Citrus Sinensis ID: 035812

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520
SCSIQDSNLELFLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAGATIGELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTTDQATSQGATDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLMNQQFPELGLRAEDCHEMSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSSKNKSDYVKNVIPKKALEEIWTKMINFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEGINSTNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIGNSYPSNKTSLLRDADVYGAKYFKGNYKRLVEVKTKVDPFNFFKNEQSIPPGLVNF
ccccccccHHHHHHHHccccccccccccccEEccccccHHHHHHHHHccccccccccccccEEEEcccHHHHHHHHHHHHHcccEEEEEccccccccccccccccEEEEEccccccEEEEccccEEEEcccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHccccEEEEEEEEEEccccEEEccccccccEEEEEccccccEEEEEEEEEEEEEcccEEEEEEEEEccccccHHHHHHHHHHHHHHccccccccEEEEEEEEEccccccccEEEEEEEEEEccccccHHHHHHHccccccccccccEEccHHHHHHHHccccccccHHHHcccccccccccccccccccccccHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
ccccccccHHHHHHHHHHcccccccccccEEEccccccHHHHHHHHHHccccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEcccccccccEEEccccEEEEEcHHcccEEEEcccccEEEEccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHcccHHEEEEccccccEEEEEEEEEEEEccccEEEEEEEEccccccccccHHHHHHHHHHHHccccccEEEEEEEEEccccccccEEEEEEEEEEEcccHHHHHHHHHHHccHccccHccHHEHcHHHHHHHHccccccccHHHHHccccccHHHHccccccccccccHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccccc
SCSIQDSNLELFLKCLLhdhvepsnpiseliytrnnSSFQSVLNAYIKNrrfltpstpkplaivtpnhrshVQATIKCSNQAGLELRIrsgghdyeglsytstvpfvVLDMFNLRKIDINIADETAWVQAGATIGELYYQISNVsklhafpagvcptigagghitgggygNLMRKyglssdnvvdAQLVDVEGRILNRESMGEDLFWAirggggesFGVILAWKIKLvsvpekvtvfnvgkttdqatsqgATDVIYKWQqvapklpgelfirampkvvngsrplekTVMVSFIGMFLGQISsliplmnqqfpelglraedchemswVESTLFWDQYRIGTSIKVLLNRstdvkfssknksdyvknvipkKALEEIWTKMINFGNmwmqwnpyggrmseisesetafphragnLFKIQYCALWeeeginstnlytSKIRDFyasmapyvsnspreafhnyrdldignsypsnktsllrdadvygakyfkgNYKRLVEVKTkvdpfnffkneqsippglvnf
SCSIQDSNLELFLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAGATIGELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFnvgkttdqatsqgaTDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLMNQQFPELGLRAEDCHEMSWVESTLFWDQYRIGTSIKVLLNrstdvkfssknksdyvknvipkkalEEIWTKMINFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEGINSTNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLdignsypsnktsllrdADVYGAKYFKGNYKRLVEVKTKVdpfnffkneqsippglvnf
SCSIQDSNLELFLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAGATIGELYYQISNVSKLHAFPAGVCPTIgagghitgggygNLMRKYGLSSDNVVDAQLVDVEGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTTDQATSQGATDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLMNQQFPELGLRAEDCHEMSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSSKNKSDYVKNVIPKKALEEIWTKMINFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEGINSTNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIGNSYPSNKTSLLRDADVYGAKYFKGNYKRLVEVKTKVDPFNFFKNEQSIPPGLVNF
********LELFLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAGATIGELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTTDQATSQGATDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLMNQQFPELGLRAEDCHEMSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSSKNKSDYVKNVIPKKALEEIWTKMINFGNMWMQWNPYGGRMSEIS**ETAFPHRAGNLFKIQYCALWEEEGINSTNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIGNSYPSNKTSLLRDADVYGAKYFKGNYKRLVEVKTKVDPFNFFK************
*****DSNLELFLKCLLHDHV*PSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAGATIGELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTTDQATSQGATDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLMNQQFPELGLRAEDCHEMSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSSKNKSDYVKNVIPKKALEEIWTKMINFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEGINSTNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIGNSYPSNKTSLLRDADVYGAKYFKGNYKRLVEVKTKVDPFNFFKNEQSIPPG****
SCSIQDSNLELFLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAGATIGELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTTDQATSQGATDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLMNQQFPELGLRAEDCHEMSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSSKNKSDYVKNVIPKKALEEIWTKMINFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEGINSTNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIGNSYPSNKTSLLRDADVYGAKYFKGNYKRLVEVKTKVDPFNFFKNEQSIPPGLVNF
******SNLELFLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAGATIGELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTTDQATSQGATDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLMNQQFPELGLRAEDCHEMSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSSKNKSDYVKNVIPKKALEEIWTKMINFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEGINSTNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIGNSYPSNKTSLLRDADVYGAKYFKGNYKRLVEVKTKVDPFNFFKNEQSIPPGLVN*
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SCSIQDSNLELFLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAGATIGELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTTDQATSQGATDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLMNQQFPELGLRAEDCHEMSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSSKNKSDYVKNVIPKKALEEIWTKMINFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEGINSTNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIGNSYPSNKTSLLRDADVYGAKYFKGNYKRLVEVKTKVDPFNFFKNEQSIPPGLVNF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query520 2.2.26 [Sep-21-2011]
Q9SVG4570 Reticuline oxidase-like p no no 0.948 0.864 0.488 1e-129
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.953 0.910 0.476 1e-126
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.953 0.910 0.472 1e-125
A6P6V9544 Cannabidiolic acid syntha N/A no 0.955 0.913 0.474 1e-123
A6P6W0545 Cannabidiolic acid syntha N/A no 0.951 0.908 0.470 1e-122
A6P6W1545 Cannabidiolic acid syntha N/A no 0.951 0.908 0.466 1e-121
P93479535 Reticuline oxidase OS=Pap N/A no 0.946 0.919 0.408 6e-93
P30986538 Reticuline oxidase OS=Esc N/A no 0.953 0.921 0.403 4e-90
O06997447 Uncharacterized FAD-linke yes no 0.778 0.906 0.301 2e-27
P08159458 6-hydroxy-D-nicotine oxid N/A no 0.382 0.434 0.311 8e-16
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function desciption
 Score =  462 bits (1189), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 247/506 (48%), Positives = 343/506 (67%), Gaps = 13/506 (2%)

