Citrus Sinensis ID: 035751

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDAVPKAPPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMVEGDHQQMKARRAKRRQR
Secondary Structure (PSIPRED)
cccEEEcccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEcccccHHcccccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHEEEEEEcccc
Coil and Loop (DISEMBL)
mfratdlssnrfcgeipkvLGNFKSLKVLNLshnsltgnipvsfdnmtaleSLDLSFnklegripkqlLSVTTLALLNLSYNrlwgriprgnqfntfendsyignihlcgepltvtcsndavpkappsastdheedettswFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMVEGDHQQMKARRAKRRQR
Flexible Loop (DISEMBL)
mfratdlssnrfcgEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDAVPkappsastdheedETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMVEGDHQQMKARRAKRRQR
Low Complexity Region (SEG)
MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQllsvttlallnlsYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDAVPKAPPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMVEGDHqqmkarrakrrqr
Disordered region (IsUnstruct)
**********RFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS********************TSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMV*****************
Disordered Region (DISOPRED)
MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPL***************************WFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMVEGDHQQMKARRAKR***
Disordered Region (DISEMBL)
********SNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDAV****************TSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMVE****************
Disordered Region (DISPRO)
MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS********************TSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMVEGDHQQMKARRAK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDAVPKAPPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMVEGDHQQMKARRAKRRQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.876	0.201	0.382	3e-25
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.538	0.102	0.490	1e-20
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.769	0.124	0.386	2e-19
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.769	0.124	0.386	5e-19
C0LGF5	1072	Probable LRR receptor-lik	no	no	0.579	0.105	0.486	1e-18
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.815	0.136	0.377	1e-18
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.523	0.085	0.444	2e-18
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.538	0.104	0.471	3e-18
Q00874	372	DNA-damage-repair/tolerat	no	no	0.574	0.301	0.426	3e-18
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.610	0.114	0.434	7e-18

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  114 bits (286), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 97/175 (55%), Gaps = 4/175 (2%)

Query: 2   FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
           FRA D S N+  G IP+ LG  K L+VLNLS N+ T  IP    N+T LE+LD+S NKL 
Sbjct: 660 FRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLS 719

Query: 62  GRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDA 121
           G+IP+ L +++ L+ +N S+N L G +PRG QF   +  S++ N  L G  L   C +  
Sbjct: 720 GQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRDTG 777

Query: 122 VPKAPPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFAR 176
                     D  E E  + F+W  A + Y  G++ GL IG+  +++   +WF  
Sbjct: 778 ALNPTSQLPEDLSEAE-ENMFNWVAAAIAYGPGVLCGLVIGHF-YTSHNHEWFTE 830

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score = 99.8 bits (247), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 68/106 (64%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DLS N   G I    G+ + L VLNL +N+L+GNIP +   MT+LE LDLS N L G IP
Sbjct: 539 DLSYNSLNGSIWPEFGDLRQLHVLNLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGNIP 598

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGE 111
             L+ ++ L+  +++YN+L G IP G QF TF N S+ GN  LCGE
Sbjct: 599 PSLVKLSFLSTFSVAYNKLSGPIPTGVQFQTFPNSSFEGNQGLCGE 644

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 78/158 (49%), Gaps = 8/158 (5%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DLS N+  G IPK LG    L +LNL HN L+G IP     +  +  LDLS+N+  G IP
Sbjct: 669 DLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIP 728

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDAVPKA 125
             L S+T L  ++LS N L G IP    F+TF  D    N  LCG PL + CS+      
Sbjct: 729 NSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFP-DYRFANNSLCGYPLPIPCSS-----G 782

Query: 126 PPSASTDHEEDETTSWFDWKMAKMGYAFGL--VIGLSI 161
           P S +  H++             MG  F L  + GL I
Sbjct: 783 PKSDANQHQKSHRRQASLAGSVAMGLLFSLFCIFGLII 820

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score = 94.4 bits (233), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 78/158 (49%), Gaps = 8/158 (5%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DLS N+  G IPK LG    L +LNL HN L+G IP     +  +  LDLS+N+  G IP
Sbjct: 669 DLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIP 728

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDAVPKA 125
             L S+T L  ++LS N L G IP    F+TF  D    N  LCG PL + CS+      
Sbjct: 729 NSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFP-DYRFANNSLCGYPLPLPCSS-----G 782

Query: 126 PPSASTDHEEDETTSWFDWKMAKMGYAFGL--VIGLSI 161
           P S +  H++             MG  F L  + GL I
Sbjct: 783 PKSDANQHQKSHRRQASLAGSVAMGLLFSLFCIFGLII 820

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF5|Y1341_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2

 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/115 (48%), Positives = 72/115 (62%), Gaps = 2/115 (1%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKV-LNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
           DLS N   GEIP+ LG   SL + L+LS+N+ TGNIP +F ++T L+SLDLS N L G I
Sbjct: 578 DLSYNSLSGEIPQELGQVTSLTINLDLSYNTFTGNIPETFSDLTQLQSLDLSSNSLHGDI 637

Query: 65  PKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSN 119
            K L S+T+LA LN+S N   G IP    F T    SY+ N +LC     +TCS+
Sbjct: 638 -KVLGSLTSLASLNISCNNFSGPIPSTPFFKTISTTSYLQNTNLCHSLDGITCSS 691

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 85/167 (50%), Gaps = 8/167 (4%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           D+S N   G IP   GN   L+VLNL HN +TG IP SF  + A+  LDLS N L+G +P
Sbjct: 645 DISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLP 704

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDAVPKA 125
             L S++ L+ L++S N L G IP G Q  TF    Y  N  LCG PL    S    P+ 
Sbjct: 705 GSLGSLSFLSDLDVSNNNLTGPIPFGGQLTTFPVSRYANNSGLCGVPLRPCGS---APRR 761

Query: 126 PPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQ 172
           P + S  H + +T +         G AF  +  + +   ++  RK Q
Sbjct: 762 PIT-SRIHAKKQTVA----TAVIAGIAFSFMCFVMLVMALYRVRKVQ 803

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 66/108 (61%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           D+S N   G IPK +G+   L +LNL HN ++G+IP    ++  L  LDLS NKL+GRIP
Sbjct: 660 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 719

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPL 113
           + + ++T L  ++LS N L G IP   QF TF    ++ N  LCG PL
Sbjct: 720 QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 767

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score = 91.7 bits (226), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 66/106 (62%), Gaps = 1/106 (0%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           +L  N   G I +  GN K L V +L  N+L+G+IP S   MT+LE+LDLS N+L G IP
Sbjct: 529 ELGHNNLSGPIWEEFGNLKKLHVFDLKWNALSGSIPSSLSGMTSLEALDLSNNRLSGSIP 588

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGE 111
             L  ++ L+  +++YN L G IP G QF TF N S+  N HLCGE
Sbjct: 589 VSLQQLSFLSKFSVAYNNLSGVIPSGGQFQTFPNSSFESN-HLCGE 633

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score = 91.7 bits (226), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 70/136 (51%), Gaps = 24/136 (17%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS---------------------- 43
           DLS N   G IP+ +GN K L +LNL  NSLTG IP S                      
Sbjct: 237 DLSKNHIEGPIPEWMGNMKVLSLLNLDCNSLTGPIPGSLLSNSGLDVANLSRNALEGTIP 296

Query: 44  --FDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDS 101
             F + T L SLDLS N L GRIP  L S   +  L++S+N+L GRIP G  F+  E  S
Sbjct: 297 DVFGSKTYLVSLDLSHNSLSGRIPDSLSSAKFVGHLDISHNKLCGRIPTGFPFDHLEATS 356

Query: 102 YIGNIHLCGEPLTVTC 117
           +  N  LCG PLT +C
Sbjct: 357 FSDNQCLCGGPLTTSC 372

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 70/122 (57%), Gaps = 3/122 (2%)

Query: 7   LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
           L++NR  G I   +G  K L +L+LS N+ TG IP S   +  LE LDLS+N L G IP 
Sbjct: 543 LNNNRLNGTILPEIGRLKELHMLDLSRNNFTGTIPDSISGLDNLEVLDLSYNHLYGSIPL 602

Query: 67  QLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLC---GEPLTVTCSNDAVP 123
              S+T L+  +++YNRL G IP G QF +F + S+ GN+ LC     P  V  SN   P
Sbjct: 603 SFQSLTFLSRFSVAYNRLTGAIPSGGQFYSFPHSSFEGNLGLCRAIDSPCDVLMSNMLNP 662

Query: 124 KA 125
           K 
Sbjct: 663 KG 664

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
224116970	921	predicted protein [Populus trichocarpa]	0.964	0.204	0.572	9e-56
255568090	1014	serine/threonine-protein kinase bri1, pu	0.912	0.175	0.569	3e-53
296082718	745	unnamed protein product [Vitis vinifera]	0.912	0.238	0.562	1e-50
225462116	1001	PREDICTED: receptor-like protein 12-like	0.912	0.177	0.562	1e-50
147826872	751	hypothetical protein VITISV_000530 [Viti	0.912	0.237	0.557	7e-50
224111710	1176	predicted protein [Populus trichocarpa]	0.953	0.158	0.553	2e-49
224152304	242	predicted protein [Populus trichocarpa]	0.953	0.768	0.537	4e-48
359493539	1001	PREDICTED: receptor-like protein 12-like	0.943	0.183	0.563	7e-48
224110132	1014	predicted protein [Populus trichocarpa]	0.964	0.185	0.536	9e-48
296089526	616	unnamed protein product [Vitis vinifera]	0.887	0.280	0.573	2e-47

>gi|224116970|ref|XP_002331797.1| predicted protein [Populus trichocarpa] gi|222874493|gb|EEF11624.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (564), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 110/192 (57%), Positives = 137/192 (71%), Gaps = 4/192 (2%)

Query: 1   MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
           +F   DLSSNRF G+IPK +G   SL VLN+S NS+TG IP S  N+TALESLDLS N L
Sbjct: 732 IFTTIDLSSNRFEGQIPKEVGLLSSLIVLNISRNSVTGQIPSSLGNLTALESLDLSSNGL 791

Query: 61  EGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSND 120
            G IP QL  +T LA+LNLSYN+L G IP G+QF+TF+NDSY+GN+ LCG PL+V CS D
Sbjct: 792 GGGIPSQLTRLTFLAVLNLSYNQLVGPIPHGSQFDTFQNDSYVGNLRLCGFPLSVKCSGD 851

Query: 121 AVPKAPPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMVEG 180
             P+ PP      E+++  S F+WK A +GY  GLVIGLS+GY+VF+  KPQWF R VE 
Sbjct: 852 VAPQPPPF----QEKEDPASLFNWKFAMIGYGCGLVIGLSVGYIVFTTGKPQWFVRKVEV 907

Query: 181 DHQQMKARRAKR 192
           + ++   RR KR
Sbjct: 908 EQKKWLRRRTKR 919

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568090|ref|XP_002525021.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223535683|gb|EEF37348.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 102/179 (56%), Positives = 130/179 (72%), Gaps = 1/179 (0%)

Query: 1   MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
           +    D SSN F GEIP+ +G  KSL VLN SHNSLTG IP+SF N+T +ESLDLS NKL
Sbjct: 816 ILTVVDCSSNEFRGEIPEEIGMLKSLVVLNFSHNSLTGRIPLSFANLTNMESLDLSSNKL 875

Query: 61  EGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSND 120
            G IP QL  ++ LA+LNL++N+L G+IP+G QFNTF NDSY+GN+ LCG PL+  CS+ 
Sbjct: 876 VGEIPSQLTLLSFLAVLNLTFNQLKGQIPQGKQFNTFANDSYVGNLGLCGFPLSQKCSSG 935

Query: 121 AVPKAPPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMVE 179
             P+  PS    HEE+++  WFDWK A MGY  G+V GLS+GY+V + RKPQW  R++E
Sbjct: 936 EPPQLSPSP-IPHEEEDSQGWFDWKFALMGYGCGMVFGLSMGYIVLATRKPQWIVRIIE 993

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082718|emb|CBI21723.3| unnamed protein product [Vitis vinifera]

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 103/183 (56%), Positives = 126/183 (68%), Gaps = 5/183 (2%)

Query: 2   FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
           F   DLSSNRF GEI   +G+  SL+ LNLSHN+LTG+IP S  N+  LESLDLS NKL 
Sbjct: 551 FTTIDLSSNRFQGEILDFIGSLSSLRELNLSHNNLTGHIPSSLGNLMVLESLDLSSNKLS 610

Query: 62  GRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDA 121
           GRIP++L S+T L +LNLS N L G IPRGNQF+TF N+SY GNI LCG PL+  C  D 
Sbjct: 611 GRIPRELTSLTFLEVLNLSKNHLTGVIPRGNQFDTFANNSYSGNIGLCGLPLSKKCVVDE 670

Query: 122 VPKAPPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMVEGD 181
            P+ P       EE E+ + FDWK+  MGY  GLV+GL +G +VF  RKP+WF  M+EGD
Sbjct: 671 APQPP-----KEEEVESDTGFDWKVILMGYGCGLVVGLFMGCLVFLTRKPKWFVTMIEGD 725

Query: 182 HQQ 184
             +
Sbjct: 726 RHK 728

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462116|ref|XP_002263233.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 103/183 (56%), Positives = 126/183 (68%), Gaps = 5/183 (2%)

Query: 2   FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
           F   DLSSNRF GEI   +G+  SL+ LNLSHN+LTG+IP S  N+  LESLDLS NKL 
Sbjct: 807 FTTIDLSSNRFQGEILDFIGSLSSLRELNLSHNNLTGHIPSSLGNLMVLESLDLSSNKLS 866

Query: 62  GRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDA 121
           GRIP++L S+T L +LNLS N L G IPRGNQF+TF N+SY GNI LCG PL+  C  D 
Sbjct: 867 GRIPRELTSLTFLEVLNLSKNHLTGVIPRGNQFDTFANNSYSGNIGLCGLPLSKKCVVDE 926

Query: 122 VPKAPPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMVEGD 181
            P+ P       EE E+ + FDWK+  MGY  GLV+GL +G +VF  RKP+WF  M+EGD
Sbjct: 927 APQPP-----KEEEVESDTGFDWKVILMGYGCGLVVGLFMGCLVFLTRKPKWFVTMIEGD 981

Query: 182 HQQ 184
             +
Sbjct: 982 RHK 984

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147826872|emb|CAN73268.1| hypothetical protein VITISV_000530 [Vitis vinifera]

 Score =  202 bits (513), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 102/183 (55%), Positives = 125/183 (68%), Gaps = 5/183 (2%)

Query: 2   FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
           F   DLSSNRF GEI   +G+  SL+ LNLSHN+LTG+IP S  N+  LESLDLS NKL 
Sbjct: 557 FTTIDLSSNRFQGEILDFIGSLSSLRELNLSHNNLTGHIPSSLGNLMVLESLDLSSNKLS 616

Query: 62  GRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDA 121
           GRIP++L S+T L +LNLS N L G IPRGNQF+TF N+SY GNI LCG PL+  C  D 
Sbjct: 617 GRIPRELTSLTFLEVLNLSKNHLTGVIPRGNQFDTFANNSYSGNIGLCGFPLSKKCVVDE 676

Query: 122 VPKAPPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMVEGD 181
            P+ P       EE E+ + FDWK+  MGY  GLV+GL +G +VF  RKP+W   M+EGD
Sbjct: 677 APQPP-----KEEEVESDTGFDWKVILMGYGCGLVVGLFMGCLVFLTRKPKWLVTMIEGD 731

Query: 182 HQQ 184
             +
Sbjct: 732 RHK 734

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111710|ref|XP_002332892.1| predicted protein [Populus trichocarpa] gi|222833737|gb|EEE72214.1| predicted protein [Populus trichocarpa]

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 104/188 (55%), Positives = 125/188 (66%), Gaps = 2/188 (1%)

Query: 6    DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            DLS N+F G+IP+ LG  KSL  LNLSHNSL G I  S  N+T LESLDLS N L GRIP
Sbjct: 981  DLSCNKFTGKIPESLGKLKSLIQLNLSHNSLVGYIQPSLGNLTNLESLDLSSNLLAGRIP 1040

Query: 66   KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDAVPKA 125
             QL+ +T L +LNLSYN+L G IP+G QFNTFEN SY GN+ LCG PL V C N    + 
Sbjct: 1041 PQLVDLTFLQVLNLSYNQLEGPIPQGKQFNTFENGSYEGNLGLCGLPLQVKC-NKGEGQQ 1099

Query: 126  PPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMVEGDHQQM 185
            PP ++ + E+      F WK   MGY  G V G+SIGY+VF ARKP WF +MVE D    
Sbjct: 1100 PPPSNFEKEDSMFEEGFGWKAVAMGYGCGFVFGVSIGYVVFRARKPAWFVKMVE-DSAHQ 1158

Query: 186  KARRAKRR 193
             A+R +R+
Sbjct: 1159 NAKRLRRK 1166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224152304|ref|XP_002337217.1| predicted protein [Populus trichocarpa] gi|222838492|gb|EEE76857.1| predicted protein [Populus trichocarpa]

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 101/188 (53%), Positives = 124/188 (65%), Gaps = 2/188 (1%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DLS N+F G++P+ LG  KSL  LNLSHNSL G I  S  N+T LESLDLS N L GRIP
Sbjct: 46  DLSCNKFTGKMPESLGKLKSLIQLNLSHNSLIGYIQPSLGNLTNLESLDLSSNLLAGRIP 105

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDAVPKA 125
            QL+ +T L +LNLSYN L G IP+G QF+TFEN SY GN+ LCG PL V C N+   + 
Sbjct: 106 PQLVDLTFLQVLNLSYNHLEGPIPQGKQFSTFENGSYEGNLGLCGLPLQVKC-NEGEGQQ 164

Query: 126 PPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMVEGDHQQM 185
           PP ++ + E+      F WK   MGY  G V G+SIGY+VF ARKP WF +MVE    Q 
Sbjct: 165 PPPSNFEKEDSMFEEGFGWKAVAMGYGCGFVFGVSIGYVVFRARKPAWFVKMVEASAHQY 224

Query: 186 KARRAKRR 193
             +R +R+
Sbjct: 225 -GKRLRRK 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493539|ref|XP_002267388.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  195 bits (496), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 107/190 (56%), Positives = 129/190 (67%), Gaps = 6/190 (3%)

Query: 2   FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
           F   DLSSN+F GEIPK +GN  SL+ LNLSHN+LTG IP SF N+ +LESLDLS N+L 
Sbjct: 807 FTTVDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNLTGLIPSSFGNLKSLESLDLSSNELI 866

Query: 62  GRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDA 121
           G IP+QL S+T L +LNLS N L G IPRGNQF+TF NDSY  N  LCG PL+  C  D 
Sbjct: 867 GSIPQQLTSLTFLEVLNLSQNHLTGFIPRGNQFDTFGNDSYNENSGLCGFPLSKKCIADE 926

Query: 122 VPKAPPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMVEGD 181
            P+  PS   D + D     FDWK+  MGY  GLVIGLS+G +VF   KP+WF  ++E D
Sbjct: 927 TPE--PSKEADAKFD---GGFDWKITLMGYGCGLVIGLSLGCLVFLTGKPKWFVWIIE-D 980

Query: 182 HQQMKARRAK 191
           +   K RR+K
Sbjct: 981 NIHKKIRRSK 990

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110132|ref|XP_002333149.1| predicted protein [Populus trichocarpa] gi|222834987|gb|EEE73436.1| predicted protein [Populus trichocarpa]

 Score =  195 bits (495), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 103/192 (53%), Positives = 125/192 (65%), Gaps = 4/192 (2%)

Query: 3    RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG 62
            R  DLS+N F GEIPK++G  K+L+ LNLSHNSLTG I  S  N+T LESLDLS N L G
Sbjct: 815  RVLDLSNNNFTGEIPKMIGKLKALQQLNLSHNSLTGQIQSSLGNLTNLESLDLSSNLLTG 874

Query: 63   RIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDAV 122
            RIP QL  +T LA+LNLS+N+L GRIP G QFNTF   S+ GN+ LCG  +   C  D  
Sbjct: 875  RIPTQLGGLTFLAILNLSHNQLEGRIPSGEQFNTFTATSFEGNLGLCGFQVLKECYGDEA 934

Query: 123  PKAPPSASTDHEEDETT--SWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMVEG 180
            P  PPS S D  +D T     F WK   MGY  G V G++ GY+VF  RKP WF RMVE 
Sbjct: 935  PSLPPS-SFDEGDDSTLFGGGFGWKAVTMGYGCGFVFGVATGYIVFRTRKPSWFFRMVE- 992

Query: 181  DHQQMKARRAKR 192
            D   +K+++ K+
Sbjct: 993  DIWNLKSKKTKK 1004

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089526|emb|CBI39345.3| unnamed protein product [Vitis vinifera]

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/178 (57%), Positives = 123/178 (69%), Gaps = 5/178 (2%)

Query: 2   FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
           F   DLSSN+F GEIP+ +GN  SL+ LNLSHN+L G+IP SF N+  LESLDLS NKL 
Sbjct: 422 FTTIDLSSNKFQGEIPESIGNLNSLRELNLSHNNLVGHIPSSFGNLKLLESLDLSSNKLI 481

Query: 62  GRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDA 121
           GRIP++L S+T L +LNLS N L G IPRGNQF TF NDSY GN  LCG PL+  C+ D 
Sbjct: 482 GRIPQELTSLTFLEVLNLSQNHLTGFIPRGNQFETFGNDSYNGNSGLCGFPLSKKCTTDE 541

Query: 122 VPKAPPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMVE 179
             +  PS   D E +   S FDWK+  MGY  GLVIGLS+G  +F   KP+WF R++E
Sbjct: 542 TLE--PSKEADAEFE---SGFDWKITLMGYGCGLVIGLSLGCFIFLTGKPEWFVRIIE 594

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.887	0.193	0.408	3.5e-30
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.882	0.196	0.398	1.4e-29
TAIR|locus:2046397	589	RLP22 "receptor like protein 2	0.861	0.285	0.417	2e-29
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.892	0.244	0.406	3.1e-29
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.882	0.199	0.401	4.7e-29
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.882	0.182	0.396	6.4e-29
TAIR|locus:2829370	915	RLP40 "receptor like protein 4	0.871	0.185	0.408	8.7e-29
TAIR|locus:2046600	800	RLP26 "receptor like protein 2	0.876	0.213	0.398	3.7e-28
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.876	0.192	0.405	4.6e-28
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.866	0.170	0.393	7.3e-28

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 3.5e-30, Sum P(2) = 3.5e-30
 Identities = 71/174 (40%), Positives = 96/174 (55%)

Query:     1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
             ++ A D S N+F GEIPK +G  K L VLNLS+N+ TG+IP S  N+TALESLD+S NKL
Sbjct:   704 IYTAVDFSGNKFEGEIPKSIGLLKELHVLNLSNNAFTGHIPSSIGNLTALESLDVSQNKL 763

Query:    61 EGRIPKQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSND 120
              G IP++             +N+L G +P G QF T    S+ GN+ L G  L   C + 
Sbjct:   764 YGEIPQEIGNLSLLSYMNFSHNQLTGLVPGGQQFLTQRCSSFEGNLGLFGSSLEEVCRDI 823

Query:   121 AVPKAPPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWF 174
               P +     T   E+E      W  A +G+  G+  GL  GY++ S  KP+WF
Sbjct:   824 HTPASHQQFETPQTEEEDEDLISWIAAAIGFGPGIAFGLMFGYILVSY-KPEWF 876

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
 Identities = 71/178 (39%), Positives = 103/178 (57%)

Query:     1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
             ++ A D S N+F GEIP+ +G  K L +LNLS N  TG+IP S  N+  LESLD+S NKL
Sbjct:   688 IYTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKL 747

Query:    61 EGRIPKQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSND 120
              G IP++             +N+L G++P G QF T    S+  N+ LCG PL   C   
Sbjct:   748 SGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCGRPLE-ECR-- 804

Query:   121 AVPKAPPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMV 178
              V +  PS  ++  E E      W  A +G+  G+V+GL+IG++V S+ KP+WF +++
Sbjct:   805 VVHEPTPSGESETLESEQV--LSWIAAAIGFTPGIVLGLTIGHIVLSS-KPRWFFKVL 859

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 2.0e-29, P = 2.0e-29
 Identities = 73/175 (41%), Positives = 101/175 (57%)

Query:     2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
             + A D S N+  GEIP+ +G  K+L  LNLS+NS TG+IP+SF N+T LESLDLS NKL 
Sbjct:   409 YSAIDFSGNKLEGEIPESIGLLKTLIALNLSNNSFTGHIPMSFANVTELESLDLSGNKLS 468

Query:    62 GRIPKQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDA 121
             G IP++              N+L G+IP+G Q       S+ GN  LCG PL  +C  + 
Sbjct:   469 GEIPQELGRLSYLAYIDVSDNQLTGKIPQGTQIIGQPKSSFEGNSGLCGLPLEESCLRED 528

Query:   122 VPKAPPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFAR 176
              P      ST   E+E     +W+ A +GY  G++ GL+IG++V +  KP WF +
Sbjct:   529 AP------STQEPEEEEEEILEWRAAAIGYGPGVLFGLAIGHVV-ALYKPGWFIK 576

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 3.1e-29, Sum P(2) = 3.1e-29
 Identities = 72/177 (40%), Positives = 99/177 (55%)

Query:     1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
             ++ A D S N+F GEIPK +G  K L VLNLS+N+ TG+IP S   +TALESLD+S NKL
Sbjct:   521 IYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFTGHIPSSMGKLTALESLDVSQNKL 580

Query:    61 EGRIPKQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSND 120
              G IP++             +N+L G +P G QF T    S+  N+ L G  L   C + 
Sbjct:   581 YGEIPQEIGNLSFLSCMNFSHNQLAGLVPGGQQFLTQPCSSFEDNLGLFGSTLEEDCRDI 640

Query:   121 AVPKAPPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGY-MVFSARKPQWFAR 176
               P +     T   E+E      W  A +G+  G+V+GL+IGY +VF   KP+WF +
Sbjct:   641 HTPASHQQYKTPETEEEDEEVISWIAAAIGFIPGIVLGLTIGYILVFY--KPEWFIK 695

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 4.7e-29, P = 4.7e-29
 Identities = 71/177 (40%), Positives = 101/177 (57%)

Query:     2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
             + A D S NR  G+IP+ +G  K+L  LNLS+N+ TG+IP+SF N+  LESLD+S N+L 
Sbjct:   691 YAAIDFSGNRLQGQIPESIGLLKALIALNLSNNAFTGHIPLSFANLMNLESLDMSGNQLS 750

Query:    62 GRIPKQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDA 121
             G IP               +N+L G IP+G Q       S+ GN  LCG PL  TC + +
Sbjct:   751 GTIPNGLGSLSFLVYISVAHNKLKGEIPQGTQITGQIKSSFEGNAGLCGLPLQETCFDSS 810

Query:   122 VPKAPPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMV 178
             VP   P    D E+ E     +WK   +GYA GL+ GL+I +++ S  KP+W  +++
Sbjct:   811 VPPIQPKQE-DEEKGEV---INWKAVAIGYAPGLLFGLAIAHLIASY-KPEWLVKII 862

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 6.4e-29, Sum P(2) = 6.4e-29
 Identities = 69/174 (39%), Positives = 100/174 (57%)

Query:     1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
             ++ A D S N+F GEIPK +G  K L VLNLS+N+  G+IP S  N+TALESLD+S NKL
Sbjct:   755 IYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFGGHIPSSMGNLTALESLDVSQNKL 814

Query:    61 EGRIPKQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSND 120
              G IP++             +N+L G +P G QF      ++  N+ L G  L   C + 
Sbjct:   815 TGEIPQELGDLSFLAYMNFSHNQLAGLVPGGTQFRRQNCSAFENNLGLFGPSLDEVCRDK 874

Query:   121 AVPKAPPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWF 174
               P +  + +T+ EE++      W  A +G+  G+V GL+IGY++ S  KP+WF
Sbjct:   875 HTPASQQNETTETEEEDEEE-ISWIAAAIGFIPGIVFGLTIGYILVSY-KPEWF 926

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2829370 RLP40 "receptor like protein 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 8.7e-29, P = 8.7e-29
 Identities = 71/174 (40%), Positives = 97/174 (55%)

Query:     6 DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
             D S NR  GEIP+ +G  K+L  LNLS+N+ TG+IP+SF N+  +ESLDLS N+L G IP
Sbjct:   739 DFSGNRLEGEIPESIGLLKALIALNLSNNAFTGHIPLSFANLKKMESLDLSSNQLSGTIP 798

Query:    66 KQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDAVPKA 125
                            +N+L G IP+G Q       S+ GN  LCG PL  +C     P A
Sbjct:   799 NGLRTLSFLAYVNVSHNQLIGEIPQGTQITGQPKSSFEGNAGLCGFPLQESCFGTNTPPA 858

Query:   126 P-PSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMV 178
               P    + EEDE     +WK   +GY  G+++GL+I  ++ S  KP+W A +V
Sbjct:   859 QHPKEQEEEEEDEQV--LNWKAVAIGYGIGVLLGLAIAQLI-SLYKPKWLASLV 909

GO:0009507 "chloroplast" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046600 RLP26 "receptor like protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.7e-28, P = 3.7e-28
 Identities = 71/178 (39%), Positives = 103/178 (57%)

Query:     2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
             +   D S N+  G+IP+ +G  K L  LNLS+N+ TG+IP+S  N+T LESLDLS N+L 
Sbjct:   594 YSTIDFSGNKLEGQIPESIGLLKELIALNLSNNAFTGHIPMSLANVTELESLDLSRNQLS 653

Query:    62 GRIPKQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDA 121
             G IP++             +N+L G IP+G QF+     S+ GN+ LCG PL  +C   A
Sbjct:   654 GNIPRELGSLSFLAYISVAHNQLKGEIPQGPQFSGQAESSFEGNVGLCGLPLQGSCV--A 711

Query:   122 VP-KAPPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMV 178
              P K P     + EEDE     +WK    GY  GL++GL + +++ S  KP+WF +++
Sbjct:   712 PPTKYPKEEDEEEEEDEV---IEWKAVFFGYWPGLLLGLVMAHVIASF-KPKWFVKIL 765

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 4.6e-28, P = 4.6e-28
 Identities = 71/175 (40%), Positives = 98/175 (56%)

Query:     6 DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
             DLS NR  GEIP+ LG  K+L  LNLS+N+ TG+IP+S  N+  +ESLDLS N+L G IP
Sbjct:   706 DLSGNRLEGEIPESLGLLKALIALNLSNNAFTGHIPLSLANLKKIESLDLSSNQLSGTIP 765

Query:    66 KQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTC-SNDAVPK 124
                            +N+L G IP+G Q       S+ GN  LCG PL  +C   +A P 
Sbjct:   766 NGLGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKSSFEGNAGLCGFPLQESCFGTNAPPA 825

Query:   125 APPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMVE 179
               P    + EEDE     +WK   +GY  G+++GL+I  ++ S  KP+W   +V+
Sbjct:   826 QKPKEEEEAEEDEQE--LNWKAVAIGYGVGVLLGLAIAQLIASY-KPEWLVCLVK 877

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 7.3e-28, Sum P(2) = 7.3e-28
 Identities = 70/178 (39%), Positives = 100/178 (56%)

Query:     2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
             +   D + N+  G+IP+ +G  K L VLNLS N+ TG+IP S  N+T LESLD+S NK+ 
Sbjct:   806 YTVIDFAGNKIQGKIPESVGILKELHVLNLSSNAFTGHIPSSLANLTNLESLDISQNKIG 865

Query:    62 GRIPKQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDA 121
             G IP +             +N+L G IP+G QF+     SY GN  + G  L   C +  
Sbjct:   866 GEIPPELGTLSSLEWINVSHNQLVGSIPQGTQFHRQNCSSYEGNPGIYGSSLKDVCGDIH 925

Query:   122 VPKAP----P-SASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWF 174
              P+ P    P S+S+  EEDE  SW     A +G+A G+V GL++GY + ++ K +WF
Sbjct:   926 APRPPQAVLPHSSSSSSEEDELISWI---AACLGFAPGMVFGLTMGY-IMTSHKHEWF 979

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_182000003 hypothetical protein (921 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	195
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-23
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-06
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-05

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 96.1 bits (239), Expect = 3e-23
 Identities = 49/106 (46%), Positives = 61/106 (57%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            LS N+  GEIP  L + K L  L+LSHN L+G IP SF  M  L  LDLS N+L G IP
Sbjct: 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGE 111
           K L +V +L  +N+S+N L G +P    F      +  GNI LCG 
Sbjct: 565 KNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG 610

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 88.7 bits (220), Expect = 1e-20
 Identities = 51/154 (33%), Positives = 70/154 (45%), Gaps = 36/154 (23%)

Query: 14  GEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTT 73
           G IP  +   + L+ +NLS NS+ GNIP S  ++T+LE LDLS+N   G IP+ L  +T+
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 74  LALLNLSYNRLWGRIP--------RGNQFNTFENDSYIGNIHLCGEPLTVTCSNDAVPKA 125
           L +LNL+ N L GR+P            FN      +  N  LCG P    C     P  
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFN------FTDNAGLCGIPGLRACG----PHL 541

Query: 126 PPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGL 159
                                AK+G AFG+ +  
Sbjct: 542 SVG------------------AKIGIAFGVSVAF 557

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 83.4 bits (206), Expect = 8e-19
 Identities = 42/84 (50%), Positives = 56/84 (66%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DLS+N   GEIP  +G+F SLKVL+L  N L G IP S  N+T+LE L L+ N+L G+IP
Sbjct: 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP 205

Query: 66  KQLLSVTTLALLNLSYNRLWGRIP 89
           ++L  + +L  + L YN L G IP
Sbjct: 206 RELGQMKSLKWIYLGYNNLSGEIP 229

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 75.7 bits (186), Expect = 4e-16
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L+ N+F G +P   G+ K L+ L+LS N  +G +P    +++ L  L LS NKL G IP
Sbjct: 458 SLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516

Query: 66  KQLLSVTTLALLNLSYNRLWGRIP 89
            +L S   L  L+LS+N+L G+IP
Sbjct: 517 DELSSCKKLVSLDLSHNQLSGQIP 540

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.9 bits (184), Expect = 7e-16
 Identities = 37/86 (43%), Positives = 49/86 (56%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DL  N   G IP  LGN K+L+ L L  N L+G IP S  ++  L SLDLS N L G IP
Sbjct: 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRG 91
           + ++ +  L +L+L  N   G+IP  
Sbjct: 302 ELVIQLQNLEILHLFSNNFTGKIPVA 327

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.5 bits (183), Expect = 7e-16
 Identities = 38/83 (45%), Positives = 47/83 (56%)

Query: 7   LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
           L  N   GEIP  +G   SL  L+L +N+LTG IP S  N+  L+ L L  NKL G IP 
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278

Query: 67  QLLSVTTLALLNLSYNRLWGRIP 89
            + S+  L  L+LS N L G IP
Sbjct: 279 SIFSLQKLISLDLSDNSLSGEIP 301

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.1 bits (182), Expect = 1e-15
 Identities = 37/86 (43%), Positives = 52/86 (60%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DLS N   GEIP+++   ++L++L+L  N+ TG IPV+  ++  L+ L L  NK  G IP
Sbjct: 290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRG 91
           K L     L +L+LS N L G IP G
Sbjct: 350 KNLGKHNNLTVLDLSTNNLTGEIPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.1 bits (182), Expect = 1e-15
 Identities = 35/87 (40%), Positives = 48/87 (55%)

Query: 3   RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG 62
           +  DL  N   G+IP  L N  SL+ L L+ N L G IP     M +L+ + L +N L G
Sbjct: 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226

Query: 63  RIPKQLLSVTTLALLNLSYNRLWGRIP 89
            IP ++  +T+L  L+L YN L G IP
Sbjct: 227 EIPYEIGGLTSLNHLDLVYNNLTGPIP 253

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.3 bits (180), Expect = 2e-15
 Identities = 37/83 (44%), Positives = 51/83 (61%)

Query: 7   LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
           L+SN+  G+IP+ LG  KSLK + L +N+L+G IP     +T+L  LDL +N L G IP 
Sbjct: 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254

Query: 67  QLLSVTTLALLNLSYNRLWGRIP 89
            L ++  L  L L  N+L G IP
Sbjct: 255 SLGNLKNLQYLFLYQNKLSGPIP 277

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 69.5 bits (170), Expect = 5e-14
 Identities = 38/85 (44%), Positives = 47/85 (55%)

Query: 7   LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
           L SN+F GEIPK LG   +L VL+LS N+LTG IP    +   L  L L  N LEG IPK
Sbjct: 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398

Query: 67  QLLSVTTLALLNLSYNRLWGRIPRG 91
            L +  +L  + L  N   G +P  
Sbjct: 399 SLGACRSLRRVRLQDNSFSGELPSE 423

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.4 bits (162), Expect = 6e-13
 Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           D+S+N   G I     +  SL++L+L+ N   G +P SF +   LE+LDLS N+  G +P
Sbjct: 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVP 492

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPR 90
           ++L S++ L  L LS N+L G IP 
Sbjct: 493 RKLGSLSELMQLKLSENKLSGEIPD 517

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.0 bits (161), Expect = 7e-13
 Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 9/111 (8%)

Query: 3   RATDLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
           +  +LS+N+  G IP  +     SL+ LNLS+N+ TG+IP     +  LE+LDLS N L 
Sbjct: 96  QTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLS 153

Query: 62  GRIPKQLLSVTTLALLNLSYNRLWGRIPR--GN----QFNTFENDSYIGNI 106
           G IP  + S ++L +L+L  N L G+IP    N    +F T  ++  +G I
Sbjct: 154 GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.6 bits (160), Expect = 1e-12
 Identities = 38/88 (43%), Positives = 58/88 (65%), Gaps = 2/88 (2%)

Query: 3   RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG 62
           R  +LS+N F G IP+  G+  +L+ L+LS+N L+G IP    + ++L+ LDL  N L G
Sbjct: 121 RYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG 178

Query: 63  RIPKQLLSVTTLALLNLSYNRLWGRIPR 90
           +IP  L ++T+L  L L+ N+L G+IPR
Sbjct: 179 KIPNSLTNLTSLEFLTLASNQLVGQIPR 206

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 63.7 bits (155), Expect = 4e-12
 Identities = 34/93 (36%), Positives = 52/93 (55%)

Query: 7   LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
           L SN   GEIPK LG  +SL+ + L  NS +G +P  F  +  +  LD+S N L+GRI  
Sbjct: 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446

Query: 67  QLLSVTTLALLNLSYNRLWGRIPRGNQFNTFEN 99
           +   + +L +L+L+ N+ +G +P        EN
Sbjct: 447 RKWDMPSLQMLSLARNKFFGGLPDSFGSKRLEN 479

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 63.3 bits (154), Expect = 6e-12
 Identities = 32/84 (38%), Positives = 44/84 (52%)

Query: 7   LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
           L  N+  G IP  + + + L  L+LS NSL+G IP     +  LE L L  N   G+IP 
Sbjct: 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326

Query: 67  QLLSVTTLALLNLSYNRLWGRIPR 90
            L S+  L +L L  N+  G IP+
Sbjct: 327 ALTSLPRLQVLQLWSNKFSGEIPK 350

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.4 bits (149), Expect = 3e-11
 Identities = 36/84 (42%), Positives = 43/84 (51%)

Query: 7   LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
           L SN F G+IP  L +   L+VL L  N  +G IP +      L  LDLS N L G IP+
Sbjct: 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374

Query: 67  QLLSVTTLALLNLSYNRLWGRIPR 90
            L S   L  L L  N L G IP+
Sbjct: 375 GLCSSGNLFKLILFSNSLEGEIPK 398

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 7e-09
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 29  LNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRI 88
           L L +  L G IP     +  L+S++LS N + G IP  L S+T+L +L+LSYN   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 89  P 89
           P
Sbjct: 483 P 483

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 49.5 bits (119), Expect = 8e-09
 Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 6  DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
          DLS+NR    IP        +LKVL+LS N+LT   P +F  + +L SLDLS N L
Sbjct: 6  DLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.1 bits (130), Expect = 9e-09
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 8   SSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQ 67
           SS   C        N   +  ++LS  +++G I  +   +  +++++LS N+L G IP  
Sbjct: 53  SSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDD 112

Query: 68  LL-SVTTLALLNLSYNRLWGRIPRGNQFN 95
           +  + ++L  LNLS N   G IPRG+  N
Sbjct: 113 IFTTSSSLRYLNLSNNNFTGSIPRGSIPN 141

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.1 bits (130), Expect = 9e-09
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 7   LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
           L  N F GE+P        +  L++S+N+L G I     +M +L+ L L+ NK  G +P 
Sbjct: 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP- 469

Query: 67  QLLSVTTLALLNLSYNRLWGRIPRG 91
                  L  L+LS N+  G +PR 
Sbjct: 470 DSFGSKRLENLDLSRNQFSGAVPRK 494

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.8 bits (112), Expect = 1e-07
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 25 SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRL 84
          +LK L+LS+N LT     +F  +  L+ LDLS N L    P+    + +L  L+LS N L
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 20/38 (52%), Positives = 27/38 (71%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS 43
           DLS N F G IP+ LG   SL++LNL+ NSL+G +P +
Sbjct: 472 DLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 4/80 (5%)

Query: 6   DLSSNRFCGEIPKVLGNFKS-LKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
           DL +N    +IP ++G  KS LK L+LS N +  ++P    N+  L++LDLSFN L   +
Sbjct: 122 DLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DL 178

Query: 65  PKQLLSVTTLALLNLSYNRL 84
           PK L +++ L  L+LS N++
Sbjct: 179 PKLLSNLSNLNNLDLSGNKI 198

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 7e-06
 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 6/110 (5%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DLS+N    E+   L N K+L  L LS+N L  ++P S  N++ LE+LDLS N++   I 
Sbjct: 215 DLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SIS 271

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTV 115
             L S+T L  L+LS N L   +P             + N+ L  + L +
Sbjct: 272 S-LGSLTNLRELDLSGNSLSNALP--LIALLLLLLELLLNLLLTLKALEL 318

Length = 394

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 40.6 bits (96), Expect = 1e-05
 Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 2/38 (5%)

Query: 24 KSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
           +L+ L+LS+N +T ++P    N+  LE+LDLS NK+ 
Sbjct: 1  TNLETLDLSNNQIT-DLP-PLSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DL+ NR    I ++L    +L  L+L +N++T   P+     + L+ LDLS NK+E  +P
Sbjct: 99  DLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLP 156

Query: 66  KQLLSVTTLALLNLSYNRL 84
             L ++  L  L+LS+N L
Sbjct: 157 SPLRNLPNLKNLDLSFNDL 175

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DLS N    ++PK+L N  +L  L+LS N ++ ++P   + ++ALE LDLS N +   + 
Sbjct: 169 DLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELL 225

Query: 66  KQLLSVTTLALLNLSYNRL 84
             L ++  L+ L LS N+L
Sbjct: 226 SSLSNLKNLSGLELSNNKL 244

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
PLN03150	623	hypothetical protein; Provisional	99.79
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.77
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.56
PLN03150	623	hypothetical protein; Provisional	99.33
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.21
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.17
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.17
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.16
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.13
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.11
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.88
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.86
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.86
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.84
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.81
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.71
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.69
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.64
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.63
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.59
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.57
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.51
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.47
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.46
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.46
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.45
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.44
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.42
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.41
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.37
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.33
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.28
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.25
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.15
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.1
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.0
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.97
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.96
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.95
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.93
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.84
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.84
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.81
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.78
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.26
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.23
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.2
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.14
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.6
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.41
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.41
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.36
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.23
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.75
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.7
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.65
PRK15386	426	type III secretion protein GogB; Provisional	95.64
PRK15386	426	type III secretion protein GogB; Provisional	95.46
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.39
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.38
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.04
smart00370	26	LRR Leucine-rich repeats, outliers.	94.81
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.81
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.12
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.06
smart00370	26	LRR Leucine-rich repeats, outliers.	94.01
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.01
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	91.87
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	91.83
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	91.37
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	91.31
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	91.22
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.39
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.76
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	88.42
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	88.39
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	88.28
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.84
PF01299	306	Lamp: Lysosome-associated membrane glycoprotein (L	85.41
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	84.64
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	81.45

>PLN03150 hypothetical protein; Provisional

Probab=99.79  E-value=5.5e-19  Score=153.14  Aligned_cols=116  Identities=37%  Similarity=0.597  Sum_probs=102.4

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      ++.|+|++|.+.|.+|..++.+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..+..+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCccCCCCCCc--cCCCCcccccCCccccCCCCCCCC
Q 035751           82 NRLWGRIPRGNQ--FNTFENDSYIGNIHLCGEPLTVTC  117 (195)
Q Consensus        82 N~l~g~~p~~~~--~~~~~~~~~~~n~~l~~~~~~~~c  117 (195)
                      |.++|.+|....  ...+..+.+.+|..+|+.|....|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C  537 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC  537 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence            999999997532  123345667888888887654445

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.77  E-value=1.8e-18  Score=156.98  Aligned_cols=112  Identities=44%  Similarity=0.695  Sum_probs=97.5

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..|..+++|+.|++++|.+++.+|..+..+++|+.++++
T Consensus       500 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  579 (968)
T PLN00113        500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS  579 (968)
T ss_pred             ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence            36778888888888888888888889999999999888888888889999999999999988889888888899999999


Q ss_pred             cCcCccCCCCCCccCCCCcccccCCccccCCC
Q 035751           81 YNRLWGRIPRGNQFNTFENDSYIGNIHLCGEP  112 (195)
Q Consensus        81 ~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~  112 (195)
                      +|+++|.+|....+..+....+.||+.+||.+
T Consensus       580 ~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        580 HNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             CCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            99999999988888888888888998888754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.56  E-value=9.2e-15  Score=132.94  Aligned_cols=106  Identities=37%  Similarity=0.577  Sum_probs=93.2

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.|++++|.+++.+|..+..+++|+.|+|++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|+++
T Consensus       476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  555 (968)
T PLN00113        476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS  555 (968)
T ss_pred             cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcCccCCCCCC-ccCCCCcccccCCc
Q 035751           81 YNRLWGRIPRGN-QFNTFENDSYIGNI  106 (195)
Q Consensus        81 ~N~l~g~~p~~~-~~~~~~~~~~~~n~  106 (195)
                      +|.++|.+|... .+..+..+.+.+|.
T Consensus       556 ~N~l~~~~p~~l~~l~~L~~l~ls~N~  582 (968)
T PLN00113        556 QNQLSGEIPKNLGNVESLVQVNISHNH  582 (968)
T ss_pred             CCcccccCChhHhcCcccCEEeccCCc
Confidence            999999998742 23345555555554

>PLN03150 hypothetical protein; Provisional

Probab=99.33  E-value=8.4e-12  Score=108.64  Aligned_cols=89  Identities=39%  Similarity=0.554  Sum_probs=80.8

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcC-CCccEEEc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSV-TTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l-~~L~~L~l   79 (195)
                      +|+.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++.+++|++|+|++|.++|.+|..+... ..+..+++
T Consensus       443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~  522 (623)
T PLN03150        443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF  522 (623)
T ss_pred             CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence            47899999999999999999999999999999999999999999999999999999999999999988763 46778999


Q ss_pred             ccCcCccCCC
Q 035751           80 SYNRLWGRIP   89 (195)
Q Consensus        80 ~~N~l~g~~p   89 (195)
                      .+|...+..|
T Consensus       523 ~~N~~lc~~p  532 (623)
T PLN03150        523 TDNAGLCGIP  532 (623)
T ss_pred             cCCccccCCC
Confidence            9998765444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.21  E-value=8e-12  Score=76.06  Aligned_cols=58  Identities=38%  Similarity=0.547  Sum_probs=32.2

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNK   59 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~   59 (195)
                      |++|++++|.++...+..|.++++|++|++++|.++...|..|..+++|++|++++|+
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            5555555555554444455555555555555555554444555555555555555554

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.17  E-value=2.2e-11  Score=89.33  Aligned_cols=103  Identities=28%  Similarity=0.477  Sum_probs=37.6

Q ss_pred             ccEEEecCCcCCCCcchhhc-CCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhh-hcCCCccEEEc
Q 035751            2 FRATDLSSNRFCGEIPKVLG-NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQL-LSVTTLALLNL   79 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~l~~L~~L~l   79 (195)
                      +++|+|++|.|+ .+. .++ .+.+|+.|||++|.|+ .++ .+..++.|++|++++|.|+ .+...+ ..+++|+.|++
T Consensus        21 ~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   21 LRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-
T ss_pred             cccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEEC
Confidence            678999999998 343 465 5889999999999999 444 5788999999999999999 455445 46899999999


Q ss_pred             ccCcCccCCCCCCccCCCCcccccCCccccCCCC
Q 035751           80 SYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPL  113 (195)
Q Consensus        80 ~~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~  113 (195)
                      ++|++.. +.+   +..+..+..+....++|||.
T Consensus        96 ~~N~I~~-l~~---l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   96 SNNKISD-LNE---LEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             TTS---S-CCC---CGGGGG-TT--EEE-TT-GG
T ss_pred             cCCcCCC-hHH---hHHHHcCCCcceeeccCCcc
Confidence            9999972 222   33344444444456666665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.17  E-value=1.5e-11  Score=74.88  Aligned_cols=61  Identities=43%  Similarity=0.555  Sum_probs=56.0

Q ss_pred             CCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcC
Q 035751           24 KSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRL   84 (195)
Q Consensus        24 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l   84 (195)
                      ++|++|++++|.++...+..|..+++|++|++++|.++...|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999999967668899999999999999999977778999999999999999975

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.16  E-value=1.9e-12  Score=93.50  Aligned_cols=80  Identities=33%  Similarity=0.589  Sum_probs=48.9

Q ss_pred             cEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccC
Q 035751            3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYN   82 (195)
Q Consensus         3 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N   82 (195)
                      +.|-||+|.++ .+|+.+..|.+|+.|++.+|++. .+|.+++.++.|+.|+++-|++. ..|..|+.++.|+.||+.+|
T Consensus        36 TrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltyn  112 (264)
T KOG0617|consen   36 TRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYN  112 (264)
T ss_pred             hhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcccc
Confidence            34556666666 55555666666666666666666 55666666666666666666665 55666666666666666665


Q ss_pred             cCc
Q 035751           83 RLW   85 (195)
Q Consensus        83 ~l~   85 (195)
                      ++.
T Consensus       113 nl~  115 (264)
T KOG0617|consen  113 NLN  115 (264)
T ss_pred             ccc
Confidence            554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.13  E-value=2.6e-12  Score=107.56  Aligned_cols=90  Identities=28%  Similarity=0.247  Sum_probs=65.1

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.|+||+|.|..+.++.+...++|++|||++|+|+...+..|..|..|+.|+|++|++...-...|..+++|+.|||+
T Consensus       294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr  373 (873)
T KOG4194|consen  294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR  373 (873)
T ss_pred             hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence            35667777777777777777777777777777777776666667777777777777777765555667777777777777


Q ss_pred             cCcCccCCCC
Q 035751           81 YNRLWGRIPR   90 (195)
Q Consensus        81 ~N~l~g~~p~   90 (195)
                      +|.+++.|.+
T Consensus       374 ~N~ls~~IED  383 (873)
T KOG4194|consen  374 SNELSWCIED  383 (873)
T ss_pred             CCeEEEEEec
Confidence            7777766654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.11  E-value=5.3e-12  Score=91.21  Aligned_cols=103  Identities=29%  Similarity=0.441  Sum_probs=87.6

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCC-CCchhhhcCCCccEEEc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG-RIPKQLLSVTTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~l   79 (195)
                      +|+.|++++|+|. .+|..++.|++|+.|+++.|++. .+|..|+.++.|+.||+..|++.. .+|..|..+..|+.|++
T Consensus        57 nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl  134 (264)
T KOG0617|consen   57 NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL  134 (264)
T ss_pred             hhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence            5788999999999 88999999999999999999999 899999999999999999999864 48999999999999999


Q ss_pred             ccCcCccCCCCCCccCCCCcccccCC
Q 035751           80 SYNRLWGRIPRGNQFNTFENDSYIGN  105 (195)
Q Consensus        80 ~~N~l~g~~p~~~~~~~~~~~~~~~n  105 (195)
                      ++|.+.-..|+...+..++.+....|
T Consensus       135 ~dndfe~lp~dvg~lt~lqil~lrdn  160 (264)
T KOG0617|consen  135 GDNDFEILPPDVGKLTNLQILSLRDN  160 (264)
T ss_pred             cCCCcccCChhhhhhcceeEEeeccC
Confidence            99999844444455555555544444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.06  E-value=1.3e-11  Score=103.54  Aligned_cols=89  Identities=33%  Similarity=0.375  Sum_probs=63.6

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCch---hhhcCCCccEE
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK---QLLSVTTLALL   77 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~---~~~~l~~L~~L   77 (195)
                      +|++|||++|+|+...+++|..|..|++|+|++|+++...-..|..+.+|+.|||++|.+++.+.+   .|..+++|+.|
T Consensus       318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence            477888888888877778888888888888888887766666677777777777777777665543   35556666677


Q ss_pred             EcccCcCccCCCC
Q 035751           78 NLSYNRLWGRIPR   90 (195)
Q Consensus        78 ~l~~N~l~g~~p~   90 (195)
                      ++.+|++. .||.
T Consensus       398 ~l~gNqlk-~I~k  409 (873)
T KOG4194|consen  398 RLTGNQLK-SIPK  409 (873)
T ss_pred             eecCceee-ecch
Confidence            77776665 4443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.97  E-value=6.8e-10  Score=81.54  Aligned_cols=82  Identities=30%  Similarity=0.387  Sum_probs=40.6

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCcccc-CCCCCCcEEeCCCCcCCCC-CchhhhcCCCccEEE
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSF-DNMTALESLDLSFNKLEGR-IPKQLLSVTTLALLN   78 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~   78 (195)
                      +|+.|||++|.|+. ++ .+..++.|++|++++|+|+ .++..+ ..+++|+.|++++|+|... .-..+..+++|+.|+
T Consensus        43 ~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~  119 (175)
T PF14580_consen   43 KLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS  119 (175)
T ss_dssp             T--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred             CCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence            47899999999994 43 4888999999999999999 454444 4689999999999999743 224677899999999


Q ss_pred             cccCcCc
Q 035751           79 LSYNRLW   85 (195)
Q Consensus        79 l~~N~l~   85 (195)
                      +.+|+++
T Consensus       120 L~~NPv~  126 (175)
T PF14580_consen  120 LEGNPVC  126 (175)
T ss_dssp             -TT-GGG
T ss_pred             ccCCccc
Confidence            9999997

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.89  E-value=7.6e-10  Score=89.05  Aligned_cols=78  Identities=28%  Similarity=0.281  Sum_probs=57.7

Q ss_pred             CCCCcc-hhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcCccCCC
Q 035751           12 FCGEIP-KVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIP   89 (195)
Q Consensus        12 l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p   89 (195)
                      ..++.| ..|..|++|++|+|++|.+++.-+.+|..+..++.|.|..|+|.......|.++..|++|+|.+|+|+..-|
T Consensus       261 ~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~  339 (498)
T KOG4237|consen  261 PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP  339 (498)
T ss_pred             cCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence            333444 447778888888888888887777778888888888888888875556677778888888888888875444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.88  E-value=1.4e-09  Score=87.54  Aligned_cols=85  Identities=24%  Similarity=0.256  Sum_probs=80.5

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.|+|++|.|+++-+.+|.++..+++|.|..|+|...-...|.++..|++|+|.+|+|+...|..|..+.+|..|++-
T Consensus       275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~  354 (498)
T KOG4237|consen  275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL  354 (498)
T ss_pred             cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence            48899999999999999999999999999999999987777889999999999999999998899999999999999999


Q ss_pred             cCcCc
Q 035751           81 YNRLW   85 (195)
Q Consensus        81 ~N~l~   85 (195)
                      .|++.
T Consensus       355 ~Np~~  359 (498)
T KOG4237|consen  355 SNPFN  359 (498)
T ss_pred             cCccc
Confidence            99885

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.86  E-value=4.9e-10  Score=90.47  Aligned_cols=102  Identities=27%  Similarity=0.366  Sum_probs=52.9

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |..|+|++|-+. .+|.+++.+..|++||++.|+|. .+|.....+..|+.+-.++|++....|+.+..+.+|.+||+.+
T Consensus       437 Lt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n  514 (565)
T KOG0472|consen  437 LTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN  514 (565)
T ss_pred             ceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence            344555555554 45555555555555555555554 4444444444444444444444433344466677777778877


Q ss_pred             CcCccCCCCCCccCCCCcccccCC
Q 035751           82 NRLWGRIPRGNQFNTFENDSYIGN  105 (195)
Q Consensus        82 N~l~g~~p~~~~~~~~~~~~~~~n  105 (195)
                      |.+....|....+.++.++...||
T Consensus       515 Ndlq~IPp~LgnmtnL~hLeL~gN  538 (565)
T KOG0472|consen  515 NDLQQIPPILGNMTNLRHLELDGN  538 (565)
T ss_pred             CchhhCChhhccccceeEEEecCC
Confidence            777733333334444444444433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.86  E-value=1.8e-10  Score=92.92  Aligned_cols=84  Identities=24%  Similarity=0.307  Sum_probs=55.9

Q ss_pred             hcCCCCCcEEEccCCCCCCCCcccc-CCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcCccCCCCCCccCCCC
Q 035751           20 LGNFKSLKVLNLSHNSLTGNIPVSF-DNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFE   98 (195)
Q Consensus        20 ~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~   98 (195)
                      |+++..|.+|+++.|.|. .+|... .++++|..||+..|+++ +.|+.+.-+.+|..||+++|.+++..+....+ .+.
T Consensus       224 f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~  300 (565)
T KOG0472|consen  224 FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLK  300 (565)
T ss_pred             CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eee
Confidence            444444444444444444 344443 37888899999999998 88999999999999999999998655544333 444


Q ss_pred             cccccCCc
Q 035751           99 NDSYIGNI  106 (195)
Q Consensus        99 ~~~~~~n~  106 (195)
                      .+...|||
T Consensus       301 ~L~leGNP  308 (565)
T KOG0472|consen  301 FLALEGNP  308 (565)
T ss_pred             ehhhcCCc
Confidence            44445554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.84  E-value=5e-10  Score=98.07  Aligned_cols=104  Identities=29%  Similarity=0.372  Sum_probs=76.2

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      .|+.|+|++|++.......+.++..|+.|+||+|+++ .+|..+..++.|++|...+|++. .+| .+..++.|+.+|++
T Consensus       384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS  460 (1081)
T KOG0618|consen  384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLS  460 (1081)
T ss_pred             ceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecc
Confidence            3678888888887333355677888888888888888 77788888888888888888887 677 77888899999999


Q ss_pred             cCcCcc-CCCCCCccCCCCcccccCCcc
Q 035751           81 YNRLWG-RIPRGNQFNTFENDSYIGNIH  107 (195)
Q Consensus        81 ~N~l~g-~~p~~~~~~~~~~~~~~~n~~  107 (195)
                      .|.++- .+|....-..++.+.+.||..
T Consensus       461 ~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  461 CNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             cchhhhhhhhhhCCCcccceeeccCCcc
Confidence            998872 333332224566666666664

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.81  E-value=9.9e-10  Score=93.32  Aligned_cols=82  Identities=40%  Similarity=0.427  Sum_probs=67.6

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |+.||||+|.+. .+|..+..-+++-.|+||+|+|..+..+-|.+|+.|-+||||+|++. .+|..+..+..|++|+|++
T Consensus       105 Lt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~  182 (1255)
T KOG0444|consen  105 LTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSN  182 (1255)
T ss_pred             ceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCC
Confidence            677888888888 78888888888888888888888443345778888888899999887 7788888888888899988


Q ss_pred             CcCc
Q 035751           82 NRLW   85 (195)
Q Consensus        82 N~l~   85 (195)
                      |++.
T Consensus       183 NPL~  186 (1255)
T KOG0444|consen  183 NPLN  186 (1255)
T ss_pred             Chhh
Confidence            8874

