Citrus Sinensis ID: 035744

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650---

MGNFWIWVLFVFFFLQSSSFGFYLPGSYPHKHVVGDPLSVKVNSITSIDTEMPFSYYSLPFCKPQEGVKDSAENLGELLMGDRIENSPYRFKMFTNETDIFLCKTDPLSKDNFELLKRRIDEMYQVNLILDNLPAIRYTKKDGFLLRWTGFPVGVKYQDAYYVFNHLKFKVLVHKYEEANVARVMGTGDAADVFPTKVNDDVPGYMVVGFEVVPCSVLHNADAVKKSKLYDKYPNPIKCDSNVVSMPIKEGQPIVFTYEVNFDLSDIKWPSRWDAYLKMEGSKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKGWISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSLFVILLLLWFCISVPLTLFGGYLGAKAPHIEYPVRTNQIPREIPAQKYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFLLIVLVLLVVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD

cccHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccHHHHHccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHEEEEEEEccccEEEEEEcccEEEEEccccccccccccEEEEEcEEEEEEEEccccccEEEEcccccccEEccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccEEcccccccccccccHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc

ccHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEcccccccccEEEEcccccccccccccHHHHHHHHcccccccccEEEEEcccccEEEEEEcccccHHHHHHHHHHHHHHccEEEEEccccEEEEEcccccEEEcccccccccccccEEEEcEEEEEEEEEccccccEEEEEEccccEEEEEEccccccccEEEEEEEEEEcEEEcccccccccccccccccccccccccccccccccEEEEEEEEEEEEccccccHHHHHHHHccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccEEEEcccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccEEEHHHHHcccccccccccccccccccccccccccHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc

MGNFWIWVLFVFFFLqsssfgfylpgsyphkhvvgdplsvKVNSitsidtempfsyyslpfckpqegvkDSAENLGELlmgdrienspyrfkmftnetdiflcktdplskDNFELLKRRIDEMYQVNLildnlpairytkkdgfllrwtgfpvgvkyQDAYYVFNHLKFKVLVHKYEEANVarvmgtgdaadvfptkvnddvpgymVVGFEVvpcsvlhnadavkksklydkypnpikcdsnvvsmpikegqpivFTYEvnfdlsdikwpsrWDAYLKMEGSKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVvgdvfrapnnaGLLCIMVGNGVQILGMAVVTIFFAALgfmspasrgtliTGMLFIYMILGVAAGYVAVRLWRTigcgdlkgWISVAWKAACFFPGIAFLILTTLNFllwgshstgaiPFSLFVILLLLWFCISvpltlfggylgakaphieypvrtnqipreipaqkypsWLLVlgagtlpfgTLFIELFFIMSSIWMGRVYYVFGFLLIVLVLLVVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDlrnlsgpvsatLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD

MGNFWIWVLFVFFFLQSSSFGFYLPGSYPHKHVVGDPLSVKVNSITSIDTEMPFSYYSLPFCKPQEGVKDSAENLGELLMGDRIENSPYRFKMFTNETDIFLCKTDPLSKDNFELLKRRIDEMYQVNLILDNLPAIRYTKKDGFLLRWTGFPVGVKYQDAYYVFNHLKFKVLVHKYEEANVARVMGTGDAADVFPTKVNDDVPGYMVVGFEVVPCSVLHNADAvkksklydkypnpiKCDSNVVSMPIKEGQPIVFTYEVNFDLSDIKWPSRWDAYLKMEGSKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKGWISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSLFVILLLLWFCISVPLTLFGGYLGAKAPHIEYPVRTNQIPREIPAQKYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFLLIVLVLLVVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD

MGNfwiwvlfvffflqsssfgfylPGSYPHKHVVGDPLSVKVNSITSIDTEMPFSYYSLPFCKPQEGVKDSAENLGELLMGDRIENSPYRFKMFTNETDIFLCKTDPLSKDNFELLKRRIDEMYQVNLILDNLPAIRYTKKDGFLLRWTGFPVGVKYQDAYYVFNHLKFKVLVHKYEEANVARVMGTGDAADVFPTKVNDDVPGYMVVGFEVVPCSVLHNADAVKKSKLYDKYPNPIKCDSNVVSMPIKEGQPIVFTYEVNFDLSDIKWPSRWDAYLKMEGSKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKGWISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSLFVILLLLWFCISVPLTLFGGYLGAKAPHIEYPVRTNQIPREIPAQKYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFllivlvllvvvcaevslvlTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD

**NFWIWVLFVFFFLQSSSFGFYLPGSYPHKHVVGDPLSVKVNSITSIDTEMPFSYYSLPFCKPQEGV****ENLGELLMGDRIENSPYRFKMFTNETDIFLCKTDPLSKDNFELLKRRIDEMYQVNLILDNLPAIRYTKKDGFLLRWTGFPVGVKYQDAYYVFNHLKFKVLVHKYEEANVARVMGTGDAADVFPTKVNDDVPGYMVVGFEVVPCSVLHNADAVKKSKLYDKYPNPIKCDSNVVSMPIKEGQPIVFTYEVNFDLSDIKWPSRWDAYLKMEGSKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELD*******NEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKGWISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSLFVILLLLWFCISVPLTLFGGYLGAKAPHIEYPVRTNQIPREIPAQKYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFLLIVLVLLVVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSS****