Query: 12  FLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSH 71
           FLKC       P + I++ ++++ N +F SVL AYI+N RF T ST KP  I+TP   SH
Sbjct: 39  FLKCFSDKTKSPQSQITDNVFSQTNPAFSSVLRAYIRNARFNTSSTLKPTIIITPRSESH 98

Query: 72  VQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAG 131
           V A + CS      L+IRSGGHDY+GLSY S  PF +LDM N+R + ++IA  +AW+ AG
Sbjct: 99  VSAAVTCSKTLNFLLKIRSGGHDYDGLSYISDKPFFILDMSNIRDVSVDIASNSAWISAG 158

Query: 132 ATIGELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDV 191
           AT+GE+YY+I   S++H FPAGVCPT+G GGH++GGGYGN++RK+GLS D V DA++VDV
Sbjct: 159 ATLGEVYYRIWEKSRVHGFPAGVCPTVGVGGHLSGGGYGNMVRKFGLSVDYVEDAKIVDV 218

Query: 192 EGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTTDQATSQGA 251
            GR+L+R++MGEDLFWAI GGGG S+GV+L +K+KLV VP  VTVF V    +Q    GA
Sbjct: 219 NGRVLDRKAMGEDLFWAITGGGGGSYGVVLGYKVKLVPVPSVVTVFRV----EQYMDSGA 274

Query: 252 TDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLMNQQF 311
            D+++KWQ V PK    LF+R + + V  +R   KTV  S + +FLG+   ++ L++++F
Sbjct: 275 VDMVHKWQSVGPKTDPNLFMRMLIQPV--TRKKVKTVRASVVALFLGRADEVVALLSKEF 332

Query: 312 PELGLRAEDCHEMSWVESTLFWDQYRIGTSI--KVLLNRSTDVKFSSKNKSDYVKNVIPK 369
           PELGL+ E+C EM+W +S L+WD     T +  KV L+R+ D     K KSDYV   IPK
Sbjct: 333 PELGLKKENCSEMTWFQSALWWDNRLNATQVDPKVFLDRNLDTSSFGKRKSDYVATAIPK 392

Query: 370 KALEEIWTKMINFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEGINS 429
           K +E ++ KMI  G + + +NPYGG+M+E++ +   FPHR   LFKIQY   W+E     
Sbjct: 393 KGIESLFKKMIELGKIGLVFNPYGGKMAEVAVNAKPFPHR-NKLFKIQYSVNWKENSAEI 451

Query: 430 TNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIG-NSYPSNKTSLLRDADVYGAKYFK 488
              Y ++ +  Y+ M  +VS +PR ++ NYRD+DIG N + +N     ++ +VYG KYF 
Sbjct: 452 EKGYLNQAKVLYSFMTGFVSKNPRSSYFNYRDVDIGVNDHGANS---YKEGEVYGRKYFG 508

Query: 489 GNYKRLVEVKTKVDPFNFFKNEQSIP 514
            N+ RLV++KT VDP NFF+NEQSIP
Sbjct: 509 ENFDRLVKIKTAVDPGNFFRNEQSIP 534

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 2EC: 1EC: .EC: -EC: .EC: -
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|P08159|HDNO_ARTOX 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxidans PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query520
224056755526 predicted protein [Populus trichocarpa] 0.959 0.948 0.650 0.0
224115592514 predicted protein [Populus trichocarpa] 0.967 0.978 0.656 0.0
255578041524 Reticuline oxidase precursor, putative [ 0.976 0.969 0.647 0.0
224061579501 predicted protein [Populus trichocarpa] 0.955 0.992 0.636 1e-180
224056761519 predicted protein [Populus trichocarpa] 0.976 0.978 0.633 1e-179
224056759519 predicted protein [Populus trichocarpa] 0.976 0.978 0.631 1e-178
224117860530 predicted protein [Populus trichocarpa] 0.975 0.956 0.625 1e-176
255564315526 Reticuline oxidase precursor, putative [ 0.959 0.948 0.619 1e-176
255564317533 Reticuline oxidase precursor, putative [ 0.957 0.934 0.617 1e-174
224115642534 predicted protein [Populus trichocarpa] 0.955 0.930 0.603 1e-171
>gi|224056755|ref|XP_002299007.1| predicted protein [Populus trichocarpa] gi|224056757|ref|XP_002299008.1| predicted protein [Populus trichocarpa] gi|222846265|gb|EEE83812.1| predicted protein [Populus trichocarpa] gi|222846266|gb|EEE83813.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/506 (65%), Positives = 400/506 (79%), Gaps = 7/506 (1%)