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.71  E-value=3e-09  Score=83.30  Aligned_cols=80  Identities=26%  Similarity=0.308  Sum_probs=62.7

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |++||||+|.|+ .+.++..-++.++.|++|+|.|. .+. .++.+++|+.||||+|.++ .+.+.-..+-+.++|.|+.
T Consensus       286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence            678999999998 77888888899999999999998 333 3888999999999999887 4444445566666666666


Q ss_pred             CcCc
Q 035751           82 NRLW   85 (195)
Q Consensus        82 N~l~   85 (195)
                      |.+.
T Consensus       362 N~iE  365 (490)
T KOG1259|consen  362 NKIE  365 (490)
T ss_pred             hhHh
Confidence            6654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.69  E-value=3.2e-09  Score=90.34  Aligned_cols=102  Identities=29%  Similarity=0.465  Sum_probs=70.5

Q ss_pred             ccEEEecCCcCC-CCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchh-hhcCCCccEEEc
Q 035751            2 FRATDLSSNRFC-GEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQ-LLSVTTLALLNL   79 (195)
Q Consensus         2 L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~l~~L~~L~l   79 (195)
                      |+.+++.+|++. .-+|..+..|..|+.||||+|++. ..|..+..-.++..|+||+|+|. .+|.. +.++..|-+|||
T Consensus        80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDL  157 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDL  157 (1255)
T ss_pred             hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhcc
Confidence            455666666664 246777778888888888888888 77888888888888888888887 55654 457788888888


Q ss_pred             ccCcCccCCCCCCccCCCCcccccCC
Q 035751           80 SYNRLWGRIPRGNQFNTFENDSYIGN  105 (195)
Q Consensus        80 ~~N~l~g~~p~~~~~~~~~~~~~~~n  105 (195)
                      ++|++....|..-.+..++.+.+.+|
T Consensus       158 S~NrLe~LPPQ~RRL~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  158 SNNRLEMLPPQIRRLSMLQTLKLSNN  183 (1255)
T ss_pred             ccchhhhcCHHHHHHhhhhhhhcCCC
Confidence            88888754444333333444444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.64  E-value=3e-09  Score=74.23  Aligned_cols=86  Identities=30%  Similarity=0.470  Sum_probs=53.9

Q ss_pred             ccEEEecCCcCCCCcchhhcC-CCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            2 FRATDLSSNRFCGEIPKVLGN-FKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      |+..+|++|.+. .+|+.|.. ++.+++|+|++|.|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+..
T Consensus        55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            345566677666 44544443 346666777777776 56666777777777777777766 556666666666666666


Q ss_pred             cCcCccCCCCC
Q 035751           81 YNRLWGRIPRG   91 (195)
Q Consensus        81 ~N~l~g~~p~~   91 (195)
                      +|.+. ++|..
T Consensus       132 ~na~~-eid~d  141 (177)
T KOG4579|consen  132 ENARA-EIDVD  141 (177)
T ss_pred             CCccc-cCcHH
Confidence            66665 55543

>PLN03210 Resistant to P

Probab=98.63  E-value=1.6e-07  Score=87.42  Aligned_cols=103  Identities=17%  Similarity=0.195  Sum_probs=77.1

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.|+|++|.+. .++..+..+++|+.|+|+++.....+|. +..+++|++|++++|.....+|..+..+++|+.|+++
T Consensus       612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            4677888888887 5677778888888899887764446664 7788889999998876656788888888999999998


Q ss_pred             cCcCccCCCCCCccCCCCcccccCC
Q 035751           81 YNRLWGRIPRGNQFNTFENDSYIGN  105 (195)
Q Consensus        81 ~N~l~g~~p~~~~~~~~~~~~~~~n  105 (195)
                      +|...+.+|....+..+..+.+.++
T Consensus       690 ~c~~L~~Lp~~i~l~sL~~L~Lsgc  714 (1153)
T PLN03210        690 RCENLEILPTGINLKSLYRLNLSGC  714 (1153)
T ss_pred             CCCCcCccCCcCCCCCCCEEeCCCC
Confidence            8655557776655555555555444

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.59  E-value=5.5e-08  Score=86.11  Aligned_cols=39  Identities=33%  Similarity=0.416  Sum_probs=19.4

Q ss_pred             CcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcCccCCC
Q 035751           50 LESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIP   89 (195)
Q Consensus        50 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p   89 (195)
                      |+.|++++|+|+ .+|..+..+++|+.|++++|++++.+|
T Consensus       424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence            344444444444 345555555555555555555554433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.57  E-value=4.4e-09  Score=92.34  Aligned_cols=94  Identities=32%  Similarity=0.395  Sum_probs=81.3

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |+.|.+.+|.++...-+.+.++.+|+.|+|++|+++......+.++..|+.|+||+|.++ .+|..+..+..|++|...+
T Consensus       361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahs  439 (1081)
T KOG0618|consen  361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHS  439 (1081)
T ss_pred             HHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcC
Confidence            567889999999888888999999999999999999444455889999999999999999 8899999999999999999


Q ss_pred             CcCccCCCCCCccCCC
Q 035751           82 NRLWGRIPRGNQFNTF   97 (195)
Q Consensus        82 N~l~g~~p~~~~~~~~   97 (195)
                      |.+. ..|...++..+
T Consensus       440 N~l~-~fPe~~~l~qL  454 (1081)
T KOG0618|consen  440 NQLL-SFPELAQLPQL  454 (1081)
T ss_pred             Ccee-echhhhhcCcc
Confidence            9998 77765444333

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.51  E-value=1.3e-08  Score=85.52  Aligned_cols=84  Identities=27%  Similarity=0.529  Sum_probs=58.2

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |+.|-+++|+++ .+|+.++.+..|..||.+.|.+. .+|..++.+.+|+.|.+..|.+. .+|..+..+ .|..||++.
T Consensus       145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfSc  220 (722)
T KOG0532|consen  145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSC  220 (722)
T ss_pred             ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeeccc
Confidence            566777788877 77777777778888888888877 66777777777766666666665 455555533 366677777


Q ss_pred             CcCccCCCC
Q 035751           82 NRLWGRIPR   90 (195)
Q Consensus        82 N~l~g~~p~   90 (195)
                      |+++ .+|.
T Consensus       221 Nkis-~iPv  228 (722)
T KOG0532|consen  221 NKIS-YLPV  228 (722)
T ss_pred             Ccee-ecch
Confidence            7776 5554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.47  E-value=2.5e-07  Score=52.20  Aligned_cols=35  Identities=37%  Similarity=0.655  Sum_probs=16.1

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCC
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLT   37 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~   37 (195)
                      |++|++++|+|+ .+|+.+++|++|+.|++++|.++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            445555555554 33444445555555555555444

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.46  E-value=6.5e-07  Score=79.47  Aligned_cols=77  Identities=31%  Similarity=0.454  Sum_probs=37.6

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCC-------------------CCCCcEEeCCCCcCCC
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDN-------------------MTALESLDLSFNKLEG   62 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-------------------l~~L~~L~l~~N~l~~   62 (195)
                      |+.|+|++|.|+ .+|..+.  .+|++|++++|.++ .+|..+..                   ..+|+.|++++|.++ 
T Consensus       201 L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~-  275 (754)
T PRK15370        201 ITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKIS-  275 (754)
T ss_pred             CcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhhccccEEECcCCccCcCChhHhCCCCEEECcCCccC-
Confidence            455666666666 3444332  35555555555555 33433221                   124555555555554 


Q ss_pred             CCchhhhcCCCccEEEcccCcCc
Q 035751           63 RIPKQLLSVTTLALLNLSYNRLW   85 (195)
Q Consensus        63 ~~p~~~~~l~~L~~L~l~~N~l~   85 (195)
                      .+|..+.  .+|+.|++++|.++
T Consensus       276 ~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        276 CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             ccccccC--CCCcEEECCCCccc
Confidence            3444332  34555555555555

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.46  E-value=2e-07  Score=52.64  Aligned_cols=36  Identities=39%  Similarity=0.663  Sum_probs=20.4

Q ss_pred             CCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCC
Q 035751           25 SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE   61 (195)
Q Consensus        25 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~   61 (195)
                      +|++|++++|.|+ .+|..++.|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4566666666666 44545566666666666666655

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.45  E-value=9.2e-09  Score=88.60  Aligned_cols=80  Identities=31%  Similarity=0.338  Sum_probs=60.8

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |+.|||++|++... . .+..|+.|+.|||++|.+. .+|..-..-..|+.|.+++|.++..  ..+.++.+|+.||+++
T Consensus       189 le~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~~LDlsy  263 (1096)
T KOG1859|consen  189 LESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKSLYGLDLSY  263 (1096)
T ss_pred             hhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhhhhhhccchhH
Confidence            56788999988843 3 6788899999999999988 5554322223488899999988732  4578899999999999


Q ss_pred             CcCcc
Q 035751           82 NRLWG   86 (195)
Q Consensus        82 N~l~g   86 (195)
                      |-+.+
T Consensus       264 Nll~~  268 (1096)
T KOG1859|consen  264 NLLSE  268 (1096)
T ss_pred             hhhhc
Confidence            98873

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.44  E-value=3.8e-08  Score=77.18  Aligned_cols=79  Identities=29%  Similarity=0.325  Sum_probs=67.3

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      ++.|++|+|.|. .+. .+..|.+|+.||||+|.++ .+-..-..+.++++|.|+.|.|..  -+.+..+-+|..||+.+
T Consensus       309 ir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~  383 (490)
T KOG1259|consen  309 LRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSS  383 (490)
T ss_pred             eeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccc
Confidence            678999999998 443 3889999999999999998 666666778999999999999862  35678889999999999


Q ss_pred             CcCc
Q 035751           82 NRLW   85 (195)
Q Consensus        82 N~l~   85 (195)
                      |+|.
T Consensus       384 N~Ie  387 (490)
T KOG1259|consen  384 NQIE  387 (490)
T ss_pred             cchh
Confidence            9996

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.42  E-value=3.5e-07  Score=81.15  Aligned_cols=33  Identities=36%  Similarity=0.339  Sum_probs=17.6

Q ss_pred             CCcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcCc
Q 035751           49 ALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLW   85 (195)
Q Consensus        49 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~   85 (195)
                      +|+.|++++|.|+ .+|..   .++|+.|++++|.++
T Consensus       383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls  415 (788)
T PRK15387        383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT  415 (788)
T ss_pred             ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC
Confidence            4556666666665 33432   234555666666555

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.41  E-value=5.7e-07  Score=79.81  Aligned_cols=79  Identities=29%  Similarity=0.490  Sum_probs=58.4

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |+.|+|++|.+. .+|..+.  .+|+.|++++|.++ .+|..+.  ++|+.|++++|.++ .+|..+.  ++|+.|++++
T Consensus       243 L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~  313 (754)
T PRK15370        243 IQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQS  313 (754)
T ss_pred             ccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcC
Confidence            455666666665 4555443  47899999999998 5676654  58999999999999 5666543  5789999999


Q ss_pred             CcCccCCCC
Q 035751           82 NRLWGRIPR   90 (195)
Q Consensus        82 N~l~g~~p~   90 (195)
                      |.++ .+|.
T Consensus       314 N~Lt-~LP~  321 (754)
T PRK15370        314 NSLT-ALPE  321 (754)
T ss_pred             Cccc-cCCc
Confidence            9998 4553

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.37  E-value=2.1e-07  Score=74.42  Aligned_cols=84  Identities=24%  Similarity=0.340  Sum_probs=56.9

Q ss_pred             ccEEEecCCcCCC----CcchhhcCC-CCCcEEEccCCCCCCC----CccccCCCCCCcEEeCCCCcCCCC----Cchhh
Q 035751            2 FRATDLSSNRFCG----EIPKVLGNF-KSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGR----IPKQL   68 (195)
Q Consensus         2 L~~L~Ls~N~l~~----~~p~~~~~l-~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~   68 (195)
                      |++|++++|.+++    .+...+..+ ++|+.|++++|.+++.    ++..+..++.|++|++++|.+++.    ++..+
T Consensus       110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l  189 (319)
T cd00116         110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL  189 (319)
T ss_pred             ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence            7788888888773    233445566 7888888888887742    233456667788888888887742    23334


Q ss_pred             hcCCCccEEEcccCcCc
Q 035751           69 LSVTTLALLNLSYNRLW   85 (195)
Q Consensus        69 ~~l~~L~~L~l~~N~l~   85 (195)
                      ..+++|+.|++++|.++
T Consensus       190 ~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         190 KANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HhCCCCCEEeccCCccC
Confidence            45567888888888775

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=98.33  E-value=2.1e-06  Score=80.10  Aligned_cols=79  Identities=25%  Similarity=0.338  Sum_probs=53.8

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCC---------------------Cc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSF---------------------NK   59 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~---------------------N~   59 (195)
                      +|+.|+|++|...+.+|..++++++|+.|++++|..-+.+|..+ .+++|+.|++++                     |.
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~  857 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG  857 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCC
Confidence            47788999988777899999999999999999875333666544 455555555554                     44


Q ss_pred             CCCCCchhhhcCCCccEEEccc
Q 035751           60 LEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus        60 l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      ++ .+|..+..+++|+.|++++
T Consensus       858 i~-~iP~si~~l~~L~~L~L~~  878 (1153)
T PLN03210        858 IE-EVPWWIEKFSNLSFLDMNG  878 (1153)
T ss_pred             Cc-cChHHHhcCCCCCEEECCC
Confidence            44 4555555566666666655

syringae 6; Provisional

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.28  E-value=4e-07  Score=75.25  Aligned_cols=85  Identities=38%  Similarity=0.655  Sum_probs=53.8

Q ss_pred             ccEEEecCCcCCCCcchhhcCCC-CCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFK-SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      ++.|++.+|.++ .+|.....+. +|+.|+++.|.+. .+|..+..+++|+.|++++|+++ .+|......+.|+.|+++
T Consensus       118 l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls  194 (394)
T COG4886         118 LTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLS  194 (394)
T ss_pred             eeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheecc
Confidence            456667777766 4555455553 6777777777766 55555666777777777777776 555554466666677777


Q ss_pred             cCcCccCCCC
Q 035751           81 YNRLWGRIPR   90 (195)
Q Consensus        81 ~N~l~g~~p~   90 (195)
                      +|.++ .+|.
T Consensus       195 ~N~i~-~l~~  203 (394)
T COG4886         195 GNKIS-DLPP  203 (394)
T ss_pred             CCccc-cCch
Confidence            77666 4443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.25  E-value=4.1e-07  Score=72.70  Aligned_cols=86  Identities=31%  Similarity=0.366  Sum_probs=53.2

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCC---CcEEEccCCCCCC----CCccccCCC-CCCcEEeCCCCcCCCC----Cchhh
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKS---LKVLNLSHNSLTG----NIPVSFDNM-TALESLDLSFNKLEGR----IPKQL   68 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~Ls~N~l~~----~~p~~~~~l-~~L~~L~l~~N~l~~~----~p~~~   68 (195)
                      +|+.|++++|.+.+..+..+..+..   |+.|++++|.+++    .+...+..+ ++|+.|++++|.+++.    ++..+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            3567777777776555555555554   7777777777662    222334455 6777777777777632    23344


Q ss_pred             hcCCCccEEEcccCcCcc
Q 035751           69 LSVTTLALLNLSYNRLWG   86 (195)
Q Consensus        69 ~~l~~L~~L~l~~N~l~g   86 (195)
                      ..+..|+.|++++|.+++
T Consensus       162 ~~~~~L~~L~l~~n~l~~  179 (319)
T cd00116         162 RANRDLKELNLANNGIGD  179 (319)
T ss_pred             HhCCCcCEEECcCCCCch
Confidence            555677777777777763

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.15  E-value=7.9e-07  Score=73.50  Aligned_cols=82  Identities=35%  Similarity=0.556  Sum_probs=70.0

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.|++++|.+. .+|..+..+++|+.|+++.|.++ .+|...+.++.|+.|++++|+++ .+|........|..+.++
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS  217 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence            4788999999998 67677899999999999999999 77776668899999999999998 778776667779999999


Q ss_pred             cCcCc
Q 035751           81 YNRLW   85 (195)
Q Consensus        81 ~N~l~   85 (195)
                      +|.+.
T Consensus       218 ~N~~~  222 (394)
T COG4886         218 NNSII  222 (394)
T ss_pred             CCcce
Confidence            99543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.10  E-value=2.2e-06  Score=77.41  Aligned_cols=86  Identities=28%  Similarity=0.342  Sum_probs=63.8

Q ss_pred             ccEEEecCCc--CCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751            2 FRATDLSSNR--FCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL   79 (195)
Q Consensus         2 L~~L~Ls~N~--l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l   79 (195)
                      |++|-+..|.  +....++.|..++.|+.|||++|.=-+.+|..++.|-+|++|++++..++ .+|..+.++..|.+||+
T Consensus       547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl  625 (889)
T KOG4658|consen  547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNL  625 (889)
T ss_pred             cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecc
Confidence            5667777775  44344455777888888888887655588888888888888888888887 77888888888888888


Q ss_pred             ccCcCccCC
Q 035751           80 SYNRLWGRI   88 (195)
Q Consensus        80 ~~N~l~g~~   88 (195)
                      ..+.-...+
T Consensus       626 ~~~~~l~~~  634 (889)
T KOG4658|consen  626 EVTGRLESI  634 (889)
T ss_pred             ccccccccc
Confidence            776544333

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.00  E-value=7.4e-06  Score=60.89  Aligned_cols=81  Identities=26%  Similarity=0.194  Sum_probs=47.7

Q ss_pred             cEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCC-CchhhhcCCCccEEEccc
Q 035751            3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR-IPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         3 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l~~   81 (195)
                      ..+||++|.+..  -+.|..++.|.+|.|++|+|+...|.--..+++|..|.+.+|.|... .-..+..+++|++|.+-+
T Consensus        45 d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   45 DAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             ceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            346666666652  22355666677777777777655555444556677777777766521 112345566667776666


Q ss_pred             CcCc
Q 035751           82 NRLW   85 (195)
Q Consensus        82 N~l~   85 (195)
                      |+.+
T Consensus       123 Npv~  126 (233)
T KOG1644|consen  123 NPVE  126 (233)
T ss_pred             Cchh
Confidence            6665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.97  E-value=5.1e-07  Score=63.24  Aligned_cols=86  Identities=24%  Similarity=0.338  Sum_probs=68.5

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      ++.|+|++|.|+ .+|.++..++.|+.|+++.|.+. ..|..+..|.+|..|+..+|.+. .+|-.+.--+.....++.+
T Consensus        79 ~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgn  155 (177)
T KOG4579|consen   79 ATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGN  155 (177)
T ss_pred             hhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcC
Confidence            567899999999 78999999999999999999999 77888888999999999999998 6666544333334445566


Q ss_pred             CcCccCCCC
Q 035751           82 NRLWGRIPR   90 (195)
Q Consensus        82 N~l~g~~p~   90 (195)
                      +++.+..+.
T Consensus       156 epl~~~~~~  164 (177)
T KOG4579|consen  156 EPLGDETKK  164 (177)
T ss_pred             CcccccCcc
Confidence            667655444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.96  E-value=1.6e-05  Score=59.12  Aligned_cols=99  Identities=21%  Similarity=0.287  Sum_probs=69.2

Q ss_pred             EEEecCCcCCCCcchhhc-CCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccC
Q 035751            4 ATDLSSNRFCGEIPKVLG-NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYN   82 (195)
Q Consensus         4 ~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N   82 (195)
                      .++|.+..+. .+-. ++ .+.+...+||+.|.+. .+ ..|..++.|.+|.+++|+|+..-|.--..+++|..|.+.+|
T Consensus        23 e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   23 ELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             cccccccccc-chhh-ccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            4666666655 2221 22 3467889999999987 33 46889999999999999999776765566788999999999


Q ss_pred             cCc--cCCCCCCccCCCCcccccCCc
Q 035751           83 RLW--GRIPRGNQFNTFENDSYIGNI  106 (195)
Q Consensus        83 ~l~--g~~p~~~~~~~~~~~~~~~n~  106 (195)
                      .|.  |.+.....+..+..+++.+|+
T Consensus        99 si~~l~dl~pLa~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   99 SIQELGDLDPLASCPKLEYLTLLGNP  124 (233)
T ss_pred             chhhhhhcchhccCCccceeeecCCc
Confidence            986  222222334455566666664

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.95  E-value=4.4e-06  Score=75.46  Aligned_cols=82  Identities=28%  Similarity=0.485  Sum_probs=72.7

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      .|+.|||++|.=-+.+|..++.|-+|++|+|++..+. .+|..+++|..|.+|++..+.-...+|.....+.+|++|.+-
T Consensus       572 ~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  572 LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP  650 (889)
T ss_pred             ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence            3789999998776799999999999999999999999 899999999999999999988665667777779999999886


Q ss_pred             cCc
Q 035751           81 YNR   83 (195)
Q Consensus        81 ~N~   83 (195)
                      .-.
T Consensus       651 ~s~  653 (889)
T KOG4658|consen  651 RSA  653 (889)
T ss_pred             ccc
Confidence            543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.93  E-value=1.2e-06  Score=73.85  Aligned_cols=84  Identities=31%  Similarity=0.485  Sum_probs=74.1

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |..||.+.|.+. .+|..++++.+|+.|.+..|.+. .+|..+..| .|..||++.|+++ .+|-.|.+|..|++|-|.+
T Consensus       168 l~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~Len  243 (722)
T KOG0532|consen  168 LAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLEN  243 (722)
T ss_pred             HHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeecc
Confidence            567899999998 78888999999999999999998 778888855 5899999999998 8899999999999999999


Q ss_pred             CcCccCCCC
Q 035751           82 NRLWGRIPR   90 (195)
Q Consensus        82 N~l~g~~p~   90 (195)
                      |++. ..|.
T Consensus       244 NPLq-SPPA  251 (722)
T KOG0532|consen  244 NPLQ-SPPA  251 (722)
T ss_pred             CCCC-CChH
Confidence            9997 4443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.84  E-value=5.4e-06  Score=69.21  Aligned_cols=80  Identities=38%  Similarity=0.502  Sum_probs=50.5

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|..|++.+|.|.+ +...+..+.+|+.|++++|.|+...  .+..++.|+.|++++|.|+. + ..+..+..|+.++++
T Consensus        96 ~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   96 SLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDLS  170 (414)
T ss_pred             ceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheeccCcchh-c-cCCccchhhhcccCC
Confidence            35667777777773 3333556777777777777776332  34556667777777777762 2 234446667777777


Q ss_pred             cCcCc
Q 035751           81 YNRLW   85 (195)
Q Consensus        81 ~N~l~   85 (195)
                      +|.+.
T Consensus       171 ~n~i~  175 (414)
T KOG0531|consen  171 YNRIV  175 (414)
T ss_pred             cchhh
Confidence            77766

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=6.7e-06  Score=67.44  Aligned_cols=84  Identities=21%  Similarity=0.256  Sum_probs=58.1

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCc--cccCCCCCCcEEeCCCCcCCCC-Cchh-----hhcCC
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIP--VSFDNMTALESLDLSFNKLEGR-IPKQ-----LLSVT   72 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~l~~N~l~~~-~p~~-----~~~l~   72 (195)
                      +|..|+|.+|..-........-+..|++|||++|.+- ..+  ...+.++.|+.|+++.+.+... +|+.     ...++
T Consensus       223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~  301 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP  301 (505)
T ss_pred             cHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence            3566777777433344444556778888888888865 333  4567788888888888887643 3443     45678


Q ss_pred             CccEEEcccCcCc
Q 035751           73 TLALLNLSYNRLW   85 (195)
Q Consensus        73 ~L~~L~l~~N~l~   85 (195)
                      +|++|++..|++.
T Consensus       302 kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  302 KLEYLNISENNIR  314 (505)
T ss_pred             cceeeecccCccc
Confidence            8999999999886

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.81  E-value=7.5e-07  Score=77.16  Aligned_cols=80  Identities=34%  Similarity=0.454  Sum_probs=65.7

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |.+.+.+.|.+. ....++.-++.|+.|||++|+++..  +.+..++.|++|||+.|.++ .+|..-..-..|..|++.+
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence            455678889988 7788888899999999999999844  37899999999999999998 5665322223499999999


Q ss_pred             CcCc
Q 035751           82 NRLW   85 (195)
Q Consensus        82 N~l~   85 (195)
                      |.++
T Consensus       242 N~l~  245 (1096)
T KOG1859|consen  242 NALT  245 (1096)
T ss_pred             cHHH
Confidence            9987

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.78  E-value=1e-05  Score=67.51  Aligned_cols=80  Identities=34%  Similarity=0.429  Sum_probs=64.1

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      ++.+++..|.+.. +-..+..+.+|+.|++..|.|. .+...+..+++|++|++++|.|+..  ..+..++.|+.|++++
T Consensus        74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSG  149 (414)
T ss_pred             HHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheecc
Confidence            3456677787773 4445788999999999999998 4444478899999999999999854  3466778899999999


Q ss_pred             CcCc
Q 035751           82 NRLW   85 (195)
Q Consensus        82 N~l~   85 (195)
                      |.++
T Consensus       150 N~i~  153 (414)
T KOG0531|consen  150 NLIS  153 (414)
T ss_pred             Ccch
Confidence            9998

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.26  E-value=0.00018  Score=55.50  Aligned_cols=64  Identities=28%  Similarity=0.345  Sum_probs=30.4

Q ss_pred             hcCCCCCcEEEccCC--CCCCCCccccCCCCCCcEEeCCCCcCCCCCchh---hhcCCCccEEEcccCcCc
Q 035751           20 LGNFKSLKVLNLSHN--SLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQ---LLSVTTLALLNLSYNRLW   85 (195)
Q Consensus        20 ~~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~---~~~l~~L~~L~l~~N~l~   85 (195)
                      |..|++|++|+++.|  ++.+.++.....+++|++|++++|+|+-  ++.   +..+.+|..|++.+|..+
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence            334555555555555  4444444444444555555555555541  221   223444445555554443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.00017  Score=59.36  Aligned_cols=84  Identities=25%  Similarity=0.339  Sum_probs=65.3

Q ss_pred             CccEEEecCCcCCCCcc--hhhcCCCCCcEEEccCCCCCCC-Cccc-----cCCCCCCcEEeCCCCcCCCCCc--hhhhc
Q 035751            1 MFRATDLSSNRFCGEIP--KVLGNFKSLKVLNLSHNSLTGN-IPVS-----FDNMTALESLDLSFNKLEGRIP--KQLLS   70 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~-~p~~-----~~~l~~L~~L~l~~N~l~~~~p--~~~~~   70 (195)
                      .|++|||++|++- ..+  ...+.++.|..|+++.+.+... .|+.     ...+++|++|+++.|++. ..+  ..+..
T Consensus       247 ~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~  324 (505)
T KOG3207|consen  247 TLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRT  324 (505)
T ss_pred             HHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhc
Confidence            3789999999887 344  5578899999999999998743 2332     356899999999999996 333  35677


Q ss_pred             CCCccEEEcccCcCcc
Q 035751           71 VTTLALLNLSYNRLWG   86 (195)
Q Consensus        71 l~~L~~L~l~~N~l~g   86 (195)
                      +.+|+.|.+..|.++.
T Consensus       325 l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  325 LENLKHLRITLNYLNK  340 (505)
T ss_pred             cchhhhhhcccccccc
Confidence            8889999999999873

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.00017  Score=56.92  Aligned_cols=84  Identities=29%  Similarity=0.290  Sum_probs=59.3

Q ss_pred             ccEEEecCCcCCC--CcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCC-CchhhhcCCCccEEE
Q 035751            2 FRATDLSSNRFCG--EIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR-IPKQLLSVTTLALLN   78 (195)
Q Consensus         2 L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~   78 (195)
                      ++.|||.+|.|+.  .+..-+.+|+.|++|+|+.|.+...+...-..+.+|++|-|.+..+.-. ....+..++.++.|.
T Consensus        73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH  152 (418)
T KOG2982|consen   73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH  152 (418)
T ss_pred             hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence            4578899998884  3444567889999999999998744433224667888888888776532 333455677888888


Q ss_pred             cccCcCc
Q 035751           79 LSYNRLW   85 (195)
Q Consensus        79 l~~N~l~   85 (195)
                      ++.|.+.
T Consensus       153 mS~N~~r  159 (418)
T KOG2982|consen  153 MSDNSLR  159 (418)
T ss_pred             hccchhh
Confidence            8888554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.14  E-value=0.00022  Score=33.74  Aligned_cols=21  Identities=33%  Similarity=0.488  Sum_probs=13.7

Q ss_pred             CccEEEecCCcCCCCcchhhcC
Q 035751            1 MFRATDLSSNRFCGEIPKVLGN   22 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~   22 (195)
                      +|++|||++|+|+ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4677777777777 56655544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.60  E-value=0.0006  Score=32.21  Aligned_cols=18  Identities=61%  Similarity=0.870  Sum_probs=8.7

Q ss_pred             CcEEEccCCCCCCCCcccc
Q 035751           26 LKVLNLSHNSLTGNIPVSF   44 (195)
Q Consensus        26 L~~L~Ls~N~l~~~~p~~~   44 (195)
                      |++|||++|.++ .+|+.|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            445555555555 444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.41  E-value=0.0028  Score=56.35  Aligned_cols=81  Identities=19%  Similarity=0.387  Sum_probs=39.1

Q ss_pred             ccEEEecCCcCCC-CcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCC-CCchhhhcCCCccEEEc
Q 035751            2 FRATDLSSNRFCG-EIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG-RIPKQLLSVTTLALLNL   79 (195)
Q Consensus         2 L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~l   79 (195)
                      |+.|.+++-.+.. ..-.-..++++|..||+|+.+++ .+ ..++.|.+|+.|.+.+=.+.. ..-..+.++++|+.||+
T Consensus       150 L~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDI  227 (699)
T KOG3665|consen  150 LRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDI  227 (699)
T ss_pred             cceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeec
Confidence            5555555544431 12233345566666666666665 22 345555555555555433331 11123445555555555


Q ss_pred             ccCcC
Q 035751           80 SYNRL   84 (195)
Q Consensus        80 ~~N~l   84 (195)
                      |....
T Consensus       228 S~~~~  232 (699)
T KOG3665|consen  228 SRDKN  232 (699)
T ss_pred             ccccc
Confidence            54433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.41  E-value=0.0026  Score=49.18  Aligned_cols=68  Identities=26%  Similarity=0.410  Sum_probs=51.9

Q ss_pred             cchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCC--cCCCCCchhhhcCCCccEEEcccCcCc
Q 035751           16 IPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFN--KLEGRIPKQLLSVTTLALLNLSYNRLW   85 (195)
Q Consensus        16 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N--~l~~~~p~~~~~l~~L~~L~l~~N~l~   85 (195)
                      +..-...+..|+.|.+.+-.++ .. ..|..|++|+.|.++.|  .+.+.++-....+++|+++++++|++.
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            4444455667777777777776 22 45778999999999999  666666666667799999999999997

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.36  E-value=0.00098  Score=53.55  Aligned_cols=85  Identities=24%  Similarity=0.301  Sum_probs=62.1

Q ss_pred             CccEEEecCCcCCC----CcchhhcCCCCCcEEEccCCCCCCC----CccccCCCCCCcEEeCCCCcCCCCCchhhh---
Q 035751            1 MFRATDLSSNRFCG----EIPKVLGNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGRIPKQLL---   69 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~---   69 (195)
                      +|+.+.++.|.|..    .+...|..+++|+.|||..|.++..    +...+..+++|+.|+++++.+...-...+.   
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al  265 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL  265 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence            46778888887762    2334577889999999999998732    334567788899999999888754333322   


Q ss_pred             --cCCCccEEEcccCcCc
Q 035751           70 --SVTTLALLNLSYNRLW   85 (195)
Q Consensus        70 --~l~~L~~L~l~~N~l~   85 (195)
                        ..++|+.+.+.+|.++
T Consensus       266 ~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEIT  283 (382)
T ss_pred             hccCCCCceeccCcchhH
Confidence              3678999999999886

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.23  E-value=0.0029  Score=50.90  Aligned_cols=85  Identities=25%  Similarity=0.266  Sum_probs=65.3

Q ss_pred             CccEEEecCCcCCCC----cchhhcCCCCCcEEEccCCCCCCC----CccccCCCCCCcEEeCCCCcCCCC----Cchhh
Q 035751            1 MFRATDLSSNRFCGE----IPKVLGNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGR----IPKQL   68 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~   68 (195)
                      .|+.++...|++...    +...|...+.|+.+.++.|.|...    +-..|..+++|+.|||..|.++..    +...+
T Consensus       158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL  237 (382)
T KOG1909|consen  158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL  237 (382)
T ss_pred             ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence            478888999988632    334467778999999999988622    234578899999999999999754    33456


Q ss_pred             hcCCCccEEEcccCcCc
Q 035751           69 LSVTTLALLNLSYNRLW   85 (195)
Q Consensus        69 ~~l~~L~~L~l~~N~l~   85 (195)
                      ..++.|+.|+++++.+.
T Consensus       238 ~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  238 SSWPHLRELNLGDCLLE  254 (382)
T ss_pred             cccchheeecccccccc
Confidence            67888999999999886

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.75  E-value=0.0076  Score=53.64  Aligned_cols=57  Identities=19%  Similarity=0.324  Sum_probs=28.6

Q ss_pred             CCCCcEEEccCCCCCC-CCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751           23 FKSLKVLNLSHNSLTG-NIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus        23 l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      ||+|+.|.+++-.+.. ..-....++|+|..||+|+.+++. + ..+..+.+|+.|.+.+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRN  204 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccC
Confidence            4566666655544431 112233445566666666655552 2 4455555555555544

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.70  E-value=0.00012  Score=55.92  Aligned_cols=80  Identities=20%  Similarity=0.190  Sum_probs=59.7

Q ss_pred             cEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccC
Q 035751            3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYN   82 (195)
Q Consensus         3 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N   82 (195)
                      +.||++.|++. .....|+-++.|..||++.|.+. ..|..++++..+..+++..|..+ ..|.++...+.++++++-.|
T Consensus        45 tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~  121 (326)
T KOG0473|consen   45 TVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKT  121 (326)
T ss_pred             eeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccC
Confidence            45777777766 45555666777777888888777 67777777777788888877777 67777778888888888777


Q ss_pred             cCc
Q 035751           83 RLW   85 (195)
Q Consensus        83 ~l~   85 (195)
                      .+.
T Consensus       122 ~~~  124 (326)
T KOG0473|consen  122 EFF  124 (326)
T ss_pred             cch
Confidence            764

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.65  E-value=0.00097  Score=52.33  Aligned_cols=81  Identities=22%  Similarity=0.183  Sum_probs=48.6

Q ss_pred             cEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCC-chhhhcCCCccEEEccc
Q 035751            3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI-PKQLLSVTTLALLNLSY   81 (195)
Q Consensus         3 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l~~   81 (195)
                      +.|+.-++.|+.+  .....|+.|+.|.||-|.|+..-  .+..+++|+.|+|..|.|...- -..+.++++|+.|-|..
T Consensus        22 kKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   22 KKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             hhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            4455556665522  22346677777777777777332  3566777777777777775321 11345677777777777


Q ss_pred             CcCccC
Q 035751           82 NRLWGR   87 (195)
Q Consensus        82 N~l~g~   87 (195)
                      |+-.|.
T Consensus        98 NPCc~~  103 (388)
T KOG2123|consen   98 NPCCGE  103 (388)
T ss_pred             CCcccc
Confidence            766544

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.64  E-value=0.031  Score=46.59  Aligned_cols=69  Identities=17%  Similarity=0.265  Sum_probs=46.4

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccC-CCCCCCCccccCCCCCCcEEeCCCC-cCCCCCchhhhcCCCccEEE
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSH-NSLTGNIPVSFDNMTALESLDLSFN-KLEGRIPKQLLSVTTLALLN   78 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~   78 (195)
                      +++.|++++|.++ .+|.   -..+|+.|++++ +.++ .+|..+.  ++|++|++++| .+. .+|..      |+.|+
T Consensus        53 ~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~s------Le~L~  118 (426)
T PRK15386         53 ASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPES------VRSLE  118 (426)
T ss_pred             CCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-ccccc------cceEE
Confidence            3678999999888 5662   235799999987 4454 6676553  57899999988 554 45543      55555


Q ss_pred             cccCc
Q 035751           79 LSYNR   83 (195)
Q Consensus        79 l~~N~   83 (195)
                      +..|.
T Consensus       119 L~~n~  123 (426)
T PRK15386        119 IKGSA  123 (426)
T ss_pred             eCCCC
Confidence            55544

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.46  E-value=0.05  Score=45.42  Aligned_cols=76  Identities=17%  Similarity=0.291  Sum_probs=41.8

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCC-CCCCCCccccCCCCCCcEEeCCCCcCC--CCCchhhhcC------
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHN-SLTGNIPVSFDNMTALESLDLSFNKLE--GRIPKQLLSV------   71 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~l~~N~l~--~~~p~~~~~l------   71 (195)
                      +|+.|.++++.--..+|+.+.  .+|+.|++++| .+. .+|.      +|+.|+++.|...  +.+|..+..+      
T Consensus        73 sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n  143 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPNGLTSLSINSYN  143 (426)
T ss_pred             CCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcchHhheeccccc
Confidence            467788877332235665543  57888888877 444 4443      3455555554421  1344443322      


Q ss_pred             ------------CCccEEEcccCcCc
Q 035751           72 ------------TTLALLNLSYNRLW   85 (195)
Q Consensus        72 ------------~~L~~L~l~~N~l~   85 (195)
                                  ++|++|++++|...
T Consensus       144 ~~~~~~lp~~LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        144 PENQARIDNLISPSLKTLSLTGCSNI  169 (426)
T ss_pred             cccccccccccCCcccEEEecCCCcc
Confidence                        35667777766644

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.39  E-value=0.0089  Score=26.24  Aligned_cols=9  Identities=56%  Similarity=0.748  Sum_probs=2.9

Q ss_pred             cEEeCCCCc
Q 035751           51 ESLDLSFNK   59 (195)
Q Consensus        51 ~~L~l~~N~   59 (195)
                      +.|++++|+
T Consensus         4 ~~L~l~~n~   12 (17)
T PF13504_consen    4 RTLDLSNNR   12 (17)
T ss_dssp             SEEEETSS-
T ss_pred             CEEECCCCC
Confidence            333333333

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.38  E-value=0.045  Score=37.47  Aligned_cols=78  Identities=22%  Similarity=0.255  Sum_probs=40.4

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |+.+.+.. .+...-...|.++.+|+.+++..+ +.......|..+.+|+.+.+.+ .+.......+..+++|+.+++..
T Consensus        14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~   90 (129)
T PF13306_consen   14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS   90 (129)
T ss_dssp             --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred             CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence            55666653 455444556777777777777765 5534445567776777777765 33323344555677777777755


Q ss_pred             C
Q 035751           82 N   82 (195)
Q Consensus        82 N   82 (195)
                      +
T Consensus        91 ~   91 (129)
T PF13306_consen   91 N   91 (129)
T ss_dssp             T
T ss_pred             c
Confidence            4

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.30  E-value=0.0014  Score=51.45  Aligned_cols=75  Identities=25%  Similarity=0.265  Sum_probs=59.5

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCc-cccCCCCCCcEEeCCCCcCCCCCch-----hhhcCCCcc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIP-VSFDNMTALESLDLSFNKLEGRIPK-----QLLSVTTLA   75 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~-----~~~~l~~L~   75 (195)
                      |+.|.||-|.|+..-|  +..++.|++|+|..|.|....- ..+.++++|+.|.|..|.-.|.-+.     .+..+++|+
T Consensus        43 lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLk  120 (388)
T KOG2123|consen   43 LEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLK  120 (388)
T ss_pred             ceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccch
Confidence            6789999999995444  7789999999999999973221 3468899999999999988776554     355688888


Q ss_pred             EEE
Q 035751           76 LLN   78 (195)
Q Consensus        76 ~L~   78 (195)
                      .||
T Consensus       121 KLD  123 (388)
T KOG2123|consen  121 KLD  123 (388)
T ss_pred             hcc
Confidence            876

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.04  E-value=0.053  Score=42.78  Aligned_cols=13  Identities=31%  Similarity=0.330  Sum_probs=9.1

Q ss_pred             ccEEEecCCcCCC
Q 035751            2 FRATDLSSNRFCG   14 (195)
Q Consensus         2 L~~L~Ls~N~l~~   14 (195)
                      ++.+|||+|.|..
T Consensus        32 ~~evdLSGNtigt   44 (388)
T COG5238          32 LVEVDLSGNTIGT   44 (388)
T ss_pred             eeEEeccCCcccH
Confidence            5677888887653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.81  E-value=0.034  Score=27.03  Aligned_cols=14  Identities=50%  Similarity=0.612  Sum_probs=7.6

Q ss_pred             CCCcEEeCCCCcCC
Q 035751           48 TALESLDLSFNKLE   61 (195)
Q Consensus        48 ~~L~~L~l~~N~l~   61 (195)
                      ++|++|++++|.|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.81  E-value=0.034  Score=27.03  Aligned_cols=14  Identities=50%  Similarity=0.612  Sum_probs=7.6

Q ss_pred             CCCcEEeCCCCcCC
Q 035751           48 TALESLDLSFNKLE   61 (195)
Q Consensus        48 ~~L~~L~l~~N~l~   61 (195)
                      ++|++|++++|.|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.12  E-value=0.092  Score=35.90  Aligned_cols=77  Identities=18%  Similarity=0.271  Sum_probs=47.9

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.+++.++ +...-...|..+..|+.+.+.. .+.......|..+++|+.+++..+ +.......+... .|+.+.+.
T Consensus        36 ~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   36 SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             cccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            4678888875 6655567788888999999976 444345567888999999999876 553344456665 88888876


Q ss_pred             c
Q 035751           81 Y   81 (195)
Q Consensus        81 ~   81 (195)
                      .
T Consensus       112 ~  112 (129)
T PF13306_consen  112 S  112 (129)
T ss_dssp             T
T ss_pred             C
Confidence            5

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.06  E-value=0.018  Score=45.84  Aligned_cols=64  Identities=28%  Similarity=0.359  Sum_probs=47.3

Q ss_pred             CCCCCcEEEccCCCCCCC--CccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcCc
Q 035751           22 NFKSLKVLNLSHNSLTGN--IPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLW   85 (195)
Q Consensus        22 ~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~   85 (195)
                      ..+.++.|||.+|.|+..  +...+.+||.|++|+++.|++...+-..-....+|+.|-|.+..+.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS  134 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence            356788999999999743  4455788999999999999997544322135678888888776654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.01  E-value=0.052  Score=26.36  Aligned_cols=17  Identities=35%  Similarity=0.542  Sum_probs=12.3

Q ss_pred             CCCCcEEEccCCCCCCC
Q 035751           23 FKSLKVLNLSHNSLTGN   39 (195)
Q Consensus        23 l~~L~~L~Ls~N~l~~~   39 (195)
                      |++|+.|+|++|.|+..
T Consensus         1 L~~L~~L~L~~N~l~~l   17 (26)
T smart00370        1 LPNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCCEEECCCCcCCcC
Confidence            45778888888888733

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.01  E-value=0.052  Score=26.36  Aligned_cols=17  Identities=35%  Similarity=0.542  Sum_probs=12.3

Q ss_pred             CCCCcEEEccCCCCCCC
Q 035751           23 FKSLKVLNLSHNSLTGN   39 (195)
Q Consensus        23 l~~L~~L~Ls~N~l~~~   39 (195)
                      |++|+.|+|++|.|+..
T Consensus         1 L~~L~~L~L~~N~l~~l   17 (26)
T smart00369        1 LPNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCCEEECCCCcCCcC
Confidence            45778888888888733

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=91.87  E-value=0.078  Score=28.81  Aligned_cols=23  Identities=17%  Similarity=0.293  Sum_probs=10.0

Q ss_pred             hhhhhhHHHHHHHHHHHHhccCc
Q 035751          148 KMGYAFGLVIGLSIGYMVFSARK  170 (195)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~  170 (195)
                      ++++.+++++.+++++++++|||
T Consensus        16 ~VvVPV~vI~~vl~~~l~~~~rR   38 (40)
T PF08693_consen   16 GVVVPVGVIIIVLGAFLFFWYRR   38 (40)
T ss_pred             EEEechHHHHHHHHHHhheEEec
Confidence            33444444444444444444333

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=91.83  E-value=0.17  Score=34.88  Aligned_cols=16  Identities=13%  Similarity=-0.023  Sum_probs=6.7

Q ss_pred             hhhhhhhhhHHHHHHH
Q 035751          145 KMAKMGYAFGLVIGLS  160 (195)
Q Consensus       145 ~~~~~~~~~~~~~~~~  160 (195)
                      ..+++|+++|++..++
T Consensus        67 ~~Ii~gv~aGvIg~Il   82 (122)
T PF01102_consen   67 IGIIFGVMAGVIGIIL   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             eehhHHHHHHHHHHHH
Confidence            3344444444433333

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=91.37  E-value=0.054  Score=43.24  Aligned_cols=56  Identities=29%  Similarity=0.282  Sum_probs=25.7

Q ss_pred             CCCCCcEEEccCCC-CCCCCccccCCCCCCcEEeCCCCcCCCCCchh---hhcCCCccEEEc
Q 035751           22 NFKSLKVLNLSHNS-LTGNIPVSFDNMTALESLDLSFNKLEGRIPKQ---LLSVTTLALLNL   79 (195)
Q Consensus        22 ~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~---~~~l~~L~~L~l   79 (195)
                      .+++|..|||+.+. ++...-..|..++.|++|.++.+..  .+|..   +...++|.+||+
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv  370 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDV  370 (419)
T ss_pred             hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEe
Confidence            34555555555443 3322233344555555555555442  23332   223445555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=91.31  E-value=0.21  Score=39.53  Aligned_cols=39  Identities=28%  Similarity=0.392  Sum_probs=17.2

Q ss_pred             CCCCCcEEEccCCCCCCCCccc----cCCCCCCcEEeCCCCcC
Q 035751           22 NFKSLKVLNLSHNSLTGNIPVS----FDNMTALESLDLSFNKL   60 (195)
Q Consensus        22 ~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~l~~N~l   60 (195)
                      .++.|+..+||.|.+....|..    ++.-+.|.+|.+++|.+
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            4444555555555444333322    23334444555544444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=91.22  E-value=0.011  Score=47.11  Aligned_cols=85  Identities=26%  Similarity=0.282  Sum_probs=56.2

Q ss_pred             ccEEEecCCcCCCC-cchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCC-cCCCC-CchhhhcCCCccEEE
Q 035751            2 FRATDLSSNRFCGE-IPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFN-KLEGR-IPKQLLSVTTLALLN   78 (195)
Q Consensus         2 L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N-~l~~~-~p~~~~~l~~L~~L~   78 (195)
                      |++||||+..|+.. .-.-+..+.+|+.|.|.++++...+-..++.-.+|+.|+++.. .++.. ..-.+..++.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            56778887777632 2234566778888888888887666677777778888888764 34421 112345677788888


Q ss_pred             cccCcCcc
Q 035751           79 LSYNRLWG   86 (195)
Q Consensus        79 l~~N~l~g   86 (195)
                      ++.+.++.
T Consensus       267 lsWc~l~~  274 (419)
T KOG2120|consen  267 LSWCFLFT  274 (419)
T ss_pred             chHhhccc
Confidence            87776653

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.39  E-value=0.043  Score=26.15  Aligned_cols=13  Identities=54%  Similarity=0.733  Sum_probs=5.0

Q ss_pred             CCcEEeCCCCcCC
Q 035751           49 ALESLDLSFNKLE   61 (195)
Q Consensus        49 ~L~~L~l~~N~l~   61 (195)
                      +|++|+|++|.|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4444444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.76  E-value=0.0093  Score=45.84  Aligned_cols=69  Identities=30%  Similarity=0.382  Sum_probs=58.5

Q ss_pred             hhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcCccCCC
Q 035751           18 KVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIP   89 (195)
Q Consensus        18 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p   89 (195)
                      .++......+.||++.|++. .+-..|+-++.|..||++.|++. ..|..+.....+..+++..|..+ ..|
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p  104 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQP  104 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCC
Confidence            45667788899999999987 66777888999999999999998 78988888888888988888887 444

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=88.42  E-value=0.37  Score=34.33  Aligned_cols=26  Identities=15%  Similarity=0.346  Sum_probs=12.6

Q ss_pred             hhhhhhhHHHHHHHHHHHHhccCccc
Q 035751          147 AKMGYAFGLVIGLSIGYMVFSARKPQ  172 (195)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (195)
                      +++|+++++++++++++++|++|+++
T Consensus        54 vVVGVGg~ill~il~lvf~~c~r~kk   79 (154)
T PF04478_consen   54 VVVGVGGPILLGILALVFIFCIRRKK   79 (154)
T ss_pred             EEecccHHHHHHHHHhheeEEEeccc
Confidence            34455555555555555444433333

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=88.39  E-value=0.34  Score=23.73  Aligned_cols=13  Identities=38%  Similarity=0.585  Sum_probs=6.4

Q ss_pred             CCcEEeCCCCcCC
Q 035751           49 ALESLDLSFNKLE   61 (195)
Q Consensus        49 ~L~~L~l~~N~l~   61 (195)
                      +|+.|++++|+++
T Consensus         3 ~L~~L~vs~N~Lt   15 (26)
T smart00364        3 SLKELNVSNNQLT   15 (26)
T ss_pred             ccceeecCCCccc
Confidence            3444555555554

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=88.28  E-value=0.47  Score=23.25  Aligned_cols=13  Identities=62%  Similarity=0.790  Sum_probs=6.2

Q ss_pred             CCcEEeCCCCcCC
Q 035751           49 ALESLDLSFNKLE   61 (195)
Q Consensus        49 ~L~~L~l~~N~l~   61 (195)
                      +|+.|+++.|.|+
T Consensus         3 ~L~~L~L~~NkI~   15 (26)
T smart00365        3 NLEELDLSQNKIK   15 (26)
T ss_pred             ccCEEECCCCccc
Confidence            4444444444443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.84  E-value=0.085  Score=39.62  Aligned_cols=80  Identities=24%  Similarity=0.199  Sum_probs=42.5

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCC-CCCCCcccc-CCCCCCcEEeCCCC-cCCCCCchhhhcCCCccEEE
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNS-LTGNIPVSF-DNMTALESLDLSFN-KLEGRIPKQLLSVTTLALLN   78 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~-~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~   78 (195)
                      ++++|-++..|..+=-+.+.+++.++.|.+.+.. +....-..+ +-.++|+.|++++| +|+..--..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            3456666666654444556666666666665543 111100111 13467777777765 35543334555666666665


Q ss_pred             ccc
Q 035751           79 LSY   81 (195)
Q Consensus        79 l~~   81 (195)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            543

>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear

Probab=85.41  E-value=0.68  Score=37.22  Aligned_cols=33  Identities=9%  Similarity=0.035  Sum_probs=15.6

Q ss_pred             chhhhhhhhhHHHHHHHHHH-HHhccCccchhhh
Q 035751          144 WKMAKMGYAFGLVIGLSIGY-MVFSARKPQWFAR  176 (195)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~w~~~  176 (195)
                      ...+++|++++.++.+++++ ++.+||.+..|..
T Consensus       272 ~vPIaVG~~La~lvlivLiaYli~Rrr~~~gYq~  305 (306)
T PF01299_consen  272 LVPIAVGAALAGLVLIVLIAYLIGRRRSRAGYQS  305 (306)
T ss_pred             hHHHHHHHHHHHHHHHHHHhheeEeccccccccc
Confidence            44455565555444444333 3334444445654

Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=84.64  E-value=0.88  Score=22.51  Aligned_cols=11  Identities=73%  Similarity=0.830  Sum_probs=5.3

Q ss_pred             CcEEeCCCCcC
Q 035751           50 LESLDLSFNKL   60 (195)
Q Consensus        50 L~~L~l~~N~l   60 (195)
                      |++|||++|.+
T Consensus         4 L~~LdL~~N~i   14 (28)
T smart00368        4 LRELDLSNNKL   14 (28)
T ss_pred             cCEEECCCCCC
Confidence            44444444444

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=81.45  E-value=0.48  Score=28.52  Aligned_cols=19  Identities=16%  Similarity=0.308  Sum_probs=0.0

Q ss_pred             hhhhhHHHHHHHHHHHHhc
Q 035751          149 MGYAFGLVIGLSIGYMVFS  167 (195)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~  167 (195)
                      .|+++|+++.++++.+++.
T Consensus        16 aG~Vvgll~ailLIlf~iy   34 (64)
T PF01034_consen   16 AGGVVGLLFAILLILFLIY   34 (64)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3334444444444433333

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	195
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-15
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-07
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		6e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 57/108 (52%)
Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           D+S N   G IPK +G+   L +LNL HN ++G+IP    ++  L  LDLS NKL+GRIP
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697
Query: 66  KQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPL 113
           +               N L G IP   QF TF    ++ N  LCG PL
Sbjct: 698 QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 57/108 (52%)
Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           D+S N   G IPK +G+   L +LNL HN ++G+IP    ++  L  LDLS NKL+GRIP
Sbjct: 635 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 694
Query: 66  KQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPL 113
           +               N L G IP   QF TF    ++ N  LCG PL
Sbjct: 695 QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 742

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 55/136 (40%), Gaps = 24/136 (17%)
Query: 1   MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSF--DNMTA--------- 49
           +F +  +S NR  G+IP    N  +L  ++LS N L G+  V F  D  T          
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 50  ------------LESLDLSFNKLEGRIPKQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTF 97
                       L  LDL  N++ G +P+              +N L G IP+G     F
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293
Query: 98  ENDSYIGNIHLCGEPL 113
           +  +Y  N  LCG PL
Sbjct: 294 DVSAYANNKCLCGSPL 309

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 16 IPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
          +PK L N+K L +++LS+N ++     SF NMT L +L LS+N+L    P+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	195
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-54
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	5e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	9e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	6e-04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  182 bits (465), Expect = 3e-54
 Identities = 52/129 (40%), Positives = 72/129 (55%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           D+S N   G IPK +G+   L +LNL HN ++G+IP    ++  L  LDLS NKL+GRIP
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDAVPKA 125
           + + ++T L  ++LS N L G IP   QF TF    ++ N  LCG PL     ++A   A
Sbjct: 698 QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYA 757

Query: 126 PPSASTDHE 134
               S  H 
Sbjct: 758 HHQRSHHHH 766

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  111 bits (281), Expect = 5e-29
 Identities = 37/84 (44%), Positives = 44/84 (52%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            LS N   G IP  LG+   L+ L L  N L G IP     +  LE+L L FN L G IP
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483

Query: 66  KQLLSVTTLALLNLSYNRLWGRIP 89
             L + T L  ++LS NRL G IP
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIP 507

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  109 bits (275), Expect = 3e-28
 Identities = 38/85 (44%), Positives = 49/85 (57%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L +N F G+IP  L N   L  L+LS N L+G IP S  +++ L  L L  N LEG IP
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPR 90
           ++L+ V TL  L L +N L G IP 
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  105 bits (264), Expect = 8e-27
 Identities = 39/86 (45%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 6   DLSSNRFCGEIPKVLGNF--KSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
           DLSSN F G I   L      +L+ L L +N  TG IP +  N + L SL LSFN L G 
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433

Query: 64  IPKQLLSVTTLALLNLSYNRLWGRIP 89
           IP  L S++ L  L L  N L G IP
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIP 459

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  105 bits (264), Expect = 1e-26
 Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 2/103 (1%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L  N   GEIP  L N  +L  ++LS+N LTG IP     +  L  L LS N   G IP
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPR--GNQFNTFENDSYIGNI 106
            +L    +L  L+L+ N   G IP     Q      +   G  
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  103 bits (260), Expect = 3e-26
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            +S N+  G++   +    +L+ L++S N+ +  IP    + +AL+ LD+S NKL G   
Sbjct: 184 AISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFS 240

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGN 92
           + + + T L LLN+S N+  G IP   
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIPPLP 267

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  103 bits (260), Expect = 3e-26
 Identities = 37/85 (43%), Positives = 45/85 (52%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L  N   GEIP+ L   K+L+ L L  N LTG IP    N T L  + LS N+L G IP
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPR 90
           K +  +  LA+L LS N   G IP 
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPA 532

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  100 bits (251), Expect = 5e-25
 Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 6   DLSSNRFCGEIPKVL-GNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
            L+ N+F GEIP  L G   +L  L+LS N   G +P  F + + LESL LS N   G +
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334

Query: 65  PKQLLS-VTTLALLNLSYNRLWGRIP 89
           P   L  +  L +L+LS+N   G +P
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELP 360

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  100 bits (251), Expect = 5e-25
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           D+SSN F   IP  LG+  +L+ L++S N L+G+   +    T L+ L++S N+  G IP
Sbjct: 206 DVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264

Query: 66  KQLLSVTTLALLNLSYNRLWGRIP 89
              L   +L  L+L+ N+  G IP
Sbjct: 265 PLPLK--SLQYLSLAENKFTGEIP 286

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.4 bits (238), Expect = 3e-23
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 6   DLSSNRFCGEIPKV--LGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKLEG 62
           DLS N   G +  +  LG+   LK LN+S N+L     VS    + +LE LDLS N + G
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 63  RIPKQLL---SVTTLALLNLSYNRLWGRIPRGN 92
                 +       L  L +S N++ G +    
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVDVSR 198

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.4 bits (238), Expect = 3e-23
 Identities = 38/89 (42%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTA-LESLDLSFNKLEGR 63
            LSSN F GE+P   L   + LKVL+LS N  +G +P S  N++A L +LDLS N   G 
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383

Query: 64  IPKQL--LSVTTLALLNLSYNRLWGRIPR 90
           I   L      TL  L L  N   G+IP 
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPP 412

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.4 bits (238), Expect = 3e-23
 Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKLEGRI 64
           ++SSN+F G IP      KSL+ L+L+ N  TG IP         L  LDLS N   G +
Sbjct: 253 NISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310

Query: 65  PKQLLSVTTLALLNLSYNRLWGRIP 89
           P    S + L  L LS N   G +P
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELP 335

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 92.3 bits (230), Expect = 3e-22
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            LS+NR  GEIPK +G  ++L +L LS+NS +GNIP    +  +L  LDL+ N   G IP
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHL 108
             +   +      ++ N + G+     + +  + + +     L
Sbjct: 556 AAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.9 bits (216), Expect = 2e-20
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVSFD---NMTALESLDLSFNKLE 61
           ++SSN               SL+VL+LS NS++G   V +        L+ L +S NK+ 
Sbjct: 132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191

Query: 62  GRIPKQLLSVTTLALLNLSYNRLWGRIP 89
           G +   +     L  L++S N     IP
Sbjct: 192 GDVD--VSRCVNLEFLDVSSNNFSTGIP 217

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.0 bits (211), Expect = 1e-19
 Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 2/86 (2%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHN--SLTGNIPVSFDNMTALESLDLSFNKLEGR 63
            +++N   G+    + N    K  + + N     G      + ++     +++     G 
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623

Query: 64  IPKQLLSVTTLALLNLSYNRLWGRIP 89
                 +  ++  L++SYN L G IP
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIP 649

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.0 bits (211), Expect = 1e-19
 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 6   DLSS---NRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG 62
           DLSS   N     +   L +   L+ L LS++ + G++   F    +L SLDLS N L G
Sbjct: 56  DLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSG 114

Query: 63  RIP--KQLLSVTTLALLNLSYNRLWGRIPRGNQFN 95
            +     L S + L  LN+S N L           
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 149

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.4 bits (207), Expect = 4e-19
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 6/86 (6%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            LS+N F G IP  LG+ +SL  L+L+ N   G IP +        S  ++ N + G+  
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRY 575

Query: 66  KQLLSVTTLALLNLSYN--RLWGRIP 89
             + +       + + N     G   
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRS 601

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.6 bits (192), Expect = 4e-17
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 6/87 (6%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFN--KLEGR 63
           DL++N F G IP  +          ++ N + G   V   N    +    + N  + +G 
Sbjct: 544 DLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599