**NFWIWVLFVFFFLQSSSFGFYLPGSYPHKHVVGDPLSVKVNSITSIDTEMPFSYYSLPFCKP************ELLMGDRIENSPYRFKMFTNETDIFLCKTDPLSKDNFELLKRRIDEMYQVNLILDNLPAIRYTKKDGFLLRWTGFPVGVKYQDAYYVFNHLKFKVLVHKYEEANVARVMGTGDAADVFPTKVNDDVPGYMVVGFEVVPCSVLHNADAVKKSKLYDKYPNPIK********PIKEGQPIVFTYEVNFDLSDIKWPSRWDAYLKMEGSKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELD*******NEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKGWISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSLFVILLLLWFCISVPLTLFGGYLGAKAPHIEYPVRTNQIPREIPAQKYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFLLIVLVLLVVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD

*GNFWIWVLFVFFFLQSSSFGFYLPGSYPHKHVVGDPLSVKVNSITSIDTEMPFSYYSLPFCKPQEGVKDSAENLGELLMGDRIENSPYRFKMFTNETDIFLCKTDPLSKDNFELLKRRIDEMYQVNLILDNLPAIRYTKKDGFLLRWTGFPVGVKYQDAYYVFNHLKFKVLVHKYEEANVARVMGTGDAADVFPTKVNDDVPGYMVVGFEVVPCSVLHNAD**KKSKLYDKYPNPIKCDSNVVSMPIKEGQPIVFTYEVNFDLSDIKWPSRWDAYLKMEGSKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKGWISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSLFVILLLLWFCISVPLTLFGGYLGAKAPHIEYPVRTNQIPREIPAQKYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFLLIVLVLLVVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD

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SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MGNFWIWVLFVFFFLQSSSFGFYLPGSYPHKHVVGDPLSVKVNSITSIDTEMPFSYYSLPFCKPQEGVKDSAENLGELLMGDRIENSPYRFKMFTNETDIFLCKTDPLSKDNFELLKRRIDEMYQVNLILDNLPAIRYTKKDGFLLRWTGFPVGVKYQDAYYVFNHLKFKVLVHKYEEANVARVMGTGDAADVFPTKVNDDVPGYMVVGFEVVPCSVLHNADAVKKSKLYDKYPNPIKCDSNVVSMPIKEGQPIVFTYEVNFDLSDIKWPSRWDAYLKMEGSKVHWFSILNSLMVITFLAGIVLVIFxxxxxxxxxxxxxxxxxxxxxMNEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKGWISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSLFVILLLLWFCISVPLTLFGGYLGAKAPHIEYPVRTNQIPREIPAQKYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFLLIVLVLLVVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		653	2.2.26 [Sep-21-2011]
Q92544		642	Transmembrane 9 superfami	yes	no	0.938	0.954	0.404	1e-131
Q5RDY2		642	Transmembrane 9 superfami	yes	no	0.938	0.954	0.404	1e-131
A5D7E2		642	Transmembrane 9 superfami	yes	no	0.934	0.950	0.407	1e-130
Q4KLL4		643	Transmembrane 9 superfami	yes	no	0.914	0.928	0.401	1e-129
Q8BH24		643	Transmembrane 9 superfami	yes	no	0.909	0.923	0.402	1e-129
Q99805		663	Transmembrane 9 superfami	no	no	0.911	0.897	0.387	1e-125
Q5R8Y6		663	Transmembrane 9 superfami	no	no	0.911	0.897	0.387	1e-125
Q55FP0		641	Putative phagocytic recep	yes	no	0.943	0.960	0.380	1e-125
P58021		662	Transmembrane 9 superfami	no	no	0.908	0.895	0.383	1e-124
Q66HG5		663	Transmembrane 9 superfami	no	no	0.908	0.894	0.382	1e-124

>sp\|Q92544\|TM9S4_HUMAN Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2	Back alignment and function desciption

 Score =  469 bits (1207), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 270/667 (40%), Positives = 393/667 (58%), Gaps = 54/667 (8%)

Query: 7   WVLFVFFFLQSSSFGFYLPGSYPHKHVVGDPLSVKVNSITSIDTEMPFSYYSLPFCKPQE 66
           W L +F  +  +S  FY+PG  P      DP+ +K   +TS  T++P+ YYSLPFC+P +
Sbjct: 10  WSLLLFSLMCETS-AFYVPGVAPINFHQNDPVEIKAVKLTSSRTQLPYEYYSLPFCQPSK 68

Query: 67  GVKDSAENLGELLMGDRIENSPYRFKMFTNETDIFLC----KTDPLSKDNFELLKRRIDE 122
            +   AENLGE+L GDRI N+P++  M + +    LC    K   L+ +   L+  RI E
Sbjct: 69  -ITYKAENLGEVLRGDRIVNTPFQVLMNSEKKCEVLCSQSNKPVTLTVEQSRLVAERITE 127

Query: 123 MYQVNLILDNLP-AIR---YTKKDGFLLRWT-------GFPVGVKYQDAYYVFNHLKFKV 171
            Y V+LI DNLP A R   Y+ +D    +         G+ +G    +  Y+ NHL F +
Sbjct: 128 DYYVHLIADNLPVATRLELYSNRDSDDKKKEKDVQFEHGYRLGFTDVNKIYLHNHLSFIL 187

Query: 172 LVHKYEEANVARVMGTGDAADVFPTKVNDDVPGYMVVGFEVVPCSV-LHNADAVKKSKLY 230
             H+ +                      D    Y VV FEV+P S+ L +  A +KS   
Sbjct: 188 YYHREDMEE-------------------DQEHTYRVVRFEVIPQSIRLEDLKADEKSSC- 227

Query: 231 DKYPNPIKCDSNVVSMPIKEGQPIVFTYEVNFDLSDIKWPSRWDAYLKMEGSKVHWFSIL 290
              P         +  P KE Q + FTY V+++ SDIKW SRWD YL M   ++HWFSI+
Sbjct: 228 -TLPEGTNSSPQEID-PTKENQ-LYFTYSVHWEESDIKWASRWDTYLTMSDVQIHWFSII 284

Query: 291 NSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPNNA 350
           NS++V+ FL+GI+ +I +RT+R+D+  Y   +KE   +   E SGWKLV GDVFR P   
Sbjct: 285 NSVVVVFFLSGILSMIIIRTLRKDIANY---NKEDDIEDTMEESGWKLVHGDVFRPPQYP 341

Query: 351 GLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLW 410
            +L  ++G+G+Q+  M ++ IF A LG +SP+SRG L+T   F++M +GV  G+ A RL+
Sbjct: 342 MILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLY 401

Query: 411 RTIGCGDLKG--WISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSLFVILLLLW 468
           RT     LKG  W   A+  A  +PG+ F I   LN  +WG HS+GA+PF   V LL +W
Sbjct: 402 RT-----LKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMW 456

Query: 469 FCISVPLTLFGGYLGAKAPHIEYPVRTNQIPREIPAQKY--PSWLLVLGAGTLPFGTLFI 526
           F IS+PL   G Y G +    + PVRTNQIPR+IP Q++    ++ +L AG LPFG +FI
Sbjct: 457 FGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFI 516

Query: 527 ELFFIMSSIWMGRVYYVFGFLLIVLVLLVVVCAEVSLVLTYMHLCVEDWKWWWKSFFASG 586
           ELFFI S+IW  + YY+FGFL +V ++LVV C+++S+V+ Y  LC ED++WWW++F  SG
Sbjct: 517 ELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSG 576

Query: 587 SVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYL 646
             A Y+ +Y+I Y V  L ++   + + LY GY+  MVL+  L TGT+GF +++ FV  +
Sbjct: 577 GSAFYVLVYAIFYFVNKL-DIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKI 635

Query: 647 FSSVKLD 653
           +++VK+D
Sbjct: 636 YAAVKID 642

Homo sapiens (taxid: 9606)

>sp\|Q5RDY2\|TM9S4_PONAB Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1	Back alignment and function description

>sp\|A5D7E2\|TM9S4_BOVIN Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2	Back alignment and function description

>sp\|Q4KLL4\|TM9S4_RAT Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1	Back alignment and function description

>sp\|Q8BH24\|TM9S4_MOUSE Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1	Back alignment and function description

>sp\|Q99805\|TM9S2_HUMAN Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1	Back alignment and function description

>sp\|Q5R8Y6\|TM9S2_PONAB Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1	Back alignment and function description

>sp\|Q55FP0\|PHG1A_DICDI Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1	Back alignment and function description

>sp\|P58021\|TM9S2_MOUSE Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1	Back alignment and function description

>sp\|Q66HG5\|TM9S2_RAT Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		653
255565099		657	Endosomal P24A protein precursor, putati	0.993	0.987	0.872	0.0
449493667		662	PREDICTED: transmembrane 9 superfamily m	0.998	0.984	0.858	0.0
147804721		656	hypothetical protein VITISV_031212 [Viti	0.995	0.990	0.866	0.0
225463008		656	PREDICTED: transmembrane 9 superfamily m	0.995	0.990	0.866	0.0
334188011		658	endomembrane family protein 70 [Arabidop	0.998	0.990	0.864	0.0
356548465		658	PREDICTED: transmembrane 9 superfamily m	0.996	0.989	0.849	0.0
356562892		664	PREDICTED: transmembrane 9 superfamily m	0.996	0.980	0.845	0.0
449457933		657	PREDICTED: transmembrane 9 superfamily m	0.996	0.990	0.854	0.0
356556592		660	PREDICTED: transmembrane 9 superfamily m	0.996	0.986	0.820	0.0
356530629		660	PREDICTED: transmembrane 9 superfamily m	0.998	0.987	0.815	0.0

>gi\|255565099\|ref\|XP_002523542.1\| Endosomal P24A protein precursor, putative [Ricinus communis] gi\|223537249\|gb\|EEF38881.1\| Endosomal P24A protein precursor, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1174 bits (3038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/652 (87%), Positives = 605/652 (92%), Gaps = 3/652 (0%)

Query: 4   FWIWVLFVFFFLQSSSFGFYLPGSYPHKHVVGDPLSVKVNSITSIDTEMPFSYYSLPFCK 63
           F IWVL +F   QS  +GFYLPGSYPHK+ VG+ LSVKVNSITSIDTEMPFSYYSLPFCK
Sbjct: 7   FKIWVLTIFLIFQSG-YGFYLPGSYPHKYNVGETLSVKVNSITSIDTEMPFSYYSLPFCK 65

Query: 64  PQEGVKDSAENLGELLMGDRIENSPYRFKMFTNETDIFLCKTDPLSKDNFELLKRRIDEM 123
           P EGVKDSAENLGELLMGDRIENSPYRF+M  NE+++FLCKTDPLS D+F+LLK+RIDEM
Sbjct: 66  PAEGVKDSAENLGELLMGDRIENSPYRFRMHVNESEVFLCKTDPLSADSFKLLKKRIDEM 125

Query: 124 YQVNLILDNLPAIRYTKKDGFLLRWTGFPVGVKYQDAYYVFNHLKFKVLVHKYEEANVAR 183
           YQVNLILDNLPAIRYTKK+ +LLRWTGFPVG+K QDAYYVFNHL+F VLVHKYEEANVAR
Sbjct: 126 YQVNLILDNLPAIRYTKKESYLLRWTGFPVGIKVQDAYYVFNHLRFTVLVHKYEEANVAR 185

Query: 184 VMGTGDAADVFPTKVN--DDVPGYMVVGFEVVPCSVLHNADAVKKSKLYDKYPNPIKCDS 241
           VMGTGD A+V PT  N   D+PGYMVVGFEVVPC+V+HN  +VK +K+Y+KYP  IKCD 
Sbjct: 186 VMGTGDGAEVIPTIGNGGSDIPGYMVVGFEVVPCNVMHNVQSVKNTKMYEKYPAQIKCDP 245

Query: 242 NVVSMPIKEGQPIVFTYEVNFDLSDIKWPSRWDAYLKMEGSKVHWFSILNSLMVITFLAG 301
             VSMPIKE +PIVFTYEVNF+ SDIKWPSRWDAYLKMEGSKVHWFSI+NSLMVITFLAG
Sbjct: 246 TTVSMPIKENEPIVFTYEVNFEESDIKWPSRWDAYLKMEGSKVHWFSIMNSLMVITFLAG 305

Query: 302 IVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPNNAGLLCIMVGNGV 361
           IVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAP N  LLC+MVG+GV
Sbjct: 306 IVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPANPSLLCVMVGDGV 365

Query: 362 QILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKGW 421
           QILGMA+VTI FAALGFMSPASRGTLITGML  YMILG+AAGYVAVRLWRTIGCGD KGW
Sbjct: 366 QILGMAIVTIMFAALGFMSPASRGTLITGMLIFYMILGIAAGYVAVRLWRTIGCGDHKGW 425

Query: 422 ISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSLFVILLLLWFCISVPLTLFGGY 481
           +SV+WKAACFFPGIAFLILT LNFLLWGS STGAIPFSLFVIL+LLWFCISVPLTL GGY
Sbjct: 426 VSVSWKAACFFPGIAFLILTILNFLLWGSQSTGAIPFSLFVILILLWFCISVPLTLIGGY 485

Query: 482 LGAKAPHIEYPVRTNQIPREIPAQKYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVY 541
            GAKAPHIEYPVRTNQIPREIPAQKYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVY
Sbjct: 486 FGAKAPHIEYPVRTNQIPREIPAQKYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVY 545

Query: 542 YVFGFLLIVLVLLVVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLV 601
           YVFGFLLIV +LLVVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLV
Sbjct: 546 YVFGFLLIVFILLVVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLV 605

Query: 602 FDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD 653
           FDL++LSGPVSATLYLGYSL MVLAIM ATGTVGFLSSFWFVHYLFSSVKLD
Sbjct: 606 FDLKSLSGPVSATLYLGYSLLMVLAIMFATGTVGFLSSFWFVHYLFSSVKLD 657

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449493667\|ref\|XP_004159402.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|147804721\|emb\|CAN62778.1\| hypothetical protein VITISV_031212 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225463008\|ref\|XP_002264906.1\| PREDICTED: transmembrane 9 superfamily member 4 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|334188011\|ref\|NP_001190420.1\| endomembrane family protein 70 [Arabidopsis thaliana] gi\|10176814\|dbj\|BAB10022.1\| endosomal protein-like [Arabidopsis thaliana] gi\|332006552\|gb\|AED93935.1\| endomembrane family protein 70 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356548465\|ref\|XP_003542622.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max]	Back alignment and taxonomy information

>gi\|356562892\|ref\|XP_003549702.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max]	Back alignment and taxonomy information

>gi\|449457933\|ref\|XP_004146702.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Cucumis sativus] gi\|449505381\|ref\|XP_004162451.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356556592\|ref\|XP_003546608.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max]	Back alignment and taxonomy information

>gi\|356530629\|ref\|XP_003533883.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		653
TAIR\|locus:2135620		652	AT4G12650 [Arabidopsis thalian	0.957	0.958	0.666	1.4e-231
TAIR\|locus:2183710		648	EMP1 "endomembrane protein 1"	0.921	0.929	0.431	1e-132
TAIR\|locus:2091561		641	TMN7 "transmembrane nine 7" [A	0.921	0.939	0.431	1.5e-131
TAIR\|locus:2047565		637	AT2G24170 [Arabidopsis thalian	0.921	0.945	0.423	6.4e-131
TAIR\|locus:2205682		637	TMN6 "transmembrane nine 6" [A	0.918	0.941	0.421	4.6e-128
FB\|FBgn0028541		630	TM9SF4 [Drosophila melanogaste	0.666	0.690	0.438	5.2e-119
WB\|WBGene00014119		656	ZK858.6 [Caenorhabditis elegan	0.681	0.678	0.408	4.2e-117
UNIPROTKB\|F1NVX7		642	TM9SF4 "Uncharacterized protei	0.912	0.928	0.399	2.7e-116
UNIPROTKB\|A5D7E2		642	TM9SF4 "Transmembrane 9 superf	0.912	0.928	0.399	4.4e-116
UNIPROTKB\|F1PWE3		642	TM9SF4 "Uncharacterized protei	0.912	0.928	0.397	4.4e-116

TAIR\|locus:2135620 AT4G12650 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2234 (791.5 bits), Expect = 1.4e-231, P = 1.4e-231
 Identities = 422/633 (66%), Positives = 505/633 (79%)

Query:    25 PGSYPHKHVVGDPLSVKVNSITSIDTEMPFSYYSLPFCKPQEGVKDSAENLGELLMGDRI 84
             PGSY H +  GD +  KVNS+TSI+TE+PFSYYSLP+C+P EG+K SAENLGELLMGD+I
Sbjct:    24 PGSYMHTYSDGDSIFAKVNSLTSIETELPFSYYSLPYCQPLEGIKKSAENLGELLMGDQI 83

Query:    85 ENSPYRFKMFTNETDIFLCKTDPLSKDNFELLKRRIDEMYQVNLILDNLPAIRYTKKDGF 144
             +NS YRF+M TNE+ ++LC T PL++   +LLK+R  E+YQVN+ILDNLPA+R+ K++G 
Sbjct:    84 DNSAYRFRMRTNES-LYLCTTSPLNEHEVKLLKQRTRELYQVNMILDNLPALRFAKQNGV 142