Query: 10  ELFLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHR 69
           E FL+CL ++ + PS PISE IYT  NSSF+SVL  YI NRRFLTP+TPKP+AIVT  H 
Sbjct: 25  EKFLQCLPNNSL-PSYPISEAIYTTANSSFESVLQTYINNRRFLTPTTPKPIAIVTALHE 83

Query: 70  SHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQ 129
           SHVQAT+ C+  +GL++RIRSGGHDYEGLSY S VPFV+LDMFNLR ID++IA+ETAWVQ
Sbjct: 84  SHVQATVICAKASGLQVRIRSGGHDYEGLSYVSEVPFVILDMFNLRSIDVDIANETAWVQ 143

Query: 130 AGATIGELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLV 189
           AGAT+GE+YY I+N S +HAFPAGVCPT+GAGGHI+GGGYG LMRKYGLS DN++DA++V
Sbjct: 144 AGATLGEIYYNIANNSNVHAFPAGVCPTVGAGGHISGGGYGTLMRKYGLSVDNIIDAKVV 203

Query: 190 DVEGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTTDQATSQ 249
           DV G IL+RE+MGEDLFWAIRGGGG SF V+L+WK+ LV VPEKVTVF V +T +    +
Sbjct: 204 DVNGNILDRETMGEDLFWAIRGGGGASFAVVLSWKMNLVRVPEKVTVFKVDRTLE----E 259

Query: 250 GATDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLMNQ 309
           GATD+ Y+WQQV+ +L  +LFIRAMP+V NGS+   KT+ +SF  +FLGQ  +L+ +MN+
Sbjct: 260 GATDIFYQWQQVSTELDKDLFIRAMPQVANGSQEGTKTISISFYALFLGQSEALLSMMNK 319

Query: 310 QFPELGLRAEDCHEMSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSSKNKSDYVKNVIPK 369
            FP+LGL+ +DC EM W+ESTLFW    IGTSI VLLNR    +   KNKSDYV  ++PK
Sbjct: 320 SFPKLGLQQKDCIEMRWIESTLFWFDLPIGTSIDVLLNRPQGAQSFYKNKSDYVNQIVPK 379

Query: 370 KALEEIWTKMINFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEGINS 429
           +ALE IW  MI    MWMQWNPYGGRMSEI ++ T FPHRAG LFK+QY   W+EEG  +
Sbjct: 380 EALERIWKMMIKADPMWMQWNPYGGRMSEIPDTATPFPHRAGYLFKLQYSINWDEEGTEA 439

Query: 430 TNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIGNSYPSNKTSLLRDADVYGAKYFKG 489
           T  Y S IR+ + +MAPYV++ PREAF NYRDLDIG S PSN+T   R A VYG KYFKG
Sbjct: 440 TERYISLIREMHDAMAPYVTSYPREAFQNYRDLDIG-SNPSNQTDFER-AKVYGLKYFKG 497

Query: 490 NYKRLVEVKTKVDPFNFFKNEQSIPP 515
           N+ RLV++K KVDP NF K+EQSIPP
Sbjct: 498 NFLRLVKIKGKVDPDNFLKHEQSIPP 523

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224115592|ref|XP_002317074.1| predicted protein [Populus trichocarpa] gi|222860139|gb|EEE97686.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255578041|ref|XP_002529891.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223530618|gb|EEF32494.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224061579|ref|XP_002300550.1| predicted protein [Populus trichocarpa] gi|222847808|gb|EEE85355.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056761|ref|XP_002299010.1| predicted protein [Populus trichocarpa] gi|222846268|gb|EEE83815.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056759|ref|XP_002299009.1| predicted protein [Populus trichocarpa] gi|222846267|gb|EEE83814.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224117860|ref|XP_002317686.1| predicted protein [Populus trichocarpa] gi|222860751|gb|EEE98298.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255564315|ref|XP_002523154.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537561|gb|EEF39185.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255564317|ref|XP_002523155.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537562|gb|EEF39186.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224115642|ref|XP_002317086.1| predicted protein [Populus trichocarpa] gi|222860151|gb|EEE97698.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query520
TAIR|locus:2121509528 AT4G20800 [Arabidopsis thalian 0.959 0.945 0.563 2e-152
TAIR|locus:2197935530 AT1G26390 [Arabidopsis thalian 0.951 0.933 0.548 6.2e-149
TAIR|locus:2198000529 AT1G26420 [Arabidopsis thalian 0.957 0.941 0.549 3.4e-148
TAIR|locus:2197900552 AT1G26410 [Arabidopsis thalian 0.957 0.902 0.537 6.6e-145
TAIR|locus:2197950535 AT1G26380 [Arabidopsis thalian 0.95 0.923 0.543 1.4e-144
TAIR|locus:2197920527 AT1G26400 [Arabidopsis thalian 0.955 0.943 0.525 3.9e-140
TAIR|locus:2204604527 AT1G30700 [Arabidopsis thalian 0.969 0.956 0.515 4.9e-140
TAIR|locus:2204624527 AT1G30720 [Arabidopsis thalian 0.951 0.939 0.515 3.2e-136
TAIR|locus:505006170527 AT1G34575 [Arabidopsis thalian 0.925 0.912 0.521 6.2e-133
TAIR|locus:2204634526 AT1G30730 [Arabidopsis thalian 0.955 0.944 0.488 3.4e-132
TAIR|locus:2121509 AT4G20800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1487 (528.5 bits), Expect = 2.0e-152, P = 2.0e-152
 Identities = 287/509 (56%), Positives = 358/509 (70%)

Query:     8 NLELFLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPN 67
             N+E FL+CL  +   P NPI+E IYT  NS+F S   +Y  N+R L P+  K +AIV   
Sbjct:    25 NIENFLRCL-RNRTNPKNPIAEAIYTHENSTFASSYVSYTNNKRCLNPNDTKLIAIVAAK 83

Query:    68 HRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAW 127
             H SHVQAT+ C+   G+++RIRSGGHDYEGLS+TS+VPFV+LDM +LR I I++  + AW
Sbjct:    84 HESHVQATVVCAKSNGIQIRIRSGGHDYEGLSFTSSVPFVILDMHDLRSITIDVFRKQAW 143

Query:   128 VQAGATIGELYYQISNVSKLHAFPAGVCPTIXXXXXXXXXXXXNLMRKYGLSSDNVVDAQ 187
             V AGAT+GELY +I+  SK  AF  GVCPT+            NL+RKYG+S D+VVDA+
Sbjct:   144 VDAGATMGELYTKIAAASKTLAFAGGVCPTLGAGGHISGGGYGNLIRKYGISVDHVVDAR 203

Query:   188 LVDVEGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTTDQAT 247
             +VDV G IL   ++G DL WAIRGGGG SFGVIL+WKI LV VP+ VTVF V KT +Q  
Sbjct:   204 IVDVNGNILTGATLGRDLLWAIRGGGGASFGVILSWKINLVDVPKTVTVFKVNKTLEQ-- 261

Query:   248 SQGATDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLM 307
               G TDV+YKWQ V+ KLP +LF+RAMPK VNG  P EKT+ V F   FLG    L+ +M
Sbjct:   262 --GVTDVLYKWQLVSSKLPQDLFLRAMPKPVNGVVPSEKTIAVVFYAQFLGSARRLMAIM 319

Query:   308 NQQFPELGLRAEDCHEMSWVESTLFWDQYRIGTSIKVLLNR-STDVKFSSKNKSDYVKNV 366
             N+  PELGL+ EDC+EMSW+ +T FW  Y +GTS  VLL+R S       K+KSDYVK  
Sbjct:   320 NKNLPELGLKREDCYEMSWINTTTFWQNYPVGTSTSVLLDRPSGPAGAFYKSKSDYVKKP 379

Query:   367 IPKKALEEIWTKMINFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEG 426
             IPK+ +E+IW  M+ F NMWMQWNPYGG M +I    TAFPHR GNLFKIQY ALW +  
Sbjct:   380 IPKEEMEKIWKAMLKFNNMWMQWNPYGGVMDKIPADATAFPHRKGNLFKIQYFALWTDAN 439

Query:   427 INSTNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIGNSYPSNKTSLLRDADVYGAKY 486
                 NL    +RD Y  M PYVS++PREAF NYRD+D+G++ PS +T+L  +A +YG+KY
Sbjct:   440 ATYANL--GLMRDIYHEMEPYVSSNPREAFLNYRDIDVGSN-PSGETNL-EEAKIYGSKY 495

Query:   487 FKGNYKRLVEVKTKVDPFNFFKNEQSIPP 515
             F GN+KRL+EVK K DP NFF+ EQSIPP
Sbjct:   496 FLGNFKRLMEVKAKYDPENFFRFEQSIPP 524
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2197935 AT1G26390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198000 AT1G26420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197900 AT1G26410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197950 AT1G26380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197920 AT1G26400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204604 AT1G30700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204624 AT1G30720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006170 AT1G34575 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204634 AT1G30730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.21.3LOW CONFIDENCE prediction!
3rd Layer1.21.3.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query520
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 4e-28
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 2e-23
pfam0803145 pfam08031, BBE, Berberine and berberine like 9e-16
PRK11230499 PRK11230, PRK11230, glycolate oxidase subunit GlcD 1e-04
TIGR00387413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 4e-04
PLN02805555 PLN02805, PLN02805, D-lactate dehydrogenase [cytoc 4e-04
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score =  108 bits (273), Expect = 4e-28
 Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 3/139 (2%)

Query: 60  PLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKI-D 118
           P A+V P     V A ++ +N+ GL + +R GG    G +  +    VVLD+  L  I +
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVLTGG--VVLDLSRLNGILE 58

Query: 119 INIADETAWVQAGATIGELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGL 178
           I+  D TA V+AG T+G+L   ++    L     G       GG I   G G    +YGL
Sbjct: 59  IDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERYGL 118

