Citrus Sinensis ID: 035817

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
MNFHHDYPLPAYKEEQFEKYFNVETEWMADEGYAESKEVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPEFLGKWNLDKDLMLKMELQILRGLKWQMRAVTPICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRKYVEEEDLETCLDETYEKCIEKKILLLRDVWFVEKPKLEIGAAEIAKAGETSSSGSHRSGKEPIQEQNQDEAEGDIDQEMNFELKWMMWSSDDPEDLTINSPDFRTLPPAPDDPNDGTVEARNYFDLCAPCKSCIIL
ccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccHHHHHHHHHHHHHccccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHccccHHHHHHHHHHHHHHHccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEccccccccccccccccccccccccccHHHHcccccccEEEEEEEcccccccccccccccccccccccccccEEHHHccccccccccEEEc
mnfhhdyplpaykeeQFEKYFNVETEwmadegyaeskEVTLRKVAMHVILRSAFWVLLdsfpvqnsksdkldafIPYLAMNIFDRfisrhqlptvldHVRDDIVLAANSCLTLAWkmrdnsfsvpeflgkwnldkDLMLKMELQILRGLKWQMRAVTPICLVRFFVemipigkgierRTLNEIIIQTqdnisftrfrpsVIAASAVLTACRLLYDDIYEENKKILLSRKYVEEEDLETCLDETYEKCIEKKILLLRDvwfvekpkleiGAAEIAkagetsssgshrsgkepiqeqnqdeaegdIDQEMNFELKWMmwssddpedltinspdfrtlppapddpndgtvearnyfdlcapcksciil
mnfhhdyplpaykeeQFEKYFNVETEWMADEGYAESKEVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPEFLGKWNLDKDLMLKMELQILRGLKWQMRAVTPICLVRFFVEMIPIgkgierrtlNEIIIQTqdnisftrfrPSVIAASAVLTACRLLYDDIYEENKKillsrkyveeeDLETCLDETYEKCIEKKILLLRDVWFVEKPKLEIGAAEIAkagetsssgshrsgkepiqeqnqdeaeGDIDQEMNFELKWMMWSSDDPEDLTINSPDFRTLPPAPDDPNDGTVEARNYFDLCAPCKSCIIL
MNFHHDYPLPAYKEEQFEKYFNVETEWMADEGYAESKEVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPEFLGKWNLDKDLMLKMELQILRGLKWQMRAVTPICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRKYVeeedletcldetyeKCIEKKILLLRDVWFVEKPKLeigaaeiakageTSSSGSHRSGKEPIQEQNQDEAEGDIDQEMNFELKWMMWSSDDPEDLTINSPDFRTLPPAPDDPNDGTVEARNYFDLCAPCKSCIIL
********LPAYKEEQFEKYFNVETEWMADEGYAESKEVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPEFLGKWNLDKDLMLKMELQILRGLKWQMRAVTPICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRKYVEEEDLETCLDETYEKCIEKKILLLRDVWFVEKPKLEIGAA**************************************FELKWMMW******************************EARNYFDLCAPCKSCII*
*NFHHDYPLPAYKEEQFEKYFNVETEWMADEGYAESKEVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPEFLGKWNLDKDLMLKMELQILRGLKWQMRAVTPICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRKYVEEEDLETCLDETYE********************************************************************WMMWSSDDPEDLTINSPDFRT***********TVEARNYFDLCAPCKSCIIL