Query: 64  IPKQLLSVTTLALLNLSYNRLWGRIPR 90
             +QL  ++T    N++     G    
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGGHTSP 626

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.8 bits (151), Expect = 1e-11
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 25  SLKVLNLSHNSLT---GNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81
            +  ++LS   L      +  S  ++T LESL LS + + G +        +L  L+LS 
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSR 109

Query: 82  NRLWGRIPRGNQF 94
           N L G +      
Sbjct: 110 NSLSGPVTTLTSL 122

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  144 bits (366), Expect = 8e-43
 Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 2/113 (1%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DLS N   G+   + G+ K+ + ++L+ NSL  ++         L  LDL  N++ G +P
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLP 261

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118
           + L  +  L  LN+S+N L G IP+G     F+  +Y  N  LCG PL   C+
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  108 bits (273), Expect = 5e-29
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 12/104 (11%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            ++     G IP  L   K+L  L+ S+N+L+G +P S  ++  L  +    N++ G IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 66  KQLLSVTTLA-LLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHL 108
               S + L   + +S NRL G+IP               N++L
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIP-----------PTFANLNL 199

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  104 bits (262), Expect = 2e-27
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 6   DLSS-NRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
            +   N   G IP  +     L  L ++H +++G IP     +  L +LD S+N L G +
Sbjct: 82  YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 65  PKQLLSVTTLALLNLSYNRLWGRIPR 90
           P  + S+  L  +    NR+ G IP 
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPD 167

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 76.0 bits (188), Expect = 6e-17
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 5   TDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTG--NIPVSFDNMTALESLDLS-FNKLE 61
           TD  +  + G +         +  L+LS  +L     IP S  N+  L  L +   N L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 62  GRIPKQLLSVTTLALLNLSYNRLWGRIP 89
           G IP  +  +T L  L +++  + G IP
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIP 118

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 93.6 bits (233), Expect = 1e-22
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DLS  +     P    +  SL+VLN+SHN+        +  + +L+ LD S N +     
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

Query: 66  KQLLSV-TTLALLNLSYNRL 84
           ++L    ++LA LNL+ N  
Sbjct: 536 QELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 87.8 bits (218), Expect = 1e-20
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 6   DLSSNRFCGEI-PKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
            ++ N F     P +    ++L  L+LS   L    P +F+++++L+ L++S N      
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 510

Query: 65  PKQLLSVTTLALLNLSYNRLWGRIP 89
                 + +L +L+ S N +     
Sbjct: 511 TFPYKCLNSLQVLDYSLNHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 87.0 bits (216), Expect = 2e-20
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 14/114 (12%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DLS N           +F  L+VL+LS   +      ++ +++ L +L L+ N ++    
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPR--------------GNQFNTFENDSYIGN 105
                +++L  L      L                     N   +F+   Y  N
Sbjct: 94  GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 82.4 bits (204), Expect = 9e-19
 Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
           D   +         V  + ++L  L++SH          F+ +++LE L ++ N  +   
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 65  PKQLLS-VTTLALLNLSYNRL 84
              + + +  L  L+LS  +L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQL 482

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.9 bits (182), Expect = 7e-16
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 6  DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
                F  +IP  L    S K L+LS N L      SF +   L+ LDLS  +++    
Sbjct: 13 QCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 66 KQLLSVTTLALLNLSYNRLWGRIP 89
              S++ L+ L L+ N +     
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLAL 93

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.5 bits (181), Expect = 9e-16
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 6   DLSSNRF-CGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALE----SLDLSFNKL 60
           +++ N     ++P+   N  +L+ L+LS N +          +  +     SLDLS N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 61  EGRIPKQLLSVTTLALLNLSYNRLWGRIPRG 91
              I         L  L L  N     + + 
Sbjct: 190 NF-IQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 5   TDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLT--GNIPVSFDNMTALESLDLSFNKLEG 62
             L+     G       +  SL+ L+LS N L+  G    S    T+L+ LDLSFN +  
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 63  RIPKQLLSVTTLALLNLSYNRLWGRIPRG 91
            +    L +  L  L+  ++ L       
Sbjct: 388 -MSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 20/117 (17%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL--EGR 63
           +L + +F G+ P      KSLK L  + N   G    S  ++ +LE LDLS N L  +G 
Sbjct: 310 ELVNCKF-GQFPT--LKLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 64  IPKQLLSVTTLALLNLSYNRLWGRIP-------------RGNQFNTFENDSYIGNIH 107
             +     T+L  L+LS+N +                  + +        S   ++ 
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 9/75 (12%), Positives = 24/75 (32%), Gaps = 2/75 (2%)

Query: 10  NRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLL 69
           + +  +I  +     ++   +L   ++      S+      + L+L   K       +L 
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLK 325

Query: 70  SVTTLALLNLSYNRL 84
           S+  L   +      
Sbjct: 326 SLKRLTFTSNKGGNA 340

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 10/100 (10%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPV------SFDNMTALESLDLSFN 58
            L +N     + K  +     L+V  L          +      + + +  L   +    
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 59  KLE---GRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFN 95
            L+     I      +T ++  +L    +         F 
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 4/78 (5%)

Query: 6   DLSSNRFCGEIPKVLGN-FKSLKVLNLSHNSLTGNIPVS--FDNMTALESLDLSFNKLEG 62
           D S N       + L +   SL  LNL+ N              +     L +   ++E 
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMEC 583

Query: 63  RIPKQLLSVTTLALLNLS 80
             P        +  LN++
Sbjct: 584 ATPSDKQG-MPVLSLNIT 600

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 91.6 bits (228), Expect = 6e-22
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 4/115 (3%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           +L SN F     +V  +   LK+++L  N+L       F+N  +L+SL+L  N +     
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601

Query: 66  KQLLSV-TTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSN 119
           K        L  L++ +N           F  + N+++     L        C+ 
Sbjct: 602 KVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSH---YLCNT 653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 84.3 bits (209), Expect = 2e-19
 Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 6/116 (5%)

Query: 5   TDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
             L  +   G     L     L +LNL  N         F ++  L+ +DL  N L    
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576

Query: 65  PKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFE-NDSYIGNIHLCGEPLTVTCSN 119
                +  +L  LNL  N +            F      +  + +   P   TC +
Sbjct: 577 ASVFNNQVSLKSLNLQKNLITSVEK-----KVFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.1 bits (206), Expect = 6e-19
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L SN             K+L  L+LSHN L+     +   +  L+ L LS NK++    
Sbjct: 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162

Query: 66  K--QLLSVTTLALLNLSYNRLWGRIPR 90
           +   + + ++L  L LS N++    P 
Sbjct: 163 EELDIFANSSLKKLELSSNQIKEFSPG 189

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 81.6 bits (202), Expect = 2e-18
 Identities = 21/84 (25%), Positives = 30/84 (35%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           +L  N       K      +L  L+L  NS+       F     L +LDLS N L     
Sbjct: 79  NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138

Query: 66  KQLLSVTTLALLNLSYNRLWGRIP 89
              + +  L  L LS N++     
Sbjct: 139 GTQVQLENLQELLLSNNKIQALKS 162

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.4 bits (199), Expect = 4e-18
 Identities = 24/85 (28%), Positives = 34/85 (40%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           D+  N      P++      LKVLNL HN L+     +F   T L  L L  N ++    
Sbjct: 55  DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPR 90
              +    L  L+LS+N L      
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLG 139

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 79.7 bits (197), Expect = 8e-18
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 3/98 (3%)

Query: 6   DLSSNRFCGEIPKVLGNFK--SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
            LS+++            K  +L +L+LS+N+L      SF  +  LE   L +N ++  
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287

Query: 64  IPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDS 101
               L  +  +  LNL  +     I         ++ S
Sbjct: 288 FSHSLHGLFNVRYLNLKRSFTKQSIS-LASLPKIDDFS 324

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.5 bits (194), Expect = 2e-17
 Identities = 17/84 (20%), Positives = 32/84 (38%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           +L+ N+           +  L  L++  N+++   P     +  L+ L+L  N+L     
Sbjct: 31  NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD 90

Query: 66  KQLLSVTTLALLNLSYNRLWGRIP 89
           K     T L  L+L  N +     
Sbjct: 91  KTFAFCTNLTELHLMSNSIQKIKN 114

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.1 bits (193), Expect = 3e-17
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 10/94 (10%)

Query: 6   DLSSNRFCG--EIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE-- 61
            L           P      ++L +L+LS+N++        + +  LE LDL  N L   
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

Query: 62  ------GRIPKQLLSVTTLALLNLSYNRLWGRIP 89
                 G     L  ++ L +LNL  N       
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.7 bits (192), Expect = 4e-17
 Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 17/126 (13%)

Query: 6   DLSSNRFCGEIP-KVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG-- 62
           DL  N    E+  +     +++  + LS+N        SF  + +L+ L L    L+   
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470

Query: 63  RIPKQLLSVTTLALLNLSYNRLWGRIPR--------------GNQFNTFENDSYIGNIHL 108
             P     +  L +L+LS N +                     N        +  G    
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 530

Query: 109 CGEPLT 114
             + L+
Sbjct: 531 FLKGLS 536

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.6 bits (189), Expect = 8e-17
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNM--TALESLDLSFNKLEGR 63
           DLS N             ++L+ L LS+N +        D    ++L+ L+LS N+++  
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186

Query: 64  IPKQLLSVTTLALLNLSYNRLWGRIPRG 91
            P    ++  L  L L+  +L   +   
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.6 bits (189), Expect = 1e-16
 Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 9/105 (8%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHN---------SLTGNIPVSFDNMTALESLDLS 56
            L  N         L    +++ LNL  +         SL      SF  +  LE L++ 
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337

Query: 57  FNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDS 101
            N + G        +  L  L+LS +    R      F +  +  
Sbjct: 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 6  DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
          D S  +   ++P  L    ++ VLNL+HN L      +F   + L SLD+ FN +    P
Sbjct: 10 DCSHLKL-TQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66

Query: 66 KQLLSVTTLALLNLSYNRLWGRIP 89
          +    +  L +LNL +N L     
Sbjct: 67 ELCQKLPMLKVLNLQHNELSQLSD 90

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 6   DLSSNRFCGEIPKVLGNFK--SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
            LS+N+      + L  F   SLK L LS N +    P  F  +  L  L L+  +L   
Sbjct: 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS 210

Query: 64  IPKQL---LSVTTLALLNLSYNRL 84
           + ++L   L+ T++  L+LS ++L
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQL 234

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.0 bits (185), Expect = 3e-16
 Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 10/129 (7%)

Query: 6   DLSSNRFCGEIPKVLGNF---KSLKVLNLSHNSLTGNIPVSFDNM--TALESLDLSFNKL 60
            L++ +    + + L       S++ L+LS++ L+     +F  +  T L  LDLS+N L
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 61  EGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSND 120
                     +  L    L YN +          ++      +  ++L       + S  
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFS-----HSLHGLFNVRYLNLKRSFTKQSISLA 315

Query: 121 AVPKAPPSA 129
           ++PK    +
Sbjct: 316 SLPKIDDFS 324

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.7 bits (184), Expect = 4e-16
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 9/98 (9%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            +S               K L+ LN+  N + G     F  +  L+ L LS +    R  
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370

Query: 66  K----QLLSVTTLALLNLSYNRLWGRIPRGNQFNTFEN 99
                  L+ + L +LNL+ N++          + F  
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIES-----DAFSW 403

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.9 bits (182), Expect = 7e-16
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 6   DLSSNRF-----CGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
            LS++         E    L +   L +LNL+ N ++     +F  +  LE LDL  N++
Sbjct: 359 SLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417

Query: 61  EGRIPKQLLS-VTTLALLNLSYNRL 84
              +  Q    +  +  + LSYN+ 
Sbjct: 418 GQELTGQEWRGLENIFEIYLSYNKY 442

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.9 bits (182), Expect = 7e-16
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHN--SLTGNIPVSFDNM--TALESLDLSFNKLE 61
           ++  N   G    +     +LK L+LS++  SL      +F ++  + L  L+L+ NK+ 
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394

Query: 62  GRIPKQLLSVTTLALLNLSYNRLWGRIPRG 91
                    +  L +L+L  N +   +   
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 25 SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRL 84
          S +V + SH  LT  +P      T +  L+L+ N+L           + L  L++ +N +
Sbjct: 5  SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 85 WGRIP 89
              P
Sbjct: 62 SKLEP 66

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 87.4 bits (217), Expect = 2e-20
 Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 3/80 (3%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           D   NR   E P+ +    SL  L +  N +   +         +  LD+  N       
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDL 604

Query: 66  KQLLSVTTLALLNLSYNRLW 85
             +       +  L Y++  
Sbjct: 605 SYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 84.7 bits (210), Expect = 1e-19
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 6   DLSSNRFC-GEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
            +  N      +   L   K L +L   +N L G +P +F +   L SL+L++N++   I
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-I 368

Query: 65  PKQLLSVTT-LALLNLSYNRLWGRIPRGNQFNTFEN 99
           P      T  +  L+ ++N+L   IP      +   
Sbjct: 369 PANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSV 403

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 84.3 bits (209), Expect = 2e-19
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSH------NSLTGNIPVSFDNMTALESLDLSFNK 59
           DLS N F  + P    N  +LK   + +      N      P       +L  L +  N 
Sbjct: 519 DLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 60  LEGRIPKQLLSVTTLALLNLSYNRLWGRIP 89
           +   + +++     +++L++  N       
Sbjct: 578 IRK-VNEKITP--NISVLDIKDNPNISIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.9 bits (200), Expect = 3e-18
 Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 15/108 (13%)

Query: 6   DLSSNRF-------CGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFN 58
           D S N            +        ++  +NLS+N ++      F   + L S++L  N
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467

Query: 59  KLEG-------RIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFEN 99
            L            +   +   L  ++L +N+L  ++    +  T   
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPY 514

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 13/98 (13%), Positives = 33/98 (33%), Gaps = 20/98 (20%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTG-------------------NIPVSFDN 46
              SN     + K +     L+   + ++                          + +DN
Sbjct: 189 GQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN 247

Query: 47  MTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRL 84
           +  L  +++       ++P  L ++  + L+N++ NR 
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.7 bits (184), Expect = 4e-16
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 10/87 (11%)

Query: 6   DLSSNRFCGEIPK--VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESL------DLSF 57
           DL  N+   ++           L  ++LS+NS +   P    N + L+        D   
Sbjct: 494 DLRFNKL-TKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG 551

Query: 58  NKLEGRIPKQLLSVTTLALLNLSYNRL 84
           N+     P+ +    +L  L +  N +
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDI 578

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.7 bits (184), Expect = 4e-16
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 6/88 (6%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKLEGRI 64
           +   N+  G++P   G+   L  LNL++N +T  IP +       +E+L  + NKL+  I
Sbjct: 336 ECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKY-I 392

Query: 65  PK--QLLSVTTLALLNLSYNRLWGRIPR 90
           P      SV+ ++ ++ SYN +     +
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.7 bits (184), Expect = 4e-16
 Identities = 16/96 (16%), Positives = 39/96 (40%), Gaps = 11/96 (11%)

Query: 6   DLSSNRFCGEIPKVL--GNFKSLKVLNLSHNSLTG-------NIPVSFDNMTALESLDLS 56
             + N+    IP +    +   +  ++ S+N +          +  +      + S++LS
Sbjct: 383 SFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441

Query: 57  FNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRGN 92
            N++     +   + + L+ +NL  N L   IP+ +
Sbjct: 442 NNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNS 476

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 8/88 (9%), Positives = 28/88 (31%), Gaps = 8/88 (9%)

Query: 5   TDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL---- 60
            +    +          N K L  + + +      +P     +  ++ ++++ N+     
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289

Query: 61  ----EGRIPKQLLSVTTLALLNLSYNRL 84
               + +          + ++ + YN L
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNL 317

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.1 bits (172), Expect = 2e-14
 Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 5/100 (5%)

Query: 5   TDLSSNRFCGEIPKV-LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG- 62
                    G  P V L +   +  L+L     +G +P +   +T LE L L  +  +  
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 63  ---RIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFEN 99
                PK + +  +                  +    F +
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 9e-11
 Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 7/90 (7%)

Query: 6   DLSSNRFCG----EIPKVLGNFKSLKVLNLSHNSLTGNIP--VSFDNMTALESLDLSFNK 59
            L S+          PK +    S +                   ++ + L    ++ + 
Sbjct: 111 ALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDP 170

Query: 60  LEGRIPKQLLSVTTLALLNLSYNRLWGRIP 89
            +  I K          +    N +   + 
Sbjct: 171 QQKSIKKSSRITLKDTQIGQLSNNITF-VS 199

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 81.2 bits (201), Expect = 2e-18
 Identities = 23/79 (29%), Positives = 38/79 (48%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DLS  +       V      L++LN+SHN+L       ++ + +L +LD SFN++E    
Sbjct: 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

Query: 66  KQLLSVTTLALLNLSYNRL 84
                  +LA  NL+ N +
Sbjct: 539 ILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 79.7 bits (197), Expect = 8e-18
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 6/115 (5%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
            ++ N F       V  N  +L  L+LS   L       FD +  L+ L++S N L    
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513

Query: 65  PKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSN 119
                 + +L+ L+ S+NR+       ++         +   +L    +   C +
Sbjct: 514 SSHYNQLYSLSTLDCSFNRI-----ETSKGILQHFPKSLAFFNLTNNSVACICEH 563

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DLS         K       L  L L+ N +    P SF  +T+LE+L     KL     
Sbjct: 62  DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES 121

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFEN 99
             +  + TL  LN+++N +         F+   N
Sbjct: 122 FPIGQLITLKKLNVAHNFI-HSCKLPAYFSNLTN 154

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.9 bits (182), Expect = 6e-16
 Identities = 19/81 (23%), Positives = 32/81 (39%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DLS N           NF  L+ L+LS   +      ++  +  L +L L+ N ++   P
Sbjct: 38  DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP 97

Query: 66  KQLLSVTTLALLNLSYNRLWG 86
                +T+L  L     +L  
Sbjct: 98  GSFSGLTSLENLVAVETKLAS 118

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKLEGRI 64
           DLS N     +       + L+ L+  H++L      S F ++  L  LD+S+   +   
Sbjct: 382 DLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440

Query: 65  PKQLLSVTTLALLNLSYNRLWGRIPRG 91
               L +T+L  L ++ N         
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSN 467

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.4 bits (178), Expect = 3e-15
 Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 6   DLSSNRFCGEIP-KVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
           D   +            + + L  L++S+ +   +    F  +T+L +L ++ N  +   
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464

Query: 65  PKQLLS-VTTLALLNLSYNRL 84
              + +  T L  L+LS  +L
Sbjct: 465 LSNVFANTTNLTFLDLSKCQL 485

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 6  DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
               +   ++P  +    S K ++LS N L      SF N + L+ LDLS  ++E    
Sbjct: 17 QCMDQKL-SKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED 73

Query: 66 KQLLSVTTLALLNLSYNRLWG 86
          K    +  L+ L L+ N +  
Sbjct: 74 KAWHGLHHLSNLILTGNPIQS 94

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNM--TALESLDLSFNKLEGR 63
            L+ N+  G I        SL  L+LS N+L+ +   S+ ++   +L  LDLSFN     
Sbjct: 334 TLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII- 390

Query: 64  IPKQLLSVTTLALLNLSYNRLWGRIPRG 91
           +    + +  L  L+  ++ L       
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFS 418

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 6   DLSSNRFCG-EIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTAL----ESLDLSFNKL 60
           +++ N     ++P    N  +L  ++LS+N +          +        SLD+S N +
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193

Query: 61  EGRIPKQLLSVTTLALLNLSYNRLWGRIPRG 91
           +  I  Q      L  L L  N     I + 
Sbjct: 194 DF-IQDQAFQGIKLHELTLRGNFNSSNIMKT 223

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 8e-10
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L+      +  + +      + L++    L         ++  L+SL L+ NK      
Sbjct: 291 SLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGSISFK 345

Query: 66  KQLLSVTTLALLNLSYNRL 84
           K  L   +L+ L+LS N L
Sbjct: 346 KVAL--PSLSYLDLSRNAL 362

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 10/87 (11%), Positives = 30/87 (34%), Gaps = 10/87 (11%)

Query: 6   DLSSNRFCGEI------PKVLGNFKSLKV--LNLSHNSLTGNIPVSFDNMTALESLDLSF 57
            L    F  E       P ++     + +    L++ +   +  V F  +  + ++ L+ 
Sbjct: 235 RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294

Query: 58  NKLEGRIPKQLLSVTTLALLNLSYNRL 84
             ++    + +        L++   +L
Sbjct: 295 VSIKY--LEDVPKHFKWQSLSIIRCQL 319

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 5/98 (5%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIP-VSFDNMTALESLDLSFNKLEGRI 64
           D+S N     I         L  L L  N  + NI      N+  L    L   + +   
Sbjct: 187 DMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 65  PKQLLSVTT---LALLNLSYNRLWGRIPRGNQFNTFEN 99
             ++   +    L  + +   RL       +    F  
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHC 283

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 79.1 bits (195), Expect = 1e-17
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 9/89 (10%)

Query: 5   TDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG-- 62
            +    +          N K L  + L +      +P    ++  L+SL+++ N+     
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 63  -------RIPKQLLSVTTLALLNLSYNRL 84
                  R+     +   + +  + YN L
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNL 560

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.6 bits (191), Expect = 4e-17
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSH------NSLTGNIPVSFDNMTALESLDLSFNK 59
           D+S N F    P    N   LK   + H      N +    P       +L  L +  N 
Sbjct: 759 DVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817

Query: 60  LEGRIPKQLLSVTTLALLNLSYNRL 84
           +   + ++L     L +L+++ N  
Sbjct: 818 IRK-VDEKLT--PQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.1 bits (187), Expect = 1e-16
 Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 20/110 (18%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTG-------------------NIPVSFDN 46
              +NR    I K +     L+++  +++  T                    N  +S+ N
Sbjct: 431 GNLTNRI-TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN 489

Query: 47  MTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNT 96
           +  L  ++L       ++P  L  +  L  LN++ NR          +  
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.8 bits (181), Expect = 8e-16
 Identities = 17/123 (13%), Positives = 40/123 (32%), Gaps = 23/123 (18%)

Query: 6   DLSSNRFCGEIPK--VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSF------ 57
           DL  N+    +           L  +++S+N  +   P    N + L++  +        
Sbjct: 734 DLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791

Query: 58  NKLEGRIPKQLLSVTTLALLNLSYNRLWGRIP------------RGNQFNTFENDSYIGN 105
           N++  + P  + +  +L  L +  N +  ++               N   + +  S    
Sbjct: 792 NRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNISIDVTSVCPY 850

Query: 106 IHL 108
           I  
Sbjct: 851 IEA 853

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 72.6 bits (178), Expect = 3e-15
 Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 3/79 (3%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           D   NR   + P  +    SL  L +  N +   +         L  LD++ N       
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDV 844

Query: 66  KQLLSVTTLALLNLSYNRL 84
             +       +  L Y++ 
Sbjct: 845 TSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 72.6 bits (178), Expect = 3e-15
 Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 13/106 (12%)

Query: 6   DLSSNRFCGEIPKVLG-----NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
           D S N+   E   +          +   + LS+N +       F   + + ++ LS N +
Sbjct: 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709

Query: 61  E-------GRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFEN 99
                           +   L  ++L +N+L   +    +  T   
Sbjct: 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPY 754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.1 bits (174), Expect = 7e-15
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 8/97 (8%)

Query: 6   DLSSNRFCGEIPK--VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
            +  N    E P    L     L +L+  HN +  ++  +F     L  L L +N++E  
Sbjct: 554 YMGYNNL-EEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEE- 609

Query: 64  IPKQLLSVTT-LALLNLSYNRLWGRIPRGNQFNTFEN 99
           IP+   + T  +  L  S+N+L   IP      +   
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYV 645

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.9 bits (171), Expect = 2e-14
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKLEGRI 64
           D   N+      +  G    L  L L +N +   IP         +E L  S NKL+  I
Sbjct: 579 DCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-I 634

Query: 65  PK--QLLSVTTLALLNLSYNRL 84
           P      SV  +  ++ SYN++
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKI 656

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.1 bits (161), Expect = 4e-13
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L+     G +P  +G    LKVL+   +S T +  +  D     +  +   +++     
Sbjct: 329 SLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK 388

Query: 66  KQLLSV-TTLALLNLSYNRL 84
           K  L     L L +L  + +
Sbjct: 389 KMFLDYDQRLNLSDLLQDAI 408

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.7 bits (160), Expect = 6e-13
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 10/92 (10%)

Query: 6   DLSSNRFCGEIPKVLGNF-KSLKVLNLSHNSLTGNIP--VSFDNMTALESLDLSFNKLEG 62
            L  N+   EIP+    F   ++ L  SHN L   IP   +  ++  + S+D S+NK+  
Sbjct: 601 KLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGS 658

Query: 63  RIPKQLLSVTTLAL-----LNLSYNRLWGRIP 89
                  S+          + LSYN +     
Sbjct: 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.1 bits (156), Expect = 2e-12
 Identities = 11/86 (12%), Positives = 27/86 (31%)

Query: 5   TDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
            +   + +  +    L N   +  L+L+     G +P +   +T L+ L    +      
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 65  PKQLLSVTTLALLNLSYNRLWGRIPR 90
                   T  +     +R+     +
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKK 389

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 12/106 (11%), Positives = 35/106 (33%), Gaps = 6/106 (5%)

Query: 7   LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGN---IPVSFDNMTALESLDL--SFNKLE 61
                        L   + L + +L  +++  N    P+  D+  +L+   +    N++ 
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 62  GRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIH 107
             I K +  +T L ++  + +         +  +   + +      
Sbjct: 439 F-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE 483

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.5 bits (194), Expect = 2e-17
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DL++     E+P  L    +LK L LS N       +S  N  +L  L +  N     + 
Sbjct: 284 DLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342

Query: 66  KQLLSV-TTLALLNLSYNRLWGRIPRGNQF 94
              L     L  L+LS++ +        Q 
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQL 372

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.7 bits (192), Expect = 3e-17
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 9/117 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFK---SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG 62
           +L  N F     +   + +    L++L LS   L+     +F ++  +  +DLS N+L  
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514

Query: 63  RIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSN 119
               + LS      LNL+ N +   +P     +     S    I+L   PL  TCSN
Sbjct: 515 -SSIEALSHLKGIYLNLASNHISIILP-----SLLPILSQQRTINLRQNPLDCTCSN 565

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 76.2 bits (188), Expect = 1e-16
 Identities = 16/79 (20%), Positives = 25/79 (31%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DL+  +          +   L  L L+ N L      +     AL+ L      +     
Sbjct: 63  DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF 122

Query: 66  KQLLSVTTLALLNLSYNRL 84
             L +  TL  L L  N +
Sbjct: 123 IPLHNQKTLESLYLGSNHI 141

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.7 bits (184), Expect = 4e-16
 Identities = 17/79 (21%), Positives = 28/79 (35%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L++N         L   K+LK L      ++    +   N   LESL L  N +     
Sbjct: 87  VLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL 146

Query: 66  KQLLSVTTLALLNLSYNRL 84
            +      L +L+   N +
Sbjct: 147 PKGFPTEKLKVLDFQNNAI 165

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.3 bits (183), Expect = 6e-16
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 4/103 (3%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
                         L N K+L+ L L  N ++            L+ LD   N +   + 
Sbjct: 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LS 169

Query: 66  KQLLSV---TTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGN 105
           K+ +S     T   LNL+ N + G  P       F++ ++ G 
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.9 bits (182), Expect = 8e-16
 Identities = 14/79 (17%), Positives = 25/79 (31%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           + S N              +L  L+L+   +      +F +   L++L L+ N L     
Sbjct: 39  EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE 98

Query: 66  KQLLSVTTLALLNLSYNRL 84
             L     L  L      +
Sbjct: 99  TALSGPKALKHLFFIQTGI 117

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query: 6   DLSSNRFCGEI-PKVLGNFKSLKVLNLSHNSLT--GNIPVSFDNMTALESLDLSFNKLEG 62
            +  N    E+    L N ++L+ L+LSH+ +       +   N++ L+SL+LS+N+   
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

Query: 63  RIPKQLLSVTTLALLNLSYNRLWGRIPRG 91
              +       L LL+L++ RL  +  + 
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQS 419

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.8 bits (174), Expect = 8e-15
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
           DL+  R   +  +    N   LKVLNLSH+ L  +    FD + AL+ L+L  N      
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465

Query: 65  PKQ---LLSVTTLALLNLSYNRL 84
            ++   L ++  L +L LS+  L
Sbjct: 466 IQKTNSLQTLGRLEILVLSFCDL 488

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 6   DLSSNR--FCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
           DLS +           L N   L+ LNLS+N        +F     LE LDL+F +L+ +
Sbjct: 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415

Query: 64  IPKQLLS-VTTLALLNLSYNRL 84
             +     +  L +LNLS++ L
Sbjct: 416 DAQSPFQNLHLLKVLNLSHSLL 437

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALE--SLDLSFNKLEGR 63
            L SN             + LKVL+  +N++         ++      SL+L+ N + G 
Sbjct: 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG- 193

Query: 64  IPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFEN 99
           I            LN    +    I +G + +T ++
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 6  DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
          +  +     EIP  L    S + L  S N L      +F  +  L  LDL+  ++     
Sbjct: 18 NCENLGL-NEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74

Query: 66 KQLLSVTTLALLNLSYNRL 84
              S   L  L L+ N L
Sbjct: 75 DTFQSQHRLDTLVLTANPL 93

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 8/96 (8%)

Query: 6   DLSSNRFCGEIPKVLGNFK--SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
                      P V       S++ +NL  +        +F   + L+ LDL+   L   
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-E 292

Query: 64  IPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFEN 99
           +P  L+ ++TL  L LS N+            +  N
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQ-----ISASN 323

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 5/94 (5%)

Query: 2   FRATDLSSNRFCGEIPKVLGN--FKSLKVLNLSHNSLTGNIPVSFDNMTA--LESLDLSF 57
           F++ +    +    I K L N   +SL +            P  F+ +    +ES++L  
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 58  NKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRG 91
           +             + L  L+L+   L   +P G
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHL-SELPSG 296

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKV--LNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
           D  +N       + + + +      LNL+ N + G I     +    +SL+    +    
Sbjct: 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLV 217

Query: 64  IPKQL--LSVTTLALLNLSYNRL 84
           I K L   ++ +L L        
Sbjct: 218 IFKGLKNSTIQSLWLGTFEDMDD 240

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 27 KVLNLSHNSLT---GNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNR 83
          K  N  +  L    G +P S       E L+ SFN L          +  L  L+L+  +
Sbjct: 15 KTYNCENLGLNEIPGTLPNS------TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ 68

Query: 84 LWGRIPRG 91
          ++  I   
Sbjct: 69 IYW-IHED 75

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.3 bits (172), Expect = 1e-14
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 12/113 (10%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
           DLS N    +I        + L+ L +S+N L   + +    +  L+ LDLS N L   +
Sbjct: 260 DLSYNEL-EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HV 316

Query: 65  PKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTC 117
            +       L  L L +N +   +      +T      + N+ L         
Sbjct: 317 ERNQPQFDRLENLYLDHNSI-VTLK----LSTHHT---LKNLTLSHNDWDCNS 361

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 65.7 bits (160), Expect = 4e-13
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L  N    +    L N+  L  ++LS+N L   +   F  M  LE L +S N+L   + 
Sbjct: 238 KLQHNNL-TDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALN 294

Query: 66  KQLLSVTTLALLNLSYNRL 84
                + TL +L+LS+N L
Sbjct: 295 LYGQPIPTLKVLDLSHNHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.2 bits (156), Expect = 2e-12
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIP-VSFDNMTALESLDLSFNKLEGR 63
              ++    ++P  +L +F+ +++LNL+   +   I   +F     ++ L + FN +   
Sbjct: 57  TFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-Y 113

Query: 64  IPKQLLS-VTTLALLNLSYNRLWGRIPRG 91
           +P  +   V  L +L L  N L   +PRG
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDL-SSLPRG 141

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.5 bits (149), Expect = 1e-11
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           D S N     +         L +L L HN+LT +      N   L  +DLS+N+LE +I 
Sbjct: 217 DASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELE-KIM 270

Query: 66  KQLLS-VTTLALLNLSYNRL 84
                 +  L  L +S NRL
Sbjct: 271 YHPFVKMQRLERLYISNNRL 290

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.9 bits (145), Expect = 4e-11
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 7/81 (8%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKLEGR 63
            L  N     +P+ +  N   L  L++S+N+L   I    F   T+L++L LS N+L   
Sbjct: 129 VLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-H 185

Query: 64  IPKQLLSVTTLALLNLSYNRL 84
           +   L+   +L   N+SYN L
Sbjct: 186 VDLSLI--PSLFHANVSYNLL 204

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.4 bits (141), Expect = 1e-10
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 11/79 (13%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            LSSNR    +   L    SL   N+S+N L+     +     A+E LD S N +   + 
Sbjct: 177 QLSSNRL-THVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVR 227

Query: 66  KQLLSVTTLALLNLSYNRL 84
             +     L +L L +N L
Sbjct: 228 GPVNV--ELTILKLQHNNL 244

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 9/73 (12%), Positives = 24/73 (32%), Gaps = 2/73 (2%)

Query: 13 CGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLS-V 71
             I   L        +++   +           +   + +    + +  ++P  LL   
Sbjct: 16 YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSF 74

Query: 72 TTLALLNLSYNRL 84
            + LLNL+  ++
Sbjct: 75 RQVELLNLNDLQI 87

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.2 bits (169), Expect = 2e-14
 Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 6   DLSSNRFCGEIP----KVLGNFKSLKVLNLSHN---SLTGNIPVSFDNMTALESLDLSFN 58
           DLS N   GE           F +L+VL L +    + +G           L+ LDLS N
Sbjct: 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238

Query: 59  KLEGRIPKQLLS-VTTLALLNLSYNRL 84
            L            + L  LNLS+  L
Sbjct: 239 SLRDAAGAPSCDWPSQLNSLNLSFTGL 265

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.6 bits (165), Expect = 7e-14
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 7/83 (8%)

Query: 6   DLSSNRFC---GEIPKVLGNFKSLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLE 61
            L +       G    +      L+ L+LSHNSL       S D  + L SL+LSF  L+
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

Query: 62  GRIPKQLLSVTTLALLNLSYNRL 84
            ++PK L +   L++L+LSYNRL
Sbjct: 267 -QVPKGLPA--KLSVLDLSYNRL 286

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.7 bits (147), Expect = 2e-11
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 6   DLSSNRFCGEIPKVLGNF-KSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
           DLS N           ++   L  LNLS   L             L  LDLS+N+L+ R 
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLD-RN 289

Query: 65  PKQLLSVTTLALLNLSYNRL 84
           P     +  +  L+L  N  
Sbjct: 290 PS-PDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.8 bits (137), Expect = 4e-10
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 7/95 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS----FDNMTALESLDLSFNKLE 61
            ++         + +  F +L  L+LS N   G   +           L+ L L    +E
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 62  ---GRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQ 93
              G       +   L  L+LS+N L       + 
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.3 bits (120), Expect = 7e-08
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG 62
           +LS      ++PK L     L VL+LS+N L    P S D +  + +L L  N    
Sbjct: 259 NLSFTGL-KQVPKGL--PAKLSVLDLSYNRLDR-NP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 7/74 (9%)

Query: 24  KSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI-------PKQLLSVTTLAL 76
             LKVL+++                AL +LDLS N   G         P +  ++  LAL
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 77  LNLSYNRLWGRIPR 90
            N       G    
Sbjct: 209 RNAGMETPSGVCSA 222

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 7/82 (8%)

Query: 9   SNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMT--ALESLDLSFNKLEGRIPK 66
            +R      +VL     L+ L L +  +TG  P      T   L  L+L       R   
Sbjct: 81  PSRILFGALRVL-GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW 139

Query: 67  ----QLLSVTTLALLNLSYNRL 84
               Q      L +L+++    
Sbjct: 140 LAELQQWLKPGLKVLSIAQAHS 161

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 1/94 (1%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DLS             +   L  L L+ N +      +F  +++L+ L      L     
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFEN 99
             +  + TL  LN+++N +         F+   N
Sbjct: 118 FPIGHLKTLKELNVAHNLI-QSFKLPEYFSNLTN 150

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.3 bits (162), Expect = 3e-13
 Identities = 16/89 (17%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 6   DLSSNRFCGEIPK--VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
           D   +    ++ +  V  + ++L  L++SH          F+ +++LE L ++ N  +  
Sbjct: 402 DFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 64  IPKQLLS-VTTLALLNLSYNRLWGRIPRG 91
               + + +  L  L+LS  +L  ++   
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLE-QLSPT 488

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.5 bits (160), Expect = 5e-13
 Identities = 17/79 (21%), Positives = 33/79 (41%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DLS N           +F  L+VL+LS   +      ++ +++ L +L L+ N ++    
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93

Query: 66  KQLLSVTTLALLNLSYNRL 84
                +++L  L      L
Sbjct: 94  GAFSGLSSLQKLVAVETNL 112

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.1 bits (159), Expect = 8e-13
 Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
            ++ N F       +    ++L  L+LS   L    P +F+++++L+ L+++ N+L+  +
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SV 509

Query: 65  PKQLL-SVTTLALLNLSYNRL 84
           P  +   +T+L  + L  N  
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 3e-12
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 6   DLSSNR--FCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
           DLS N   F G   +      SLK L+LS N +   +  +F  +  LE LD   + L+ +
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-Q 410

Query: 64  IPKQ--LLSVTTLALLNLSYNRL 84
           + +    LS+  L  L++S+   
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHT 433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 6  DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
                F  +IP  L    S K L+LS N L      SF +   L+ LDLS  +++    
Sbjct: 13 QCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 66 KQLLSVTTLALLNLSYNRL 84
              S++ L+ L L+ N +
Sbjct: 70 GAYQSLSHLSTLILTGNPI 88

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 8e-11
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 6   DLSSNRF-CGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALE----SLDLSFNKL 60
           +++ N     ++P+   N  +L+ L+LS N +          +  +     SLDLS N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 61  EGRIPKQLLSVTTLALLNLSYNRLWGRIPRG 91
              I         L  L L  N     + + 
Sbjct: 190 N-FIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.0 bits (130), Expect = 5e-09
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 7/81 (8%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE--GR 63
           +L + +F  + P +    KSLK L  + N    N   S  ++ +LE LDLS N L   G 
Sbjct: 310 ELVNCKFG-QFPTL--KLKSLKRLTFTSNKGG-NAF-SEVDLPSLEFLDLSRNGLSFKGC 364

Query: 64  IPKQLLSVTTLALLNLSYNRL 84
             +     T+L  L+LS+N +
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGV 385

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 10/108 (9%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKV----LNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
           DLSSN+        L     + +    L+LS N +    P +F  +  L  L L  N   
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDS 213

Query: 62  GRIPKQLLSVTTLALLNLSYNRLW-GRIPRGNQFNTFENDSYIGNIHL 108
             + K  +      L  L  +RL  G          F+  +  G  +L
Sbjct: 214 LNVMKTCIQ----GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.9 bits (169), Expect = 3e-14
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 6  DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           ++ +     +  +  +  ++K L+LS N L+          T LE L+LS N L     
Sbjct: 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TL 74

Query: 66 KQLLSVTTLALLNLSYNRL 84
            L S++TL  L+L+ N +
Sbjct: 75 -DLESLSTLRTLDLNNNYV 92

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 21/69 (30%), Positives = 31/69 (44%)

Query: 16 IPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLA 75
          I ++  N    K+  ++ +SL   +     +   ++ LDLS N L       L   T L 
Sbjct: 2  IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 76 LLNLSYNRL 84
          LLNLS N L
Sbjct: 62 LLNLSSNVL 70

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 4/107 (3%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DLSSN+    +     +   +  ++L +N L   I  +      LE  DL  N       
Sbjct: 197 DLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGT 253

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEP 112
            +        +  ++   +     +  +  T     + G    C + 
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY-CCEDL 299

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.4 bits (160), Expect = 4e-13
 Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 10/116 (8%)

Query: 6   DLSSNRFCG-EIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
           DL  N        ++  +  +L+ LNL +N +  ++         L++LDLS NKL   +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FM 206

Query: 65  PKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSND 120
             +  S   +  ++L  N+L   I              + +  L G         D
Sbjct: 207 GPEFQSAAGVTWISLRNNKL-VLIE-----KALRFSQNLEHFDLRGNGFHCGTLRD 256

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.0 bits (159), Expect = 5e-13
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
             ++N     +       +  K + L++N +T    +     + ++ LDL  N+++  + 
Sbjct: 105 HAANNNI-SRVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVN 160

Query: 66  KQLL--SVTTLALLNLSYNRL 84
              L  S  TL  LNL YN +
Sbjct: 161 FAELAASSDTLEHLNLQYNFI 181

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.2 bits (144), Expect = 6e-11
 Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 26/115 (22%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           +LSSN    E    L +  +L+ L+L++N +            ++E+L  + N +  R+ 
Sbjct: 64  NLSSNVL-YETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVS 115

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRG---------------NQFNTFENDSYIGN 105
                      + L+ N++   +                  N+ +T        +
Sbjct: 116 CSRG--QGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.1 bits (169), Expect = 3e-14
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 6  DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           ++ +     +  +  +  ++K L+LS N L+          T LE L+LS N L   + 
Sbjct: 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75

Query: 66 KQLLSVTTLALLNLSYNRL 84
            L S++TL  L+L+ N +
Sbjct: 76 --LESLSTLRTLDLNNNYV 92

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.2 bits (164), Expect = 2e-13
 Identities = 21/69 (30%), Positives = 31/69 (44%)

Query: 16 IPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLA 75
          I ++  N    K+  ++ +SL   +     +   ++ LDLS N L       L   T L 
Sbjct: 2  IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 76 LLNLSYNRL 84
          LLNLS N L
Sbjct: 62 LLNLSSNVL 70

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.6 bits (160), Expect = 5e-13
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
             ++N     +       +  K + L++N +T    +     + ++ LDL  N+++    
Sbjct: 105 HAANNNI-SRVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 66  KQLLS-VTTLALLNLSYNRL 84
            +L +   TL  LNL YN +
Sbjct: 162 AELAASSDTLEHLNLQYNFI 181

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.6 bits (160), Expect = 6e-13
 Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 3/103 (2%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DLSSN+    +     +   +  ++L +N L   I  +      LE  DL  N       
Sbjct: 197 DLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHL 108
           +   S     +  ++   +     +  +  T     + G    
Sbjct: 255 RDFFS-KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.3 bits (159), Expect = 6e-13
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 10/120 (8%)

Query: 6   DLSSNRFCG-EIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
           DL  N        ++  +  +L+ LNL +N +  ++         L++LDLS NKL   +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FM 206

Query: 65  PKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDAVPK 124
             +  S   +  ++L  N+L   I              + +  L G         D   K
Sbjct: 207 GPEFQSAAGVTWISLRNNKL-VLIE-----KALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.2 bits (146), Expect = 4e-11
 Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 9/94 (9%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DL++N       + L    S++ L+ ++N+++    VS       +++ L+ NK+     
Sbjct: 86  DLNNNYV-----QELLVGPSIETLHAANNNISR---VSCSRGQGKKNIYLANNKITMLRD 137

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFEN 99
                 + +  L+L  N +   +       + + 
Sbjct: 138 LDEGCRSRVQYLDLKLNEI-DTVNFAELAASSDT 170

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 26/115 (22%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           +LSSN    E    L +  +L+ L+L++N +            ++E+L  + N +  R+ 
Sbjct: 64  NLSSNVL-YETL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVS 115

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRG---------------NQFNTFENDSYIGN 105
                      + L+ N++   +                  N+ +T        +
Sbjct: 116 CSRG--QGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 6/98 (6%), Positives = 20/98 (20%), Gaps = 4/98 (4%)

Query: 5   TDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
                +     +     N    + ++         I        A  +L+     L+ ++
Sbjct: 318 LSGQGSET-ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQV 376

Query: 65  P---KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFEN 99
               +    +       +    L       +       
Sbjct: 377 SNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRA 414

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.4 bits (168), Expect = 4e-14
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 3/84 (3%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           +L S     + P        L+ + +    L   +P +      LE+L L+ N L   +P
Sbjct: 87  ELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALP 143

Query: 66  KQLLSVTTLALLNLSYNRLWGRIP 89
             + S+  L  L++        +P
Sbjct: 144 ASIASLNRLRELSIRACPELTELP 167

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.1 bits (162), Expect = 2e-13
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 11/88 (12%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLS-FNKLE--- 61
            + +     E+P  +  F  L+ L L+ N L   +P S  ++  L  L +    +L    
Sbjct: 110 TIDAAGL-MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP 167

Query: 62  -----GRIPKQLLSVTTLALLNLSYNRL 84
                     +   +  L  L L +  +
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGI 195

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.4 bits (160), Expect = 5e-13
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 4/81 (4%)

Query: 6   DLSSNRFCGEIPKVLGNFKS--LKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
           +  + R       +L +        L L    L    P     ++ L+ + +    L   
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 64  IPKQLLSVTTLALLNLSYNRL 84
           +P  +     L  L L+ N L
Sbjct: 119 LPDTMQQFAGLETLTLARNPL 139

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.0 bits (154), Expect = 3e-12
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLS-FNKLEGRI 64
            L        +P  + N ++LK L + ++ L+  +  +  ++  LE LDL     L    
Sbjct: 189 RLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRN-Y 245

Query: 65  PKQLLSVTTLALLNLS-YNRL 84
           P        L  L L   + L
Sbjct: 246 PPIFGGRAPLKRLILKDCSNL 266

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 11/88 (12%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSF---------DNMTALESLDLS 56
            L+ N     +P  + +   L+ L++        +P              +  L+SL L 
Sbjct: 133 TLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191

Query: 57  FNKLEGRIPKQLLSVTTLALLNLSYNRL 84
           +  +   +P  + ++  L  L +  + L
Sbjct: 192 WTGIR-SLPASIANLQNLKSLKIRNSPL 218

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 3/85 (3%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLS-FNKLEGRI 64
            + ++     +   + +   L+ L+L   +   N P  F     L+ L L   + L   +
Sbjct: 212 KIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TL 269

Query: 65  PKQLLSVTTLALLNLSYNRLWGRIP 89
           P  +  +T L  L+L       R+P
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSH-NSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
           DL         P + G    LK L L   ++L   +P+    +T LE LDL       R+
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 65  PKQLLSVTTLALLNLSYNRL 84
           P  +  +    ++ +  +  
Sbjct: 294 PSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 7/67 (10%), Positives = 19/67 (28%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L        +P  +     L+ L+L        +P     + A   + +  +       
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

Query: 66  KQLLSVT 72
            + ++  
Sbjct: 319 HRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 10/101 (9%), Positives = 25/101 (24%), Gaps = 24/101 (23%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLN--------------------LSHNSLTGNIPVSFD 45
               +        VL  ++     +                     +  +L        +
Sbjct: 18  YFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK-ATADLLE 76

Query: 46  N--MTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRL 84
           +       +L+L    L  + P Q   ++ L  + +    L
Sbjct: 77  DATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL 116

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 68.7 bits (168), Expect = 5e-14
 Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 16/130 (12%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DLS         +V    K LKVLNL++N +      +F  +  L+ L+LS+N L     
Sbjct: 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRG---------------NQFNTFENDSYIGNIHLCG 110
                +  +A ++L  N +   I                  N   T      I +I L G
Sbjct: 332 SNFYGLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390

Query: 111 EPLTVTCSND 120
             L      +
Sbjct: 391 NKLVTLPKIN 400

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.8 bits (158), Expect = 9e-13
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 6   DLSSNRFCGEI-PKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
           +L S      I  +   N  +L++L+L  + +    P +F  +  L  L L F  L   +
Sbjct: 54  ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113

Query: 65  --PKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFEN 99
                  ++  L  L+LS N++   +     F    +
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQI-RSLYLHPSFGKLNS 149

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 9/102 (8%)

Query: 6   DLSSNRFCGEI--PKVLGNFKSLKVLNLSHNSLTG-NIPVSFDNMTALESLDLSFNKLEG 62
            L        +       N K+L  L+LS N +    +  SF  + +L+S+D S N++  
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF- 161

Query: 63  RIPKQL---LSVTTLALLNLSYNRLWGRIPRG--NQFNTFEN 99
            + +     L   TL+  +L+ N L+ R+        N F N
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.6 bits (147), Expect = 3e-11
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 6   DLSSNRF----CGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
            L  N        E+   V      L+VL L+HN L    P  F ++TAL  L L+ N+L
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

Query: 61  EGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLC 109
              +    L    L +L++S N+L    P  + F +        N  +C
Sbjct: 517 T-VLSHNDLP-ANLEILDISRNQL--LAPNPDVFVSLSVLDITHNKFIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.4 bits (144), Expect = 8e-11
 Identities = 29/138 (21%), Positives = 45/138 (32%), Gaps = 24/138 (17%)

Query: 6   DLSSNRFCG-EIPKVLGNFKSLKVLNLSHNSLTGNIPVS-----FDNMTALESLDLSFNK 59
            L+ NRF      +      SL+ L L  N L            F+ ++ L+ L L+ N 
Sbjct: 432 ILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491

Query: 60  LEGRIPKQLLSVTT-LALLNLSYNRLWGRIP-------------RGNQFNTFENDS--YI 103
           L   +P  + S  T L  L+L+ NRL   +                NQ      D    +
Sbjct: 492 LN-SLPPGVFSHLTALRGLSLNSNRL-TVLSHNDLPANLEILDISRNQLLAPNPDVFVSL 549

Query: 104 GNIHLCGEPLTVTCSNDA 121
             + +        C    
Sbjct: 550 SVLDITHNKFICECELST 567

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 7  LSSNRFCG--EIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
          ++  RFC   ++P+VL    + + L LS N +      SF  +  L+ L+L        I
Sbjct: 8  IAFYRFCNLTQVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 65 PKQLL-SVTTLALLNLSYNRLWGRIPRG 91
           K+   ++  L +L+L  ++++  +   
Sbjct: 65 DKEAFRNLPNLRILDLGSSKIY-FLHPD 91

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.4 bits (136), Expect = 9e-10
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 6   DLSSNRFCGEIPKVLGNFK--SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
               +                S++ L+LSH  +       F+ +  L+ L+L++NK+   
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305

Query: 64  IPKQLLSVTTLALLNLSYNRL 84
             +    +  L +LNLSYN L
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLL 326

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 6   DLSSNRFCG-EIPKVLGNFKSLKVLNLSHNSLTG-NIPVSFDNMTALESLDLSFNKLEGR 63
            LS NR    +I   L     L++L L+ N  +  +   +     +LE L L  N L+  
Sbjct: 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466

Query: 64  IPKQLLS-----VTTLALLNLSYNRL 84
              +L       ++ L +L L++N L
Sbjct: 467 WETELCWDVFEGLSHLQVLYLNHNYL 492

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.6 bits (121), Expect = 7e-08
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSF-DNMTALESLDLSFNKLEGRI 64
            LS N+    +PK      +  +++LS N L     + F   +  L+ L L+ N+     
Sbjct: 387 FLSGNKL-VTLPK---INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442

Query: 65  PKQLLSV-TTLALLNLSYNRLWGRIPRGNQFNTFEN 99
             Q  S   +L  L L  N L         ++ FE 
Sbjct: 443 GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG 478

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 22/104 (21%)

Query: 2   FRATDLSSNRFCGEIPKVLGN------FKSLKVLNLSHNSLTGNIPVSFDN--------- 46
                L++N     +    G          L++L++S N  T +I  +F N         
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235

Query: 47  ---MTALESLDLSFNKLEGRIPK---QLLSVTTLALLNLSYNRL 84
                 +      F+ ++    +     L+ +++  L+LS+  +
Sbjct: 236 LILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFV 278

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.3 bits (165), Expect = 8e-14
 Identities = 27/115 (23%), Positives = 40/115 (34%), Gaps = 8/115 (6%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLEGR 63
            L  N+    I    L  +  L  L L HN +   I   S   +  L  L L  NKL  R
Sbjct: 199 HLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-R 255

Query: 64  IPKQLLSVTTLALLNLSYNRLWGRIPRG--NQFNTFENDSYIGNIHLCGEPLTVT 116
           +P  L  +  L ++ L  N +  ++              +Y   I L   P+   
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNI-TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLEGR 63
           DL +N    E+ K      + L  L L +N ++  I   +F  +  L+ L +S N L   
Sbjct: 60  DLQNNDI-SELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-E 116

Query: 64  IPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVT 116
           IP  L S  +L  L +  NR+  ++P+G     F     +  I + G PL  +
Sbjct: 117 IPPNLPS--SLVELRIHDNRI-RKVPKG----VFSGLRNMNCIEMGGNPLENS 162

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 8/88 (9%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLEGRI 64
            +S  +    IPK     ++L  L+L HN +   I +      + L  L L  N++   I
Sbjct: 178 RISEAKL-TGIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MI 232

Query: 65  PKQLLS-VTTLALLNLSYNRLWGRIPRG 91
               LS + TL  L+L  N+L  R+P G
Sbjct: 233 ENGSLSFLPTLRELHLDNNKL-SRVPAG 259

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 8e-08
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 3   RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG 62
           R    S       +PK +       +L+L +N ++      F  +  L +L L  NK+  
Sbjct: 36  RVVQCSDLGL-KAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 63  RIPKQLLSVTTLALLNLSYNRLWGRIPRG 91
              K    +  L  L +S N L   IP  
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHL-VEIPPN 120

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 11/87 (12%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS-------FDNMTALESLDLSFN 58
            L +N+    +P  L + K L+V+ L  N++T  + V+                + L  N
Sbjct: 247 HLDNNKL-SRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNN 304

Query: 59  KLE-GRIPKQLLS-VTTLALLNLSYNR 83
            +    +       VT    +     +
Sbjct: 305 PVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L  N    +    L N+  L  ++LS+N L   +   F  M  LE L +S N+L   + 
Sbjct: 232 KLQHNNL-TDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALN 288

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRG 91
                + TL +L+LS+N L   + R 
Sbjct: 289 LYGQPIPTLKVLDLSHNHL-LHVERN 313

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIP-VSFDNMTALESLDLSFNKLEGR 63
              ++    ++P  +L +F+ +++LNL+   +   I   +F     ++ L + FN +   
Sbjct: 51  TFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-Y 107

Query: 64  IPKQLLS-VTTLALLNLSYNRLWGRIPRG 91
           +P  +   V  L +L L  N L   +PRG
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDL-SSLPRG 135

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           D S N     +         L +L L HN+LT +      N   L  +DLS+N+LE +I 
Sbjct: 211 DASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELE-KIM 264

Query: 66  KQLLS-VTTLALLNLSYNRL 84
                 +  L  L +S NRL
Sbjct: 265 YHPFVKMQRLERLYISNNRL 284

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 7/81 (8%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKLEGR 63
            L  N     +P+ +  N   L  L++S+N+L   I    F   T+L++L LS N+L   
Sbjct: 123 VLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-H 179

Query: 64  IPKQLLSVTTLALLNLSYNRL 84
           +   L+   +L   N+SYN L
Sbjct: 180 VDLSLI--PSLFHANVSYNLL 198

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 11/79 (13%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            LSSNR    +   L    SL   N+S+N L+     +     A+E LD S N +   + 
Sbjct: 171 QLSSNRL-THVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVR 221

Query: 66  KQLLSVTTLALLNLSYNRL 84
             +     L +L L +N L
Sbjct: 222 GPVNV--ELTILKLQHNNL 238

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 10/84 (11%), Positives = 25/84 (29%), Gaps = 3/84 (3%)

Query: 9  SNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQL 68
                 I   L        +++   +           +   + +    + +  ++P  L
Sbjct: 6  RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAAL 64

Query: 69 LS-VTTLALLNLSYNRLWGRIPRG 91
          L     + LLNL+  ++   I   
Sbjct: 65 LDSFRQVELLNLNDLQI-EEIDTY 87

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 65.3 bits (159), Expect = 7e-13
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           ++S N         + +   L++L +SHN +       F     LE LDLS NKL   I 
Sbjct: 27  NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-IS 85

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQF 94
                   L  L+LS+N     +P   +F
Sbjct: 86  CHPT--VNLKHLDLSFNAF-DALPICKEF 111

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.2 bits (138), Expect = 4e-10
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 27/136 (19%)

Query: 6   DLSSNRFCGEIPKVLGNF---KSLKVLNLSHNSLTGNIP-VSFDNMTALESLDLSFNKLE 61
            L  N+   E+ K+       KSL+ L++S NS++ +          +L SL++S N L 
Sbjct: 354 ILQMNQL-KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

Query: 62  GRIPKQLLSVTTLALLNLSYNRLWGRIPRG--------------NQF-----NTFENDSY 102
             I + L     + +L+L  N++   IP+               NQ        F+  + 
Sbjct: 413 DTIFRCLPP--RIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469

Query: 103 IGNIHLCGEPLTVTCS 118
           +  I L   P   +C 
Sbjct: 470 LQKIWLHTNPWDCSCP 485

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.5 bits (131), Expect = 3e-09
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 6  DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
          D S N     +PK     +   +LN+S N ++        +++ L  L +S N+++    
Sbjct: 6  DRSKNGLI-HVPK--DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 66 KQLLSVTTLALLNLSYNRL 84
                  L  L+LS+N+L
Sbjct: 63 SVFKFNQELEYLDLSHNKL 81

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.5 bits (131), Expect = 4e-09
 Identities = 15/79 (18%), Positives = 30/79 (37%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            + S+ F      +   F ++ + N + +       +    ++    LD S N L   + 
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341

Query: 66  KQLLSVTTLALLNLSYNRL 84
           +    +T L  L L  N+L
Sbjct: 342 ENCGHLTELETLILQMNQL 360

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.7 bits (129), Expect = 6e-09
 Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE--GR 63
           + + +                  L+ S+N LT  +  +  ++T LE+L L  N+L+   +
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365

Query: 64  IPKQLLSVTTLALLNLSYNRLWGRIPRGN 92
           I +    + +L  L++S N +     +G+
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.8 bits (124), Expect = 3e-08
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS--FDNMTALESLDLSFNKLEGR 63
           DLS N+   +I        +LK L+LS N+    +P+   F NM+ L+ L LS   LE  
Sbjct: 75  DLSHNKL-VKIS--CHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKS 130

Query: 64  IPKQLLSVTTLALLNLSYNRLWGRIPRGN 92
               +  +    +L +       +     
Sbjct: 131 SVLPIAHLNISKVLLVLGETYGEKEDPEG 159

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 3/115 (2%)

Query: 6   DLSSNRF-CGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
           DLS N F    I K  GN   LK L LS   L  +  +   ++   + L +       + 
Sbjct: 96  DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKE 155

Query: 65  PKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSN 119
             + L        +L       +        + +  + +   ++        CS 
Sbjct: 156 DPEGLQ--DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 7/78 (8%), Positives = 23/78 (29%)

Query: 7   LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
           L       +      + K+L +  +  +         ++  + +   + + +        
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318

Query: 67  QLLSVTTLALLNLSYNRL 84
               ++    L+ S N L
Sbjct: 319 CPSKISPFLHLDFSNNLL 336

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.7 bits (156), Expect = 2e-12
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           ++ SN+       VL N   L  L L++N L          +T L +L LS N +    P
Sbjct: 271 NVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

Query: 66  KQLLSVTTLALLNLSYNRL 84
             L S++ +   + +   +
Sbjct: 329 --LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.7 bits (156), Expect = 2e-12
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           +L +N         L N   L  L ++ + +    P    N+T L SL L++N++E   P
Sbjct: 138 NLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194

Query: 66  KQLLSVTTLALLNLSYNRL 84
             L S+T+L       N++
Sbjct: 195 --LASLTSLHYFTAYVNQI 211

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.3 bits (155), Expect = 2e-12
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           +L+ N+     P  L N   L  L +  N +T +I  +  N+T L  L L+ + +    P
Sbjct: 72  NLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS-ALQNLTNLRELYLNEDNISDISP 127

Query: 66  KQLLSVTTLALLNLSYNRL 84
             L ++T +  LNL  N  
Sbjct: 128 --LANLTKMYSLNLGANHN 144

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.6 bits (153), Expect = 4e-12
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 5/79 (6%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L+ +      P  L N   +  LNL  N    ++     NMT L  L ++ +K++   P
Sbjct: 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP 172

Query: 66  KQLLSVTTLALLNLSYNRL 84
             + ++T L  L+L+YN++
Sbjct: 173 --IANLTDLYSLSLNYNQI 189

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 2e-11
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            + +N+     P  L N   L  L +  N ++ +I  +  ++T L+ L++  N++     
Sbjct: 227 KIGNNKITDLSP--LANLSQLTWLEIGTNQIS-DIN-AVKDLTKLKMLNVGSNQISD--I 280

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPR 90
             L +++ L  L L+ N+L      
Sbjct: 281 SVLNNLSQLNSLFLNNNQLGNEDME 305

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.1 bits (144), Expect = 7e-11
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L+ N+     P  L +  SL       N +T   P    NMT L SL +  NK+    P
Sbjct: 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238

Query: 66  KQLLSVTTLALLNLSYNRL 84
             L +++ L  L +  N++
Sbjct: 239 --LANLSQLTWLEIGTNQI 255

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            ++  +    I   +    +L+ LNL+ N +T   P    N+  L +L +  NK+     
Sbjct: 50  VVAGEKV-ASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DI 103

Query: 66  KQLLSVTTLALLNLSYNRL 84
             L ++T L  L L+ + +
Sbjct: 104 SALQNLTNLRELYLNEDNI 122

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
            L++N+   E  +V+G   +L  L LS N +T   P    +++ ++S D +   ++
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 6  DLSSNRFCGEIPKV--LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
                    I ++    +        L   S+T    V+ + + ++  L ++  K+   
Sbjct: 6  ATLPA----PINQIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVASI 59

Query: 64 IPKQLLSVTTLALLNLSYNRL 84
             + L  T L  LNL+ N++
Sbjct: 60 QGIEYL--TNLEYLNLNGNQI 78

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
                    +    +    +L  +N S+N LT   P    N+T L  + ++ N++    P
Sbjct: 52  QADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 107

Query: 66  KQLLSVTTLALLNLSYNRL 84
             L ++T L  L L  N++
Sbjct: 108 --LANLTNLTGLTLFNNQI 124

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.3 bits (152), Expect = 6e-12
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           + S+N+     P  L N   L  + +++N +    P    N+T L  L L  N++    P
Sbjct: 74  NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP 129

Query: 66  KQLLSVTTLALLNLSYNRL 84
            + L  T L  L LS N +
Sbjct: 130 LKNL--TNLNRLELSSNTI 146

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.3 bits (152), Expect = 7e-12
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           +L+ N+     P  + N K+L  L L  N+++   PVS  ++T L+ L    NK+     
Sbjct: 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD--V 346

Query: 66  KQLLSVTTLALLNLSYNRL 84
             L ++T +  L+  +N++
Sbjct: 347 SSLANLTNINWLSAGHNQI 365

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           D+SSN+       VL    +L+ L  ++N ++   P     +T L+ L L+ N+L+    
Sbjct: 183 DISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--I 236

Query: 66  KQLLSVTTLALLNLSYNRL 84
             L S+T L  L+L+ N++
Sbjct: 237 GTLASLTNLTDLDLANNQI 255

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L +N+     P  L    +L  L L+ N L    P    N+  L  L L FN +    P
Sbjct: 271 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326

Query: 66  KQLLSVTTLALLNLSYNRL 84
             + S+T L  L    N++
Sbjct: 327 --VSSLTKLQRLFFYNNKV 343

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.8 bits (143), Expect = 9e-11
 Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L        +     +   +  L      +  +I    + +  L  ++ S N+L    P
Sbjct: 30  VLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP 85

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGN 92
             L ++T L  + ++ N++    P  N
Sbjct: 86  --LKNLTKLVDILMNNNQIADITPLAN 110

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L+ N+   +    L +  +L  L+L++N ++   P     +T L  L L  N++    P
Sbjct: 227 SLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282

Query: 66  KQLLSVTTLALLNLSYNRL 84
             L  +T L  L L+ N+L
Sbjct: 283 --LAGLTALTNLELNENQL 299

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            +++N+     P  L N  +L  L L +N +T   P    N+T L  L+LS N +     
Sbjct: 96  LMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--I 149

Query: 66  KQLLSVTTLALLNLSYN 82
             L  +T+L  L+    
Sbjct: 150 SALSGLTSLQQLSFGNQ 166

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
              +N+        L N  ++  L+  HN ++   P++  N+T +  L L+         
Sbjct: 337 FFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPV 392

Query: 66  KQLLSVTTLALLNLSYN 82
                   +++ N   N
Sbjct: 393 NYK---ANVSIPNTVKN 406

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.4 bits (129), Expect = 6e-09
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           +LSSN         L    SL+ L+  +  +T   P    N+T LE LD+S NK+     
Sbjct: 140 ELSSNTISD--ISALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERLDISSNKVSD--I 192

Query: 66  KQLLSVTTLALLNLSYNRL 84
             L  +T L  L  + N++
Sbjct: 193 SVLAKLTNLESLIATNNQI 211

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 5e-08
 Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 4/65 (6%)

Query: 20 LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79
                     L   ++T  +  +  ++  + +L      ++      +  +  L  +N 
Sbjct: 20 DTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK--SIDGVEYLNNLTQINF 75

Query: 80 SYNRL 84
          S N+L
Sbjct: 76 SNNQL 80

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 4/79 (5%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
               N+     P  L N   +  L L+  + T        N++   ++      L    P
Sbjct: 359 SAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--AP 414

Query: 66  KQLLSVTTLALLNLSYNRL 84
             +    +    ++++N  
Sbjct: 415 ATISDGGSYTEPDITWNLP 433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
            L  N+   ++    L    +L  L LS NS++     S  N   L  L L+ NKL  ++
Sbjct: 198 HLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255

Query: 65  PKQLLSVTTLALLNLSYNRL 84
           P  L     + ++ L  N +
Sbjct: 256 PGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKL-EGR 63
            LS N+   E+P+ +   K+L+ L +  N +T  +    F+ +  +  ++L  N L    
Sbjct: 106 YLSKNQL-KELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSG 161

Query: 64  IPKQLLS-VTTLALLNLSYNRLWGRIPRG 91
           I       +  L+ + ++   +   IP+G
Sbjct: 162 IENGAFQGMKKLSYIRIADTNI-TTIPQG 189

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLT-GNIPV-SFDNMTALESLDLSFNKLEG 62
            +  N    ++ K V      + V+ L  N L    I   +F  M  L  + ++   +  
Sbjct: 127 RVHENEI-TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184

Query: 63  RIPKQLLSVTTLALLNLSYNRLWGRIPRG 91
            IP+ L    +L  L+L  N++  ++   
Sbjct: 185 TIPQGLPP--SLTELHLDGNKI-TKVDAA 210

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 11/87 (12%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS-------FDNMTALESLDLSFN 58
            L++N+   ++P  L + K ++V+ L +N+++  I  +            +   + L  N
Sbjct: 246 HLNNNKL-VKVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSN 303

Query: 59  KLE-GRIPKQLLS-VTTLALLNLSYNR 83
            ++   I       V   A + L   +
Sbjct: 304 PVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 3   RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG 62
           R    S      ++PK L       +L+L +N +T      F N+  L +L L  NK+  
Sbjct: 34  RVVQCSDLGL-EKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 63  RIPKQLLSVTTLALLNLSYNRLWGRIPRG 91
             P     +  L  L LS N+L   +P  
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQL-KELPEK 118

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 5   TDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLT-GNI-PVSFDNMTALESLDLSFNK 59
           + + SN FC   P       S   ++L  N +    I P +F  +    ++ L   K
Sbjct: 276 SAIGSNDFCP--PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 3e-12
 Identities = 13/77 (16%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            +++          +    +L+ L +    +T +   +   +T+L  LD+S +  +  I 
Sbjct: 72  TINNIHA-TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 66  KQLLSVTTLALLNLSYN 82
            ++ ++  +  ++LSYN
Sbjct: 130 TKINTLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.7 bits (148), Expect = 5e-12
 Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            +       +    L    SL +L++SH++   +I    + +  + S+DLS+N     I 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI- 152

Query: 66  KQLLSVTTLALLNLSYNRL 84
             L ++  L  LN+ ++ +
Sbjct: 153 MPLKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.0 bits (128), Expect = 4e-09
 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 20  LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79
           +    ++K L +++   T   P+S   ++ LE L +    +       L  +T+L LL++
Sbjct: 62  IEYAHNIKDLTINNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 80  SYNRL 84
           S++  
Sbjct: 120 SHSAH 124

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
           DLS N    +I   L     LK LN+  + +  +     ++   L  L      +
Sbjct: 142 DLSYNGAITDI-MPLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 8/64 (12%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 21  GNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80
               SL  + L++ ++T ++    +    ++ L ++        P  +  ++ L  L + 
Sbjct: 41  AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIM 96

Query: 81  YNRL 84
              +
Sbjct: 97  GKDV 100

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 11/66 (16%)

Query: 22 NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNK---LEGRIPKQLLSVTTLALLN 78
           FK+     L  +S      ++   M +L  + L+      L G     +     +  L 
Sbjct: 21 TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTG-----IEYAHNIKDLT 72

Query: 79 LSYNRL 84
          ++    
Sbjct: 73 INNIHA 78

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 61.5 bits (150), Expect = 3e-12
 Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 8/114 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L  N+F   +PK L N+K L +++LS+N ++     SF NMT L +L LS+N+L   IP
Sbjct: 37  YLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIP 94

Query: 66  KQLL-SVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118
            +    + +L LL+L  N +   +P G     F + S + ++ +   PL   C+
Sbjct: 95  PRTFDGLKSLRLLSLHGNDI-SVVPEG----AFNDLSALSHLAIGANPLYCDCN 143

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 63.2 bits (154), Expect = 3e-12
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
            L        IP   L +   L VL L H ++      SF  +  L+ L++S       +
Sbjct: 158 TLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 65  PKQLLSVTTLALLNLSYNRLWGRIPRG 91
               L    L  L++++  L   +P  
Sbjct: 217 TPNCLYGLNLTSLSITHCNL-TAVPYL 242

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.0 bits (151), Expect = 7e-12
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 9/115 (7%)

Query: 6   DLSSNRFCGEIP-KVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
            ++       +P   + +   L+ LNLS+N ++         +  L+ + L   +L   +
Sbjct: 230 SITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VV 287

Query: 65  PKQLLS-VTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118
                  +  L +LN+S N+L   +        F +   +  + L   PL   C 
Sbjct: 288 EPYAFRGLNYLRVLNVSGNQL-TTLEES----VFHSVGNLETLILDSNPLACDCR 337

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.0 bits (143), Expect = 9e-11
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
            L SNR    IP  V     +L  L++S N +   +   F ++  L+SL++  N L   I
Sbjct: 86  GLRSNRL-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YI 143

Query: 65  PKQLLS-VTTLALLNLSYNRLWGRIPRG 91
             +  S + +L  L L    L   IP  
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLT-SIPTE 170

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 3  RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG 62
          RA      RF   +P+ +      ++L+L  N +       F +   LE L+L+ N +  
Sbjct: 14 RAVLCHRKRF-VAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 63 RIPKQLLSVTTLALLNLSYNRLWGRIPRG 91
            P    ++  L  L L  NRL   IP G
Sbjct: 71 VEPGAFNNLFNLRTLGLRSNRL-KLIPLG 98

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.2 bits (128), Expect = 8e-09
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 4/88 (4%)

Query: 6   DLSSNRFCGEIP-KVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
           ++  N     I  +      SL+ L L   +LT     +  ++  L  L L    +   I
Sbjct: 134 EVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AI 191

Query: 65  PKQLLS-VTTLALLNLSYNRLWGRIPRG 91
                  +  L +L +S+      +   
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPN 219

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 62.3 bits (152), Expect = 6e-12
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 20/94 (21%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPV---------------SFDNMTAL 50
             S N    E+P++  + KSL V N +  +L+   P+                  N + L
Sbjct: 97  VASCNSL-TELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFL 155

Query: 51  ESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRL 84
           + +D+  N L+ ++P       +L  +    N+L
Sbjct: 156 KIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQL 185

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.2 bits (144), Expect = 7e-11
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 8/79 (10%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            +S+N+   ++P  L N   LK++++ +NSL   +P   D   +LE +    N+LE  +P
Sbjct: 137 GVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLP---DLPPSLEFIAAGNNQLE-ELP 189

Query: 66  KQLLSVTTLALLNLSYNRL 84
            +L ++  L  +    N L
Sbjct: 190 -ELQNLPFLTAIYADNNSL 207

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
              +N+   E+P+ L N   L  +   +NSL   +P    +   LES+    N LE    
Sbjct: 179 AAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNILE--EL 230

Query: 66  KQLLSVTTLALLNLSYNRL 84
            +L ++  L  +    N L
Sbjct: 231 PELQNLPFLTTIYADNNLL 249

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 7/79 (8%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
              +N    E    L N   L  +   +N L   +P    +   LE+L++  N L   +P
Sbjct: 221 VAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LEALNVRDNYLT-DLP 273

Query: 66  KQLLSVTTLALLNLSYNRL 84
           +   S+T L +    ++ L
Sbjct: 274 ELPQSLTFLDVSENIFSGL 292

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 18/97 (18%)

Query: 6   DLSSNRFCGEIPKVLGN-------------FKSLKVLNLSHNSLTGNIPVSFDNMTALES 52
             + + +    P   G               +    L L++  L+ ++P    +   LES
Sbjct: 40  YNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPH---LES 95

Query: 53  LDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIP 89
           L  S N L   +P+   S+ +L + N +   L    P
Sbjct: 96  LVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP 131

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 12/79 (15%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           + SSN     I  +     SL+ LN+S+N L   +P        LE L  SFN L   +P
Sbjct: 303 NASSNE----IRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVP 353

Query: 66  KQLLSVTTLALLNLSYNRL 84
           +       L  L++ YN L
Sbjct: 354 ELP---QNLKQLHVEYNPL 369

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 12/79 (15%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           ++  N    ++P++  +   L V     + L+   P        L  L+ S N++   + 
Sbjct: 263 NVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR-SLC 313

Query: 66  KQLLSVTTLALLNLSYNRL 84
               S+     LN+S N+L
Sbjct: 314 DLPPSLEE---LNVSNNKL 329

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 17/92 (18%), Positives = 25/92 (27%), Gaps = 18/92 (19%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDN-------------MTALES 52
              S+    E+P    N KS      + +    N P                        
Sbjct: 17  LRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75

Query: 53  LDLSFNKLEGRIPKQLLSVTTLALLNLSYNRL 84
           L+L+   L   +P+       L  L  S N L
Sbjct: 76  LELNNLGLS-SLPELP---PHLESLVASCNSL 103

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 25/95 (26%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMT----------------A 49
             S N    E+P++  N   LK L++ +N L    P   +++                  
Sbjct: 343 IASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQN 397

Query: 50  LESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRL 84
           L+ L +  N L    P    S   +  L ++  R+
Sbjct: 398 LKQLHVETNPLR-EFPDIPES---VEDLRMNSERV 428

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 7/80 (8%)

Query: 5   TDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
            DL  N    E+P++  N   LK L++  N L    P   D   ++E L ++  ++    
Sbjct: 380 EDLRMNSHLAEVPELPQN---LKQLHVETNPLR-EFP---DIPESVEDLRMNSERVVDPY 432

Query: 65  PKQLLSVTTLALLNLSYNRL 84
                +   L      ++  
Sbjct: 433 EFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 15/81 (18%)

Query: 17 PKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLAL 76
          P+ + N   L+      ++LT  +PV  +N+ +      ++++ E   P        +A+
Sbjct: 5  PRNVSN-TFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 77 -------------LNLSYNRL 84
                       L L+   L
Sbjct: 63 SRLRDCLDRQAHELELNNLGL 83

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.5 bits (151), Expect = 6e-12
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG-RI 64
           DLS NR    +P  L   + L+VL  S N+L  N+     N+  L+ L L  N+L+    
Sbjct: 469 DLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAA 525

Query: 65  PKQLLSVTTLALLNLSYNRL 84
            + L+S   L LLNL  N L
Sbjct: 526 IQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.9 bits (134), Expect = 1e-09
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L+       +   L     +  L+LSHN L   +P +   +  LE L  S N LE  + 
Sbjct: 447 HLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD 502

Query: 66  KQLLSVTTLALLNLSYNRL 84
             + ++  L  L L  NRL
Sbjct: 503 G-VANLPRLQELLLCNNRL 520

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.4 bits (152), Expect = 7e-12
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 6   DLSSNRF--CGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
            LS N      +  ++L   K+L  L++S N+    +P S      +  L+LS   +   
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-V 424

Query: 64  IPKQLLSVTTLALLNLSYNRL 84
           +   +    TL +L++S N L
Sbjct: 425 VKTCIP--QTLEVLDVSNNNL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.0 bits (151), Expect = 8e-12
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DLS N+        L    +L+VL L  + +      +F ++ +LE LDLS N L   + 
Sbjct: 32  DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLS 90

Query: 66  KQLLS-VTTLALLNLSYNRL 84
                 +++L  LNL  N  
Sbjct: 91  SSWFGPLSSLKYLNLMGNPY 110

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.7 bits (145), Expect = 5e-11
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNI---PVSFDNMTALESLDLSFNKLE 61
            + +++    +P     + KSL+ L+LS N +               +L++L LS N L 
Sbjct: 316 TVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

Query: 62  --GRIPKQLLSVTTLALLNLSYNRL 84
              +  + LL++  L  L++S N  
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTF 399

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 14/114 (12%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           +LSS      +       ++L+VL++S+N+L  +  +    +  L+ L +S NKL+  +P
Sbjct: 416 NLSSTGI-RVVKT--CIPQTLEVLDVSNNNLD-SFSL---FLPRLQELYISRNKLK-TLP 467

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSN 119
              L    L ++ +S N+L   +P G     F+  + +  I L   P   +C  
Sbjct: 468 DASLF-PVLLVMKISRNQL-KSVPDG----IFDRLTSLQKIWLHTNPWDCSCPR 515

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 6  DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
          D  S  F   IP  L    ++K L+LS N +T            L+ L L  +++     
Sbjct: 11 DGRSRSF-TSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 66 KQLLSVTTLALLNLSYNRL 84
              S+ +L  L+LS N L
Sbjct: 68 DAFYSLGSLEHLDLSDNHL 86

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL-EGRI 64
            L S+R          +  SL+ L+LS N L+      F  +++L+ L+L  N      +
Sbjct: 56  ILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV 115

Query: 65  PKQLLSVTTLALLNLSYNRLWGRIPRG 91
                ++T L  L +     +  I R 
Sbjct: 116 TSLFPNLTNLQTLRIGNVETFSEIRRI 142

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 6/104 (5%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
            + +     EI +       SL  L +   SL      S  ++  +  L L  ++    +
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188

Query: 65  PKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHL 108
                 ++++  L L    L        QF+    D     +  
Sbjct: 189 EIFADILSSVRYLELRDTNL-----ARFQFSPLPVDEVSSPMKK 227

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 4e-09
 Identities = 9/64 (14%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 22  NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLS-VTTLALLNLS 80
              +++ L++    L  ++   +  +  ++ + +  +K+   +P      + +L  L+LS
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS 342

Query: 81  YNRL 84
            N +
Sbjct: 343 ENLM 346

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 9/79 (11%), Positives = 26/79 (32%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           ++ +        + L + + +  L L  +     + +  D ++++  L+L    L     
Sbjct: 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213

Query: 66  KQLLSVTTLALLNLSYNRL 84
             L      + +     R 
Sbjct: 214 SPLPVDEVSSPMKKLAFRG 232

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 13/114 (11%), Positives = 35/114 (30%), Gaps = 14/114 (12%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESL-----------D 54
            L  +     +        S++ L L   +L                +           D
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 55  LSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHL 108
            SFN+L  ++ + +L ++ +   + + N L       ++ +       +  + +
Sbjct: 238 ESFNELL-KLLRYILELSEVEFDDCTLNGL--GDFNPSESDVVSELGKVETVTI 288

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 25 SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRL 84
          +  V +    S T +IP       A++SLDLSFNK+       L +   L +L L  +R+
Sbjct: 6  ASGVCDGRSRSFT-SIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 85 WGRIPRG 91
             I   
Sbjct: 63 -NTIEGD 68

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.8 bits (150), Expect = 1e-11
 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           ++  +     +P  L     +  L +  N+LT ++P        L +L++S N+L   +P
Sbjct: 46  NVGESGL-TTLPDCLP--AHITTLVIPDNNLT-SLPALPPE---LRTLEVSGNQLT-SLP 97

Query: 66  KQLLSVTTLALLNLSYNRL 84
                +  L++ +     L
Sbjct: 98  VLPPGLLELSIFSNPLTHL 116

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.8 bits (142), Expect = 1e-10
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 12/79 (15%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            +  N     +P +      L+ L +S N LT ++PV    +  L         L   +P
Sbjct: 67  VIPDNNL-TSLPALPPE---LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-ALP 120

Query: 66  KQLLSVTTLALLNLSYNRL 84
             L        L +  N+L
Sbjct: 121 SGLCK------LWIFGNQL 133

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 12/79 (15%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           ++S N+    +P +      L + +     L           + L  L +  N+L   +P
Sbjct: 87  EVSGNQL-TSLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLT-SLP 137

Query: 66  KQLLSVTTLALLNLSYNRL 84
                +     L++S N+L
Sbjct: 138 VLPPGLQE---LSVSDNQL 153

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.7 bits (129), Expect = 6e-09
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 12/79 (15%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            +  N+    +P +      L+ L++S N L  ++P        L  L    N+L   +P
Sbjct: 127 WIFGNQLT-SLPVLPPG---LQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLP 177

Query: 66  KQLLSVTTLALLNLSYNRL 84
                +     L++S N+L
Sbjct: 178 MLPSGLQE---LSVSDNQL 193

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.4 bits (128), Expect = 8e-09
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            +S NR    +P +      L  L++  N LT  +P S  ++++  +++L  N L  R  
Sbjct: 247 MVSGNRL-TSLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQ 93
           + L  +T+    +    R         +
Sbjct: 302 QALREITSAPGYSGPIIRFDMAGASAPR 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            +S N+    +P +      L  L   +N LT ++P+       L+ L +S N+L   +P
Sbjct: 147 SVSDNQL-ASLPALPSE---LCKLWAYNNQLT-SLPMLPSG---LQELSVSDNQLA-SLP 197

Query: 66  KQLLSVTTLALLNLSYNRL 84
                +  L   N     L
Sbjct: 198 TLPSELYKLWAYNNRLTSL 216

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.0 bits (122), Expect = 5e-08
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 12/79 (15%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
              +NR    +P +      LK L +S N LT ++PV     + L+ L +S N+L   +P
Sbjct: 207 WAYNNRLT-SLPALPSG---LKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLP 257

Query: 66  KQLLSVTTLALLNLSYNRL 84
                 + L  L++  N+L
Sbjct: 258 MLP---SGLLSLSVYRNQL 273

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.0 bits (122), Expect = 5e-08
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 12/79 (15%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
              +N+    +P +      L+ L++S N L  ++P        L  L    N+L   +P
Sbjct: 167 WAYNNQL-TSLPMLPSG---LQELSVSDNQLA-SLPTLPSE---LYKLWAYNNRLT-SLP 217

Query: 66  KQLLSVTTLALLNLSYNRL 84
                 + L  L +S NRL
Sbjct: 218 ALP---SGLKELIVSGNRL 233

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 5/80 (6%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            +  N+    +P+ L +  S   +NL  N L+     +   +  + S       +  R  
Sbjct: 267 SVYRNQLT-RLPESLIHLSSETTVNLEGNPLS---ERTLQALREITSAPGYSGPII-RFD 321

Query: 66  KQLLSVTTLALLNLSYNRLW 85
               S              W
Sbjct: 322 MAGASAPRETRALHLAAADW 341

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 7/90 (7%)

Query: 6   DLSSNR--FCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
            LSSN   F G   +      SLK L+LS N +   +  +F  +  LE LD   + L+ +
Sbjct: 58  SLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-Q 115

Query: 64  IPKQ--LLSVTTLALLNLSYNRLWGRIPRG 91
           + +    LS+  L  L++S+         G
Sbjct: 116 MSEFSVFLSLRNLIYLDISHTHT-RVAFNG 144

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
           DLS  +   ++      +  SL+VLN+SHN+        +  + +L+ LD S N +    
Sbjct: 181 DLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TS 238

Query: 65  PKQLLS--VTTLALLNLSYNRL 84
            KQ L    ++LA LNL+ N  
Sbjct: 239 KKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 16/90 (17%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 6   DLSSNRFCGEIPK--VLGNFKSLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLEG 62
           D   +    ++ +  V  + ++L  L++SH           F+ +++LE L ++ N  + 
Sbjct: 107 DFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQE 164

Query: 63  RIPKQLLS-VTTLALLNLSYNRLWGRIPRG 91
                + + +  L  L+LS  +L  ++   
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLE-QLSPT 193

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 6  DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR-- 63
            +S      +P  +    S   L L  N L       FD +T L  L LS N L  +  
Sbjct: 13 RCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69

Query: 64 IPKQLLSVTTLALLNLSYNRLWGRIPRG 91
            +     T+L  L+LS+N +   +   
Sbjct: 70 CSQSDFGTTSLKYLDLSFNGV-ITMSSN 96

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 11/116 (9%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLEGR 63
            L+ N    +I          L  LNLS N L  +I    F+N+  LE LDLS+N +   
Sbjct: 305 TLAQNEI-NKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-A 361

Query: 64  IPKQLLS-VTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118
           +  Q    +  L  L L  N+L   +P G     F+  + +  I L   P   +C 
Sbjct: 362 LGDQSFLGLPNLKELALDTNQLK-SVPDG----IFDRLTSLQKIWLHTNPWDCSCP 412

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 9/119 (7%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKL-EG 62
            +        I         SL +L L +N     +    F+ +  LE L L+   L   
Sbjct: 60  KVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGA 118

Query: 63  RIPKQLLS-VTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSND 120
            +       +T+L +L L  N +    P       F N      + L    +   C  D
Sbjct: 119 VLSGNFFKPLTSLEMLVLRDNNIKKIQPAS----FFLNMRRFHVLDLTFNKVKSICEED 173

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLEGRI 64
           DLS N             + L+ L +   +    I   +F  +++L  L L +N+   ++
Sbjct: 36  DLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QL 94

Query: 65  PKQLL-SVTTLALLNLSYNRLWGRIPRGNQF 94
                  +  L +L L+   L G +  GN F
Sbjct: 95  ETGAFNGLANLEVLTLTQCNLDGAVLSGNFF 125

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.9 bits (122), Expect = 6e-08
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 25  SLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLEGRIPKQLL-SVTTLALLNLSYN 82
            +K  +LS + +   +    F + T LE L L+ N++  +I       +T L  LNLS N
Sbjct: 276 GVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQN 333

Query: 83  RLWGRIPRG 91
            L G I   
Sbjct: 334 FL-GSIDSR 341

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 25 SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTT-LALLNLSYNR 83
           +  ++LS NS+      SF  +  L+ L +        I        + L +L L YN+
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 84 L 84
           
Sbjct: 91 F 91

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 19/129 (14%)

Query: 6   DLSSNRF---CGEIPKVLGNFKSLKVLNLSHNSLT--------GNIPVSFDNMTALESLD 54
           DL+ N+    C E        K   +L LS  +L              +    T++ +LD
Sbjct: 160 DLTFNKVKSICEEDLLNFQG-KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLD 218

Query: 55  LSFNKLEGRIPK---QLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGE 111
           LS N  +  + K     ++ T +  L LS +   G       F   +N ++ G   L   
Sbjct: 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG---LEAS 275

Query: 112 PLT-VTCSN 119
            +     S 
Sbjct: 276 GVKTCDLSK 284

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           +L+      EIP  L     L  L+LS N L+   P SF  +  L+ L +  ++++  I 
Sbjct: 191 NLAMCNL-REIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIE 247

Query: 66  KQLLS-VTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118
           +     + +L  +NL++N L   +P       F    ++  IHL   P    C 
Sbjct: 248 RNAFDNLQSLVEINLAHNNL-TLLPHD----LFTPLHHLERIHLHHNPWNCNCD 296

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLEGRI 64
           +L  N+          + + L++L LS N +   I + +F+ +  L +L+L  N+L   I
Sbjct: 70  NLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TI 127

Query: 65  PKQLLS-VTTLALLNLSYNRLWGRIPRG 91
           P      ++ L  L L  N +   IP  
Sbjct: 128 PNGAFVYLSKLKELWLRNNPI-ESIPSY 154

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.0 bits (130), Expect = 4e-09
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSH-NSLTGNIPV-SFDNMTALESLDLSFNKLEG 62
            L +N     IP        SL+ L+L     L+  I   +F+ ++ L  L+L+   L  
Sbjct: 142 WLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLR- 198

Query: 63  RIPKQLLSVTTLALLNLSYNRLWGRIPRG 91
            IP  L  +  L  L+LS N L   I  G
Sbjct: 199 EIP-NLTPLIKLDELDLSGNHLS-AIRPG 225

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 2   FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
           F            E+P  +    + ++LNL  N +      SF ++  LE L LS N + 
Sbjct: 45  FSKVICVRKNL-REVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101

Query: 62  GRIPKQLLS-VTTLALLNLSYNRLWGRIPRGNQFNTFEN 99
             I     + +  L  L L  NRL   IP G     F  
Sbjct: 102 -TIEIGAFNGLANLNTLELFDNRL-TTIPNG----AFVY 134

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 25/135 (18%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLEGRI 64
            L  N      P     +K L+ ++LS+N ++  +   +F  + +L SL L  NK+   +
Sbjct: 38  RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-EL 95

Query: 65  PKQLL-SVTTLALLNLSYNRLWGRIPRG---------------NQF-----NTFENDSYI 103
           PK L   + +L LL L+ N++   +                  N+       TF     I
Sbjct: 96  PKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154

Query: 104 GNIHLCGEPLTVTCS 118
             +HL   P    C 
Sbjct: 155 QTMHLAQNPFICDCH 169

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 25 SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLL-SVTTLALLNLSYNR 83
          ++  + L  N++    P +F     L  +DLS N++   +       + +L  L L  N+
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK 91

Query: 84 LWGRIPRG 91
          +   +P+ 
Sbjct: 92 I-TELPKS 98

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 9/114 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           +L       ++P  L     L+ L +S N      P SF  +++L+ L +  +++   I 
Sbjct: 202 NLGMCNI-KDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIE 258

Query: 66  KQLLS-VTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118
           +     + +L  LNL++N L   +P       F    Y+  +HL   P    C 
Sbjct: 259 RNAFDGLASLVELNLAHNNL-SSLPHD----LFTPLRYLVELHLHHNPWNCDCD 307

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSH-NSLTGNIPV-SFDNMTALESLDLSFNKLEG 62
            L +N     IP        SL  L+L     L   I   +F+ +  L+ L+L    ++ 
Sbjct: 153 WLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK- 209

Query: 63  RIPKQLLSVTTLALLNLSYNRLWGRIPRG 91
            +P  L  +  L  L +S N     I  G
Sbjct: 210 DMP-NLTPLVGLEELEMSGNHFP-EIRPG 236

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 53.2 bits (128), Expect = 9e-09
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 10/99 (10%)

Query: 2   FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
           F     +      E+P+ +    + + LNL  N++      +F ++  LE L L  N + 
Sbjct: 56  FSKVVCTRRGL-SEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 62  GRIPKQLLS-VTTLALLNLSYNRLWGRIPRGNQFNTFEN 99
            +I     + + +L  L L  N L   IP G     FE 
Sbjct: 113 -QIEVGAFNGLASLNTLELFDNWL-TVIPSG----AFEY 145

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 6   DLSSNRFCGEI-PKVLGNFKSLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLEGR 63
            L  N    +I         SL  L L  N LT  IP  +F+ ++ L  L L  N +E  
Sbjct: 105 QLGRNSI-RQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-S 161

Query: 64  IPKQLLS-VTTLALLNLS-YNRLWGRIPRG 91
           IP    + V +L  L+L    +L   I  G
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKL-EYISEG 190

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 60.3 bits (146), Expect = 4e-11
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKLEGRI 64
            LS N         +     L+VL LSHN +  ++    F     LE LD+S N+L+  I
Sbjct: 58  SLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN-I 115

Query: 65  PKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFEN 99
               +   +L  L+LS+N  +  +P   +F     
Sbjct: 116 SCCPM--ASLRHLDLSFND-FDVLPVCKEFGNLTK 147

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.1 bits (130), Expect = 5e-09
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 24  KSLKVLNLSHNSLTGNIPVSFDNMTA-LESLDLSFNKLEGRIPKQLLSVTTLALLNLSYN 82
           +S+ VLNLS N LTG++   F  +   ++ LDL  N++   IPK +  +  L  LN++ N
Sbjct: 428 ESILVLNLSSNMLTGSV---FRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASN 483

Query: 83  RLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118
           +L   +P G     F+  + +  I L   P   TC 
Sbjct: 484 QL-KSVPDG----VFDRLTSLQYIWLHDNPWDCTCP 514

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.0 bits (122), Expect = 4e-08
 Identities = 12/79 (15%), Positives = 27/79 (34%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            + +  F      +   F  + +  LS +       V   + ++   L+ + N     + 
Sbjct: 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370

Query: 66  KQLLSVTTLALLNLSYNRL 84
           +   ++  L  L L  N L
Sbjct: 371 QGCSTLKRLQTLILQRNGL 389

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.3 bits (120), Expect = 9e-08
 Identities = 30/148 (20%), Positives = 46/148 (31%), Gaps = 18/148 (12%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS--FDNMTALESLDLSFNKLEGR 63
           D+S NR    I        SL+ L+LS N     +PV   F N+T L  L LS  K    
Sbjct: 106 DVSHNRL-QNIS--CCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKF--- 158

Query: 64  IPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDAVP 123
              + L +  +A L+LS   L             +              L +    +++ 
Sbjct: 159 ---RQLDLLPVAHLHLSCILL------DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF 209

Query: 124 KAPPSASTDHEEDETTSWFDWKMAKMGY 151
               + S +       S           
Sbjct: 210 SVQVNMSVNALGHLQLSNIKLNDENCQR 237

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 27/131 (20%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           +LSSN   G + + L     +KVL+L +N +  +IP    ++ AL+ L+++ N+L+  +P
Sbjct: 434 NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVP 489

Query: 66  K----QLLSVTTLALLN---------LSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEP 112
                +L S+  + L +         + Y   W            ++   + N      P
Sbjct: 490 DGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN----------KHSGVVRNSAGSVAP 539

Query: 113 LTVTCSNDAVP 123
            +  CS    P
Sbjct: 540 DSAKCSGSGKP 550

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFD---NMTALESLDLSFNKLEG 62
           + + N F   + +     K L+ L L  N L  N         NM++LE+LD+S N L  
Sbjct: 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNS 417

Query: 63  RIPKQLLS-VTTLALLNLSYNRL 84
               +  +   ++ +LNLS N L
Sbjct: 418 HAYDRTCAWAESILVLNLSSNML 440

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 25  SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQL-LSVTTLALLNLSYNR 83
             K L+LS NS++         ++ L  L LS N++   +   + L    L  L++S+NR
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111

Query: 84  LWGRIPRGN 92
           L   I    
Sbjct: 112 LQN-ISCCP 119

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 19  VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE--GRIPKQLLSVTTLAL 76
              +  S   LN + N  T ++      +  L++L L  N L+   ++     ++++L  
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407

Query: 77  LNLSYNRL 84
           L++S N L
Sbjct: 408 LDVSLNSL 415

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 9e-06
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 8/90 (8%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTA----LESLDLSFNKLE 61
            L  N       KV    K++  L     SL      ++D   A    +  L+LS N L 
Sbjct: 383 ILQRNGL-KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

Query: 62  GRIPKQLLSVTTLALLNLSYNRLWGRIPRG 91
           G + + L     + +L+L  NR+   IP+ 
Sbjct: 442 GSVFRCL--PPKVKVLDLHNNRI-MSIPKD 468

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 10/84 (11%), Positives = 26/84 (30%), Gaps = 5/84 (5%)

Query: 6   DLSSNRFCGEIPKVLGNF-----KSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
           ++ +      I +    +     KSL + ++ +     +    +     +    LS +  
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 61  EGRIPKQLLSVTTLALLNLSYNRL 84
                    S ++   LN + N  
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVF 365

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 59.6 bits (144), Expect = 7e-11
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 11/79 (13%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L+       +P  L     + VL ++ N+L  ++P    +   LE LD   N+L   +P
Sbjct: 65  QLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPAS---LEYLDACDNRLS-TLP 116

Query: 66  KQLLSVTTLALLNLSYNRL 84
           +   S+     L++  N+L
Sbjct: 117 ELPASLKH---LDVDNNQL 132

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.1 bits (135), Expect = 1e-09
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 12/79 (15%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           D   NR    +P++  +   LK L++ +N LT  +P   +    LE ++   N+L   +P
Sbjct: 106 DACDNRL-STLPELPAS---LKHLDVDNNQLT-MLP---ELPALLEYINADNNQLT-MLP 156

Query: 66  KQLLSVTTLALLNLSYNRL 84
           +     T+L +L++  N+L
Sbjct: 157 ELP---TSLEVLSVRNNQL 172

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.4 bits (133), Expect = 2e-09
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 12/79 (15%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           D+ +N+    +P++      L+ +N  +N LT  +P   +  T+LE L +  N+L   +P
Sbjct: 126 DVDNNQLT-MLPELPAL---LEYINADNNQLT-MLP---ELPTSLEVLSVRNNQLT-FLP 176

Query: 66  KQLLSVTTLALLNLSYNRL 84
           +      +L  L++S N L
Sbjct: 177 ELP---ESLEALDVSTNLL 192

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.4 bits (133), Expect = 2e-09
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALES----LDLSFNKLE 61
            + +N+    +P++  +   L+ L++S N L  ++P         E          N++ 
Sbjct: 166 SVRNNQL-TFLPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 62  GRIPKQLLSVTTLALLNLSYNRL 84
             IP+ +LS+     + L  N L
Sbjct: 221 -HIPENILSLDPTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.4 bits (120), Expect = 8e-08
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 9/79 (11%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
             + N     + + L        L L+  +L+ ++P +      +  L+++ N L   +P
Sbjct: 43  GENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLP 96

Query: 66  KQLLSVTTLALLNLSYNRL 84
           +   S+     L+   NRL
Sbjct: 97  ELPASLEY---LDACDNRL 112

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.7 bits (142), Expect = 9e-11
 Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 23/122 (18%)

Query: 6   DLSSNRFCGEIPK--VLGNFKSLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLEG 62
           DLS N     +          +L  L LSHN L   I   +F  +  L  LDLS N L  
Sbjct: 45  DLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH- 101

Query: 63  RIPKQLLS-VTTLALLNLSYNRLWGRIPRG---------------NQFNTFENDSYIGNI 106
            + + L S +  L +L L  N +   + R                NQ + F  +      
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160

Query: 107 HL 108
            L
Sbjct: 161 KL 162

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 12/103 (11%)

Query: 15  EIPKVLGNFKSLKVLNLSHNSLTGNIP--VSFDNMTALESLDLSFNKLEGRIPKQLLS-V 71
            +P+ L       +L+LSHN+L+  +    +   +T L SL LS N L   I  +    V
Sbjct: 32  NVPQSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPV 87

Query: 72  TTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLT 114
             L  L+LS N L   +        F +   +  + L    + 
Sbjct: 88  PNLRYLDLSSNHL-HTLDEF----LFSDLQALEVLLLYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 7/80 (8%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIP----VSFDNMTALESLDLSFNKL 60
            L +N     + +    +   L+ L LS N ++   P       + +  L  LDLS NKL
Sbjct: 118 LLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKL 175

Query: 61  EGRIPKQLLSVTTLALLNLS 80
           +      L  +       L 
Sbjct: 176 KKLPLTDLQKLPAWVKNGLY 195

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLEGR 63
           DLS N     +          L  L+L    L   +    F  + AL+ L L  N L+  
Sbjct: 86  DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-A 143

Query: 64  IPKQLLS-VTTLALLNLSYNRLWGRIPRG 91
           +P      +  L  L L  NR+   +P  
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRIS-SVPER 171

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.5 bits (137), Expect = 5e-10
 Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 2/87 (2%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L  NR            ++L +L L  N L      +F  +  LE LDLS N     + 
Sbjct: 38  FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 97

Query: 66  KQLLS-VTTLALLNLSYNRLWGRIPRG 91
                 +  L  L+L    L   +  G
Sbjct: 98  PATFHGLGRLHTLHLDRCGL-QELGPG 123

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 9/115 (7%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
            L  N     +P     +  +L  L L  N ++     +F  + +L+ L L  N++   +
Sbjct: 135 YLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HV 192

Query: 65  PKQLLS-VTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118
                  +  L  L L  N L   +P             +  + L   P    C 
Sbjct: 193 HPHAFRDLGRLMTLYLFANNL-SALPTE----ALAPLRALQYLRLNDNPWVCDCR 242

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 9/95 (9%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
                     +P  +    + + + L  N ++     SF     L  L L  N L  RI 
Sbjct: 17  SCPQQGL-QAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RID 72

Query: 66  KQLLS-VTTLALLNLSYNRLWGRIPRGNQFNTFEN 99
               + +  L  L+LS N     +       TF  
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPA----TFHG 103

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.2 bits (136), Expect = 9e-10
 Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 8/126 (6%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           D  +     E+   L     L  L L++  LT  + VS  + T L+SL      ++    
Sbjct: 303 DCQAAGI-TELD--LSQNPKLVYLYLNNTELT-ELDVS--HNTKLKSLSCVNAHIQD-FS 355

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDAVPKA 125
             +  +  L     +  +           N+         +   G P+ +   +  V   
Sbjct: 356 -SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQ 414

Query: 126 PPSAST 131
             +  T
Sbjct: 415 ATNTIT 420

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           D  ++    ++   +     L  L  + N++T  + +S    T L  L    NKL   + 
Sbjct: 48  DCHNSSI-TDMTG-IEKLTGLTKLICTSNNIT-TLDLS--QNTNLTYLACDSNKLT-NLD 101

Query: 66  KQLLSVTTLALLNLSYNRL 84
             +  +T L  LN   N+L
Sbjct: 102 --VTPLTKLTYLNCDTNKL 118

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           +  +N    ++   L     L  L+ S N LT  I V+   +T L   D S N L   + 
Sbjct: 197 NCDTNNI-TKLD--LNQNIQLTFLDCSSNKLT-EIDVT--PLTQLTYFDCSVNPLT-ELD 249

Query: 66  KQLLSVTTLALLNLSYNRL 84
              L  + L  L+     L
Sbjct: 250 VSTL--SKLTTLHCIQTDL 266

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 8/79 (10%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           D   N+   ++   +     L  L+ S N +T  + VS      L  L+   N +  ++ 
Sbjct: 154 DCHLNKKITKLD--VTPQTQLTTLDCSFNKIT-ELDVS--QNKLLNRLNCDTNNIT-KLD 207

Query: 66  KQLLSVTTLALLNLSYNRL 84
             L     L  L+ S N+L
Sbjct: 208 --LNQNIQLTFLDCSSNKL 224

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
              SN+    +   +     L  LN   N LT  + VS      L  L+ + N L   I 
Sbjct: 91  ACDSNKL-TNLD--VTPLTKLTYLNCDTNKLT-KLDVS--QNPLLTYLNCARNTLT-EID 143

Query: 66  KQLLSVTTLALLNLSYNRL 84
             +   T L  L+   N+ 
Sbjct: 144 --VSHNTQLTELDCHLNKK 160

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 20 LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79
               +L  L+  ++S+T ++    + +T L  L  + N +   +   L   T L  L  
Sbjct: 38 EEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLAC 92

Query: 80 SYNRL 84
            N+L
Sbjct: 93 DSNKL 97

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           + + N    EI   + +   L  L+   N     + V+    T L +LD SFNK+   + 
Sbjct: 133 NCARNTLT-EID--VSHNTQLTELDCHLNKKITKLDVT--PQTQLTTLDCSFNKITE-LD 186

Query: 66  KQLLSVTTLALLNLSYNRL 84
                   L  LN   N +
Sbjct: 187 VSQN--KLLNRLNCDTNNI 203

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 17/99 (17%), Positives = 26/99 (26%), Gaps = 27/99 (27%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS--------------------FD 45
           D S N    E+   +     L  L+     L   I ++                      
Sbjct: 239 DCSVNPL-TELD--VSTLSKLTTLHCIQTDLL-EIDLTHNTQLIYFQAEGCRKIKELDVT 294

Query: 46  NMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRL 84
           + T L  LD     +   +   L     L  L L+   L
Sbjct: 295 HNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTEL 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 6/75 (8%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           D SSN+   EI   +     L   + S N LT  + VS   ++ L +L      L     
Sbjct: 218 DCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLLEIDL 271

Query: 66  KQLLSVTTLALLNLS 80
                +         
Sbjct: 272 THNTQLIYFQAEGCR 286

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 22 NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81
          NF S         +      +S + +  L SLD   + +   +   +  +T L  L  + 
Sbjct: 19 NFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTS 73

Query: 82 NRL 84
          N +
Sbjct: 74 NNI 76

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 14  GEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTT 73
           G++  +   F+ L+ L+  +  LT +I      +  L+ L+LS N++ G +         
Sbjct: 32  GKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89

Query: 74  LALLNLSYNRL 84
           L  LNLS N++
Sbjct: 90  LTHLNLSGNKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 6   DLSSNRFCGEIPKV--LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG- 62
              +      +  +  L     LK L LS N ++G + V  +    L  L+LS NK++  
Sbjct: 48  STINV----GLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103

Query: 63  RIPKQLLSVTTLALLNLSYN 82
              + L  +  L  L+L   
Sbjct: 104 STIEPLKKLENLKSLDLFNC 123

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           +L       ++  V G    L  L+LSHN L  ++P+    + AL  LD+SFN+L   +P
Sbjct: 61  NLDRAEL-TKLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP 116

Query: 66  KQLL-SVTTLALLNLSYNRL 84
              L  +  L  L L  N L
Sbjct: 117 LGALRGLGELQELYLKGNEL 136

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.1 bits (120), Expect = 8e-08
 Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKLEGRI 64
           D+S NR        L     L+ L L  N L   +P         LE L L+ N L   +
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-EL 163

Query: 65  PKQLL-SVTTLALLNLSYNRLWGRIPRG 91
           P  LL  +  L  L L  N L   IP+G
Sbjct: 164 PAGLLNGLENLDTLLLQENSL-YTIPKG 190

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 13/83 (15%)

Query: 6  DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
          +         +P      K   +L+LS N L      +    T L  L+L   +L     
Sbjct: 16 NCDKRNL-TALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL----- 67

Query: 66 KQLLSV----TTLALLNLSYNRL 84
             L V      L  L+LS+N+L
Sbjct: 68 -TKLQVDGTLPVLGTLDLSHNQL 89

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 31/150 (20%)

Query: 17  PKVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKLEGRIPK---QLLSVT 72
           P +L     L+ L+L++N+LT  +P    + +  L++L L  N L   IPK       + 
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP 198

Query: 73  TLALLN--------LSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSND---- 120
              L          + Y R W    + N  N +     +    +     +V C N     
Sbjct: 199 FAFLHGNPWLCNCEILYFRRW---LQDNAENVYVWKQGVDVKAMTSNVASVQCDNSDKFP 255

Query: 121 ----------AVPKAPPSASTDHEEDETTS 140
                      +     +   D+  +E T 
Sbjct: 256 VYKYPGKGCPTLGDEGDTDLYDYYPEEDTE 285

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 7/103 (6%)

Query: 17  PKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLS-VTTLA 75
            K       L+ L +  + L    P S  ++  +  L L   +    + +  +   +++ 
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVE 225

Query: 76  LLNLSYNRL----WGRIPRGNQFNTFENDSYIGNIHLCGEPLT 114
            L L    L    +  +  G + N+        N+ +  E L 
Sbjct: 226 CLELRDTDLDTFHFSELSTG-ETNSLIKKFTFRNVKITDESLF 267

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
             SS      IP   G  +++K L+LS+N +T            L++L L+ N +   I 
Sbjct: 37  KGSSGSL-NSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIE 92

Query: 66  KQLLS-VTTLALLNLSYNRLWGRIPRG 91
           +   S + +L  L+LSYN L   +   
Sbjct: 93  EDSFSSLGSLEHLDLSYNYL-SNLSSS 118

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 6   DLSSNRFCGEIP-KVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKLEGR 63
            L+SN     I      +  SL+ L+LS+N L+ N+  S F  +++L  L+L  N  +  
Sbjct: 82  VLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTL 139

Query: 64  IPKQLLS-VTTLALLNLSYNRLWGRIPRG 91
               L S +T L +L +     + +I R 
Sbjct: 140 GETSLFSHLTKLQILRVGNMDTFTKIQRK 168

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 14/79 (17%), Positives = 33/79 (41%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           ++ ++      PK L + +++  L L        + +  D  +++E L+L    L+    
Sbjct: 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239

Query: 66  KQLLSVTTLALLNLSYNRL 84
            +L +  T +L+     R 
Sbjct: 240 SELSTGETNSLIKKFTFRN 258

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 14/121 (11%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGN----IPV----SFDNMTALESLDLSF 57
            L   +    +   +    S++ L L    L       +      S        ++ ++ 
Sbjct: 204 ILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263

Query: 58  NKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTC 117
             L  ++ K L  ++ L  L  S N+L   +P G     F+  + +  I L   P   +C
Sbjct: 264 ESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDG----IFDRLTSLQKIWLHTNPWDCSC 317

Query: 118 S 118
            
Sbjct: 318 P 318

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 9/112 (8%)

Query: 6   DLSSNRFCGEIP-KVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKLEGR 63
           DLS N     +         SL  LNL  N        S F ++T L+ L +       +
Sbjct: 106 DLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164

Query: 64  IPKQLL-SVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLT 114
           I ++    +T L  L +  + L           + ++   + ++ L  +   
Sbjct: 165 IQRKDFAGLTFLEELEIDASDLQ-SYEPK----SLKSIQNVSHLILHMKQHI 211

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 2   FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
           F  ++LS+          L    + + + ++  SL   +    + ++ L  L+ S N+L+
Sbjct: 237 FHFSELSTGETNS-----LIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK 290

Query: 62  GRIPKQLL-SVTTLALLNLSYN 82
             +P  +   +T+L  + L  N
Sbjct: 291 S-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 2   FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKL 60
           FR   ++      ++ K+L     L  L  S N L  ++P   FD +T+L+ + L  N  
Sbjct: 256 FRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 4e-09
 Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 9/113 (7%)

Query: 9   SNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIP-VSFDNMTALESLDLSFNKLEGRIPKQ 67
           +     +    L   ++L  L + +     ++       +  L +L +  + L   +   
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 68  LLS-VTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSN 119
                  L+ LNLS+N L   +       T +  S +  + L G PL  +C+ 
Sbjct: 75  AFHFTPRLSRLNLSFNALE-SLSWK----TVQGLS-LQELVLSGNPLHCSCAL 121

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 6e-08
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLEGR 63
            + + +    +    L     L+ L +  + L   +   +F     L  L+LSFN LE  
Sbjct: 37  YIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-S 94

Query: 64  IPKQLLSVTTLALLNLSYNRL 84
           +  + +   +L  L LS N L
Sbjct: 95  LSWKTVQGLSLQELVLSGNPL 115

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.7 bits (127), Expect = 8e-09
 Identities = 36/140 (25%), Positives = 55/140 (39%), Gaps = 29/140 (20%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS--FDNMTALESLDLSFNKLEGR 63
                         +G+ K+LK LN++HN +  +  +   F N+T LE LDLS NK++  
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-S 163

Query: 64  IP----KQLLSVTTLAL-LNLSYNRLWGRIPRG--------------NQF-----NTFEN 99
           I     + L  +  L L L+LS N +   I  G              NQ        F+ 
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 222

Query: 100 DSYIGNIHLCGEPLTVTCSN 119
            + +  I L   P   +C  
Sbjct: 223 LTSLQKIWLHTNPWDCSCPR 242

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKL---E 61
           DLS N           +F  L+VL+LS   +   I    + +++ L +L L+ N +    
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 62  GRIPKQLLSVTTLALLNLSYNRL 84
                 L   ++L  L      L
Sbjct: 93  LGAFSGL---SSLQKLVAVETNL 112

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLEGRI 64
           DLS             +   L  L L+ N +  ++ + +F  +++L+ L      L   +
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SL 115

Query: 65  PKQLLS-VTTLALLNLSYNRL 84
               +  + TL  LN+++N +
Sbjct: 116 ENFPIGHLKTLKELNVAHNLI 136

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 25 SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLS-VTTLALLNLSYNR 83
          S K L+LS N L      SF +   L+ LDLS  +++  I       ++ L+ L L+ N 
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 84 L 84
          +
Sbjct: 88 I 88

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 14  GEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTT 73
           G+I  +   F +L+ L+L +  L  ++  +   +  L+ L+LS N++ G +      +  
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96

Query: 74  LALLNLSYNRL 84
           L  LNLS N+L
Sbjct: 97  LTHLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 6   DLSSNRFCGEIPKV--LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG- 62
            L +      +  V  L     LK L LS N + G + +  + +  L  L+LS NKL+  
Sbjct: 55  SLINV----GLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

Query: 63  RIPKQLLSVTTLALLNLSYN 82
              + L  +  L  L+L   
Sbjct: 111 STLEPLKKLECLKSLDLFNC 130

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 24/135 (17%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLEGR 63
            L++N F       +      L+ +N S+N +T +I   +F+  + +  + L+ N+LE  
Sbjct: 38  RLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENV 96

Query: 64  IPKQLLSVTTLALLNLSYNRLWGRIPRG---------------NQF-----NTFENDSYI 103
             K    + +L  L L  NR+   +                  NQ        F+    +
Sbjct: 97  QHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155

Query: 104 GNIHLCGEPLTVTCS 118
             ++L   P    C 
Sbjct: 156 STLNLLANPFNCNCY 170

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
            L+ N         + G    L  L L  N LTG  P +F+  + ++ L L  NK++  I
Sbjct: 35  LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EI 93

Query: 65  PKQLL-SVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118
             ++   +  L  LNL  N++   +  G    +FE+ + + +++L   P    C 
Sbjct: 94  SNKMFLGLHQLKTLNLYDNQI-SCVMPG----SFEHLNSLTSLNLASNPFNCNCH 143

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 6/79 (7%)

Query: 6  DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
              +     +     +   +  L+     +T  I      +  L  L+L  N++   + 
Sbjct: 25 AAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT-DLA 79

Query: 66 KQLLSVTTLALLNLSYNRL 84
            L ++T +  L LS N L
Sbjct: 80 -PLKNLTKITELELSGNPL 97

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.5 bits (121), Expect = 6e-08
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           +LS N    +    +   +S+K L+L+   +T   P     ++ L+ L L  N++    P
Sbjct: 91  ELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP 146

Query: 66  KQLLSVTTLALLNLSYNRL 84
             L  +T L  L++   ++
Sbjct: 147 --LAGLTNLQYLSIGNAQV 163

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.1 bits (120), Expect = 7e-08
 Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L  N+    I   L    +L+ L++ +  ++ ++     N++ L +L    NK+   I 
Sbjct: 135 YLDLNQI-TNIS-PLAGLTNLQYLSIGNAQVS-DLT-PLANLSKLTTLKADDNKISD-IS 189

Query: 66  KQLLSVTTLALLNLSYNRL 84
             L S+  L  ++L  N++
Sbjct: 190 P-LASLPNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 20  LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79
           +    +L  L L  N +T ++     N+T +  L+LS N L  +    +  + ++  L+L
Sbjct: 59  VQYLNNLIGLELKDNQIT-DLA-PLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDL 114

Query: 80  SYNRL 84
           +  ++
Sbjct: 115 TSTQI 119

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 8/65 (12%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 20 LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79
               +   +    +++T    V+  ++  + +L      +   I   +  +  L  L L
Sbjct: 15 DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLEL 70

Query: 80 SYNRL 84
            N++
Sbjct: 71 KDNQI 75

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 11/77 (14%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
               N+   +I   L +  +L  ++L +N ++ ++     N + L  + L+   +     
Sbjct: 179 KADDNKIS-DISP-LASLPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTLTNQTITN--- 231

Query: 66  KQLLSVTTLALLNLSYN 82
           + +     L + N+   
Sbjct: 232 QPVFYNNNLVVPNVVKG 248

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.3 bits (122), Expect = 4e-08
 Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 6  DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
          +L        +        S+  +  +++ +  ++      +  +  L L+ NKL   I 
Sbjct: 27 NLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT-DI- 80

Query: 66 KQLLSVTTLALLNLSYNRL 84
          K L ++  L  L L  N++
Sbjct: 81 KPLTNLKNLGWLFLDENKI 99

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 10/81 (12%)

Query: 6   DLSSNRFCGEIPKV--LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
            L  N     I  +  L +   L+ L L +N +T +I      +T L++L L  N++   
Sbjct: 115 SLEHNG----ISDINGLVHLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQIS-D 167

Query: 64  IPKQLLSVTTLALLNLSYNRL 84
           I   L  +T L  L LS N +
Sbjct: 168 IV-PLAGLTKLQNLYLSKNHI 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.9 bits (116), Expect = 3e-07
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 10/81 (12%)

Query: 6   DLSSNRFCGEIPKV--LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
            L +N+    I  +  L     L  L+L  N ++ +I      +T L++L LS N +   
Sbjct: 137 YLGNNK----ITDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-- 188

Query: 64  IPKQLLSVTTLALLNLSYNRL 84
             + L  +  L +L L     
Sbjct: 189 DLRALAGLKNLDVLELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.6 bits (115), Expect = 4e-07
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 10/81 (12%)

Query: 6   DLSSNRFCGEIPKV--LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
            L+ N+    +  +  L N K+L  L L  N +  ++  S  ++  L+SL L  N +   
Sbjct: 71  FLNGNK----LTDIKPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGIS-D 123

Query: 64  IPKQLLSVTTLALLNLSYNRL 84
           I   L+ +  L  L L  N++
Sbjct: 124 ING-LVHLPQLESLYLGNNKI 143

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 9/65 (13%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 20 LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79
             F      NL   S+T  +    + + +++ +  + + ++  + + +  +  +  L L
Sbjct: 17 DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFL 72

Query: 80 SYNRL 84
          + N+L
Sbjct: 73 NGNKL 77

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.0 bits (98), Expect = 5e-05
 Identities = 14/114 (12%), Positives = 38/114 (33%), Gaps = 9/114 (7%)

Query: 6   DLSSNRFCGEIPKV--LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
            L  N+    I  +  L     L+ L LS N ++ ++  +   +  L+ L+L   +   +
Sbjct: 159 SLEDNQ----ISDIVPLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNK 212

Query: 64  IPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTC 117
                 ++     +  +   L       +    +E  +   ++      ++   
Sbjct: 213 PINHQSNLVVPNTVKNTDGSL-VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIF 265

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 7/79 (8%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           +  ++    +    +  F +LK L+LSHN ++ ++     ++T LE L ++ N+L+  + 
Sbjct: 47  NGDNSNI--QSLAGMQFFTNLKELHLSHNQIS-DLS-PLKDLTKLEELSVNRNRLK-NLN 101

Query: 66  KQLLSVTTLALLNLSYNRL 84
              +    L+ L L  N L
Sbjct: 102 G--IPSACLSRLFLDNNEL 118

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 12/65 (18%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 20 LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79
               +    NL   S+T ++ VS   ++ +++ +   + ++  +   +   T L  L+L
Sbjct: 15 DPGLANAVKQNLGKQSVT-DL-VSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHL 70

Query: 80 SYNRL 84
          S+N++
Sbjct: 71 SHNQI 75

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 10/81 (12%)

Query: 6   DLSSNRFCGEIPKV--LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
            L +N     +     L + K+L++L++ +N L  +I      ++ LE LDL  N++   
Sbjct: 112 FLDNNE----LRDTDSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNT 165

Query: 64  IPKQLLSVTTLALLNLSYNRL 84
               L  +  +  ++L+  + 
Sbjct: 166 GG--LTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 9/80 (11%)

Query: 6   DLSSNRFCGEIPKVLG-NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI 64
            ++ NR    +  + G     L  L L +N L  +   S  ++  LE L +  NKL+  I
Sbjct: 91  SVNRNR----LKNLNGIPSACLSRLFLDNNELR-DTD-SLIHLKNLEILSIRNNKLK-SI 143

Query: 65  PKQLLSVTTLALLNLSYNRL 84
              L  ++ L +L+L  N +
Sbjct: 144 V-MLGFLSKLEVLDLHGNEI 162

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 10/81 (12%)

Query: 6   DLSSNRFCGEIPKV--LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
            L  N+    +  +  L + K LK L+L HN ++ +I     ++  LESL L  NK+   
Sbjct: 96  FLDENK----VKDLSSLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITDI 149

Query: 64  IPKQLLSVTTLALLNLSYNRL 84
               L  +T L  L+L  N++
Sbjct: 150 TV--LSRLTKLDTLSLEDNQI 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           +L        +        S+  +  +++ +  ++      +  +  L L+ NKL   I 
Sbjct: 30  NLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT-DI- 83

Query: 66  KQLLSVTTLALLNLSYNRL 84
           K L ++  L  L L  N++
Sbjct: 84  KPLANLKNLGWLFLDENKV 102

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 10/81 (12%)

Query: 6   DLSSNRFCGEIPKV--LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
            L +N+    I  +  L     L  L+L  N ++ +I      +T L++L LS N +   
Sbjct: 140 YLGNNK----ITDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHISD- 192

Query: 64  IPKQLLSVTTLALLNLSYNRL 84
             + L  +  L +L L     
Sbjct: 193 -LRALAGLKNLDVLELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 10/81 (12%)

Query: 6   DLSSNRFCGEIPKV--LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
            L+ N+    +  +  L N K+L  L L  N +  ++  S  ++  L+SL L  N +   
Sbjct: 74  FLNGNK----LTDIKPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-D 126

Query: 64  IPKQLLSVTTLALLNLSYNRL 84
           I   L+ +  L  L L  N++
Sbjct: 127 ING-LVHLPQLESLYLGNNKI 146

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 9/65 (13%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 20 LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79
             F      NL   S+T  +    + + +++ +  + + ++  + + +  +  +  L L
Sbjct: 20 DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFL 75

Query: 80 SYNRL 84
          + N+L
Sbjct: 76 NGNKL 80

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.7 bits (119), Expect = 9e-08
 Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFN---KLE 61
           DL S                L  LNL +N L   +    FD++T L +L L+ N    L 
Sbjct: 41  DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 62  GRIPKQLLSVTTLALLNLSYNRLWGRIPRG 91
             +   L   T L  L L  N+L   +P G
Sbjct: 100 LGVFDHL---TQLDKLYLGGNQL-KSLPSG 125

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKLEGRI 64
           +L  N+       V  +   L  L L++N L  ++P+  FD++T L+ L L  N+L+  +
Sbjct: 65  NLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SL 122

Query: 65  PKQLL-SVTTLALLNLSYNRLWGRIPRG 91
           P  +   +T L  L L+ N+L   IP G
Sbjct: 123 PSGVFDRLTKLKELRLNTNQL-QSIPAG 149

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 5/93 (5%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLEGR 63
            L        IP     N  ++  + +S +     +   SF N++ +  +++   +    
Sbjct: 37  KLIETHL-RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95

Query: 64  IPKQLLS-VTTLALLNLSYNRLWGRIPRGNQFN 95
           I    L  +  L  L +    L    P   +  
Sbjct: 96  IDPDALKELPLLKFLGIFNTGL-KMFPDLTKVY 127

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 7/91 (7%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIP--VSFDNMTALESLDLSFNKLEG 62
           ++ + R    I    L     LK L + +  L    P      +      L+++ N    
Sbjct: 86  EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 63  RIPKQLLS--VTTLALLNLSYNRLWGRIPRG 91
            IP             L L  N     +   
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFT-SVQGY 174

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 6   DLSSNRFCGEIP-KVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKLEGR 63
            +S +    ++      N   +  + + +      I       +  L+ L +    L+  
Sbjct: 61  YVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-M 119

Query: 64  IP--KQLLSVTTLALLNLSYNRLWGRIPRG 91
            P   ++ S     +L ++ N     IP  
Sbjct: 120 FPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 6   DLSSNRFCGEIPKV--LGNFKSLKVLNLSHNSLTGNIPV-SFDNMTA-LESLDLSFNKLE 61
            + +       P +  + +     +L ++ N    +IPV +F  +     +L L  N   
Sbjct: 111 GIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169

Query: 62  GRIPKQLLSVTTLALLNLSYNRLWGRIPRG 91
             +     + T L  + L+ N+    I + 
Sbjct: 170 -SVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 7/77 (9%)

Query: 25  SLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLEGRIPKQLLS-VTTLALLNLSYN 82
           S + L L    L   IP  +F N+  +  + +S +    ++       ++ +  + +   
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 83  RLWGRIPRGNQFNTFEN 99
           R    I         + 
Sbjct: 91  RNLTYIDPD----ALKE 103

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 6   DLSSNRFCGEIPKVLGNFKSL----KVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
           +++ N +   IP     F+ L      L L +N  T ++     N T L+++ L+ NK  
Sbjct: 136 EITDNPYMTSIPV--NAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYL 192

Query: 62  GRIPKQLLS--VTTLALLNLSYNRL 84
             I K       +  +LL++S   +
Sbjct: 193 TVIDKDAFGGVYSGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 6   DLSSNRFCGEIPKVLGNFK--SLKVLNLSHNSLTGNIPV-SFDNM-TALESLDLSFNKLE 61
            L +N F   +      F    L  + L+ N     I   +F  + +    LD+S   + 
Sbjct: 162 KLYNNGF-TSVQG--YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

Query: 62  GRIPKQLL-SVTTLALLNL 79
             +P + L  +  L   N 
Sbjct: 219 -ALPSKGLEHLKELIARNT 236

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 15  EIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTL 74
           ++   L   K+ K L LS N++   I  S   M  L  L L  N ++ +I        TL
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 75  ALLNLSYNRL 84
             L +SYN++
Sbjct: 96  EELWISYNQI 105

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG-RI 64
            L  N    +I  +     +L+ L +S+N +  ++    + +  L  L +S NK+     
Sbjct: 76  SLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGE 132

Query: 65  PKQLLSVTTLALLNLSYN 82
             +L ++  L  L L+ N
Sbjct: 133 IDKLAALDKLEDLLLAGN 150

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 7/90 (7%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLS-FNKLEG 62
                +    I K     F  L+ + +S N +   I    F N+  L  + +   N L  
Sbjct: 36  RFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL- 93

Query: 63  RIPKQLLS-VTTLALLNLSYNRLWGRIPRG 91
            I  +    +  L  L +S   +   +P  
Sbjct: 94  YINPEAFQNLPNLQYLLISNTGI-KHLPDV 122

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 6   DLSSNRFCGEIPK-VLGNFKSLKVLNLSH-NSLTGNIPVS-FDNMTALESLDLSFNKLEG 62
           ++S N     I   V  N   L  + +   N+L   I    F N+  L+ L +S   ++ 
Sbjct: 60  EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIK- 117

Query: 63  RIPKQL-LSVTTLALLNLSYNRLWGRIPRG 91
            +P    +      LL++  N     I R 
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 11/84 (13%)

Query: 6  DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLEGRI 64
              ++   EIP  L   ++   L      L   I   +F     LE +++S N +   I
Sbjct: 15 LCQESKV-TEIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 65 P----KQLLSVTTLALLNLSYNRL 84
                 L  +  + +     N L
Sbjct: 71 EADVFSNLPKLHEIRIEK--ANNL 92

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.4 bits (105), Expect = 8e-06
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 17  PKVLGNFKSLKVLNLSHNSLTGNIP-VSFDNMTALESLDLSFNKLEGRIPKQLLS--VTT 73
           P+   N  +L+ L +S+  +  ++P V   +      LD+  N     I +         
Sbjct: 97  PEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE 155

Query: 74  LALLNLSYNRLWGRIPRG 91
             +L L+ N +   I   
Sbjct: 156 SVILWLNKNGIQ-EIHNS 172

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 17  PKVLGNFKSLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLEGRIPKQLLSVTTLA 75
             V        +L++S   +  ++P    +N+  L +      K   ++P  L  +  L 
Sbjct: 195 NDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALM 249

Query: 76  LLNLSYNR----LWGRIPRGNQFNTFENDSYI 103
             +L+Y            + ++ +   N S +
Sbjct: 250 EASLTYPSHCCAFANWRRQISELHPICNKSIL 281

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DL   +    I  +         ++ S N +   +   F  +  L++L ++ N++     
Sbjct: 25  DLRGYKI-PVIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGE 81

Query: 66  KQLLSVTTLALLNLSYNRL 84
               ++  L  L L+ N L
Sbjct: 82  GLDQALPDLTELILTNNSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 2   FRATDLSSNRFCGEIPKV--LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNK 59
           F A D S N    EI K+      + LK L +++N +          +  L  L L+ N 
Sbjct: 44  FDAIDFSDN----EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 99

Query: 60  LEG-RIPKQLLSVTTLALLNLSYN 82
           L        L S+ +L  L +  N
Sbjct: 100 LVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 13/70 (18%)

Query: 20 LGNFKSLKVLNLSHNSLT--GNIPVSFDNMTALESLDLSFN---KLEGRIPKQLLSVTTL 74
            N    + L+L    +    N+  + D     +++D S N   KL+G        +  L
Sbjct: 15 YTNAVRDRELDLRGYKIPVIENLGATLDQ---FDAIDFSDNEIRKLDG-----FPLLRRL 66

Query: 75 ALLNLSYNRL 84
            L ++ NR+
Sbjct: 67 KTLLVNNNRI 76

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 27/136 (19%)

Query: 6   DLSSNRFCGEIP-KVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKLEGR 63
            ++ N+    +P  V     +L  L L  N L  ++P   FD++T L  L L +N+L+  
Sbjct: 91  WVTDNKL-QALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-S 147

Query: 64  IPKQLL-SVTTLALLNLSYNRLWGRIPRG---------------NQF-----NTFENDSY 102
           +PK +   +T+L  L L  N+L  R+P G               NQ        F++   
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206

Query: 103 IGNIHLCGEPLTVTCS 118
           +  + L   P   TC+
Sbjct: 207 LKMLQLQENPWDCTCN 222

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKLEGRI 64
            L+ N+       +    K+L+ L ++ N L   +P+  FD +  L  L L  N+L+  +
Sbjct: 67  YLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SL 124

Query: 65  PKQLL-SVTTLALLNLSYNRLWGRIPRG 91
           P ++  S+T L  L+L YN L   +P+G
Sbjct: 125 PPRVFDSLTKLTYLSLGYNELQ-SLPKG 151

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 25 SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL---EGRIPKQLLSVTTLALLNLSY 81
            K L+L  N L+     +F  +T L  L L+ NKL      I K+L     L  L ++ 
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL---KNLETLWVTD 94

Query: 82 NRL 84
          N+L
Sbjct: 95 NKL 97

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 9/115 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKLEGRI 64
           +L SN+       V      L  L+LS N +  ++P   FD +T L  L L  NKL+  +
Sbjct: 34  ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ-SL 91

Query: 65  PKQLL-SVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118
           P  +   +T L  L L  N+L   +P G     F+  + +  I L   P   +C 
Sbjct: 92  PNGVFDKLTQLKELALDTNQL-KSVPDG----IFDRLTSLQKIWLHTNPWDCSCP 141

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 27 KVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWG 86
            L L  N L       FD +T L  L LS N+++         +T L +L L  N+L  
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL-Q 89

Query: 87 RIPRG 91
           +P G
Sbjct: 90 SLPNG 94

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 13/92 (14%)

Query: 6   DLSSNRFCGE----IPKVLGNFKSLKVLNLSHNSLT-----GNIPVSFDNMTALESLDLS 56
               NR          K   + + L  + +  N +        +         L+ LDL 
Sbjct: 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQ 224

Query: 57  FNKL--EG--RIPKQLLSVTTLALLNLSYNRL 84
            N     G   +   L S   L  L L+   L
Sbjct: 225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 17/95 (17%)

Query: 6   DLSSNRF----CGEIPKVLGNFKSLKVLNLSHNSLT--GNIPVS-----FDNMTALESLD 54
           DL  N F       +   L ++ +L+ L L+   L+  G   V       +N+  L++L 
Sbjct: 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLR 280

Query: 55  LSFNKLEGRIPKQLLSV-----TTLALLNLSYNRL 84
           L +N++E    + L +V       L  L L+ NR 
Sbjct: 281 LQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 24/103 (23%)

Query: 6   DLSSNRFCGEIP-------KVLGNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLD 54
           D+ + R   EIP       + L     L  + LS N+        +       T LE L 
Sbjct: 69  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 128

Query: 55  LSFNKL-------------EGRIPKQLLSVTTLALLNLSYNRL 84
           L  N L             E  + K+  +   L  +    NRL
Sbjct: 129 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 20/98 (20%)

Query: 6   DLSSNRF----CGEIPKVLGNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSF 57
            L  +         +  VL    S+K + LS N++       +  +  +   LE  + S 
Sbjct: 10  SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 69

Query: 58  NKLEGRIPKQ-----------LLSVTTLALLNLSYNRL 84
               GR+  +           LL    L  + LS N  
Sbjct: 70  IFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 9/76 (11%)

Query: 18  KVLGNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKL--EG--RIPKQLL 69
           K   N   L+ +    N L          +F +   L ++ +  N +  EG   +  + L
Sbjct: 153 KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212

Query: 70  SV-TTLALLNLSYNRL 84
           +    L +L+L  N  
Sbjct: 213 AYCQELKVLDLQDNTF 228

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 13/77 (16%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

Query: 20 LGNFKSLKVLNLSHNSLTG----NIPVSFDNMTALESLDLSFNKL--EG--RIPKQLLSV 71
          +  F S++  +L  +++T     ++        +++ + LS N +  E    + + + S 
Sbjct: 1  MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 72 TTLALLNLSYNRLWGRI 88
            L +   S     GR+
Sbjct: 60 KDLEIAEFSDIFT-GRV 75

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.0 bits (113), Expect = 5e-07
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 21  GNFKSLKVLNLSHNSLTGNIP---VSFDNMTALESLDLSFNKLEGR----IPKQLLSVTT 73
             F +LK L +        +    +  D +  LE++D+S   L       +   +  +  
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 74  LALLNLSYNRL 84
           L  +N+ YN L
Sbjct: 309 LKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 10/70 (14%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 6   DLSSNRFCGEIPKVLGNF---KSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFN 58
            +        + ++         L+ +++S   LT      +    D +  L+ +++ +N
Sbjct: 258 GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317

Query: 59  KLEGRIPKQL 68
            L   + K+L
Sbjct: 318 YLSDEMKKEL 327

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 15/93 (16%)

Query: 6   DLSSNRF----CGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSF------DNMTALESLDL 55
            L +       CG +   L    +L+ L+LS N L G+  +        D    LE L L
Sbjct: 91  SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQL 149

Query: 56  SFNKLEGRIPKQLLSV----TTLALLNLSYNRL 84
            +  L     + L SV         L +S N +
Sbjct: 150 EYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 13/92 (14%)

Query: 6   DLSSNRF----CGEIPKVLGNFKSLKVLNLSHNSLT--GNIPVSF---DNMTALESLDLS 56
            + S  F    C     VL   + L  L +S+N L   G   +        + L  L L+
Sbjct: 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378

Query: 57  FNKL--EG--RIPKQLLSVTTLALLNLSYNRL 84
              +       +   LL+  +L  L+LS N L
Sbjct: 379 DCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 13/92 (14%)

Query: 6   DLSSNRF----CGEIPKVLGNFKSLKVLNLSHNSLTGN-----IPVSFDNMTALESLDLS 56
            +         CG++ +VL   +SLK L+L+ N L             +    LESL + 
Sbjct: 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321

Query: 57  FNKLEGRIPKQLLSV----TTLALLNLSYNRL 84
                        SV      L  L +S NRL
Sbjct: 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 13/92 (14%)

Query: 6   DLSSNRF----CGEIPKVLGNFKSLKVLNLSHNSLTGN-----IPVSFDNMTALESLDLS 56
            L S       C ++  ++ +  SL+ L L  N L         P      + L +L + 
Sbjct: 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264

Query: 57  FNKL--EG--RIPKQLLSVTTLALLNLSYNRL 84
              +  +G   + + L +  +L  L+L+ N L
Sbjct: 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 10/89 (11%)

Query: 6  DLSSNRFCGE-IPKVLGNFKSLKVLNLSHNSLT----GNIPVSFDNMTALESLDLSFNKL 60
          D+           ++L   +  +V+ L    LT     +I  +     AL  L+L  N+L
Sbjct: 9  DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 68

Query: 61 EGRIPKQLLSV-----TTLALLNLSYNRL 84
                 +L         +  L+L    L
Sbjct: 69 GDVGVHCVLQGLQTPSCKIQKLSLQNCCL 97

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 15/93 (16%)

Query: 6   DLSSNRF----CGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSF------DNMTALESLDL 55
            L         C +I   L    +L  LNL  N L G++ V             ++ L L
Sbjct: 34  RLDDCGLTEARCKDISSALRVNPALAELNLRSNEL-GDVGVHCVLQGLQTPSCKIQKLSL 92

Query: 56  SFNKLEGR----IPKQLLSVTTLALLNLSYNRL 84
               L G     +   L ++ TL  L+LS N L
Sbjct: 93  QNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 14/93 (15%)

Query: 6   DLSSNRFCGE----IPKVLGNFK-SLKVLNLSHNSLT----GNIPVSFDNMTALESLDLS 56
            +S+N         + + L +    L+ L L    +T     ++     +  +L  L L 
Sbjct: 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235

Query: 57  FNKL--EG--RIPKQLLSV-TTLALLNLSYNRL 84
            NKL   G   +   LL   + L  L +    +
Sbjct: 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 5/66 (7%)

Query: 24 KSLKVLNLSHNSLTGN-IPVSFDNMTALESLDLSFNKLEGRIPKQLLSV----TTLALLN 78
            ++ L++    L+          +   + + L    L     K + S       LA LN
Sbjct: 3  LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 79 LSYNRL 84
          L  N L
Sbjct: 63 LRSNEL 68

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 3/87 (3%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKLEGRI 64
            L  N+     P V  +  +LK L L  N L   +PV  FD++T L  LDL  N+L    
Sbjct: 46  YLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLP 104

Query: 65  PKQLLSVTTLALLNLSYNRLWGRIPRG 91
                 +  L  L +  N+L   +PRG
Sbjct: 105 SAVFDRLVHLKELFMCCNKL-TELPRG 130

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 27  KVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL---EGRIPKQLLSVTTLALLNLSYNR 83
           ++L L  N +T   P  FD++  L+ L L  N+L      +   L   T L +L+L  N+
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL---TQLTVLDLGTNQ 99

Query: 84  L 84
           L
Sbjct: 100 L 100

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 1/86 (1%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DL +N        V     SL  L L  N L       F+ +T+L  L+LS N+L+    
Sbjct: 34  DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN 93

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRG 91
                +T L  L L+ N+L   +P G
Sbjct: 94  GVFDKLTQLKELALNTNQL-QSLPDG 118

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 7/95 (7%)

Query: 25  SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLL-SVTTLALLNLSYNR 83
           SL  LNLS N L       FD +T L+ L L+ N+L+  +P  +   +T L  L L  N+
Sbjct: 77  SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQ 135

Query: 84  LWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118
           L   +P G     F+  + +  I L   P   TC 
Sbjct: 136 L-KSVPDG----VFDRLTSLQYIWLHDNPWDCTCP 165

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 25  SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLL-SVTTLALLNLSYNR 83
           + +VL L  N +T   P  FD +T L  LDL  N+L   +P  +   +T L  L+L+ N+
Sbjct: 31  TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQ 89

Query: 84  LWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118
           L   IPRG     F+N   + +I L   P    CS
Sbjct: 90  L-KSIPRG----AFDNLKSLTHIWLLNNPWDCACS 119

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 7/78 (8%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKLEGRI 64
            L  N+     P V      L  L+L +N LT  +P   FD +T L  L L+ N+L+  I
Sbjct: 36  YLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK-SI 93

Query: 65  PK----QLLSVTTLALLN 78
           P+     L S+T + LLN
Sbjct: 94  PRGAFDNLKSLTHIWLLN 111

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 25  SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRL 84
           +++ L L  N L  +I      +T L  L L+ N+L+         +T L  L L  N+L
Sbjct: 64  NVRYLALGGNKLH-DISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L  N+       V     +L  LNL+HN L       FD +T L  LDLS+N+L+  +P
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLP 173

Query: 66  KQLL-SVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118
           + +   +T L  L L  N+L   +P G     F+  + +  I L   P   TC 
Sbjct: 174 EGVFDKLTQLKDLRLYQNQL-KSVPDG----VFDRLTSLQYIWLHDNPWDCTCP 222

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 16/86 (18%)

Query: 6   DLSSNRFCGEIPKVLGNFKSL---KVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKL- 60
            L  N+        +   K L     L L+ N L  ++P   FD +T L+ L L  N+L 
Sbjct: 69  ALGGNKL-----HDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ 122

Query: 61  --EGRIPKQLLSVTTLALLNLSYNRL 84
                +  +L   T L  LNL++N+L
Sbjct: 123 SLPDGVFDKL---TNLTYLNLAHNQL 145

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 16/94 (17%)

Query: 6   DLSSNRF----CGEIPKVLGNF-KSLKVLNLSHNSLTGNIPVSF------DNMTALESLD 54
           +L  N      C E+ K L +   S+  L+LS N L G    +            + SL+
Sbjct: 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL-GLKSYAELAYIFSSIPNHVVSLN 231

Query: 55  LSFNKLEGRIPKQLLSV----TTLALLNLSYNRL 84
           L  N L G   + L  +      L  + L Y+ +
Sbjct: 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV 265

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 13 CGEIPKVLGNFKSLKVLNLSHNSLT--GNIPVSF---DNMTALESLDLSFNKLEGRIPKQ 67
             + +       +  L+LS N+L     + +     +   ++ SL+LS N L  +   +
Sbjct: 11 SNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE 70

Query: 68 LLSV-----TTLALLNLSYNRL 84
          L+ +       +  LNLS N L
Sbjct: 71 LVQILAAIPANVTSLNLSGNFL 92

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 15/94 (15%)

Query: 6   DLSSNRF----CGEIPKVL-GNFKSLKVLNLSHNSLT--GNIPVSF---DNMTALESLDL 55
           +LS N        E+ ++L     ++  LNLS N L+   +  +          +  LDL
Sbjct: 57  NLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL 116

Query: 56  SFNKLEGRIPKQLLSV-----TTLALLNLSYNRL 84
            +N    +   +          ++  LNL  N L
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL 150

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 15/94 (15%)

Query: 6   DLSSNRF----CGEIPKVL-GNFKSLKVLNLSHNSLTGN-----IPVSFDNMTALESLDL 55
           +LS N        E+ K L     ++ VL+L  N  +            +   ++ SL+L
Sbjct: 86  NLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNL 145

Query: 56  SFNKLEGRIPKQLLSV-----TTLALLNLSYNRL 84
             N L  +   +L+ +       +  LNL  N L
Sbjct: 146 RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 17/95 (17%)

Query: 6   DLSSNRF----CGEIPKVLGNF-KSLKVLNLSHNSLTGNIPVSF------DNMTALESLD 54
           +L  N        E+ ++L     ++  LNL  N+L  +   +           ++ SLD
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL-ASKNCAELAKFLASIPASVTSLD 202

Query: 55  LSFNKL--EG--RIPKQLLSV-TTLALLNLSYNRL 84
           LS N L  +    +     S+   +  LNL  N L
Sbjct: 203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 25  SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLL-SVTTLALLNLSYNR 83
             + L L++N +T   P  FD++  L+ L  + NKL   IP  +   +T L  L+L+ N 
Sbjct: 34  DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNH 92

Query: 84  LWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118
           L   IPRG     F+N   + +I+L   P    C 
Sbjct: 93  L-KSIPRG----AFDNLKSLTHIYLYNNPWDCECR 122

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 12/91 (13%)

Query: 6   DLSSNRF----CGEIPKVLGNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSF 57
            LS+N         + + L    S+  L+L H  L       +    D    L+ L++++
Sbjct: 161 RLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220

Query: 58  NKLEGRIPKQLLSV----TTLALLNLSYNRL 84
           N         L        +L LL+L +N L
Sbjct: 221 NGAGDTAALALARAAREHPSLELLHLYFNEL 251

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 13/92 (14%)

Query: 6   DLSSNRF----CGEIPKVL-GNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLS 56
            L  N      C ++  +L  +   +  L LS+N LT      +       T++  L L 
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191

Query: 57  FNKL--EG--RIPKQLLSVTTLALLNLSYNRL 84
              L  EG   +  QL     L  LN++YN  
Sbjct: 192 HTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 16/92 (17%)

Query: 6   DLSSNRF----CGEIPKVLGNFKSLKVLNLSHNSLT--GNIPVS---FDNMTALESLDLS 56
           +L+S +        +  V       + L L  NSL       +      +   + +L LS
Sbjct: 107 NLASCQLDPAGLRTLLPVF---LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLS 163

Query: 57  FNKL--EG--RIPKQLLSVTTLALLNLSYNRL 84
            N L   G   + + L   T++  L+L +  L
Sbjct: 164 NNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL 195

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 24  KSLKVLNLSHNSLT--GNIPVSF---DNMTALESLDLSFNKL--EGRIPKQLLSV-TTLA 75
            SL+ LNL+   +T      V+        AL+ ++L+  +L   G   + LL V     
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGL--RTLLPVFLRAR 129

Query: 76  LLNLSYNRL 84
            L L  N L
Sbjct: 130 KLGLQLNSL 138

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 19/94 (20%)

Query: 6   DLSSNRFCGEIPKVLG-----NFKSLKVLNLSHNSLTGN-----IPVSFDNMTALESLDL 55
           +L+  R       V+         +L  +NL+   L        +PV          L L
Sbjct: 78  NLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV----FLRARKLGL 133

Query: 56  SFNKLEGRIPKQLLSV-----TTLALLNLSYNRL 84
             N L     K L  +       +  L LS N L
Sbjct: 134 QLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL 167

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 8/68 (11%)

Query: 24  KSLKVLNLSHNSLTGNIPVSFDNM----TALESLDLSFNKL--EG--RIPKQLLSVTTLA 75
             +K  ++        +  +   M      L+SL++  N +   G   + + L S T+L 
Sbjct: 65  TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLI 124

Query: 76  LLNLSYNR 83
            L +    
Sbjct: 125 ELRIDNQS 132

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 9/77 (11%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 15  EIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNM----TALESLDLSFNKLEGR----IPK 66
            + +   N K ++  +L++ +++ +       +     +L  L++  N L       + +
Sbjct: 61  SLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120

Query: 67  QLLSVTTLALLNLSYNR 83
             L   ++        R
Sbjct: 121 STLVTQSIVEFKADNQR 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.86
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.65
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.64
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.63
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.63
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.62
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.61
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.61
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.61
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.61
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.6
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.6
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.6
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.58
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.58
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.58
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.57
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.55
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.54
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.54
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.54
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.53
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.53
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.52
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.52
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.49
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.49
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.48
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.48
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.47
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.46
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.46
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.45
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.45
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.45
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.44
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.44
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.42
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.42
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.42
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.41
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.41
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.41
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.41
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.41
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.4
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.4
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.39
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.39
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.39
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.39
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.39
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.38
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.38
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.37
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.37
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.36
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.35
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.34
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.3
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.3
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.29
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.27
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.27
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.25
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.24
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.2
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.2
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.2
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.01
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.99
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.97
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.97
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.97
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.96
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.96
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.94
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.86
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.84
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.79
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.75
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.75
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.66
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.63
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.59
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.5
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.38
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.36
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.32
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.26
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.16
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.1
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.9
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.81
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.8
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.57
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.43
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.34
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.27
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.94
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.76
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.74
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.72
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.44
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.01
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.9
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.46
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	88.7
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	86.68
2k9y_A	41	Ephrin type-A receptor 2; receptor tyrosine kinase	84.89
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	83.85
2knc_B	79	Integrin beta-3; transmembrane signaling, protein	83.1
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	80.04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.86  E-value=6.2e-22  Score=174.35  Aligned_cols=120  Identities=41%  Similarity=0.678  Sum_probs=114.6

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.|||++|.++|.+|..++.++.|+.|+|++|.++|.+|..++.+++|+.||+++|+++|.+|..+..+++|++||++
T Consensus       633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  712 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS  712 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred             cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCCCCC
Q 035751           81 YNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDA  121 (195)
Q Consensus        81 ~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~~~~  121 (195)
                      +|+++|.+|...++..+....+.||+.+||.|+. .|....
T Consensus       713 ~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          713 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN  752 (768)
T ss_dssp             SSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred             CCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence            9999999999999999999999999999999987 786543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=2e-17  Score=125.14  Aligned_cols=113  Identities=18%  Similarity=0.301  Sum_probs=76.8

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.|+|++|.|++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus        58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  137 (220)
T 2v70_A           58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY  137 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred             CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence            36677777777776666677777777777777777776666667777777777777777776667777777777777777


Q ss_pred             cCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751           81 YNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS  118 (195)
Q Consensus        81 ~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~  118 (195)
                      +|.+++..|..     +..+..+....+.+|++.|+|.
T Consensus       138 ~N~l~~~~~~~-----~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          138 DNQITTVAPGA-----FDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TSCCCCBCTTT-----TTTCTTCCEEECCSCCEECSGG
T ss_pred             CCcCCEECHHH-----hcCCCCCCEEEecCcCCcCCCc
Confidence            77777655542     2222223334555666666665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.72  E-value=8.4e-18  Score=133.50  Aligned_cols=114  Identities=33%  Similarity=0.584  Sum_probs=104.2

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |++|++++|.+++..|..+..+++|+.|+|++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|+.|++++
T Consensus       199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  277 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence            67889999999888889999999999999999999976665 88899999999999999999999999999999999999


Q ss_pred             CcCccCCCCCCccCCCCcccccCCccccCCCCCCCC
Q 035751           82 NRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTC  117 (195)
Q Consensus        82 N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c  117 (195)
                      |.++|.+|....+..+..+.+.+|+.+||.|.. .|
T Consensus       278 N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          278 NNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             SEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            999999999888889999999999999998876 45

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.72  E-value=3.2e-17  Score=121.63  Aligned_cols=112  Identities=32%  Similarity=0.507  Sum_probs=92.7

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|.|+ .+|..|..+++|+.|+|++|.|++..+..|..+++|++|++++|.|++..|..|..+++|+.|+++
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            4789999999998 788999999999999999999998888889999999999999999998888889999999999999


Q ss_pred             cCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751           81 YNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS  118 (195)
Q Consensus        81 ~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~  118 (195)
                      +|.+++ +|..    .+..+..+....+.+||+.|+|.
T Consensus       111 ~N~l~~-~~~~----~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A          111 GNDISV-VPEG----AFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             SSCCCB-CCTT----TTTTCTTCCEEECCSSCEECSGG
T ss_pred             CCCCCe-eChh----hhhcCccccEEEeCCCCeecCCc
Confidence            999994 4432    12222333344566667777775

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=4.2e-17  Score=123.31  Aligned_cols=86  Identities=28%  Similarity=0.315  Sum_probs=49.8

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |+.|+|++|.|++..|..|..+++|++|+|++|.|+...+..|..+++|++|++++|.+++..|..+..+++|+.|++++
T Consensus        58 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  137 (220)
T 2v9t_B           58 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD  137 (220)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC
Confidence            45556666665555555556666666666666666544444455566666666666666555555555666666666666


Q ss_pred             CcCccC
Q 035751           82 NRLWGR   87 (195)
Q Consensus        82 N~l~g~   87 (195)
                      |.+++.
T Consensus       138 N~l~~~  143 (220)
T 2v9t_B          138 NKLQTI  143 (220)
T ss_dssp             SCCSCC
T ss_pred             CcCCEE
Confidence            666533

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=3.2e-17  Score=121.42  Aligned_cols=113  Identities=26%  Similarity=0.392  Sum_probs=91.6

Q ss_pred             CccEEEecCCcCCCCcch-hhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751            1 MFRATDLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l   79 (195)
                      +|++|++++|.|++..+. .|..+++|++|+|++|.+++..|..|..+++|++|++++|.|++..+..+..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            478999999999966654 4899999999999999999888999999999999999999999888888999999999999


Q ss_pred             ccCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751           80 SYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS  118 (195)
Q Consensus        80 ~~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~  118 (195)
                      ++|.+++..|..     +..+..+....+.+|++.++|.
T Consensus       110 ~~N~l~~~~~~~-----~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          110 YDNQISCVMPGS-----FEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CSSCCCEECTTS-----STTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCcCCeeCHHH-----hhcCCCCCEEEeCCCCccCcCc
Confidence            999999877753     2222223333455666666654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.71  E-value=6.3e-18  Score=150.23  Aligned_cols=88  Identities=31%  Similarity=0.418  Sum_probs=58.8

Q ss_pred             hhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcCccCCCCCCccCCC
Q 035751           18 KVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTF   97 (195)
Q Consensus        18 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~   97 (195)
                      ..|.++++|+.|+|++|.+++..|..|..+++|+.|++++|++++..|..+.  ++|+.|++++|.+++..|..  +..+
T Consensus       474 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L  549 (844)
T 3j0a_A          474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSL  549 (844)
T ss_dssp             SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSC
T ss_pred             hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCc
Confidence            4456667777777777777766666677777777777777777755444443  67777777777777766653  4455


Q ss_pred             CcccccCCcccc
Q 035751           98 ENDSYIGNIHLC  109 (195)
Q Consensus        98 ~~~~~~~n~~l~  109 (195)
                      ..+.+.+|+..|
T Consensus       550 ~~l~l~~Np~~C  561 (844)
T 3j0a_A          550 SVLDITHNKFIC  561 (844)
T ss_dssp             CEEEEEEECCCC
T ss_pred             CEEEecCCCccc
Confidence            555666666555

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.67  E-value=4.6e-16  Score=118.20  Aligned_cols=88  Identities=27%  Similarity=0.265  Sum_probs=58.3

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|.|++..|..|..+++|+.|+|++|.++...+..|..+++|++|++++|.|++..+..+..+++|+.|+++
T Consensus        41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls  120 (229)
T 3e6j_A           41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC  120 (229)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEecc
Confidence            35677777777776666667777777777777777765544556667777777777777765545555666666666666


Q ss_pred             cCcCccCCC
Q 035751           81 YNRLWGRIP   89 (195)
Q Consensus        81 ~N~l~g~~p   89 (195)
                      +|.++ .+|
T Consensus       121 ~N~l~-~lp  128 (229)
T 3e6j_A          121 CNKLT-ELP  128 (229)
T ss_dssp             SSCCC-SCC
T ss_pred             CCccc-ccC
Confidence            66666 444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=4.9e-17  Score=120.41  Aligned_cols=89  Identities=20%  Similarity=0.271  Sum_probs=84.2

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|.|++..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus        55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            58999999999999889999999999999999999998888889999999999999999999889999999999999999


Q ss_pred             cCcCccCCC
Q 035751           81 YNRLWGRIP   89 (195)
Q Consensus        81 ~N~l~g~~p   89 (195)
                      +|++++..+
T Consensus       135 ~N~l~c~c~  143 (192)
T 1w8a_A          135 SNPFNCNCH  143 (192)
T ss_dssp             TCCBCCSGG
T ss_pred             CCCccCcCc
Confidence            999997665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.65  E-value=1.4e-15  Score=110.91  Aligned_cols=89  Identities=27%  Similarity=0.219  Sum_probs=76.7

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            47889999999997777778899999999999999997777778999999999999999997666677889999999999


Q ss_pred             cCcCccCCC
Q 035751           81 YNRLWGRIP   89 (195)
Q Consensus        81 ~N~l~g~~p   89 (195)
                      +|.+++..+
T Consensus       109 ~N~l~~~~~  117 (177)
T 2o6r_A          109 TNQLKSVPD  117 (177)
T ss_dssp             SSCCSCCCT
T ss_pred             CCcceEeCH
Confidence            999984433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.64  E-value=2e-15  Score=116.01  Aligned_cols=89  Identities=25%  Similarity=0.229  Sum_probs=63.3

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus        60 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  139 (251)
T 3m19_A           60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN  139 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence            46777777777777666667777777777777777776666667777777777777777775555556667777777777


Q ss_pred             cCcCccCCC
Q 035751           81 YNRLWGRIP   89 (195)
Q Consensus        81 ~N~l~g~~p   89 (195)
                      +|.+++..+
T Consensus       140 ~N~l~~~~~  148 (251)
T 3m19_A          140 TNQLQSIPA  148 (251)
T ss_dssp             SSCCCCCCT
T ss_pred             CCcCCccCH
Confidence            777764433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.63  E-value=1.7e-15  Score=110.09  Aligned_cols=84  Identities=29%  Similarity=0.306  Sum_probs=57.1

Q ss_pred             cEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccC
Q 035751            3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYN   82 (195)
Q Consensus         3 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N   82 (195)
                      +.|++++|.++ .+|..+.  ++|+.|+|++|.|++..|..|..+++|++|++++|+|++..+..|..+++|++|++++|
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            56777777776 4555442  66777777777777666667777777777777777777555555667777777777777


Q ss_pred             cCccCCC
Q 035751           83 RLWGRIP   89 (195)
Q Consensus        83 ~l~g~~p   89 (195)
                      .+++..+
T Consensus        89 ~l~~~~~   95 (170)
T 3g39_A           89 QLKSIPR   95 (170)
T ss_dssp             CCCCCCT
T ss_pred             ccCEeCH
Confidence            7764333

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.63  E-value=1.5e-15  Score=110.42  Aligned_cols=89  Identities=24%  Similarity=0.194  Sum_probs=81.8

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|.|++..|..|..+++|++|+|++|.|++..+..|..+++|++|++++|.|++..+..+..+++|+.|+++
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            47899999999998889999999999999999999997777778999999999999999997766779999999999999


Q ss_pred             cCcCccCCC
Q 035751           81 YNRLWGRIP   89 (195)
Q Consensus        81 ~N~l~g~~p   89 (195)
                      +|++++..+
T Consensus       111 ~N~~~c~c~  119 (170)
T 3g39_A          111 NNPWDCACS  119 (170)
T ss_dssp             SSCBCTTBG
T ss_pred             CCCCCCCch
Confidence            999986654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.62  E-value=3.8e-15  Score=117.04  Aligned_cols=83  Identities=29%  Similarity=0.320  Sum_probs=49.2

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |++|++++|.++ .+|..+..+++|+.|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus        79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  157 (290)
T 1p9a_G           79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (290)
T ss_dssp             CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence            556666666665 4555555666666666666666655445566666666666666666544444455556666666666


Q ss_pred             CcCc
Q 035751           82 NRLW   85 (195)
Q Consensus        82 N~l~   85 (195)
                      |.++
T Consensus       158 N~l~  161 (290)
T 1p9a_G          158 NNLT  161 (290)
T ss_dssp             SCCS
T ss_pred             CcCC
Confidence            6665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.61  E-value=7.8e-15  Score=109.50  Aligned_cols=85  Identities=28%  Similarity=0.258  Sum_probs=49.3

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  109 (208)
T 2o6s_A           30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT  109 (208)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence            55666666666654444555666666666666666644444455566666666666666544444455556666666666


Q ss_pred             CcCcc
Q 035751           82 NRLWG   86 (195)
Q Consensus        82 N~l~g   86 (195)
                      |.+++
T Consensus       110 N~l~~  114 (208)
T 2o6s_A          110 NQLQS  114 (208)
T ss_dssp             SCCCC
T ss_pred             CcCcc
Confidence            66653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.61  E-value=5.8e-15  Score=114.77  Aligned_cols=89  Identities=28%  Similarity=0.280  Sum_probs=58.5

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus        86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  165 (272)
T 3rfs_A           86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS  165 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence            36667777777776555566667777777777777765555556667777777777777665555555666667777777


Q ss_pred             cCcCccCCC
Q 035751           81 YNRLWGRIP   89 (195)
Q Consensus        81 ~N~l~g~~p   89 (195)
                      +|.+++..+
T Consensus       166 ~n~l~~~~~  174 (272)
T 3rfs_A          166 YNQLQSLPE  174 (272)
T ss_dssp             SSCCCCCCT
T ss_pred             CCCcCccCH
Confidence            776664433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.61  E-value=6.2e-15  Score=114.42  Aligned_cols=85  Identities=26%  Similarity=0.295  Sum_probs=50.0

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |++|+|++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus        87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  166 (270)
T 2o6q_A           87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN  166 (270)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence            56666666666655445556666666666666666655555556666666666666666544344455555666666666


Q ss_pred             CcCcc
Q 035751           82 NRLWG   86 (195)
Q Consensus        82 N~l~g   86 (195)
                      |.+++
T Consensus       167 n~l~~  171 (270)
T 2o6q_A          167 NQLKR  171 (270)
T ss_dssp             SCCSC
T ss_pred             CcCcE
Confidence            65553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.61  E-value=1.3e-15  Score=130.15  Aligned_cols=114  Identities=20%  Similarity=0.368  Sum_probs=93.7

Q ss_pred             CccEEEecCCcCC-CCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751            1 MFRATDLSSNRFC-GEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l   79 (195)
                      +|+.|+|++|.+. +..|..|..+++|++|+|++|.+++..|..|..+++|++|+|++|+|++..|..+..+++|+.|++
T Consensus       470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  549 (635)
T 4g8a_A          470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY  549 (635)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred             hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence            4678999998744 457788999999999999999999888999999999999999999999888889999999999999


Q ss_pred             ccCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751           80 SYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS  118 (195)
Q Consensus        80 ~~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~  118 (195)
                      ++|++++..|...  ..+.  ..+....+.+||+.|+|.
T Consensus       550 s~N~l~~~~~~~l--~~l~--~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          550 SLNHIMTSKKQEL--QHFP--SSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             TTSCCCBCCSSCT--TCCC--TTCCEEECTTCCBCCSGG
T ss_pred             CCCcCCCCCHHHH--Hhhh--CcCCEEEeeCCCCcccCC
Confidence            9999998777642  1110  223334666777888886

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.60  E-value=4.2e-15  Score=108.44  Aligned_cols=81  Identities=25%  Similarity=0.286  Sum_probs=53.7

Q ss_pred             cEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccC
Q 035751            3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYN   82 (195)
Q Consensus         3 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N   82 (195)
                      +.+++++|.+. .+|..+.  ++|+.|+|++|.|++..|..|..+++|++|+|++|+|++..+..+..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            45677777765 5555443  66777777777777666666777777777777777776544444566777777777777


Q ss_pred             cCcc
Q 035751           83 RLWG   86 (195)
Q Consensus        83 ~l~g   86 (195)
                      .+++
T Consensus        92 ~l~~   95 (174)
T 2r9u_A           92 HLKS   95 (174)
T ss_dssp             CCCC
T ss_pred             ccce
Confidence            7763

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.60  E-value=6.8e-15  Score=107.31  Aligned_cols=89  Identities=24%  Similarity=0.197  Sum_probs=80.1

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.|+|++|.|++..|..|..+++|++|+|++|.|++..+..|..+++|++|++++|.|++..+..+..+++|+.|+++
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            47899999999998889999999999999999999997766678999999999999999996666668999999999999


Q ss_pred             cCcCccCCC
Q 035751           81 YNRLWGRIP   89 (195)
Q Consensus        81 ~N~l~g~~p   89 (195)
                      +|++.+..+
T Consensus       114 ~N~~~c~~~  122 (174)
T 2r9u_A          114 NNPWDCECR  122 (174)
T ss_dssp             SSCBCTTBG
T ss_pred             CCCcccccc
Confidence            999985443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.60  E-value=1.5e-15  Score=122.68  Aligned_cols=86  Identities=24%  Similarity=0.167  Sum_probs=63.9

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|.|++..+..|..+++|+.|+|++|.|+...+..|..+++|++|+|++|.|++..|..|..+++|+.|+|+
T Consensus        65 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  144 (361)
T 2xot_A           65 NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS  144 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             ccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECC
Confidence            46777777777776666677777777777777777776656667777777777777777776667777777777777777


Q ss_pred             cCcCcc
Q 035751           81 YNRLWG   86 (195)
Q Consensus        81 ~N~l~g   86 (195)
                      +|.+++
T Consensus       145 ~N~l~~  150 (361)
T 2xot_A          145 QNQISR  150 (361)
T ss_dssp             SSCCCS
T ss_pred             CCcCCe
Confidence            777773

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.58  E-value=1.3e-14  Score=110.20  Aligned_cols=112  Identities=28%  Similarity=0.365  Sum_probs=91.2

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|.|....+..|..+++|+.|+|++|.+++..+..|..+++|++|++++|.|+ .+|..+..+++|+.|+++
T Consensus        65 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~  143 (229)
T 3e6j_A           65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD  143 (229)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred             CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence            5889999999998766677899999999999999999777777899999999999999999 789999999999999999


Q ss_pred             cCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751           81 YNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS  118 (195)
Q Consensus        81 ~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~  118 (195)
                      +|.+++..+.     .+..+..+....+.+||+.|+|.
T Consensus       144 ~N~l~~~~~~-----~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          144 QNQLKSIPHG-----AFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             SSCCCCCCTT-----TTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CCcCCccCHH-----HHhCCCCCCEEEeeCCCccCCcc
Confidence            9999854432     22222333344566677777664

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.58  E-value=5.5e-15  Score=122.25  Aligned_cols=112  Identities=26%  Similarity=0.308  Sum_probs=59.6

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus       301 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  380 (455)
T 3v47_A          301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT  380 (455)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCC
Confidence            45555555555555555555555555555555555555555555556666666666665555555555566666666666


Q ss_pred             CcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751           82 NRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS  118 (195)
Q Consensus        82 N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~  118 (195)
                      |.+++..+..     +..+..+....+.+|++.++|.
T Consensus       381 N~l~~~~~~~-----~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          381 NQLKSVPDGI-----FDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             SCCSCCCTTT-----TTTCTTCCEEECCSSCBCCCTT
T ss_pred             CccccCCHhH-----hccCCcccEEEccCCCcccCCC
Confidence            6665322211     1222222333455566666664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.58  E-value=1.1e-14  Score=110.07  Aligned_cols=90  Identities=23%  Similarity=0.255  Sum_probs=81.3

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.|+|++|.|++..+..|..+++|+.|+|++|.+++..|..|..+++|++|++++|.|+...+..+..+++|+.|+++
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~  112 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN  112 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence            47899999999997777789999999999999999998889999999999999999999996555667889999999999


Q ss_pred             cCcCccCCCC
Q 035751           81 YNRLWGRIPR   90 (195)
Q Consensus        81 ~N~l~g~~p~   90 (195)
                      +|.+++..|.
T Consensus       113 ~N~l~~~~~~  122 (220)
T 2v9t_B          113 ANKINCLRVD  122 (220)
T ss_dssp             SSCCCCCCTT
T ss_pred             CCCCCEeCHH
Confidence            9999976654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.57  E-value=9.1e-15  Score=110.41  Aligned_cols=89  Identities=26%  Similarity=0.213  Sum_probs=83.6

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus        82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  161 (220)
T 2v70_A           82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL  161 (220)
T ss_dssp             TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence            58999999999998888889999999999999999998889999999999999999999998889999999999999999


Q ss_pred             cCcCccCCC
Q 035751           81 YNRLWGRIP   89 (195)
Q Consensus        81 ~N~l~g~~p   89 (195)
                      +|++++..+
T Consensus       162 ~N~l~c~c~  170 (220)
T 2v70_A          162 ANPFNCNCY  170 (220)
T ss_dssp             SCCEECSGG
T ss_pred             CcCCcCCCc
Confidence            999986554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.56  E-value=2.9e-14  Score=109.44  Aligned_cols=105  Identities=23%  Similarity=0.172  Sum_probs=82.6

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +++.|+|++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            46789999999998888888899999999999999988877788889999999999999987666778888999999999


Q ss_pred             cCcCccCCCCC-CccCCCCcccccCC
Q 035751           81 YNRLWGRIPRG-NQFNTFENDSYIGN  105 (195)
Q Consensus        81 ~N~l~g~~p~~-~~~~~~~~~~~~~n  105 (195)
                      +|.+++..+.. ..+..+..+.+.+|
T Consensus       116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N  141 (251)
T 3m19_A          116 GNQLKSLPSGVFDRLTKLKELRLNTN  141 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCcCCCcChhHhccCCcccEEECcCC
Confidence            99988544432 23444444444444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=2e-14  Score=106.44  Aligned_cols=87  Identities=26%  Similarity=0.290  Sum_probs=80.2

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.|+|++|.|++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|.|+...+..+..+++|+.|+++
T Consensus        55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence            58999999999998888899999999999999999998888889999999999999999996666678899999999999


Q ss_pred             cCcCccC
Q 035751           81 YNRLWGR   87 (195)
Q Consensus        81 ~N~l~g~   87 (195)
                      +|++.+.
T Consensus       135 ~N~~~C~  141 (193)
T 2wfh_A          135 ANPLYCD  141 (193)
T ss_dssp             SSCEECS
T ss_pred             CCCeecC
Confidence            9999753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.55  E-value=1.6e-14  Score=123.36  Aligned_cols=105  Identities=18%  Similarity=0.116  Sum_probs=83.5

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      ++++|||++|.|++..+.+|.++++|++|||++|.|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            47889999999997777889999999999999999997777789999999999999999987666778899999999999


Q ss_pred             cCcCccCCCCC-CccCCCCcccccCC
Q 035751           81 YNRLWGRIPRG-NQFNTFENDSYIGN  105 (195)
Q Consensus        81 ~N~l~g~~p~~-~~~~~~~~~~~~~n  105 (195)
                      +|.+++..+.. ..+..+..+.+.+|
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N  158 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNVAHN  158 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred             CCcCCCCChhhhhcCcccCeeccccC
Confidence            99998544431 23344444444333

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.54  E-value=2.3e-14  Score=114.80  Aligned_cols=84  Identities=18%  Similarity=0.145  Sum_probs=66.9

Q ss_pred             EEEecCC-cCCCCcchhhcCCCCCcEEEccC-CCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            4 ATDLSSN-RFCGEIPKVLGNFKSLKVLNLSH-NSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         4 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      .++++++ .++ .+|. +..+++|+.|+|++ |.|++..+..|..|++|+.|+|++|.|++..|..|..+++|+.|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4677777 787 5677 88888888888885 888877777788888888888888888877777888888888888888


Q ss_pred             CcCccCCC
Q 035751           82 NRLWGRIP   89 (195)
Q Consensus        82 N~l~g~~p   89 (195)
                      |.|++..+
T Consensus        90 N~l~~~~~   97 (347)
T 2ifg_A           90 NALESLSW   97 (347)
T ss_dssp             SCCSCCCS
T ss_pred             CccceeCH
Confidence            88885443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.54  E-value=7.7e-14  Score=104.06  Aligned_cols=106  Identities=25%  Similarity=0.201  Sum_probs=86.5

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  132 (208)
T 2o6s_A           53 SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY  132 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECC
Confidence            58999999999997777778999999999999999997777778999999999999999997767778899999999999


Q ss_pred             cCcCccCCCCC-CccCCCCcccccCCc
Q 035751           81 YNRLWGRIPRG-NQFNTFENDSYIGNI  106 (195)
Q Consensus        81 ~N~l~g~~p~~-~~~~~~~~~~~~~n~  106 (195)
                      +|.+++..+.. ..+..+..+.+.+|+
T Consensus       133 ~N~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          133 QNQLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CCccceeCHHHhccCCCccEEEecCCC
Confidence            99999554432 233444444444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.54  E-value=9.8e-15  Score=113.95  Aligned_cols=90  Identities=20%  Similarity=0.208  Sum_probs=71.8

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.+++..|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus       106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  185 (285)
T 1ozn_A          106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH  185 (285)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence            47788888888887777788888888888888888886666668888888888888888886555567778888888888


Q ss_pred             cCcCccCCCC
Q 035751           81 YNRLWGRIPR   90 (195)
Q Consensus        81 ~N~l~g~~p~   90 (195)
                      +|.+++..|.
T Consensus       186 ~n~l~~~~~~  195 (285)
T 1ozn_A          186 QNRVAHVHPH  195 (285)
T ss_dssp             SSCCCEECTT
T ss_pred             CCcccccCHh
Confidence            8888766554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.53  E-value=1.6e-14  Score=113.69  Aligned_cols=87  Identities=28%  Similarity=0.366  Sum_probs=60.9

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCC-CCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTG-NIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l   79 (195)
                      +|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|+.|++
T Consensus       127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  206 (306)
T 2z66_A          127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  206 (306)
T ss_dssp             TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence            36677777777776666667777777777777777764 45666777777777777777777666666667777777777


Q ss_pred             ccCcCccC
Q 035751           80 SYNRLWGR   87 (195)
Q Consensus        80 ~~N~l~g~   87 (195)
                      ++|.+++.
T Consensus       207 ~~N~l~~~  214 (306)
T 2z66_A          207 SHNNFFSL  214 (306)
T ss_dssp             TTSCCSBC
T ss_pred             CCCccCcc
Confidence            77777643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.53  E-value=2.2e-14  Score=118.62  Aligned_cols=110  Identities=25%  Similarity=0.303  Sum_probs=81.2

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|.++ .+| .+..+++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..+..+..+++|+.|+++
T Consensus       186 ~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  263 (440)
T 3zyj_A          186 NLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA  263 (440)
T ss_dssp             SCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred             ccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence            4677888888887 445 37788888888888888887778888888899999999999887778888888999999999


Q ss_pred             cCcCccCCCCC-CccCCCCcccccCCccccCCCCCCCCC
Q 035751           81 YNRLWGRIPRG-NQFNTFENDSYIGNIHLCGEPLTVTCS  118 (195)
Q Consensus        81 ~N~l~g~~p~~-~~~~~~~~~~~~~n~~l~~~~~~~~c~  118 (195)
                      +|.+++..+.. ..+..+..      ..+.+||+.|+|.
T Consensus       264 ~N~l~~~~~~~~~~l~~L~~------L~L~~Np~~CdC~  296 (440)
T 3zyj_A          264 HNNLTLLPHDLFTPLHHLER------IHLHHNPWNCNCD  296 (440)
T ss_dssp             TSCCCCCCTTTTSSCTTCCE------EECCSSCEECSST
T ss_pred             CCCCCccChhHhccccCCCE------EEcCCCCccCCCC
Confidence            99988444332 12233333      3455555666664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=3.3e-14  Score=103.54  Aligned_cols=89  Identities=25%  Similarity=0.236  Sum_probs=79.9

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            58999999999997777778999999999999999997777778999999999999999996655567889999999999


Q ss_pred             cCcCccCCC
Q 035751           81 YNRLWGRIP   89 (195)
Q Consensus        81 ~N~l~g~~p   89 (195)
                      +|++++..|
T Consensus       133 ~N~~~~~~~  141 (177)
T 2o6r_A          133 TNPWDCSCP  141 (177)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCeeccCc
Confidence            999997665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.53  E-value=5.5e-15  Score=117.22  Aligned_cols=90  Identities=28%  Similarity=0.543  Sum_probs=63.8

Q ss_pred             CccEEEecC-CcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751            1 MFRATDLSS-NRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l   79 (195)
                      +|++|++++ |.+.+.+|..|+.+++|++|+|++|.+++.+|..|..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus        77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  156 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence            366777774 7777677777777777777777777777667777777777777777777777667777777777777777


Q ss_pred             ccCcCccCCCC
Q 035751           80 SYNRLWGRIPR   90 (195)
Q Consensus        80 ~~N~l~g~~p~   90 (195)
                      ++|.+++.+|.
T Consensus       157 ~~N~l~~~~p~  167 (313)
T 1ogq_A          157 DGNRISGAIPD  167 (313)
T ss_dssp             CSSCCEEECCG
T ss_pred             cCCcccCcCCH
Confidence            77777666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=2.4e-14  Score=101.32  Aligned_cols=84  Identities=24%  Similarity=0.317  Sum_probs=77.5

Q ss_pred             CccEEEecCCcCC-CCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751            1 MFRATDLSSNRFC-GEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l   79 (195)
                      +|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            4789999999998 78898899999999999999999965  77899999999999999999778888888999999999


Q ss_pred             ccCcCcc
Q 035751           80 SYNRLWG   86 (195)
Q Consensus        80 ~~N~l~g   86 (195)
                      ++|.+++
T Consensus        96 s~N~i~~  102 (149)
T 2je0_A           96 SGNKIKD  102 (149)
T ss_dssp             TTSCCCS
T ss_pred             CCCcCCC
Confidence            9999985

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.52  E-value=1.1e-13  Score=107.61  Aligned_cols=87  Identities=29%  Similarity=0.285  Sum_probs=56.4

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.+++ + ..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        64 ~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  141 (272)
T 3rfs_A           64 NVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA  141 (272)
T ss_dssp             TCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC
Confidence            35667777777664 2 356666777777777777765555556667777777777777765555556666777777777


Q ss_pred             cCcCccCCC
Q 035751           81 YNRLWGRIP   89 (195)
Q Consensus        81 ~N~l~g~~p   89 (195)
                      +|.+++..+
T Consensus       142 ~n~l~~~~~  150 (272)
T 3rfs_A          142 HNQLQSLPK  150 (272)
T ss_dssp             SSCCCCCCT
T ss_pred             CCccCccCH
Confidence            776664433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.52  E-value=3.4e-14  Score=117.83  Aligned_cols=110  Identities=20%  Similarity=0.244  Sum_probs=82.9

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|.+++ +| .+..+++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..|..+..+++|+.|+++
T Consensus       197 ~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  274 (452)
T 3zyi_A          197 NLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA  274 (452)
T ss_dssp             TCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence            47788888888884 34 47788888999999999888888889999999999999999988888888889999999999


Q ss_pred             cCcCccCCCCC-CccCCCCcccccCCccccCCCCCCCCC
Q 035751           81 YNRLWGRIPRG-NQFNTFENDSYIGNIHLCGEPLTVTCS  118 (195)
Q Consensus        81 ~N~l~g~~p~~-~~~~~~~~~~~~~n~~l~~~~~~~~c~  118 (195)
                      +|.+++..+.. ..+..+..      ..+.+||+.|+|.
T Consensus       275 ~N~l~~~~~~~~~~l~~L~~------L~L~~Np~~CdC~  307 (452)
T 3zyi_A          275 HNNLSSLPHDLFTPLRYLVE------LHLHHNPWNCDCD  307 (452)
T ss_dssp             SSCCSCCCTTSSTTCTTCCE------EECCSSCEECSTT
T ss_pred             CCcCCccChHHhccccCCCE------EEccCCCcCCCCC
Confidence            99998444332 12233333      3455556666664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.51  E-value=4e-14  Score=102.16  Aligned_cols=103  Identities=21%  Similarity=0.246  Sum_probs=82.9

Q ss_pred             CccEEEecCCcCC-CCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751            1 MFRATDLSSNRFC-GEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l   79 (195)
                      +|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|+.|++
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            4789999999998 77888889999999999999999855  77899999999999999999778888888999999999


Q ss_pred             ccCcCccCC--CCCCccCCCCcccccCC
Q 035751           80 SYNRLWGRI--PRGNQFNTFENDSYIGN  105 (195)
Q Consensus        80 ~~N~l~g~~--p~~~~~~~~~~~~~~~n  105 (195)
                      ++|.+++..  +....+..+..+.+.+|
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N  130 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNC  130 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence            999998532  22223344444444444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.49  E-value=1.2e-13  Score=110.25  Aligned_cols=104  Identities=18%  Similarity=0.235  Sum_probs=79.9

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..+..+++|++|++++|.+.+.+|..+..+++|+.|+++
T Consensus       184 ~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~  261 (328)
T 4fcg_A          184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK  261 (328)
T ss_dssp             TCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred             CCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence            4788888888888 77888888888888888888888 456678888888888888888888888888888888888888


Q ss_pred             cCcCccCCCCC-CccCCCCcccccCCc
Q 035751           81 YNRLWGRIPRG-NQFNTFENDSYIGNI  106 (195)
Q Consensus        81 ~N~l~g~~p~~-~~~~~~~~~~~~~n~  106 (195)
                      +|.+.+.+|.. ..+..+..+.+.+|.
T Consensus       262 ~n~~~~~~p~~~~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          262 DCSNLLTLPLDIHRLTQLEKLDLRGCV  288 (328)
T ss_dssp             TCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred             CCCchhhcchhhhcCCCCCEEeCCCCC
Confidence            88888888764 223344444444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.49  E-value=1.2e-13  Score=110.26  Aligned_cols=104  Identities=17%  Similarity=0.212  Sum_probs=82.8

Q ss_pred             CccEEEecCCcCCCCcchhhcC---------CCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcC
Q 035751            1 MFRATDLSSNRFCGEIPKVLGN---------FKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSV   71 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~---------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l   71 (195)
                      +|++|+|++|++.+.+|..+..         +++|++|+|++|.++ .+|..+..+++|++|++++|.++ .+|..+..+
T Consensus       151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l  228 (328)
T 4fcg_A          151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHL  228 (328)
T ss_dssp             TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGC
T ss_pred             CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccC
Confidence            4788999998888888877654         889999999999988 78888889999999999999998 467778889


Q ss_pred             CCccEEEcccCcCccCCCCC-CccCCCCcccccCCc
Q 035751           72 TTLALLNLSYNRLWGRIPRG-NQFNTFENDSYIGNI  106 (195)
Q Consensus        72 ~~L~~L~l~~N~l~g~~p~~-~~~~~~~~~~~~~n~  106 (195)
                      ++|+.|++++|.+.+.+|.. ..+..+..+.+.+|.
T Consensus       229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~  264 (328)
T 4fcg_A          229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS  264 (328)
T ss_dssp             TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred             CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCC
Confidence            99999999998888888764 234445555554443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.49  E-value=5.4e-14  Score=119.21  Aligned_cols=113  Identities=26%  Similarity=0.347  Sum_probs=77.8

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCC-CCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLT-GNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l   79 (195)
                      +|++|++++|.+.+..|..+..+++|+.|++++|.++ +.+|..+..+++|++|++++|.+++..|..+..+++|+.|++
T Consensus       422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  501 (570)
T 2z63_A          422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  501 (570)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence            3667777777777667777777777777777777776 457777777788888888888877666777777788888888


Q ss_pred             ccCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751           80 SYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS  118 (195)
Q Consensus        80 ~~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~  118 (195)
                      ++|.+++..|..     +..+..+....+.++++.|+|.
T Consensus       502 ~~n~l~~~~~~~-----~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          502 ASNQLKSVPDGI-----FDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             CSSCCSCCCTTT-----TTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCcCCCCCHHH-----hhcccCCcEEEecCCcccCCCc
Confidence            888877554432     2222233344556666666664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.48  E-value=2.7e-13  Score=106.45  Aligned_cols=112  Identities=27%  Similarity=0.301  Sum_probs=84.0

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.|++..|..|..+++|++|+|++|.+++..+..|..+++|+.|++++|+++...+..+..+++|+.|+++
T Consensus       101 ~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  180 (290)
T 1p9a_G          101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (290)
T ss_dssp             TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECC
Confidence            47889999999987777888889999999999999987777778888999999999999985555566778899999999


Q ss_pred             cCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751           81 YNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS  118 (195)
Q Consensus        81 ~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~  118 (195)
                      +|.++ .+|....     ....+....+.+||+.|+|.
T Consensus       181 ~N~l~-~ip~~~~-----~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          181 ENSLY-TIPKGFF-----GSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             SSCCC-CCCTTTT-----TTCCCSEEECCSCCBCCSGG
T ss_pred             CCcCC-ccChhhc-----ccccCCeEEeCCCCccCcCc
Confidence            99988 5555311     11122334555666666664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.48  E-value=7e-14  Score=116.45  Aligned_cols=112  Identities=19%  Similarity=0.192  Sum_probs=88.3

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|.+++..+..+..+++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..|..+..+++|+.|+++
T Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  304 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS  304 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred             cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence            47889999999996555789999999999999999998888889999999999999999998889999999999999999


Q ss_pred             cCcCccCCCCC-CccCCCCcccccCCccccCCCCCCCCC
Q 035751           81 YNRLWGRIPRG-NQFNTFENDSYIGNIHLCGEPLTVTCS  118 (195)
Q Consensus        81 ~N~l~g~~p~~-~~~~~~~~~~~~~n~~l~~~~~~~~c~  118 (195)
                      +|.+++..+.. ..+..+..+      .+.+||+.|+|.
T Consensus       305 ~N~l~~~~~~~~~~l~~L~~L------~l~~N~l~c~c~  337 (477)
T 2id5_A          305 GNQLTTLEESVFHSVGNLETL------ILDSNPLACDCR  337 (477)
T ss_dssp             SSCCSCCCGGGBSCGGGCCEE------ECCSSCEECSGG
T ss_pred             CCcCceeCHhHcCCCcccCEE------EccCCCccCccc
Confidence            99998543321 122333444      444455555553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.48  E-value=8.9e-14  Score=122.47  Aligned_cols=89  Identities=43%  Similarity=0.582  Sum_probs=50.9

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |+.|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++
T Consensus       444 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  523 (768)
T 3rgz_A          444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN  523 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred             CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCC
Confidence            45555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CcCccCCCC
Q 035751           82 NRLWGRIPR   90 (195)
Q Consensus        82 N~l~g~~p~   90 (195)
                      |.++|.+|.
T Consensus       524 N~l~~~~p~  532 (768)
T 3rgz_A          524 NSFSGNIPA  532 (768)
T ss_dssp             SCCEEECCG
T ss_pred             CcccCcCCH
Confidence            555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.47  E-value=1.1e-13  Score=102.58  Aligned_cols=101  Identities=14%  Similarity=0.178  Sum_probs=76.1

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.++  .+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus        67 ~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~  144 (197)
T 4ezg_A           67 NIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS  144 (197)
T ss_dssp             TCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECC
T ss_pred             CCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEcc
Confidence            4788888888766  33468888889999999888887778888888889999999988887778888888888889988


Q ss_pred             cCc-CccCCCCCCccCCCCcccccC
Q 035751           81 YNR-LWGRIPRGNQFNTFENDSYIG  104 (195)
Q Consensus        81 ~N~-l~g~~p~~~~~~~~~~~~~~~  104 (195)
                      +|. ++ .+|....+..+..+.+.+
T Consensus       145 ~n~~i~-~~~~l~~l~~L~~L~l~~  168 (197)
T 4ezg_A          145 YNGAIT-DIMPLKTLPELKSLNIQF  168 (197)
T ss_dssp             SCTBCC-CCGGGGGCSSCCEEECTT
T ss_pred             CCCCcc-ccHhhcCCCCCCEEECCC
Confidence            887 54 555433334444444433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.47  E-value=8.5e-14  Score=100.42  Aligned_cols=87  Identities=23%  Similarity=0.203  Sum_probs=76.6

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCC-chhhhcCCCccEEEc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI-PKQLLSVTTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l   79 (195)
                      +|+.|++++|.+++.  ..+..+++|+.|++++|.+++.+|..+..+++|++|++++|.+++.. +..+..+++|+.|++
T Consensus        50 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l  127 (168)
T 2ell_A           50 NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL  127 (168)
T ss_dssp             GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred             CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence            478999999999965  77899999999999999999778888888999999999999998542 278889999999999


Q ss_pred             ccCcCccCCC
Q 035751           80 SYNRLWGRIP   89 (195)
Q Consensus        80 ~~N~l~g~~p   89 (195)
                      ++|.+++..+
T Consensus       128 ~~N~l~~~~~  137 (168)
T 2ell_A          128 FNCEVTNLND  137 (168)
T ss_dssp             CSSGGGTSTT
T ss_pred             eCCcCcchHH
Confidence            9999985443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.46  E-value=6.2e-13  Score=103.05  Aligned_cols=88  Identities=27%  Similarity=0.330  Sum_probs=68.9

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        62 ~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  141 (270)
T 2o6q_A           62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG  141 (270)
T ss_dssp             TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECC
Confidence            47788888888886555666788888888888888886666677888888888888888887666677788888888888


Q ss_pred             cCcCccCC
Q 035751           81 YNRLWGRI   88 (195)
Q Consensus        81 ~N~l~g~~   88 (195)
                      +|.+++..
T Consensus       142 ~n~l~~~~  149 (270)
T 2o6q_A          142 YNELQSLP  149 (270)
T ss_dssp             SSCCCCCC
T ss_pred             CCcCCccC
Confidence            88887433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.46  E-value=1.4e-13  Score=110.26  Aligned_cols=86  Identities=24%  Similarity=0.213  Sum_probs=76.6

Q ss_pred             CccEEEecC-CcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751            1 MFRATDLSS-NRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l   79 (195)
                      +|+.|+|++ |.|.+..+..|..|++|+.|+|++|.|++..|..|..|++|++|+|++|.|++..+..+..+. |+.|+|
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l  110 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL  110 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence            489999996 999988888999999999999999999999899999999999999999999965555555555 999999


Q ss_pred             ccCcCccC
Q 035751           80 SYNRLWGR   87 (195)
Q Consensus        80 ~~N~l~g~   87 (195)
                      .+|++.+.
T Consensus       111 ~~N~~~c~  118 (347)
T 2ifg_A          111 SGNPLHCS  118 (347)
T ss_dssp             CSSCCCCC
T ss_pred             eCCCccCC
Confidence            99999853

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.46  E-value=1e-13  Score=118.55  Aligned_cols=113  Identities=21%  Similarity=0.294  Sum_probs=68.1

Q ss_pred             ccEEEecCCcCCC-CcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            2 FRATDLSSNRFCG-EIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         2 L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      |++|++++|.+++ .+|..+..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus       450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~  529 (606)
T 3vq2_A          450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS  529 (606)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECC
Confidence            5566666666654 255556666666666666666666666666666666666666666666566666666666677777


Q ss_pred             cCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCCC
Q 035751           81 YNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSN  119 (195)
Q Consensus        81 ~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~~  119 (195)
                      +|.++ .+|..  +..+.  ..+....+.+||+.|+|..
T Consensus       530 ~N~l~-~~p~~--~~~l~--~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          530 FNRIE-TSKGI--LQHFP--KSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TSCCC-CEESC--GGGSC--TTCCEEECCSCCCCCSSTT
T ss_pred             CCcCc-ccCHh--Hhhhc--ccCcEEEccCCCcccCCcc
Confidence            66666 44443  11111  0123345667777777763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.45  E-value=7.2e-14  Score=98.86  Aligned_cols=87  Identities=22%  Similarity=0.194  Sum_probs=77.6

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCC-CchhhhcCCCccEEEc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR-IPKQLLSVTTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l   79 (195)
                      +|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|+.|++
T Consensus        43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l  120 (149)
T 2je0_A           43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL  120 (149)
T ss_dssp             TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred             CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence            589999999999966  7799999999999999999977898888899999999999999963 3478899999999999


Q ss_pred             ccCcCccCCC
Q 035751           80 SYNRLWGRIP   89 (195)
Q Consensus        80 ~~N~l~g~~p   89 (195)
                      ++|.+++..+
T Consensus       121 ~~N~l~~~~~  130 (149)
T 2je0_A          121 FNCEVTNLND  130 (149)
T ss_dssp             TTCGGGGSTT
T ss_pred             cCCcccchHH
Confidence            9999985543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.45  E-value=2.2e-13  Score=109.97  Aligned_cols=90  Identities=26%  Similarity=0.150  Sum_probs=80.5

Q ss_pred             CccEEEecCCcCCCCcchhhc-CCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751            1 MFRATDLSSNRFCGEIPKVLG-NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l   79 (195)
                      +++.|+|++|.|++..+..+. .+++|+.|+|++|.|++..+..|..+++|++|+|++|.|++..+..|..+++|+.|+|
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL  119 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence            368899999999987777787 9999999999999999777788999999999999999999777778999999999999


Q ss_pred             ccCcCccCCCC
Q 035751           80 SYNRLWGRIPR   90 (195)
Q Consensus        80 ~~N~l~g~~p~   90 (195)
                      ++|.+++..|.
T Consensus       120 ~~N~i~~~~~~  130 (361)
T 2xot_A          120 YNNHIVVVDRN  130 (361)
T ss_dssp             CSSCCCEECTT
T ss_pred             CCCcccEECHH
Confidence            99999866554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.45  E-value=6.5e-13  Score=103.55  Aligned_cols=84  Identities=25%  Similarity=0.252  Sum_probs=41.9

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCC-CCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNS-LTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      |++|++++|.+++..|..|..+++|++|++++|. ++...|..|..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus        58 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  137 (285)
T 1ozn_A           58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ  137 (285)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECC
Confidence            4445555555544444445555555555555554 443334445555555555555555554444444455555555555


Q ss_pred             cCcCc
Q 035751           81 YNRLW   85 (195)
Q Consensus        81 ~N~l~   85 (195)
                      +|.++
T Consensus       138 ~n~l~  142 (285)
T 1ozn_A          138 DNALQ  142 (285)
T ss_dssp             SSCCC
T ss_pred             CCccc
Confidence            55554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.44  E-value=3.4e-13  Score=115.10  Aligned_cols=99  Identities=25%  Similarity=0.276  Sum_probs=81.6

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |+.|+|++|.|++ +|. ++.+++|+.|+|++|.|+ .+|..++.+++|++|++++|.|++ +| .+..+++|+.|++++
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            6789999999995 676 899999999999999999 889999999999999999999995 67 788999999999999


Q ss_pred             CcCccCC-CCC-CccCCCCcccccCC
Q 035751           82 NRLWGRI-PRG-NQFNTFENDSYIGN  105 (195)
Q Consensus        82 N~l~g~~-p~~-~~~~~~~~~~~~~n  105 (195)
                      |.+++.. |.. ..+..+..+.+.+|
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCC
Confidence            9999765 543 23444454454444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.44  E-value=4.2e-13  Score=104.20  Aligned_cols=88  Identities=19%  Similarity=0.128  Sum_probs=60.9

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            36677777777776555567777777777777777775555567777777777777777776655666667777777777


Q ss_pred             cCcCccCC
Q 035751           81 YNRLWGRI   88 (195)
Q Consensus        81 ~N~l~g~~   88 (195)
                      +|.+++..
T Consensus       109 ~n~l~~~~  116 (276)
T 2z62_A          109 ETNLASLE  116 (276)
T ss_dssp             TSCCCCST
T ss_pred             CCCccccC
Confidence            77666433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.44  E-value=9.7e-14  Score=118.69  Aligned_cols=89  Identities=24%  Similarity=0.265  Sum_probs=59.6

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCC---CccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEE
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGN---IPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALL   77 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L   77 (195)
                      +|++|++++|.+++..|..+..+++|++|++++|.+++.   .+..+..+++|++|++++|.+++..|..+..+++|+.|
T Consensus       426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  505 (606)
T 3t6q_A          426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV  505 (606)
T ss_dssp             TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence            366777777777766666677777777777777776642   22456666777777777777766666666666777777


Q ss_pred             EcccCcCccCCC
Q 035751           78 NLSYNRLWGRIP   89 (195)
Q Consensus        78 ~l~~N~l~g~~p   89 (195)
                      ++++|.+++..|
T Consensus       506 ~Ls~N~l~~~~~  517 (606)
T 3t6q_A          506 DLSHNRLTSSSI  517 (606)
T ss_dssp             ECCSSCCCGGGG
T ss_pred             ECCCCccCcCCh
Confidence            777776665544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.43  E-value=4e-13  Score=110.99  Aligned_cols=105  Identities=23%  Similarity=0.272  Sum_probs=90.4

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  355 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS  355 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence            47899999999999899999999999999999999998888899999999999999999998888899999999999999


Q ss_pred             cCcCccCCCCC-CccCCCCcccccCC
Q 035751           81 YNRLWGRIPRG-NQFNTFENDSYIGN  105 (195)
Q Consensus        81 ~N~l~g~~p~~-~~~~~~~~~~~~~n  105 (195)
                      +|.+++..|.. ..+..+..+.+.+|
T Consensus       356 ~N~l~~~~~~~~~~l~~L~~L~L~~N  381 (455)
T 3v47_A          356 YNHIRALGDQSFLGLPNLKELALDTN  381 (455)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCcccccChhhccccccccEEECCCC
Confidence            99999776653 23344444444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.42  E-value=4.8e-13  Score=113.05  Aligned_cols=86  Identities=27%  Similarity=0.207  Sum_probs=76.7

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM  106 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence            47889999999998888889999999999999999998888889999999999999999997777778899999999999


Q ss_pred             cCcCcc
Q 035751           81 YNRLWG   86 (195)
Q Consensus        81 ~N~l~g   86 (195)
                      +|.+++
T Consensus       107 ~n~l~~  112 (549)
T 2z81_A          107 GNPYQT  112 (549)
T ss_dssp             TCCCSS
T ss_pred             CCcccc
Confidence            999885

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.42  E-value=1.1e-12  Score=104.21  Aligned_cols=83  Identities=25%  Similarity=0.294  Sum_probs=47.2

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++
T Consensus       194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~  272 (330)
T 1xku_A          194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN  272 (330)
T ss_dssp             CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCS
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCC
Confidence            455555555555544555555555555566555555444445555555556666555555 4555555555555566655


Q ss_pred             CcCc
Q 035751           82 NRLW   85 (195)
Q Consensus        82 N~l~   85 (195)
                      |.++
T Consensus       273 N~i~  276 (330)
T 1xku_A          273 NNIS  276 (330)
T ss_dssp             SCCC
T ss_pred             CcCC
Confidence            5555

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.42  E-value=5.1e-13  Score=98.93  Aligned_cols=101  Identities=16%  Similarity=0.118  Sum_probs=76.6

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            4788999999988 556 5888899999999999766  33478889999999999999987677888888999999999


Q ss_pred             cCcCccCCCC-CCccCCCCcccccCC
Q 035751           81 YNRLWGRIPR-GNQFNTFENDSYIGN  105 (195)
Q Consensus        81 ~N~l~g~~p~-~~~~~~~~~~~~~~n  105 (195)
                      +|.+++..|. ...+..+..+.+.+|
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n  146 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYN  146 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCC
Confidence            9998864443 123344444444444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.41  E-value=1.9e-13  Score=104.02  Aligned_cols=97  Identities=14%  Similarity=0.149  Sum_probs=79.9

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCC-CCCCCccccCCCCCCcEEeCCC-CcCCCCCchhhhcCCCccEEE
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNS-LTGNIPVSFDNMTALESLDLSF-NKLEGRIPKQLLSVTTLALLN   78 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~   78 (195)
                      +|++|++++|.+++..+..|..+++|++|++++|. ++...+..|..+++|++|++++ |.+++..+..+..+++|+.|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            47889999999997777789999999999999997 8866666889999999999998 999866667888899999999


Q ss_pred             cccCcCccCCCCCCccCCCC
Q 035751           79 LSYNRLWGRIPRGNQFNTFE   98 (195)
Q Consensus        79 l~~N~l~g~~p~~~~~~~~~   98 (195)
                      +++|.+++ +|....+..+.
T Consensus       112 l~~n~l~~-lp~~~~l~~L~  130 (239)
T 2xwt_C          112 IFNTGLKM-FPDLTKVYSTD  130 (239)
T ss_dssp             EEEECCCS-CCCCTTCCBCC
T ss_pred             CCCCCCcc-ccccccccccc
Confidence            99999985 66533344444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.41  E-value=5.5e-13  Score=113.83  Aligned_cols=88  Identities=32%  Similarity=0.415  Sum_probs=81.0

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCC-chhhhcCCCccEEEc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI-PKQLLSVTTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l   79 (195)
                      +|+.|+|++|.|+ .+|..++.+++|+.|+|++|.|++ +| .++.+++|++|++++|.|++.. |..+..+++|+.|++
T Consensus       464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L  540 (567)
T 1dce_A          464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL  540 (567)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence            5899999999999 889999999999999999999995 67 8999999999999999999776 999999999999999


Q ss_pred             ccCcCccCCCCC
Q 035751           80 SYNRLWGRIPRG   91 (195)
Q Consensus        80 ~~N~l~g~~p~~   91 (195)
                      ++|++++.+|..
T Consensus       541 ~~N~l~~~~~~~  552 (567)
T 1dce_A          541 QGNSLCQEEGIQ  552 (567)
T ss_dssp             TTSGGGGSSSCT
T ss_pred             cCCcCCCCccHH
Confidence            999999776643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.41  E-value=7.1e-13  Score=109.90  Aligned_cols=87  Identities=22%  Similarity=0.158  Sum_probs=76.5

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      ++++|+|++|.|++..|..|..+++|+.|+|++|.+++..|..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence            47889999999998888889999999999999999998888889999999999999999986666678889999999999


Q ss_pred             cCcCccC
Q 035751           81 YNRLWGR   87 (195)
Q Consensus        81 ~N~l~g~   87 (195)
                      +|.+++.
T Consensus       156 ~N~l~~~  162 (452)
T 3zyi_A          156 NNPIESI  162 (452)
T ss_dssp             SCCCCEE
T ss_pred             CCCccee
Confidence            9998843

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.41  E-value=5.6e-13  Score=113.95  Aligned_cols=85  Identities=16%  Similarity=0.086  Sum_probs=57.0

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      +++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus        35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  114 (606)
T 3t6q_A           35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ  114 (606)
T ss_dssp             CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTT
T ss_pred             CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccc
Confidence            56667777777666666666677777777777766666666666666777777776666655666666666666666666


Q ss_pred             CcCcc
Q 035751           82 NRLWG   86 (195)
Q Consensus        82 N~l~g   86 (195)
                      |.+++
T Consensus       115 n~i~~  119 (606)
T 3t6q_A          115 TGISS  119 (606)
T ss_dssp             SCCSC
T ss_pred             cCccc
Confidence            66654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.41  E-value=1.1e-12  Score=112.41  Aligned_cols=90  Identities=18%  Similarity=0.116  Sum_probs=66.7

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|.+++..|..|+.+++|+.|+|++|.+++..|..|+.+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls  155 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  155 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence            46777888888877666677778888888888888777777777777888888888887774444445777778888888


Q ss_pred             cCcCccCCCC
Q 035751           81 YNRLWGRIPR   90 (195)
Q Consensus        81 ~N~l~g~~p~   90 (195)
                      +|.+++..|.
T Consensus       156 ~N~l~~~~~~  165 (597)
T 3oja_B          156 NNNLERIEDD  165 (597)
T ss_dssp             SSCCCBCCTT
T ss_pred             CCcCCCCChh
Confidence            8877765554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.41  E-value=8.8e-13  Score=110.87  Aligned_cols=83  Identities=29%  Similarity=0.389  Sum_probs=46.5

Q ss_pred             ccEEEecCCcCCC--CcchhhcCCCCCcEEEccCCCCCCCCccc-cCCCCC----------------------CcEEeCC
Q 035751            2 FRATDLSSNRFCG--EIPKVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTA----------------------LESLDLS   56 (195)
Q Consensus         2 L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~----------------------L~~L~l~   56 (195)
                      |++|++++|.+++  .+|..+..+++|++|++++|.+++.+|.. +..+++                      |++|+++
T Consensus       350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls  429 (520)
T 2z7x_B          350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH  429 (520)
T ss_dssp             CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECC
T ss_pred             CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECC
Confidence            5666666666664  34455666666666666666666534432 444444                      5555555


Q ss_pred             CCcCCCCCchhhhcCCCccEEEcccCcCc
Q 035751           57 FNKLEGRIPKQLLSVTTLALLNLSYNRLW   85 (195)
Q Consensus        57 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~   85 (195)
                      +|.++ .+|..+..+++|+.|++++|.++
T Consensus       430 ~N~l~-~ip~~~~~l~~L~~L~L~~N~l~  457 (520)
T 2z7x_B          430 SNKIK-SIPKQVVKLEALQELNVASNQLK  457 (520)
T ss_dssp             SSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence            55554 44554555555666666666555

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.41  E-value=2e-13  Score=99.34  Aligned_cols=100  Identities=18%  Similarity=0.152  Sum_probs=75.8

Q ss_pred             CccEEEecCCcCCCCcchhhcCCC-CCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFK-SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l   79 (195)
                      +|+.|++++|.++ .+|. +..+. +|+.|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus        20 ~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           20 RDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             SCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            4789999999999 4555 44444 999999999999954  67899999999999999999655555688999999999


Q ss_pred             ccCcCccCCCC---CCccCCCCcccccCC
Q 035751           80 SYNRLWGRIPR---GNQFNTFENDSYIGN  105 (195)
Q Consensus        80 ~~N~l~g~~p~---~~~~~~~~~~~~~~n  105 (195)
                      ++|.++ .+|.   ...+..+..+.+.+|
T Consensus        96 ~~N~i~-~~~~~~~l~~l~~L~~L~l~~N  123 (176)
T 1a9n_A           96 TNNSLV-ELGDLDPLASLKSLTYLCILRN  123 (176)
T ss_dssp             CSCCCC-CGGGGGGGGGCTTCCEEECCSS
T ss_pred             CCCcCC-cchhhHhhhcCCCCCEEEecCC
Confidence            999996 4554   222334444444444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.41  E-value=7.6e-13  Score=106.26  Aligned_cols=104  Identities=24%  Similarity=0.227  Sum_probs=81.5

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            47889999999997666688999999999999999997777889999999999999999985555558889999999999


Q ss_pred             cCcCccCCCC---CCccCCCCcccccCC
Q 035751           81 YNRLWGRIPR---GNQFNTFENDSYIGN  105 (195)
Q Consensus        81 ~N~l~g~~p~---~~~~~~~~~~~~~~n  105 (195)
                      +|.++ .+|.   ...+..+..+.+.+|
T Consensus       133 ~n~l~-~l~~~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A          133 GNPYK-TLGETSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             TCCCS-SSCSSCSCTTCTTCCEEEEEES
T ss_pred             CCCCc-ccCchhhhccCCCCcEEECCCC
Confidence            99988 4544   223444444444444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.40  E-value=9.1e-13  Score=112.64  Aligned_cols=86  Identities=22%  Similarity=0.186  Sum_probs=57.0

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus        34 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  113 (606)
T 3vq2_A           34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE  113 (606)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTT
T ss_pred             cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccC
Confidence            56666777766665555666666667777766666655566666666666666666666655566666666666666666


Q ss_pred             CcCccC
Q 035751           82 NRLWGR   87 (195)
Q Consensus        82 N~l~g~   87 (195)
                      |.+++.
T Consensus       114 n~l~~~  119 (606)
T 3vq2_A          114 TKLASL  119 (606)
T ss_dssp             SCCCCS
T ss_pred             Cccccc
Confidence            666543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.40  E-value=1.8e-12  Score=105.38  Aligned_cols=90  Identities=18%  Similarity=0.116  Sum_probs=64.6

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|+.+++|++|++++|.++...+..+..+++|++|+++
T Consensus        70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  149 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  149 (390)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence            46777777777776666677777778888888877776666777777778888888777774333345677777777777


Q ss_pred             cCcCccCCCC
Q 035751           81 YNRLWGRIPR   90 (195)
Q Consensus        81 ~N~l~g~~p~   90 (195)
                      +|.+++..|.
T Consensus       150 ~n~l~~~~~~  159 (390)
T 3o6n_A          150 NNNLERIEDD  159 (390)
T ss_dssp             SSCCCBCCTT
T ss_pred             CCccCccChh
Confidence            7777755443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.39  E-value=9.5e-13  Score=102.15  Aligned_cols=84  Identities=19%  Similarity=0.146  Sum_probs=45.1

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  133 (276)
T 2z62_A           54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH  133 (276)
T ss_dssp             CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS
T ss_pred             CcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC
Confidence            45555655555544444555555555555555555544445555555555555555555543333444555555555555


Q ss_pred             CcCc
Q 035751           82 NRLW   85 (195)
Q Consensus        82 N~l~   85 (195)
                      |.++
T Consensus       134 n~l~  137 (276)
T 2z62_A          134 NLIQ  137 (276)
T ss_dssp             SCCC
T ss_pred             Cccc
Confidence            5554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.39  E-value=5.7e-13  Score=104.84  Aligned_cols=90  Identities=20%  Similarity=0.284  Sum_probs=66.8

Q ss_pred             CccEEEecCCcCCCCcc-hhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCC-CCchhhhcCCCccEEE
Q 035751            1 MFRATDLSSNRFCGEIP-KVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG-RIPKQLLSVTTLALLN   78 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~   78 (195)
                      +|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++|+.|+
T Consensus       102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  181 (306)
T 2z66_A          102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  181 (306)
T ss_dssp             TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence            46778888887775544 467777888888888888777777777778888888888887765 4667777778888888


Q ss_pred             cccCcCccCCCC
Q 035751           79 LSYNRLWGRIPR   90 (195)
Q Consensus        79 l~~N~l~g~~p~   90 (195)
                      +++|.+++..|.
T Consensus       182 Ls~n~l~~~~~~  193 (306)
T 2z66_A          182 LSQCQLEQLSPT  193 (306)
T ss_dssp             CTTSCCCEECTT
T ss_pred             CCCCCcCCcCHH
Confidence            888887765453

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.39  E-value=5.8e-13  Score=115.37  Aligned_cols=119  Identities=19%  Similarity=0.271  Sum_probs=78.5

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCC--------ccccCCCCCCcEEeCCCCcCCCCCchhhhcCC
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNI--------PVSFDNMTALESLDLSFNKLEGRIPKQLLSVT   72 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--------p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~   72 (195)
                      +|+.|++++|.+++..+..|..+++|+.|++++|.+++..        +..|..+++|++|++++|.++...+..+..++
T Consensus       481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~  560 (680)
T 1ziw_A          481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF  560 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence            4778888888888777777888888888888888877431        12367777888888888887743334577777


Q ss_pred             CccEEEcccCcCccCCCCC-CccCCCCcccc-------------------cCCccccCCCCCCCCCC
Q 035751           73 TLALLNLSYNRLWGRIPRG-NQFNTFENDSY-------------------IGNIHLCGEPLTVTCSN  119 (195)
Q Consensus        73 ~L~~L~l~~N~l~g~~p~~-~~~~~~~~~~~-------------------~~n~~l~~~~~~~~c~~  119 (195)
                      +|+.|++++|.+++..+.. ..+..+..+.+                   +....+.+||+.|+|..
T Consensus       561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            7888888888777433321 12222222222                   22345668889988874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.39  E-value=8.8e-13  Score=115.58  Aligned_cols=101  Identities=29%  Similarity=0.391  Sum_probs=78.6

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|..+++|++|+|++|.|+ .+|..+..+++|++|+|+
T Consensus       225 ~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~  301 (727)
T 4b8c_D          225 LWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF  301 (727)
T ss_dssp             CCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred             CCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence            4778889998888 67777778888999999999888 78888888889999999999888 778888888889999999


Q ss_pred             cCcCccCCCCC-CccCCCCcccccCC
Q 035751           81 YNRLWGRIPRG-NQFNTFENDSYIGN  105 (195)
Q Consensus        81 ~N~l~g~~p~~-~~~~~~~~~~~~~n  105 (195)
                      +|.|+ .+|.. ..+..+..+.+.+|
T Consensus       302 ~N~l~-~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          302 DNMVT-TLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             SSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred             CCCCC-ccChhhhcCCCccEEeCCCC
Confidence            88887 66653 22334444444333

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.39  E-value=1.4e-12  Score=110.94  Aligned_cols=112  Identities=27%  Similarity=0.376  Sum_probs=59.1

Q ss_pred             CccEEEecCCcCCCC--cchhhcCCCCCcEEEccCCCCCCCCcc-ccCCCC----------------------CCcEEeC
Q 035751            1 MFRATDLSSNRFCGE--IPKVLGNFKSLKVLNLSHNSLTGNIPV-SFDNMT----------------------ALESLDL   55 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~----------------------~L~~L~l   55 (195)
                      +|++|++++|.+++.  +|..+..+++|+.|++++|.+++.+|. .+..++                      +|++|++
T Consensus       378 ~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L  457 (562)
T 3a79_B          378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDL  457 (562)
T ss_dssp             SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEEC
T ss_pred             CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEEC
Confidence            356677777777642  234566667777777777776653443 244444                      4555555


Q ss_pred             CCCcCCCCCchhhhcCCCccEEEcccCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751           56 SFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS  118 (195)
Q Consensus        56 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~  118 (195)
                      ++|+++ .+|..+..+++|+.|++++|.++ .+|..    .+..+..+....+.+||+.|+|.
T Consensus       458 ~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~----~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          458 HNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDG----VFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTT----STTTCTTCCCEECCSCCBCCCHH
T ss_pred             CCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHH----HHhcCCCCCEEEecCCCcCCCcc
Confidence            555554 44444445566666666666665 34432    11222222233445555555553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.39  E-value=2.1e-12  Score=111.59  Aligned_cols=87  Identities=18%  Similarity=0.284  Sum_probs=52.7

Q ss_pred             ccEEEecCCcCCCCcchhhc--CCCCCcEEEccCCCCCCCCccccCCCCCCcEEeC------CCCcCCCCCchhhhcCCC
Q 035751            2 FRATDLSSNRFCGEIPKVLG--NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDL------SFNKLEGRIPKQLLSVTT   73 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l------~~N~l~~~~p~~~~~l~~   73 (195)
                      |+.|+|++|.++ .+|..+.  .+++|+.|+|++|.+++ +|..+..+++|++|++      ++|.+.+.+|..+..+++
T Consensus       490 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~  567 (636)
T 4eco_A          490 LTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS  567 (636)
T ss_dssp             CCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSS
T ss_pred             ccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCC
Confidence            556666666666 4555554  66666666666666664 5666666666666666      345555566666666666


Q ss_pred             ccEEEcccCcCccCCCCC
Q 035751           74 LALLNLSYNRLWGRIPRG   91 (195)
Q Consensus        74 L~~L~l~~N~l~g~~p~~   91 (195)
                      |+.|++++|.+ +.+|..
T Consensus       568 L~~L~Ls~N~l-~~ip~~  584 (636)
T 4eco_A          568 LTQLQIGSNDI-RKVNEK  584 (636)
T ss_dssp             CCEEECCSSCC-CBCCSC
T ss_pred             CCEEECCCCcC-CccCHh
Confidence            66666666666 355543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.39  E-value=1.3e-12  Score=108.78  Aligned_cols=86  Identities=26%  Similarity=0.291  Sum_probs=46.7

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      ++.|+|++|.+++..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|.++...+..+..+++|++|++++
T Consensus        34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  113 (477)
T 2id5_A           34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE  113 (477)
T ss_dssp             CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT
T ss_pred             CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC
Confidence            45555555555555455555555555555555555555455555555555555555555533333444555555555555


Q ss_pred             CcCccC
Q 035751           82 NRLWGR   87 (195)
Q Consensus        82 N~l~g~   87 (195)
                      |.+++.
T Consensus       114 n~i~~~  119 (477)
T 2id5_A          114 NKIVIL  119 (477)
T ss_dssp             SCCCEE
T ss_pred             CccccC
Confidence            555433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.38  E-value=3.9e-13  Score=116.14  Aligned_cols=89  Identities=16%  Similarity=0.360  Sum_probs=56.0

Q ss_pred             CccEEEecCCcCCCC-----------------cchhhc--CCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCc-C
Q 035751            1 MFRATDLSSNRFCGE-----------------IPKVLG--NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNK-L   60 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~-----------------~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~-l   60 (195)
                      +|++|+|++|.+++.                 +|..++  .+++|++|+|++|.+.+.+|..|+.+++|++|++++|. +
T Consensus       207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l  286 (636)
T 4eco_A          207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI  286 (636)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence            366677777777654                 666666  67777777777777666677667777777777777766 6


Q ss_pred             CC-CCchhhhcC------CCccEEEcccCcCccCCCC
Q 035751           61 EG-RIPKQLLSV------TTLALLNLSYNRLWGRIPR   90 (195)
Q Consensus        61 ~~-~~p~~~~~l------~~L~~L~l~~N~l~g~~p~   90 (195)
                      ++ .+|..+..+      ++|+.|++++|.++ .+|.
T Consensus       287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~  322 (636)
T 4eco_A          287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV  322 (636)
T ss_dssp             CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred             ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence            65 455555443      55555555555555 4443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.38  E-value=1.2e-12  Score=95.12  Aligned_cols=86  Identities=22%  Similarity=0.179  Sum_probs=73.7

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCch--hhhcCCCccEEE
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK--QLLSVTTLALLN   78 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~--~~~~l~~L~~L~   78 (195)
                      +|+.|++++|.+++.  ..+..+++|++|+|++|.+++..+..|..+++|++|++++|.++ .+|.  .+..+++|+.|+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence            588999999999964  67899999999999999999655555689999999999999997 5666  788999999999


Q ss_pred             cccCcCccCCCC
Q 035751           79 LSYNRLWGRIPR   90 (195)
Q Consensus        79 l~~N~l~g~~p~   90 (195)
                      +++|+++ .+|.
T Consensus       120 l~~N~i~-~~~~  130 (176)
T 1a9n_A          120 ILRNPVT-NKKH  130 (176)
T ss_dssp             CCSSGGG-GSTT
T ss_pred             ecCCCCC-CcHh
Confidence            9999998 4443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.38  E-value=1.3e-12  Score=103.96  Aligned_cols=84  Identities=25%  Similarity=0.275  Sum_probs=59.7

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++
T Consensus       195 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~  273 (332)
T 2ft3_A          195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT  273 (332)
T ss_dssp             CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCS
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCC
Confidence            566677777777666666777777777777777777666666777777777777777776 6666677777777777777


Q ss_pred             CcCcc
Q 035751           82 NRLWG   86 (195)
Q Consensus        82 N~l~g   86 (195)
                      |.+++
T Consensus       274 N~l~~  278 (332)
T 2ft3_A          274 NNITK  278 (332)
T ss_dssp             SCCCB
T ss_pred             CCCCc
Confidence            77763

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.37  E-value=1.9e-13  Score=108.13  Aligned_cols=86  Identities=21%  Similarity=0.211  Sum_probs=60.7

Q ss_pred             CccEEEecCCcCCCCcchhh--cCCCCCcEEEccCCCCCCCCccccCCC-----CCCcEEeCCCCcCCCCCchhhhcCCC
Q 035751            1 MFRATDLSSNRFCGEIPKVL--GNFKSLKVLNLSHNSLTGNIPVSFDNM-----TALESLDLSFNKLEGRIPKQLLSVTT   73 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~l~~N~l~~~~p~~~~~l~~   73 (195)
                      +|++|+|++|.+++.+|..+  ..+++|+.|+|++|.+++. |..+..+     ++|++|++++|.+++..|..+..+++
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA  174 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence            36777777777777777665  6777777777777777755 6666655     67777777777777666667777777


Q ss_pred             ccEEEcccCcCccC
Q 035751           74 LALLNLSYNRLWGR   87 (195)
Q Consensus        74 L~~L~l~~N~l~g~   87 (195)
                      |++|++++|.+.+.
T Consensus       175 L~~L~Ls~N~l~~~  188 (312)
T 1wwl_A          175 LSTLDLSDNPELGE  188 (312)
T ss_dssp             CCEEECCSCTTCHH
T ss_pred             CCEEECCCCCcCcc
Confidence            77777777776543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.37  E-value=2.3e-13  Score=119.27  Aligned_cols=87  Identities=25%  Similarity=0.391  Sum_probs=79.9

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|.|+ .+|..|+.|++|++|+|++|.|+ .+|..|+.|++|++|+|++|.|+ .+|..|..+++|+.|+|+
T Consensus       248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred             CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence            4789999999999 88999999999999999999999 88999999999999999999998 788889999999999999


Q ss_pred             cCcCccCCCC
Q 035751           81 YNRLWGRIPR   90 (195)
Q Consensus        81 ~N~l~g~~p~   90 (195)
                      +|.+++.+|.
T Consensus       325 ~N~l~~~~p~  334 (727)
T 4b8c_D          325 GNPLEKQFLK  334 (727)
T ss_dssp             TSCCCSHHHH
T ss_pred             CCccCCCChH
Confidence            9999876553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.37  E-value=1.9e-12  Score=106.99  Aligned_cols=87  Identities=21%  Similarity=0.196  Sum_probs=68.7

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +++.|+|++|.+++..+..|..+++|++|+|++|.++...+..|..+++|++|++++|.++...+..+..+++|+.|+++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            36778888888887777788888888888888888887777778888888888888888885555567778888888888


Q ss_pred             cCcCccC
Q 035751           81 YNRLWGR   87 (195)
Q Consensus        81 ~N~l~g~   87 (195)
                      +|.+++.
T Consensus       145 ~N~i~~~  151 (440)
T 3zyj_A          145 NNPIESI  151 (440)
T ss_dssp             SCCCCEE
T ss_pred             CCccccc
Confidence            8887743

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.37  E-value=9.9e-13  Score=110.29  Aligned_cols=104  Identities=25%  Similarity=0.196  Sum_probs=62.3

Q ss_pred             ccEEEecCCcCCCCcchhhc-CCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            2 FRATDLSSNRFCGEIPKVLG-NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      |++|+|++|.+++..|..+. .+++|+.|+|++|.+++. | .+..+++|++|++++|.+++. |..+..+++|+.|+++
T Consensus       146 L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls  222 (487)
T 3oja_A          146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLR  222 (487)
T ss_dssp             EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECT
T ss_pred             CCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEec
Confidence            45556666666555555554 456666666666666533 2 223467777777777777743 4447777788888888


Q ss_pred             cCcCccCCCCC-CccCCCCcccccCCcccc
Q 035751           81 YNRLWGRIPRG-NQFNTFENDSYIGNIHLC  109 (195)
Q Consensus        81 ~N~l~g~~p~~-~~~~~~~~~~~~~n~~l~  109 (195)
                      +|.+++ +|.. ..+..+..+.+.+|+..|
T Consensus       223 ~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c  251 (487)
T 3oja_A          223 NNKLVL-IEKALRFSQNLEHFDLRGNGFHC  251 (487)
T ss_dssp             TSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred             CCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence            888875 4432 333455555566665554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.36  E-value=1.1e-12  Score=116.52  Aligned_cols=87  Identities=22%  Similarity=0.175  Sum_probs=45.7

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCC-ccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNI-PVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      |++|||++|.|++..|..|..+++|++|+|++|.+.+.+ |..|..+++|++|+|++|.+++..|..+..+++|++|+++
T Consensus        26 l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  105 (844)
T 3j0a_A           26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY  105 (844)
T ss_dssp             CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECT
T ss_pred             cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCc
Confidence            556666666666555555555555555555555333233 4445555555555555555554445555555555555555


Q ss_pred             cCcCccCC
Q 035751           81 YNRLWGRI   88 (195)
Q Consensus        81 ~N~l~g~~   88 (195)
                      +|.+++.+
T Consensus       106 ~n~l~~~~  113 (844)
T 3j0a_A          106 FCGLSDAV  113 (844)
T ss_dssp             TCCCSSCC
T ss_pred             CCCCCccc
Confidence            55554433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.36  E-value=3.8e-12  Score=109.07  Aligned_cols=87  Identities=30%  Similarity=0.254  Sum_probs=80.1

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|.+++..|..|+.+++|++|+|++|.+++..+..|+.+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus       100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  179 (597)
T 3oja_B          100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  179 (597)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred             CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence            58999999999998888889999999999999999996666668999999999999999998888889999999999999


Q ss_pred             cCcCccC
Q 035751           81 YNRLWGR   87 (195)
Q Consensus        81 ~N~l~g~   87 (195)
                      +|.+++.
T Consensus       180 ~N~l~~~  186 (597)
T 3oja_B          180 SNRLTHV  186 (597)
T ss_dssp             TSCCSBC
T ss_pred             CCCCCCc
Confidence            9999854

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.35  E-value=1.2e-12  Score=110.15  Aligned_cols=86  Identities=28%  Similarity=0.269  Sum_probs=67.1

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|.++ .+|..  .+++|++|+++
T Consensus        22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~   98 (520)
T 2z7x_B           22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLS   98 (520)
T ss_dssp             TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECC
T ss_pred             cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEecc
Confidence            4678888888888777778888888888888888888777778888888888888888887 55655  67788888888


Q ss_pred             cCcCcc-CCC
Q 035751           81 YNRLWG-RIP   89 (195)
Q Consensus        81 ~N~l~g-~~p   89 (195)
                      +|.+++ .+|
T Consensus        99 ~N~l~~~~~p  108 (520)
T 2z7x_B           99 FNAFDALPIC  108 (520)
T ss_dssp             SSCCSSCCCC
T ss_pred             CCccccccch
Confidence            888875 344

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.35  E-value=3.6e-12  Score=110.38  Aligned_cols=87  Identities=28%  Similarity=0.295  Sum_probs=42.9

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |++|+|++|.+++..|..|+.+++|++|+|++|.++...+..|+.+++|++|++++|.+++..|..+..+++|++|++++
T Consensus        51 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  130 (680)
T 1ziw_A           51 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH  130 (680)
T ss_dssp             CSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCS
T ss_pred             CcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCC
Confidence            44445555555444444444555555555555555433333455555555555555555444444455555555555555


Q ss_pred             CcCccCC
Q 035751           82 NRLWGRI   88 (195)
Q Consensus        82 N~l~g~~   88 (195)
                      |.+++..
T Consensus       131 n~l~~~~  137 (680)
T 1ziw_A          131 NGLSSTK  137 (680)
T ss_dssp             SCCSCCC
T ss_pred             CcccccC
Confidence            5554433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.35  E-value=5.2e-12  Score=102.61  Aligned_cols=87  Identities=30%  Similarity=0.254  Sum_probs=78.5

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|.+++..|..|..+++|++|+|++|.++...+..|..+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus        94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  173 (390)
T 3o6n_A           94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  173 (390)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred             CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence            58999999999998888889999999999999999995555557999999999999999998778889999999999999


Q ss_pred             cCcCccC
Q 035751           81 YNRLWGR   87 (195)
Q Consensus        81 ~N~l~g~   87 (195)
                      +|.+++.
T Consensus       174 ~n~l~~~  180 (390)
T 3o6n_A          174 SNRLTHV  180 (390)
T ss_dssp             SSCCSBC
T ss_pred             CCcCCcc
Confidence            9999853

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.34  E-value=2.4e-12  Score=109.38  Aligned_cols=83  Identities=30%  Similarity=0.279  Sum_probs=65.9

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|.++ .+|..  .+++|++|+++
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS  129 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred             CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence            4678888888888777778888888888888888888777777888888888888888887 55655  67788888888


Q ss_pred             cCcCcc
Q 035751           81 YNRLWG   86 (195)
Q Consensus        81 ~N~l~g   86 (195)
                      +|.+++
T Consensus       130 ~N~l~~  135 (562)
T 3a79_B          130 FNDFDV  135 (562)
T ss_dssp             SSCCSB
T ss_pred             CCCccc
Confidence            888774

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.34  E-value=3.4e-12  Score=108.09  Aligned_cols=86  Identities=20%  Similarity=0.150  Sum_probs=62.1

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      ++++|++++|.+++..+..|..+++|+.|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  108 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence            35677777777776666677777777777777777776666667777777777777777776666667777777777777


Q ss_pred             cCcCcc
Q 035751           81 YNRLWG   86 (195)
Q Consensus        81 ~N~l~g   86 (195)
                      +|.+++
T Consensus       109 ~n~l~~  114 (570)
T 2z63_A          109 ETNLAS  114 (570)
T ss_dssp             TSCCCC
T ss_pred             cccccc
Confidence            777663

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.33  E-value=2.3e-12  Score=101.96  Aligned_cols=83  Identities=24%  Similarity=0.247  Sum_probs=38.4

Q ss_pred             ccEEEecCCcCCCCcchhhcCC-----CCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCC--Cchhh--hcCC
Q 035751            2 FRATDLSSNRFCGEIPKVLGNF-----KSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR--IPKQL--LSVT   72 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~--~p~~~--~~l~   72 (195)
                      |++|+|++|.+++. |..+..+     ++|++|+|++|.+++..|..|+.+++|++|++++|.+.+.  .|..+  ..++
T Consensus       123 L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~  201 (312)
T 1wwl_A          123 LNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP  201 (312)
T ss_dssp             CSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT
T ss_pred             ccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCC
Confidence            44555555555543 4444443     4555555555555544444455555555555555544332  12222  3344


Q ss_pred             CccEEEcccCcCc
Q 035751           73 TLALLNLSYNRLW   85 (195)
Q Consensus        73 ~L~~L~l~~N~l~   85 (195)
                      +|+.|++++|.++
T Consensus       202 ~L~~L~L~~N~l~  214 (312)
T 1wwl_A          202 TLQVLALRNAGME  214 (312)
T ss_dssp             TCCEEECTTSCCC
T ss_pred             CCCEEECCCCcCc
Confidence            4444444444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.32  E-value=2.1e-12  Score=109.08  Aligned_cols=89  Identities=21%  Similarity=0.222  Sum_probs=75.5

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCC-CchhhhcCCCccEEEc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR-IPKQLLSVTTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l   79 (195)
                      +|++|++++|.+++..|..|..+++|++|+|++|.+++..|..|+.+++|++|++++|.+++. .|..+..+++|++|++
T Consensus        51 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L  130 (549)
T 2z81_A           51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI  130 (549)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred             cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEEC
Confidence            478999999999988888899999999999999999977777789999999999999998863 5667888889999999


Q ss_pred             ccCcCccCCC
Q 035751           80 SYNRLWGRIP   89 (195)
Q Consensus        80 ~~N~l~g~~p   89 (195)
                      ++|.+.+.+|
T Consensus       131 ~~n~~~~~~~  140 (549)
T 2z81_A          131 GNVETFSEIR  140 (549)
T ss_dssp             EESSSCCEEC
T ss_pred             CCCccccccC
Confidence            9888555555

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.32  E-value=1.1e-12  Score=116.76  Aligned_cols=89  Identities=17%  Similarity=0.312  Sum_probs=53.7

Q ss_pred             CccEEEecCCcCCC-----------------Ccchhhc--CCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCc-C
Q 035751            1 MFRATDLSSNRFCG-----------------EIPKVLG--NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNK-L   60 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~-----------------~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~-l   60 (195)
                      +|++|+|++|.|++                 .+|..++  .+++|+.|+|++|.+.+.+|..|+.+++|++|++++|. +
T Consensus       449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l  528 (876)
T 4ecn_A          449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI  528 (876)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence            35666666666665                 2666655  66666666666666666666666666666666666665 6


Q ss_pred             CC-CCchhhhcCC-------CccEEEcccCcCccCCCC
Q 035751           61 EG-RIPKQLLSVT-------TLALLNLSYNRLWGRIPR   90 (195)
Q Consensus        61 ~~-~~p~~~~~l~-------~L~~L~l~~N~l~g~~p~   90 (195)
                      ++ .+|..+..++       +|+.|++++|.++ .+|.
T Consensus       529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~  565 (876)
T 4ecn_A          529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPA  565 (876)
T ss_dssp             CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCC
T ss_pred             ccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCC
Confidence            55 4555444333       5555555555555 4443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.31  E-value=9.6e-12  Score=110.80  Aligned_cols=86  Identities=26%  Similarity=0.383  Sum_probs=46.8

Q ss_pred             ccEEEecCCcCCCCcchhhcCC--------CCCcEEEccCCCCCCCCccccC--CCCCCcEEeCCCCcCCCCCchhhhcC
Q 035751            2 FRATDLSSNRFCGEIPKVLGNF--------KSLKVLNLSHNSLTGNIPVSFD--NMTALESLDLSFNKLEGRIPKQLLSV   71 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l--------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~l~~N~l~~~~p~~~~~l   71 (195)
                      |+.|+|++|.++ .+|..+...        ++|+.|+|++|.++ .+|..+.  .+++|+.|++++|.+++ +|..+..+
T Consensus       699 L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L  775 (876)
T 4ecn_A          699 ISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNS  775 (876)
T ss_dssp             CSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred             CCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcC
Confidence            555666666665 444332221        15666666666665 4555554  55666666666666654 45555556


Q ss_pred             CCccEEEccc------CcCccCCCC
Q 035751           72 TTLALLNLSY------NRLWGRIPR   90 (195)
Q Consensus        72 ~~L~~L~l~~------N~l~g~~p~   90 (195)
                      ++|+.|++++      |.+.+.+|.
T Consensus       776 ~~L~~L~Ls~N~~ls~N~l~~~ip~  800 (876)
T 4ecn_A          776 SQLKAFGIRHQRDAEGNRILRQWPT  800 (876)
T ss_dssp             TTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred             CCCCEEECCCCCCcccccccccChH
Confidence            6666666544      445555553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.31  E-value=6.2e-12  Score=100.11  Aligned_cols=81  Identities=25%  Similarity=0.290  Sum_probs=52.9

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |+.|++++|.+++..|..|..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..+.  ++|++|++++
T Consensus        56 l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~  132 (332)
T 2ft3_A           56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHD  132 (332)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCS
T ss_pred             CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCC
Confidence            566777777777655666777777777777777777666667777777777777777666 4444332  4555555555


Q ss_pred             CcCc
Q 035751           82 NRLW   85 (195)
Q Consensus        82 N~l~   85 (195)
                      |.++
T Consensus       133 n~i~  136 (332)
T 2ft3_A          133 NRIR  136 (332)
T ss_dssp             SCCC
T ss_pred             CccC
Confidence            5554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.30  E-value=1.5e-12  Score=109.25  Aligned_cols=87  Identities=21%  Similarity=0.151  Sum_probs=52.8

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccC-CCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFD-NMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      |+.|+|++|.+++..|..++.+++|+.|+|++|.+++..|..+. .+++|++|++++|.+++. |. ...+++|+.|+++
T Consensus       122 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls  199 (487)
T 3oja_A          122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLS  199 (487)
T ss_dssp             CEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECC
T ss_pred             CCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECC
Confidence            45566666666655565666666666666666666655555554 566666666666666643 22 2246666777777


Q ss_pred             cCcCccCCCC
Q 035751           81 YNRLWGRIPR   90 (195)
Q Consensus        81 ~N~l~g~~p~   90 (195)
                      +|.+++..|.
T Consensus       200 ~N~l~~~~~~  209 (487)
T 3oja_A          200 SNKLAFMGPE  209 (487)
T ss_dssp             SSCCCEECGG
T ss_pred             CCCCCCCCHh
Confidence            7776654443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.30  E-value=5.2e-12  Score=100.09  Aligned_cols=82  Identities=21%  Similarity=0.173  Sum_probs=41.8

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCcccc-CCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSF-DNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      |++|++++|.+++..+..+..+++|+.|++++|.+++..+..+ ..+++|++|++++|.+++. +. ...+++|+.|+++
T Consensus       122 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls  199 (317)
T 3o53_A          122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLS  199 (317)
T ss_dssp             CEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECC
T ss_pred             CCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECC
Confidence            4556666666655545555555556666666665554444443 2445555555555555422 21 1224445555555


Q ss_pred             cCcCc
Q 035751           81 YNRLW   85 (195)
Q Consensus        81 ~N~l~   85 (195)
                      +|.++
T Consensus       200 ~N~l~  204 (317)
T 3o53_A          200 SNKLA  204 (317)
T ss_dssp             SSCCC
T ss_pred             CCcCC
Confidence            55554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.29  E-value=4.8e-12  Score=99.92  Aligned_cols=86  Identities=19%  Similarity=0.153  Sum_probs=72.1

Q ss_pred             CccEEEecCCcCCCCcchhh--cCCCCCcEEEccCCCCCCCCc----cccCCCCCCcEEeCCCCcCCCCCchhhhcCCCc
Q 035751            1 MFRATDLSSNRFCGEIPKVL--GNFKSLKVLNLSHNSLTGNIP----VSFDNMTALESLDLSFNKLEGRIPKQLLSVTTL   74 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L   74 (195)
                      +|++|++++|.+.+..|..+  ..+++|++|+|++|.+++..+    ..+..+++|++|++++|.+++..+..+..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            37889999999998888887  888999999999999886555    345578899999999999987777888888999


Q ss_pred             cEEEcccCcCcc
Q 035751           75 ALLNLSYNRLWG   86 (195)
Q Consensus        75 ~~L~l~~N~l~g   86 (195)
                      ++|++++|.+.+
T Consensus       172 ~~L~Ls~N~l~~  183 (310)
T 4glp_A          172 TSLDLSDNPGLG  183 (310)
T ss_dssp             CEEECCSCTTCH
T ss_pred             CEEECCCCCCcc
Confidence            999999998764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.28  E-value=6e-12  Score=101.00  Aligned_cols=85  Identities=22%  Similarity=0.203  Sum_probs=67.6

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCch--hhhcCCCccEEE
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK--QLLSVTTLALLN   78 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~--~~~~l~~L~~L~   78 (195)
                      +|++|++++|.+++..|..|..+++|++|++++|.+++..+..|..+++|++|++++|.++. +|.  .+..+++|+.|+
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~  155 (353)
T 2z80_A           77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILR  155 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEE
T ss_pred             CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEE
Confidence            47888888888887777788888889999998888885555558888888888888888884 444  677888888888


Q ss_pred             cccCc-Ccc
Q 035751           79 LSYNR-LWG   86 (195)
Q Consensus        79 l~~N~-l~g   86 (195)
                      +++|. +++
T Consensus       156 l~~n~~~~~  164 (353)
T 2z80_A          156 VGNMDTFTK  164 (353)
T ss_dssp             EEESSSCCE
T ss_pred             CCCCccccc
Confidence            88884 543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.28  E-value=3.3e-11  Score=95.70  Aligned_cols=66  Identities=30%  Similarity=0.390  Sum_probs=39.0

Q ss_pred             CCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcCccCCCC
Q 035751           24 KSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPR   90 (195)
Q Consensus        24 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~   90 (195)
                      ++|+.|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|.
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~  257 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG  257 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCCh
Confidence            44455555555555444555666666666666666666555555666666666666666666 4443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.27  E-value=1.6e-11  Score=98.05  Aligned_cols=83  Identities=20%  Similarity=0.292  Sum_probs=50.4

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.+++..+  +..+++|++|++++|.++..  +.+..+++|++|++++|.+++.  ..+..+++|+.|+++
T Consensus       222 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~  295 (347)
T 4fmz_A          222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLN  295 (347)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred             cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECc
Confidence            35667777777664333  66666677777766666632  3456666666666666666632  345566666666666


Q ss_pred             cCcCccCCC
Q 035751           81 YNRLWGRIP   89 (195)
Q Consensus        81 ~N~l~g~~p   89 (195)
                      +|.+++..|
T Consensus       296 ~n~l~~~~~  304 (347)
T 4fmz_A          296 NNQLGNEDM  304 (347)
T ss_dssp             SSCCCGGGH
T ss_pred             CCcCCCcCh
Confidence            666654433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.27  E-value=4.3e-12  Score=100.21  Aligned_cols=102  Identities=25%  Similarity=0.270  Sum_probs=72.0

Q ss_pred             CccEEEecCCcCCCC--cc--hhhcCCCCCcEEEccCCCCCCCCcc----ccCCCCCCcEEeCCCCcCCCCCchhhhcC-
Q 035751            1 MFRATDLSSNRFCGE--IP--KVLGNFKSLKVLNLSHNSLTGNIPV----SFDNMTALESLDLSFNKLEGRIPKQLLSV-   71 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~--~p--~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~l~~N~l~~~~p~~~~~l-   71 (195)
                      +|++|+|++|.+.+.  ++  ..+..+++|++|+|++|.++ .++.    .+..+++|++|++++|.+++..|..+..+ 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            478899999987642  22  22367888888899988887 3343    25677888888999888887777776665 


Q ss_pred             --CCccEEEcccCcCccCCCCCCccCCCCcccccCC
Q 035751           72 --TTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGN  105 (195)
Q Consensus        72 --~~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~n  105 (195)
                        ++|++|++++|.++ .+|.... ..+..+.+.+|
T Consensus       249 ~~~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N  282 (310)
T 4glp_A          249 WSSALNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSN  282 (310)
T ss_dssp             CCTTCCCEECCSSCCC-SCCSCCC-SCCSCEECCSC
T ss_pred             CcCcCCEEECCCCCCC-chhhhhc-CCCCEEECCCC
Confidence              68888888888888 6666432 34444444433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.25  E-value=1.8e-11  Score=95.94  Aligned_cols=82  Identities=28%  Similarity=0.317  Sum_probs=54.0

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.+++ +| .+..+++|+.|++++|.+++.  +.+..+++|++|++++|.+++.  ..+..+++|+.|+++
T Consensus        91 ~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~  164 (291)
T 1h6t_A           91 NLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE  164 (291)
T ss_dssp             TCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred             CCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEcc
Confidence            36777777777764 33 367777777777777777642  3466677777777777777643  456666777777777


Q ss_pred             cCcCccCC
Q 035751           81 YNRLWGRI   88 (195)
Q Consensus        81 ~N~l~g~~   88 (195)
                      +|.+++..
T Consensus       165 ~N~l~~~~  172 (291)
T 1h6t_A          165 DNQISDIV  172 (291)
T ss_dssp             SSCCCCCG
T ss_pred             CCccccch
Confidence            77766443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.24  E-value=1.6e-11  Score=93.30  Aligned_cols=84  Identities=18%  Similarity=0.197  Sum_probs=66.3

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCc---EEEccCC-CCCCCCccccCCCCCCc-EEeCCCCcCCCCCchhhhcCCCcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLK---VLNLSHN-SLTGNIPVSFDNMTALE-SLDLSFNKLEGRIPKQLLSVTTLA   75 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~~~~l~~L~   75 (195)
                      +|++|++++|.+++ +|. +..+++|+   .|++++| .+++..+..|..+++|+ +|++++|.++ .+|......++|+
T Consensus       106 ~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~  182 (239)
T 2xwt_C          106 LLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLD  182 (239)
T ss_dssp             TCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEE
T ss_pred             CCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCC
Confidence            47889999999885 665 78888888   9999999 88866666788889999 9999999888 5555444447889


Q ss_pred             EEEcccCc-CccC
Q 035751           76 LLNLSYNR-LWGR   87 (195)
Q Consensus        76 ~L~l~~N~-l~g~   87 (195)
                      .|++++|+ +++.
T Consensus       183 ~L~L~~n~~l~~i  195 (239)
T 2xwt_C          183 AVYLNKNKYLTVI  195 (239)
T ss_dssp             EEECTTCTTCCEE
T ss_pred             EEEcCCCCCcccC
Confidence            99999995 8743

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.24  E-value=5.1e-11  Score=93.42  Aligned_cols=80  Identities=28%  Similarity=0.390  Sum_probs=57.5

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.+++..+  +..+++|+.|++++|.+++ +| .+..+++|++|++++|.+++ + ..+..+++|+.|+++
T Consensus        69 ~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~  142 (291)
T 1h6t_A           69 NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLG  142 (291)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECC
T ss_pred             CCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEcc
Confidence            46777777777775443  7777777777777777773 33 37777888888888887774 3 456777888888888


Q ss_pred             cCcCcc
Q 035751           81 YNRLWG   86 (195)
Q Consensus        81 ~N~l~g   86 (195)
                      +|.+++
T Consensus       143 ~n~l~~  148 (291)
T 1h6t_A          143 NNKITD  148 (291)
T ss_dssp             SSCCCC
T ss_pred             CCcCCc
Confidence            888774

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.23  E-value=5.5e-11  Score=91.95  Aligned_cols=77  Identities=25%  Similarity=0.376  Sum_probs=35.6

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |++|+|++|.+++..+  +..+++|+.|+|++|.+++ +|.. .. ++|++|++++|.+++ ++ .+..+++|+.|++++
T Consensus        65 L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~  137 (263)
T 1xeu_A           65 LKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRN  137 (263)
T ss_dssp             CCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTT
T ss_pred             CCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCC
Confidence            4555555555553322  5555555555555555553 2211 11 334444444444432 11 244445555555555


Q ss_pred             CcCc
Q 035751           82 NRLW   85 (195)
Q Consensus        82 N~l~   85 (195)
                      |.++
T Consensus       138 N~i~  141 (263)
T 1xeu_A          138 NKLK  141 (263)
T ss_dssp             SCCC
T ss_pred             CcCC
Confidence            5554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.22  E-value=8.4e-12  Score=98.88  Aligned_cols=82  Identities=22%  Similarity=0.217  Sum_probs=51.3

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhh-cCCCccEEEcc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLL-SVTTLALLNLS   80 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~l~~L~~L~l~   80 (195)
                      |++|++++|.+++..+.   .+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|+.|+++
T Consensus       101 L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  177 (317)
T 3o53_A          101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ  177 (317)
T ss_dssp             CCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred             cCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence            55666666666644332   345667777777777655555666667777777777776655555443 56667777777


Q ss_pred             cCcCcc
Q 035751           81 YNRLWG   86 (195)
Q Consensus        81 ~N~l~g   86 (195)
                      +|.+++
T Consensus       178 ~N~l~~  183 (317)
T 3o53_A          178 YNFIYD  183 (317)
T ss_dssp             TSCCCE
T ss_pred             CCcCcc
Confidence            776663

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.21  E-value=4.3e-11  Score=94.55  Aligned_cols=79  Identities=23%  Similarity=0.371  Sum_probs=44.9

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.+++. +. +..+++|+.|++++|.+++..+  +..+++|++|++++|.+++ ++. +..+++|+.|+++
T Consensus       108 ~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~  181 (308)
T 1h6u_A          108 SIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKAD  181 (308)
T ss_dssp             TCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECC
T ss_pred             CCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECC
Confidence            356666666666642 32 5666666666666666653322  5556666666666666653 222 5555555566655


Q ss_pred             cCcCc
Q 035751           81 YNRLW   85 (195)
Q Consensus        81 ~N~l~   85 (195)
                      +|.++
T Consensus       182 ~n~l~  186 (308)
T 1h6u_A          182 DNKIS  186 (308)
T ss_dssp             SSCCC
T ss_pred             CCccC
Confidence            55555

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.20  E-value=6e-11  Score=91.72  Aligned_cols=96  Identities=24%  Similarity=0.263  Sum_probs=74.7

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.|++++|.++ .+| .+..+++|+.|+|++|.+++..+  +..+++|++|++++|.+++ +|.. .. ++|+.|+++
T Consensus        42 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~  114 (263)
T 1xeu_A           42 GVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLD  114 (263)
T ss_dssp             TCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECC
T ss_pred             cCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEcc
Confidence            4789999999998 455 68899999999999999995544  8999999999999999985 4543 33 899999999


Q ss_pred             cCcCccCCCCCCccCCCCcccccC
Q 035751           81 YNRLWGRIPRGNQFNTFENDSYIG  104 (195)
Q Consensus        81 ~N~l~g~~p~~~~~~~~~~~~~~~  104 (195)
                      +|.+++ ++....+..+..+.+.+
T Consensus       115 ~N~l~~-~~~l~~l~~L~~L~Ls~  137 (263)
T 1xeu_A          115 NNELRD-TDSLIHLKNLEILSIRN  137 (263)
T ss_dssp             SSCCSB-SGGGTTCTTCCEEECTT
T ss_pred             CCccCC-ChhhcCcccccEEECCC
Confidence            999985 44333334444444333

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.20  E-value=6.2e-11  Score=93.60  Aligned_cols=80  Identities=20%  Similarity=0.378  Sum_probs=57.4

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.+++ ++ .+..+++|+.|++++|.+++ ++. +..+++|++|++++|.+++. +. +..+++|+.|+++
T Consensus        86 ~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~  159 (308)
T 1h6u_A           86 KITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIG  159 (308)
T ss_dssp             SCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECC
T ss_pred             CCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEcc
Confidence            46777888887774 33 57777788888888887774 333 77778888888888877743 33 6777778888888


Q ss_pred             cCcCcc
Q 035751           81 YNRLWG   86 (195)
Q Consensus        81 ~N~l~g   86 (195)
                      +|.+++
T Consensus       160 ~n~l~~  165 (308)
T 1h6u_A          160 NAQVSD  165 (308)
T ss_dssp             SSCCCC
T ss_pred             CCcCCC
Confidence            887774

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.20  E-value=5.6e-11  Score=102.13  Aligned_cols=96  Identities=23%  Similarity=0.317  Sum_probs=48.4

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |+.|+|++|.+.+ + +.+..|++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|+|++
T Consensus       111 L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~  184 (605)
T 1m9s_A          111 LKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK  184 (605)
T ss_dssp             CCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcC
Confidence            4455555555553 2 2345555555555555555532  345555566666666666554333  55566666666666


Q ss_pred             CcCccCCCCCCccCCCCcccccC
Q 035751           82 NRLWGRIPRGNQFNTFENDSYIG  104 (195)
Q Consensus        82 N~l~g~~p~~~~~~~~~~~~~~~  104 (195)
                      |.+++ +|....+..+..+.+.+
T Consensus       185 N~i~~-l~~l~~l~~L~~L~L~~  206 (605)
T 1m9s_A          185 NHISD-LRALAGLKNLDVLELFS  206 (605)
T ss_dssp             SCCCB-CGGGTTCTTCSEEECCS
T ss_pred             CCCCC-ChHHccCCCCCEEEccC
Confidence            66653 23333333344444333

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.15  E-value=1.6e-10  Score=99.26  Aligned_cols=96  Identities=27%  Similarity=0.316  Sum_probs=51.4

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |+.|+|++|.+.+ +| .+..+++|+.|+|++|.+++ + +.+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++
T Consensus        89 L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~  162 (605)
T 1m9s_A           89 LGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED  162 (605)
T ss_dssp             CCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCS
T ss_pred             CCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcC
Confidence            4455555555542 22 35555555555555555553 2 2355566666666666666533  4566667777777777


Q ss_pred             CcCccCCCCCCccCCCCcccccC
Q 035751           82 NRLWGRIPRGNQFNTFENDSYIG  104 (195)
Q Consensus        82 N~l~g~~p~~~~~~~~~~~~~~~  104 (195)
                      |.+++..| ...+..+..+.+.+
T Consensus       163 N~l~~~~~-l~~l~~L~~L~Ls~  184 (605)
T 1m9s_A          163 NQISDIVP-LAGLTKLQNLYLSK  184 (605)
T ss_dssp             SCCCCCGG-GTTCTTCCEEECCS
T ss_pred             CcCCCchh-hccCCCCCEEECcC
Confidence            77765544 33333444443333

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.15  E-value=1.4e-10  Score=96.50  Aligned_cols=78  Identities=28%  Similarity=0.404  Sum_probs=38.6

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |+.|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..|  +..+++|+.|++++
T Consensus       267 L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~  340 (466)
T 1o6v_A          267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN  340 (466)
T ss_dssp             CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCS
T ss_pred             CCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCC
Confidence            5556666665554322  4555555555555555553322  4455555555555555543322  34444444444444


Q ss_pred             CcCc
Q 035751           82 NRLW   85 (195)
Q Consensus        82 N~l~   85 (195)
                      |.++
T Consensus       341 n~l~  344 (466)
T 1o6v_A          341 NKVS  344 (466)
T ss_dssp             SCCC
T ss_pred             CccC
Confidence            4444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.12  E-value=2.7e-10  Score=94.65  Aligned_cols=83  Identities=29%  Similarity=0.462  Sum_probs=59.6

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.|++++|.+++..|  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.|+++
T Consensus       244 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~  317 (466)
T 1o6v_A          244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY  317 (466)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECC
T ss_pred             CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECc
Confidence            36677777777775444  6777777777777777774433  6777888888888888875433  6778888888888


Q ss_pred             cCcCccCCC
Q 035751           81 YNRLWGRIP   89 (195)
Q Consensus        81 ~N~l~g~~p   89 (195)
                      +|.+++..|
T Consensus       318 ~n~l~~~~~  326 (466)
T 1o6v_A          318 FNNISDISP  326 (466)
T ss_dssp             SSCCSCCGG
T ss_pred             CCcCCCchh
Confidence            888876554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.12  E-value=7.7e-11  Score=94.02  Aligned_cols=100  Identities=20%  Similarity=0.291  Sum_probs=83.2

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.+++.  +.+..+++|+.|++++|.+++.  +.+..+++|+.|++++|.+++..|..+..+++|+.|+++
T Consensus       244 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  319 (347)
T 4fmz_A          244 QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS  319 (347)
T ss_dssp             TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred             CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence            588999999999954  4689999999999999999954  458899999999999999998888899999999999999


Q ss_pred             cCcCccCCCCCCccCCCCcccccCC
Q 035751           81 YNRLWGRIPRGNQFNTFENDSYIGN  105 (195)
Q Consensus        81 ~N~l~g~~p~~~~~~~~~~~~~~~n  105 (195)
                      +|++++..| ...+..+..+.+.+|
T Consensus       320 ~n~l~~~~~-~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          320 QNHITDIRP-LASLSKMDSADFANQ  343 (347)
T ss_dssp             SSSCCCCGG-GGGCTTCSEESSSCC
T ss_pred             CCccccccC-hhhhhccceeehhhh
Confidence            999997655 334444544444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.11  E-value=9.8e-11  Score=93.99  Aligned_cols=88  Identities=16%  Similarity=0.098  Sum_probs=74.2

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCc-cccCCCCCCcE-EeCCCCcCCCCCchhhhcCCCccEEE
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIP-VSFDNMTALES-LDLSFNKLEGRIPKQLLSVTTLALLN   78 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~l~~N~l~~~~p~~~~~l~~L~~L~   78 (195)
                      ++++|+|++|.|+...+..|.++++|++|+|++|.+.+.+| ..|.++++|.. +.++.|+++...|..|..+++|++|+
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence            57899999999996555679999999999999999876555 46888988765 66778999977788899999999999


Q ss_pred             cccCcCccCC
Q 035751           79 LSYNRLWGRI   88 (195)
Q Consensus        79 l~~N~l~g~~   88 (195)
                      +++|.+++..
T Consensus       111 l~~n~l~~~~  120 (350)
T 4ay9_X          111 ISNTGIKHLP  120 (350)
T ss_dssp             EEEECCSSCC
T ss_pred             ccccccccCC
Confidence            9999998443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.07  E-value=7.5e-10  Score=92.10  Aligned_cols=78  Identities=22%  Similarity=0.212  Sum_probs=49.1

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.+++. | .+..+++|++|+|++|.+++. |  ++.+++|++|++++|.+++. +  +..+++|++|+++
T Consensus        43 ~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~  114 (457)
T 3bz5_A           43 TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCD  114 (457)
T ss_dssp             TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECC
Confidence            356677777777643 4 466667777777777776643 3  56666666666666666643 2  5566666666666


Q ss_pred             cCcCcc
Q 035751           81 YNRLWG   86 (195)
Q Consensus        81 ~N~l~g   86 (195)
                      +|.+++
T Consensus       115 ~N~l~~  120 (457)
T 3bz5_A          115 TNKLTK  120 (457)
T ss_dssp             SSCCSC
T ss_pred             CCcCCe
Confidence            666654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.06  E-value=8.9e-13  Score=97.68  Aligned_cols=79  Identities=33%  Similarity=0.407  Sum_probs=43.6

Q ss_pred             EEEecCCcCCCCcch------hhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEE
Q 035751            4 ATDLSSNRFCGEIPK------VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALL   77 (195)
Q Consensus         4 ~L~Ls~N~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L   77 (195)
                      .++++.+.+++..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|+.|
T Consensus        22 ~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L   98 (198)
T 1ds9_A           22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEEL   98 (198)
T ss_dssp             CTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEE
T ss_pred             CcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEE
Confidence            334444444444443      55556666666666666553 44 5555566666666666655 445555555555666


Q ss_pred             EcccCcCc
Q 035751           78 NLSYNRLW   85 (195)
Q Consensus        78 ~l~~N~l~   85 (195)
                      ++++|.++
T Consensus        99 ~L~~N~l~  106 (198)
T 1ds9_A           99 WISYNQIA  106 (198)
T ss_dssp             EEEEEECC
T ss_pred             ECcCCcCC
Confidence            66665555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.06  E-value=8.3e-10  Score=94.23  Aligned_cols=72  Identities=25%  Similarity=0.389  Sum_probs=30.4

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |++|+|++|.|+ .+|   ..+++|+.|+|++|.|++ +|. +..  +|++|++++|.|++ +|.   .+++|+.|++++
T Consensus        82 L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~  149 (571)
T 3cvr_A           82 ITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADN  149 (571)
T ss_dssp             CSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred             CCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCC
Confidence            344444444444 333   233444444444444443 333 322  44444444444442 332   234444444444


Q ss_pred             CcCc
Q 035751           82 NRLW   85 (195)
Q Consensus        82 N~l~   85 (195)
                      |.++
T Consensus       150 N~l~  153 (571)
T 3cvr_A          150 NQLT  153 (571)
T ss_dssp             SCCS
T ss_pred             CccC
Confidence            4444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.05  E-value=2.3e-10  Score=97.69  Aligned_cols=79  Identities=25%  Similarity=0.359  Sum_probs=37.1

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCC-------cEEeCCCCcCCCCCchhhhcCCCc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTAL-------ESLDLSFNKLEGRIPKQLLSVTTL   74 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~l~~N~l~~~~p~~~~~l~~L   74 (195)
                      |+.|+|++|.|++ +|. |.  ++|+.|+|++|.|+ .+|. |..  +|       +.|++++|.|+ .+|..+..+++|
T Consensus       162 L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L  232 (571)
T 3cvr_A          162 LEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPT  232 (571)
T ss_dssp             CCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTT
T ss_pred             cCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCC
Confidence            3444444444443 333 32  44555555555554 3333 332  44       55555555555 345555555555


Q ss_pred             cEEEcccCcCccCCC
Q 035751           75 ALLNLSYNRLWGRIP   89 (195)
Q Consensus        75 ~~L~l~~N~l~g~~p   89 (195)
                      +.|++++|++++.+|
T Consensus       233 ~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          233 CTIILEDNPLSSRIR  247 (571)
T ss_dssp             EEEECCSSSCCHHHH
T ss_pred             CEEEeeCCcCCCcCH
Confidence            555555555554444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.01  E-value=2.8e-09  Score=88.66  Aligned_cols=77  Identities=25%  Similarity=0.182  Sum_probs=61.3

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.+++. |  ++.+++|++|++++|.+++. |  ++.+++|++|++++|.+++ +|  +..+++|+.|+++
T Consensus        65 ~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~  135 (457)
T 3bz5_A           65 GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCA  135 (457)
T ss_dssp             TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECT
T ss_pred             CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECC
Confidence            478888888888864 4  77888888888888888854 3  7888888888888888885 44  7778888888888


Q ss_pred             cCcCcc
Q 035751           81 YNRLWG   86 (195)
Q Consensus        81 ~N~l~g   86 (195)
                      +|.+++
T Consensus       136 ~N~l~~  141 (457)
T 3bz5_A          136 RNTLTE  141 (457)
T ss_dssp             TSCCSC
T ss_pred             CCccce
Confidence            888875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.99  E-value=8.4e-10  Score=95.11  Aligned_cols=79  Identities=32%  Similarity=0.393  Sum_probs=40.4

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |+.|+|++|.|++ +|   ..+++|+.|+|++|.|+ .+|.   .+++|+.|++++|.|+ .+|..+..+++|+.|++++
T Consensus       223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG  293 (622)
T ss_dssp             CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred             CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence            4444455554442 33   23345555555555555 3333   3455555555555555 4455555555555666655


Q ss_pred             CcCccCCC
Q 035751           82 NRLWGRIP   89 (195)
Q Consensus        82 N~l~g~~p   89 (195)
                      |++++.+|
T Consensus       294 N~l~~~~~  301 (622)
T 3g06_A          294 NPLSERTL  301 (622)
T ss_dssp             CCCCHHHH
T ss_pred             CCCCCcCH
Confidence            55554443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.97  E-value=1.8e-12  Score=95.99  Aligned_cols=81  Identities=23%  Similarity=0.347  Sum_probs=73.1

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|+.|+++
T Consensus        49 ~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~  123 (198)
T 1ds9_A           49 ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMS  123 (198)
T ss_dssp             TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEES
T ss_pred             CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECC
Confidence            48899999999996 67 8899999999999999999 778888888999999999999995 55 68889999999999


Q ss_pred             cCcCcc
Q 035751           81 YNRLWG   86 (195)
Q Consensus        81 ~N~l~g   86 (195)
                      +|.+++
T Consensus       124 ~N~i~~  129 (198)
T 1ds9_A          124 NNKITN  129 (198)
T ss_dssp             EEECCC
T ss_pred             CCcCCc
Confidence            999984

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.97  E-value=1.4e-10  Score=93.36  Aligned_cols=87  Identities=28%  Similarity=0.305  Sum_probs=59.2

Q ss_pred             CccEEEecCCcCCCCcc----hhhcCCC-CCcEEEccCCCCCCCCccccCCC-----CCCcEEeCCCCcCCCCCchhhhc
Q 035751            1 MFRATDLSSNRFCGEIP----KVLGNFK-SLKVLNLSHNSLTGNIPVSFDNM-----TALESLDLSFNKLEGRIPKQLLS   70 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~l~~N~l~~~~p~~~~~   70 (195)
                      +|++|||++|.+++..+    ..+..++ +|++|+|++|.+++..+..+..+     ++|++|++++|.+++..+..+..
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            36777777777776555    5666777 77777777777776666665554     77777777777777655554333


Q ss_pred             ----C-CCccEEEcccCcCccC
Q 035751           71 ----V-TTLALLNLSYNRLWGR   87 (195)
Q Consensus        71 ----l-~~L~~L~l~~N~l~g~   87 (195)
                          + ++|+.|++++|.+++.
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~  124 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSK  124 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGS
T ss_pred             HHHhCCCCccEEECcCCcCCcH
Confidence                3 6777777777777643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.97  E-value=1.1e-10  Score=94.75  Aligned_cols=86  Identities=22%  Similarity=0.305  Sum_probs=58.2

Q ss_pred             CccEEEecCCcCCC-----CcchhhcCCCCCcEEEccCCCCC----CCCccccCCCCCCcEEeCCCCcCCCC----Cchh
Q 035751            1 MFRATDLSSNRFCG-----EIPKVLGNFKSLKVLNLSHNSLT----GNIPVSFDNMTALESLDLSFNKLEGR----IPKQ   67 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~l~~N~l~~~----~p~~   67 (195)
                      +|++|+|++|.++.     ..|..+..+++|+.|+|++|.++    ..+|..+..+++|++|++++|.+++.    ++..
T Consensus       188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  267 (386)
T 2ca6_A          188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA  267 (386)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred             CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence            46777777777762     23336667777777777777774    45666677777777777777777654    3445


Q ss_pred             hhc--CCCccEEEcccCcCcc
Q 035751           68 LLS--VTTLALLNLSYNRLWG   86 (195)
Q Consensus        68 ~~~--l~~L~~L~l~~N~l~g   86 (195)
                      +..  +++|+.|++++|.+++
T Consensus       268 l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          268 FSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HHTCSSCCCCEEECCSSCCBH
T ss_pred             HhhccCCCeEEEECcCCcCCH
Confidence            533  6777777777777765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.96  E-value=7.3e-10  Score=92.08  Aligned_cols=60  Identities=38%  Similarity=0.536  Sum_probs=44.4

Q ss_pred             CCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcCcc--CCCCC
Q 035751           24 KSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWG--RIPRG   91 (195)
Q Consensus        24 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g--~~p~~   91 (195)
                      ++|+.|++++|.+++ +|..   +++|++|++++|.++ .+|.   .+++|+.|++++|.+++  .+|..
T Consensus       317 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~  378 (454)
T 1jl5_A          317 PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPES  378 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred             CcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHH
Confidence            478888888888874 5543   477888888888887 4665   46788888888888887  55543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.96  E-value=3.8e-09  Score=87.79  Aligned_cols=78  Identities=27%  Similarity=0.371  Sum_probs=51.3

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.+++ +| .++.+++|++|++++|.+++ +|..+   ++|++|++++|.+++ +| .+..+++|+.|+++
T Consensus       132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD  203 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred             CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence            36677777777774 55 47777777777777777774 44432   466677777776664 44 46666677777777


Q ss_pred             cCcCcc
Q 035751           81 YNRLWG   86 (195)
Q Consensus        81 ~N~l~g   86 (195)
                      +|.+++
T Consensus       204 ~N~l~~  209 (454)
T 1jl5_A          204 NNSLKK  209 (454)
T ss_dssp             SSCCSS
T ss_pred             CCcCCc
Confidence            666664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.96  E-value=1.8e-10  Score=91.43  Aligned_cols=84  Identities=24%  Similarity=0.223  Sum_probs=47.4

Q ss_pred             ccEEEecCCcCCCC-cchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCC-cCCCC-CchhhhcCCCccEEE
Q 035751            2 FRATDLSSNRFCGE-IPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFN-KLEGR-IPKQLLSVTTLALLN   78 (195)
Q Consensus         2 L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N-~l~~~-~p~~~~~l~~L~~L~   78 (195)
                      |++|++++|.+++. +|..+..+++|+.|+|++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|+.|+
T Consensus        95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~  174 (336)
T 2ast_B           95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN  174 (336)
T ss_dssp             CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc
Confidence            45566666655543 5555556666666666666655555555555666666666665 44432 344455555666666


Q ss_pred             cccC-cCc
Q 035751           79 LSYN-RLW   85 (195)
Q Consensus        79 l~~N-~l~   85 (195)
                      +++| .++
T Consensus       175 l~~~~~l~  182 (336)
T 2ast_B          175 LSWCFDFT  182 (336)
T ss_dssp             CCCCTTCC
T ss_pred             CCCCCCcC
Confidence            6655 554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.94  E-value=8.4e-11  Score=95.39  Aligned_cols=86  Identities=22%  Similarity=0.257  Sum_probs=52.2

Q ss_pred             CccEEEecCCcCC-CCcc---hhhcCCCCCcEEEccCCCCC--C---CCccccCCCCCCcEEeCCCCcCC----CCCchh
Q 035751            1 MFRATDLSSNRFC-GEIP---KVLGNFKSLKVLNLSHNSLT--G---NIPVSFDNMTALESLDLSFNKLE----GRIPKQ   67 (195)
Q Consensus         1 ~L~~L~Ls~N~l~-~~~p---~~~~~l~~L~~L~Ls~N~l~--~---~~p~~~~~l~~L~~L~l~~N~l~----~~~p~~   67 (195)
                      +|++|+|++|.++ +.+|   ..+..+++|+.|+|++|.++  |   ..|..+..+++|++|++++|.++    +.+|..
T Consensus       160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~  239 (386)
T 2ca6_A          160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  239 (386)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence            3566666666665 3333   34556666666777666665  1   23335566666667777666664    345566


Q ss_pred             hhcCCCccEEEcccCcCcc
Q 035751           68 LLSVTTLALLNLSYNRLWG   86 (195)
Q Consensus        68 ~~~l~~L~~L~l~~N~l~g   86 (195)
                      +..+++|+.|++++|.+++
T Consensus       240 l~~~~~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          240 LKSWPNLRELGLNDCLLSA  258 (386)
T ss_dssp             GGGCTTCCEEECTTCCCCH
T ss_pred             HccCCCcCEEECCCCCCch
Confidence            6666666667776666653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.86  E-value=8.7e-10  Score=88.78  Aligned_cols=86  Identities=24%  Similarity=0.210  Sum_probs=75.7

Q ss_pred             EEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCc----cccCCCC-CCcEEeCCCCcCCCCCchhhhcC-----CC
Q 035751            4 ATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIP----VSFDNMT-ALESLDLSFNKLEGRIPKQLLSV-----TT   73 (195)
Q Consensus         4 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~l~~N~l~~~~p~~~~~l-----~~   73 (195)
                      .++++.|.+++.+|..+....+|+.|||++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46899999999999888888889999999999997766    7788898 89999999999998778777775     99


Q ss_pred             ccEEEcccCcCccCCC
Q 035751           74 LALLNLSYNRLWGRIP   89 (195)
Q Consensus        74 L~~L~l~~N~l~g~~p   89 (195)
                      |+.|++++|.+++..+
T Consensus        82 L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             CCEEECCSSCGGGSCH
T ss_pred             ccEEECcCCcCChHHH
Confidence            9999999999986544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.85  E-value=3e-09  Score=82.40  Aligned_cols=68  Identities=29%  Similarity=0.322  Sum_probs=54.6

Q ss_pred             cCCCCCcEEEccCCCCCC--CCccccCCCCCCcEEeCCCCcCCCCCchhhhcCC--CccEEEcccCcCccCCCC
Q 035751           21 GNFKSLKVLNLSHNSLTG--NIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVT--TLALLNLSYNRLWGRIPR   90 (195)
Q Consensus        21 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~--~L~~L~l~~N~l~g~~p~   90 (195)
                      .++++|+.|+|++|.|++  .+|..+..+++|+.|+|++|.|++.  ..+..+.  +|+.|+|++|++++.+|.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence            468899999999999987  3456677899999999999999864  3344444  899999999999887764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.84  E-value=1.1e-09  Score=86.92  Aligned_cols=85  Identities=16%  Similarity=0.073  Sum_probs=74.0

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCC-CccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGN-IPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l   79 (195)
                      +++.|++++|.+.+..+. +..+++|+.|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus        71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            367899999999876665 56799999999999998865 7888899999999999999998888888999999999999


Q ss_pred             ccC-cCcc
Q 035751           80 SYN-RLWG   86 (195)
Q Consensus        80 ~~N-~l~g   86 (195)
                      ++| .+++
T Consensus       150 ~~~~~l~~  157 (336)
T 2ast_B          150 SGCSGFSE  157 (336)
T ss_dssp             TTCBSCCH
T ss_pred             CCCCCCCH
Confidence            999 6764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.79  E-value=2e-08  Score=86.54  Aligned_cols=72  Identities=26%  Similarity=0.298  Sum_probs=40.4

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |++|+|++|.|+ .+|.   .+++|++|+|++|.++ .+|.   .+++|++|++++|.+++ +|.   .+++|+.|++++
T Consensus        63 L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~  130 (622)
T 3g06_A           63 ITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFG  130 (622)
T ss_dssp             CSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCS
T ss_pred             CcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCC
Confidence            455566666555 3333   3456666666666665 3443   44566666666666653 333   345566666666


Q ss_pred             CcCc
Q 035751           82 NRLW   85 (195)
Q Consensus        82 N~l~   85 (195)
                      |.++
T Consensus       131 N~l~  134 (622)
T 3g06_A          131 NQLT  134 (622)
T ss_dssp             SCCS
T ss_pred             CCCC
Confidence            6665

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.75  E-value=1.4e-09  Score=89.72  Aligned_cols=86  Identities=21%  Similarity=0.176  Sum_probs=53.1

Q ss_pred             CccEEEecCCcCCCCcchhhcC-----CCCCcEEEccCCCCCCC----CccccCCCCCCcEEeCCCCcCCCCCchhhhc-
Q 035751            1 MFRATDLSSNRFCGEIPKVLGN-----FKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGRIPKQLLS-   70 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~-   70 (195)
                      +|++|++++|.+.+..+..+..     .++|+.|++++|.+++.    ++..+..+++|++|++++|.+++..+..+.. 
T Consensus       285 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~  364 (461)
T 1z7x_W          285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG  364 (461)
T ss_dssp             TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHH
T ss_pred             CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHH
Confidence            4677777777776443333332     25777777777777644    3455556677777777777776444443332 


Q ss_pred             ----CCCccEEEcccCcCcc
Q 035751           71 ----VTTLALLNLSYNRLWG   86 (195)
Q Consensus        71 ----l~~L~~L~l~~N~l~g   86 (195)
                          .++|+.|++++|.+++
T Consensus       365 l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          365 LGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             HTSTTCCCCEEECTTSCCCH
T ss_pred             HcCCCCceEEEECCCCCCCh
Confidence                5577777777777763

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.75  E-value=2.1e-09  Score=83.21  Aligned_cols=75  Identities=28%  Similarity=0.347  Sum_probs=43.8

Q ss_pred             ccEEEecCCcCCC--CcchhhcCCCCCcEEEccCCCCCCCCccccCCCC--CCcEEeCCCCcCCCCCch-------hhhc
Q 035751            2 FRATDLSSNRFCG--EIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMT--ALESLDLSFNKLEGRIPK-------QLLS   70 (195)
Q Consensus         2 L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~l~~N~l~~~~p~-------~~~~   70 (195)
                      |+.|+|++|.|++  .+|..+..+++|+.|+|++|.|++.  ..+..+.  +|++|+|++|.+.+.+|.       .+..
T Consensus       172 L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~  249 (267)
T 3rw6_A          172 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRER  249 (267)
T ss_dssp             CCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHH
T ss_pred             CCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHH
Confidence            5666777777665  3345555666777777777766643  2223333  666777777766654442       2455


Q ss_pred             CCCccEEE
Q 035751           71 VTTLALLN   78 (195)
Q Consensus        71 l~~L~~L~   78 (195)
                      +++|+.||
T Consensus       250 ~P~L~~LD  257 (267)
T 3rw6_A          250 FPKLLRLD  257 (267)
T ss_dssp             CTTCCEES
T ss_pred             CcccCeEC
Confidence            66666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.68  E-value=3.1e-08  Score=79.34  Aligned_cols=82  Identities=22%  Similarity=0.182  Sum_probs=41.9

Q ss_pred             cEEEecC-CcCCCCcchhhcCCC-CCcEEEccCCCCCCCCccccCCCCCCcEEeCCC-CcCCCCCchhhhcCCCccEEEc
Q 035751            3 RATDLSS-NRFCGEIPKVLGNFK-SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSF-NKLEGRIPKQLLSVTTLALLNL   79 (195)
Q Consensus         3 ~~L~Ls~-N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~l   79 (195)
                      ..|++.+ |.+....+..|..+. .++.|+|++|.|+ .+|.......+|+.|++++ |.++...++.|..+++|+.|++
T Consensus       131 ~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdL  209 (350)
T 4ay9_X          131 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI  209 (350)
T ss_dssp             EEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEEC
T ss_pred             hhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhc
Confidence            3455543 344433334444443 4556666666666 3333333445566666653 4444222234555666666666


Q ss_pred             ccCcCc
Q 035751           80 SYNRLW   85 (195)
Q Consensus        80 ~~N~l~   85 (195)
                      ++|.++
T Consensus       210 s~N~l~  215 (350)
T 4ay9_X          210 SRTRIH  215 (350)
T ss_dssp             TTSCCC
T ss_pred             CCCCcC
Confidence            666665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.66  E-value=5e-08  Score=77.40  Aligned_cols=87  Identities=16%  Similarity=0.121  Sum_probs=74.5

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCc-EEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALE-SLDLSFNKLEGRIPKQLLSVTTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~~~~l~~L~~L~l   79 (195)
                      +|+.|+|++|.++.+.+..|.++.+|+.++|++| ++...+..|.++.+|+ .+++.+ .++...+.+|..+++|+.+++
T Consensus       227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l  304 (329)
T 3sb4_A          227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA  304 (329)
T ss_dssp             TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred             CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence            4789999999999666678999999999999998 7767778899999999 999998 777566788999999999999


Q ss_pred             ccCcCccCCCC
Q 035751           80 SYNRLWGRIPR   90 (195)
Q Consensus        80 ~~N~l~g~~p~   90 (195)
                      +.|.++ .++.
T Consensus       305 ~~n~i~-~I~~  314 (329)
T 3sb4_A          305 TGDKIT-TLGD  314 (329)
T ss_dssp             CSSCCC-EECT
T ss_pred             CCCccC-ccch
Confidence            999887 4443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.63  E-value=6.6e-09  Score=84.23  Aligned_cols=86  Identities=27%  Similarity=0.240  Sum_probs=62.9

Q ss_pred             CccEEEecCCcCCCCcchhh-----cCCCCCcEEEccCCCCCCC----CccccCCCCCCcEEeCCCCcCCCC----Cchh
Q 035751            1 MFRATDLSSNRFCGEIPKVL-----GNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGR----IPKQ   67 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~   67 (195)
                      +|+.|+|++|.|+......+     ...++|++|+|++|.|+..    ++..+..+++|++|+|++|.|+..    ++..
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~  206 (372)
T 3un9_A          127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ  206 (372)
T ss_dssp             TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred             hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence            47889999998875444444     3467899999999988632    344456788899999999988643    2445


Q ss_pred             hhcCCCccEEEcccCcCcc
Q 035751           68 LLSVTTLALLNLSYNRLWG   86 (195)
Q Consensus        68 ~~~l~~L~~L~l~~N~l~g   86 (195)
                      +...++|+.|++++|.++.
T Consensus       207 L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          207 LDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             GGGCSCCCEEECCSSCCCH
T ss_pred             HhcCCCcCeEECCCCCCCH
Confidence            6677889999999998863

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.59  E-value=5.3e-09  Score=86.27  Aligned_cols=84  Identities=20%  Similarity=0.169  Sum_probs=39.7

Q ss_pred             ccEEEecCCcCCCCc-----chhhcCCCCCcEEEccCCCCCCC----CccccCCCCCCcEEeCCCCcCCCCCchhhhc--
Q 035751            2 FRATDLSSNRFCGEI-----PKVLGNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGRIPKQLLS--   70 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~--   70 (195)
                      |++|++++|.+++..     +..+..+++|+.|++++|.++..    ++..+..+++|++|++++|.++...+..+..  
T Consensus       229 L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l  308 (461)
T 1z7x_W          229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL  308 (461)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH
T ss_pred             ccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh
Confidence            555666666554321     11122355566666666655532    3444444555555555555554322222221  


Q ss_pred             ---CCCccEEEcccCcCc
Q 035751           71 ---VTTLALLNLSYNRLW   85 (195)
Q Consensus        71 ---l~~L~~L~l~~N~l~   85 (195)
                         .++|+.|++++|.++
T Consensus       309 ~~~~~~L~~L~L~~n~l~  326 (461)
T 1z7x_W          309 LEPGCQLESLWVKSCSFT  326 (461)
T ss_dssp             TSTTCCCCEEECTTSCCB
T ss_pred             ccCCccceeeEcCCCCCc
Confidence               134555555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.50  E-value=2.8e-08  Score=80.54  Aligned_cols=85  Identities=22%  Similarity=0.194  Sum_probs=55.7

Q ss_pred             CccEEEecCCcCCCCcchhh-cCCCCCcEEEccCCCCCCCCcccc-----CCCCCCcEEeCCCCcCCCC----Cchhhhc
Q 035751            1 MFRATDLSSNRFCGEIPKVL-GNFKSLKVLNLSHNSLTGNIPVSF-----DNMTALESLDLSFNKLEGR----IPKQLLS   70 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~l~~N~l~~~----~p~~~~~   70 (195)
                      +|++|+|++|.++......+ ..+.+|+.|+|++|.++......+     ...++|++|+|++|.|+..    ++..+..
T Consensus       102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~  181 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG  181 (372)
T ss_dssp             CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence            46778888888764333332 245678888888888764333333     3457788888888887532    3344466


Q ss_pred             CCCccEEEcccCcCc
Q 035751           71 VTTLALLNLSYNRLW   85 (195)
Q Consensus        71 l~~L~~L~l~~N~l~   85 (195)
                      .++|++|+|++|.++
T Consensus       182 ~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          182 NTSVTHLSLLHTGLG  196 (372)
T ss_dssp             CSSCCEEECTTSSCH
T ss_pred             CCCcCEEeCCCCCCC
Confidence            777888888888876

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.38  E-value=8.5e-08  Score=70.11  Aligned_cols=85  Identities=16%  Similarity=0.152  Sum_probs=65.9

Q ss_pred             CccEEEecCC-cCCCC----cchhhcCCCCCcEEEccCCCCCCC----CccccCCCCCCcEEeCCCCcCCCC----Cchh
Q 035751            1 MFRATDLSSN-RFCGE----IPKVLGNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGR----IPKQ   67 (195)
Q Consensus         1 ~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~   67 (195)
                      +|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.|+..    +...
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~  116 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA  116 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence            4789999999 88742    445567788999999999998732    334455668899999999999753    3455


Q ss_pred             hhcCCCccEEEc--ccCcCc
Q 035751           68 LLSVTTLALLNL--SYNRLW   85 (195)
Q Consensus        68 ~~~l~~L~~L~l--~~N~l~   85 (195)
                      +...+.|+.|++  ++|.++
T Consensus       117 L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             GGGCSSCCEEECCCCSSCCC
T ss_pred             HHhCCCceEEEecCCCCCCC
Confidence            677788999999  889886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.36  E-value=1.5e-07  Score=68.81  Aligned_cols=71  Identities=17%  Similarity=0.198  Sum_probs=54.2

Q ss_pred             cchhhcCCCCCcEEEccCC-CCCCC----CccccCCCCCCcEEeCCCCcCCCC----CchhhhcCCCccEEEcccCcCcc
Q 035751           16 IPKVLGNFKSLKVLNLSHN-SLTGN----IPVSFDNMTALESLDLSFNKLEGR----IPKQLLSVTTLALLNLSYNRLWG   86 (195)
Q Consensus        16 ~p~~~~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~g   86 (195)
                      +...+...+.|++|+|++| .+...    +...+...++|++|+|++|.|...    +...+...+.|++|+|++|.++.
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3445677899999999999 88632    344567778999999999998743    33445667889999999999873

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.32  E-value=1.1e-07  Score=80.73  Aligned_cols=63  Identities=13%  Similarity=0.057  Sum_probs=35.3

Q ss_pred             CCCCcEEEccCCCCCC-CCccccCCCCCCcEEeCCCCcCCCC-CchhhhcCCCccEEEcccCcCc
Q 035751           23 FKSLKVLNLSHNSLTG-NIPVSFDNMTALESLDLSFNKLEGR-IPKQLLSVTTLALLNLSYNRLW   85 (195)
Q Consensus        23 l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~   85 (195)
                      +++|+.|++++|.+++ .++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|+++
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            5556666666666553 2233345566666666666665433 2233345666666666666655

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.26  E-value=3e-07  Score=66.65  Aligned_cols=83  Identities=10%  Similarity=0.057  Sum_probs=56.3

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCC-CCCCCccccCCC----CCCcEEeCCCCc-CCCCCchhhhcCCCc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNS-LTGNIPVSFDNM----TALESLDLSFNK-LEGRIPKQLLSVTTL   74 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~l~~N~-l~~~~p~~~~~l~~L   74 (195)
                      .|++||++++.++..--..+..+++|+.|+|+++. ++..--..+..+    ++|++|+++++. ++..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            36788888888775555567788888888888874 653333334444    368888888764 664434456677888


Q ss_pred             cEEEcccCc
Q 035751           75 ALLNLSYNR   83 (195)
Q Consensus        75 ~~L~l~~N~   83 (195)
                      +.|++++++
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            888887754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.16  E-value=2.6e-06  Score=67.44  Aligned_cols=77  Identities=17%  Similarity=0.043  Sum_probs=68.1

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCc-EEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLK-VLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l   79 (195)
                      +|+.|+|++| +..+.+.+|.++.+|+ .+++.. .++...+..|.++++|+.+++++|.++...+..|.++++|+.++.
T Consensus       251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            5889999998 8767778899999999 999999 777577789999999999999999999777779999999998863

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.10  E-value=1.2e-06  Score=74.45  Aligned_cols=84  Identities=12%  Similarity=0.201  Sum_probs=41.5

Q ss_pred             ccEEEecCCc-CCC-CcchhhcCCCCCcEEEccCCCCCCC----CccccCCCCCCcEEeCCCCcCCCC----CchhhhcC
Q 035751            2 FRATDLSSNR-FCG-EIPKVLGNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGR----IPKQLLSV   71 (195)
Q Consensus         2 L~~L~Ls~N~-l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l   71 (195)
                      |++|+|++|. ++. .++.....+++|++|+|++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            5566666554 110 1112223556666666666655433    222334455666666666665422    22333455


Q ss_pred             CCccEEEcccCcCc
Q 035751           72 TTLALLNLSYNRLW   85 (195)
Q Consensus        72 ~~L~~L~l~~N~l~   85 (195)
                      ++|+.|++++|.+.
T Consensus       220 ~~L~~L~L~~~~~~  233 (592)
T 3ogk_B          220 RSLVSVKVGDFEIL  233 (592)
T ss_dssp             TTCCEEECSSCBGG
T ss_pred             CCCcEEeccCccHH
Confidence            66666666665554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.07  E-value=3.7e-07  Score=77.46  Aligned_cols=84  Identities=17%  Similarity=0.139  Sum_probs=47.3

Q ss_pred             CccEEEec--C----CcCCCC-----cchhhcCCCCCcEEEccCCCCCCCCccccCC-CCCCcEEeCCCCcCCCCCchhh
Q 035751            1 MFRATDLS--S----NRFCGE-----IPKVLGNFKSLKVLNLSHNSLTGNIPVSFDN-MTALESLDLSFNKLEGRIPKQL   68 (195)
Q Consensus         1 ~L~~L~Ls--~----N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~l~~N~l~~~~p~~~   68 (195)
                      +|+.|+++  +    |.++..     ++..+..+++|+.|++++ .++...+..+.. +++|++|++++|.+++..+..+
T Consensus       398 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l  476 (594)
T 2p1m_B          398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV  476 (594)
T ss_dssp             TCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH
T ss_pred             CcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH
Confidence            46677777  3    445421     122245566777777755 444333333433 6667777777776654433333


Q ss_pred             -hcCCCccEEEcccCcCc
Q 035751           69 -LSVTTLALLNLSYNRLW   85 (195)
Q Consensus        69 -~~l~~L~~L~l~~N~l~   85 (195)
                       ..+++|+.|++++|.++
T Consensus       477 ~~~~~~L~~L~L~~n~~~  494 (594)
T 2p1m_B          477 LSGCDSLRKLEIRDCPFG  494 (594)
T ss_dssp             HHHCTTCCEEEEESCSCC
T ss_pred             HhcCCCcCEEECcCCCCc
Confidence             45666777777777664

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.90  E-value=2.6e-06  Score=72.29  Aligned_cols=82  Identities=22%  Similarity=0.268  Sum_probs=39.0

Q ss_pred             ccEEEecCCcCCCCcchhhc-CCCCCcEEEccCC-CCCCC-CccccCCCCCCcEEeCCCCcCCCCCchhhh----cCCCc
Q 035751            2 FRATDLSSNRFCGEIPKVLG-NFKSLKVLNLSHN-SLTGN-IPVSFDNMTALESLDLSFNKLEGRIPKQLL----SVTTL   74 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~----~l~~L   74 (195)
                      |++|+|++|.+++..+..+. .+++|+.|+|++| .++.. ++..+..+++|++|++++|.+++..+..+.    .+++|
T Consensus       107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L  186 (594)
T 2p1m_B          107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL  186 (594)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCC
T ss_pred             CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcC
Confidence            55566666665554444443 4555555555555 23211 222233455555555555554433332222    33455


Q ss_pred             cEEEcccCc
Q 035751           75 ALLNLSYNR   83 (195)
Q Consensus        75 ~~L~l~~N~   83 (195)
                      +.|++++|.
T Consensus       187 ~~L~l~~~~  195 (594)
T 2p1m_B          187 VSLNISCLA  195 (594)
T ss_dssp             CEEECTTCC
T ss_pred             cEEEecccC
Confidence            555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.81  E-value=6.8e-05  Score=51.47  Aligned_cols=56  Identities=23%  Similarity=0.294  Sum_probs=34.3

Q ss_pred             EEEccCCCCC-CCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcCc
Q 035751           28 VLNLSHNSLT-GNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLW   85 (195)
Q Consensus        28 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~   85 (195)
                      .++.+++.++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666665 23443322  35677777777776544555666777777777777665

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.80  E-value=4.5e-05  Score=52.41  Aligned_cols=57  Identities=23%  Similarity=0.272  Sum_probs=47.2

Q ss_pred             cEEEecCCcCC-CCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCC
Q 035751            3 RATDLSSNRFC-GEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE   61 (195)
Q Consensus         3 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~   61 (195)
                      ..++.+++.++ ..+|..+.  .+|+.|+|++|.|+...+..|..+++|++|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36788899887 35665433  57999999999999777778899999999999999886

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.60  E-value=0.00014  Score=59.28  Aligned_cols=82  Identities=10%  Similarity=0.063  Sum_probs=66.1

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCC-----CCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLT-----GNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLA   75 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~   75 (195)
                      +|+.++|. +.++.+-+.+|.++.+|+.+++.+|.+.     ...+..|..+++|+.+++. +.++......|..+.+|+
T Consensus       249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCC
T ss_pred             CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCcc
Confidence            47788884 5566566788999999999999998765     3556789999999999999 457756677888999999


Q ss_pred             EEEcccCcCc
Q 035751           76 LLNLSYNRLW   85 (195)
Q Consensus        76 ~L~l~~N~l~   85 (195)
                      .+++..| ++
T Consensus       327 ~l~lp~~-l~  335 (401)
T 4fdw_A          327 QLTIPAN-VT  335 (401)
T ss_dssp             EEEECTT-CC
T ss_pred             EEEECcc-cc
Confidence            9999665 54

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.57  E-value=0.0002  Score=58.43  Aligned_cols=85  Identities=12%  Similarity=0.131  Sum_probs=64.2

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCC-----CCCchhhhcCCCcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE-----GRIPKQLLSVTTLA   75 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~-----~~~p~~~~~l~~L~   75 (195)
                      +|+.+++..| ++.+-..+|.+ .+|+.+++. +.++......|..+++|+.+++.+|.+.     ...+..|..+++|+
T Consensus       227 ~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~  303 (401)
T 4fdw_A          227 QLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLA  303 (401)
T ss_dssp             TCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCC
T ss_pred             CCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCC
Confidence            4778888875 56455567777 889999994 4566566788999999999999988765     34567888999999


Q ss_pred             EEEcccCcCccCCCC
Q 035751           76 LLNLSYNRLWGRIPR   90 (195)
Q Consensus        76 ~L~l~~N~l~g~~p~   90 (195)
                      .+++.. .++ .++.
T Consensus       304 ~l~l~~-~i~-~I~~  316 (401)
T 4fdw_A          304 RFEIPE-SIR-ILGQ  316 (401)
T ss_dssp             EECCCT-TCC-EECT
T ss_pred             eEEeCC-ceE-EEhh
Confidence            999984 455 4443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.43  E-value=6.3e-05  Score=60.61  Aligned_cols=9  Identities=0%  Similarity=0.187  Sum_probs=4.9

Q ss_pred             ccEEEecCC
Q 035751            2 FRATDLSSN   10 (195)
Q Consensus         2 L~~L~Ls~N   10 (195)
                      |+.|+|++|
T Consensus       174 L~~L~L~g~  182 (362)
T 2ra8_A          174 LNNLKIKGT  182 (362)
T ss_dssp             CCEEEEECC
T ss_pred             CcEEEEeCC
Confidence            455555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.34  E-value=2.1e-05  Score=63.44  Aligned_cols=85  Identities=20%  Similarity=0.299  Sum_probs=59.1

Q ss_pred             CccEEEecC--CcCCCC-----cchhh--cCCCCCcEEEccCCCCCCCCcccc---CCCCCCcEEeCCCCcCCCC----C
Q 035751            1 MFRATDLSS--NRFCGE-----IPKVL--GNFKSLKVLNLSHNSLTGNIPVSF---DNMTALESLDLSFNKLEGR----I   64 (195)
Q Consensus         1 ~L~~L~Ls~--N~l~~~-----~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~l~~N~l~~~----~   64 (195)
                      +|+.|+|+.  |...+.     +...+  ..+++|+.|+|.+|.+....+..+   ..+++|++|+|+.|.++..    +
T Consensus       220 ~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L  299 (362)
T 2ra8_A          220 NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLL  299 (362)
T ss_dssp             TCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHH
T ss_pred             CCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHH
Confidence            588899863  221111     11122  257899999999999874333232   3578999999999999764    2


Q ss_pred             chhhhcCCCccEEEcccCcCc
Q 035751           65 PKQLLSVTTLALLNLSYNRLW   85 (195)
Q Consensus        65 p~~~~~l~~L~~L~l~~N~l~   85 (195)
                      +..+..+++|+.|++++|.++
T Consensus       300 ~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          300 LDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             HTTHHHHTTCSEEECCSBBCC
T ss_pred             HhhcccCCcceEEECCCCcCC
Confidence            334456799999999999887

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.27  E-value=0.00015  Score=53.36  Aligned_cols=41  Identities=20%  Similarity=0.234  Sum_probs=17.1

Q ss_pred             CCCCCCcEEeCCCCcCCCC----CchhhhcCCCccEEEcccCcCc
Q 035751           45 DNMTALESLDLSFNKLEGR----IPKQLLSVTTLALLNLSYNRLW   85 (195)
Q Consensus        45 ~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~   85 (195)
                      ..-+.|+.|+|++|.|...    +-..+..-..|+.|+|+.|.|+
T Consensus        67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            3334444445544444321    1122333344445555554443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.94  E-value=0.0015  Score=52.81  Aligned_cols=61  Identities=21%  Similarity=0.241  Sum_probs=28.8

Q ss_pred             hcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccC
Q 035751           20 LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYN   82 (195)
Q Consensus        20 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N   82 (195)
                      |..+.+|+.+.+..+ ++......|..+.+|+.+++..+ ++..-..+|.++.+|+.+++..|
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            444555555555443 33233344555555555555432 33233344555555555555443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.76  E-value=0.00059  Score=49.26  Aligned_cols=62  Identities=6%  Similarity=0.098  Sum_probs=48.4

Q ss_pred             CCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCc-CCCCCchhhhcC----CCccEEEcccCc-Cc
Q 035751           24 KSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNK-LEGRIPKQLLSV----TTLALLNLSYNR-LW   85 (195)
Q Consensus        24 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l----~~L~~L~l~~N~-l~   85 (195)
                      ..|+.||++++.++..--..+..+++|++|+|+++. ++..--..+..+    ++|+.|+++++. +|
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            579999999999886655667899999999999985 664433445553    479999999975 65

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.74  E-value=0.00074  Score=49.62  Aligned_cols=82  Identities=11%  Similarity=0.210  Sum_probs=60.8

Q ss_pred             CccEEEecCC-cCCC----CcchhhcCCCCCcEEEccCCCCCCC----CccccCCCCCCcEEeCCCCcCCCC----Cchh
Q 035751            1 MFRATDLSSN-RFCG----EIPKVLGNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGR----IPKQ   67 (195)
Q Consensus         1 ~L~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~   67 (195)
                      +|++|+|++| .|..    .+-+.+..-+.|+.|+|++|.|...    +...+..-+.|++|+|++|.|...    +-..
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a  121 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS  121 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence            4789999986 7763    2445567778999999999999732    333445568899999999999753    2234


Q ss_pred             hhcCCCccEEEcccC
Q 035751           68 LLSVTTLALLNLSYN   82 (195)
Q Consensus        68 ~~~l~~L~~L~l~~N   82 (195)
                      +..-..|+.|+|++|
T Consensus       122 L~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          122 TLVTQSIVEFKADNQ  136 (197)
T ss_dssp             TTTTCCCSEEECCCC
T ss_pred             HhhCCceeEEECCCC
Confidence            555677999999865

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.72  E-value=0.0048  Score=49.72  Aligned_cols=78  Identities=12%  Similarity=0.159  Sum_probs=49.0

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |+.+.+..+... .-...|.++..|+.+.+.. .++......|.++.+|+.+++..+ ++.....+|..+.+|+.+.+..
T Consensus       267 L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~  343 (394)
T 4gt6_A          267 LASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS  343 (394)
T ss_dssp             CCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT
T ss_pred             ccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc
Confidence            555666554333 4445677777777777753 344344556777777777777654 5434455677777777777754


Q ss_pred             C
Q 035751           82 N   82 (195)
Q Consensus        82 N   82 (195)
                      +
T Consensus       344 s  344 (394)
T 4gt6_A          344 S  344 (394)
T ss_dssp             T
T ss_pred             c
Confidence            4

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.44  E-value=0.0043  Score=49.59  Aligned_cols=79  Identities=15%  Similarity=0.173  Sum_probs=61.1

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |+.+.+..+ ++.+-...|.++.+|+.+.+..+ +.......|..+.+|+.+.+.++.++.....+|.++.+|+.+++..
T Consensus       242 L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          242 LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             ceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence            567777665 55455677888899999998765 4435556788899999999998888856667888999999999875


Q ss_pred             C
Q 035751           82 N   82 (195)
Q Consensus        82 N   82 (195)
                      +
T Consensus       320 ~  320 (379)
T 4h09_A          320 A  320 (379)
T ss_dssp             T
T ss_pred             c
Confidence            4

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.01  E-value=0.016  Score=46.24  Aligned_cols=81  Identities=14%  Similarity=0.114  Sum_probs=55.6

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |+.+.+..+ +.......|.++..|+.+.+..+ ++......|..+.+|+.+.+..+ ++......|..+.+|+.+.+.+
T Consensus       219 l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~  295 (379)
T 4h09_A          219 LKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDN  295 (379)
T ss_dssp             CSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECC
T ss_pred             cceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccc
Confidence            444555433 34344566778888888888776 55355567888888888888654 5434455778888899888887


Q ss_pred             CcCc
Q 035751           82 NRLW   85 (195)
Q Consensus        82 N~l~   85 (195)
                      +.++
T Consensus       296 ~~i~  299 (379)
T 4h09_A          296 SAIE  299 (379)
T ss_dssp             TTCC
T ss_pred             cccc
Confidence            7776

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.90  E-value=0.024  Score=45.61  Aligned_cols=64  Identities=11%  Similarity=0.194  Sum_probs=38.0

Q ss_pred             chhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccC
Q 035751           17 PKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYN   82 (195)
Q Consensus        17 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N   82 (195)
                      ..+|.++..|+.+.+..+... .....|.+++.|+.+.+. +.++......|..+.+|+.+++..+
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~  321 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG  321 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc
Confidence            345666667777776655443 444556666777777765 3344344456666677777766543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.46  E-value=0.0096  Score=47.97  Aligned_cols=79  Identities=14%  Similarity=0.096  Sum_probs=63.9

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.+.+..+ +..+-..+|.++.+|+.+++..+ ++.....+|.++.+|+.+++..| ++.....+|.++.+|+.+++.
T Consensus       298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            4677888765 66455678999999999999865 66455678999999999999877 765667789999999999997


Q ss_pred             cC
Q 035751           81 YN   82 (195)
Q Consensus        81 ~N   82 (195)
                      .+
T Consensus       375 ~~  376 (394)
T 4fs7_A          375 KR  376 (394)
T ss_dssp             GG
T ss_pred             CC
Confidence            65

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=88.70  E-value=0.2  Score=27.09  Aligned_cols=16  Identities=19%  Similarity=0.227  Sum_probs=7.0

Q ss_pred             hhhhhhhHHHHHHHHH
Q 035751          147 AKMGYAFGLVIGLSIG  162 (195)
Q Consensus       147 ~~~~~~~~~~~~~~~~  162 (195)
                      ++.|++.|+++.++++
T Consensus        13 IA~gVVgGv~~~~ii~   28 (44)
T 2ks1_B           13 IATGMVGALLLLLVVA   28 (44)
T ss_dssp             STHHHHHHHHHHHHHH
T ss_pred             EEeehhHHHHHHHHHH
Confidence            4445544444433333

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=86.68  E-value=0.36  Score=26.08  Aligned_cols=13  Identities=31%  Similarity=0.250  Sum_probs=5.7

Q ss_pred             hhhhhhhHHHHHH
Q 035751          147 AKMGYAFGLVIGL  159 (195)
Q Consensus       147 ~~~~~~~~~~~~~  159 (195)
                      ++.|++.|+++.+
T Consensus        12 IA~gVVgGv~~v~   24 (44)
T 2l2t_A           12 IAAGVIGGLFILV   24 (44)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             EEEeehHHHHHHH
Confidence            4444444444433

>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}

Probab=84.89  E-value=0.85  Score=24.00  Aligned_cols=13  Identities=38%  Similarity=0.429  Sum_probs=5.7

Q ss_pred             hhhhhhhHHHHHH
Q 035751          147 AKMGYAFGLVIGL  159 (195)
Q Consensus       147 ~~~~~~~~~~~~~  159 (195)
                      ++.+++.|+++.+
T Consensus        15 I~~~vv~Gv~ll~   27 (41)
T 2k9y_A           15 VIGGVAVGVVLLL   27 (41)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             EEeehhHHHHHHH
Confidence            3444444444433

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=83.85  E-value=1.5  Score=22.85  Aligned_cols=11  Identities=36%  Similarity=0.842  Sum_probs=5.4

Q ss_pred             hhhhhHHHHHH
Q 035751          149 MGYAFGLVIGL  159 (195)
Q Consensus       149 ~~~~~~~~~~~  159 (195)
                      .|++++.++++
T Consensus        14 AGiVvG~v~gv   24 (38)
T 2k1k_A           14 VAVIFGLLLGA   24 (38)
T ss_dssp             HHHHHHHHHHH
T ss_pred             eeeehHHHHHH
Confidence            45555554443

>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=83.10  E-value=2.8  Score=25.66  Aligned_cols=8  Identities=0%  Similarity=-0.218  Sum_probs=3.3

Q ss_pred             hhhhhhhH
Q 035751          147 AKMGYAFG  154 (195)
Q Consensus       147 ~~~~~~~~  154 (195)
                      ++.|++++
T Consensus        13 Iv~gvi~g   20 (79)
T 2knc_B           13 VLLSVMGA   20 (79)
T ss_dssp             HHHHHHHH
T ss_pred             hHHHHHHH
Confidence            33444444

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=80.04  E-value=2.4  Score=22.81  Aligned_cols=24  Identities=13%  Similarity=-0.017  Sum_probs=11.1

Q ss_pred             hhhhhhhhHHHHHHHHHHHHhccC
Q 035751          146 MAKMGYAFGLVIGLSIGYMVFSAR  169 (195)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~  169 (195)
                      ..+++.++++++.+++++++++++
T Consensus        15 ~gVVgGv~~~~ii~~~~~~~~RRr   38 (44)
T 2ks1_B           15 TGMVGALLLLLVVALGIGLFMRRR   38 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eehhHHHHHHHHHHHHHHHHhhhh
Confidence            334444444444445555555433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	195
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	7e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.5 bits (166), Expect = 1e-14
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L  N      P  + +   L+ L  ++N ++     S  N+T +  L    N++    P
Sbjct: 313 TLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

Query: 66  KQLLSVTTLALLNLSYN 82
             L ++T +  L L+  
Sbjct: 369 --LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.0 bits (131), Expect = 6e-10
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 26  LKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLW 85
           L  L L  N+++   PVS  ++T L+ L  + NK+       L ++T +  L+  +N++ 
Sbjct: 309 LTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQIS 364

Query: 86  GRIPRGN 92
              P  N
Sbjct: 365 DLTPLAN 371

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 5e-06
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
             ++N+     P       +L  L+L+ N L      +  ++T L  LDL+ N++    P
Sbjct: 203 IATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 258

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGN 92
             L  +T L  L L  N++    P   
Sbjct: 259 --LSGLTKLTELKLGANQISNISPLAG 283

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 24/99 (24%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS--------------------FD 45
           DL++N+     P  L     L  L L  N ++   P++                      
Sbjct: 247 DLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 304

Query: 46  NMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRL 84
           N+  L  L L FN +    P  + S+T L  L  + N++
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV 341

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 6/106 (5%)

Query: 4   ATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
            T L        + +   +   +  L      +  +I    + +  L  ++ S N+L   
Sbjct: 26  KTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDI 81

Query: 64  IPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLC 109
            P  L ++T L  + ++ N++    P  N  N      +   I   
Sbjct: 82  TP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 125

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.1 bits (162), Expect = 4e-14
 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 44  FDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYI 103
                 L  LDL  N++ G +P+ L  +  L  LN+S+N L G IP+G     F+  +Y 
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299

Query: 104 GNIHLCGEPLTVTCS 118
            N  LCG PL   C+
Sbjct: 300 NNKCLCGSPLP-ACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 63.2 bits (152), Expect = 1e-12
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 1   MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
                DL +NR  G +P+ L   K L  LN+S N+L G IP    N+   +    + NK 
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.9 bits (94), Expect = 4e-05
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIP 41
           ++S N  CGEIP+  GN +   V   ++N      P
Sbjct: 274 NVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.0 bits (84), Expect = 8e-04
 Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 3/109 (2%)

Query: 6   DLSSNRFCG--EIPKVLGNFKSLKVLNLSHN-SLTGNIPVSFDNMTALESLDLSFNKLEG 62
           DLS         IP  L N   L  L +    +L G IP +   +T L  L ++   + G
Sbjct: 56  DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115

Query: 63  RIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGE 111
            IP  L  + TL  L+ SYN L G +P                  + G 
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.6 bits (135), Expect = 2e-10
 Identities = 22/107 (20%), Positives = 38/107 (35%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           DL +N+          N K+L  L L +N ++   P +F  +  LE L LS N+L+    
Sbjct: 37  DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 96

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEP 112
           K   ++  L +      ++   +  G                   E 
Sbjct: 97  KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 143

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.3 bits (129), Expect = 1e-09
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 2/105 (1%)

Query: 9   SNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQL 68
           S+    ++PK L       +L+L +N +T      F N+  L +L L  NK+    P   
Sbjct: 18  SDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 75

Query: 69  LSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPL 113
             +  L  L LS N+L     +  +              +     
Sbjct: 76  APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF 120

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 3e-07
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 3/104 (2%)

Query: 9   SNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQL 68
             +  G         K L  + ++  ++T  IP       +L  L L  NK+       L
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASL 191

Query: 69  LSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEP 112
             +  LA L LS+N +               + ++ N  L   P
Sbjct: 192 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 235

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.0 bits (92), Expect = 7e-05
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L  N+        L    +L  L LS NS++     S  N   L  L L+ NKL  ++P
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 235

Query: 66  KQLLSVTTLALLNLSYNRLWGRIPRG--NQFNTFENDSYIGNIHLCGEPLT 114
             L     + ++ L  N +   I              +    + L   P+ 
Sbjct: 236 GGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (125), Expect = 3e-09
 Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 10/107 (9%)

Query: 6   DLSSNRFCGE-IPKVLGNFKSLKVLNLSHNSLTG----NIPVSFDNMTALESLDLSFNKL 60
           D+           ++L   +  +V+ L    LT     +I  +     AL  L+L  N+L
Sbjct: 8   DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 67

Query: 61  EGRIPKQLLSV-----TTLALLNLSYNRLWGRIPRGNQFNTFENDSY 102
                  +L         +  L+L    L G              + 
Sbjct: 68  GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL 114

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 3e-08
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 9/75 (12%)

Query: 6   DLSSNRF----CGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSF-----DNMTALESLDLS 56
            L+        C  +   L    SL+ L+LS+N L     +            LE L L 
Sbjct: 375 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY 434

Query: 57  FNKLEGRIPKQLLSV 71
                  +  +L ++
Sbjct: 435 DIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 4e-07
 Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 9/78 (11%)

Query: 22  NFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGRIPKQLLSV-----T 72
               L+VL L+   ++ +    +  +     +L  LDLS N L      QL+        
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 73  TLALLNLSYNRLWGRIPR 90
            L  L L        +  
Sbjct: 427 LLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-05
 Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 5/65 (7%)

Query: 25 SLKVLNLSHNSLTGN-IPVSFDNMTALESLDLSFNKLEGR----IPKQLLSVTTLALLNL 79
           ++ L++    L+          +   + + L    L       I   L     LA LNL
Sbjct: 3  DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 80 SYNRL 84
            N L
Sbjct: 63 RSNEL 67

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 1e-07
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 1   MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
                    N    EI  +     SL+ LN+S+N L   +P        LE L  SFN L
Sbjct: 261 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL 316

Query: 61  EGRIPKQLLSVTTLALLNLSYNRL 84
              +P+   ++     L++ YN L
Sbjct: 317 A-EVPELPQNLKQ---LHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 2e-06
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
           ++S+N+   E+P +      L+ L  S N L   +P    N   L+ L + +N L    P
Sbjct: 290 NVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQN---LKQLHVEYNPLRE-FP 340

Query: 66  KQLLSVTTL 74
               SV  L
Sbjct: 341 DIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 4e-05
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 8/90 (8%)

Query: 24  KSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNR 83
           +    L L++  L+ ++P   +    LESL  S N L   +P+      +L  L +  N 
Sbjct: 38  RQAHELELNNLGLS-SLP---ELPPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNN 89

Query: 84  LWGRIPRGNQFNTFENDSYIGNIHLCGEPL 113
           L                +         +  
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNS 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 5e-07
 Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 24/104 (23%)

Query: 3   RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPV-------------------- 42
           R   L+       +   L     +  L+LSHN L    P                     
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 43  -SFDNMTALESLDLSFNKLEG-RIPKQLLSVTTLALLNLSYNRL 84
               N+  L+ L L  N+L+     + L+S   L LLNL  N L
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.1 bits (80), Expect = 0.001
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 27  KVLNLSHNSLTG-NIPVSFDNMTALESLDLSFNKL------EGRIPKQLLSVTTL 74
           + L L +N L          +   L  L+L  N L      + R+ + L SV+++
Sbjct: 68  QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 6   DLSSNRF-CGEIPKVLGNFKSLKVLNLSHNSLTG 38
            L +NR       + L +   L +LNL  NSL  
Sbjct: 71  LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 1e-06
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 3/87 (3%)

Query: 22  NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81
           N    + L+L    +   I      +   +++D S N++       LL    L  L ++ 
Sbjct: 16  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLL--RRLKTLLVNN 72

Query: 82  NRLWGRIPRGNQFNTFENDSYIGNIHL 108
           NR+       +Q      +  + N  L
Sbjct: 73  NRICRIGEGLDQALPDLTELILTNNSL 99

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 14/114 (12%), Positives = 29/114 (25%), Gaps = 3/114 (2%)

Query: 31  LSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPR 90
           L+   L       + N      LDL   K+   I     ++     ++ S N +      
Sbjct: 3   LTAE-LIEQAA-QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGF 59

Query: 91  GNQFNTFENDSYIGNIHLCGEPLTVTCSNDAVPKAPPSASTDHEEDETTSWFDW 144
                          I   GE L     +        ++  +  + +  +    
Sbjct: 60  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 113

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 8   SSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLS 56
             N+     P  L +  +L  ++L +N ++   P    N + L  + L+
Sbjct: 181 DDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 5e-06
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 20  LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79
           L N   L  L    N ++   P    ++  L  + L  N++    P  L + + L ++ L
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 80  S 80
           +
Sbjct: 225 T 225

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 8e-06
 Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 6  DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
          +         +P  L   K   +L+LS N L      +    T L  L+L   +L     
Sbjct: 16 NCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72

Query: 66 KQLLS 70
             L 
Sbjct: 73 DGTLP 77

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 8   SSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
           ++N        +L   ++L  L L  NSL   IP  F     L    L  N  
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-05
 Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 21 GNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80
              S   +N    +LT  +P           L LS N L       L+  T L  LNL 
Sbjct: 7  SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 81 YNRLW 85
             L 
Sbjct: 64 RAELT 68

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 9/118 (7%)

Query: 10  NRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLL 69
           N      P +L     L+ L+L++N+LT       + +  L++L L  N L   IPK   
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192

Query: 70  SVTTLALLNLSYNRL--------WGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSN 119
               L    L  N          + R  + N  N +     +    +     +V C N
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDN 250

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.9 bits (99), Expect = 1e-05
 Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 13/91 (14%)

Query: 1   MFRATDLSSNRFCGEIPKVLGN------FKSLKVLNLSHNSLTGNIPVS-----FDNMTA 49
             R   L+           + +         L+ L L +N +  +   +      + M  
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 50  LESLDLSFNKL--EGRIPKQLLSVTTLALLN 78
           L  L+L+ N+   E  +  ++  V +     
Sbjct: 304 LLFLELNGNRFSEEDDVVDEIREVFSTRGRG 334

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 3e-04
 Identities = 24/184 (13%), Positives = 50/184 (27%), Gaps = 4/184 (2%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLE 61
           D  +      +  VL    S+K + LS N++       +  +  +   LE  + S     
Sbjct: 13  DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72

Query: 62  GRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDA 121
               +   ++  L    L   +L       N F     +  I  +        +   N+ 
Sbjct: 73  RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 132

Query: 122 VPKAPPSASTDHEEDETTSWFDWKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARMVEGD 181
           +     +      ++   +        +         L  G M   A+  Q    +    
Sbjct: 133 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 192

Query: 182 HQQM 185
             Q 
Sbjct: 193 MVQN 196

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.4 bits (82), Expect = 0.001
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 11/66 (16%)

Query: 30  NLSHNSLTGNIPV------SFDNMTALESLDLSFNKLEGRIPKQLLSV-----TTLALLN 78
            L+   L+           S      L++L L +N++E    + L +V       L  L 
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 79  LSYNRL 84
           L+ NR 
Sbjct: 309 LNGNRF 314

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 1e-05
 Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 1/52 (1%)

Query: 9   SNRFCGEIP-KVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNK 59
            N    E+P  V        +L++S   +        +N+  L +      K
Sbjct: 185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-05
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 1   MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
                 L +N       + L   ++L+ L L+ N    +          L+    S +++
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEV 260

Query: 61  EGRIPKQLLSVTTLALLNLSYNRLWG 86
              +P++L       L  L+ N L G
Sbjct: 261 PCSLPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 18/84 (21%), Positives = 31/84 (36%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
            L         P +     +L+ L L  N+L      +F ++  L  L L  N++     
Sbjct: 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170

Query: 66  KQLLSVTTLALLNLSYNRLWGRIP 89
           +    + +L  L L  NR+    P
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHP 194

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 20/78 (25%), Positives = 29/78 (37%)

Query: 7   LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
           L  NR      +      SL  L L  N +    P +F ++  L +L L  N L     +
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219

Query: 67  QLLSVTTLALLNLSYNRL 84
            L  +  L  L L+ N  
Sbjct: 220 ALAPLRALQYLRLNDNPW 237

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 4e-05
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 8   SSNRFCGEIPKVLGNFKSLKVLNLSHNSLTG--NIPVSFDNMTALESLDLSFNKLEGRIP 65
             +     +  +  N   L  LNLS+N L    ++         L+ L+LS N+L+    
Sbjct: 49  RRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE 108

Query: 66  KQLLSVTTLALLNLSYNRLWGRIP 89
              +    L  L L  N L     
Sbjct: 109 LDKIKGLKLEELWLDGNSLSDTFR 132

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 6   DLSSNRF--CGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
           +LS+NR     ++  ++    +LK+LNLS N L     +       LE L L  N L   
Sbjct: 71  NLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT 130

Query: 64  IPKQ 67
              Q
Sbjct: 131 FRDQ 134

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 6e-05
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 22 NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81
           F      NL   S+T    V+ + + +++ +  + + ++     Q L    +  L L+ 
Sbjct: 22 AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYL--PNVTKLFLNG 77

Query: 82 NRLWGRIPRGN 92
          N+L    P  N
Sbjct: 78 NKLTDIKPLAN 88

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 20  LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLS 56
           L     L+ L LS N ++ ++  +   +  L+ L+L 
Sbjct: 174 LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 7/59 (11%), Positives = 20/59 (33%), Gaps = 4/59 (6%)

Query: 4  ATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG 62
            +L        + +      S+  +  +++ +     +    +  +  L L+ NKL  
Sbjct: 28 KDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNKLTD 82

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 7e-05
 Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 6   DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGN-IPVSFDNMTALESLDLSFNKLEGRI 64
               +     + +    F+ ++ ++LS++ +  + +       + L++L L   +L   I
Sbjct: 29  RCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI 87

Query: 65  PKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFEN 99
              L   + L  LNLS    +         ++   
Sbjct: 88  VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 7e-04
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 1/107 (0%)

Query: 9   SNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIP-VSFDNMTALESLDLSFNKLEGRIPKQ 67
           +     +    L   ++L  L + +     ++       +  L +L +  + L    P  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 68  LLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLT 114
                 L+ LNLS+N L     +  Q  + +     GN   C   L 
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 4  ATDLSSNRFCGEIPKV------LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESL 53
          AT+       G IP +      L   K+ K L LS N++   I  S   M  L  L
Sbjct: 22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRIL 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	195
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.56
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.53
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.52
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.44
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.42
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.35
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.35
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.3
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.28
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.11
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.07
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.07
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.03
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.01
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.96
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.96
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.94
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.92
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.83
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.77
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.61
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.49
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.44
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.36
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.25
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.18
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.14
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.04
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.99
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.91
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.8
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.56
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.35
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.19

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=6.5e-17  Score=118.04  Aligned_cols=113  Identities=26%  Similarity=0.384  Sum_probs=91.7

Q ss_pred             CccEEEecCCcCCCCc-chhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751            1 MFRATDLSSNRFCGEI-PKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l   79 (195)
                      ++++|+|++|.|++.+ +..|..+++|+.|+|++|.+....+..|..+++|++|++++|+|+...|..|.++++|++|+|
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence            4789999999998644 577899999999999999999899999999999999999999999877888999999999999


Q ss_pred             ccCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751           80 SYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS  118 (195)
Q Consensus        80 ~~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~  118 (195)
                      ++|.|++..|..     |..+..+....+.++++.++|.
T Consensus       110 ~~N~l~~i~~~~-----f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_         110 YDNQISCVMPGS-----FEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CSSCCCEECTTS-----STTCTTCCEEECTTCCBCCSGG
T ss_pred             CCccccccCHHH-----hcCCcccccccccccccccccc
Confidence            999999554442     2222333344556666666554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.65  E-value=1.5e-16  Score=124.05  Aligned_cols=113  Identities=34%  Similarity=0.588  Sum_probs=102.6

Q ss_pred             cEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccC
Q 035751            3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYN   82 (195)
Q Consensus         3 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N   82 (195)
                      ..++++++.+.+.+|..+..++.++.+++++|.+.+.+| .+..+++|+.|++++|+++|.+|..+..+++|++|+|++|
T Consensus       200 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCC
Confidence            467888888888889889999999999999999997655 6889999999999999999999999999999999999999


Q ss_pred             cCccCCCCCCccCCCCcccccCCccccCCCCCCCC
Q 035751           83 RLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTC  117 (195)
Q Consensus        83 ~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c  117 (195)
                      +++|.+|....+..+..+.+.+|..+||.|++ .|
T Consensus       279 ~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         279 NLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             EEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            99999998878889999999999999999875 44

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=7e-16  Score=112.45  Aligned_cols=88  Identities=20%  Similarity=0.278  Sum_probs=82.1

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.|+|++|.+.+..+..|..+++|++|+|++|+|+...|..|.++++|++|+|++|+|++..|+.|..+++|++++++
T Consensus        55 ~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~  134 (192)
T d1w8aa_          55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             eEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccc
Confidence            58999999999999999999999999999999999998888889999999999999999998888889999999999999


Q ss_pred             cCcCccCC
Q 035751           81 YNRLWGRI   88 (195)
Q Consensus        81 ~N~l~g~~   88 (195)
                      +|++.+..
T Consensus       135 ~N~~~~~~  142 (192)
T d1w8aa_         135 SNPFNCNC  142 (192)
T ss_dssp             TCCBCCSG
T ss_pred             cccccccc
Confidence            99997543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=9.6e-15  Score=99.16  Aligned_cols=81  Identities=28%  Similarity=0.356  Sum_probs=71.5

Q ss_pred             cEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccC
Q 035751            3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYN   82 (195)
Q Consensus         3 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N   82 (195)
                      |.|||++|+++ .++ .+..+++|++|++++|.|+ .+|..++.+++|++|++++|.|+ .+| .+..+++|+.+++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            57999999999 555 4899999999999999999 67888999999999999999998 455 4889999999999999


Q ss_pred             cCccCCC
Q 035751           83 RLWGRIP   89 (195)
Q Consensus        83 ~l~g~~p   89 (195)
                      +++ .+|
T Consensus        76 ~i~-~~~   81 (124)
T d1dcea3          76 RLQ-QSA   81 (124)
T ss_dssp             CCC-SSS
T ss_pred             ccC-CCC
Confidence            998 344

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4e-14  Score=107.86  Aligned_cols=111  Identities=27%  Similarity=0.302  Sum_probs=72.1

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      |+.|++++|.+.+..+..+..+.+++.|++++|.++...+..+..+++|+.+++++|++++..+..+..+++|+.|+|++
T Consensus       102 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~  181 (266)
T d1p9ag_         102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE  181 (266)
T ss_dssp             CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             cccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeeccc
Confidence            33444444444433444444455555555556666655556667788888999999999877777788889999999999


Q ss_pred             CcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751           82 NRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS  118 (195)
Q Consensus        82 N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~  118 (195)
                      |.|+ .+|...     .....+....+.|||+.|+|.
T Consensus       182 N~L~-~lp~~~-----~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         182 NSLY-TIPKGF-----FGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             SCCC-CCCTTT-----TTTCCCSEEECCSCCBCCSGG
T ss_pred             CCCc-ccChhH-----CCCCCCCEEEecCCCCCCCcc
Confidence            9998 777541     112223344666777777775

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.4e-15  Score=113.27  Aligned_cols=113  Identities=18%  Similarity=0.197  Sum_probs=79.1

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.+++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.+++++|++++..|..|..+++|++|+++
T Consensus       130 ~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~  209 (284)
T d1ozna_         130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF  209 (284)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             ccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccc
Confidence            36677788888776666677777778888888888776667777778888888888888877777777777888888888


Q ss_pred             cCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751           81 YNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS  118 (195)
Q Consensus        81 ~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~  118 (195)
                      +|.+++..|..     +.....+....+.+||+.|+|.
T Consensus       210 ~N~i~~~~~~~-----~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         210 ANNLSALPTEA-----LAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             SSCCSCCCHHH-----HTTCTTCCEEECCSSCEECSGG
T ss_pred             ccccccccccc-----cccccccCEEEecCCCCCCCcc
Confidence            88877544321     2222223344566777777775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.9e-14  Score=99.35  Aligned_cols=109  Identities=19%  Similarity=0.232  Sum_probs=87.2

Q ss_pred             cEEEecCCcCCCCcchhhcCCCCCcEEEccCC-CCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHN-SLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         3 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      .+++.+++.+. ..|..+..+++|++|++++| .++...+..|..+++|+.|++++|+|+...|..|..+++|++|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            45788888888 67888999999999999866 48867777899999999999999999977788899999999999999


Q ss_pred             CcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751           82 NRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS  118 (195)
Q Consensus        82 N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~  118 (195)
                      |.++ .+|... +..   .. +....+.+||+.|+|.
T Consensus        90 N~l~-~l~~~~-~~~---~~-l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3          90 NALE-SLSWKT-VQG---LS-LQELVLSGNPLHCSCA  120 (156)
T ss_dssp             SCCS-CCCSTT-TCS---CC-CCEEECCSSCCCCCGG
T ss_pred             CCCc-ccChhh-hcc---cc-ccccccCCCcccCCch
Confidence            9998 555431 211   11 3345677778887775

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=6.5e-14  Score=94.97  Aligned_cols=83  Identities=35%  Similarity=0.482  Sum_probs=73.3

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCC-chhhhcCCCccEEEc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI-PKQLLSVTTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l   79 (195)
                      +|++|++++|.|+ .+|+.++.+++|+.|++++|.|+ .+| .+..+++|++|++++|+++... ...+..+++|+.+++
T Consensus        21 ~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l   97 (124)
T d1dcea3          21 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL   97 (124)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEEC
Confidence            4899999999999 67888999999999999999999 455 5899999999999999998442 256889999999999


Q ss_pred             ccCcCcc
Q 035751           80 SYNRLWG   86 (195)
Q Consensus        80 ~~N~l~g   86 (195)
                      ++|+++.
T Consensus        98 ~~N~i~~  104 (124)
T d1dcea3          98 QGNSLCQ  104 (124)
T ss_dssp             TTSGGGG
T ss_pred             CCCcCCc
Confidence            9999983

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.9e-14  Score=100.45  Aligned_cols=82  Identities=18%  Similarity=0.194  Sum_probs=72.0

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      ++++|||++|.|+ .++..+..+++|+.|+|++|.|+ .++ .|..+++|++|++++|.++...+..+..+++|+.|+++
T Consensus        19 ~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          19 RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             SCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             cCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            4789999999999 56777788999999999999999 554 58999999999999999996555566789999999999


Q ss_pred             cCcCc
Q 035751           81 YNRLW   85 (195)
Q Consensus        81 ~N~l~   85 (195)
                      +|.++
T Consensus        96 ~N~i~  100 (162)
T d1a9na_          96 NNSLV  100 (162)
T ss_dssp             SCCCC
T ss_pred             ccccc
Confidence            99997

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.44  E-value=3.3e-14  Score=110.52  Aligned_cols=89  Identities=34%  Similarity=0.524  Sum_probs=75.1

Q ss_pred             ccEEEecCCcCCC--CcchhhcCCCCCcEEEccC-CCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEE
Q 035751            2 FRATDLSSNRFCG--EIPKVLGNFKSLKVLNLSH-NSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLN   78 (195)
Q Consensus         2 L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~   78 (195)
                      ++.|||++|.++|  .+|..+++|++|++|+|++ |.++|.+|..|+++++|++|++++|++.+..+..+..+..|+.++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            5778999998887  4778899999999999986 788888898899999999999999988887787788888888888


Q ss_pred             cccCcCccCCCC
Q 035751           79 LSYNRLWGRIPR   90 (195)
Q Consensus        79 l~~N~l~g~~p~   90 (195)
                      +++|.+.+.+|.
T Consensus       132 l~~N~~~~~~p~  143 (313)
T d1ogqa_         132 FSYNALSGTLPP  143 (313)
T ss_dssp             CCSSEEESCCCG
T ss_pred             cccccccccCch
Confidence            888888777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.5e-13  Score=95.65  Aligned_cols=85  Identities=24%  Similarity=0.217  Sum_probs=73.9

Q ss_pred             CccEEEecCC-cCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751            1 MFRATDLSSN-RFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL   79 (195)
Q Consensus         1 ~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l   79 (195)
                      +|++|++++| .|+...+..|.++++|+.|+|++|+|+...|..|..+++|++|+|++|+|+ .+|.......+|+.|+|
T Consensus        32 ~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L  110 (156)
T d2ifga3          32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVL  110 (156)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEEC
T ss_pred             ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhcccccccccc
Confidence            5789999876 588766788999999999999999999888888999999999999999999 55655555568999999


Q ss_pred             ccCcCcc
Q 035751           80 SYNRLWG   86 (195)
Q Consensus        80 ~~N~l~g   86 (195)
                      ++|++..
T Consensus       111 ~~Np~~C  117 (156)
T d2ifga3         111 SGNPLHC  117 (156)
T ss_dssp             CSSCCCC
T ss_pred             CCCcccC
Confidence            9999963

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.35  E-value=2.1e-12  Score=99.73  Aligned_cols=88  Identities=25%  Similarity=0.278  Sum_probs=74.2

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.|++++|.+++..+..|..++.++.|++++|.+++..+..+..+++|++|+|++|.|+ .+|..+..+++|++|+++
T Consensus       172 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls  250 (305)
T d1xkua_         172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH  250 (305)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred             ccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECC
Confidence            4678888888888888888888888999999999888777888888889999999999888 668888888999999999


Q ss_pred             cCcCccCCCC
Q 035751           81 YNRLWGRIPR   90 (195)
Q Consensus        81 ~N~l~g~~p~   90 (195)
                      +|+|+ .++.
T Consensus       251 ~N~i~-~i~~  259 (305)
T d1xkua_         251 NNNIS-AIGS  259 (305)
T ss_dssp             SSCCC-CCCT
T ss_pred             CCccC-ccCh
Confidence            99887 4443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=8.2e-13  Score=101.24  Aligned_cols=89  Identities=22%  Similarity=0.214  Sum_probs=82.9

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.|++++|.+++..+..|.++++|+.+++++|.+++..|..|..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus       154 ~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~  233 (284)
T d1ozna_         154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN  233 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred             chhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEec
Confidence            47899999999998888999999999999999999998899999999999999999999998888899999999999999


Q ss_pred             cCcCccCCC
Q 035751           81 YNRLWGRIP   89 (195)
Q Consensus        81 ~N~l~g~~p   89 (195)
                      +|++.+..+
T Consensus       234 ~N~l~C~C~  242 (284)
T d1ozna_         234 DNPWVCDCR  242 (284)
T ss_dssp             SSCEECSGG
T ss_pred             CCCCCCCcc
Confidence            999986543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.3e-12  Score=95.87  Aligned_cols=85  Identities=25%  Similarity=0.230  Sum_probs=79.0

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      ++++|++++|.+....+..+..+++|+.|++++|++++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|+
T Consensus       125 ~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~  203 (266)
T d1p9ag_         125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLH  203 (266)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECC
T ss_pred             ccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEec
Confidence            4788999999999877888889999999999999999888888999999999999999999 889989999999999999


Q ss_pred             cCcCcc
Q 035751           81 YNRLWG   86 (195)
Q Consensus        81 ~N~l~g   86 (195)
                      +|++.+
T Consensus       204 ~Np~~C  209 (266)
T d1p9ag_         204 GNPWLC  209 (266)
T ss_dssp             SCCBCC
T ss_pred             CCCCCC
Confidence            999975

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.5e-12  Score=90.97  Aligned_cols=82  Identities=23%  Similarity=0.217  Sum_probs=71.0

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCc--hhhhcCCCccEEE
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP--KQLLSVTTLALLN   78 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~~l~~L~~L~   78 (195)
                      +|+.|||++|.|+ .++ .|..+++|++|++++|.++...+..+..+++|++|++++|.++. ++  ..+..+++|+.|+
T Consensus        42 ~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~  118 (162)
T d1a9na_          42 QFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLC  118 (162)
T ss_dssp             CCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEE
T ss_pred             cCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceeccccccc-cccccccccccccchhh
Confidence            4789999999999 454 58899999999999999996555567789999999999999984 44  4678899999999


Q ss_pred             cccCcCc
Q 035751           79 LSYNRLW   85 (195)
Q Consensus        79 l~~N~l~   85 (195)
                      +++|+++
T Consensus       119 l~~N~i~  125 (162)
T d1a9na_         119 ILRNPVT  125 (162)
T ss_dssp             CCSSGGG
T ss_pred             cCCCccc
Confidence            9999997

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.11  E-value=1.1e-10  Score=89.86  Aligned_cols=84  Identities=18%  Similarity=0.158  Sum_probs=73.1

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchh------hhcCCCc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQ------LLSVTTL   74 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~------~~~l~~L   74 (195)
                      +++.|++++|.+.+..+..+.++++|++|+|++|.|+ .+|..|..+++|++|++++|+|+......      ...+.+|
T Consensus       196 ~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L  274 (305)
T d1xkua_         196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY  274 (305)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred             cccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCC
Confidence            3678999999999888899999999999999999999 77889999999999999999998543323      3456889


Q ss_pred             cEEEcccCcCc
Q 035751           75 ALLNLSYNRLW   85 (195)
Q Consensus        75 ~~L~l~~N~l~   85 (195)
                      +.|++++|++.
T Consensus       275 ~~L~L~~N~~~  285 (305)
T d1xkua_         275 SGVSLFSNPVQ  285 (305)
T ss_dssp             SEEECCSSSSC
T ss_pred             CEEECCCCcCc
Confidence            99999999986

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.07  E-value=4.9e-10  Score=81.22  Aligned_cols=79  Identities=24%  Similarity=0.288  Sum_probs=54.1

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      ++++|++++|.++. ++ .+..+++|++|++++|.+++..|  ++.+++|++|++++|.+. .++ .+..++.|+.|+++
T Consensus        41 ~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          41 QVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLF  114 (199)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-cccccccccccccc
Confidence            35677777777773 32 36677777777777777774332  677777777777777776 333 36677777777777


Q ss_pred             cCcCc
Q 035751           81 YNRLW   85 (195)
Q Consensus        81 ~N~l~   85 (195)
                      +|.+.
T Consensus       115 ~~~~~  119 (199)
T d2omxa2         115 NNQIT  119 (199)
T ss_dssp             SSCCC
T ss_pred             ccccc
Confidence            77665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.07  E-value=1.3e-10  Score=91.44  Aligned_cols=94  Identities=19%  Similarity=0.278  Sum_probs=72.9

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      ++.++++.|.+++.  ..+..+++++.|++++|++++..  .+..+++|++|++++|.+++ ++ .+..+++|++|++++
T Consensus       287 l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~  360 (384)
T d2omza2         287 LTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGH  360 (384)
T ss_dssp             CSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCS
T ss_pred             cccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCC
Confidence            56788999998853  34788899999999999998653  37889999999999999984 44 688999999999999


Q ss_pred             CcCccCCCCCCccCCCCcccc
Q 035751           82 NRLWGRIPRGNQFNTFENDSY  102 (195)
Q Consensus        82 N~l~g~~p~~~~~~~~~~~~~  102 (195)
                      |++++..| ...+..+..+..
T Consensus       361 N~l~~l~~-l~~l~~L~~L~L  380 (384)
T d2omza2         361 NQISDLTP-LANLTRITQLGL  380 (384)
T ss_dssp             SCCCBCGG-GTTCTTCSEEEC
T ss_pred             CcCCCChh-hccCCCCCEeeC
Confidence            99986554 333444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.03  E-value=8.5e-10  Score=79.91  Aligned_cols=95  Identities=23%  Similarity=0.346  Sum_probs=72.4

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.+++..|  ++++++|++|++++|.+. .++ .+..++.|+.|++++|.+...  ..+..+++|+.|+++
T Consensus        63 nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~  136 (199)
T d2omxa2          63 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELS  136 (199)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECC
T ss_pred             CcCcCccccccccCccc--ccCCcccccccccccccc-ccc-ccccccccccccccccccccc--cccchhhhhHHhhhh
Confidence            58899999999986443  889999999999999987 444 478999999999999988743  347789999999999


Q ss_pred             cCcCccCCCCCCccCCCCcccc
Q 035751           81 YNRLWGRIPRGNQFNTFENDSY  102 (195)
Q Consensus        81 ~N~l~g~~p~~~~~~~~~~~~~  102 (195)
                      +|.+. .++.......+..+..
T Consensus       137 ~n~l~-~~~~l~~~~~L~~L~l  157 (199)
T d2omxa2         137 SNTIS-DISALSGLTSLQQLNF  157 (199)
T ss_dssp             SSCCC-CCGGGTTCTTCSEEEC
T ss_pred             hhhhc-cccccccccccccccc
Confidence            99887 3443323334444333

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.01  E-value=8.2e-10  Score=80.70  Aligned_cols=79  Identities=20%  Similarity=0.172  Sum_probs=60.7

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.++.. + .+..+++|++|++++|.+++. + .++.+++|++|++++|+++ .+| .+..+++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccc-ccc-cccccccccccccc
Confidence            467888888888743 3 367788888888888888843 3 3678888888888888887 344 47778888888888


Q ss_pred             cCcCc
Q 035751           81 YNRLW   85 (195)
Q Consensus        81 ~N~l~   85 (195)
                      +|.+.
T Consensus       121 ~~~~~  125 (210)
T d1h6ta2         121 HNGIS  125 (210)
T ss_dssp             TSCCC
T ss_pred             ccccc
Confidence            88776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.97  E-value=2.8e-12  Score=93.52  Aligned_cols=80  Identities=24%  Similarity=0.358  Sum_probs=61.1

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|.|+ .++ .+..+++|+.|+|++|.++ .+|..+..+++|++|++++|.++. + +.+..+++|+.|+++
T Consensus        49 ~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~  123 (198)
T d1m9la_          49 ACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVNLRVLYMS  123 (198)
T ss_dssp             TCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHHSSEEEES
T ss_pred             ccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-ccccccccccccccc
Confidence            4778888888888 344 4778888888888888887 556555556678888888888873 3 347778888888888


Q ss_pred             cCcCc
Q 035751           81 YNRLW   85 (195)
Q Consensus        81 ~N~l~   85 (195)
                      +|.++
T Consensus       124 ~N~i~  128 (198)
T d1m9la_         124 NNKIT  128 (198)
T ss_dssp             EEECC
T ss_pred             cchhc
Confidence            88886

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.96  E-value=1.3e-09  Score=85.65  Aligned_cols=98  Identities=22%  Similarity=0.268  Sum_probs=74.7

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.+++..+  +..+..++.++++.|.+++.  ..+..+++++.|++++|++++. + .+..+++|+.|+++
T Consensus       264 ~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~  337 (384)
T d2omza2         264 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFA  337 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECC
T ss_pred             cCCEeeccCcccCCCCc--cccccccccccccccccccc--cccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECC
Confidence            47889999999985433  77889999999999999843  3578889999999999999854 3 37889999999999


Q ss_pred             cCcCccCCCCCCccCCCCcccccCC
Q 035751           81 YNRLWGRIPRGNQFNTFENDSYIGN  105 (195)
Q Consensus        81 ~N~l~g~~p~~~~~~~~~~~~~~~n  105 (195)
                      +|.+++ ++....+..+..+...+|
T Consensus       338 ~n~l~~-l~~l~~l~~L~~L~l~~N  361 (384)
T d2omza2         338 NNKVSD-VSSLANLTNINWLSAGHN  361 (384)
T ss_dssp             SSCCCC-CGGGGGCTTCCEEECCSS
T ss_pred             CCCCCC-ChhHcCCCCCCEEECCCC
Confidence            999983 443333444555554443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.96  E-value=2.7e-09  Score=77.82  Aligned_cols=80  Identities=26%  Similarity=0.364  Sum_probs=66.6

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|++++|.|++. + .++.+++|+.|++++|.++ .+| .+..+++|+.|++++|.+. .+ ..+..++.++.++++
T Consensus        69 ~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~~  142 (210)
T d1h6ta2          69 NVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLG  142 (210)
T ss_dssp             TCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECC
T ss_pred             CCCEEeCCCccccCc-c-ccccCcccccccccccccc-ccc-ccccccccccccccccccc-cc-ccccccccccccccc
Confidence            589999999999964 3 3689999999999999998 455 5888999999999999987 33 357788888888888


Q ss_pred             cCcCcc
Q 035751           81 YNRLWG   86 (195)
Q Consensus        81 ~N~l~g   86 (195)
                      +|.+++
T Consensus       143 ~n~l~~  148 (210)
T d1h6ta2         143 NNKITD  148 (210)
T ss_dssp             SSCCCC
T ss_pred             cccccc
Confidence            888873

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.1e-09  Score=81.18  Aligned_cols=86  Identities=16%  Similarity=0.176  Sum_probs=72.2

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCC-ccccCCCCCCcEEeCC-CCcCCCCCchhhhcCCCccEEE
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNI-PVSFDNMTALESLDLS-FNKLEGRIPKQLLSVTTLALLN   78 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~l~-~N~l~~~~p~~~~~l~~L~~L~   78 (195)
                      ++++|||++|.|+...+..|.++++|++|++++|.+...+ +..|..++.++++++. .|.+....+..+..+++|+.++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            4789999999999655567899999999999999987544 4568889999999876 4678767778889999999999


Q ss_pred             cccCcCcc
Q 035751           79 LSYNRLWG   86 (195)
Q Consensus        79 l~~N~l~g   86 (195)
                      +++|.+..
T Consensus       110 l~~~~l~~  117 (242)
T d1xwdc1         110 ISNTGIKH  117 (242)
T ss_dssp             EESCCCCS
T ss_pred             cchhhhcc
Confidence            99999873

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.92  E-value=1.8e-09  Score=79.62  Aligned_cols=79  Identities=20%  Similarity=0.298  Sum_probs=64.3

Q ss_pred             ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751            2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY   81 (195)
Q Consensus         2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~   81 (195)
                      ++.++++.+.+....  .+..+++|+.|++++|.+....  .++.+++|+.|++++|++++ ++ .+..+++|++|++++
T Consensus       131 ~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~  204 (227)
T d1h6ua2         131 LQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKN  204 (227)
T ss_dssp             CCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTT
T ss_pred             hhhhhchhhhhchhh--hhccccccccccccccccccch--hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcC
Confidence            567888888887433  3678899999999999987432  37899999999999999984 44 378899999999999


Q ss_pred             CcCcc
Q 035751           82 NRLWG   86 (195)
Q Consensus        82 N~l~g   86 (195)
                      |++++
T Consensus       205 N~lt~  209 (227)
T d1h6ua2         205 NQISD  209 (227)
T ss_dssp             SCCCB
T ss_pred             CcCCC
Confidence            99984

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.83  E-value=2e-11  Score=88.90  Aligned_cols=86  Identities=22%  Similarity=0.261  Sum_probs=71.8

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCc--hhhhcCCCccEEE
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP--KQLLSVTTLALLN   78 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~~l~~L~~L~   78 (195)
                      +|+.|+|++|.|+ .+|..+..+++|+.|++++|.++ .++ .+..+++|++|++++|.++. ++  ..+..+++|+.|+
T Consensus        71 ~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~  146 (198)
T d1m9la_          71 NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             TCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEE
T ss_pred             cccChhhcccccc-ccccccccccccccccccccccc-ccc-cccccccccccccccchhcc-ccccccccCCCccceee
Confidence            5899999999998 56666666778999999999998 443 47889999999999999984 44  4678899999999


Q ss_pred             cccCcCccCCCC
Q 035751           79 LSYNRLWGRIPR   90 (195)
Q Consensus        79 l~~N~l~g~~p~   90 (195)
                      +++|++....+.
T Consensus       147 L~~N~l~~~~~~  158 (198)
T d1m9la_         147 LAGNPLYNDYKE  158 (198)
T ss_dssp             ECSSHHHHHHCT
T ss_pred             cCCCccccCccc
Confidence            999999755444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.83  E-value=1e-08  Score=75.35  Aligned_cols=95  Identities=19%  Similarity=0.254  Sum_probs=63.8

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|+.++++++...+..  .+...+.+..+.++.+.+....  .+..+++|++|++++|.++..  ..+..+++|+.|+++
T Consensus       108 ~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls  181 (227)
T d1h6ua2         108 SIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKAD  181 (227)
T ss_dssp             TCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred             cccccccccccccccc--hhccccchhhhhchhhhhchhh--hhccccccccccccccccccc--hhhcccccceecccC
Confidence            4677888888776433  3567788888888888876332  356778888888888887632  237778888888888


Q ss_pred             cCcCccCCCCCCccCCCCcccc
Q 035751           81 YNRLWGRIPRGNQFNTFENDSY  102 (195)
Q Consensus        81 ~N~l~g~~p~~~~~~~~~~~~~  102 (195)
                      +|.+++ ++....+..+..+.+
T Consensus       182 ~n~l~~-l~~l~~l~~L~~L~L  202 (227)
T d1h6ua2         182 DNKISD-ISPLASLPNLIEVHL  202 (227)
T ss_dssp             SSCCCC-CGGGGGCTTCCEEEC
T ss_pred             CCccCC-ChhhcCCCCCCEEEC
Confidence            888874 443333334444433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.77  E-value=2.2e-08  Score=77.30  Aligned_cols=87  Identities=24%  Similarity=0.245  Sum_probs=58.7

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +++.|||++|.++ .+|+   .+++|++|+|++|+|+ .+|..+   .+|+.|++++|+++ .++..   .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~---~~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE---LPPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS---CCTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCC---CCCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence            4678999999998 5775   3568899999999998 777654   46777777777776 33321   2357777777


Q ss_pred             cCcCccCCCCCCccCCCCcc
Q 035751           81 YNRLWGRIPRGNQFNTFEND  100 (195)
Q Consensus        81 ~N~l~g~~p~~~~~~~~~~~  100 (195)
                      +|.++ .+|....+..+..+
T Consensus       107 ~n~l~-~lp~~~~l~~L~~L  125 (353)
T d1jl5a_         107 NNQLE-KLPELQNSSFLKII  125 (353)
T ss_dssp             SSCCS-SCCCCTTCTTCCEE
T ss_pred             ccccc-cccchhhhccceee
Confidence            77776 45544333344333

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=4e-09  Score=73.94  Aligned_cols=74  Identities=26%  Similarity=0.166  Sum_probs=54.1

Q ss_pred             cchhhcCCCCCcEEEccCCCCCCCC--ccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcCccCCC
Q 035751           16 IPKVLGNFKSLKVLNLSHNSLTGNI--PVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIP   89 (195)
Q Consensus        16 ~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p   89 (195)
                      ++..+..+++|++|+|++|+|+...  +..+..+++|+.|++++|.|+...+-.......|+.+++++|++++...
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence            3444457889999999999998542  3446778999999999999984333244455678999999999975443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.49  E-value=3.2e-07  Score=70.49  Aligned_cols=77  Identities=29%  Similarity=0.380  Sum_probs=63.2

Q ss_pred             CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751            1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS   80 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~   80 (195)
                      +|++|+|++|+|+ .+|+.   +.+|+.|++++|.++ .++..   .+.|++|++++|.+. .+|. +..++.|+.|+++
T Consensus        59 ~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~  128 (353)
T d1jl5a_          59 HLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVD  128 (353)
T ss_dssp             TCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECC
T ss_pred             CCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---ccccccccccccccc-cccc-hhhhccceeeccc
Confidence            4799999999999 67764   468999999999998 44432   246999999999998 5664 5789999999999


Q ss_pred             cCcCccC
Q 035751           81 YNRLWGR   87 (195)
Q Consensus        81 ~N~l~g~   87 (195)
                      +|.+...
T Consensus       129 ~~~~~~~  135 (353)
T d1jl5a_         129 NNSLKKL  135 (353)
T ss_dssp             SSCCSCC
T ss_pred             ccccccc
Confidence            9998743

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=4.2e-07  Score=66.85  Aligned_cols=78  Identities=19%  Similarity=0.164  Sum_probs=46.3

Q ss_pred             CCcEEEccCCCCCCCCccccCCCCCCcEE-eCCCCcCCCCCchhhhcCCCccEEEcccCcCccCCCCCCccCCCCccccc
Q 035751           25 SLKVLNLSHNSLTGNIPVSFDNMTALESL-DLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYI  103 (195)
Q Consensus        25 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L-~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~  103 (195)
                      .++.|++++|.++. ++......+++..+ ++++|.++...+..|..+++|+.|++++|+++ .+|.. .+..+..+...
T Consensus       154 ~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~-~~~~l~~L~~l  230 (242)
T d1xwdc1         154 ESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY-GLENLKKLRAR  230 (242)
T ss_dssp             SCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSS-SCTTCCEEESS
T ss_pred             cceeeecccccccc-cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHH-HHcCCcccccC
Confidence            56667777777773 33333344454444 56677777433445777888888888888887 55542 34444444444


Q ss_pred             CC
Q 035751          104 GN  105 (195)
Q Consensus       104 ~n  105 (195)
                      +.
T Consensus       231 ~~  232 (242)
T d1xwdc1         231 ST  232 (242)
T ss_dssp             SE
T ss_pred             cC
Confidence            33

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2.9e-08  Score=69.41  Aligned_cols=65  Identities=29%  Similarity=0.248  Sum_probs=45.4

Q ss_pred             hcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCC--CchhhhcCCCccEEEcccCcCc
Q 035751           20 LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR--IPKQLLSVTTLALLNLSYNRLW   85 (195)
Q Consensus        20 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~--~p~~~~~l~~L~~L~l~~N~l~   85 (195)
                      +..+..+..++...+... .++..+..+++|++|++++|+|+..  ++..+..+++|+.|++++|.++
T Consensus        38 l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          38 LVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             TTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             hhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            444445555555554443 4444556788999999999999854  2355678899999999999988

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2e-07  Score=73.99  Aligned_cols=83  Identities=25%  Similarity=0.274  Sum_probs=35.6

Q ss_pred             ccEEEecCCcCCC----CcchhhcCCCCCcEEEccCCCCCCC----CccccC-CCCCCcEEeCCCCcCCCC----Cchhh
Q 035751            2 FRATDLSSNRFCG----EIPKVLGNFKSLKVLNLSHNSLTGN----IPVSFD-NMTALESLDLSFNKLEGR----IPKQL   68 (195)
Q Consensus         2 L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~-~l~~L~~L~l~~N~l~~~----~p~~~   68 (195)
                      +++|+|++|.++.    .+...+..+++|++|||++|.|+..    +...+. ...+|++|++++|.++..    ++..+
T Consensus        29 l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l  108 (460)
T d1z7xw1          29 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL  108 (460)
T ss_dssp             CSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHT
T ss_pred             CCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchh
Confidence            3444555554441    1223334455555555555554310    111111 123455555555555422    22333


Q ss_pred             hcCCCccEEEcccCcC
Q 035751           69 LSVTTLALLNLSYNRL   84 (195)
Q Consensus        69 ~~l~~L~~L~l~~N~l   84 (195)
                      ..+++|+.|++++|.+
T Consensus       109 ~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1         109 RTLPTLQELHLSDNLL  124 (460)
T ss_dssp             TSCTTCCEEECCSSBC
T ss_pred             hccccccccccccccc
Confidence            4455555555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.3e-07  Score=70.46  Aligned_cols=82  Identities=24%  Similarity=0.229  Sum_probs=63.0

Q ss_pred             CccEEEecCCcCCCC-cchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCC-cCCCC-CchhhhcCCCccEE
Q 035751            1 MFRATDLSSNRFCGE-IPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFN-KLEGR-IPKQLLSVTTLALL   77 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N-~l~~~-~p~~~~~l~~L~~L   77 (195)
                      +|++||++++.++.. +...+..+++|++|+|+++.++...+..++.+++|++|+++++ .++.. +......+++|+.|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            478899999888744 3455778899999999999888777788888999999999984 56532 22234568899999


Q ss_pred             EcccC
Q 035751           78 NLSYN   82 (195)
Q Consensus        78 ~l~~N   82 (195)
                      +++++
T Consensus       127 ~ls~c  131 (284)
T d2astb2         127 NLSWC  131 (284)
T ss_dssp             ECCCC
T ss_pred             ccccc
Confidence            99874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.2e-07  Score=75.27  Aligned_cols=86  Identities=21%  Similarity=0.240  Sum_probs=64.9

Q ss_pred             CccEEEecCCcCCCCc-chhhcCCCCCcEEEccCCCCCC----CCccccCCCCCCcEEeCCCCcCCCCCchhhh-----c
Q 035751            1 MFRATDLSSNRFCGEI-PKVLGNFKSLKVLNLSHNSLTG----NIPVSFDNMTALESLDLSFNKLEGRIPKQLL-----S   70 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-----~   70 (195)
                      +|++||++.|++++.. ..-+..++++++|+|++|.++.    .++..+..+++|++|||++|.|+......+.     .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            4899999999998532 3446678999999999999872    2345567899999999999998632111222     2


Q ss_pred             CCCccEEEcccCcCcc
Q 035751           71 VTTLALLNLSYNRLWG   86 (195)
Q Consensus        71 l~~L~~L~l~~N~l~g   86 (195)
                      ..+|+.|++++|.++.
T Consensus        83 ~~~L~~L~L~~n~it~   98 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTG   98 (460)
T ss_dssp             TCCCCEEECTTSCCBG
T ss_pred             CCCCCEEECCCCCccc
Confidence            3579999999999974

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.04  E-value=7.4e-07  Score=69.06  Aligned_cols=84  Identities=20%  Similarity=0.198  Sum_probs=39.6

Q ss_pred             ccEEEecCCcCCCC----cchhhcCCCCCcEEEccCCCCCCC-----CccccCCCCCCcEEeCCCCcCCCC----Cchhh
Q 035751            2 FRATDLSSNRFCGE----IPKVLGNFKSLKVLNLSHNSLTGN-----IPVSFDNMTALESLDLSFNKLEGR----IPKQL   68 (195)
Q Consensus         2 L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~   68 (195)
                      |+.+++++|.+...    +...+...+.|+.|+|++|.++..     +...+..+++|+.|++++|.++..    +...+
T Consensus       160 L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l  239 (344)
T d2ca6a1         160 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL  239 (344)
T ss_dssp             CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred             cceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccc
Confidence            44555555555421    222233445555555555555421     122344455555555555555321    22234


Q ss_pred             hcCCCccEEEcccCcCc
Q 035751           69 LSVTTLALLNLSYNRLW   85 (195)
Q Consensus        69 ~~l~~L~~L~l~~N~l~   85 (195)
                      ..+++|+.|++++|.++
T Consensus       240 ~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         240 KSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             GGCTTCCEEECTTCCCC
T ss_pred             cccccchhhhhhcCccC
Confidence            44555555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.99  E-value=9.3e-07  Score=68.46  Aligned_cols=85  Identities=24%  Similarity=0.308  Sum_probs=63.9

Q ss_pred             CccEEEecCCcCCCC-----cchhhcCCCCCcEEEccCCCCCCC----CccccCCCCCCcEEeCCCCcCCCCCchh----
Q 035751            1 MFRATDLSSNRFCGE-----IPKVLGNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGRIPKQ----   67 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~----   67 (195)
                      +|+.|+|++|.+...     +...+..+++|+.|+|++|.++..    +...+...++|++|++++|.|+......    
T Consensus       187 ~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~  266 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA  266 (344)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred             hhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHH
Confidence            478999999998742     234467788999999999988632    3455678899999999999987542222    


Q ss_pred             hhc--CCCccEEEcccCcCc
Q 035751           68 LLS--VTTLALLNLSYNRLW   85 (195)
Q Consensus        68 ~~~--l~~L~~L~l~~N~l~   85 (195)
                      +..  ...|+.|++++|.++
T Consensus       267 l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         267 FSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHTCSSCCCCEEECCSSCCB
T ss_pred             hhhccCCCCCEEECCCCcCC
Confidence            222  467999999999986

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.4e-05  Score=60.22  Aligned_cols=82  Identities=20%  Similarity=0.167  Sum_probs=64.8

Q ss_pred             CccEEEecCC--cCCCC-cchhhcCCCCCcEEEccCC-CCCCCCccccCCCCCCcEEeCCC-CcCCCCCchhhhcCCCcc
Q 035751            1 MFRATDLSSN--RFCGE-IPKVLGNFKSLKVLNLSHN-SLTGNIPVSFDNMTALESLDLSF-NKLEGRIPKQLLSVTTLA   75 (195)
Q Consensus         1 ~L~~L~Ls~N--~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~   75 (195)
                      +|+.|+++++  .++.. +...+..+++|++|+++++ .++......+..+++|++|++++ +.++......+..+++|+
T Consensus       149 ~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~  228 (284)
T d2astb2         149 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK  228 (284)
T ss_dssp             TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCC
Confidence            4788999875  34432 3333467899999999986 57777778889999999999999 468766667788899999


Q ss_pred             EEEcccC
Q 035751           76 LLNLSYN   82 (195)
Q Consensus        76 ~L~l~~N   82 (195)
                      .|+++++
T Consensus       229 ~L~l~~~  235 (284)
T d2astb2         229 TLQVFGI  235 (284)
T ss_dssp             EEECTTS
T ss_pred             EEeeeCC
Confidence            9999876

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.80  E-value=6.1e-06  Score=57.45  Aligned_cols=85  Identities=13%  Similarity=0.214  Sum_probs=56.0

Q ss_pred             CccEEEecCC-cCCCC----cchhhcCCCCCcEEEccCCCCCC----CCccccCCCCCCcEEeCCCCcCCCCC----chh
Q 035751            1 MFRATDLSSN-RFCGE----IPKVLGNFKSLKVLNLSHNSLTG----NIPVSFDNMTALESLDLSFNKLEGRI----PKQ   67 (195)
Q Consensus         1 ~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~~~~----p~~   67 (195)
                      +|++|+|+++ .++..    +-..+...+.|+.|+|++|.++.    .+...+...+.|+.|++++|.++...    -..
T Consensus        16 ~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~a   95 (167)
T d1pgva_          16 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS   95 (167)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHH
Confidence            4778888864 45432    23346667788888888888762    22234455678888888888887432    223


Q ss_pred             hhcCCCccEEEcccCcCc
Q 035751           68 LLSVTTLALLNLSYNRLW   85 (195)
Q Consensus        68 ~~~l~~L~~L~l~~N~l~   85 (195)
                      +...++|+.|++++|.+.
T Consensus        96 L~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          96 TLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             TTTTCCCSEEECCCCSSC
T ss_pred             HHhCCcCCEEECCCCcCC
Confidence            555677888888887654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.56  E-value=3.1e-05  Score=53.73  Aligned_cols=84  Identities=14%  Similarity=0.151  Sum_probs=62.4

Q ss_pred             CccEEEecCCcCCC----CcchhhcCCCCCcEEEccCCCCCCC----CccccCCCCCCcEEeCCCCcCCCC-------Cc
Q 035751            1 MFRATDLSSNRFCG----EIPKVLGNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGR-------IP   65 (195)
Q Consensus         1 ~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~-------~p   65 (195)
                      +|++|+|++|.+..    .+...+...+.|+.|+|++|.++..    +-..+...++|++|++++|.+...       +.
T Consensus        45 ~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~  124 (167)
T d1pgva_          45 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM  124 (167)
T ss_dssp             CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred             ccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHH
Confidence            48899999999873    2334456678999999999999843    233467778999999999976632       23


Q ss_pred             hhhhcCCCccEEEcccCcC
Q 035751           66 KQLLSVTTLALLNLSYNRL   84 (195)
Q Consensus        66 ~~~~~l~~L~~L~l~~N~l   84 (195)
                      ..+...++|+.|+++.+..
T Consensus       125 ~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         125 MAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhCCCccEeeCcCCCc
Confidence            4455678899999876643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.35  E-value=0.00078  Score=46.07  Aligned_cols=65  Identities=17%  Similarity=0.153  Sum_probs=31.9

Q ss_pred             cCCCCCcEEEccC-CCCCCC----CccccCCCCCCcEEeCCCCcCCCC----CchhhhcCCCccEEEcccCcCc
Q 035751           21 GNFKSLKVLNLSH-NSLTGN----IPVSFDNMTALESLDLSFNKLEGR----IPKQLLSVTTLALLNLSYNRLW   85 (195)
Q Consensus        21 ~~l~~L~~L~Ls~-N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~   85 (195)
                      .+.+.|++|+|++ +.++..    +-..+...+.|++|++++|.++..    +-..+...++++.+++++|.++
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            3445666666655 334311    112234555666666666655432    1122334556666666665554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.19  E-value=0.00069  Score=46.37  Aligned_cols=85  Identities=16%  Similarity=0.154  Sum_probs=59.6

Q ss_pred             CccEEEecC-CcCCCC----cchhhcCCCCCcEEEccCCCCCCC----CccccCCCCCCcEEeCCCCcCCCC----Cchh
Q 035751            1 MFRATDLSS-NRFCGE----IPKVLGNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGR----IPKQ   67 (195)
Q Consensus         1 ~L~~L~Ls~-N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~   67 (195)
                      +|++|+|++ +.++..    +-..+...++|++|+|++|.++..    +-..+...+.++.+++++|.++..    +-..
T Consensus        18 ~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~   97 (166)
T d1io0a_          18 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA   97 (166)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHH
Confidence            478899987 456532    334466789999999999998733    223456678999999999988643    2245


Q ss_pred             hhcCCCccEEEc--ccCcCc
Q 035751           68 LLSVTTLALLNL--SYNRLW   85 (195)
Q Consensus        68 ~~~l~~L~~L~l--~~N~l~   85 (195)
                      +...++|+.++|  ++|.+.
T Consensus        98 l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          98 LQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             GGGCSSCCEEECCCCSSCCC
T ss_pred             HHhCccccEEeeccCCCcCc
Confidence            566788887665  456664