Query: 179 SSDNVVDAQLVDVEGRILN 197
           + DNV+  ++V  +G ++ 
Sbjct: 119 TRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 520
PLN02441525 cytokinin dehydrogenase 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 99.97
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.97
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.97
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.97
KOG1231505 consensus Proteins containing the FAD binding doma 99.96
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.96
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.95
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.92
PRK11183564 D-lactate dehydrogenase; Provisional 99.9
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.87
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.87
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.87
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.86
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.86
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.85
KOG1232511 consensus Proteins containing the FAD binding doma 99.85
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.84
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.82
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.74
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.68
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.68
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.67
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.64
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.63
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.49
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.49
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.2
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 94.9
PRK09799258 putative oxidoreductase; Provisional 94.68
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 93.38
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 91.78
PLN00107257 FAD-dependent oxidoreductase; Provisional 90.82
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 90.19
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 90.0
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 89.79
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 87.54
PLN02906 1319 xanthine dehydrogenase 80.64
PLN00192 1344 aldehyde oxidase 80.1
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=7.7e-38  Score=329.95  Aligned_cols=203  Identities=21%  Similarity=0.271  Sum_probs=174.2

Q ss_pred             cceEEcCCCCchHHHHHhhhcCcccCCCCCCCccEEEecCCHHHHHHHHHHHH--HCCCeEEEEeCccCCCCCcccCCCC
Q 035812           28 SELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSHVQATIKCSN--QAGLELRIRSGGHDYEGLSYTSTVP  105 (520)
Q Consensus        28 ~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~--~~~~~~~~~ggGh~~~g~~~~~~~~  105 (520)
                      .+.+.+ ++..++.+.      ..|.......|.+|++|+|++||+++|++|+  +++++|++||+|||+.|.+...+  
T Consensus        40 ~~~v~~-d~~~~~~~s------~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~--  110 (525)
T PLN02441         40 DGHLSF-DPVSTASAS------KDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG--  110 (525)
T ss_pred             CceEEe-CHHHHHHHh------cCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--
Confidence            344443 455565543      3577777789999999999999999999997  67999999999999999887654  


Q ss_pred             eEEEEeecccc------E-EEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceec-CCCCCCccchhhhhcCCCCCCccccC
Q 035812          106 FVVLDMFNLRK------I-DINIADETAWVQAGATIGELYYQISNVSKLHAFP-AGVCPTIGAGGHITGGGYGNLMRKYG  177 (520)
Q Consensus       106 gvvIdl~~~~~------i-~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~-~g~~~~vgigG~~~ggg~g~~~~~~G  177 (520)
                      |++|||++||+      + ++|.+..+|+|++|++|.++++++.++|  ++.+ .+.+..++|||.+.+||+|..+.+||
T Consensus       111 GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG  188 (525)
T PLN02441        111 GVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHG  188 (525)
T ss_pred             eEEEECCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccC
Confidence            99999999999      3 7888899999999999999999999987  3332 35666789999999999999999999


Q ss_pred             ccccceeEEEEEeecccEEe-eccCCchhhhhhhccCCCCeEEEEEEEEEEEecCceEEEEEEeec
Q 035812          178 LSSDNVVDAQLVDVEGRILN-RESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKT  242 (520)
Q Consensus       178 ~~~d~v~~~~vV~~~G~~~~-~~~~~~dl~~a~rG~g~g~fGivt~~~~~~~p~~~~~~~~~~~~~  242 (520)
                      ..+|+|++++||+++|++++ ++.+|+|||||+|||+ |+|||||++|||++|.|+.+....+.+.
T Consensus       189 ~~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~  253 (525)
T PLN02441        189 PQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYS  253 (525)
T ss_pred             cHHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcC
Confidence            99999999999999999998 6678999999999998 8999999999999999987655555553

>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query520
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-126
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-124
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 1e-120
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 3e-91
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 3e-91
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 3e-91
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 4e-91
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 3e-90
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 5e-90
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 5e-90
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 4e-19
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 5e-18
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 3e-16
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 5e-15
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 8e-14
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 6e-13
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 2e-11
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 2e-06
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 1e-05
3pm9_A476 Crystal Structure Of A Putative Dehydrogenase (Rpa1 1e-04
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  449 bits (1156), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/518 (45%), Positives = 335/518 (64%), Gaps = 22/518 (4%)
Query: 10  ELFLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHR 69
           E FLKC    H+  +    +L+YT+++  + S+LN+ I+N RF++ +TPKPL IVTP++ 
Sbjct: 5   ENFLKCF-SKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNN 63
Query: 70  SHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQ 129
           SH+QATI CS + GL++R RSGGHD EG+SY S VPFVV+D+ N+  I I++  +TAWV+
Sbjct: 64  SHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVE 123
Query: 130 AGATIGELYYQISNVSKLHAFPAGVCPTIXXXXXXXXXXXXNLMRKYGLSSDNVVDAQLV 189
           AGAT+GE+YY I+  ++  +FP G CPT+             LMR YGL++DN++DA LV
Sbjct: 124 AGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLV 183
Query: 190 DVEGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTTDQATSQ 249
           +V+G++L+R+SMGEDLFWAIRGGGGE+FG+I AWKIKLV+VP K T+F+V K  +     
Sbjct: 184 NVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNME---IH 240
Query: 250 GATDVIYKWQQVAPKLPGELFIRA---MPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPL 306
           G   +  KWQ +A K   +L +        + +     + TV   F  +F G + SL+ L
Sbjct: 241 GLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDL 300
Query: 307 MNQQFPELGLRAEDCHEMSWVESTLFWD---QYRIGTSIK-VLLNRSTDVKFSSKNKSDY 362
           MN+ FPELG++  DC E SW+++T+F+     +      K +LL+RS   K +   K DY
Sbjct: 301 MNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDY 360
Query: 363 VKNVIPKKALEEIWTKMI--NFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCA 420
           VK  IP+ A+ +I  K+   + G       PYGG M EISES   FPHRAG ++++ Y A
Sbjct: 361 VKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTA 420
Query: 421 LWEEEGINSTNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIG---NSYPSNKTSLLR 477
            WE++  N  ++  + +R  Y    PYVS +PR A+ NYRDLD+G   ++ P+N T    
Sbjct: 421 SWEKQEDNEKHI--NWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQ--- 475
Query: 478 DADVYGAKYFKGNYKRLVEVKTKVDPFNFFKNEQSIPP 515
            A ++G KYF  N+ RLV+VKTKVDP NFF+NEQSIPP
Sbjct: 476 -ARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPP 512
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution Length = 476 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query520
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 0.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 0.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-172
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-170
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-167
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-167
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-165
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-165
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-115
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 6e-41
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 7e-37
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 4e-16
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 6e-16
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 5e-13
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 5e-12
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 4e-11
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 2e-05
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 2e-05
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  580 bits (1496), Expect = 0.0
 Identities = 241/518 (46%), Positives = 344/518 (66%), Gaps = 16/518 (3%)

Query: 7   SNLELFLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTP 66
           +  E FLKC    H+  +    +L+YT+++  + S+LN+ I+N RF++ +TPKPL IVTP
Sbjct: 2   NPRENFLKCF-SKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTP 60

Query: 67  NHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETA 126
           ++ SH+QATI CS + GL++R RSGGHD EG+SY S VPFVV+D+ N+  I I++  +TA
Sbjct: 61  SNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTA 120

Query: 127 WVQAGATIGELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDA 186
           WV+AGAT+GE+YY I+  ++  +FP G CPT+G GGH +GGGYG LMR YGL++DN++DA
Sbjct: 121 WVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDA 180

Query: 187 QLVDVEGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTTDQA 246
            LV+V+G++L+R+SMGEDLFWAIRGGGGE+FG+I AWKIKLV+VP K T+F+V K  +  
Sbjct: 181 HLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEI- 239

Query: 247 TSQGATDVIYKWQQVAPKLPGELFIRAM---PKVVNGSRPLEKTVMVSFIGMFLGQISSL 303
              G   +  KWQ +A K   +L +        + +     + TV   F  +F G + SL
Sbjct: 240 --HGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSL 297

Query: 304 IPLMNQQFPELGLRAEDCHEMSWVESTLFW----DQYRIGTSIKVLLNRSTDVKFSSKNK 359
           + LMN+ FPELG++  DC E SW+++T+F+    +        ++LL+RS   K +   K
Sbjct: 298 VDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIK 357

Query: 360 SDYVKNVIPKKALEEIWTKMI--NFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQ 417
            DYVK  IP+ A+ +I  K+   + G       PYGG M EISES   FPHRAG ++++ 
Sbjct: 358 LDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELW 417

Query: 418 YCALWEEEGINSTNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIGNSYPSNKTSLLR 477
           Y A WE++  N  ++  + +R  Y    PYVS +PR A+ NYRDLD+G +  ++  +   
Sbjct: 418 YTASWEKQEDNEKHI--NWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNN-YT 474

Query: 478 DADVYGAKYFKGNYKRLVEVKTKVDPFNFFKNEQSIPP 515
            A ++G KYF  N+ RLV+VKTKVDP NFF+NEQSIPP
Sbjct: 475 QARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPP 512
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query520
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 99.98
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.98
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 99.97
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.97
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.97
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.96
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.96
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.96
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.92
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.92
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.91
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.91
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.88
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.8
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.06
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.44
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 96.85
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 96.05
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 93.11
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 91.71
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 85.99
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 80.31
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=4.4e-91  Score=742.74  Aligned_cols=502  Identities=48%  Similarity=0.854  Sum_probs=425.5

Q ss_pred             chhHHHHhhccCCCCCCCCCcceEEcCCCCchHHHHHhhhcCcccCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCeEE
Q 035812            8 NLELFLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSHVQATIKCSNQAGLELR   87 (520)
Q Consensus         8 ~~~~~~~~l~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~   87 (520)
                      +.++|.+||+.. ++++.+|++.|++|+|+.|++++.+|++|.||+.....+|.+||+|++++||+++|++|+++++||+
T Consensus         3 ~~~~f~~c~~~~-~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~   81 (518)
T 3vte_A            3 PRENFLKCFSKH-IPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIR   81 (518)
T ss_dssp             HHHHHHHHHHHH-CCC----CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEE
T ss_pred             hhHHHHHHHHhc-CCccCCCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEE
Confidence            467999999998 7788899999999999999999888999999999889999999999999999999999999999999


Q ss_pred             EEeCccCCCCCcccCCCCeEEEEeeccccEEEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCCccchhhhhcC
Q 035812           88 IRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAGATIGELYYQISNVSKLHAFPAGVCPTIGAGGHITGG  167 (520)
Q Consensus        88 ~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~gg  167 (520)
                      |||||||+.|.+.....++++|||++||+|++|+++++++||||+++++|+++|.++|+++.+++|.|++|||||+++||
T Consensus        82 vrggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~gG  161 (518)
T 3vte_A           82 TRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGG  161 (518)
T ss_dssp             EESSCCCTTCTTTCCSSSEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHTC
T ss_pred             EECCCcCCCCCccCCCCCeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCCC
Confidence            99999999987743222499999999999999999999999999999999999999887889999999999999999999


Q ss_pred             CCCCCccccCccccceeEEEEEeecccEEeeccCCchhhhhhhccCCCCeEEEEEEEEEEEecCceEEEEEEeecccccc
Q 035812          168 GYGNLMRKYGLSSDNVVDAQLVDVEGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTTDQAT  247 (520)
Q Consensus       168 g~g~~~~~~G~~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rG~g~g~fGivt~~~~~~~p~~~~~~~~~~~~~~~~~~  247 (520)
                      |+|+++++||+++|+|++++||++||++++.+.+++|||||+||||+|+|||||+++||++|.|+.+..|.+.+.++   
T Consensus       162 g~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~---  238 (518)
T 3vte_A          162 GYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNME---  238 (518)
T ss_dssp             CCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCC---
T ss_pred             CCccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCC---
Confidence            99999999999999999999999999999754468999999999855899999999999999998888888877652   


Q ss_pred             cchHHHHHHHHHHHccCCCCCceEEEEeeeecCC---CCCcceEEEEEEEEEeCCcccHHHHHhhhCcccCCCcCcceec
Q 035812          248 SQGATDVIYKWQQVAPKLPGELFIRAMPKVVNGS---RPLEKTVMVSFIGMFLGQISSLIPLMNQQFPELGLRAEDCHEM  324 (520)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~G~~~~~~~~l~~~~~~l~~~~~~~~~~  324 (520)
                      .+++.+++.+|+++++.+|+++++.+.+...++.   ..+...+.+.+.++|+|+.+++.+.|.+.|++++....++.++
T Consensus       239 ~~~~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~  318 (518)
T 3vte_A          239 IHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEF  318 (518)
T ss_dssp             HHHHHHHHHHHHHHGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeec
Confidence            2457889999999999999999998887653211   1111234677889999999999988888788888776778899


Q ss_pred             ChHHHHHhhccccCC-Cc---hhhccCCCCCCCCcceeccccccCCCCHHHHHHHHHHHHhc--CceEEEEeeCCCcCCC
Q 035812          325 SWVESTLFWDQYRIG-TS---IKVLLNRSTDVKFSSKNKSDYVKNVIPKKALEEIWTKMINF--GNMWMQWNPYGGRMSE  398 (520)
Q Consensus       325 ~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~--~~~~i~~~~~GGav~~  398 (520)
                      +|++.+.++..++.+ .+   ++.+.++......+||.||.|+.+++++++|+.+++.+.+.  +.+.+.++++||+|++
T Consensus       319 ~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~  398 (518)
T 3vte_A          319 SWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEE  398 (518)
T ss_dssp             CHHHHHHHTSSSCCC-----CGGGGGCTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGT
T ss_pred             chhhhhhhhhcCCccCCccchhhhhccCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccC
Confidence            999988887755433 22   34444543334457888999998889999999999988763  3578899999999999


Q ss_pred             CCCCCCCCcccCCCeEEEEEEeeccccCccchhHHHHHHHHHHHhcccCccCCCCCcccCCCCCccC-CCCCCCCCcccc
Q 035812          399 ISESETAFPHRAGNLFKIQYCALWEEEGINSTNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIG-NSYPSNKTSLLR  477 (520)
Q Consensus       399 v~~~~tAf~~Rd~~~~~i~~~~~W~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~g~Y~Ny~d~~l~-~q~~~~~~~~~~  477 (520)
                      +++++|||+||++..|.+++.+.|.++  +.++++++|++++++.|.||.+..++++|+||.|.+++ . ++.++++ |+
T Consensus       399 v~~~~TAf~hR~~~~~~~~~~~~w~~~--~~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~-~~~~~~~-~~  474 (518)
T 3vte_A          399 ISESAIPFPHRAGIMYELWYTASWEKQ--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKT-NHASPNN-YT  474 (518)
T ss_dssp             SCTTSSSCCCCTTCCEEEEEEEEECCT--TTHHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCC-CTTSCCC-HH
T ss_pred             CCCCCCcccccCcceEEEEEEEecCCc--chhHHHHHHHHHHHHHhccccCCCCccccccCCCcccccc-ccccccc-hh
Confidence            999999999999558999999999765  45678999999999999999755567899999998876 2 1112222 33