Query:   145 LLRWTGFPVGVKYQDAY--YVFNHLKFKVLVHKYEEANVARVMGTGDAA-DVFPTKVNDD 201
              ++WTG+PVG    ++   Y+ NHLKFKVLVH+YE  NV  V+GTG+    V        
Sbjct:   143 TIQWTGYPVGYSPPNSNDDYIINHLKFKVLVHEYE-GNVMEVIGTGEEGMGVISEADKKK 201

Query:   202 VPGYMVVGFEVVPCSVLHNADAVKKSKLYDKYPNPIKCDSNV-VSMPIKEGQPIVFTYEV 260
               GY +VGFEVVPCSV ++A+ + K  +YD  P+ + C   +  +  IKE + I FTYEV
Sbjct:   202 ALGYEIVGFEVVPCSVKYDAEKMTKLHMYDPVPS-VNCPLELDKAQIIKEHERITFTYEV 260

Query:   261 NFDLSDIKWPSRWDAYLKMEGSKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEE 320
              F  S+ +WPSRWDAYLKMEG++VHWFSILNSLMVI FLAGIV VIFLRTVRRDLT+YEE
Sbjct:   261 EFVKSETRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTKYEE 320

Query:   321 LDKEAQAQMNEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMS 380
             LDKEAQAQMNEELSGWKLVVGDVFR P  + LLCIMVG+GV+I GMAVVTI FAALGFMS
Sbjct:   321 LDKEAQAQMNEELSGWKLVVGDVFREPEMSKLLCIMVGDGVRITGMAVVTIVFAALGFMS 380

Query:   381 PASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKGWISVAWKAACFFPGIAFLIL 440
             PASRG L+TGM+ +Y+ LG+ AGY  VRLWRT+  G  +GW S++W  ACFFPGIAF+IL
Sbjct:   381 PASRGMLLTGMIILYLFLGIVAGYAGVRLWRTVK-GTSEGWRSLSWSIACFFPGIAFVIL 439

Query:   441 TTLNFLLWGSHSTGAIPFSLFVILLLLWFCISVPLTLFGGYLGAKAPHIEYPVRTNQIPR 500
             T LNFLLW S+STGAIP SL+  LL LWFCISVPLTLFGG+LG +A  I++PVRTNQIPR
Sbjct:   440 TVLNFLLWSSNSTGAIPISLYFELLALWFCISVPLTLFGGFLGTRAEAIQFPVRTNQIPR 499

Query:   501 EIPAQKYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFXXXXXXXXXXXXXX 560
             EIP +KYPSWLLVLGAGTLPFGTLFIELFFI SSIW+GR YYVFGF              
Sbjct:   500 EIPERKYPSWLLVLGAGTLPFGTLFIELFFIFSSIWLGRFYYVFGFLLIVLLLLVVVCAE 559

Query:   561 XXXXXTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYS 620
                  TYMHLCVEDW+WWWK+F+ASGSVA+Y+F YSINYLVFDL++LSGPVSA LY+GYS
Sbjct:   560 VSVVLTYMHLCVEDWRWWWKAFYASGSVALYVFAYSINYLVFDLQSLSGPVSAMLYIGYS 619

Query:   621 LFMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD 653
             L M +AIMLATGT+GFL+SF+FVHYLFSSVK+D
Sbjct:   620 LLMAIAIMLATGTIGFLTSFYFVHYLFSSVKID 652

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR\|locus:2183710 EMP1 "endomembrane protein 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2091561 TMN7 "transmembrane nine 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2047565 AT2G24170 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2205682 TMN6 "transmembrane nine 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

FB\|FBgn0028541 TM9SF4 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

WB\|WBGene00014119 ZK858.6 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NVX7 TM9SF4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|A5D7E2 TM9SF4 "Transmembrane 9 superfamily member 4" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PWE3 TM9SF4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BH24	TM9S4_MOUSE	No assigned EC number	0.4027	0.9096	0.9237	yes	no
Q5RDY2	TM9S4_PONAB	No assigned EC number	0.4047	0.9387	0.9548	yes	no
Q4KLL4	TM9S4_RAT	No assigned EC number	0.4015	0.9142	0.9284	yes	no
A5D7E2	TM9S4_BOVIN	No assigned EC number	0.4072	0.9341	0.9501	yes	no
Q55FP0	PHG1A_DICDI	No assigned EC number	0.3800	0.9433	0.9609	yes	no
Q92544	TM9S4_HUMAN	No assigned EC number	0.4047	0.9387	0.9548	yes	no
Q9Y819	YON8_SCHPO	No assigned EC number	0.3161	0.9050	0.9395	yes	no
P32802	TMN1_YEAST	No assigned EC number	0.3285	0.9280	0.9085	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00005630001	SubName- Full=Chromosome undetermined scaffold_155, whole genome shotgun sequence; (656 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		653
pfam02990		518	pfam02990, EMP70, Endomembrane protein 70	0.0

>gnl\|CDD\|217309 pfam02990, EMP70, Endomembrane protein 70	Back alignment and domain information

 Score =  585 bits (1509), Expect = 0.0
 Identities = 253/569 (44%), Positives = 340/569 (59%), Gaps = 60/569 (10%)

Query: 52  MPFSYYSLPFCKPQEGVKDSAENLGELLMGDRIENSPYRFKMFTNETDIFLCKTDPLSKD 111
            P+ YYSLPFC+P E +K  +E+LGE+L GDRI NSPY+ K    +    LC    L+ +
Sbjct: 1   EPYEYYSLPFCRP-EKIKHKSESLGEVLFGDRIYNSPYKLKFLEEKECEVLCAV-KLTSE 58

Query: 112 NFELLKRRIDEMYQVNLILDNLPAIRY-----TKKDGFLLRWTGFPVGVKYQDAYYVFNH 166
           + +  ++ I+E Y V  ++DNLP   +      K  GF     GFP+G + ++ YY+FNH
Sbjct: 59  DVKFFRKAIEEGYYVQWLIDNLPVAGFVGKVDNKGVGFES---GFPLGFQTEEKYYLFNH 115

Query: 167 LKFKVLVHKYEEANVARVMGTGDAADVFPTKVNDDVPGYMVVGFEVVPCSVLHNADAVKK 226
           L F +  H                      + NDD   Y +VG EV P SV         
Sbjct: 116 LDFVIEYH---------------------DRDNDD---YRIVGIEVTPRSVKP------S 145

Query: 227 SKLYDKYPNPIKCDSNVVSMPIKEGQPIVFTYEVNFDLSDIKWPSRWDAYLK-MEGSKVH 285
                  P  +                + FTY V +  SD+KW SRWD YL  M   ++H
Sbjct: 146 GCSTTSSPQELDEGKENE---------LTFTYSVKWKESDVKWASRWDKYLDAMHDLQIH 196

Query: 286 WFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFR 345
           WFSI+NSL+++ FL+GIV +I +RT+RRD+ RY ELD++  AQ   E SGWKLV GDVFR
Sbjct: 197 WFSIINSLVIVLFLSGIVSMILMRTLRRDIARYNELDEDEDAQ---EESGWKLVHGDVFR 253

Query: 346 APNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYV 405
            P N  LL  +VG+GVQ+L M + TI FA LGF+SP++RG+L+T  + +Y + G  AGYV
Sbjct: 254 PPRNPMLLSALVGSGVQLLLMVIGTIVFACLGFLSPSNRGSLLTAAIVLYALTGFVAGYV 313

Query: 406 AVRLWRTIGCGDLKGWISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSLFVILL 465
           + RL++T      K W       A  FPGI F+I   LNF+LW   S+GAIPF   V LL
Sbjct: 314 SARLYKTFKG---KKWKRNLILTAFLFPGIVFVIFFVLNFVLWAYGSSGAIPFGTIVALL 370

Query: 466 LLWFCISVPLTLFGGYLGAKAPHI-EYPVRTNQIPREIPAQK--YPSWLLVLGAGTLPFG 522
           LLWF +SVPLT  GG +G +     ++PVRTNQIPR+IP Q         +L  G LPFG
Sbjct: 371 LLWFLVSVPLTFLGGIVGFRNRAGEQHPVRTNQIPRQIPEQPWYLSPLPGILMGGILPFG 430

Query: 523 TLFIELFFIMSSIWMGRVYYVFGFLLIVLVLLVVVCAEVSLVLTYMHLCVEDWKWWWKSF 582
            +FIELFFI +S+W+ ++YY+FGFL +V ++LVVVC+EV++VLTY  LC ED++WWW+SF
Sbjct: 431 AIFIELFFIFTSLWLHKIYYMFGFLFLVFIILVVVCSEVTIVLTYFQLCAEDYRWWWRSF 490

Query: 583 FASGSVAIYIFLYSINYLVFDLRNLSGPV 611
             SGS A+Y+FLYSI Y    L  +SG V
Sbjct: 491 LTSGSTAVYVFLYSIYYFFTKL-KISGFV 518

Length = 518

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		653
KOG1278		628	consensus Endosomal membrane proteins, EMP70 [Intr	100.0
KOG1277		593	consensus Endosomal membrane proteins, EMP70 [Intr	100.0
PF02990		521	EMP70: Endomembrane protein 70; InterPro: IPR00424	100.0
PF12670		116	DUF3792: Protein of unknown function (DUF3792); In	87.77

>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=4e-199  Score=1589.33  Aligned_cols=607  Identities=54%  Similarity=1.006  Sum_probs=575.6

Q ss_pred             HHHHHHHHHhhcccceeeecCCCCCCCCCCCCcEEEEEeecccCCCCcccccccCCCCCCCCCccCccCCccchhcCCcc
Q 035744            5 WIWVLFVFFFLQSSSFGFYLPGSYPHKHVVGDPLSVKVNSITSIDTEMPFSYYSLPFCKPQEGVKDSAENLGELLMGDRI   84 (653)
Q Consensus         5 ~~~~~~~~~~~~~~~~~f~~pg~~p~~Y~~Gd~V~v~vNkl~s~~~~~~Y~Yy~lpfC~p~~~~~~~~~slGevL~Gdr~   84 (653)
                      ++++++.++.  +.+.|||+||++|.+|++||+++++|||++|.++|.||+||++|||+|+ ++++++|||||+|+|||+
T Consensus        12 ~~~ll~~~~~--~~~~~FylpG~aPv~f~~gd~i~l~vnklts~~t~lpY~YY~~~Fc~p~-~i~~~~EnLGeVl~GDRi   88 (628)
T KOG1278|consen   12 LALLLVSLLL--STSSAFYLPGVAPVNFCSGDPIELKVNKLTSSRTQLPYEYYSLPFCRPE-KIKKQSENLGEVLRGDRI   88 (628)
T ss_pred             HHHHHHHHHH--hcccceecCCcCCccCCCCCceEEEEEEeeccccccCcccccccccCcc-ccCCcccchhceeccCcc
Confidence            4555555553  3378999999999999999999999999999999999999999999999 599999999999999999


Q ss_pred             ccCCeEEEeccccccc-cccccCCCCHHHHHHHHHHHHhcceEEEEEeccceEEEe--ccCCeeeeeccccccee---cc
Q 035744           85 ENSPYRFKMFTNETDI-FLCKTDPLSKDNFELLKRRIDEMYQVNLILDNLPAIRYT--KKDGFLLRWTGFPVGVK---YQ  158 (653)
Q Consensus        85 ~~S~y~i~f~~~~~~c-~lC~~~~~t~~~~~~l~~~I~~~Y~~~~~iD~LPv~~~~--~~~~~~~y~~GfplG~~---~~  158 (653)
                      +||||+++|++|++ | .+|+. ++++|+.+.++|+|+++|++||++||||++...  .++++.+|.+|||+|++   +.
T Consensus        89 ~nSPy~~~m~e~~~-C~~lC~~-k~~~~~~~~l~~~I~~~Y~v~wivDnlPva~~~~~~~~~~~~y~~GfplG~~~~~~~  166 (628)
T KOG1278|consen   89 ENSPYKFKMLENQP-CETLCAT-KLDKEDAKLLKKLIREGYVVNWIVDNLPVATRYERSDDGKVYYGTGFPLGFKGPKDE  166 (628)
T ss_pred             cCCCceEecccCCc-chhhhcc-cCCHHHHHHHHHHHhhccEeeeeecCCceeEEEeecCCCceEeccCccceeccCCCc
Confidence            99999999999999 9 99998 899999999999999999999999999988643  24588899999999998   56


Q ss_pred             ceeEEeeeEEEEEEEecccccchhhhcccCCCcccccCccCCCCCCeEEEEEEEEeccccCCchhhhhccccCCCCCCCC
Q 035744          159 DAYYVFNHLKFKVLVHKYEEANVARVMGTGDAADVFPTKVNDDVPGYMVVGFEVVPCSVLHNADAVKKSKLYDKYPNPIK  238 (653)
Q Consensus       159 ~~~yL~NH~~f~I~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IVgfeV~P~Sv~~~~~~~~~~~~~~~~~~~~~  238 (653)
                      +++|++||++|+|+||+.++                        ++||||||||+|+|++|..+..++.+ +     ..+
T Consensus       167 ~~~y~~NHl~~~i~yH~~~~------------------------~~~riVgfeV~P~Si~~~~~~~~~~~-~-----~~~  216 (628)
T KOG1278|consen  167 DKYYLHNHLDFVIRYHRDDN------------------------DKYRIVGFEVKPVSIKHEHEKGDSKN-S-----LPT  216 (628)
T ss_pred             cceeEeeeEEEEEEEEecCC------------------------CceEEEEEEEEeeeeecccCCCcccc-c-----CCc
Confidence            89999999999999999765                        67999999999999988654311111 1     246


Q ss_pred             CCCCCCCCCCCCCcc--EEEEEEEEEeecCCCCcchhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 035744          239 CDSNVVSMPIKEGQP--IVFTYEVNFDLSDIKWPSRWDAYLKMEGSKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLT  316 (653)
Q Consensus       239 c~~~~~~~~~~~~~~--i~fTYSV~w~~s~~~w~~Rwd~yl~~~~~~ihw~SIiNS~iivl~L~~~v~~Il~R~lr~D~~  316 (653)
                      |+.+++++.++++++  +.|||||+|+|||++|++|||.||++++.+||||||+||++||++|+++|++|++||||||++
T Consensus       217 c~~~~~~~~~~e~~~~~i~fTYsV~f~esdi~WasRWD~yL~m~~~qIhWfSIiNSlvIVlfLSgiv~mI~lRtl~rDia  296 (628)
T KOG1278|consen  217 CSIPEKPLELDEGEETEIVFTYSVKFEESDIKWASRWDYYLHMEDVQIHWFSIINSLVIVLFLSGIVAMIMLRTLYRDIA  296 (628)
T ss_pred             ccCCCCccccCCCCceEEEEEEEEEEEeccCcchhhHHHHhcCCCCceEEEehhhhHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            776667767777554  999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcHHHHhhhhhhcccceEEeccccCCCCCcchhhhhhccchHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHH
Q 035744          317 RYEELDKEAQAQMNEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYM  396 (653)
Q Consensus       317 ~Yn~~~~~~~~~~~ee~~GWKlvhgDVFR~P~~~~lLs~lvG~G~Qll~~~~~~l~~a~lg~lsp~~rg~l~t~~i~~y~  396 (653)
                      |||++|.|||+|  || +|||+|||||||||+++++||++||+|+|+++|+++++++|++|+++|++||+|+|+++++|+
T Consensus       297 rYne~d~~~d~~--Ee-~GWKLVhGDVFR~P~~~~lLsv~vGsGvQ~l~M~~vti~fA~lGflSPs~RGsLmT~~~~l~v  373 (628)
T KOG1278|consen  297 RYNELDLDDDAQ--EE-SGWKLVHGDVFRPPRNSMLLSVLVGSGVQLLGMILVTIFFACLGFLSPSSRGSLMTAMVLLFV  373 (628)
T ss_pred             hhccccchhhhh--hh-cceEEeecccccCCCCCeEEEEEeccChhhhHHHHHHHHHHHhccCCccccccHHHHHHHHHH
Confidence            999999988887  89 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhHhhHhhhcCCCCchhhHHHhhhhhhhhHHHHHHHHHHHHHHHhhcCCCCcChHHHHHHHHHHHHhhhhhh
Q 035744          397 ILGVAAGYVAVRLWRTIGCGDLKGWISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSLFVILLLLWFCISVPLT  476 (653)
Q Consensus       397 ~~~~iaGyvS~~lyk~~~~g~~~~Wk~~~~lt~~~~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~  476 (653)
                      ++|++|||+|+|+||+++ |++  ||+++++|++++||++|++++++|+++|+++||+|+||+|++++++||++||+||+
T Consensus       374 ~~G~~agY~s~rlyk~~~-g~~--wk~~~~lta~l~PGivf~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLs  450 (628)
T KOG1278|consen  374 FMGFVAGYVSARLYKTFK-GRE--WKRNAILTAFLFPGIVFAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLS  450 (628)
T ss_pred             HHHHhhhhhhhhhHhhhc-CCc--chhhHHhhhhhcchHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHH
Confidence            999999999999999999 999  99999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccCCCCCCCcccCCCCCCCCCCC--CCcchhhhccccccchhhhHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 035744          477 LFGGYLGAKAPHIEYPVRTNQIPREIPAQK--YPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFLLIVLVLL  554 (653)
Q Consensus       477 ~iG~~~g~k~~~~~~P~r~n~ipR~IP~qp--~~~~~~~l~~GilPF~ai~iEl~fi~~SlW~~~~yy~fgfL~i~~iil  554 (653)
                      ++|+++|+|++++|+|+||||||||||.||  +++++.+++||++||++|||||+||++|+|.||+||+|||||++++||
T Consensus       451 f~G~y~g~kk~~~e~PvrTNqIpRqIP~q~~y~~~~~~ili~GilPFg~ifIELfFI~~SiW~~qfYY~FGFLFlvfiiL  530 (628)
T KOG1278|consen  451 FVGGYFGFKKPAIEHPVRTNQIPRQIPEQPWYLNPIPSILIAGILPFGAIFIELFFILSSIWLNQFYYMFGFLFLVFIIL  530 (628)
T ss_pred             HhhHHhhccCCCCCCCcccCCCcccCCCCccccchhhHHHhhcccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999  899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcccCCcceeehhhhccchhHHHHHHHHHHhhhhhccccCCcchhhhHHHHHHHHHHHHHHHhhhH
Q 035744          555 VVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTV  634 (653)
Q Consensus       555 ii~~a~vsI~~tY~~L~~Edy~WwWrSF~~~gs~~~y~flYsi~y~~~~~~~~~g~~~~~lyf~Ys~l~s~~~~l~~Gti  634 (653)
                      +++|+|+||++||+|||+||||||||||++||++|+|+|+||++|+++|+ +++|++++++|||||++++++++|+||||
T Consensus       531 vvtcaeisIvl~Yf~LC~Edy~WwWRsF~~sG~~avY~fiYsi~Y~~~kL-~i~g~~s~~LYfgYsli~~~~~~l~tGtI  609 (628)
T KOG1278|consen  531 VVTCAEISIVLTYFQLCAEDYNWWWRSFLTSGSSAVYVFIYSIFYFFTKL-EISGFVSAVLYFGYSLIISLLFFLLTGTI  609 (628)
T ss_pred             HHHHHHHHHHHHHHHHHhcccceeeeeeeccCcchhhHHHHHHhhhheee-eecccchhHHHHHHHHHHHHHHHHHhccH
Confidence            99999999999999999999999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccCC
Q 035744          635 GFLSSFWFVHYLFSSVKLD  653 (653)
Q Consensus       635 Gflas~~FV~~IY~~iK~D  653 (653)
                      ||+||+|||||||+++|+|
T Consensus       610 GF~a~~~Fv~kIYssvKiD  628 (628)
T KOG1278|consen  610 GFLAAFWFVRKIYSSVKID  628 (628)
T ss_pred             HHHHHHHHHHHHhhheecC
Confidence            9999999999999999998

>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter	Back alignment and domain information

>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		653
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 59/344 (17%), Positives = 106/344 (30%), Gaps = 102/344 (29%)

Query: 29  PHKHVV--GDP------LSVKVNSITSIDTEMPFSYYSLPFCKPQEGVKDSAENLGELLM 80
           P K+V+  G        +++ V     +  +M F  + L          +S E + E+L 
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-----KNCNSPETVLEML- 202

Query: 81  GDRIENSPYRF-KMFTNETDIFLCKTDPLSKDNFELLKRRI--DEMYQVNL-ILDNLPAI 136
               +   Y+    +T+ +D        L   + +   RR+   + Y+  L +L N    
Sbjct: 203 ----QKLLYQIDPNWTSRSDHS--SNIKLRIHSIQAELRRLLKSKPYENCLLVLLN---- 252

Query: 137 RYTKKDGFLLRWTGFPVGVKYQDAYYVFNHLKFKVLVHKYEEANVARVMGTGDAADVFPT 196
                             V+   A+  FN L  K+L+             T         
Sbjct: 253 ------------------VQNAKAWNAFN-LSCKILL------------TTRFKQ----- 276

Query: 197 KVNDDVPGYMVVGFEVVPCSVLHNADAVKKSKLYDKYPNPIKCDSNVVSMP--IKEGQPI 254
            V D +         +   S+    D VK   L  KY +  +       +P  +    P 
Sbjct: 277 -VTDFLSAATTTHISLDHHSMTLTPDEVKS--LLLKYLD-CRPQD----LPREVLTTNPR 328

Query: 255 VFTYEVNFDLSDI-----KWPSRWDAYLKMEGSKVHWFSILNSLMVIT-------FLAGI 302
                    LS I        + WD +  +   K+    I +SL V+        F    
Sbjct: 329 R--------LSIIAESIRDGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDR-- 377

Query: 303 VLVIFLRTVR---RDLTRY-EELDKEAQAQMNEELSGWKLVVGD 342
            L +F  +       L+    ++ K     +  +L  + LV   
Sbjct: 378 -LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00