MNFHHDYPLPAYKEEQFEKYFNVETEWMADEGYAESKEVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPEFLGKWNLDKDLMLKMELQILRGLKWQMRAVTPICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRKYVEEEDLETCLDETYEKCIEKKILLLRDVWFVEKPKLEIGAAEIA**************************EGDIDQEMNFELKWMMWSSDDPEDLTINSPDFRTLPPAPDDPNDGTVEARNYFDLCAPCKSCIIL
****HDYPLPAYKEEQFEKYFNVETEWMADEGYAESKEVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPEFLGKWNLDKDLMLKMELQILRGLKWQMRAVTPICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRKYVEEEDLETCLDETYEKCIEK**************KLEIGAAEI**A******************************EMNFELKWMMWSSDDPEDLTINSPDFRTLPPAPDDPNDGTVEARNYFDLCAPCKSCIIL
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MNFHHDYPLPAYKEEQFEKYFNVETEWMADEGYAESKEVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPEFLGKWNLDKDLMLKMELQILRGLKWQMRAVTPICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRKYVEEEDLETCLDETYEKCIEKKILLLRDVWFVEKPKLEIGAAEIAKAGETSSSGSHRSGKEPIQEQNQDEAEGDIDQEMNFELKWMMWSSDDPEDLTINSPDFRTLPPAPDDPNDGTVEARNYFDLCAPCKSCIIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query365 2.2.26 [Sep-21-2011]
Q9ZR04302 Putative cyclin-D6-1 OS=A yes no 0.367 0.443 0.340 3e-13
Q8LGA1308 Cyclin-D4-1 OS=Arabidopsi no no 0.336 0.399 0.321 2e-11
Q0WQN9298 Cyclin-D4-2 OS=Arabidopsi no no 0.358 0.439 0.333 4e-11
Q10K98405 Putative cyclin-D2-3 OS=O yes no 0.350 0.316 0.317 1e-10
Q4KYM5383 Cyclin-D4-2 OS=Oryza sati yes no 0.339 0.323 0.309 2e-10
Q0J233308 Cyclin-D2-1 OS=Oryza sati no no 0.353 0.418 0.309 2e-09
Q8H339354 Cyclin-D1-2 OS=Oryza sati no no 0.347 0.358 0.323 2e-09
Q69QB8342 Cyclin-D3-1 OS=Oryza sati no no 0.583 0.622 0.269 5e-09
P42751339 Cyclin-D1-1 OS=Arabidopsi no no 0.345 0.371 0.342 5e-09
Q6YXH8356 Cyclin-D4-1 OS=Oryza sati no no 0.326 0.334 0.338 6e-09
>sp|Q9ZR04|CCD61_ARATH Putative cyclin-D6-1 OS=Arabidopsis thaliana GN=CYCD6-1 PE=3 SV=1 Back     alignment and function desciption
 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 13/147 (8%)

Query: 72  DAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPEFL--G 129
           D  + YLA+N  DRF+S   +P     +   I L   SC++L+ KMR    SV +    G
Sbjct: 74  DPSLTYLAVNYLDRFLSSEDMPQSKPWILKLISL---SCVSLSAKMRKPDMSVSDLPVEG 130

Query: 130 KWNLDKDLMLKMELQILRGLKWQMRAVTPICLVRFFVEMIPIG-------KGIERRTLNE 182
           ++  D  ++ +ME  IL  LKW+MR+VTP   + FF+ +  +        K   +   ++
Sbjct: 131 EF-FDAQMIERMENVILGALKWRMRSVTPFSFLAFFISLFELKEEDPLLLKHSLKSQTSD 189

Query: 183 IIIQTQDNISFTRFRPSVIAASAVLTA 209
           +    Q +ISF  F+PSVIA +A+L A
Sbjct: 190 LTFSLQHDISFLEFKPSVIAGAALLFA 216

Arabidopsis thaliana (taxid: 3702)
>sp|Q8LGA1|CCD41_ARATH Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2 Back     alignment and function description
>sp|Q0WQN9|CCD42_ARATH Cyclin-D4-2 OS=Arabidopsis thaliana GN=CYCD4-2 PE=1 SV=2 Back     alignment and function description
>sp|Q10K98|CCD23_ORYSJ Putative cyclin-D2-3 OS=Oryza sativa subsp. japonica GN=CYCD2-3 PE=3 SV=1 Back     alignment and function description
>sp|Q4KYM5|CCD42_ORYSJ Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2 Back     alignment and function description
>sp|Q0J233|CCD21_ORYSJ Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2 Back     alignment and function description
>sp|Q8H339|CCD12_ORYSJ Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYCD1-2 PE=3 SV=2 Back     alignment and function description
>sp|Q69QB8|CCD31_ORYSJ Cyclin-D3-1 OS=Oryza sativa subsp. japonica GN=CYCD3-1 PE=2 SV=2 Back     alignment and function description
>sp|P42751|CCD11_ARATH Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3 Back     alignment and function description
>sp|Q6YXH8|CCD41_ORYSJ Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
357452443423 Cyclin-D1-1 [Medicago truncatula] gi|355 0.542 0.468 0.378 2e-30
224078830305 predicted protein [Populus trichocarpa] 0.539 0.645 0.350 2e-23
296081259315 unnamed protein product [Vitis vinifera] 0.476 0.552 0.335 8e-22
225447693294 PREDICTED: putative cyclin-D6-1 [Vitis v 0.476 0.591 0.335 8e-22
224114109309 predicted protein [Populus trichocarpa] 0.638 0.754 0.324 1e-20
224146705324 predicted protein [Populus trichocarpa] 0.630 0.709 0.291 3e-20
356546684272 PREDICTED: putative cyclin-D6-1-like [Gl 0.627 0.841 0.313 7e-20
297745660407 unnamed protein product [Vitis vinifera] 0.589 0.528 0.315 1e-19
359495729327 PREDICTED: putative cyclin-D6-1-like, pa 0.589 0.657 0.315 1e-19
359359238324 D6-type cyclin [Populus x canadensis] 0.630 0.709 0.284 2e-19
>gi|357452443|ref|XP_003596498.1| Cyclin-D1-1 [Medicago truncatula] gi|355485546|gb|AES66749.1| Cyclin-D1-1 [Medicago truncatula] Back     alignment and taxonomy information
 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/230 (37%), Positives = 127/230 (55%), Gaps = 32/230 (13%)

Query: 6   DYPLPAYKE-EQFEKYFNVETEWMA-DEGYAESKEVTLRKVAMHVILRSAFWVLLDSFPV 63
           ++P+P  KE E  + YFNVE+E++A  + +    ++  R +A+ +I +            
Sbjct: 7   EFPIPTRKELEIIKNYFNVESEFIAATDTFTTPHDILFRNLAVSIIAKL----------- 55

Query: 64  QNSKSDKLDAFIPYLAMNIFDRFISRHQLP-------TVLDHVRDDIVLAANSCLTLAWK 116
             S+SD  D+FIPYLAMN FDRF+S+H+L        T  + VR    L A SCLT++ K
Sbjct: 56  --SRSDDPDSFIPYLAMNYFDRFLSQHKLNLEDVEGRTETERVR----LIAVSCLTISSK 109

Query: 117 MRDNSFSVPEFLGKWNLDKD------LMLKMELQILRGLKWQMRAVTPICLVRFFVEMIP 170
           MR NSFSV  FL     D +      ++++MEL IL+ L+W MR+VT  C +  +     
Sbjct: 110 MRTNSFSVDRFLENLYRDMNVRITPPMVMRMELLILQELQWAMRSVTAFCFLNHYYPYFK 169

Query: 171 IGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEE 220
              G +RR++NEII+Q Q   +F  + PS IA SA L A +  Y   Y E
Sbjct: 170 KFCGFKRRSINEIIVQAQGEHTFAHYMPSHIAISAFLAAAQTKYPSKYSE 219

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224078830|ref|XP_002305644.1| predicted protein [Populus trichocarpa] gi|159025731|emb|CAN88866.1| D6-type cyclin [Populus trichocarpa] gi|222848608|gb|EEE86155.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296081259|emb|CBI18003.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225447693|ref|XP_002276869.1| PREDICTED: putative cyclin-D6-1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224114109|ref|XP_002316670.1| predicted protein [Populus trichocarpa] gi|159025733|emb|CAN88867.1| D6-type cyclin [Populus trichocarpa] gi|222859735|gb|EEE97282.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224146705|ref|XP_002326106.1| predicted protein [Populus trichocarpa] gi|159025735|emb|CAN88868.1| D6-type cyclin [Populus trichocarpa] gi|222862981|gb|EEF00488.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356546684|ref|XP_003541753.1| PREDICTED: putative cyclin-D6-1-like [Glycine max] Back     alignment and taxonomy information
>gi|297745660|emb|CBI40871.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359495729|ref|XP_002267937.2| PREDICTED: putative cyclin-D6-1-like, partial [Vitis vinifera] Back     alignment and taxonomy information
>gi|359359238|gb|AEV41137.1| D6-type cyclin [Populus x canadensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
TAIR|locus:2125522302 CYCD6;1 "AT4G03270" [Arabidops 0.547 0.662 0.284 4.4e-13
TAIR|locus:2142504298 CYCD4;2 "AT5G10440" [Arabidops 0.339 0.416 0.356 1.8e-09
TAIR|locus:2020663339 CYCD1;1 "CYCLIN D1;1" [Arabido 0.350 0.377 0.355 4e-08
ZFIN|ZDB-GENE-980526-176291 ccnd1 "cyclin D1" [Danio rerio 0.531 0.666 0.265 6.3e-07
UNIPROTKB|F1NS84292 CCND1 "G1/S-specific cyclin-D1 0.358 0.448 0.286 4.1e-06
UNIPROTKB|H0Z4M3292 CCND1 "Uncharacterized protein 0.358 0.448 0.293 5.3e-06
UNIPROTKB|P55169292 CCND1 "G1/S-specific cyclin-D1 0.358 0.448 0.286 6.9e-06
UNIPROTKB|F1PPQ3317 CCND1 "G1/S-specific cyclin-D1 0.356 0.410 0.284 8.4e-06
UNIPROTKB|P50755291 ccnd1 "G1/S-specific cyclin-D1 0.345 0.432 0.304 9e-06
UNIPROTKB|G3T0G2295 CCND1 "Uncharacterized protein 0.356 0.440 0.284 1.2e-05
TAIR|locus:2125522 CYCD6;1 "AT4G03270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 191 (72.3 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 64/225 (28%), Positives = 109/225 (48%)

Query:     1 MNFHHDYPLPAYKEEQFEKYFNVETEW--MADEGYAESKEVTLRKVAMHVILRSAFWV-- 56
             M FH ++PL           FN +T++  +    +    +        H +  SAF +  
Sbjct:     1 MEFHLEHPL---SHSSLHNNFNDDTDYETLPHSLFLVEFQHMPSSHYFHSLKSSAFLLSN 57

Query:    57 ---LLDSFPVQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTL 113
                 + S    + K D  D  + YLA+N  DRF+S   +P     +   + L + SC++L
Sbjct:    58 RNQAISSITQYSRKFD--DPSLTYLAVNYLDRFLSSEDMPQSKPWI---LKLISLSCVSL 112

Query:   114 AWKMRDNSFSVPEFL--GKWNLDKDLMLKMELQILRGLKWQMRAVTPICLVRFFVEMIPI 171
             + KMR    SV +    G++  D  ++ +ME  IL  LKW+MR+VTP   + FF+ +  +
Sbjct:   113 SAKMRKPDMSVSDLPVEGEF-FDAQMIERMENVILGALKWRMRSVTPFSFLAFFISLFEL 171

Query:   172 GKG---IERRTL----NEIIIQTQDNISFTRFRPSVIAASAVLTA 209
              +    + + +L    +++    Q +ISF  F+PSVIA +A+L A
Sbjct:   172 KEEDPLLLKHSLKSQTSDLTFSLQHDISFLEFKPSVIAGAALLFA 216
GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0051726 "regulation of cell cycle" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0010440 "stomatal lineage progression" evidence=RCA
GO:0042023 "DNA endoreduplication" evidence=RCA
GO:0045736 "negative regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=RCA
TAIR|locus:2142504 CYCD4;2 "AT5G10440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020663 CYCD1;1 "CYCLIN D1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-980526-176 ccnd1 "cyclin D1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NS84 CCND1 "G1/S-specific cyclin-D1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|H0Z4M3 CCND1 "Uncharacterized protein" [Taeniopygia guttata (taxid:59729)] Back     alignment and assigned GO terms
UNIPROTKB|P55169 CCND1 "G1/S-specific cyclin-D1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PPQ3 CCND1 "G1/S-specific cyclin-D1" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P50755 ccnd1 "G1/S-specific cyclin-D1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|G3T0G2 CCND1 "Uncharacterized protein" [Loxodonta africana (taxid:9785)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 1e-08
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 13/83 (15%)

Query: 77  YLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPE-----FLGKW 131
           YLA+N  DRF+S+  +P      R  + L   +CL +A K  +     P      ++   
Sbjct: 53  YLAVNYLDRFLSKQPVP------RTKLQLVGVTCLLIAAKYEE--IYPPSVEDFVYITDN 104

Query: 132 NLDKDLMLKMELQILRGLKWQMR 154
              K+ +L+MEL IL  L W + 
Sbjct: 105 AYTKEEILRMELLILSTLNWDLS 127

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 365
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 100.0
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 100.0
KOG0653391 consensus Cyclin B and related kinase-activating p 100.0
COG5024440 Cyclin [Cell division and chromosome partitioning] 100.0
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 99.95
TIGR00569305 ccl1 cyclin ccl1. University). 99.91
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 99.91
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.87
KOG0835367 consensus Cyclin L [General function prediction on 99.83
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 99.81
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.76
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.63
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 99.56
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.49
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.35
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.3
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 99.22
KOG1597308 consensus Transcription initiation factor TFIIB [T 98.95
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.54
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.54
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.12
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 97.69
KOG1598 521 consensus Transcription initiation factor TFIIIB, 97.45
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 97.02
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 96.32
PRK00423310 tfb transcription initiation factor IIB; Reviewed 94.75
KOG1674218 consensus Cyclin [General function prediction only 94.46
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 88.29
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 88.17
KOG1597308 consensus Transcription initiation factor TFIIB [T 84.73
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-39  Score=312.61  Aligned_cols=214  Identities=27%  Similarity=0.418  Sum_probs=193.5

Q ss_pred             ccHHHHHHHHHHHHhhhcCCCCCC----CCcChhhhHHHHHHHHHhhhhhhccCcccccccccCCCccHHHHHHHHHHHH
Q 035817           11 AYKEEQFEKYFNVETEWMADEGYA----ESKEVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLAMNIFDRF   86 (365)
Q Consensus        11 ~y~~ei~~~l~~~E~~~~p~~~y~----~~i~~~~R~~~v~wIlr~idWl~~~~~~~~v~~~~~l~~eTl~lAV~~lDRf   86 (365)
                      -+.++++..|+++|.++.|..+|.    ..+.+.+|..+++||+             +|++++++.++|++||+||||||
T Consensus        43 ~~~e~~i~~ll~kEe~~~p~~~~~~~~~~~~~~~~R~~A~~WIl-------------~V~~~~~~~~~~~~LA~NYlDRF  109 (335)
T KOG0656|consen   43 LWDERVLANLLEKEEQHNPSLDYFLCVQKLILSSMRKQALDWIL-------------KVCEEYNFEPLVFLLAMNYLDRF  109 (335)
T ss_pred             cccHHHHHHHHHHHHHhCCCCchhhhcccccccHHHHHHHHHHH-------------HHHHHhCCchHHHHHHHHHHHHh
Confidence            577899999999999999998755    4478889999988888             99999999999999999999999


Q ss_pred             HhcCCCCCccCCcccchhhhHHHHHHHHhhhccCCCC-hhhhhh---ccccCHHHHHHHHHHHHHhcCCccccCChHHHH
Q 035817           87 ISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFS-VPEFLG---KWNLDKDLMLKMELQILRGLKWQMRAVTPICLV  162 (365)
Q Consensus        87 ls~~~~~~~k~~~~~~lqLiavaCL~LAsK~eE~~~p-l~dl~~---~~~~t~~~Il~mE~~IL~~L~w~L~~pTp~~FL  162 (365)
                      ++.+.++..|+   |.+||+|+|||+||||+||+.+| +.|++.   ++.|.++.|.+||+.||.+|+|+++.+||++|+
T Consensus       110 ls~~~l~k~k~---W~lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~~~feaktI~rmELLVLstL~Wrl~aVTP~sF~  186 (335)
T KOG0656|consen  110 LSSQKLPKDKP---WMLQLLAVACLSLASKMEETDVPLLADLQVEYTDNVFEAKTIQRMELLVLSTLKWRLRAVTPFSFI  186 (335)
T ss_pred             hcccccCCCch---HHHHHHHHHHHHHHHhhcCcCCchhhhhhhccccccccHHHHHHHHHHHHhhccccccCCCchHHH
Confidence            99999998776   99999999999999999999988 578864   589999999999999999999999999999999


Q ss_pred             HHHHHHCCCC----hhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhhcCCCHHHHHH
Q 035817          163 RFFVEMIPIG----KGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRKYVEEEDLET  238 (365)
Q Consensus       163 ~~fl~~l~~~----~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~w~~~L~~~~~~~~~~l~~  238 (365)
                      ++|+.+++..    +.+..+ +..++..+..+..|++|+||+||+|++..+...+....+......+..+.+++.+.+..
T Consensus       187 ~~fl~ki~~~~~~~~~~~~~-~s~~ll~~~~d~~Fl~y~pSviAaa~~~~v~~~~~~l~~~~~~~~~~~~~~l~~e~~~~  265 (335)
T KOG0656|consen  187 DHFLSKISQKDHNKHLFLKH-ASLFLLSVITDIKFLEYPPSVIAAAAILSVSASVDGLDFREYENNLLSLLSLSKEKVNR  265 (335)
T ss_pred             HHHHHHcCcccchHHHHHHH-HHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhHHhhhc
Confidence            9999999875    456666 89999999999999999999999999999988887665555567788888999999999


Q ss_pred             HHH
Q 035817          239 CLD  241 (365)
Q Consensus       239 c~~  241 (365)
                      |+.
T Consensus       266 ~~~  268 (335)
T KOG0656|consen  266 CYD  268 (335)
T ss_pred             chh
Confidence            988

>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 1e-17
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 2e-17
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 1e-15
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 5e-15
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 9e-15
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 4e-14
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 4e-11
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 1e-09
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 4e-07
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 3e-06
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 3e-06
2ivx_A257 Cyclin-T2; transcription regulation, cell division 2e-05
1ais_B200 TFB TFIIB, protein (transcription initiation facto 7e-04
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 8e-04
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
 Score = 80.6 bits (199), Expect = 1e-17
 Identities = 29/198 (14%), Positives = 61/198 (30%), Gaps = 38/198 (19%)

Query: 77  YLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMR--------------DNSF 122
            LA+ + D      ++       R++    A   L +A K+R                + 
Sbjct: 71  PLAVALLDELFLSTRID------RENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGAT 124

Query: 123 SVPEFLGKWNLDKDLMLKMELQILRGLKWQMRAVTPICLVRFFVEMIPIGKG--IERRTL 180
           +  +           +L +E++ L  L W         L+ + + ++   +   +    L
Sbjct: 125 TADK-----------LLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIYNL 173

Query: 181 NEIIIQ-TQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRKYVEEEDLETC 239
               I     +      RP +I  + +         D YE     +    Y+ +E+L  C
Sbjct: 174 CRPKIFCALCDGRSAMKRPVLITLACMHLT-MNQKYDYYENRIDGVCKSLYITKEELHQC 232

Query: 240 ---LDETYEKCIEKKILL 254
              +D       E    +
Sbjct: 233 CDLVDIAIVSFDENYFKI 250
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Length = 200 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 100.0
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 99.97
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 99.97
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.95
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.89
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.75
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.45
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 98.0
1ais_B200 TFB TFIIB, protein (transcription initiation facto 96.6
1c9b_A207 General transcription factor IIB; protein-DNA comp 95.89
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 93.83
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 92.08
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 91.86
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 91.32
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 84.08
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 83.92
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 81.46
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 80.98
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 80.61
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 80.55
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 80.12
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=7.5e-44  Score=344.48  Aligned_cols=227  Identities=18%  Similarity=0.276  Sum_probs=196.9

Q ss_pred             CCCCCcccHHHHHHHHHHHHhhhcCCCCCC----CCcChhhhHHHHHHHHHhhhhhhccCcccccccccCCCccHHHHHH
Q 035817            5 HDYPLPAYKEEQFEKYFNVETEWMADEGYA----ESKEVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLAM   80 (365)
Q Consensus         5 ~~~p~~~y~~ei~~~l~~~E~~~~p~~~y~----~~i~~~~R~~~v~wIlr~idWl~~~~~~~~v~~~~~l~~eTl~lAV   80 (365)
                      ..||--.|.+|||++|+++|.++.|.++|+    .++++.+|..+++||+             +|+.+|+++++|+++||
T Consensus        30 ~~dp~l~~~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~-------------ev~~~~~l~~~t~~lAv   96 (306)
T 3g33_B           30 GPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWML-------------EVCEEQRCEEEVFPLAM   96 (306)
T ss_dssp             -------CHHHHHHHHHHHGGGGSCSSCCTTTSTTTCCHHHHHHHHHHHH-------------HHHHHTTCCTTHHHHHH
T ss_pred             CCCCcccchHHHHHHHHHHHHHhCCCcHHHhhcCccCCHHHHHHHHHHHH-------------HHHHHhCCcHhHHHHHH
Confidence            346655799999999999999999999998    3588899996666666             99999999999999999


Q ss_pred             HHHHHHHhcCCCCCccCCcccchhhhHHHHHHHHhhhccCCCC-hhhh--hhccccCHHHHHHHHHHHHHhcCCccccCC
Q 035817           81 NIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFS-VPEF--LGKWNLDKDLMLKMELQILRGLKWQMRAVT  157 (365)
Q Consensus        81 ~~lDRfls~~~~~~~k~~~~~~lqLiavaCL~LAsK~eE~~~p-l~dl--~~~~~~t~~~Il~mE~~IL~~L~w~L~~pT  157 (365)
                      +|||||+++..+.      ++++||+|+||||||+|+||..+| +.++  ++++.|++++|++||+.||++|+|++++||
T Consensus        97 ~~lDRfls~~~v~------~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~t  170 (306)
T 3g33_B           97 NYLDRYLSCVPTR------KAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVI  170 (306)
T ss_dssp             HHHHHHHHHCCCC------GGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred             HHHHHHHhcCCCc------HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCC
Confidence            9999999999887      479999999999999999999775 7787  477899999999999999999999999999


Q ss_pred             hHHHHHHHHHHCCCCh----hHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCCC--cchhhHHHHHhhcCC
Q 035817          158 PICLVRFFVEMIPIGK----GIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDD--IYEENKKILLSRKYV  231 (365)
Q Consensus       158 p~~FL~~fl~~l~~~~----~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~~--~~~~w~~~L~~~~~~  231 (365)
                      |++||.+|++.++...    .+.+. |+++++.++.++.|++|+||+||||||++|+..++..  +...|.+.|..++||
T Consensus       171 p~~fl~~~l~~l~~~~~~~~~~~~~-a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~  249 (306)
T 3g33_B          171 AHDFLAFILHRLSLPRDRQALVKKH-AQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGT  249 (306)
T ss_dssp             GGGGHHHHHHTSSCCTTTHHHHHHH-HHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcCCChhHHHHHHHH-HHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCC
Confidence            9999999999987652    24455 8999999999999999999999999999999988743  224678899999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcc
Q 035817          232 EEEDLETCLDETYEKCIEKK  251 (365)
Q Consensus       232 ~~~~l~~c~~~l~~l~~~~~  251 (365)
                      +.++|.+|++.|.+++.+..
T Consensus       250 ~~~~l~~c~~~I~~l~~~~l  269 (306)
T 3g33_B          250 EVDCLRACQEQIEAALRESL  269 (306)
T ss_dssp             CHHHHHHHHHHHHHHHHTC-
T ss_pred             CHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998754
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 365
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 6e-09
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 1e-08
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 4e-08
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 7e-08
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 2e-07
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 3e-07
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 3e-06
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 4e-06
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 6e-09
 Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 24/154 (15%)