Q ss_pred             ccchhhhccccccHHHHHHHHhhcCCCCCCCCCCCCCCCC
Q 035812          478 DADVYGAKYFKGNYKRLVEVKTKVDPFNFFKNEQSIPPGL  517 (520)
Q Consensus       478 ~~~~~~~~y~g~n~~RL~~iK~kYDP~nvF~~~qsI~p~~  517 (520)
                      .++.|+++|||+||+||++||+||||+|||+++|||+|..
T Consensus       475 ~~~~w~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~  514 (518)
T 3vte_A          475 QARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP  514 (518)
T ss_dssp             HHHHHHHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCC
T ss_pred             hhhhHHHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCC
Confidence            4556999999999999999999999999999999999874
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 520
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 4e-18
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 7e-14
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 5e-05
d1f0xa2265 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Esche 8e-05
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 80.7 bits (198), Expect = 4e-18
 Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 10/178 (5%)

Query: 59  KPLAIVTPNHRSHVQATIKCSNQA---GLELRIRSGGHDYEGLSYTSTVPFVVLDMFN-- 113
            P A++ P+    + A +  +N        +  R  GH   G ++      V +      
Sbjct: 29  LPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDA 88

Query: 114 --LRKIDINIADETAWVQAGATIGELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGN 171
               +I+++               ++                    +  GG ++  G   
Sbjct: 89  AAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSW-TDYLYLTVGGTLSNAGISG 147

Query: 172 LMRKYGLSSDNVVDAQLVDVEGRILN-RESMGEDLFWAIRGGGGESFGVILAWKIKLV 228
              ++G    NV++  ++   G ++   + +  DLF A+ GG G  FGVI   +I + 
Sbjct: 148 QAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVE 204
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 265 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query520
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.96
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.96
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.86
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.84
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.83
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 93.48
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 93.06
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 93.05
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 92.72
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 92.2
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 92.05
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=1.4e-37  Score=292.26  Aligned_cols=192  Identities=18%  Similarity=0.258  Sum_probs=166.3

Q ss_pred             CcceEEcCCCCchHHHHHhhhcCcccCCCCCCCccEEEecCCHHHHHHHHHHHHHC---CCeEEEEeCccCCCCCcccCC
Q 035812           27 ISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSHVQATIKCSNQA---GLELRIRSGGHDYEGLSYTST  103 (520)
Q Consensus        27 ~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~---~~~~~~~ggGh~~~g~~~~~~  103 (520)
                      |.++|.+ +.....      .+...|.......|.+|++|+|++||+++|++|+++   ++|+++||+||++.|.+...+
T Consensus         4 ~~g~v~t-d~~~~~------~~~~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~~   76 (206)
T d1w1oa2           4 LDGKLRT-DSNATA------AASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPG   76 (206)
T ss_dssp             TTTCEEC-SHHHHH------HTSCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCTT
T ss_pred             CCcEEEc-CHHHhh------hhEECcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccCC
Confidence            4677776 222222      234456665677999999999999999999999997   689999999999998877654


Q ss_pred             CCeEEEEeeccccE------EEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceec-CCCCCCccchhhhhcCCCCCCcccc
Q 035812          104 VPFVVLDMFNLRKI------DINIADETAWVQAGATIGELYYQISNVSKLHAFP-AGVCPTIGAGGHITGGGYGNLMRKY  176 (520)
Q Consensus       104 ~~gvvIdl~~~~~i------~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~-~g~~~~vgigG~~~ggg~g~~~~~~  176 (520)
                        +|+|||++||+|      ++|++..+++||||+++.||.++|.++|  +.++ .+....++|||++++||+|..+++|
T Consensus        77 --~ividl~~l~~i~~~~~~~id~~~~~v~v~aG~~~~~l~~~l~~~G--l~~~~~~~~~~~tvGG~i~~~g~g~~s~~~  152 (206)
T d1w1oa2          77 --GVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARG--VAPRSWTDYLYLTVGGTLSNAGISGQAFRH  152 (206)
T ss_dssp             --SEEEEGGGGGCSSSSCSEEECTTSSEEEEETTCBHHHHHHHHHTTT--EEESCCCSSCCSBHHHHHTTCCCSTTHHHH
T ss_pred             --CEeeeccccceeeeceeEEEecCCCEEEEEcceehhhhhhhhhccc--cccccCCccCceEEeeeeccccceeccccc
Confidence              899999999985      6899999999999999999999999987  4444 3556778899999999999999999


Q ss_pred             CccccceeEEEEEeecccEEe-eccCCchhhhhhhccCCCCeEEEEEEEEEEEec
Q 035812          177 GLSSDNVVDAQLVDVEGRILN-RESMGEDLFWAIRGGGGESFGVILAWKIKLVSV  230 (520)
Q Consensus       177 G~~~d~v~~~~vV~~~G~~~~-~~~~~~dl~~a~rG~g~g~fGivt~~~~~~~p~  230 (520)
                      |..+|+|+++|||++||++++ ++.+|+||||++||++ |+|||||++|||++|+
T Consensus       153 G~~~d~v~~~evV~~~G~~~~~s~~~~~dl~~a~~g~~-G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         153 GPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGL-GQFGVITRARIAVEPA  206 (206)
T ss_dssp             CCGGGSEEEEEEEETTSCEEEEESSSSHHHHHHHTTCT-TCSEEEEEEEEEEEEC
T ss_pred             cceeeeeeEEEEEcCCCcEEEECCCCCHHHHHHHhhCC-CccEeEEEEEEEEEcC
Confidence            999999999999999999997 6677999999999998 8999999999999985
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure