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N   88 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIEN   88 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHH
Confidence            457999999999999998776544 58999999 7888887754

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.01  E-value=0.00079  Score=57.66  Aligned_cols=43  Identities=14%  Similarity=0.087  Sum_probs=36.1

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ...+.+|||+.||+|.++..++...  .+++.+|. +.+++.|+++
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~G--A~V~~VD~s~~al~~a~~N  173 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKEN  173 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHH
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhCC--CeEEEEeChHHHHHHHHHh
Confidence            4567899999999999999888754  58999999 7888888754

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=96.99  E-value=0.0017  Score=53.44  Aligned_cols=51  Identities=8%  Similarity=0.255  Sum_probs=40.3

Q ss_pred             hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC
Q 035738          177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP  230 (333)
Q Consensus       177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~  230 (333)
                      ....+++..+ .....+|||||||+|.++..|++...  +++++|+ +..++..+
T Consensus         9 i~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~~--~v~avE~D~~l~~~l~   60 (235)
T d1qama_           9 NIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTE   60 (235)
T ss_dssp             HHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHH
T ss_pred             HHHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCcC--ceEEEeeccchHHHHH
Confidence            3456777666 77899999999999999999998753  6888888 66665543

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.94  E-value=0.0009  Score=54.26  Aligned_cols=52  Identities=10%  Similarity=0.111  Sum_probs=39.0

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCC
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~  231 (333)
                      ..+++.+. .....+|+|.|||+|.++..+.++.+. .+++++|+ +..+..++.
T Consensus         9 ~~m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~   62 (223)
T d2ih2a1           9 DFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPW   62 (223)
T ss_dssp             HHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTT
T ss_pred             HHHHHhcC-CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhccc
Confidence            34445444 567789999999999999999887665 56899999 666655543

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=96.94  E-value=0.0023  Score=52.52  Aligned_cols=87  Identities=13%  Similarity=0.002  Sum_probs=57.4

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhh---hC-CCC----------------C-C-e-
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIE---HV-PPH----------------P-C-M-  235 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~---~a-~~~----------------~-g-v-  235 (333)
                      .++.+.+. +.+..+|||+|||.|.++..++...+...+.++++-.-..   .. ..+                + + + 
T Consensus        56 ~~~~~~~~-~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~D  134 (257)
T d2p41a1          56 RWFVERNL-VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCD  134 (257)
T ss_dssp             HHHHHTTS-SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCS
T ss_pred             HHHHHhcC-ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcCC
Confidence            44555554 6777899999999999999999887666665555511010   00 000                0 0 1 


Q ss_pred             EEEccCCh---------hHHHHHHHHHHHhCCCCcEEEEE
Q 035738          236 WILHDWND---------EHCLKLLKNCYKSIPEDGKVIAV  266 (333)
Q Consensus       236 ~vLh~~~~---------~~~~~lL~~~~~~L~pgG~l~i~  266 (333)
                      .+++|..+         +...++|.-+.+.|+|||.+++-
T Consensus       135 ~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK  174 (257)
T d2p41a1         135 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  174 (257)
T ss_dssp             EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             EEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence            77787642         23457888899999999987664

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00044  Score=54.84  Aligned_cols=75  Identities=9%  Similarity=0.026  Sum_probs=52.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-------------------EEEccCC-
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-------------------WILHDWN-  242 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-------------------~vLh~~~-  242 (333)
                      ...+|||++||+|.++.+.+.+... +++.+|. +.+++.++++      .+.                   .|+-+-| 
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY  121 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF  121 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             chhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence            3468999999999999999988765 8899999 7888766643      111                   4444433 


Q ss_pred             -hhHHHHHHHHHHH--hCCCCcEEEE
Q 035738          243 -DEHCLKLLKNCYK--SIPEDGKVIA  265 (333)
Q Consensus       243 -~~~~~~lL~~~~~--~L~pgG~l~i  265 (333)
                       .....+++..+.+  .|+|+|.+++
T Consensus       122 ~~~~~~~~l~~l~~~~~L~~~~iIii  147 (183)
T d2fpoa1         122 RRGLLEETINLLEDNGWLADEALIYV  147 (183)
T ss_dssp             STTTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             ccchHHHHHHHHHHCCCCCCCeEEEE
Confidence             3334566666655  4788776655

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=96.83  E-value=0.00064  Score=58.74  Aligned_cols=80  Identities=16%  Similarity=0.090  Sum_probs=55.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--------CCe----------------------E
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--------PCM----------------------W  236 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~gv----------------------~  236 (333)
                      ...+.+|||+.||+|.++..++.. ...+++.+|+ +..++.++++        .++                      .
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~  220 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI  220 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence            446789999999999999876653 3346899999 7788776643        111                      4


Q ss_pred             EEccCCh------------hHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          237 ILHDWND------------EHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       237 vLh~~~~------------~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      |+.|-|.            ..-.++++.+.+.|+|||.|+++..
T Consensus       221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            4444331            1123688888888888888777554

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.0023  Score=50.37  Aligned_cols=46  Identities=28%  Similarity=0.179  Sum_probs=36.4

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeech
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDLP  223 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~~  223 (333)
                      ..++.+.+.-+.+..+|||+||+.|.++..+.+. .+..+++++|+.
T Consensus        10 L~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~   56 (180)
T d1ej0a_          10 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLL   56 (180)
T ss_dssp             HHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESS
T ss_pred             HHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecc
Confidence            3456666665678889999999999999998875 455788999983

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.65  E-value=0.00099  Score=52.64  Aligned_cols=79  Identities=13%  Similarity=0.116  Sum_probs=54.5

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C-Ce----------------------EEE
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P-CM----------------------WIL  238 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-gv----------------------~vL  238 (333)
                      -.+.+|||+.||+|.++.+.+.+... +++.+|. +.+++.++++      . .+                      -|+
T Consensus        40 ~~~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf  118 (182)
T d2fhpa1          40 FDGGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL  118 (182)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence            35789999999999999999997754 7889998 7777776643      0 11                      344


Q ss_pred             ccCC--hhHHHHHHHHHHH--hCCCCcEEEEEeee
Q 035738          239 HDWN--DEHCLKLLKNCYK--SIPEDGKVIAVELM  269 (333)
Q Consensus       239 h~~~--~~~~~~lL~~~~~--~L~pgG~l~i~e~~  269 (333)
                      -|-|  ......+|..+.+  .|+|+|.++ +|..
T Consensus       119 lDPPY~~~~~~~~l~~i~~~~~L~~~giIi-~E~~  152 (182)
T d2fhpa1         119 LDPPYAKQEIVSQLEKMLERQLLTNEAVIV-CETD  152 (182)
T ss_dssp             ECCCGGGCCHHHHHHHHHHTTCEEEEEEEE-EEEE
T ss_pred             echhhhhhHHHHHHHHHHHCCCCCCCEEEE-EEcC
Confidence            4433  2334567777755  588888654 5653

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=96.63  E-value=0.0013  Score=54.55  Aligned_cols=52  Identities=12%  Similarity=0.297  Sum_probs=42.1

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ...+++.++ .....+|||||||+|.++..|++..  .+++++|+ +.+++.+++.
T Consensus        18 i~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~   70 (245)
T d1yuba_          18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEK   70 (245)
T ss_dssp             HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCT
T ss_pred             HHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhh
Confidence            456777666 7788999999999999999999985  47888998 6777777653

>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Hypothetical protein PH1061
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.49  E-value=0.00063  Score=48.10  Aligned_cols=70  Identities=20%  Similarity=0.208  Sum_probs=53.7

Q ss_pred             HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCcccccccccccc
Q 035738           27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSK  103 (333)
Q Consensus        27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~  103 (333)
                      .++..-.++.|+..|...   |+.|+.|||+.+++    .+..+.+.|+.|...|++++.... +...-.|++|+.+.
T Consensus        11 ~~l~~p~r~~IL~~L~~~---~~~~~~eLa~~l~i----s~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~   81 (100)
T d1ub9a_          11 HILGNPVRLGIMIFLLPR---RKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGM   81 (100)
T ss_dssp             HHHHSHHHHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHH
T ss_pred             HhcCCHHHHHHHHHhccC---CCeeHHHHHHHHhh----ccccccHHHHHHhhhceeEEEEcCcCCccccccCCHHHH
Confidence            344455678889999766   49999999999999    999999999999999999876321 11122477777664

>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Biotin repressor, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.0016  Score=41.76  Aligned_cols=55  Identities=15%  Similarity=0.271  Sum_probs=44.0

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccc
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN   99 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t   99 (333)
                      ++.|+..|.+.   +..|.+|||+.+|+    ....+++-++.|...|+.-+..    .+..|+++
T Consensus         7 ~~~iL~~L~~~---~~~s~~eLa~~l~v----S~~ti~r~i~~L~~~G~~I~~~----~g~GY~L~   61 (63)
T d1biaa1           7 PLKLIALLANG---EFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFTV----PGKGYSLP   61 (63)
T ss_dssp             HHHHHHHHTTS---SCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEEE----TTTEEECS
T ss_pred             HHHHHHHHHHC---CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCcEEEe----CCCeEEeC
Confidence            45678888775   58999999999999    9999999999999999844331    24468764

>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: SmtB repressor
species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]

Probab=96.29  E-value=0.0011  Score=46.58  Aligned_cols=52  Identities=15%  Similarity=0.309  Sum_probs=45.9

Q ss_pred             HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ++|.--.++.|+..|.+    ++.++.|||+.+|+    ++..+.+.|+.|...|+|...
T Consensus        18 kaL~~p~Rl~Il~~L~~----~~~~v~ela~~l~i----s~stvS~HL~~L~~aglV~~~   69 (98)
T d1r1ta_          18 AVLADPNRLRLLSLLAR----SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYR   69 (98)
T ss_dssp             HHHCCHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHhCCHHHHHHHHHHHc----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEE
Confidence            35555677888899976    59999999999999    999999999999999999986

>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Transcriptional regulator VC2007 N-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=96.21  E-value=0.0029  Score=41.51  Aligned_cols=46  Identities=20%  Similarity=0.354  Sum_probs=41.5

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +..|++.|...   |++|..|||+.+|+    .+.-+.+.++.|...|++.+.
T Consensus         8 ~~~Il~~l~~~---g~~sr~eLa~~~gl----S~~Tv~~~l~~L~~~Glv~e~   53 (71)
T d1z05a1           8 AGRVYKLIDQK---GPISRIDLSKESEL----APASITKITRELIDAHLIHET   53 (71)
T ss_dssp             HHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence            34588888887   59999999999999    999999999999999999875

>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal fragment of elongation factor SelB
domain: C-terminal fragment of elongation factor SelB
species: Moorella thermoacetica [TaxId: 1525]

Probab=96.15  E-value=0.0028  Score=40.66  Aligned_cols=53  Identities=15%  Similarity=0.140  Sum_probs=42.8

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccc
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYS   97 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~   97 (333)
                      -.|.+.+.++|- .|.++.|||+.+|+    ++..++.+|+.|+..|.+.+.     ..+.|-
T Consensus        10 ~~I~~~~~~~g~-~PP~vrdl~~~l~~----~e~~~~~lL~~l~~~G~lvkI-----~~d~yf   62 (64)
T d1lvaa3          10 KDLEDKYRVSRW-QPPSFKEVAGSFNL----DPSELEELLHYLVREGVLVKI-----NDEFYW   62 (64)
T ss_dssp             HHHHHHHHHHTT-SCCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEES-----SSSBEE
T ss_pred             HHHHHHHHHcCC-CCCcHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe-----cccccc
Confidence            344555555443 49999999999999    999999999999999999998     356654

>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Metal-sensing transcriptional repressor CzrA
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.15  E-value=0.0014  Score=45.75  Aligned_cols=51  Identities=24%  Similarity=0.342  Sum_probs=45.7

Q ss_pred             HHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           28 AMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        28 ~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +|.--.++.|+..|.+    |+.++.||++.+|+    .+..+.+.|+.|...|+|...
T Consensus        14 aL~d~~Rl~Il~~L~~----~~~~v~el~~~l~~----s~~~vS~HL~~L~~~glv~~~   64 (94)
T d1r1ua_          14 ALGDYNRIRIMELLSV----SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK   64 (94)
T ss_dssp             HTCSHHHHHHHHHHHH----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HhCCHHHHHHHHHHHc----CCccHHHHHHHHCC----CHHHHHHHHHHHHHCCceEEE
Confidence            5555677888999987    59999999999999    999999999999999999986

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0021  Score=51.72  Aligned_cols=76  Identities=16%  Similarity=0.228  Sum_probs=51.7

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hh---HhhhCCC---CCCeE-----------------EE-ccCChhH
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PH---VIEHVPP---HPCMW-----------------IL-HDWNDEH  245 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~---~~~~a~~---~~gv~-----------------vL-h~~~~~~  245 (333)
                      ..+++|||+|.|.-+..++-.+|+.+++.+|. ..   .++.+..   ..++.                 |. .-+.+..
T Consensus        66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~~~~  145 (207)
T d1jsxa_          66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFASLN  145 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSSSHH
T ss_pred             CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhcCHH
Confidence            46899999999999999999999999999997 32   2222211   12221                 11 2233332


Q ss_pred             HHHHHHHHHHhCCCCcEEEEEee
Q 035738          246 CLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       246 ~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                        .+++-+...++++|++++.-.
T Consensus       146 --~ll~~~~~~l~~~g~~~~~KG  166 (207)
T d1jsxa_         146 --DMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             --HHHHHHTTSEEEEEEEEEEES
T ss_pred             --HHHHHHHHhcCCCcEEEEECC
Confidence              677777778888888777653

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=96.04  E-value=0.0088  Score=48.80  Aligned_cols=79  Identities=13%  Similarity=0.060  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHH----HCCCCeEEEeec-hhHhhhCCC-CCCe----------------------EEEcc-
Q 035738          190 NIKQLVDVGGGIGVTLQAITT----KYPYIKGINFDL-PHVIEHVPP-HPCM----------------------WILHD-  240 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~----~~p~~~~~~~D~-~~~~~~a~~-~~gv----------------------~vLh~-  240 (333)
                      ++.+||+||+++|..+.-++.    ..++.+++++|+ +........ ..++                      .++-+ 
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~  159 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN  159 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence            478999999999987765443    347889999998 444332221 1111                      22211 


Q ss_pred             -CChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          241 -WNDEHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       241 -~~~~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                       .+.+.+..-+ .....|+|||.++|-|..
T Consensus       160 ~H~~~~v~~~~-~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         160 AHANTFNIMKW-AVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             SCSSHHHHHHH-HHHHTCCTTCEEEECSCH
T ss_pred             CcchHHHHHHH-HHhcccCcCCEEEEEcCC
Confidence             2233333334 466899999999988864

>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Putative transcriptional regulator TM1602, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.03  E-value=0.0048  Score=39.63  Aligned_cols=55  Identities=18%  Similarity=0.288  Sum_probs=44.2

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccc-eeeeccCCCcccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSV-VECSLDASGARRLYSLN   99 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~-l~~~~~~~~~~~~y~~t   99 (333)
                      -...|++.|.++.  +++|+++||+.+|+    +.+-++|-+..|...|+ +...      .+.|.+.
T Consensus         8 R~~~Il~~L~~~~--~~vs~~~La~~l~V----S~~TI~rdi~~L~~~G~~I~~~------~gGY~L~   63 (65)
T d1j5ya1           8 RLKSIVRILERSK--EPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVAT------PRGYVLA   63 (65)
T ss_dssp             HHHHHHHHHHHCS--SCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEEE------TTEEECC
T ss_pred             HHHHHHHHHHHcC--CCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEEe------CCCEEeC
Confidence            3456778887642  47999999999999    99999999999999997 5543      4578765

>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Cadmium efflux system accessory protein CadC
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.03  E-value=0.0024  Score=45.72  Aligned_cols=54  Identities=22%  Similarity=0.122  Sum_probs=48.9

Q ss_pred             HHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           26 PMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        26 ~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..+|.--.++.|+..|...   ++.++.||++.+|+    .+..+.+.|+.|...|+|...
T Consensus        25 ~kaLadp~Rl~Il~~L~~~---~~~~v~ela~~l~~----s~s~vS~HL~~L~~aGlv~~~   78 (108)
T d1u2wa1          25 LKAIADENRAKITYALCQD---EELCVCDIANILGV----TIANASHHLRTLYKQGVVNFR   78 (108)
T ss_dssp             HHHHHSHHHHHHHHHHHHS---SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred             HHHhCCHHHHHHHHHHHhC---CCccHHHHHHHHcc----ChhHHHHHHHHHHHCCeeEEE
Confidence            5677788899999999764   48999999999999    999999999999999999986

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.95  E-value=0.0014  Score=56.76  Aligned_cols=81  Identities=11%  Similarity=0.114  Sum_probs=55.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHH-----CCCCeEEEeec-hhHhhhCCCC-----CC----------------e-EEEc
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTK-----YPYIKGINFDL-PHVIEHVPPH-----PC----------------M-WILH  239 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~-----~p~~~~~~~D~-~~~~~~a~~~-----~g----------------v-~vLh  239 (333)
                      .....+|+|.+||+|.++..+..+     .++.+++++|+ +.++..|+.+     .+                . .|+.
T Consensus       115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~  194 (328)
T d2f8la1         115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS  194 (328)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred             CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccc
Confidence            456789999999999999988764     34567899999 7777665421     00                0 3333


Q ss_pred             cCC------hh---------------HHHHHHHHHHHhCCCCcEEEEEee
Q 035738          240 DWN------DE---------------HCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       240 ~~~------~~---------------~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      +.|      ++               .-...+.++.+.|+|||+++++-+
T Consensus       195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p  244 (328)
T d2f8la1         195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP  244 (328)
T ss_dssp             ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence            322      00               012468999999999999888776

>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.89  E-value=0.0036  Score=39.79  Aligned_cols=43  Identities=19%  Similarity=0.254  Sum_probs=39.6

Q ss_pred             ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .|++.|.+    ||+|..|||+.+|+    ...-+.++++.|...|++.+.
T Consensus         3 ~Il~~i~~----~pisr~eLa~~~gl----s~~TVs~~v~~L~~~GlV~e~   45 (62)
T d2hoea1           3 RILKRIMK----SPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEE   45 (62)
T ss_dssp             CSHHHHHH----SCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHH----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC
Confidence            57788887    59999999999999    999999999999999999986

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=95.56  E-value=0.012  Score=49.88  Aligned_cols=77  Identities=14%  Similarity=0.096  Sum_probs=59.5

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-------C----------------------Ce----
Q 035738          189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH-------P----------------------CM----  235 (333)
Q Consensus       189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~----------------------gv----  235 (333)
                      ++...||.+|||-=.....+ ...++++++-+|.|.+++..++.       +                      |.    
T Consensus        88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~  166 (297)
T d2uyoa1          88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA  166 (297)
T ss_dssp             TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred             hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence            45678999999988887766 34578889999999988632210       0                      00    


Q ss_pred             -------EEEccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 035738          236 -------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAV  266 (333)
Q Consensus       236 -------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~  266 (333)
                             .++++++++++.++|+.+.+...||+.|++-
T Consensus       167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d  204 (297)
T d2uyoa1         167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE  204 (297)
T ss_dssp             CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred             CEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence                   6788999999999999999999999886653

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=95.54  E-value=0.0059  Score=50.06  Aligned_cols=106  Identities=17%  Similarity=0.185  Sum_probs=67.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hh---HhhhCCC---CCCeEEEc---------------------
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PH---VIEHVPP---HPCMWILH---------------------  239 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~---~~~~a~~---~~gv~vLh---------------------  239 (333)
                      ++...+++|||+|.|.-+..++-.+|+.+++.+|. ..   .++.+.+   ..++.++|                     
T Consensus        68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s  147 (239)
T d1xdza_          68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA  147 (239)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             ccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence            34567999999999999999999999999999996 32   2222221   12222222                     


Q ss_pred             -cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeE
Q 035738          240 -DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGIS  318 (333)
Q Consensus       240 -~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~  318 (333)
                       -+.+-  ..++.-+...+++||++++.-.-..                           .-..++.++.+...|++..+
T Consensus       148 RAva~l--~~ll~~~~~~l~~~g~~i~~KG~~~---------------------------~~El~~a~~~~~~~~~~~~~  198 (239)
T d1xdza_         148 RAVARL--SVLSELCLPLVKKNGLFVALKAASA---------------------------EEELNAGKKAITTLGGELEN  198 (239)
T ss_dssp             ECCSCH--HHHHHHHGGGEEEEEEEEEEECC-C---------------------------HHHHHHHHHHHHHTTEEEEE
T ss_pred             hhhhCH--HHHHHHHhhhcccCCEEEEECCCCh---------------------------HHHHHHHHHHHHHcCCEEEE
Confidence             22222  2677777777888887766654100                           00133445677788888777


Q ss_pred             Eeec
Q 035738          319 CERA  322 (333)
Q Consensus       319 ~~~~  322 (333)
                      +...
T Consensus       199 v~~~  202 (239)
T d1xdza_         199 IHSF  202 (239)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6543

>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Mlc protein N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.0056  Score=39.94  Aligned_cols=46  Identities=17%  Similarity=0.292  Sum_probs=41.3

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +..|++.|..+   |++|..|||+.+|+    ....+.++++.|...|++.+.
T Consensus         7 ~~~Il~~i~~~---g~~sr~eLa~~~gL----S~~Tvs~iv~~L~~~glv~e~   52 (70)
T d1z6ra1           7 AGAVYRLIDQL---GPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQEL   52 (70)
T ss_dssp             HHHHHHHHHSS---CSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC
T ss_pred             HHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence            34578888887   59999999999999    999999999999999999874

>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein ywnA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.37  E-value=0.011  Score=43.40  Aligned_cols=45  Identities=24%  Similarity=0.332  Sum_probs=37.4

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS  100 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~  100 (333)
                      ++.|.++||+.+++    ++..++++|+.|...|+|+-.  -|. +|.| ++.
T Consensus        17 ~~~ss~~IA~~~~~----~~~~v~kIl~~L~~aglV~s~--rG~-~GGy-Lar   61 (127)
T d1xd7a_          17 EKTSSEIIADSVNT----NPVVVRRMISLLKKADILTSR--AGV-PGAS-LKK   61 (127)
T ss_dssp             SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC--SSS-SSCE-ESS
T ss_pred             CCCCHHHHHHHhCc----CHHHHHHHHHHHHHhCccccc--CCC-CCcc-ccC
Confidence            48999999999999    999999999999999999965  233 3445 653

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.0055  Score=50.77  Aligned_cols=51  Identities=10%  Similarity=0.269  Sum_probs=39.3

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP  231 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  231 (333)
                      ...+++... ......|||||||+|.++..|++...  +++.+|+ +..++..+.
T Consensus        10 ~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L~~   61 (252)
T d1qyra_          10 IDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERLD--QLTVIELDRDLAARLQT   61 (252)
T ss_dssp             HHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTCS--CEEEECCCHHHHHHHHT
T ss_pred             HHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccCC--ceEEEEeccchhHHHHH
Confidence            455666665 77788999999999999999998764  5788888 666665543

>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF1790-like
domain: Transcriptional regulatory protein PF1790
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.30  E-value=0.0064  Score=48.23  Aligned_cols=68  Identities=15%  Similarity=0.245  Sum_probs=52.4

Q ss_pred             HHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeecc---CCCcccccccccccc
Q 035738           28 AMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLD---ASGARRLYSLNSVSK  103 (333)
Q Consensus        28 ~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~~y~~t~~~~  103 (333)
                      +|.--.+..|++.|.+    ||.|+.|||+.+|+    ++..+++.|+.|...|+|.....   .|.....|.++..+.
T Consensus        11 ~l~~~~R~~Il~~L~~----~~~~~~ela~~l~~----s~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~~   81 (194)
T d2p4wa1          11 VLGNETRRRILFLLTK----RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR   81 (194)
T ss_dssp             HHHSHHHHHHHHHHHH----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred             HhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeecCCCCceEEEEecccce
Confidence            3444456778888877    59999999999999    99999999999999999986531   122234578777654

>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Ta1064 (RFK), N-terminal domain
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=95.17  E-value=0.0043  Score=42.22  Aligned_cols=51  Identities=16%  Similarity=0.175  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKY  104 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~  104 (333)
                      +++|..+||+.+++    .+..+.++|+.|...|++.++. ++ ..-.+.+|+.+..
T Consensus        20 ~~lt~~eLa~~l~i----~~~~vs~~l~~Le~~GlV~r~~-D~-R~~~i~LT~~G~~   70 (85)
T d3ctaa1          20 AYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTV-TK-RGQILNITEKGLD   70 (85)
T ss_dssp             EECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-ET-TEEEEEECHHHHH
T ss_pred             CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeeec-cc-ccccceECHHHHH
Confidence            58999999999999    9999999999999999999973 11 1233566666543

>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical protein AF2008
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.05  E-value=0.0084  Score=42.73  Aligned_cols=46  Identities=17%  Similarity=0.322  Sum_probs=40.2

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +..++..|...   |+.|+.|||+.+|+    +...+.+.|+-|...|++.+.
T Consensus        22 e~~v~~~L~~~---g~~t~~eia~~~~i----~~~~v~~~l~~L~~~GlV~r~   67 (109)
T d1sfxa_          22 DVRIYSLLLER---GGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE   67 (109)
T ss_dssp             HHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHhc---CCCCHHHHHHHhCC----CcchHHHHHHHHHhCCCEEEE
Confidence            44466777766   49999999999999    999999999999999999875

>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Hypothetical protein PH1932
domain: Hypothetical protein PH1932
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.03  E-value=0.0089  Score=47.13  Aligned_cols=69  Identities=13%  Similarity=0.173  Sum_probs=52.9

Q ss_pred             HHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeecc---CCCccccccccccc
Q 035738           26 PMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLD---ASGARRLYSLNSVS  102 (333)
Q Consensus        26 ~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~~y~~t~~~  102 (333)
                      ..+|.--.+..|++.|.+    ||.|+.|||+.+|+    ++..+.+.|+.|...|+|.....   .|.....|.+|+.+
T Consensus        13 ~~~l~~p~R~~Il~~L~~----~~~s~~ela~~lg~----s~~~v~~hl~~L~~~glv~~~~~~~~~g~~~k~y~~~~~~   84 (190)
T d1ulya_          13 IKVMLEDTRRKILKLLRN----KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTADV   84 (190)
T ss_dssp             HHHHHSHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSSE
T ss_pred             HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeeccCCcceEEEEEcccc
Confidence            456666778889999976    59999999999999    99999999999999999975421   11112346666543

>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical transcriptional regulator ST1889
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=95.02  E-value=0.0066  Score=43.27  Aligned_cols=47  Identities=9%  Similarity=0.172  Sum_probs=38.6

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      ..++..|...+  ||+|+.+||+.+|+    ++..+.+.|+.|...|+|.+..
T Consensus        24 ~~iL~~L~~~~--~~~t~~eLa~~~~i----~~~tvs~~l~~L~~~GlV~r~~   70 (109)
T d2d1ha1          24 VAVLLKMVEIE--KPITSEELADIFKL----SKTTVENSLKKLIELGLVVRTK   70 (109)
T ss_dssp             HHHHHHHHHHC--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHcC--CCCCHHHHHHHHCc----cHhHHHHHHHHHHHCCCEEEee
Confidence            33555554332  58999999999999    9999999999999999999863

>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.019  Score=35.06  Aligned_cols=52  Identities=23%  Similarity=0.419  Sum_probs=40.4

Q ss_pred             HhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccc
Q 035738           40 IIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSL   98 (333)
Q Consensus        40 ~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~   98 (333)
                      .|..-|++...|+.+||.++++    +..-+.|.|..|...|-+.+..   ..+..|++
T Consensus         7 ~l~~lg~~~~~tA~~LA~kl~v----pKk~iNr~LYsL~~kgkl~k~~---gtPPlWr~   58 (59)
T d2gxba1           7 FLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA---GTPPLWKI   58 (59)
T ss_dssp             HHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC---SSSCEEEE
T ss_pred             HHHhcCCccchhHHHHHHHhCC----cHHHHHHHHHHHHHccchhhcC---CCCCCccc
Confidence            3333334468999999999999    8999999999999999999862   24555553

>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Archaeal DNA-binding protein
domain: Sso10a (SSO10449)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.75  E-value=0.011  Score=40.51  Aligned_cols=49  Identities=10%  Similarity=0.174  Sum_probs=44.2

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccccccc
Q 035738           49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVP  107 (333)
Q Consensus        49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~  107 (333)
                      +.+...|...+++    +...+...|+.|...|++.+.      ++.|.+|+.+..|+.
T Consensus        18 g~~kT~i~~~aNL----s~~~~~kyl~~L~~~GLI~~~------~~~Y~iT~kG~~~L~   66 (90)
T d1r7ja_          18 GSPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE------GKQYMLTKKGEELLE   66 (90)
T ss_dssp             CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------TTEEEECHHHHHHHH
T ss_pred             CCCccHHHHHcCC----CHHHHHHHHHHHHHCCCeeec------CCEEEECccHHHHHH
Confidence            4578999999999    999999999999999999876      789999999987764

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.022  Score=47.62  Aligned_cols=48  Identities=19%  Similarity=0.388  Sum_probs=37.1

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhh
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEH  228 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~  228 (333)
                      ...+++... .....+|||||+|.|.++..|++..+  +++.+++ +..++.
T Consensus        10 ~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~   58 (278)
T d1zq9a1          10 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAE   58 (278)
T ss_dssp             HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHH
T ss_pred             HHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHH
Confidence            455666665 67788999999999999999999865  6777777 455444

>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator TM0710
species: Thermotoga maritima [TaxId: 2336]

Probab=94.39  E-value=0.027  Score=41.67  Aligned_cols=65  Identities=11%  Similarity=0.129  Sum_probs=46.7

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeecc-CCCccccccccccccccc
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLD-ASGARRLYSLNSVSKYYV  106 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~-~~~~~~~y~~t~~~~~l~  106 (333)
                      .-++..|...   ++.|+.+||+.+++    +...+.+.++-|...|++.+... ++.-.-.+.+|+.+..+.
T Consensus        33 ~~iL~~i~~~---~~~t~~~la~~l~i----~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~   98 (139)
T d2a61a1          33 FDILQKIYFE---GPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI   98 (139)
T ss_dssp             HHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHc---CCCCHHHHHHHhCC----CcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHH
Confidence            3345556655   48999999999999    99999999999999999998631 000123356666665443

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.30  E-value=0.086  Score=45.01  Aligned_cols=83  Identities=14%  Similarity=0.262  Sum_probs=66.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCC------------------------------C-------
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPP------------------------------H-------  232 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------------------------~-------  232 (333)
                      +...|+-+|||.=.....+...+|+++++=+|.|++++.-++                              +       
T Consensus        96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL  175 (328)
T d1rjda_          96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL  175 (328)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred             CCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCC
Confidence            456899999999999999998999999999999988763211                              0       


Q ss_pred             -----------CC-------e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 035738          233 -----------PC-------M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEV  273 (333)
Q Consensus       233 -----------~g-------v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~  273 (333)
                                 .+       +    .||.+++++++.++|+.+.+.++ ++.+++.|++.+..
T Consensus       176 ~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~~~~  237 (328)
T d1rjda_         176 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIGGSQ  237 (328)
T ss_dssp             TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCCCS
T ss_pred             CCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCCCCC
Confidence                       00       0    88899999999999999998885 57889999986543

>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: LprA
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.20  E-value=0.024  Score=35.52  Aligned_cols=46  Identities=22%  Similarity=0.341  Sum_probs=40.7

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      +..|...|.+.   +..|..+||+++|+    ++..+.+-++.|...|++...
T Consensus         5 D~kIl~~L~~n---~r~s~~~lA~~~gl----s~~~v~~Ri~~L~~~giI~~~   50 (60)
T d1i1ga1           5 DKIILEILEKD---ARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEGY   50 (60)
T ss_dssp             HHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeE
Confidence            55678888876   59999999999999    999999999999999999853

>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein BC1842
species: Bacillus cereus [TaxId: 1396]

Probab=94.19  E-value=0.013  Score=43.53  Aligned_cols=44  Identities=16%  Similarity=0.190  Sum_probs=36.8

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccc
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN   99 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t   99 (333)
                      .+.|.++||+.+++    ++..++++|+.|...|+|+-..  |  .+.|.+.
T Consensus        22 ~~vss~~IA~~~~i----~~~~l~kil~~L~~aGlv~S~r--G--~GG~~L~   65 (138)
T d1ylfa1          22 SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR--G--PGGAGLL   65 (138)
T ss_dssp             GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC-------CCEEES
T ss_pred             CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeec--C--CCCceec
Confidence            48999999999999    9999999999999999998752  3  3566654

>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Probable transcriptional regulator PA3067
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.14  E-value=0.017  Score=43.20  Aligned_cols=68  Identities=25%  Similarity=0.302  Sum_probs=48.1

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeecc-CCCcccccccccccccc
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLD-ASGARRLYSLNSVSKYY  105 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~-~~~~~~~y~~t~~~~~l  105 (333)
                      ..++.++..|...+  |++|+.+||+.+++    ++..+.++++-|...|+|.+... ++...-.+.+|+.+..+
T Consensus        34 ~~q~~vL~~L~~~~--g~~t~~~La~~~~~----~~~~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~  102 (145)
T d2hr3a1          34 FSQLVVLGAIDRLG--GDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRN  102 (145)
T ss_dssp             HHHHHHHHHHHHTT--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHH
T ss_pred             HHHHHHHHHHHHcC--CCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeeeCccchhHHHhccCHHHHHH
Confidence            34566667776543  58999999999999    99999999999999999998731 01111235555555433

>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Putative transcriptional regulator PH1519
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.10  E-value=0.027  Score=35.19  Aligned_cols=47  Identities=17%  Similarity=0.195  Sum_probs=41.8

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .+..|...|.+.   +..|..|||+++|+    ++..+.+=++.|...|++...
T Consensus         4 ~D~~Il~~L~~n---~r~s~~eiA~~l~l----s~~~v~~Ri~~L~~~giI~~~   50 (60)
T d2cyya1           4 IDKKIIKILQND---GKAPLREISKITGL----AESTIHERIRKLRESGVIKKF   50 (60)
T ss_dssp             HHHHHHHHHHHC---TTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeE
Confidence            456788889886   58999999999999    999999999999999999854

>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Putative transcriptional regulator YusO
species: Bacillus subtilis [TaxId: 1423]

Probab=94.06  E-value=0.06  Score=39.85  Aligned_cols=63  Identities=17%  Similarity=0.231  Sum_probs=47.2

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccc---ccccccccccc
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRL---YSLNSVSKYYV  106 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~---y~~t~~~~~l~  106 (333)
                      ..++..|...   ++.|+.+||+.+++    ++..+.+.++.|...|++.+.+.  +++.+   +.+|+.+..+.
T Consensus        38 ~~iL~~l~~~---~~~t~~~la~~~~i----~~~~vs~~l~~L~~~glv~r~~~--~~D~R~~~v~lT~~G~~~~  103 (143)
T d1s3ja_          38 LFVLASLKKH---GSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHN--TKDRRVIDLSLTDEGDIKF  103 (143)
T ss_dssp             HHHHHHHHHH---SEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEC--SSCTTSEEEEECHHHHHHH
T ss_pred             HHHHHHHHHC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHhhhheeeee--cCCCCceEEEECHHHHHHH
Confidence            3466777776   48999999999999    99999999999999999998741  11222   55565554433

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=93.89  E-value=0.028  Score=43.89  Aligned_cols=39  Identities=15%  Similarity=0.066  Sum_probs=31.9

Q ss_pred             CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC
Q 035738          191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP  230 (333)
Q Consensus       191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~  230 (333)
                      ..+|||+-||||.++.+.+.+... +++.+|. +.+++..+
T Consensus        44 ~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik   83 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLK   83 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHH
T ss_pred             cceEeecccCccceeeeeeeecce-eeEEeecccchhhhHh
Confidence            468999999999999999988765 7888998 66665443

>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: MexR repressor
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.85  E-value=0.081  Score=39.08  Aligned_cols=49  Identities=18%  Similarity=0.325  Sum_probs=41.2

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      ..+.-++..|...   ++.|..+||+.+++    ++..+.+.++.|...|+|++.+
T Consensus        36 ~~q~~vL~~l~~~---~~~t~~~la~~l~~----~~~~vsr~l~~L~~~G~v~r~~   84 (141)
T d1lnwa_          36 PPDVHVLKLIDEQ---RGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRER   84 (141)
T ss_dssp             HHHHHHHHHHHSS---TTCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHHHC---CCCCHHHHHHHHCc----cHhHHHHHHHHHHHhhceeeec
Confidence            3445566667665   37999999999999    9999999999999999999874

>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Putative transcriptional regulator TM0816
species: Thermotoga maritima [TaxId: 2336]

Probab=93.84  E-value=0.018  Score=42.69  Aligned_cols=49  Identities=18%  Similarity=0.154  Sum_probs=42.9

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      ..+.-++..|...   ++.|+.+||+.+++    ++..+.+.++.|...|++.+..
T Consensus        32 ~~q~~iL~~l~~~---~~~t~~~La~~l~i----~~~~vs~~v~~L~~~gli~r~~   80 (140)
T d2etha1          32 TTELYAFLYVALF---GPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREM   80 (140)
T ss_dssp             HHHHHHHHHHHHH---CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeee
Confidence            3455577788877   48999999999999    9999999999999999999874

>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Transcriptional regulator LrpC
species: Bacillus subtilis [TaxId: 1423]

Probab=93.59  E-value=0.037  Score=34.98  Aligned_cols=47  Identities=21%  Similarity=0.430  Sum_probs=41.6

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .+..|.+.|.+.   +..|..+||+.+|+    ++.-+.+=++-|...|++...
T Consensus         6 ~D~~IL~~L~~n---~r~s~~~iA~~lgi----s~~tv~~Ri~~L~~~giI~~~   52 (63)
T d2cfxa1           6 IDLNIIEELKKD---SRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQY   52 (63)
T ss_dssp             HHHHHHHHHHHC---SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeE
Confidence            356688889886   59999999999999    999999999999999999854

>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DNA-binding protein Mj223
domain: DNA-binding protein Mj223
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.54  E-value=0.033  Score=41.70  Aligned_cols=47  Identities=19%  Similarity=0.205  Sum_probs=39.6

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      ..++-.|..++  +|+|+.|||+.+|+    +...+.+.++-|...|++.+..
T Consensus        29 ~~i~~~L~~~~--~plt~~ela~~l~v----sk~~vs~~l~~L~~~GlV~r~~   75 (151)
T d1ku9a_          29 GAVYAILYLSD--KPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKVW   75 (151)
T ss_dssp             HHHHHHHHHCS--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHHHHHHhCC--CCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCEEEEE
Confidence            34555665443  58999999999999    9999999999999999999874

>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Regulatory protein AsnC
species: Escherichia coli [TaxId: 562]

Probab=93.53  E-value=0.033  Score=35.19  Aligned_cols=47  Identities=15%  Similarity=0.287  Sum_probs=41.8

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .+..|...|.+.   +..|..|||+++|+    ++..+.+=++.|...|++...
T Consensus         6 ~D~~IL~~L~~~---~r~s~~eiA~~l~l----s~~~v~~Ri~rL~~~GiI~~~   52 (63)
T d2cg4a1           6 LDRGILEALMGN---ARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITGA   52 (63)
T ss_dssp             HHHHHHHHHHHC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeE
Confidence            356688889886   59999999999999    999999999999999999954

>d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein PA1607
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.49  E-value=0.032  Score=41.58  Aligned_cols=75  Identities=15%  Similarity=0.084  Sum_probs=56.1

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccc
Q 035738           15 YANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARR   94 (333)
Q Consensus        15 ~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~   94 (333)
                      ..++++..-|...+|+.+         ..    |+....||.+.+|+    .+..|.+=|+.|...|++.+.....+...
T Consensus        12 ~~l~ilg~kW~l~Il~~l---------~~----G~~rf~el~~~lgi----s~~vLs~rL~~L~~~gLv~r~~~~~p~r~   74 (142)
T d2f2ea1          12 RPLDVIGDGWSMLIVRDA---------FE----GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGSHQ   74 (142)
T ss_dssp             TTHHHHCSSSHHHHHHHH---------HT----TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSSCE
T ss_pred             HHHHHHcCCCHHHHHHHH---------Hc----CCCCHHHHHHHhhc----cHHHHHHHHHHHHHhcceeeecCCCCCee
Confidence            345566666666666543         23    58999999999999    89999999999999999998543332344


Q ss_pred             cccccccccccc
Q 035738           95 LYSLNSVSKYYV  106 (333)
Q Consensus        95 ~y~~t~~~~~l~  106 (333)
                      .|++|+.+..|.
T Consensus        75 ~Y~LT~~G~~L~   86 (142)
T d2f2ea1          75 EYRLTDKGRALF   86 (142)
T ss_dssp             EEEECHHHHTTH
T ss_pred             EEecCcCcchHH
Confidence            599888887665

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.47  E-value=0.066  Score=42.08  Aligned_cols=83  Identities=17%  Similarity=0.105  Sum_probs=58.8

Q ss_pred             CCCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-C----------------------Ce-EEEccC
Q 035738          188 FDNIKQLVDVGGGI-GVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-P----------------------CM-WILHDW  241 (333)
Q Consensus       188 ~~~~~~vlDVGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~----------------------gv-~vLh~~  241 (333)
                      .....+||.+|||. |..+..+++.....++++.|. +.-++.+++. .                      |+ .++...
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~v  102 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAV  102 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECc
Confidence            77888999999997 667778888888778999998 7777776653 0                      11 222211


Q ss_pred             C------------hhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738          242 N------------DEHCLKLLKNCYKSIPEDGKVIAVELML  270 (333)
Q Consensus       242 ~------------~~~~~~lL~~~~~~L~pgG~l~i~e~~~  270 (333)
                      .            .......|+.+.+.++|||+++++-...
T Consensus       103 G~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~  143 (195)
T d1kola2         103 GFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYV  143 (195)
T ss_dssp             CTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCC
T ss_pred             cccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecC
Confidence            1            0012368999999999999999886533

>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator MgrA
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.09  E-value=0.053  Score=39.85  Aligned_cols=66  Identities=8%  Similarity=0.142  Sum_probs=47.7

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCcccccccccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYY  105 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l  105 (333)
                      .+..++..|...   ++.|..+||+.+++    ++..+.++++-|...|++++.... +.......+|+.+..+
T Consensus        35 ~q~~vL~~i~~~---~~~t~~~la~~l~~----~~~~~s~~l~~L~~~Gli~r~~~~~D~R~~~l~lT~~G~~~  101 (136)
T d2bv6a1          35 PQFLVLTILWDE---SPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETI  101 (136)
T ss_dssp             HHHHHHHHHHHS---SEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHH
T ss_pred             HHHHHHHHHHcC---CCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEEeecCCcccchhhccCHHHHHH
Confidence            344556667765   48999999999999    999999999999999999987421 1011234556666443

>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Iron-dependent repressor protein
domain: Manganese transport regulator MntR
species: Bacillus subtilis [TaxId: 1423]

Probab=93.06  E-value=0.05  Score=34.08  Aligned_cols=35  Identities=20%  Similarity=0.248  Sum_probs=32.5

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ++.+..+||+.+|+    .+.-+...++-|...|+++..
T Consensus        20 ~~v~~~~iA~~L~v----s~~SVs~mikrL~~~GlV~~~   54 (61)
T d2ev0a1          20 GYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE   54 (61)
T ss_dssp             SSCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-
T ss_pred             CCccHHHHHHHhCC----CchhHHHHHHHHHHCCCEEEc
Confidence            58999999999999    899999999999999999986

>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator OEOE1854
species: Oenococcus oeni [TaxId: 1247]

Probab=92.98  E-value=0.038  Score=40.56  Aligned_cols=69  Identities=6%  Similarity=0.151  Sum_probs=48.9

Q ss_pred             HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCcccccccccccccc
Q 035738           32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYY  105 (333)
Q Consensus        32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l  105 (333)
                      ..++.++..|...+ ++++|..|||+.+++    +...+.++++.|...|++.+.... ....-.+.+|+.+..+
T Consensus        29 ~~q~~vL~~l~~~~-~~~it~~ela~~~~~----~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~   98 (135)
T d3broa1          29 GTQMTIIDYLSRNK-NKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKL   98 (135)
T ss_dssp             HHHHHHHHHHHHTT-TSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTT
T ss_pred             HHHHHHHHHHHHcC-CCCCCHHHHHHHHCc----CHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHH
Confidence            34445566666542 257999999999999    999999999999999999987421 1112246666665443

>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Multiple antibiotic resistance repressor, MarR
species: Escherichia coli [TaxId: 562]

Probab=92.92  E-value=0.065  Score=39.46  Aligned_cols=67  Identities=18%  Similarity=0.120  Sum_probs=48.4

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCC-Cccccccccccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYYV  106 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~-~~~~~y~~t~~~~~l~  106 (333)
                      .+..+...|...   ++.|..+||+.+++    ++..+.+++..|...|++++.+..+ ...-.+++|+.+..+.
T Consensus        35 ~q~~vL~~l~~~---~~~t~~ela~~~~i----~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~  102 (138)
T d1jgsa_          35 AQFKVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC  102 (138)
T ss_dssp             HHHHHHHHHHHH---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHhHHhC---cCCCHHHHHHHHCC----CHhHHHHHHHHHhhCCCEEEeeccCCCCeeEEEECHHHHHHH
Confidence            345556666665   48999999999999    9999999999999999999864211 1112466666655443

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=92.90  E-value=0.076  Score=45.82  Aligned_cols=51  Identities=16%  Similarity=0.217  Sum_probs=40.0

Q ss_pred             HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      ..+.+.+. ..+..+|+|+-||+|.++..|++..  .+++++|. +..++.|+++
T Consensus       202 ~~v~~~~~-~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~n  253 (358)
T d1uwva2         202 ARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQN  253 (358)
T ss_dssp             HHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHhhc-cCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHh
Confidence            34444444 6677899999999999999998865  46899999 8888887754

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.84  E-value=0.23  Score=37.94  Aligned_cols=78  Identities=13%  Similarity=0.027  Sum_probs=57.4

Q ss_pred             CCCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-C-----------------------Ce-EEEcc
Q 035738          188 FDNIKQLVDVGGGI-GVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-P-----------------------CM-WILHD  240 (333)
Q Consensus       188 ~~~~~~vlDVGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~-----------------------gv-~vLh~  240 (333)
                      .+...+||-+|||. |..+..+++.....++++.|. +.-++.+++. .                       |+ .++..
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~  105 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC  105 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence            67788999999987 888889999887778889998 6666666653 0                       01 33333


Q ss_pred             CChhHHHHHHHHHHHhCCCC-cEEEEEee
Q 035738          241 WNDEHCLKLLKNCYKSIPED-GKVIAVEL  268 (333)
Q Consensus       241 ~~~~~~~~lL~~~~~~L~pg-G~l~i~e~  268 (333)
                      -..+   ..+....+.++|| |+++++=.
T Consensus       106 ~G~~---~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2         106 AGTA---QTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             SCCH---HHHHHHHHTBCTTTCEEEECCC
T ss_pred             cccc---hHHHHHHHHhhcCCeEEEecCC
Confidence            3333   5788999999997 99988754

>d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.047  Score=35.23  Aligned_cols=60  Identities=12%  Similarity=0.096  Sum_probs=48.6

Q ss_pred             HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCc-ccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738           33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAP-MMLDRILRLLASYSVVECSLDASGARRLYSLNSVS  102 (333)
Q Consensus        33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~-~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~  102 (333)
                      .+..|++.|...   |+.|+-.||..+|+    .. .-+.+.|..|...|-+.+.   |..+..|.++.-.
T Consensus         6 ~eekI~~~L~~~---g~~~Al~iak~lGl----~kakeVN~~LY~L~k~g~v~k~---~~tPP~W~L~~~~   66 (73)
T d1xmka1           6 IKEKICDYLFNV---SDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQ---GTTPPIWHLTDKK   66 (73)
T ss_dssp             HHHHHHHHHHHT---CCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEE---CSSSCEEEECHHH
T ss_pred             HHHHHHHHHHHc---CCchHHHHHHHhCC----CcHHHHhHHHHHHHHCCCeecC---CCCCCceeeecch
Confidence            466788999987   58999999999999    66 3599999999999999986   2246678877543

>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: LexA repressor, N-terminal DNA-binding domain
domain: LexA repressor, N-terminal DNA-binding domain
species: Escherichia coli [TaxId: 562]

Probab=92.80  E-value=0.07  Score=34.48  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=32.8

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      -|.|..|||+.+|++   .+..+.+.|..|...|++++.
T Consensus        23 ~~Ps~rei~~~~g~~---S~stv~~~l~~Le~kG~I~r~   58 (71)
T d1jhfa1          23 MPPTRAEIAQRLGFR---SPNAAEEHLKALARKGVIEIV   58 (71)
T ss_dssp             SCCCHHHHHHHTTCS---SHHHHHHHHHHHHHTTSEEEC
T ss_pred             CCCCHHHHHHHcCCC---CHHHHHHHHHHHHHCcCeecC
Confidence            488999999999994   677899999999999999986

>d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Putative transcriptional regulator YtcD
species: Bacillus subtilis [TaxId: 1423]

Probab=92.74  E-value=0.061  Score=37.00  Aligned_cols=55  Identities=18%  Similarity=0.210  Sum_probs=43.8

Q ss_pred             CCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeeecc-CCCccccccccccccccc
Q 035738           48 AKLSASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECSLD-ASGARRLYSLNSVSKYYV  106 (333)
Q Consensus        48 g~~t~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~~~-~~~~~~~y~~t~~~~~l~  106 (333)
                      |+....||.+.+ |+    ++..|.+=|+.|...|++++... +.+..-.|++|+.+..+.
T Consensus        23 g~~rF~el~~~l~gi----s~~~Ls~rLk~Le~~glv~r~~~~~~p~~veY~LT~~G~~L~   79 (95)
T d2hzta1          23 GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE   79 (95)
T ss_dssp             CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred             CCCCHHHHHHHhhcC----ChhHHHHHHHHHHHhHHHhheeccccccchhhhhhhhHHHHH
Confidence            588999999998 89    99999999999999999998642 122223488888887665

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.49  Score=35.64  Aligned_cols=79  Identities=11%  Similarity=0.066  Sum_probs=55.1

Q ss_pred             CCCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CC------------------------e-EEEc
Q 035738          188 FDNIKQLVDVGGGI-GVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PC------------------------M-WILH  239 (333)
Q Consensus       188 ~~~~~~vlDVGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~g------------------------v-~vLh  239 (333)
                      .....+|+-+|+|. |..+..+++.....++++.|. +.-++.+++. ..                        + .++.
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid  103 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE  103 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence            66778999999875 455556677666558999998 7777776653 11                        0 2222


Q ss_pred             cCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          240 DWNDEHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       240 ~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                      ....+   ..++.+.+.++|||+++++-..
T Consensus       104 ~~G~~---~~~~~a~~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2         104 CTGAE---ASIQAGIYATRSGGTLVLVGLG  130 (171)
T ss_dssp             CSCCH---HHHHHHHHHSCTTCEEEECSCC
T ss_pred             ccCCc---hhHHHHHHHhcCCCEEEEEecC
Confidence            22222   5788999999999999998753

>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcription factor E/IIe-alpha, N-terminal domain
domain: Transcription factor E/IIe-alpha, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.59  E-value=0.054  Score=36.33  Aligned_cols=45  Identities=22%  Similarity=0.338  Sum_probs=38.5

Q ss_pred             ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .|++.|.+.+  +.+|=++||+++|+    ...-+++.|..|...|++...
T Consensus        22 ~v~~~L~~~~--~evtDe~iA~~tgi----~in~VRk~Ly~L~~~~L~~y~   66 (88)
T d1q1ha_          22 DVLRILLDKG--TEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR   66 (88)
T ss_dssp             HHHHHHHHHC--SCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHhcc--CcCCHHHHHHHhCC----cHHHHHHHHHHHHhCCceEEE
Confidence            4777776432  47999999999999    999999999999999999765

>d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Dlm-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.50  E-value=0.055  Score=32.14  Aligned_cols=54  Identities=15%  Similarity=0.279  Sum_probs=45.3

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccc
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSL   98 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~   98 (333)
                      |-.|++.|.+.|  +|..+.+|++++++    +..-+.++|..|...+=+...     ++..|++
T Consensus         3 EQkILQVL~dag--spvk~~ql~k~cqV----pkk~lNqVL~rlkke~kVsl~-----~patW~l   56 (57)
T d1j75a_           3 EQKILQVLSDDG--GPVKIGQLVKKCQV----PKKTLNQVLYRLKKEDRVSSP-----EPATWSI   56 (57)
T ss_dssp             HHHHHHHHHHHC--SCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEE-----ETTEEEE
T ss_pred             HHHHHHHHHhcC--CchHHHHHHHHHCC----CHHHHHHHHHHHHhccccccC-----CCccccC
Confidence            556888999876  79999999999999    889999999999998888776     3555553

>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator PA3341
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.36  E-value=0.048  Score=40.10  Aligned_cols=45  Identities=16%  Similarity=0.162  Sum_probs=37.4

Q ss_pred             hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      +.-.|...+  ++.|..+||+.+++    ++..+.++++.|...|++.+.+
T Consensus        33 iL~~l~~~~--~~~t~~~la~~~~~----~~~~vs~~v~~L~~~gli~r~~   77 (137)
T d2fbha1          33 VLLHLARHR--DSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLA   77 (137)
T ss_dssp             HHHHHHHCS--SCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHHHHHcC--CCCcHHHHHHHHCC----CHHHHHHHHHHHHHcCCccccC
Confidence            344455433  36899999999999    9999999999999999999873

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=91.98  E-value=0.51  Score=35.41  Aligned_cols=77  Identities=14%  Similarity=0.122  Sum_probs=53.9

Q ss_pred             CCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CC--------------------------e-EE
Q 035738          188 FDNIKQLVDVGGG-IGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PC--------------------------M-WI  237 (333)
Q Consensus       188 ~~~~~~vlDVGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~g--------------------------v-~v  237 (333)
                      .....+||-+||| .|..+..+++... .+++++|. +.-++.+++. .+                          + .+
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~G-a~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v  102 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT  102 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhc-ccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence            6677899999988 5667777777654 69999998 6666666543 11                          0 23


Q ss_pred             EccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      +..-..+   ..++.+.+.++|+|+++++-.
T Consensus       103 id~~g~~---~~~~~a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2         103 IDCSGNE---KCITIGINITRTGGTLMLVGM  130 (170)
T ss_dssp             EECSCCH---HHHHHHHHHSCTTCEEEECSC
T ss_pred             eecCCCh---HHHHHHHHHHhcCCceEEEec
Confidence            3322222   578888899999999998864

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.97  E-value=0.26  Score=37.18  Aligned_cols=72  Identities=17%  Similarity=0.148  Sum_probs=52.4

Q ss_pred             eEEEEcCCc--cHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCC--C-------------e-EEEccCChhHHHHHHHHH
Q 035738          193 QLVDVGGGI--GVTLQAITTKYPYIKGINFDL-PHVIEHVPPHP--C-------------M-WILHDWNDEHCLKLLKNC  253 (333)
Q Consensus       193 ~vlDVGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~--g-------------v-~vLh~~~~~~~~~lL~~~  253 (333)
                      +|+=||||.  |.++..|.+..++.+++++|. +..++.+++.-  +             . .++-..+.+....+|+++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~vl~~l   82 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKL   82 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHHHHH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhhhhhhh
Confidence            588899984  346667777778889999998 77777665420  0             0 555556777788999999


Q ss_pred             HHhCCCCcEEE
Q 035738          254 YKSIPEDGKVI  264 (333)
Q Consensus       254 ~~~L~pgG~l~  264 (333)
                      ...++++..+.
T Consensus        83 ~~~~~~~~ii~   93 (171)
T d2g5ca2          83 SYILSEDATVT   93 (171)
T ss_dssp             HHHSCTTCEEE
T ss_pred             hcccccccccc
Confidence            99999986543

>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Iron-dependent repressor protein
domain: Iron-dependent regulator IdeR
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.94  E-value=0.11  Score=32.66  Aligned_cols=35  Identities=9%  Similarity=0.119  Sum_probs=33.2

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ++.+..+||+.+|+    .+.-+-+.++-|...|++...
T Consensus        22 ~~v~~~~iA~~L~v----s~~SVt~mvkrL~~~Glv~~~   56 (63)
T d2isya1          22 VTPLRARIAERLDQ----SGPTVSQTVSRMERDGLLRVA   56 (63)
T ss_dssp             CCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred             CCCcHHHHHHHhCC----CchhHHHHHHHHHHCCCEEEc
Confidence            58999999999999    899999999999999999986

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=91.22  E-value=0.06  Score=47.81  Aligned_cols=90  Identities=14%  Similarity=0.105  Sum_probs=57.3

Q ss_pred             HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCC-------------CCeEEEeec-hhHhhhCCCC----------C
Q 035738          178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYP-------------YIKGINFDL-PHVIEHVPPH----------P  233 (333)
Q Consensus       178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~~----------~  233 (333)
                      +..+++.+. .....+|+|-.||+|.++..+.++..             .....++|+ +.....|+-+          .
T Consensus       151 v~~mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~  229 (425)
T d2okca1         151 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS  229 (425)
T ss_dssp             HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred             hHhhheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence            444455454 55678999999999999998876532             134788888 6665544310          0


Q ss_pred             Ce---------------EEEccCC--------------------hhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          234 CM---------------WILHDWN--------------------DEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       234 gv---------------~vLh~~~--------------------~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      ++               .|+-+.|                    ...-...+.++.+.|+|||++.++-+
T Consensus       230 ~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p  299 (425)
T d2okca1         230 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  299 (425)
T ss_dssp             SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence            10               2222211                    11123588999999999999888866

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.20  E-value=0.06  Score=45.05  Aligned_cols=40  Identities=15%  Similarity=0.175  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhh
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIE  227 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~  227 (333)
                      ...+.+|||+-+|.|.=+..++....+.+++..|. +.-+.
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~  140 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLS  140 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHH
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhh
Confidence            56778999999999999999998888888999998 44443

>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal domain of RPA32
domain: C-terminal domain of RPA32
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.17  E-value=0.12  Score=32.98  Aligned_cols=58  Identities=10%  Similarity=0.184  Sum_probs=45.3

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccc
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN   99 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t   99 (333)
                      ...||+.|...+...++++.+|++++ ++    +..-++.-++.|.+.|++--.-    +++.|..|
T Consensus         8 q~~V~~~i~s~~~~eGi~~~el~~~l~~~----~~~~i~~aid~L~~eG~IYsTi----DddHfkst   66 (69)
T d1dpua_           8 QNQVLNLIKACPRPEGLNFQDLKNQLKHM----SVSSIKQAVDFLSNEGHIYSTV----DDDHFKST   66 (69)
T ss_dssp             HHHHHHHHHHCCCTTTEEHHHHHHHSTTS----CHHHHHHHHHHHHHTTSEEECS----STTEEEES
T ss_pred             HHHHHHHHHhCCCccCcCHHHHHHHccCC----CHHHHHHHHHHHHhCCceeccc----ccchhccc
Confidence            34466666654444689999999999 79    9999999999999999998652    46677655

>d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein PG0823
species: Porphyromonas gingivalis [TaxId: 837]

Probab=91.03  E-value=0.064  Score=37.42  Aligned_cols=78  Identities=14%  Similarity=0.164  Sum_probs=59.6

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeeecc-C
Q 035738           12 SFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECSLD-A   89 (333)
Q Consensus        12 ~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~~~-~   89 (333)
                      +.....+++.+-|...+++.         |..    |+....||.+.+ |+    .+..|.+=|+.|...|+|.+... +
T Consensus         9 pv~~~l~ilg~kW~l~Il~~---------L~~----g~~rF~el~~~l~gI----s~~~Ls~rLkeL~~~glv~r~~~~~   71 (102)
T d2fswa1           9 PVRKSMQIFAGKWTLLIIFQ---------INR----RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPE   71 (102)
T ss_dssp             HHHHHHHHHTSSSHHHHHHH---------HTT----SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECS
T ss_pred             CHHHHHHHHcCCCHHHHHHH---------Hcc----CCCCHHHHHhhCccc----chhHHHHHHHHHHHCCceeecccCC
Confidence            56777888888887766554         333    488999999998 89    99999999999999999998641 2


Q ss_pred             CCccccccccccccccc
Q 035738           90 SGARRLYSLNSVSKYYV  106 (333)
Q Consensus        90 ~~~~~~y~~t~~~~~l~  106 (333)
                      .+..-.|++|+.+..+.
T Consensus        72 ~p~~veY~LT~~G~~L~   88 (102)
T d2fswa1          72 VPPRVEYSLTPLGEKVL   88 (102)
T ss_dssp             SSCEEEEEECHHHHTTH
T ss_pred             CCCeehhhhhHhHHHHH
Confidence            22233599998886655

>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator DR1159
species: Deinococcus radiodurans [TaxId: 1299]

Probab=90.88  E-value=0.043  Score=42.23  Aligned_cols=48  Identities=10%  Similarity=0.131  Sum_probs=39.3

Q ss_pred             ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      .+...|...|+..++|..+||+.+++    ++..+.++++-|...|+|++..
T Consensus        66 ~vL~~L~~~~~~~~lt~~eLa~~l~i----~~~tvsr~l~~Le~~GlV~r~~  113 (172)
T d2fbka1          66 DLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERRE  113 (172)
T ss_dssp             HHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC
T ss_pred             HHHHHHHhhCCCCCcCHHHHHHHHCc----CHhHHHHHHHHHHhCCCeeeec
Confidence            34455555554446899999999999    9999999999999999999873

>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Organic hydroperoxide resistance transcriptional regulator OhrR
species: Bacillus subtilis [TaxId: 1423]

Probab=90.35  E-value=0.058  Score=39.68  Aligned_cols=64  Identities=11%  Similarity=0.078  Sum_probs=48.4

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccc---cccccccccccc
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRL---YSLNSVSKYYVP  107 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~---y~~t~~~~~l~~  107 (333)
                      ..++..|...   ++.|..+||+.+++    ++..+.+.++-|...|+|.+.+.  +++.+   ..+|+.+..+..
T Consensus        36 ~~vL~~l~~~---~~~t~~~La~~~~i----~~~~vsr~i~~L~~~glv~r~~~--~~D~R~~~i~lT~~G~~~~~  102 (137)
T d1z91a1          36 YLALLLLWEH---ETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRS--EEDERSVLISLTEDGALLKE  102 (137)
T ss_dssp             HHHHHHHHHH---SEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBC--SSCTTSBEEEECHHHHSGGG
T ss_pred             HHHHHHHHcC---CCCCHHHHHHHHCc----CHHHHHHHHHHHhhccceEEeec--CCCCCeEEEEECHHHHHHHH
Confidence            3345566665   48999999999999    99999999999999999998742  22223   566777765543

>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Pleiotropic regulator of virulence genes, SarA
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.32  E-value=0.079  Score=37.73  Aligned_cols=46  Identities=11%  Similarity=0.154  Sum_probs=37.9

Q ss_pred             hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      ++..|...+ ++++|..+||+.+++    ++..+.+.++.|...|++.+..
T Consensus        38 vL~~l~~~~-~~~~t~~~la~~l~~----~~~tvs~~i~~Le~~gli~r~~   83 (115)
T d2frha1          38 VLTYISENK-EKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKR   83 (115)
T ss_dssp             HHHHHHHTC-CSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBC
T ss_pred             HHHHHHcCC-CCCCCHHHHHHHHCC----CHhHHHHHHHHHHhhhhheeee
Confidence            344454432 257899999999999    9999999999999999999874

>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator SlyA
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.91  E-value=0.094  Score=38.85  Aligned_cols=44  Identities=9%  Similarity=0.064  Sum_probs=37.9

Q ss_pred             hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      +...|.+.   +++|..+||+.+++    ++..+.+.++-|...|++.+.+
T Consensus        34 iL~~i~~~---~~~t~~~la~~l~i----~~~tvs~~l~~L~~~glI~r~~   77 (144)
T d1lj9a_          34 YLVRVCEN---PGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQE   77 (144)
T ss_dssp             HHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHhC---CCCCHHHHHHHHCc----cHhhHHHHHHHHHhhhcccccC
Confidence            34446665   37999999999999    9999999999999999999874

>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator SlyA
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.79  E-value=0.1  Score=38.33  Aligned_cols=65  Identities=14%  Similarity=0.093  Sum_probs=45.3

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccc---cccccccccccc
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARR---LYSLNSVSKYYV  106 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~---~y~~t~~~~~l~  106 (333)
                      +.-+...|...+  ++.|..+||+.+++    +...+.+.++.|...|++.+.+.  +++.   .+.+|+.+..+.
T Consensus        33 ~~~~L~~l~~~~--~~~t~~~la~~l~i----~~~~vs~~l~~L~~~glI~~~~~--~~D~R~~~l~lT~~G~~~~  100 (140)
T d3deua1          33 HWVTLHNIHQLP--PDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTC--ASDRRAKRIKLTEKAEPLI  100 (140)
T ss_dssp             HHHHHHHHHHSC--SSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC----------CEEEECGGGHHHH
T ss_pred             HHHHHHHHHHcC--CCccHHHHHHHHCC----CHhHHHHHHHHHHhCCCEEeccc--CCCCCceeeEECHHHHHHH
Confidence            334555565532  36999999999999    99999999999999999997631  1122   466666665443

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=89.58  E-value=0.28  Score=37.44  Aligned_cols=78  Identities=14%  Similarity=0.087  Sum_probs=54.8

Q ss_pred             CCCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----------------------CCe-EEEccC
Q 035738          188 FDNIKQLVDVGGGI-GVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----------------------PCM-WILHDW  241 (333)
Q Consensus       188 ~~~~~~vlDVGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------------------~gv-~vLh~~  241 (333)
                      ..+..+||-+|||. |..+..+++.....++++.|. +.-++.+++.                       .|+ .++...
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~  104 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG  104 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence            67788899999886 778888888765557899998 6656665542                       012 333333


Q ss_pred             ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          242 NDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       242 ~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      ..+   ..++.+.+.++|+|+++++-.
T Consensus       105 g~~---~~~~~a~~~~~~~G~iv~~G~  128 (174)
T d1jqba2         105 GGS---ETLSQAVKMVKPGGIISNINY  128 (174)
T ss_dssp             SCT---THHHHHHHHEEEEEEEEECCC
T ss_pred             CCH---HHHHHHHHHHhcCCEEEEEee
Confidence            322   467888899999999999764

>d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein EF0647
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.52  E-value=0.11  Score=36.61  Aligned_cols=82  Identities=15%  Similarity=0.099  Sum_probs=61.4

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeeec
Q 035738            9 RDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      +.-+.....+++.+-|...++..         |..    |+....||.+.+ |+    .+..|.+=|+.|...|+|.+..
T Consensus         5 ~~c~i~~al~iig~kW~~~Il~~---------L~~----g~~RF~el~~~l~gI----S~~~Ls~rLk~L~~~glv~R~~   67 (108)
T d1z7ua1           5 KQTSINLALSTINGKWKLSLMDE---------LFQ----GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRES   67 (108)
T ss_dssp             HHHHHHHHHHTTCSTTHHHHHHH---------HHH----SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred             cCCcHHHHHHHHcCCCHHHHHHH---------HHc----CCCCHHHHHHHCcCC----ChhHHHHHHHHHHHCCcceeec
Confidence            44567777788888887766553         444    488999999998 79    9999999999999999999863


Q ss_pred             -cCCCcccccccccccccccc
Q 035738           88 -DASGARRLYSLNSVSKYYVP  107 (333)
Q Consensus        88 -~~~~~~~~y~~t~~~~~l~~  107 (333)
                       ++.+..-.|.+|+.+..+..
T Consensus        68 ~~~~p~~veY~LT~~G~~L~p   88 (108)
T d1z7ua1          68 FNELPPRVEYTLTPEGYALYD   88 (108)
T ss_dssp             ECCSSCEEEEEECHHHHHHHH
T ss_pred             cCCCcceehhhhchhHHHHHH
Confidence             12222234999988876653

>d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Putative transcriptional regulator YtfH
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.42  E-value=0.082  Score=37.65  Aligned_cols=79  Identities=13%  Similarity=0.052  Sum_probs=59.4

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeeecc-C
Q 035738           12 SFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECSLD-A   89 (333)
Q Consensus        12 ~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~~~-~   89 (333)
                      +.....+++.+-|...++..         |..    |+....||.+.+ |+    ++..|.+=|+.|...|+|.+... +
T Consensus        13 pv~~~l~~ig~kW~l~Il~~---------L~~----g~~RF~el~~~l~gi----s~~~Ls~rL~~Le~~glv~R~~~~~   75 (114)
T d1yyva1          13 PSREVLKHVTSRWGVLILVA---------LRD----GTHRFSDLRRKMGGV----SEKMLAQSLQALEQDGFLNRVSYPV   75 (114)
T ss_dssp             THHHHHHHHHSHHHHHHHHH---------GGG----CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECS
T ss_pred             CHHHHHHHHcCCCHHHHHHH---------Hhc----CCCCHHHHHHHcccc----chhHHHHHHHHHHHHHHHhhcccCC
Confidence            45667778888887766543         334    488999999999 79    89999999999999999998742 2


Q ss_pred             CCcccccccccccccccc
Q 035738           90 SGARRLYSLNSVSKYYVP  107 (333)
Q Consensus        90 ~~~~~~y~~t~~~~~l~~  107 (333)
                      .+..-.|.+|+.+..|..
T Consensus        76 ~p~~veY~LT~~G~~L~~   93 (114)
T d1yyva1          76 VPPHVEYSLTPLGEQVSD   93 (114)
T ss_dssp             SSCEEEEEECHHHHHHHH
T ss_pred             CCchhHhHhhHhHHHHHH
Confidence            222345999988876653

>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Probable transcriptional regulator PA4135
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.82  E-value=0.12  Score=37.74  Aligned_cols=47  Identities=13%  Similarity=0.167  Sum_probs=40.4

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      +..++..|...   ++.|..+||+.+++    ++..+.++++-|...|++++..
T Consensus        32 q~~vL~~l~~~---~~~t~~~la~~~~i----~~~~vs~~i~~L~~~gli~r~~   78 (136)
T d2fbia1          32 QWRVIRILRQQ---GEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWK   78 (136)
T ss_dssp             HHHHHHHHHHH---CSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEee
Confidence            34456667766   48999999999999    9999999999999999999874

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.81  E-value=0.29  Score=41.47  Aligned_cols=39  Identities=13%  Similarity=0.157  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhh
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEH  228 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~  228 (333)
                      ...+|||||.|.|.++..|+++...-++++++. +...+.
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~   82 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKF   82 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHH
Confidence            567899999999999999998743347888887 455443

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=88.61  E-value=3.3  Score=35.09  Aligned_cols=73  Identities=12%  Similarity=-0.002  Sum_probs=41.3

Q ss_pred             HHHHHHHHhCCCCcEEEEEeeecCCCCCCccc-cc-----cccchhhHHHhhCCCC---------CcCCHHHHHHHHHhC
Q 035738          248 KLLKNCYKSIPEDGKVIAVELMLPEVPNTSIE-SK-----SNSDSDVLMMIQSPGG---------KERTRHEFMTLATGA  312 (333)
Q Consensus       248 ~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~-~~-----~~~~~d~~m~~~~~~g---------~~rt~~e~~~ll~~a  312 (333)
                      .+|+.=++-|.|||+++++-...++....... ..     ..++.|+........-         -.++.+|+++.+++-
T Consensus       190 ~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~  269 (359)
T d1m6ex_         190 LFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKE  269 (359)
T ss_dssp             HHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCcEEEEEEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccC
Confidence            47877788899999999999887654221100 00     0111122111110000         136899999999887


Q ss_pred             C-CCeeEEe
Q 035738          313 G-FSGISCE  320 (333)
Q Consensus       313 G-f~~~~~~  320 (333)
                      | |++.++.
T Consensus       270 gsF~i~~~e  278 (359)
T d1m6ex_         270 GSFLIDHIE  278 (359)
T ss_dssp             TTBCCEEEE
T ss_pred             CCeeeeeeE
Confidence            6 5555443

>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Protease production regulatory protein Hpr
species: Bacillus subtilis [TaxId: 1423]

Probab=88.07  E-value=0.085  Score=40.12  Aligned_cols=65  Identities=14%  Similarity=-0.044  Sum_probs=46.5

Q ss_pred             hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeecc-CCCccccccccccccccc
Q 035738           35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLD-ASGARRLYSLNSVSKYYV  106 (333)
Q Consensus        35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~-~~~~~~~y~~t~~~~~l~  106 (333)
                      ..++..|...   ++.|..+||+.+++    +...+.++++.|...|++.+... ++...-...+|+.+..+.
T Consensus        44 ~~vL~~l~~~---~~~t~~~la~~~~l----~~~tvs~~i~rL~~~gli~r~~~~~D~R~~~l~lT~~G~~~~  109 (162)
T d2fxaa1          44 HHILWIAYQL---NGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF  109 (162)
T ss_dssp             HHHHHHHHHH---TSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred             HHHHhhhccC---CCcCHHHHHHHHcC----CchhhHHHHHHHHHCCCceeecccccCeeeeeccCHhHHHHH
Confidence            3466677765   48999999999999    99999999999999999998731 111112355566665443

>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarS
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.00  E-value=0.14  Score=37.01  Aligned_cols=49  Identities=14%  Similarity=0.106  Sum_probs=40.2

Q ss_pred             HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      ++-++..|...+ ++++|..|||+.+++    .+..+.+.++.|...|+|.+..
T Consensus        36 q~~iL~~l~~~~-~~~~t~~eia~~~~~----~~~~vs~~l~~L~~~g~v~r~~   84 (125)
T d1p4xa1          36 EFILLTYLFHQQ-ENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVR   84 (125)
T ss_dssp             HHHHHHHHHSCS-CSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEE
T ss_pred             HHHHHHHHHHhc-cCCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCceeec
Confidence            444555665432 258999999999999    9999999999999999999974

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=87.52  E-value=0.19  Score=45.74  Aligned_cols=91  Identities=12%  Similarity=0.086  Sum_probs=56.5

Q ss_pred             hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC----CC--------------CeEEEeec-hhHhhhCCCC-----
Q 035738          177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKY----PY--------------IKGINFDL-PHVIEHVPPH-----  232 (333)
Q Consensus       177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~----p~--------------~~~~~~D~-~~~~~~a~~~-----  232 (333)
                      ++..+++.+. .....+|+|-.||+|.++....+..    ..              ....++|+ +.+...|+-+     
T Consensus       152 Iv~~mv~ll~-~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~  230 (524)
T d2ar0a1         152 LIKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD  230 (524)
T ss_dssp             HHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred             hhHhhhhccc-CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc
Confidence            3444455444 4556799999999999998776542    11              24688888 6655443310     


Q ss_pred             --C------C----------------e-EEEccCC-----------------hhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          233 --P------C----------------M-WILHDWN-----------------DEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       233 --~------g----------------v-~vLh~~~-----------------~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                        .      .                . .|+-+.|                 ...-...++++.+.|+|||++.++-+
T Consensus       231 ~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP  308 (524)
T d2ar0a1         231 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP  308 (524)
T ss_dssp             CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence              0      0                0 2332221                 01113589999999999999888866

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.16  E-value=0.38  Score=36.49  Aligned_cols=83  Identities=17%  Similarity=0.190  Sum_probs=54.8

Q ss_pred             HhhccCCCCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------C------------Ce-E
Q 035738          182 LESYKGFDNIKQLVDVGGGI-GVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------P------------CM-W  236 (333)
Q Consensus       182 ~~~~~~~~~~~~vlDVGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~------------gv-~  236 (333)
                      .+... .++..+||-+|||. |..+..+++.....++++.|. +.-++.+++.          .            ++ .
T Consensus        21 ~~~~~-~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~   99 (174)
T d1f8fa2          21 INALK-VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF   99 (174)
T ss_dssp             HTTTC-CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred             HHhhC-CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcE
Confidence            44344 67788999999874 456667777777667888887 6666665542          0            11 2


Q ss_pred             EEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                      ++.....+   ..++.+.+.++|+|+++++-.
T Consensus       100 vid~~G~~---~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2         100 ALESTGSP---EILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             EEECSCCH---HHHHHHHHTEEEEEEEEECCC
T ss_pred             EEEcCCcH---HHHHHHHhcccCceEEEEEee
Confidence            33222222   578888999999999988754

>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarR
species: Staphylococcus aureus [TaxId: 1280]

Probab=87.00  E-value=0.12  Score=36.78  Aligned_cols=46  Identities=20%  Similarity=0.265  Sum_probs=37.7

Q ss_pred             hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      ++..|.... +++.|..+||+.+++    ++..+.+++..|...|++.+..
T Consensus        37 vL~~l~~~~-~~~~t~~ela~~l~~----~~~~vs~~i~~Le~~gli~r~~   82 (115)
T d1hsja1          37 ILNHILRSE-SNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKR   82 (115)
T ss_dssp             HHHHHHTCS-CSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEE
T ss_pred             HHHHHHccC-CCCcCHHHHHHHHCC----ChhhHHHHHHHHHHcCCeEEEe
Confidence            444554221 158999999999999    9999999999999999999874

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.93  E-value=0.35  Score=41.86  Aligned_cols=77  Identities=14%  Similarity=0.134  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC---------------e------------
Q 035738          190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC---------------M------------  235 (333)
Q Consensus       190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g---------------v------------  235 (333)
                      +..+|||..||+|..+.+.+...+.-+++..|+ +..++.++++      .+               +            
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            467899999999999999888877778999999 8888877643      00               0            


Q ss_pred             ------EE--EccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          236 ------WI--LHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       236 ------~v--Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                            .+  +--+..  +...|..+.++++.||.|.|.-+
T Consensus       125 ~~~~~fDvIDiDPfGs--~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         125 ERHRYFHFIDLDPFGS--PMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             HSTTCEEEEEECCSSC--CHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhcCcCCcccCCCCCC--cHHHHHHHHHHhccCCEEEEEec
Confidence                  11  111222  23689999999999999998876

>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: GntR-like transcriptional regulators
domain: Putative transcriptional regulator RHA1 ro03477
species: Rhodococcus sp. RHA1 [TaxId: 101510]

Probab=86.48  E-value=0.3  Score=31.04  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=33.0

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..++..+||+.+|+    +..-+++-|+.|...|+++..
T Consensus        24 ~~l~~~~La~~~~v----Sr~tvr~Al~~L~~~Gli~~~   58 (69)
T d2hs5a1          24 ARLSEPDICAALDV----SRNTVREAFQILIEDRLVAHE   58 (69)
T ss_dssp             CEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             CccCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEE
Confidence            47789999999999    999999999999999999987

>d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ReutB4095-like
domain: Putative DNA-binding protein ReutB4095
species: Ralstonia eutropha [TaxId: 106590]

Probab=86.31  E-value=0.27  Score=31.51  Aligned_cols=54  Identities=20%  Similarity=0.210  Sum_probs=41.6

Q ss_pred             CCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeecc-CCCcccccccccccccc
Q 035738           46 PGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLD-ASGARRLYSLNSVSKYY  105 (333)
Q Consensus        46 ~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~-~~~~~~~y~~t~~~~~l  105 (333)
                      ++++-|...|+++.++    +-..++|.|-.|.+.|+++..-. +|  .+.=++|+.+..+
T Consensus        21 ~g~~WSLaklsKra~~----PMS~LRR~LTqL~~aGl~~t~~~edG--~G~A~Lt~~G~~l   75 (81)
T d2obpa1          21 GATPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEADG--RGHASLTQEGAAL   75 (81)
T ss_dssp             TCCCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTS--CEEEEECHHHHHH
T ss_pred             CCCCccHHHHHhhcCC----cHHHHHHHHHHHhhcCceeeeeccCC--cceeeccHHHHHH
Confidence            3479999999999999    88999999999999999986532 22  3445566655443

>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: 34L
species: Yaba-like disease virus, YLDV [TaxId: 132475]

Probab=86.24  E-value=0.23  Score=31.42  Aligned_cols=35  Identities=14%  Similarity=0.125  Sum_probs=33.2

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ...|+.+||.++|+    ...-+.|.|..|...|.|.+.
T Consensus        23 ~~~tA~~LAk~Lg~----~Kk~VNr~LY~L~~~G~v~~~   57 (70)
T d1sfua_          23 DYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMV   57 (70)
T ss_dssp             CEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             CCchHHHHHHHhCC----CHHHHHHHHHHHHHCCCeecC
Confidence            68999999999999    889999999999999999987

>d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PH0730 N-terminal domain-like
domain: Hypothetical protein PH0730
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.20  E-value=0.16  Score=32.34  Aligned_cols=48  Identities=19%  Similarity=0.190  Sum_probs=39.7

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738           49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV  106 (333)
Q Consensus        49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~  106 (333)
                      |+.-..||+.+|+    .++.++-.++.|...|+++..      ...-.+|+.+..++
T Consensus        17 PiGRr~La~~L~l----~Er~vRte~~~Lk~~gLI~~~------~~Gm~lTe~G~~~l   64 (69)
T d2p8ta1          17 PLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK------QRGHFLTLKGKEIR   64 (69)
T ss_dssp             CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC--------CEEECHHHHHHH
T ss_pred             CccHHHHHHHcCC----cHHHHHHHHHHHHHCCCeeee------CCCCEECHhHHHHH
Confidence            9999999999999    999999999999999999986      34456666665443

>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: GntR-like transcriptional regulators
domain: Fatty acid responsive transcription factor FadR, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.72  E-value=0.4  Score=30.90  Aligned_cols=35  Identities=14%  Similarity=0.203  Sum_probs=33.0

Q ss_pred             CCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           48 AKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        48 g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ..+ |..+||+.+|+    +..-+++-++.|...|++...
T Consensus        25 ~~LPs~~eLa~~~~v----Sr~tvr~Al~~L~~~G~i~~~   60 (74)
T d1hw1a1          25 TILPAERELSELIGV----TRTTLREVLQRLARDGWLTIQ   60 (74)
T ss_dssp             SBCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             CCCccHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEE
Confidence            577 89999999999    999999999999999999987

>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarS
species: Staphylococcus aureus [TaxId: 1280]

Probab=84.51  E-value=0.21  Score=35.99  Aligned_cols=47  Identities=15%  Similarity=0.051  Sum_probs=38.3

Q ss_pred             ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      -++..|...+ +++.|..+||+.+++    +...+.+.++-|...|++.+..
T Consensus        37 ~vL~~l~~~~-~~~~~~~~ia~~l~~----~~~~vs~~v~~L~~~glV~r~~   83 (125)
T d1p4xa2          37 TILAIITSQN-KNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKER   83 (125)
T ss_dssp             HHHHHHHTTT-TCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEE
T ss_pred             HHHHHHHHcc-CCCccHHHHHHHHCC----CcchHHHHHHHHHhccCEeeee
Confidence            3455564322 147899999999999    9999999999999999999874

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=83.87  E-value=0.7  Score=38.75  Aligned_cols=42  Identities=10%  Similarity=-0.003  Sum_probs=32.1

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhC
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHV  229 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a  229 (333)
                      ...+.+|||+-+|.|.=+..++.... +..++..|. +.-+...
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l  157 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRET  157 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHH
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHH
Confidence            55678999999999998888887654 567888888 5554443

>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Probable transcription regulator BT4300, C-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=83.84  E-value=0.47  Score=30.44  Aligned_cols=34  Identities=21%  Similarity=0.326  Sum_probs=32.1

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      ++|-+|||+-+|+    ....+.|.|..|...|+++..
T Consensus        27 ~lt~~elA~~lg~----sr~tvsr~l~~l~~~g~I~~~   60 (73)
T d1zyba1          27 KVKMDDLARCLDD----TRLNISKTLNELQDNGLIELH   60 (73)
T ss_dssp             ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSCEEE
T ss_pred             ecCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence            5799999999999    999999999999999999975

>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Transcriptional regulator PG0396, C-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=83.82  E-value=0.46  Score=31.00  Aligned_cols=34  Identities=18%  Similarity=0.091  Sum_probs=32.5

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      |.|-+|||..+|+    .+.-+.|.|..|...|++...
T Consensus        29 ~lt~~eLA~~~G~----sretvsr~L~~l~~~glI~~~   62 (81)
T d2gaua1          29 YLSREELATLSNM----TVSNAIRTLSTFVSERMLALD   62 (81)
T ss_dssp             CCCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence            7899999999999    999999999999999999976

>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: GntR-like transcriptional regulators
domain: Transcriptional regulator YydK
species: Bacillus subtilis [TaxId: 1423]

Probab=83.67  E-value=0.62  Score=30.21  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=33.3

Q ss_pred             CCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738           48 AKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL   87 (333)
Q Consensus        48 g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~   87 (333)
                      ..+ |..+||+.+|+    +..-+++-|+.|.+.|++...+
T Consensus        20 ~~LPse~~La~~~~v----Sr~tvr~Al~~L~~~Gli~~~~   56 (78)
T d3bwga1          20 DKLPVLETLMAQFEV----SKSTITKSLELLEQKGAIFQVR   56 (78)
T ss_dssp             CBCCCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEET
T ss_pred             CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEEc
Confidence            467 89999999999    9999999999999999999873

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.59  E-value=0.9  Score=34.18  Aligned_cols=76  Identities=17%  Similarity=0.156  Sum_probs=51.3

Q ss_pred             CCCCCeEEEEcC--CccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CC-------------eEEEccC
Q 035738          188 FDNIKQLVDVGG--GIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PC-------------MWILHDW  241 (333)
Q Consensus       188 ~~~~~~vlDVGg--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~g-------------v~vLh~~  241 (333)
                      +.+..+||-.|+  |.|..+..+++.. ++++++.+. ++-.+.+++.          .+             +.+.-+.
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~  104 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM  104 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred             CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeec
Confidence            677889999995  5777888888776 468877765 5555555432          11             1222222


Q ss_pred             ChhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738          242 NDEHCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       242 ~~~~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      .-.   ..++...+.|+|+|+++.+-
T Consensus       105 ~g~---~~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2         105 LAN---VNLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             CHH---HHHHHHHHHEEEEEEEEECC
T ss_pred             ccH---HHHHHHHhccCCCCEEEEEe
Confidence            222   46888889999999999874

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=83.51  E-value=3.2  Score=31.12  Aligned_cols=79  Identities=16%  Similarity=0.092  Sum_probs=54.3

Q ss_pred             CCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-C-------------------------Ce-EEE
Q 035738          188 FDNIKQLVDVGGG-IGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-P-------------------------CM-WIL  238 (333)
Q Consensus       188 ~~~~~~vlDVGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~-------------------------gv-~vL  238 (333)
                      ...+.+||-+|+| .|.++..+++....-++++.|. +.-++.+++. .                         |+ .++
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi  105 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL  105 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence            6677899999987 4778888888775457899997 6666665543 0                         01 222


Q ss_pred             ccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738          239 HDWNDEHCLKLLKNCYKSIPEDGKVIAVELM  269 (333)
Q Consensus       239 h~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~  269 (333)
                      .....+   ..++.+.+.|+|||+++++-..
T Consensus       106 d~vG~~---~~~~~a~~~l~~~G~iv~~G~~  133 (182)
T d1vj0a2         106 EATGDS---RALLEGSELLRRGGFYSVAGVA  133 (182)
T ss_dssp             ECSSCT---THHHHHHHHEEEEEEEEECCCC
T ss_pred             ecCCch---hHHHHHHHHhcCCCEEEEEeec
Confidence            222222   4678888999999999887653

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=83.36  E-value=1.9  Score=32.43  Aligned_cols=45  Identities=18%  Similarity=0.053  Sum_probs=35.6

Q ss_pred             CCCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738          188 FDNIKQLVDVGGGI-GVTLQAITTKYPYIKGINFDL-PHVIEHVPPH  232 (333)
Q Consensus       188 ~~~~~~vlDVGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~  232 (333)
                      .+...+||-+|+|. |.++..+++.....+++++|. ++-++.|++.
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            67888999999874 566667777777789999998 7778877653

>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Catabolite gene activator protein (CAP), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.95  E-value=0.46  Score=30.03  Aligned_cols=34  Identities=18%  Similarity=0.386  Sum_probs=32.4

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      |+|-+|||.-+|+    ...-+.|.|+.|...|+++..
T Consensus        29 ~lt~~~lA~~~G~----sRetvsr~L~~l~~~glI~~~   62 (69)
T d1i5za1          29 KITRQEIGQIVGC----SRETVGRILKMLEDQNLISAH   62 (69)
T ss_dssp             ECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEc
Confidence            6899999999999    999999999999999999975

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.58  E-value=0.71  Score=34.36  Aligned_cols=77  Identities=13%  Similarity=0.026  Sum_probs=50.1

Q ss_pred             CCCCCeEEEEcCCccH-HHHHHHHHCCCCeEEEeec-hhHhhhCCCC-C--------------------Ce-EEEccCCh
Q 035738          188 FDNIKQLVDVGGGIGV-TLQAITTKYPYIKGINFDL-PHVIEHVPPH-P--------------------CM-WILHDWND  243 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~--------------------gv-~vLh~~~~  243 (333)
                      ..+..+||-.|+|.-. .+..+++. ...++++.|. +.-++.+++. .                    +. .++-+-..
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  103 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVS  103 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCC
T ss_pred             CCCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecCC
Confidence            6677889999987654 44445554 5568888887 6666665543 0                    00 22222221


Q ss_pred             hHHHHHHHHHHHhCCCCcEEEEEee
Q 035738          244 EHCLKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       244 ~~~~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                         ...+....+.|+|+|+++++-.
T Consensus       104 ---~~~~~~a~~~l~~~G~i~~~g~  125 (168)
T d1rjwa2         104 ---KPAFQSAYNSIRRGGACVLVGL  125 (168)
T ss_dssp             ---HHHHHHHHHHEEEEEEEEECCC
T ss_pred             ---HHHHHHHHHHhccCCceEeccc
Confidence               2578899999999999999854

>d1vpta_ c.66.1.25 (A:) Polymerase regulatory subunit VP39 {Vaccinia virus [TaxId: 10245]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: Polymerase regulatory subunit VP39
species: Vaccinia virus [TaxId: 10245]

Probab=82.07  E-value=2  Score=35.04  Aligned_cols=82  Identities=13%  Similarity=0.146  Sum_probs=57.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHHCCC----CeEEEeechhHhhhCCCCCCeEEEccCChhHHHHHHHHHHHhCCCCcEE
Q 035738          188 FDNIKQLVDVGGGIGVTLQAITTKYPY----IKGINFDLPHVIEHVPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDGKV  263 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~----~~~~~~D~~~~~~~a~~~~gv~vLh~~~~~~~~~lL~~~~~~L~pgG~l  263 (333)
                      ...+.+||=||.|.|.+...|.+.+|+    ++.+.+|-..........++|.+...+-++.   .++.+.+.+.++-.|
T Consensus        58 ~~~~~~VVYiGSApG~Hi~~L~~lf~~~~~~ikw~LiDp~~~d~~L~~l~nv~l~~~~~te~---~~~~~k~~~~~~~ii  134 (297)
T d1vpta_          58 ILDGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTRFVDEE---YLRSIKKQLHPSKII  134 (297)
T ss_dssp             CSTTCEEEEESCSSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGTTCTTEEEEECCCCHH---HHHHHHHHHTTSCEE
T ss_pred             CCCCcEEEEeccCCCchHHHHHHHHHhhCCceEEEEECCCccChhhccccceEeehhhcCHH---HHHHHHHhhCcCCeE
Confidence            334679999999999999999998875    5799999733334444456676666666664   455555667778888


Q ss_pred             EEEeeecCC
Q 035738          264 IAVELMLPE  272 (333)
Q Consensus       264 ~i~e~~~~~  272 (333)
                      +|.|....+
T Consensus       135 fISDIRS~~  143 (297)
T d1vpta_         135 LISDVASAA  143 (297)
T ss_dssp             EEECCCC--
T ss_pred             EEEeccccC
Confidence            888875544

>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Cell cycle transcription factor e2f-dp
domain: Cell cycle transcription factor E2F-4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.36  E-value=0.49  Score=29.82  Aligned_cols=37  Identities=16%  Similarity=0.156  Sum_probs=32.7

Q ss_pred             CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738           47 GAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS   86 (333)
Q Consensus        47 ~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~   86 (333)
                      .|..+..+.|+.++++   ..+.+..+.++|.++|++++.
T Consensus        23 ~~~~~L~~aa~~L~v~---~kRRiYDI~NVLe~igli~K~   59 (67)
T d1cf7a_          23 DGVLDLKLAADTLAVR---QKRRIYDITNVLEGIGLIEKK   59 (67)
T ss_dssp             TTEEEHHHHHHHTTTC---CTHHHHHHHHHHHHHTSEEEE
T ss_pred             CCeeeHHHHHHHhcCc---chhhHHHHHHHHhhhhhhhcc
Confidence            3688999999999982   368999999999999999986

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=81.20  E-value=0.96  Score=33.97  Aligned_cols=77  Identities=10%  Similarity=-0.037  Sum_probs=51.2

Q ss_pred             CCCCCeEEEEcCCcc-HHHHHHHHHCCCCeEEEeec-hhHhhhCCCCC----------------------Ce-EEEccCC
Q 035738          188 FDNIKQLVDVGGGIG-VTLQAITTKYPYIKGINFDL-PHVIEHVPPHP----------------------CM-WILHDWN  242 (333)
Q Consensus       188 ~~~~~~vlDVGgG~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~----------------------gv-~vLh~~~  242 (333)
                      ..+..+||-+|+|.. ..+..+++.....++++.|. +.-++.+++.-                      ++ .++-...
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g  109 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVG  109 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecC
Confidence            456788999998754 55566777766678888888 65566655431                      11 2222222


Q ss_pred             hhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738          243 DEHCLKLLKNCYKSIPEDGKVIAVE  267 (333)
Q Consensus       243 ~~~~~~lL~~~~~~L~pgG~l~i~e  267 (333)
                      .+   ..++...+.++|+|+++++-
T Consensus       110 ~~---~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         110 SQ---ATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             CH---HHHHHGGGGEEEEEEEEECC
T ss_pred             cc---hHHHHHHHHHhCCCEEEEEe
Confidence            22   46888889999999999875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=80.17  E-value=1.2  Score=33.25  Aligned_cols=77  Identities=17%  Similarity=0.130  Sum_probs=51.7

Q ss_pred             CCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-C-----------------Ce-EEEccCChhHH
Q 035738          188 FDNIKQLVDVGGG-IGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-P-----------------CM-WILHDWNDEHC  246 (333)
Q Consensus       188 ~~~~~~vlDVGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~-----------------gv-~vLh~~~~~~~  246 (333)
                      ..+..+||-+|+| .|.++..+++.. ..+.++.|. +.-.+.+++. .                 ++ .++.....+  
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~--  104 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAP--  104 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSC--
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecc--
Confidence            7788899999976 477777888876 567777776 5555554432 0                 12 343333322  


Q ss_pred             HHHHHHHHHhCCCCcEEEEEee
Q 035738          247 LKLLKNCYKSIPEDGKVIAVEL  268 (333)
Q Consensus       247 ~~lL~~~~~~L~pgG~l~i~e~  268 (333)
                       ..++...+.++|+|+++++-.
T Consensus       105 -~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2         105 -HNLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             -CCHHHHHTTEEEEEEEEECCC
T ss_pred             -hhHHHHHHHHhcCCEEEEecc
Confidence             357788899999999998854