Query: 8   PLP----AYKEEQFEKYFNVETEWMADEGYAE-SKEVTLRKVAMHVILRSAFWVLLDSFP 62
           PLP    A +EE ++   N E  ++ D+ + E    +  +   M  IL      + + + 
Sbjct: 2   PLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPK---MRAILLDWLMEVCEVY- 57

Query: 63  VQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRD-NS 121
                  KL     YLA + FDR+++  +        +  + L   S L +A K+ +   
Sbjct: 58  -------KLHRETFYLAQDFFDRYMATQENVV-----KTLLQLIGISSLFIAAKLEEIYP 105

Query: 122 FSVPEF--LGKWNLDKDLMLKMELQILRGLKWQM 153
             + +F  +       D +L MEL I++ LKW++
Sbjct: 106 PKLHQFAYVTDGACSGDEILTMELMIMKALKWRL 139
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.96
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.96
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.95
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.93
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.92
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.79
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.78
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.74
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.48
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 98.81
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 98.76
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.27
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.21
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 98.13
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 98.05
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.85
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.73
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.73
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.58
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.31
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 96.72
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 94.37
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 89.06
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 87.52
d1f5qb2106 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 86.44
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 85.1
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 81.12
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 80.83
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 80.32
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]

Probab=99.96  E-value=3.5e-29  Score=211.57  Aligned_cols=124  Identities=17%  Similarity=0.342  Sum_probs=112.5

Q ss_pred             cHHHHHHHHHHHHhhhcCCCCCC----CCcChhhhHHHHHHHHHhhhhhhccCcccccccccCCCccHHHHHHHHHHHHH
Q 035817           12 YKEEQFEKYFNVETEWMADEGYA----ESKEVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLAMNIFDRFI   87 (365)
Q Consensus        12 y~~ei~~~l~~~E~~~~p~~~y~----~~i~~~~R~~~v~wIlr~idWl~~~~~~~~v~~~~~l~~eTl~lAV~~lDRfl   87 (365)
                      +.++|+++|++.|.++.|.++|+    +++++.+|..+++|+.             +|+..++++.+|+++||+|||||+
T Consensus         2 ~~~~i~~~l~~~E~~~~p~~~y~~~~q~~it~~~R~~lidWl~-------------~v~~~~~l~~et~~lAv~llDrfl   68 (132)
T d1g3nc1           2 CEDRIFYNILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMF-------------SVCQEYNLEPNVVALALNLLDRLL   68 (132)
T ss_dssp             HHHHHHHHHHHHGGGGCCCGGGHHHHTSSCCHHHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHCCChHHHHhcCccCCHHHHHHHHHHHH-------------HHHHHhCCCcchHHHHHHHHHHHc
Confidence            56899999999999999999998    6799999996655555             999999999999999999999999


Q ss_pred             hcCCCCCccCCcccchhhhHHHHHHHHhhhccCCCC-hhhh--hhccccCHHHHHHHHHHHHHhcCCccc
Q 035817           88 SRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFS-VPEF--LGKWNLDKDLMLKMELQILRGLKWQMR  154 (365)
Q Consensus        88 s~~~~~~~k~~~~~~lqLiavaCL~LAsK~eE~~~p-l~dl--~~~~~~t~~~Il~mE~~IL~~L~w~L~  154 (365)
                      ++..+.      +.++|++|+||||||+|+||..+| +.++  ++++.|++++|.+||+.||++|+|++.
T Consensus        69 s~~~v~------~~~lqLia~tcl~iAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~w~l~  132 (132)
T d1g3nc1          69 LIKQVS------KEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTE  132 (132)
T ss_dssp             TTCCCC------HHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             CcccCc------HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCC
Confidence            999887      368999999999999999999765 6777  577999999999999999999999974
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5qb2 a.74.1.1 (B:147-252) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure